Psyllid ID: psy258

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MEEDEDDHKMIINAIDNLKDTGDMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCEDGAMVGTKRIMQTACPPTKP
Secondary Structure (PSIPRED)
cccccccccEEEEcccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccEEEEcccccEEEEEEccHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccccccccHHHHccccccccEEEEEEccHHHccccccccHccHHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEccccEEEEEEcccHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHccccccEEEccccccccEEEEEEcccccccccccEEccccccccc
Coil and Loop (DISEMBL)
MEEDEDDHKMIINAIDnlkdtgdmgdslddlindeqlpksliitnlnpdlfkdDALKEQIETLLSqfgkpksfqyLKNDALKEQIETLLSqfgkpksfQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKinvyfvqpmtpfdsadqhlqppaptkqflisppssppvgweprpeseplvnYDLLAAIASltpglshelhapsesqpgivVHVCedgamvgtkrimqtacpptkp
Flexible Loop (DISEMBL)
MEEDEDDHKMIINAidnlkdtgdMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLlsqfgkpksFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCEDGAMVGtkrimqtacpptkp
Low Complexity Region (SEG)
MEEDEDDHKMIINAIDNLKDTGDMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCEDGAMVGTKRIMQTACPPTKP
Disordered region (IsUnstruct)
***********INAI***************LINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPM***************************************LVNYDLLAAIASLTPGL************GIVVHVCEDGAMVGTKRI**********
Disordered Region (DISOPRED)
******D***IIN******************INDEQLPKSLIITNLNPDLFKDDAL**Q**TLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPM************PAPTKQFLISPPSSPPV**EP*PESEPLVNYDLLAAIASL********************************************
Disordered Region (DISEMBL)
********KMIINAIDNLKDTGDMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPP***********ESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCEDGAMVGTKRIMQ********
Disordered Region (DISPRO)
******DHKMIINAIDNLKD****GDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCEDGAMV**KRIM*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEDEDDHKMIINAIDNLKDTGDMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCEDGAMVGTKRIMQTACPPTKP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q9XZL8	292	Protein sarah OS=Drosophi	yes	N/A	0.819	0.667	0.449	6e-43
Q8CH27	197	Calcipressin-2 OS=Rattus	yes	N/A	0.676	0.817	0.473	4e-38
Q4R4P5	197	Calcipressin-2 OS=Macaca	N/A	N/A	0.676	0.817	0.467	9e-38
Q5RE25	197	Calcipressin-2 OS=Pongo a	yes	N/A	0.676	0.817	0.467	9e-38
A5A6I8	197	Calcipressin-2 OS=Pan tro	yes	N/A	0.676	0.817	0.467	9e-38
Q14206	197	Calcipressin-2 OS=Homo sa	yes	N/A	0.676	0.817	0.467	9e-38
Q9JHG2	197	Calcipressin-2 OS=Mus mus	yes	N/A	0.676	0.817	0.467	9e-38
Q3ZC15	197	Calcipressin-2 OS=Bos tau	yes	N/A	0.676	0.817	0.461	2e-37
Q9JKK0	239	Calcipressin-3 OS=Mus mus	no	N/A	0.718	0.715	0.401	2e-36
Q5ZJV6	249	Calcipressin-3 OS=Gallus	yes	N/A	0.903	0.863	0.395	3e-36

>sp|Q9XZL8|SRA_DROME Protein sarah OS=Drosophila melanogaster GN=sra PE=1 SV=1

 Score =  174 bits (440), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/249 (44%), Positives = 143/249 (57%), Gaps = 54/249 (21%)

Query: 7   DHKMIINAIDNLKDT-------GDM---------GDSLDDLINDEQLPKSLIITNLNPDL 50
           D  + INA D L +        GD+          DS DDL      P S+I+TN++ ++
Sbjct: 74  DQDIFINAADGLPNQHPSLPKEGDVDSDTEPEVDADSFDDL------PTSIIVTNIHSEV 127

Query: 51  FKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVN 110
           F                          N  LK  +E L   F +  +FQ+L+SFRR+RVN
Sbjct: 128 FA-------------------------NPELKHAMEELFRTFSESATFQWLRSFRRLRVN 162

Query: 111 YESSAAAAKARINLHQSVF-ASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSP 169
           Y+++ AAA ARI LHQ  F   + I  YF QP+TP   ++++LQPPAP KQFLISPP+SP
Sbjct: 163 YDNAIAAANARIKLHQYEFNKKTVITCYFAQPVTPV--SNKNLQPPAPVKQFLISPPASP 220

Query: 170 PVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVH---VCEDGAMVGTK 226
           P GWEPR E EPLVN+DLLAA+ASLTPG SHELH  SE QP I+VH   + E G  +  K
Sbjct: 221 PAGWEPREEGEPLVNHDLLAALASLTPGESHELHPQSEDQPAIIVHTAMLAETGPGLQVK 280

Query: 227 R-IMQTACP 234
             I+QT CP
Sbjct: 281 APIVQTKCP 289

Required for elongation of meiosis I spindle. Critical for ovulation, meiotic progression in oocytes and female courtship behavior, including their postmating changes. Regulates female meiosis by controlling calcineurin activity in the germline. Has a role in calcium signaling during egg activation; bcd mRNA polyadenylation and translation in the oocyte.
Drosophila melanogaster (taxid: 7227)

>sp|Q8CH27|RCAN2_RAT Calcipressin-2 OS=Rattus norvegicus GN=Rcan2 PE=2 SV=1

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 74  QYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK 133
           +   N  +KE+ E L   + +  +FQ  KSFRR+R+N+    AAA+ARI LH++ F   K
Sbjct: 21  EVFTNQEVKEKFEGLFRTYDECVTFQLFKSFRRVRINFSHPKAAARARIELHETQFRGKK 80

Query: 134 INVYFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIA 192
           + +YF Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A
Sbjct: 81  LKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWKPISDATPVLNYDLLYAVA 140

Query: 193 SLTPGLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACP 234
            L PG  +ELHA +ES P +VVHVC       ED       +I+QT  P
Sbjct: 141 KLGPGEKYELHAGTESTPSVVVHVCDSDLEEEEDPKTSPKPKIIQTRRP 189

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Rattus norvegicus (taxid: 10116)

>sp|Q4R4P5|RCAN2_MACFA Calcipressin-2 OS=Macaca fascicularis GN=RCAN2 PE=2 SV=1

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 74  QYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK 133
           +   N  +KE+ E L   +    +FQ  KSFRR+R+N+ +  +AA+ARI LH++ F   K
Sbjct: 21  EVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKK 80

Query: 134 INVYFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIA 192
           + +YF Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A
Sbjct: 81  LKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVA 140

Query: 193 SLTPGLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACP 234
            L PG  +ELHA +ES P +VVHVC       ED       +I+QT  P
Sbjct: 141 KLRPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRP 189

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Macaca fascicularis (taxid: 9541)

>sp|Q5RE25|RCAN2_PONAB Calcipressin-2 OS=Pongo abelii GN=RCAN2 PE=2 SV=1

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 74  QYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK 133
           +   N  +KE+ E L   +    +FQ  KSFRR+R+N+ +  +AA+ARI LH++ F   K
Sbjct: 21  EVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKK 80

Query: 134 INVYFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIA 192
           + +YF Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A
Sbjct: 81  LKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVA 140

Query: 193 SLTPGLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACP 234
            L PG  +ELHA +ES P +VVHVC       ED       +I+QT  P
Sbjct: 141 KLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRP 189

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Pongo abelii (taxid: 9601)

>sp|A5A6I8|RCAN2_PANTR Calcipressin-2 OS=Pan troglodytes GN=RCAN2 PE=2 SV=2

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 74  QYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK 133
           +   N  +KE+ E L   +    +FQ  KSFRR+R+N+ +  +AA+ARI LH++ F   K
Sbjct: 21  EVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKK 80

Query: 134 INVYFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIA 192
           + +YF Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A
Sbjct: 81  LKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVA 140

Query: 193 SLTPGLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACP 234
            L PG  +ELHA +ES P +VVHVC       ED       +I+QT  P
Sbjct: 141 KLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRP 189

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Pan troglodytes (taxid: 9598)

>sp|Q14206|RCAN2_HUMAN Calcipressin-2 OS=Homo sapiens GN=RCAN2 PE=2 SV=3

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 74  QYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK 133
           +   N  +KE+ E L   +    +FQ  KSFRR+R+N+ +  +AA+ARI LH++ F   K
Sbjct: 21  EVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKK 80

Query: 134 INVYFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIA 192
           + +YF Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A
Sbjct: 81  LKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVA 140

Query: 193 SLTPGLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACP 234
            L PG  +ELHA +ES P +VVHVC       ED       +I+QT  P
Sbjct: 141 KLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRP 189

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Homo sapiens (taxid: 9606)

>sp|Q9JHG2|RCAN2_MOUSE Calcipressin-2 OS=Mus musculus GN=Rcan2 PE=2 SV=1

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 74  QYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK 133
           +   N  +KE+ E L   + +  +FQ  KSFRR+R+N+    +AA+ARI LH++ F   K
Sbjct: 21  EVFTNQEVKEKFEGLFRTYDECVTFQLFKSFRRVRINFSHPKSAARARIELHETQFRGKK 80

Query: 134 INVYFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIA 192
           + +YF Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A
Sbjct: 81  LKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWKPISDATPVLNYDLLYAVA 140

Query: 193 SLTPGLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACP 234
            L PG  +ELHA +ES P +VVHVC       ED       +I+QT  P
Sbjct: 141 KLGPGEKYELHAGTESTPSVVVHVCDSDMEEEEDPKTSPKPKIIQTRRP 189

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Mus musculus (taxid: 10090)

>sp|Q3ZC15|RCAN2_BOVIN Calcipressin-2 OS=Bos taurus GN=RCAN2 PE=2 SV=1

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 74  QYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK 133
           +   N  +KE+ E L   +    +FQ  KSFRR+R+N+ +  +AA+ARI LH++ F   K
Sbjct: 21  EVFTNQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKK 80

Query: 134 INVYFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIA 192
           + +YF Q  TP    D+ HL PP P KQFLISPP+SPPVGW+P  ++ P++NYDLL A+A
Sbjct: 81  LKLYFAQVQTPETDGDKLHLAPPQPAKQFLISPPASPPVGWQPISDATPVLNYDLLYAVA 140

Query: 193 SLTPGLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACP 234
            L PG  +ELHA +ES P +VVHVC       ED       +I+QT  P
Sbjct: 141 KLGPGEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRP 189

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Bos taurus (taxid: 9913)

>sp|Q9JKK0|RCAN3_MOUSE Calcipressin-3 OS=Mus musculus GN=Rcan3 PE=1 SV=1

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 118/197 (59%), Gaps = 26/197 (13%)

Query: 22  GDMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDAL 81
           G+  D L+++++   LP SL   +++  +F+   ++EQ                      
Sbjct: 30  GENEDGLEEMMDLSDLPTSLFACSVHEAVFE---VQEQ---------------------- 64

Query: 82  KEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141
           KE+ E L + +    +FQ  KSFRR+R+N+    AAA+ARI LH+S F   K+ +YF Q 
Sbjct: 65  KERFEALFTLYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHESEFHGRKLKLYFAQV 124

Query: 142 MTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSH 200
               ++ D+ +L PP PTKQFLISPP+SPPVGW+   ++ P++NYDLL A++ L PG  +
Sbjct: 125 QVSGEARDKSYLLPPQPTKQFLISPPASPPVGWKQSEDAMPVINYDLLCAVSKLGPGEKY 184

Query: 201 ELHAPSESQPGIVVHVC 217
           ELHA +ES P +VVHVC
Sbjct: 185 ELHAGTESTPSVVVHVC 201

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Mus musculus (taxid: 10090)

>sp|Q5ZJV6|RCAN3_CHICK Calcipressin-3 OS=Gallus gallus GN=RCAN3 PE=2 SV=2

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 127/225 (56%), Gaps = 10/225 (4%)

Query: 18  LKDT-GDMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYL 76
           L+DT     DS  DL + +Q  +  +I   N D F++      + T L  F         
Sbjct: 2   LRDTMKSWSDSQSDLYSSDQEEEEQMIFGENEDDFEEMMDLSDLPTSL--FACSVHEAVF 59

Query: 77  KNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136
           +    KE+ E L + +    +FQ  KSFRR+R+N+ +  AAA+ARI LH++ F+  K+ +
Sbjct: 60  EVQEEKERFEALFTVYDNQVTFQLFKSFRRVRINFSNPEAAARARIELHETDFSGKKLKL 119

Query: 137 YFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLT 195
           YF Q     +  D+ +L PP P KQFLISPP+SPPVGW+   ++ PL+NYDLL A++ L 
Sbjct: 120 YFAQVQVSSEVGDKSYLLPPQPVKQFLISPPASPPVGWKQSEDATPLINYDLLCAVSKLG 179

Query: 196 PGLSHELHAPSESQPGIVVHVCEDGAMVGT------KRIMQTACP 234
           PG  +ELHA +ES P +VVHVCE             ++IMQT  P
Sbjct: 180 PGEKYELHAGTESTPSVVVHVCESETEEEEEIKNPKQKIMQTRRP 224

Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
242006470	301	protein sarah, putative [Pediculus human	0.865	0.684	0.498	2e-60
380026381	240	PREDICTED: protein sarah-like [Apis flor	0.768	0.762	0.555	6e-59
332026212	240	Protein sarah [Acromyrmex echinatior]	0.768	0.762	0.555	7e-59
350423518	242	PREDICTED: protein sarah-like [Bombus im	0.768	0.756	0.545	9e-59
156555191	244	PREDICTED: protein sarah-like [Nasonia v	0.768	0.75	0.538	9e-59
322780802	240	hypothetical protein SINV_02663 [Solenop	0.861	0.854	0.510	1e-58
307175969	240	Protein sarah [Camponotus floridanus]	0.873	0.866	0.492	2e-58
383851852	242	PREDICTED: protein sarah-like [Megachile	0.844	0.830	0.497	2e-58
340710264	242	PREDICTED: protein sarah-like [Bombus te	0.768	0.756	0.540	3e-58
307195536	241	Protein sarah [Harpegnathos saltator]	0.819	0.809	0.527	2e-57

>gi|242006470|ref|XP_002424073.1| protein sarah, putative [Pediculus humanus corporis] gi|212507379|gb|EEB11335.1| protein sarah, putative [Pediculus humanus corporis]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/251 (49%), Positives = 159/251 (63%), Gaps = 45/251 (17%)

Query: 1   MEEDE----DDHKMIINAIDNLKD----------------TGDMGDSLDDLINDEQLPKS 40
           ME D+    D + +IINA+D L +                T +   SLD+LI+DE LP S
Sbjct: 6   MESDKLFHNDSNDIIINAVDGLPNVHPNYNEFELERNDVKTSEDSRSLDELIHDEDLPTS 65

Query: 41  LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY 100
           LI+TN++  +F                          ++  K++I+ L SQFG+P+S Q+
Sbjct: 66  LIVTNIDSSVFH-------------------------SEEAKKKIQVLFSQFGEPESIQF 100

Query: 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQ 160
            +SFRRMRVNY+  +AAAKARI LHQ+ F   KIN YF QP++P D  DQHL PPA TKQ
Sbjct: 101 FRSFRRMRVNYKCPSAAAKARIQLHQANFGKKKINCYFAQPVSPIDLEDQHLHPPALTKQ 160

Query: 161 FLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCEDG 220
           FLISPP+SPPVGWEP+ ESEPLVNYDLLAAIA+LTPG +HE+H P   QPGIVVHVCE+ 
Sbjct: 161 FLISPPASPPVGWEPKEESEPLVNYDLLAAIANLTPGEAHEIHPPQGGQPGIVVHVCEEP 220

Query: 221 AMVGTKRIMQT 231
           +     RI+ T
Sbjct: 221 STAVKSRIIHT 231

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026381|ref|XP_003696930.1| PREDICTED: protein sarah-like [Apis florea]

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 116/209 (55%), Positives = 139/209 (66%), Gaps = 26/209 (12%)

Query: 27  SLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIE 86
           S++DL+ DE LP S+I+TN++P +FK                         ND LK++I+
Sbjct: 54  SIEDLVRDEDLPTSVIVTNVDPRVFK-------------------------NDELKDEIQ 88

Query: 87  TLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFD 146
            L  QFGK  +FQY +SFRRMRVNY S  AAA ARI LHQ+ F  + IN YF QP+TP D
Sbjct: 89  DLFKQFGKDATFQYFRSFRRMRVNYSSPNAAANARIQLHQTHFGETNINCYFAQPVTPID 148

Query: 147 SADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPS 206
             DQHLQPPA TKQFLISPP+SPP+GWEPR E+EPLVN+DLLAAIA+L+ G SHELH   
Sbjct: 149 VEDQHLQPPALTKQFLISPPASPPIGWEPREENEPLVNHDLLAAIANLSAGGSHELHPGG 208

Query: 207 ESQPGIVVHVCE-DGAMVGTKRIMQTACP 234
             QPGIVVHVCE    +    RI  T CP
Sbjct: 209 SGQPGIVVHVCETTNPIKNVPRIQHTRCP 237

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026212|gb|EGI66354.1| Protein sarah [Acromyrmex echinatior]

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 116/209 (55%), Positives = 138/209 (66%), Gaps = 26/209 (12%)

Query: 27  SLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIE 86
           S+D+L++DE LP S+I+TN++P +FKDD LK  IE                         
Sbjct: 55  SIDELVHDEDLPTSVIVTNVDPRVFKDDDLKSSIEH------------------------ 90

Query: 87  TLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFD 146
            L  QFG+  +FQY +SFRRMRVNY S +AAA ARI LHQS F  + IN YF QP+TP D
Sbjct: 91  -LFKQFGEDTTFQYFRSFRRMRVNYSSPSAAANARIQLHQSHFGETDINCYFAQPVTPID 149

Query: 147 SADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPS 206
             DQHLQPPA TKQFLISPP+SPP+GWEPR E EPLVNYDLL AIA+L+ G +HE+H   
Sbjct: 150 MEDQHLQPPALTKQFLISPPASPPIGWEPREEGEPLVNYDLLTAIANLSAGDTHEIHPGG 209

Query: 207 ESQPGIVVHVCEDGA-MVGTKRIMQTACP 234
             QPGIVVHVCE+      T RI  T CP
Sbjct: 210 SGQPGIVVHVCENANPSKNTPRIQHTRCP 238

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423518|ref|XP_003493506.1| PREDICTED: protein sarah-like [Bombus impatiens]

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 114/209 (54%), Positives = 139/209 (66%), Gaps = 26/209 (12%)

Query: 27  SLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIE 86
           +++DL++DE LP S+I+TN++P +FKDD LKE+                         I+
Sbjct: 56  TIEDLVHDEDLPTSVIVTNVDPGVFKDDELKEE-------------------------IQ 90

Query: 87  TLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFD 146
            L  QFG+  +FQY +SFRRMRVNY S +AAA ARI LHQ+ F  + IN YF QP+TP D
Sbjct: 91  NLFKQFGEDATFQYFRSFRRMRVNYSSPSAAANARIQLHQAHFGETDINCYFAQPVTPID 150

Query: 147 SADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPS 206
             DQHL PPA TKQFLISPP+SPP+GW+PR E EPLVN+DLLAAIA+L+ G SHELH   
Sbjct: 151 VEDQHLHPPALTKQFLISPPASPPIGWQPREEGEPLVNHDLLAAIANLSAGGSHELHPGG 210

Query: 207 ESQPGIVVHVCE-DGAMVGTKRIMQTACP 234
             QPGIVVHVCE    M    RI  T CP
Sbjct: 211 SGQPGIVVHVCETTNPMKNVPRIQHTRCP 239

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555191|ref|XP_001603743.1| PREDICTED: protein sarah-like [Nasonia vitripennis]

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 113/210 (53%), Positives = 143/210 (68%), Gaps = 27/210 (12%)

Query: 27  SLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIE 86
           +L+DLI+DE LP S+I+TN++P +FK                         +D  K ++E
Sbjct: 58  TLEDLIHDEDLPTSVIVTNVDPRVFK-------------------------SDEFKVEME 92

Query: 87  TLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFD 146
            L  QFG+  +FQY +SFRRMRVNY+S +AA++ARI LHQ+ F  + IN YF QP+TP D
Sbjct: 93  KLFKQFGQDATFQYFRSFRRMRVNYKSPSAASQARIQLHQTHFGETDINCYFAQPVTPID 152

Query: 147 SADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPS 206
             D+HL PPAP KQFLISPP+SPP+GWEPR E EPLVN+DLLAAIA+LTPG SHELH   
Sbjct: 153 VEDRHLHPPAPHKQFLISPPASPPIGWEPREEGEPLVNHDLLAAIANLTPGESHELHPGG 212

Query: 207 ESQPGIVVHVCEDG--AMVGTKRIMQTACP 234
            +QPGIVVH+CE+   A+    RI  T CP
Sbjct: 213 SNQPGIVVHICENAANAVKSAGRIPHTRCP 242

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322780802|gb|EFZ10031.1| hypothetical protein SINV_02663 [Solenopsis invicta]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/247 (51%), Positives = 148/247 (59%), Gaps = 42/247 (17%)

Query: 5   EDDHKMIINAIDNL------------KDTGDMGD----SLDDLINDEQLPKSLIITNLNP 48
           ED   +IIN +D L            K  G+  D    S+D+L++DE LP S+I+TN++P
Sbjct: 17  EDTENIIINEVDGLPNLHPNYAQLEFKFEGETEDANIRSIDELVHDEDLPTSVIVTNVDP 76

Query: 49  DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMR 108
            +FK                          D LK  IE L  QFG   +FQY +SFRRMR
Sbjct: 77  RVFK-------------------------CDDLKLAIENLFKQFGGDATFQYFRSFRRMR 111

Query: 109 VNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSS 168
           VNY S +AAA ARI LHQS F  + IN YF QP+TP D  DQHL PPA TKQFLISPP+S
Sbjct: 112 VNYNSPSAAANARIQLHQSHFGETDINCYFAQPVTPIDLEDQHLHPPALTKQFLISPPAS 171

Query: 169 PPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCED-GAMVGTKR 227
           PPVGWEPR E EPLVNYDLLAAIA+L+ G +HE+H     QPGIVVHVCE       T R
Sbjct: 172 PPVGWEPREEGEPLVNYDLLAAIANLSAGGTHEIHPGGSGQPGIVVHVCESTNPAKNTPR 231

Query: 228 IMQTACP 234
           I  T CP
Sbjct: 232 IQHTRCP 238

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175969|gb|EFN65764.1| Protein sarah [Camponotus floridanus]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/250 (49%), Positives = 153/250 (61%), Gaps = 42/250 (16%)

Query: 2   EEDEDDHKMIINAIDNL---------------KDTGDMG-DSLDDLINDEQLPKSLIITN 45
           EE ED   +IIN +D L               +++ D    S+D+L++DE LP S+I+TN
Sbjct: 14  EELEDTENIIINEVDGLPNLHPNYEQLELEFERESHDTDIRSIDELVHDEDLPTSVIVTN 73

Query: 46  LNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR 105
           ++P +FK                         ND LK  IE L  QFG+  +FQY +SFR
Sbjct: 74  VDPRVFK-------------------------NDDLKPAIENLFKQFGEDATFQYFRSFR 108

Query: 106 RMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISP 165
           RMRVNY S  AAA AR++LHQ+ F  + IN YF QP+TP D  DQHLQPPA TKQFLISP
Sbjct: 109 RMRVNYNSPNAAANARLHLHQTHFGETDINCYFAQPVTPIDMEDQHLQPPALTKQFLISP 168

Query: 166 PSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCEDG-AMVG 224
           P+SPPVGW+PR E EPLVN+DLLAAIA+L+ G +HE+H     QPGIVVHVCE   +   
Sbjct: 169 PASPPVGWKPREEGEPLVNHDLLAAIANLSTGGTHEIHPGGSGQPGIVVHVCESANSAKN 228

Query: 225 TKRIMQTACP 234
             RI  T CP
Sbjct: 229 APRIQHTRCP 238

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851852|ref|XP_003701445.1| PREDICTED: protein sarah-like [Megachile rotundata]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 122/245 (49%), Positives = 151/245 (61%), Gaps = 44/245 (17%)

Query: 9   KMIINAIDNL-----------------KDTGDMGD-SLDDLINDEQLPKSLIITNLNPDL 50
            +IIN +D L                 KD  D+   S++DL++DE LP S+I+TN++P +
Sbjct: 20  NIIINEVDGLPNLHPNYQQLGFEFDVQKDHNDISTRSVEDLVHDEDLPTSVIVTNVDPRV 79

Query: 51  FKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVN 110
           FK                         +D LK++IE L  +FG+  +FQY +SFRRMRVN
Sbjct: 80  FK-------------------------SDELKQEIENLFKKFGEDATFQYFRSFRRMRVN 114

Query: 111 YESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPP 170
           Y S  AAA ARI LHQ+ F  + IN YF QP+TP D  DQHLQPPA TKQFLISPP+SPP
Sbjct: 115 YSSPNAAANARIQLHQTHFGETNINCYFAQPVTPIDIEDQHLQPPALTKQFLISPPASPP 174

Query: 171 VGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPSESQPGIVVHVCE-DGAMVGTKRIM 229
           +GWEP+ E+EPLVN+DLLAAIA+L+ G SHELH     QPGIVVHVCE    M    RI 
Sbjct: 175 IGWEPKEENEPLVNHDLLAAIANLSAGGSHELHPGGSGQPGIVVHVCETTNPMKNVPRIQ 234

Query: 230 QTACP 234
            T CP
Sbjct: 235 HTRCP 239

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710264|ref|XP_003393713.1| PREDICTED: protein sarah-like [Bombus terrestris]

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/209 (54%), Positives = 139/209 (66%), Gaps = 26/209 (12%)

Query: 27  SLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIE 86
           +++DL++DE LP S+I+TN++P +FKDD LK++I                         +
Sbjct: 56  TIEDLVHDEDLPTSVIVTNVDPRVFKDDELKQEI-------------------------Q 90

Query: 87  TLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFD 146
            L  QFG+  +FQY +SFRRMRVNY S +AAA ARI LHQ+ F  + IN YF QP+TP D
Sbjct: 91  NLFKQFGEDATFQYFRSFRRMRVNYSSPSAAANARIQLHQAHFGETDINCYFAQPVTPID 150

Query: 147 SADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSHELHAPS 206
             DQHL PPA TKQFLISPP+SPP+GW+PR E EPLVN+DLLAAIA+L+ G SHELH   
Sbjct: 151 VEDQHLHPPALTKQFLISPPASPPIGWQPREEGEPLVNHDLLAAIANLSAGGSHELHPGG 210

Query: 207 ESQPGIVVHVCE-DGAMVGTKRIMQTACP 234
             QPGIVVHVCE    M    RI  T CP
Sbjct: 211 SGQPGIVVHVCETTNPMKNVPRIQHTRCP 239

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195536|gb|EFN77422.1| Protein sarah [Harpegnathos saltator]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/222 (52%), Positives = 140/222 (63%), Gaps = 27/222 (12%)

Query: 15  IDNLKDTGDMG-DSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSF 73
            D  +  GD    S+D+L++DE LP S+I+TN++P +FK                     
Sbjct: 43  FDRERHIGDTSIRSIDELVHDEDLPTSVIVTNVDPRVFK--------------------- 81

Query: 74  QYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK 133
                D LK  IE L  QFG+  +FQY +SFRRMRVNY S +AAA AR+ LHQ+ F  + 
Sbjct: 82  ----GDELKPAIENLFKQFGEDATFQYFRSFRRMRVNYNSPSAAANARLQLHQTHFGETD 137

Query: 134 INVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIAS 193
           IN YF QP+TP D  DQHLQPPA TKQFLISPP+SPP+GWEPR E EPLVN+DLLAAIA+
Sbjct: 138 INCYFAQPVTPIDMEDQHLQPPALTKQFLISPPASPPIGWEPREEGEPLVNHDLLAAIAN 197

Query: 194 LTPGLSHELHAPSESQPGIVVHVCEDGA-MVGTKRIMQTACP 234
           L+ G SHELH     QPGIVVHVCE         RI  T CP
Sbjct: 198 LSAGGSHELHPAGSGQPGIVVHVCETANPAKNAPRIQHTRCP 239

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
FB|FBgn0086370	292	sra "sarah" [Drosophila melano	0.894	0.729	0.467	4.5e-43
RGD|69198	197	Rcan2 "regulator of calcineuri	0.676	0.817	0.479	6.3e-37
UNIPROTKB|Q8CH27	197	Rcan2 "Calcipressin-2" [Rattus	0.676	0.817	0.479	6.3e-37
UNIPROTKB|Q5ZJV6	249	RCAN3 "Calcipressin-3" [Gallus	0.836	0.799	0.408	8e-37
UNIPROTKB|Q14206	197	RCAN2 "Calcipressin-2" [Homo s	0.676	0.817	0.473	1.3e-36
MGI|MGI:1858219	197	Rcan2 "regulator of calcineuri	0.676	0.817	0.473	1.3e-36
RGD|1311826	256	Rcan3 "RCAN family member 3" [	0.794	0.738	0.419	1.7e-36
UNIPROTKB|Q3ZC15	197	RCAN2 "Calcipressin-2" [Bos ta	0.676	0.817	0.467	2.1e-36
UNIPROTKB|E2RKP6	197	RCAN2 "Uncharacterized protein	0.676	0.817	0.467	2.1e-36
UNIPROTKB|F1LTA6	174	Rcan2 "Calcipressin-2" [Rattus	0.659	0.902	0.484	2.7e-36

FB|FBgn0086370 sra "sarah" [Drosophila melanogaster (taxid:7227)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 108/231 (46%), Positives = 143/231 (61%)

Query:    14 AIDNLKDTGDMG-DSLDDLINDE-QLPKSLII-TNLNPDLFKD--DALKEQIETLLSQFG 68
             +ID L    D+  ++ D L N    LPK   + ++  P++  D  D L   I  +++   
Sbjct:    67 SIDKLSPDQDIFINAADGLPNQHPSLPKEGDVDSDTEPEVDADSFDDLPTSI--IVTNIH 124

Query:    69 KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSV 128
                  +   N  LK  +E L   F +  +FQ+L+SFRR+RVNY+++ AAA ARI LHQ  
Sbjct:   125 S----EVFANPELKHAMEELFRTFSESATFQWLRSFRRLRVNYDNAIAAANARIKLHQYE 180

Query:   129 F-ASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDL 187
             F   + I  YF QP+TP   ++++LQPPAP KQFLISPP+SPP GWEPR E EPLVN+DL
Sbjct:   181 FNKKTVITCYFAQPVTPV--SNKNLQPPAPVKQFLISPPASPPAGWEPREEGEPLVNHDL 238

Query:   188 LAAIASLTPGLSHELHAPSESQPGIVVH---VCEDGAMVGTKR-IMQTACP 234
             LAA+ASLTPG SHELH  SE QP I+VH   + E G  +  K  I+QT CP
Sbjct:   239 LAALASLTPGESHELHPQSEDQPAIIVHTAMLAETGPGLQVKAPIVQTKCP 289

GO:0007127 "meiosis I" evidence=NAS

GO:0008355 "olfactory learning" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0046008 "regulation of female receptivity, post-mating" evidence=IMP

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007143 "female meiosis" evidence=IMP

GO:0007343 "egg activation" evidence=IMP

GO:0035039 "male pronucleus assembly" evidence=IMP

GO:0007126 "meiosis" evidence=IGI

GO:0030431 "sleep" evidence=IDA

RGD|69198 Rcan2 "regulator of calcineurin 2" [Rattus norvegicus (taxid:10116)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/169 (47%), Positives = 106/169 (62%)

Query:    78 NDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVY 137
             N  +KE+ E L   + +  +FQ  KSFRR+R+N+    AAA+ARI LH++ F   K+ +Y
Sbjct:    25 NQEVKEKFEGLFRTYDECVTFQLFKSFRRVRINFSHPKAAARARIELHETQFRGKKLKLY 84

Query:   138 FVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTP 196
             F Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A L P
Sbjct:    85 FAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWKPISDATPVLNYDLLYAVAKLGP 144

Query:   197 GLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACPPTKP 238
             G  +ELHA +ES P +VVHVC       ED       +I+QT  P   P
Sbjct:   145 GEKYELHAGTESTPSVVVHVCDSDLEEEEDPKTSPKPKIIQTRRPGLPP 193

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

UNIPROTKB|Q8CH27 Rcan2 "Calcipressin-2" [Rattus norvegicus (taxid:10116)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/169 (47%), Positives = 106/169 (62%)

Query:    78 NDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVY 137
             N  +KE+ E L   + +  +FQ  KSFRR+R+N+    AAA+ARI LH++ F   K+ +Y
Sbjct:    25 NQEVKEKFEGLFRTYDECVTFQLFKSFRRVRINFSHPKAAARARIELHETQFRGKKLKLY 84

Query:   138 FVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTP 196
             F Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A L P
Sbjct:    85 FAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWKPISDATPVLNYDLLYAVAKLGP 144

Query:   197 GLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACPPTKP 238
             G  +ELHA +ES P +VVHVC       ED       +I+QT  P   P
Sbjct:   145 GEKYELHAGTESTPSVVVHVCDSDLEEEEDPKTSPKPKIIQTRRPGLPP 193

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

UNIPROTKB|Q5ZJV6 RCAN3 "Calcipressin-3" [Gallus gallus (taxid:9031)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 83/203 (40%), Positives = 123/203 (60%)

Query:    18 LKDT-GDMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYL 76
             L+DT     DS  DL + +Q  +  +I   N D F++      + T L      ++   +
Sbjct:     2 LRDTMKSWSDSQSDLYSSDQEEEEQMIFGENEDDFEEMMDLSDLPTSLFACSVHEAVFEV 61

Query:    77 KNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136
             + +  KE+ E L + +    +FQ  KSFRR+R+N+ +  AAA+ARI LH++ F+  K+ +
Sbjct:    62 QEE--KERFEALFTVYDNQVTFQLFKSFRRVRINFSNPEAAARARIELHETDFSGKKLKL 119

Query:   137 YFVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLT 195
             YF Q     +  D+ +L PP P KQFLISPP+SPPVGW+   ++ PL+NYDLL A++ L 
Sbjct:   120 YFAQVQVSSEVGDKSYLLPPQPVKQFLISPPASPPVGWKQSEDATPLINYDLLCAVSKLG 179

Query:   196 PGLSHELHAPSESQPGIVVHVCE 218
             PG  +ELHA +ES P +VVHVCE
Sbjct:   180 PGEKYELHAGTESTPSVVVHVCE 202

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0031013 "troponin I binding" evidence=IEA

UNIPROTKB|Q14206 RCAN2 "Calcipressin-2" [Homo sapiens (taxid:9606)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 80/169 (47%), Positives = 106/169 (62%)

Query:    78 NDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVY 137
             N  +KE+ E L   +    +FQ  KSFRR+R+N+ +  +AA+ARI LH++ F   K+ +Y
Sbjct:    25 NQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLY 84

Query:   138 FVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTP 196
             F Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A L P
Sbjct:    85 FAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWQPINDATPVLNYDLLYAVAKLGP 144

Query:   197 GLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACPPTKP 238
             G  +ELHA +ES P +VVHVC       ED       +I+QT  P   P
Sbjct:   145 GEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPP 193

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0007417 "central nervous system development" evidence=NAS

GO:0030346 "protein phosphatase 2B binding" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1858219 Rcan2 "regulator of calcineurin 2" [Mus musculus (taxid:10090)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 80/169 (47%), Positives = 106/169 (62%)

Query:    78 NDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVY 137
             N  +KE+ E L   + +  +FQ  KSFRR+R+N+    +AA+ARI LH++ F   K+ +Y
Sbjct:    25 NQEVKEKFEGLFRTYDECVTFQLFKSFRRVRINFSHPKSAARARIELHETQFRGKKLKLY 84

Query:   138 FVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTP 196
             F Q  TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A L P
Sbjct:    85 FAQVQTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWKPISDATPVLNYDLLYAVAKLGP 144

Query:   197 GLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACPPTKP 238
             G  +ELHA +ES P +VVHVC       ED       +I+QT  P   P
Sbjct:   145 GEKYELHAGTESTPSVVVHVCDSDMEEEEDPKTSPKPKIIQTRRPGLPP 193

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

RGD|1311826 Rcan3 "RCAN family member 3" [Rattus norvegicus (taxid:10116)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 83/198 (41%), Positives = 124/198 (62%)

Query:    22 GDMGDSLDDLINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDAL 81
             G+  D L+++++   LP SL   +++  +F+   ++EQ     S F    S   L    +
Sbjct:    30 GENEDDLEEMMDLSDLPTSLFACSVHEAVFE---VQEQKG--YSVFPPTLSAMLL---TV 81

Query:    82 KEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141
             +E+ E L + +    +FQ  KSFRR+R+N+    AAA+ARI LH+S F   K+ +YF Q 
Sbjct:    82 QERFEALFTLYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHESEFHGRKLKLYFAQV 141

Query:   142 MTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSH 200
                 ++ D+ +L PP PTKQFLISPP+SPPVGW+   ++ P++NYDLL A++ L PG  +
Sbjct:   142 QVSGEARDKSYLLPPQPTKQFLISPPASPPVGWKQSEDATPVINYDLLCAVSKLGPGEKY 201

Query:   201 ELHAPSESQPGIVVHVCE 218
             ELHA +ES P +VVHVCE
Sbjct:   202 ELHAGTESTPSVVVHVCE 219

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0031013 "troponin I binding" evidence=IEA;ISO

UNIPROTKB|Q3ZC15 RCAN2 "Calcipressin-2" [Bos taurus (taxid:9913)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 79/169 (46%), Positives = 106/169 (62%)

Query:    78 NDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVY 137
             N  +KE+ E L   +    +FQ  KSFRR+R+N+ +  +AA+ARI LH++ F   K+ +Y
Sbjct:    25 NQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLY 84

Query:   138 FVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTP 196
             F Q  TP    D+ HL PP P KQFLISPP+SPPVGW+P  ++ P++NYDLL A+A L P
Sbjct:    85 FAQVQTPETDGDKLHLAPPQPAKQFLISPPASPPVGWQPISDATPVLNYDLLYAVAKLGP 144

Query:   197 GLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACPPTKP 238
             G  +ELHA +ES P +VVHVC       ED       +I+QT  P   P
Sbjct:   145 GEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGPPP 193

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2RKP6 RCAN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 79/169 (46%), Positives = 106/169 (62%)

Query:    78 NDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVY 137
             N  +KE+ E L   +    +FQ  KSFRR+R+N+ +  +AA+ARI LH++ F   K+ +Y
Sbjct:    25 NQEVKEKFEGLFRTYDDCVTFQLFKSFRRVRINFSNPKSAARARIELHETQFRGKKLKLY 84

Query:   138 FVQPMTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTP 196
             F Q  TP    D+ HL PP P KQFLISPP+SPPVGW+P  ++ P++NYDLL A+A L P
Sbjct:    85 FAQVQTPETDGDKLHLAPPQPAKQFLISPPASPPVGWQPISDATPVLNYDLLYAVAKLGP 144

Query:   197 GLSHELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACPPTKP 238
             G  +ELHA +ES P +VVHVC       ED       +I+QT  P   P
Sbjct:   145 GEKYELHAGTESTPSVVVHVCDSDIEEEEDPKTSPKPKIIQTRRPGLPP 193

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1LTA6 Rcan2 "Calcipressin-2" [Rattus norvegicus (taxid:10116)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 80/165 (48%), Positives = 104/165 (63%)

Query:    82 KEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141
             KE+ E L   + +  +FQ  KSFRR+R+N+    AAA+ARI LH++ F   K+ +YF Q 
Sbjct:     6 KEKFEGLFRTYDECVTFQLFKSFRRVRINFSHPKAAARARIELHETQFRGKKLKLYFAQV 65

Query:   142 MTPFDSADQ-HLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLAAIASLTPGLSH 200
              TP    D+ HL PP P KQFLISPPSSPPVGW+P  ++ P++NYDLL A+A L PG  +
Sbjct:    66 QTPETDGDKLHLAPPQPAKQFLISPPSSPPVGWKPISDATPVLNYDLLYAVAKLGPGEKY 125

Query:   201 ELHAPSESQPGIVVHVC-------EDGAMVGTKRIMQTACPPTKP 238
             ELHA +ES P +VVHVC       ED       +I+QT  P   P
Sbjct:   126 ELHAGTESTPSVVVHVCDSDLEEEEDPKTSPKPKIIQTRRPGLPP 170

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XZL8	SRA_DROME	No assigned EC number	0.4497	0.8193	0.6678	yes	N/A
Q5RE25	RCAN2_PONAB	No assigned EC number	0.4674	0.6764	0.8172	yes	N/A
Q9JHG2	RCAN2_MOUSE	No assigned EC number	0.4674	0.6764	0.8172	yes	N/A
Q14206	RCAN2_HUMAN	No assigned EC number	0.4674	0.6764	0.8172	yes	N/A
P53806	RCANL_CAEEL	No assigned EC number	0.3230	0.7058	0.8115	yes	N/A
A5A6I8	RCAN2_PANTR	No assigned EC number	0.4674	0.6764	0.8172	yes	N/A
Q5ZJV6	RCAN3_CHICK	No assigned EC number	0.3955	0.9033	0.8634	yes	N/A
Q3ZC15	RCAN2_BOVIN	No assigned EC number	0.4615	0.6764	0.8172	yes	N/A
Q8CH27	RCAN2_RAT	No assigned EC number	0.4733	0.6764	0.8172	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	238
pfam04847	177	pfam04847, Calcipressin, Calcipressin	6e-49
cd12434	75	cd12434, RRM_RCAN_like, RNA recognition motif in r	3e-23
cd12708	93	cd12708, RRM_RCAN1, RNA recognition motif in verte	2e-14
cd12710	77	cd12710, RRM_RCAN3, RNA recognition motif in verte	1e-13
cd12709	77	cd12709, RRM_RCAN2, RNA recognition motif in verte	4e-13
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	1e-05
smart00360	73	smart00360, RRM, RNA recognition motif	5e-05
cd12380	80	cd12380, RRM3_I_PABPs, RNA recognition motif 3 fou	0.001
cd12355	80	cd12355, RRM_RBM18, RNA recognition motif in eukar	0.003
pfam00076	70	pfam00076, RRM_1, RNA recognition motif	0.003

>gnl|CDD|218290 pfam04847, Calcipressin, Calcipressin

 Score =  158 bits (401), Expect = 6e-49
 Identities = 82/169 (48%), Positives = 102/169 (60%), Gaps = 15/169 (8%)

Query: 81  LKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLH-QSVFASSKINVYFV 139
            K+++  L  Q+    +FQ LKSFRR+RVN+ S  AAA ARI LH  S F   ++ +YF 
Sbjct: 9   NKDKLRELFRQYNPIVTFQPLKSFRRVRVNFSSPEAAAAARIKLHEGSEFLGKELKLYFA 68

Query: 140 QPMTP-FDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEP---LVNYDLLAAIASLT 195
           QP  P   +A QHL PP P KQFLISPP+SPPVGWEP  E  P   ++N DL AA+A L 
Sbjct: 69  QPQHPERSAAKQHLAPPPPEKQFLISPPASPPVGWEPIEEDAPNRHVLNEDLQAALAKLG 128

Query: 196 PGLSHELHAPSESQPGIVVHVCE---------DGAMVGTKRIMQTACPP 235
           PG  +ELH   ++ P +VVHVCE         D      K I+QTA PP
Sbjct: 129 PGEKYELHPGDDTTPAVVVHVCESEIDGEEAGDTPRPKPK-IVQTARPP 176

Calcipressin is also known as calcineurin-binding protein, since it inhibits calcineurin-mediated transcriptional modulation by binding to calcineurin's catalytic domain. Length = 177

>gnl|CDD|240880 cd12434, RRM_RCAN_like, RNA recognition motif in regulators of calcineurin (RCANs) and similar proteins

 Score = 89.2 bits (222), Expect = 3e-23
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 25/100 (25%)

Query: 41  LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY 100
           LI+TN+  ++F                          N  LK  +E+L S +G+  +F Y
Sbjct: 1   LIVTNVPSEVFT-------------------------NAELKAALESLFSSYGEIATFVY 35

Query: 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ 140
           L SFRR RV + S   AA ARI LH +VF  S + VYF Q
Sbjct: 36  LPSFRRARVVFSSPEEAALARIELHGTVFEGSVLRVYFGQ 75

This subfamily corresponds to the RRM of RCANs, a novel family of calcineurin regulators that are key factors contributing to Down syndrome in humans. They can stimulate and inhibit the Ca2+/calmodulin-dependent phosphatase calcineurin (also termed PP2B or PP3C) signaling in vivo through direct interactions with its catalytic subunit. Overexpressed RCANs may bind and inhibit calcineurin. In contrast, low levels of phosphorylated RCANs may stimulate the calcineurin signaling. RCANs are characterized by harboring a central short, unique serine-proline motif containing FLIISPPxSPP box, which is strongly conserved from yeast to human but is absent in bacteria. They consist of an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a highly conserved SP repeat domain containing the phosphorylation site by GSK-3, a well-known PxIxIT motif responsible for docking many substrates to calcineurin, and an unrecognized C-terminal TxxP motif of unknown function. . Length = 75

>gnl|CDD|241152 cd12708, RRM_RCAN1, RNA recognition motif in vertebrate regulator of calcineurin 1 (RCAN1)

 Score = 66.5 bits (162), Expect = 2e-14
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 81  LKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ 140
            + + E+L   + +  +FQY KSF+R+R+N+ +  +AA+AR  LH++ F   +I +YF Q
Sbjct: 18  TRAKFESLFRAYDRDVTFQYFKSFKRVRINFSNPLSAAEARAQLHKTEFLGKEIKLYFAQ 77

Query: 141 PMTPFDSADQHLQPPAPTK 159
            +        HL PP P K
Sbjct: 78  TL---HIGSPHLAPPNPDK 93

This subgroup corresponds to the RRM of RCAN1, also termed calcipressin-1, or Adapt78, or Down syndrome critical region protein 1, or myocyte-enriched calcineurin-interacting protein 1 (MCIP1), encoded by the Down syndrome critical region 1 (DSCR1) gene that is abundantly expressed in human brain, heart and muscles. Overexpressed RCAN1 functions as an inhibitor of the Ca2+/calmodulin-dependent phosphatase calcineurin (also termed PP2B or PP3C), and is associated with Alzheimer's disease (AD) and Down syndrome (DS). RCAN1 can be phosphorylated by several kinases such as big MAP kinase 1 (BMK1), glycogen synthase kinase-3 (GSK-3), NF-kappaB inducing kinase (NIK), and protein kinase A (PKA). The phosphorylation of RCAN1 can positively or negatively regulate calcineurin-mediated gene transcription, and also affect its protein stability in the ubiquitin-proteasome pathway. RCAN1 consists of an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a highly conserved SP repeat domain containing the phosphorylation site by GSK-3, a well-known PxIxIT motif responsible for docking many substrates to calcineurin, and an unrecognized C-terminal TxxP motif of unknown function. . Length = 93

>gnl|CDD|241154 cd12710, RRM_RCAN3, RNA recognition motif in vertebrate regulator of calcineurin 3 (RCAN3)

 Score = 63.9 bits (155), Expect = 1e-13
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 82  KEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ 140
           KE+ E L   +    SFQ  KSFRR+R+N+ +  AAA+ARI LH+S F   K+ +YF Q
Sbjct: 19  KERFEALFRIYDDQVSFQMFKSFRRVRINFSNPEAAARARIELHESDFNGKKLKLYFAQ 77

This subgroup corresponds to the RRM of RCAN3, also termed calcipressin-3, or Down syndrome candidate region 1-like protein 2 (DSCR1L2), or myocyte-enriched calcineurin-interacting protein 3 (MCIP3), encoded by a ubiquitously expressed DSCR1L2 gene. Overexpressed RCAN3 binds and inhibits the Ca2+/calmodulin-dependent phosphatase calcineurin (also termed PP2B or PP3C), and further down-regulates nuclear factor of activated T cells (NFAT)-dependent cytokine gene expression in activated human Jurkat T cells. Moreover, RCAN3 interacts with cardiac troponin I (TNNI3), a heart-specific inhibitory subunit of the troponin complex, and may play a role in cardiac contraction. RCAN3 consists of an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a highly conserved SP repeat domain containing the phosphorylation site by GSK-3, a well-known PxIxIT motif responsible for docking many substrates to calcineurin, and an unrecognized C-terminal TxxP motif of unknown function. . Length = 77

>gnl|CDD|241153 cd12709, RRM_RCAN2, RNA recognition motif in vertebrate regulator of calcineurin 2 (RCAN2)

 Score = 62.3 bits (151), Expect = 4e-13
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 76  LKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKIN 135
             +  +KE+ E L   +    +FQ  KSFRR+R+N+ +  AAA+ARI LH++ F   K+ 
Sbjct: 13  FTSREVKEKFEGLFRAYDDCVTFQLFKSFRRVRINFSNPKAAARARIELHETQFRGKKLK 72

Query: 136 VYFVQ 140
           +YF Q
Sbjct: 73  LYFAQ 77

This subgroup corresponds to the RRM of RCAN2, also termed calcipressin-2, or Down syndrome candidate region 1-like 1 (DSCR1L1), or myocyte-enriched calcineurin-interacting protein 2 (MCIP2), or thyroid hormone-responsive protein ZAKI-4, encoded by a novel thyroid hormone-responsive gene ZAKI-4 that is abundantly expressed in human brain, heart and muscles. RCAN2 binds to the catalytic subunit of Ca2+/calmodulin-dependent phosphatase calcineurin (also termed PP2B or PP3C), calcineurin A, and inhibits its phosphatase activity through its C-terminal region. RCAN2 consists of an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a highly conserved SP repeat domain containing the phosphorylation site by GSK-3, a well-known PxIxIT motif responsible for docking many substrates to calcineurin, and an unrecognized C-terminal TxxP motif of unknown function. . Length = 77

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 25/96 (26%)

Query: 41  LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY 100
           L + NL PD       +E +  L S+FG+ +S + +++              GK K F  
Sbjct: 1   LFVGNLPPDT-----TEEDLRELFSKFGEIESVRIVRDKD------------GKSKGF-- 41

Query: 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136
                   V +ES   A KA   L+       K+ V
Sbjct: 42  ------AFVEFESPEDAEKALEALNGKELDGRKLKV 71

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 24/97 (24%)

Query: 40  SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQ 99
           +L + NL PD       +E++  L S+FGK +S + +++            + GK K F 
Sbjct: 1   TLFVGNLPPD-----TTEEELRELFSKFGKVESVRLVRD-----------KETGKSKGFA 44

Query: 100 YLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136
           +        V +ES   A KA   L+        + V
Sbjct: 45  F--------VEFESEEDAEKALEALNGKELDGRPLKV 73

Length = 73

>gnl|CDD|240826 cd12380, RRM3_I_PABPs, RNA recognition motif 3 found in type I polyadenylate-binding proteins

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 25/83 (30%)

Query: 43  ITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK 102
           + NL  D   D+ LKE    L  ++GK  S + +K+D             GK K F +  
Sbjct: 6   VKNLGED-MDDEKLKE----LFGKYGKITSAKVMKDDE------------GKSKGFGF-- 46

Query: 103 SFRRMRVNYESSAAAAKARINLH 125
                 VN+E+  AA KA   L+
Sbjct: 47  ------VNFENHEAAQKAVEELN 63

This subfamily corresponds to the RRM3 of type I poly(A)-binding proteins (PABPs), highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. The family represents type I polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 1 (PABP-1 or PABPC1), polyadenylate-binding protein 3 (PABP-3 or PABPC3), polyadenylate-binding protein 4 (PABP-4 or APP-1 or iPABP), polyadenylate-binding protein 5 (PABP-5 or PABPC5), polyadenylate-binding protein 1-like (PABP-1-like or PABPC1L), polyadenylate-binding protein 1-like 2 (PABPC1L2 or RBM32), polyadenylate-binding protein 4-like (PABP-4-like or PABPC4L), yeast polyadenylate-binding protein, cytoplasmic and nuclear (PABP or ACBP-67), and similar proteins. PABP-1 is an ubiquitously expressed multifunctional protein that may play a role in 3' end formation of mRNA, translation initiation, mRNA stabilization, protection of poly(A) from nuclease activity, mRNA deadenylation, inhibition of mRNA decapping, and mRNP maturation. Although PABP-1 is thought to be a cytoplasmic protein, it is also found in the nucleus. PABP-1 may be involved in nucleocytoplasmic trafficking and utilization of mRNP particles. PABP-1 contains four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a less well conserved linker region, and a proline-rich C-terminal conserved domain (CTD). PABP-3 is a testis-specific poly(A)-binding protein specifically expressed in round spermatids. It is mainly found in mammalian and may play an important role in the testis-specific regulation of mRNA homeostasis. PABP-3 shows significant sequence similarity to PABP-1. However, it binds to poly(A) with a lower affinity than PABP-1. PABP-1 possesses an A-rich sequence in its 5'-UTR and allows binding of PABP and blockage of translation of its own mRNA. In contrast, PABP-3 lacks the A-rich sequence in its 5'-UTR. PABP-4 is an inducible poly(A)-binding protein (iPABP) that is primarily localized to the cytoplasm. It shows significant sequence similarity to PABP-1 as well. The RNA binding properties of PABP-1 and PABP-4 appear to be identical. PABP-5 is encoded by PABPC5 gene within the X-specific subinterval, and expressed in fetal brain and in a range of adult tissues in mammalian, such as ovary and testis. It may play an important role in germ cell development. Moreover, unlike other PABPs, PABP-5 contains only four RRMs, but lacks both the linker region and the CTD. PABP-1-like and PABP-1-like 2 are the orthologs of PABP-1. PABP-4-like is the ortholog of PABP-5. Their cellular functions remain unclear. The family also includes the yeast PABP, a conserved poly(A) binding protein containing poly(A) tails that can be attached to the 3'-ends of mRNAs. The yeast PABP and its homologs may play important roles in the initiation of translation and in mRNA decay. Like vertebrate PABP-1, the yeast PABP contains four RRMs, a linker region, and a proline-rich CTD as well. The first two RRMs are mainly responsible for specific binding to poly(A). The proline-rich region may be involved in protein-protein interactions. . Length = 80

>gnl|CDD|240801 cd12355, RRM_RBM18, RNA recognition motif in eukaryotic RNA-binding protein 18 and similar proteins

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 41  LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY 100
           L I NL+  L +   LK     L S++GK K F +L + +   +        G+P+ + +
Sbjct: 2   LWIGNLDSRLTEFHLLK-----LFSKYGKIKKFDFLFHKSGPLK--------GQPRGYCF 48

Query: 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV 136
                   V +E+   A KA  +L+       K+ V
Sbjct: 49  --------VTFETKEEAEKALKSLNGKTALGKKLVV 76

This subfamily corresponds to the RRM of RBM18, a putative RNA-binding protein containing a well-conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The biological role of RBM18 remains unclear. . Length = 80

>gnl|CDD|215696 pfam00076, RRM_1, RNA recognition motif

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 25/94 (26%)

Query: 41  LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY 100
           L + NL PD       +E ++ L S+FG  +S + +  D           + G+ K F +
Sbjct: 1   LFVGNLPPD-----TTEEDLKDLFSKFGPIESIR-IVRD-----------ETGRSKGFAF 43

Query: 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKI 134
                   V +E    A KA   L+       ++
Sbjct: 44  --------VEFEDEEDAEKALEALNGKELGGREL 69

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG4019|consensus	193		100.0
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	100.0
KOG4206|consensus	221		99.71
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	98.47
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.2
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	97.93
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.92
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.92
smart00362	72	RRM_2 RNA recognition motif.	97.91
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.88
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	97.85
KOG0114|consensus	124		97.81
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.76
KOG0148|consensus	321		97.75
COG0724	306	RNA-binding proteins (RRM domain) [General functio	97.74
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	97.71
KOG0125|consensus	376		97.63
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.63
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.62
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.53
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.53
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.53
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.52
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.5
smart00360	71	RRM RNA recognition motif.	97.45
PLN03120	260	nucleic acid binding protein; Provisional	97.38
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.33
KOG0109|consensus	346		97.3
smart00361	70	RRM_1 RNA recognition motif.	97.15
KOG0148|consensus	321		97.1
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	97.08
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	97.07
KOG0122|consensus	270		97.04
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	96.97
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	96.82
PLN03121	243	nucleic acid binding protein; Provisional	96.66
KOG0107|consensus	195		96.58
KOG1190|consensus	492		96.53
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	96.47
KOG0117|consensus	506		96.4
KOG1457|consensus	284		96.34
KOG0110|consensus	725		96.32
KOG1190|consensus	492		96.31
KOG4660|consensus	549		96.25
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	96.25
KOG0130|consensus	170		96.2
KOG0105|consensus	241		96.11
PLN03213	759	repressor of silencing 3; Provisional	96.02
KOG0415|consensus	479		96.01
KOG0533|consensus	243		96.0
KOG0153|consensus	377		95.81
KOG4207|consensus	256		95.67
KOG0132|consensus	894		95.53
KOG0123|consensus	369		95.33
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	95.2
KOG4212|consensus	608		94.93
KOG0111|consensus	298		94.73
KOG0108|consensus	435		94.64
KOG0123|consensus	369		94.44
KOG0145|consensus	360		94.22
KOG0110|consensus	725		94.19
KOG1456|consensus	494		93.71
KOG0131|consensus	203		93.37
KOG0151|consensus	877		93.34
KOG0144|consensus	510		92.98
KOG0131|consensus	203		92.85
KOG0127|consensus	678		92.78
KOG0147|consensus	549		92.71
KOG0127|consensus	678		92.49
KOG0121|consensus	153		92.24
KOG4206|consensus	221		90.56
KOG0117|consensus	506		90.46
KOG0149|consensus	247		90.41
KOG0113|consensus	335		90.23
KOG0109|consensus	346		89.49
KOG0144|consensus	510		88.89
KOG4212|consensus	608		88.71
KOG1855|consensus	484		87.91
KOG0145|consensus	360		87.48
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	86.47
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	86.26
KOG0120|consensus	500		85.33
COG5175	480	MOT2 Transcriptional repressor [Transcription]	85.12
KOG1457|consensus	284		84.82
KOG0106|consensus	216		81.17
KOG1548|consensus	382		80.35
KOG1996|consensus	378		80.34

>KOG4019|consensus

Probab=100.00  E-value=2.1e-47  Score=326.19  Aligned_cols=181  Identities=46%  Similarity=0.792  Sum_probs=165.5

Q ss_pred             ccCCCCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEE
Q psy258           31 LINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVN  110 (238)
Q Consensus        31 ~~~~~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVV  110 (238)
                      .|+..|||+|+++|++++.+|.....+..+++||+                         +|++.+.|+.||+|||++|+
T Consensus         3 ~v~~~dlp~~~~~c~i~~~VF~~~~~k~~~~~lFr-------------------------q~n~~~~fq~lrsfrrvRi~   57 (193)
T KOG4019|consen    3 EVDTDDLPTAIIACDIHEEVFVNREDKALFENLFR-------------------------QINEDATFQLLRSFRRVRIN   57 (193)
T ss_pred             ccccccccceeeeecccHHhhccHHHHHHHHhHHh-------------------------hhCcchHHHHHHhhceeEEe
Confidence            45667999999999999999998889999999999                         67999999999999999999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCc-ceEEEEeCCCCCCCCCCCccCCCCCCcceeeCCCCCCCCCCCCCCCCCCCCcHHHHH
Q psy258          111 YESSAAAAKARINLHQSVFASS-KINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPLVNYDLLA  189 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~-~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLISPP~SPP~gWe~~~E~~P~~~~DL~~  189 (238)
                      |.+..+|+.||..+++..|.|+ .+++||+|..+... .++||++|.++||||||||+|||+||+++.|++|++|+||++
T Consensus        58 f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~~-~~q~L~pP~~eKqFLISPPaSPPvgWe~~eda~P~~n~dLl~  136 (193)
T KOG4019|consen   58 FSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPES-NSQYLQPPEPEKQFLISPPASPPVGWEPIEDAPPVVNQDLLA  136 (193)
T ss_pred             ccChhHHHHHHHHhhhcccCCCceEEEEEccCCCccc-cccccCCCChhhceeecCCCCCCCCCcccccCCccccHHHHH
Confidence            9999999999999999999998 89999999976643 339999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCccccCCCCCCCCcEEEEecCCCCcC--------Ccc-cccccCCCCCC
Q psy258          190 AIASLTPGLSHELHAPSESQPGIVVHVCEDGAMV--------GTK-RIMQTACPPTK  237 (238)
Q Consensus       190 ala~L~~ge~~el~~~~~~~PsIvV~~ce~~~~~--------~~~-~i~~T~rPp~~  237 (238)
                      |+++|++|++||||.+++.+|+||||.|++....        .++ +|+||+||..+
T Consensus       137 ~iq~~~~~e~~eLhn~~e~~P~ivvh~~~s~~e~~~~~~~~~~p~~~~~Qt~~p~~p  193 (193)
T KOG4019|consen  137 AIQKLGPGEKYELHNGTEKTPSIVVHVCESKIEAITEEEMPTNPKNKIMQTRRPEFP  193 (193)
T ss_pred             HHHHhCccccccccCCCCCCCceEEEeccCccccccccccCCCCCCccccccCCCCC
Confidence            9999999999999999999999999999775221        234 89999999764

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=100.00  E-value=9.8e-47  Score=324.47  Aligned_cols=146  Identities=52%  Similarity=0.809  Sum_probs=44.8

Q ss_pred             hcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhc--CCccCCcceEEEEeCCCCC-CCCCCCccCCCCCCcceeeCCCC
Q psy258           91 QFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLH--QSVFASSKINVYFVQPMTP-FDSADQHLQPPAPTKQFLISPPS  167 (238)
Q Consensus        91 ~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~--~~~f~g~~lrIyFAq~~t~-~~~~~~~L~~P~~~K~FLISPP~  167 (238)
                      +|+++++|++||+||||+|+|.+.++|++||+.|+  +..|+|+.+|+||++..+. .+..++||++|+++|+||||||+
T Consensus        18 ~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~~~~~~~~~L~~P~~~K~FLISPP~   97 (184)
T PF04847_consen   18 TYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPIEDDSEKQYLEPPKPEKQFLISPPP   97 (184)
T ss_dssp             TT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS------S--S---------------
T ss_pred             hcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccccccccccccCCCCccceeeecCCC
Confidence            88999999999999999999999999999999999  8999999999999988443 24678999999999999999999


Q ss_pred             CCCCCCCCCCCCCC---CCcHHHHHHHHhcCCCCccccCCCCCCCCcEEE-----EecCCCCc---------CCcc-ccc
Q psy258          168 SPPVGWEPRPESEP---LVNYDLLAAIASLTPGLSHELHAPSESQPGIVV-----HVCEDGAM---------VGTK-RIM  229 (238)
Q Consensus       168 SPP~gWe~~~E~~P---~~~~DL~~ala~L~~ge~~el~~~~~~~PsIvV-----~~ce~~~~---------~~~~-~i~  229 (238)
                      |||+||++++|++|   ++++||++||++|++|+++|+|.++.+.|+|+|     |+|++...         ...+ +|+
T Consensus        98 SPP~gWe~~~E~~PN~~~~~~DL~~aLa~L~~~e~~el~~~~~~~psi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (184)
T PF04847_consen   98 SPPVGWEPRCEDPPNKEVHAEDLAHALAKLGPGESSELHPGNESGPSIVVPAVDSEDCEDEIDEEEADMSPPPSPKPKIA  177 (184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCcccccCCCCcccChHHHHHHHHHhcccCccccccCCCCCCccceecccccccccCccccccccCCCCCCCCCcC
Confidence            99999999999999   689999999999999999999999999999999     88865511         1223 789


Q ss_pred             ccCCCCC
Q psy258          230 QTACPPT  236 (238)
Q Consensus       230 ~T~rPp~  236 (238)
                      ||+|||+
T Consensus       178 ~T~rPp~  184 (184)
T PF04847_consen  178 QTARPPV  184 (184)
T ss_dssp             -------
T ss_pred             cCCCcCC
Confidence            9999995

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG4206|consensus

Probab=99.71  E-value=1.2e-17  Score=147.13  Aligned_cols=122  Identities=24%  Similarity=0.266  Sum_probs=96.7

Q ss_pred             CCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           36 QLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        36 ~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      -.|+ ||||.|||++|-. ++|+++|+.||+|||+|+                      .++.+..+|..|+++|+|.+.
T Consensus         6 ~~pn~TlYInnLnekI~~-~elkrsL~~LFsqfG~il----------------------dI~a~kt~KmRGQA~VvFk~~   62 (221)
T KOG4206|consen    6 VNPNGTLYINNLNEKIKK-DELKRSLYLLFSQFGKIL----------------------DISAFKTPKMRGQAFVVFKET   62 (221)
T ss_pred             cCCCceEeehhccccccH-HHHHHHHHHHHHhhCCeE----------------------EEEecCCCCccCceEEEecCh
Confidence            3466 9999999999999 899999999999999988                      788888888899999999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCCCCCCCCC-CC-------------cc---CCCCCCcceeeCCCCCCCCCCCCCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQPMTPFDSA-DQ-------------HL---QPPAPTKQFLISPPSSPPVGWEPRP  177 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~-~~-------------~L---~~P~~~K~FLISPP~SPP~gWe~~~  177 (238)
                      ++|..|++.|+|++|+|++|||+||++++.+... +.             .-   +.+.....|..++...=|+.+ ...
T Consensus        63 ~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~  141 (221)
T KOG4206|consen   63 EAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQ  141 (221)
T ss_pred             hHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-ccc
Confidence            9999999999999999999999999987764211 11             11   344456667766666555555 234


Q ss_pred             CCCC
Q psy258          178 ESEP  181 (238)
Q Consensus       178 E~~P  181 (238)
                      ..+|
T Consensus       142 ~~pp  145 (221)
T KOG4206|consen  142 MAPP  145 (221)
T ss_pred             CCCC
Confidence            4455

>PF13893 RRM_5: RNA recognition motif

Probab=98.47  E-value=6.9e-07  Score=61.49  Aligned_cols=52  Identities=27%  Similarity=0.351  Sum_probs=46.5

Q ss_pred             hhhhcCCceEEEecCCC-CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258           88 LLSQFGKPKSFQYLKSF-RRMRVNYESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus        88 ~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      +++.||++..+...+.- +.++|.|.+.++|..|...|++..|+|+.++|+||
T Consensus         4 ~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    4 LFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             HhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            44477888889988888 99999999999999999999999999999999996

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PF00076 RRM_1: RNA recognition motif

Probab=98.20  E-value=3.3e-06  Score=58.65  Aligned_cols=65  Identities=34%  Similarity=0.460  Sum_probs=50.3

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCCHH
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYESSA  115 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~~e  115 (238)
                      |||.|||..+-.     +.|+.+|++||+                         +..+...+     +-+.++|.|.+.+
T Consensus         1 l~v~nlp~~~t~-----~~l~~~f~~~g~-------------------------i~~~~~~~~~~~~~~~~a~V~F~~~~   50 (70)
T PF00076_consen    1 LYVGNLPPDVTE-----EELRDFFSQFGK-------------------------IESIKVMRNSSGKSKGYAFVEFESEE   50 (70)
T ss_dssp             EEEESETTTSSH-----HHHHHHHHTTST-------------------------EEEEEEEEETTSSEEEEEEEEESSHH
T ss_pred             cEEcCCCCcCCH-----HHHHHHHHHhhh-------------------------cccccccccccccccceEEEEEcCHH
Confidence            799999986555     466678886655                         43444333     2367999999999


Q ss_pred             HHHHHHHHhcCCccCCcceE
Q psy258          116 AAAKARINLHQSVFASSKIN  135 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lr  135 (238)
                      +|..|...+++..++|..+|
T Consensus        51 ~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen   51 DAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             HHHHHHHHHTTEEETTEEEE
T ss_pred             HHHHHHHHcCCCEECccCcC
Confidence            99999999999999987765

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=97.93  E-value=7.3e-05  Score=61.96  Aligned_cols=99  Identities=15%  Similarity=0.183  Sum_probs=68.3

Q ss_pred             eeccCCCCCCCCCC---CcccccCC-CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHh
Q psy258           13 NAIDNLKDTGDMGD---SLDDLIND-EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETL   88 (238)
Q Consensus        13 ~~~~~~~~~~~~~~---~~~~~~~~-~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~   88 (238)
                      |+.+||=-+...+.   ..+.+... ....++|||.||+..+=+     +.|+.+|++||+                   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te-----~~L~~~F~~~G~-------------------   60 (144)
T PLN03134          5 NKLGGLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDD-----ASLRDAFAHFGD-------------------   60 (144)
T ss_pred             hhhhhhhcccccCCCCCccccccccccCCCCEEEEeCCCCCCCH-----HHHHHHHhcCCC-------------------
Confidence            45555544443311   22333332 345679999999986533     456677886654                   


Q ss_pred             hhhcCCceEEEec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258           89 LSQFGKPKSFQYL------KSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus        89 ~~~~~~iv~fv~L------kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                            +..+...      ++.+=++|.|.+.++|+.|...|++..+.+..++|.++..
T Consensus        61 ------I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~  113 (144)
T PLN03134         61 ------VVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND  113 (144)
T ss_pred             ------eEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence                  4444443      3446699999999999999999999999999999999865

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.92  E-value=1.9e-05  Score=74.21  Aligned_cols=73  Identities=22%  Similarity=0.402  Sum_probs=58.2

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      ++|||.||+..+-+     +.|+++|++||                         ++.++...+      +.+=++|.|.
T Consensus       108 ~~LfVgnLp~~~te-----~~L~~lF~~~G-------------------------~V~~v~i~~d~~tg~srGyaFVeF~  157 (346)
T TIGR01659       108 TNLIVNYLPQDMTD-----RELYALFRTIG-------------------------PINTCRIMRDYKTGYSFGYAFVDFG  157 (346)
T ss_pred             cEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEecCCCCccCcEEEEEEc
Confidence            59999999986544     45677888554                         454444432      3456999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..+.+++|+|.|+++
T Consensus       158 ~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p  186 (346)
T TIGR01659       158 SEADSQRAIKNLNGITVRNKRLKVSYARP  186 (346)
T ss_pred             cHHHHHHHHHHcCCCccCCceeeeecccc
Confidence            99999999999999999999999999876

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.92  E-value=4.7e-05  Score=69.31  Aligned_cols=72  Identities=19%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~~  113 (238)
                      +|+|.||+..+=     .+.|+.+|++||+                         +.....++      +.|=++|.|.+
T Consensus       271 ~lfV~NL~~~~~-----e~~L~~~F~~fG~-------------------------v~~v~i~~d~~t~~skG~aFV~F~~  320 (352)
T TIGR01661       271 CIFVYNLSPDTD-----ETVLWQLFGPFGA-------------------------VQNVKIIRDLTTNQCKGYGFVSMTN  320 (352)
T ss_pred             EEEEeCCCCCCC-----HHHHHHHHHhCCC-------------------------eEEEEEeEcCCCCCccceEEEEECC
Confidence            599999997642     3456688886655                         44544443      34568999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|.+|+..|+|..|.|+.|+|.|+..
T Consensus       321 ~~~A~~Ai~~lnG~~~~gr~i~V~~~~~  348 (352)
T TIGR01661       321 YDEAAMAILSLNGYTLGNRVLQVSFKTN  348 (352)
T ss_pred             HHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence            9999999999999999999999999765

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>smart00362 RRM_2 RNA recognition motif

Probab=97.91  E-value=6.8e-05  Score=50.64  Aligned_cols=67  Identities=30%  Similarity=0.407  Sum_probs=50.0

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC----CCeEEEEeCCHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS----FRRMRVNYESSA  115 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS----F~RiiVVF~~~e  115 (238)
                      ||+|+||+..+-.     +.|+.+|++|                         |.+..+...+.    .+-++|.|.+.+
T Consensus         1 ~v~i~~l~~~~~~-----~~l~~~~~~~-------------------------g~v~~~~~~~~~~~~~~~~~v~f~~~~   50 (72)
T smart00362        1 TLFVGNLPPDVTE-----EDLKELFSKF-------------------------GPIESVKIPKDTGKSKGFAFVEFESEE   50 (72)
T ss_pred             CEEEcCCCCcCCH-----HHHHHHHHhc-------------------------CCEEEEEEecCCCCCCceEEEEeCCHH
Confidence            6899999875433     3555677755                         44555555544    378999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEE
Q psy258          116 AAAKARINLHQSVFASSKINV  136 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrI  136 (238)
                      .|.+|...+++..+.|..+++
T Consensus        51 ~a~~a~~~~~~~~~~~~~i~v   71 (72)
T smart00362       51 DAEKAIEALNGTKLGGRPLRV   71 (72)
T ss_pred             HHHHHHHHhCCcEECCEEEee
Confidence            999999999998888876654

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.88  E-value=4.4e-05  Score=69.45  Aligned_cols=75  Identities=25%  Similarity=0.371  Sum_probs=60.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      .++|||.|||..+-+     +.|+.+|++|                         |++.++..++      +.|=++|.|
T Consensus         3 ~~~l~V~nLp~~~~e-----~~l~~~F~~~-------------------------G~i~~v~i~~d~~~g~s~g~afV~f   52 (352)
T TIGR01661         3 KTNLIVNYLPQTMTQ-----EEIRSLFTSI-------------------------GEIESCKLVRDKVTGQSLGYGFVNY   52 (352)
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHcc-------------------------CCEEEEEEEEcCCCCccceEEEEEE
Confidence            579999999987766     3566788855                         5555555543      334599999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|...|++..+.|+.++|.|+++.
T Consensus        53 ~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~   83 (352)
T TIGR01661        53 VRPEDAEKAVNSLNGLRLQNKTIKVSYARPS   83 (352)
T ss_pred             CcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence            9999999999999999999999999999873

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=97.85  E-value=0.00011  Score=49.81  Aligned_cols=69  Identities=29%  Similarity=0.437  Sum_probs=52.3

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEeCCH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNYESS  114 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF~~~  114 (238)
                      +|+|+||+..+-.     +.++.+|++|                         |++..+...+.     .+.++|.|.+.
T Consensus         1 ~i~i~~l~~~~~~-----~~i~~~~~~~-------------------------g~i~~~~~~~~~~~~~~~~~~v~f~s~   50 (74)
T cd00590           1 TLFVGNLPPDVTE-----EDLRELFSKF-------------------------GKVESVRIVRDKDTKSKGFAFVEFEDE   50 (74)
T ss_pred             CEEEeCCCCccCH-----HHHHHHHHhc-------------------------CCEEEEEEeeCCCCCcceEEEEEECCH
Confidence            5889999876332     4566666644                         55555555543     67899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEE
Q psy258          115 AAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      +.|.+|...+++..+.|..+.+.+
T Consensus        51 ~~a~~a~~~~~~~~~~~~~~~v~~   74 (74)
T cd00590          51 EDAEKALEALNGKELGGRPLRVEF   74 (74)
T ss_pred             HHHHHHHHHhCCCeECCeEEEEeC
Confidence            999999999999989988887754

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>KOG0114|consensus

Probab=97.81  E-value=0.0001  Score=59.61  Aligned_cols=72  Identities=24%  Similarity=0.247  Sum_probs=58.2

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESSAA  116 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~ea  116 (238)
                      -|||+|||-+|-     ++++++||..|                         |.+.++..--   .-|-++|||+++..
T Consensus        20 iLyirNLp~~IT-----seemydlFGky-------------------------g~IrQIRiG~~k~TrGTAFVVYedi~d   69 (124)
T KOG0114|consen   20 ILYIRNLPFKIT-----SEEMYDLFGKY-------------------------GTIRQIRIGNTKETRGTAFVVYEDIFD   69 (124)
T ss_pred             eEEEecCCcccc-----HHHHHHHhhcc-------------------------cceEEEEecCccCcCceEEEEehHhhh
Confidence            799999997654     46889999954                         5566665543   45889999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|.+.|.|+.+.+..+++-|-++
T Consensus        70 Ak~A~dhlsg~n~~~ryl~vlyyq~   94 (124)
T KOG0114|consen   70 AKKACDHLSGYNVDNRYLVVLYYQP   94 (124)
T ss_pred             HHHHHHHhcccccCCceEEEEecCH
Confidence            9999999999999888888777554

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.76  E-value=0.00011  Score=71.37  Aligned_cols=73  Identities=12%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             CcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-CCeEEEEeCCHHH
Q psy258           39 KSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-FRRMRVNYESSAA  116 (238)
Q Consensus        39 ~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-F~RiiVVF~~~ea  116 (238)
                      ++|||.||+. .+=.     +.|+.||++|                         |++..+..++. -+-++|.|.+.++
T Consensus       276 ~~l~v~nL~~~~vt~-----~~L~~lF~~y-------------------------G~V~~vki~~~~~g~afV~f~~~~~  325 (481)
T TIGR01649       276 SVLMVSGLHQEKVNC-----DRLFNLFCVY-------------------------GNVERVKFMKNKKETALIEMADPYQ  325 (481)
T ss_pred             CEEEEeCCCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEeCCCCEEEEEECCHHH
Confidence            4999999996 3422     4677888855                         55666666654 3679999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|...|++..+.|+.|+|.|++.
T Consensus       326 A~~Ai~~lng~~l~g~~l~v~~s~~  350 (481)
T TIGR01649       326 AQLALTHLNGVKLFGKPLRVCPSKQ  350 (481)
T ss_pred             HHHHHHHhCCCEECCceEEEEEccc
Confidence            9999999999999999999999876

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0148|consensus

Probab=97.75  E-value=7.8e-05  Score=68.59  Aligned_cols=86  Identities=16%  Similarity=0.268  Sum_probs=73.2

Q ss_pred             CCcccccCCCCCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC
Q psy258           26 DSLDDLINDEQLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF  104 (238)
Q Consensus        26 ~~~~~~~~~~~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF  104 (238)
                      -++||..+.+.--| |+|+-|++. ... ++   .|+.+|+                         .||+|.++..+|.-
T Consensus       151 ltfdeV~NQssp~NtsVY~G~I~~-~lt-e~---~mr~~Fs-------------------------~fG~I~EVRvFk~q  200 (321)
T KOG0148|consen  151 LTFDEVYNQSSPDNTSVYVGNIAS-GLT-ED---LMRQTFS-------------------------PFGPIQEVRVFKDQ  200 (321)
T ss_pred             ccHHHHhccCCCCCceEEeCCcCc-ccc-HH---HHHHhcc-------------------------cCCcceEEEEeccc
Confidence            57889888765333 999999987 222 22   3466777                         77899999999999


Q ss_pred             CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          105 RRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       105 ~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |=++|-|++.|+|+.|...+++..+.|...||++++.
T Consensus       201 GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe  237 (321)
T KOG0148|consen  201 GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE  237 (321)
T ss_pred             ceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence            9999999999999999999999999999999999987

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=97.74  E-value=9.1e-05  Score=61.26  Aligned_cols=80  Identities=26%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..||+|.||+..+-     .+.|+.+|.+||.+.                   ...-...-..-++.|-++|.|.+.+.|
T Consensus       115 ~~~l~v~nL~~~~~-----~~~l~~~F~~~g~~~-------------------~~~~~~d~~~~~~~g~~~v~f~~~~~~  170 (306)
T COG0724         115 NNTLFVGNLPYDVT-----EEDLRELFKKFGPVK-------------------RVRLVRDRETGKSRGFAFVEFESEESA  170 (306)
T ss_pred             CceEEEeCCCCCCC-----HHHHHHHHHhcCcee-------------------EEEeeeccccCccCceEEEEecCHHHH
Confidence            57999999996444     357778999887763                   111111113456778999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ..|...+++..|.|+.++|.+++.
T Consensus       171 ~~a~~~~~~~~~~~~~~~v~~~~~  194 (306)
T COG0724         171 EKAIEELNGKELEGRPLRVQKAQP  194 (306)
T ss_pred             HHHHHHcCCCeECCceeEeecccc
Confidence            999999999999999999999653

>PF14259 RRM_6: RNA recognition motif (a

Probab=97.71  E-value=0.00011  Score=51.92  Aligned_cols=65  Identities=23%  Similarity=0.337  Sum_probs=49.0

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEeCCHH
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNYESSA  115 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF~~~e  115 (238)
                      |+|.|||..+-     .+.|+.+|+                         .||.+..+...+.     .+.++|.|.+.+
T Consensus         1 v~i~nlp~~~~-----~~~l~~~f~-------------------------~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~   50 (70)
T PF14259_consen    1 VYISNLPPSTT-----EEDLRNFFS-------------------------RFGPVEKVRLIKNKDGQSRGFAFVEFSSEE   50 (70)
T ss_dssp             EEEESSTTT-------HHHHHHHCT-------------------------TSSBEEEEEEEESTTSSEEEEEEEEESSHH
T ss_pred             CEEeCCCCCCC-----HHHHHHHHH-------------------------hcCCcceEEEEeeeccccCCEEEEEeCCHH
Confidence            68999998532     245667777                         4455556666665     478999999999


Q ss_pred             HHHHHHHHhcCCccCCcceE
Q psy258          116 AAAKARINLHQSVFASSKIN  135 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lr  135 (238)
                      .|.+|...+++..|.|+.++
T Consensus        51 ~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen   51 DAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             HHHHHHHHHTTEEETTEEEE
T ss_pred             HHHHHHHHCCCcEECCEEcC
Confidence            99999999998888887653

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG0125|consensus

Probab=97.63  E-value=0.00033  Score=65.86  Aligned_cols=79  Identities=29%  Similarity=0.380  Sum_probs=61.8

Q ss_pred             CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--CCCCeEEEEeC
Q psy258           35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--KSFRRMRVNYE  112 (238)
Q Consensus        35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--kSF~RiiVVF~  112 (238)
                      .|-|+-|+|.|+|=+ |.+++|+    +.|.+|||||                       -|+++.=  -|.|==+|.|+
T Consensus        93 ~~~pkRLhVSNIPFr-FRdpDL~----aMF~kfG~Vl-----------------------dVEIIfNERGSKGFGFVTme  144 (376)
T KOG0125|consen   93 KDTPKRLHVSNIPFR-FRDPDLR----AMFEKFGKVL-----------------------DVEIIFNERGSKGFGFVTME  144 (376)
T ss_pred             CCCCceeEeecCCcc-ccCccHH----HHHHhhCcee-----------------------eEEEEeccCCCCccceEEec
Confidence            578999999999854 6667776    5677888887                       3444331  23334499999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++++|.+||.+|||+.+.|.++.|.-|-.
T Consensus       145 n~~dadRARa~LHgt~VEGRkIEVn~ATa  173 (376)
T KOG0125|consen  145 NPADADRARAELHGTVVEGRKIEVNNATA  173 (376)
T ss_pred             ChhhHHHHHHHhhcceeeceEEEEeccch
Confidence            99999999999999999999998888744

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.63  E-value=0.0002  Score=67.76  Aligned_cols=74  Identities=18%  Similarity=0.218  Sum_probs=58.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+..+      ++-|-++|.|
T Consensus       186 ~~~l~v~nl~~~~te-----~~l~~~f~~~G~-------------------------i~~v~~~~d~~~g~~~g~afV~f  235 (457)
T TIGR01622       186 FLKLYVGNLHFNITE-----QELRQIFEPFGD-------------------------IEDVQLHRDPETGRSKGFGFIQF  235 (457)
T ss_pred             CCEEEEcCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEEcCCCCccceEEEEEE
Confidence            369999999976544     345677886655                         4444444      3446699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.+.|..|+..|++..+.|+.|+|.|++.
T Consensus       236 ~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~  265 (457)
T TIGR01622       236 HDAEEAKEALEVMNGFELAGRPIKVGYAQD  265 (457)
T ss_pred             CCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence            999999999999999999999999999764

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.62  E-value=0.0002  Score=70.12  Aligned_cols=72  Identities=24%  Similarity=0.370  Sum_probs=58.9

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~~  113 (238)
                      ||||.||+..+-+     +.|+++|++|                         |++.++..+      ++.|=++|.|.+
T Consensus         2 sl~VgnLp~~vte-----~~L~~~F~~~-------------------------G~v~~v~v~~d~~t~~s~G~afV~F~~   51 (562)
T TIGR01628         2 SLYVGDLDPDVTE-----AKLYDLFKPF-------------------------GPVLSVRVCRDSVTRRSLGYGYVNFQN   51 (562)
T ss_pred             eEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEEecCCCCCcceEEEEEECC
Confidence            8999999987754     3566788855                         555555554      456679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|.+|...+++..++|+.++|.|++.
T Consensus        52 ~~~A~~Al~~ln~~~i~gk~i~i~~s~~   79 (562)
T TIGR01628        52 PADAERALETMNFKRLGGKPIRIMWSQR   79 (562)
T ss_pred             HHHHHHHHHHhCCCEECCeeEEeecccc
Confidence            9999999999999999999999999865

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.53  E-value=0.00033  Score=67.08  Aligned_cols=74  Identities=26%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      +++|||.||+..+-.     +.|+.+|++||.                         +..+..++      +.|-++|.|
T Consensus       295 ~~~l~v~nlp~~~~~-----~~l~~~f~~~G~-------------------------i~~~~~~~~~~~g~~~g~afv~f  344 (509)
T TIGR01642       295 KDRIYIGNLPLYLGE-----DQIKELLESFGD-------------------------LKAFNLIKDIATGLSKGYAFCEY  344 (509)
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEecCCCCCcCeEEEEEE
Confidence            569999999976544     355677775554                         44444433      557799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|..|...|++..++|..|+|.++..
T Consensus       345 ~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~  374 (509)
T TIGR01642       345 KDPSVTDVAIAALNGKDTGDNKLHVQRACV  374 (509)
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence            999999999999999999999999999854

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.53  E-value=0.00034  Score=68.42  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=59.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      .++|||.||+..+-.     +.|+.+|++||+                         +.++..++     +.|-++|.|.
T Consensus       285 ~~~l~V~nl~~~~~~-----~~L~~~F~~~G~-------------------------i~~~~i~~d~~g~~~g~gfV~f~  334 (562)
T TIGR01628       285 GVNLYVKNLDDTVTD-----EKLRELFSECGE-------------------------ITSAKVMLDEKGVSRGFGFVCFS  334 (562)
T ss_pred             CCEEEEeCCCCccCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCcCCeEEEEeC
Confidence            358999999986543     456678886655                         54554443     4467999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..|.|++++|.+|+.
T Consensus       335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~  363 (562)
T TIGR01628       335 NPEEANRAVTEMHGRMLGGKPLYVALAQR  363 (562)
T ss_pred             CHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence            99999999999999999999999999876

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=97.53  E-value=0.00029  Score=70.61  Aligned_cols=72  Identities=29%  Similarity=0.391  Sum_probs=57.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhc--CCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQF--GKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      ++|||.||+..+-+     +.|+.+|++|  |+                         +..+..++.  -++|.|.+.++
T Consensus       234 k~LfVgNL~~~~te-----e~L~~~F~~f~~G~-------------------------I~rV~~~rg--fAFVeF~s~e~  281 (578)
T TIGR01648       234 KILYVRNLMTTTTE-----EIIEKSFSEFKPGK-------------------------VERVKKIRD--YAFVHFEDRED  281 (578)
T ss_pred             cEEEEeCCCCCCCH-----HHHHHHHHhcCCCc-------------------------eEEEEeecC--eEEEEeCCHHH
Confidence            58999999976543     4566778866  55                         444444444  58999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      |.+|+..|++..|.|+.|+|.||++.
T Consensus       282 A~kAi~~lnG~~i~Gr~I~V~~Akp~  307 (578)
T TIGR01648       282 AVKAMDELNGKELEGSEIEVTLAKPV  307 (578)
T ss_pred             HHHHHHHhCCCEECCEEEEEEEccCC
Confidence            99999999999999999999999874

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.52  E-value=0.0004  Score=66.57  Aligned_cols=80  Identities=21%  Similarity=0.318  Sum_probs=58.0

Q ss_pred             CCC-cEEEecCC--CCCCCCh---HHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---------
Q psy258           37 LPK-SLIITNLN--PDLFKDD---ALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---------  101 (238)
Q Consensus        37 ~p~-TLiitnL~--~~vf~~~---~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---------  101 (238)
                      .|+ +|+++|+.  ++++.+.   .+.+.|+.+|+                         .||.+..+...         
T Consensus       407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-------------------------~~G~v~~v~i~~~~~~~~~~  461 (509)
T TIGR01642       407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-------------------------KYGPLINIVIPRPNGDRNST  461 (509)
T ss_pred             CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-------------------------hcCCeeEEEeeccCcCCCcC
Confidence            344 78999985  2333322   23445555555                         55556655544         


Q ss_pred             CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          102 KSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       102 kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +++|.++|.|.+.+.|..|...|+|..|+|+.+.+.|...
T Consensus       462 ~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~  501 (509)
T TIGR01642       462 PGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE  501 (509)
T ss_pred             CCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence            3468899999999999999999999999999999999654

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.50  E-value=0.00039  Score=67.47  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=59.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      .+|+|.||+..+-+     +.|+++|++|                         |.+..+..+++.+.++|-|.+.++|.
T Consensus         3 ~vv~V~nLp~~~te-----~~L~~~f~~f-------------------------G~V~~v~i~~~k~~afVef~~~e~A~   52 (481)
T TIGR01649         3 PVVHVRNLPQDVVE-----ADLVEALIPF-------------------------GPVSYVMMLPGKRQALVEFEDEESAK   52 (481)
T ss_pred             cEEEEcCCCCCCCH-----HHHHHHHHhc-------------------------CCeeEEEEECCCCEEEEEeCchHHHH
Confidence            58999999987655     3566778855                         55667777788899999999999999


Q ss_pred             HHHHHh--cCCccCCcceEEEEeCC
Q psy258          119 KARINL--HQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L--~~~~f~g~~lrIyFAq~  141 (238)
                      +|...+  .+..+.|..++|.|++.
T Consensus        53 ~Ai~~~~~~~~~l~g~~l~v~~s~~   77 (481)
T TIGR01649        53 ACVNFATSVPIYIRGQPAFFNYSTS   77 (481)
T ss_pred             HHHHHhhcCCceEcCeEEEEEecCC
Confidence            999875  45678999999999875

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>smart00360 RRM RNA recognition motif

Probab=97.45  E-value=0.00069  Score=45.36  Aligned_cols=46  Identities=26%  Similarity=0.312  Sum_probs=35.9

Q ss_pred             hcCCceEEEecCC------CCeEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q psy258           91 QFGKPKSFQYLKS------FRRMRVNYESSAAAAKARINLHQSVFASSKINV  136 (238)
Q Consensus        91 ~~~~iv~fv~LkS------F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrI  136 (238)
                      .||++..+...+.      .+.++|.|.+.+.|.+|+..+++..+.|+.++|
T Consensus        19 ~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v   70 (71)
T smart00360       19 KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV   70 (71)
T ss_pred             hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence            4455555544443      468999999999999999999998888877765

>PLN03120 nucleic acid binding protein; Provisional

Probab=97.38  E-value=0.00089  Score=61.19  Aligned_cols=73  Identities=11%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~  114 (238)
                      -+|+||+||+..+=+     +.|+++|++||+|.                         .+...+   +-|-++|.|.+.
T Consensus         4 ~rtVfVgNLs~~tTE-----~dLrefFS~~G~I~-------------------------~V~I~~d~~~~GfAFVtF~d~   53 (260)
T PLN03120          4 VRTVKVSNVSLKATE-----RDIKEFFSFSGDIE-------------------------YVEMQSENERSQIAYVTFKDP   53 (260)
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCCeE-------------------------EEEEeecCCCCCEEEEEeCcH
Confidence            369999999986444     45678888776653                         333322   346799999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|..|.. |++..+.|+.++|..+..
T Consensus        54 eaAe~All-LnG~~l~gr~V~Vt~a~~   79 (260)
T PLN03120         54 QGAETALL-LSGATIVDQSVTITPAED   79 (260)
T ss_pred             HHHHHHHH-hcCCeeCCceEEEEeccC
Confidence            99999995 999999999999998765

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.33  E-value=0.00098  Score=62.77  Aligned_cols=74  Identities=18%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      .++|+|.||+..+-+     +.|+.+|++|                         +.+..+..++.      .+-++|.|
T Consensus       193 ~~~lfV~nLp~~vte-----e~L~~~F~~f-------------------------G~V~~v~i~~d~~tg~~kG~aFV~F  242 (346)
T TIGR01659       193 DTNLYVTNLPRTITD-----DQLDTIFGKY-------------------------GQIVQKNILRDKLTGTPRGVAFVRF  242 (346)
T ss_pred             cceeEEeCCCCcccH-----HHHHHHHHhc-------------------------CCEEEEEEeecCCCCccceEEEEEE
Confidence            358999999986544     3566778855                         55555554433      25699999


Q ss_pred             CCHHHHHHHHHHhcCCccCC--cceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFAS--SKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g--~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..+.+  .+++|-+++.
T Consensus       243 ~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~  274 (346)
T TIGR01659       243 NKREEAQEAISALNNVIPEGGSQPLTVRLAEE  274 (346)
T ss_pred             CCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence            99999999999999987765  5789999876

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0109|consensus

Probab=97.30  E-value=0.00044  Score=64.28  Aligned_cols=53  Identities=15%  Similarity=0.345  Sum_probs=47.4

Q ss_pred             HHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258           85 IETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus        85 ~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .++.|+.||++++.-.-|..  ++|-|+..+.|..|++.|++..|.|++|+|+.+
T Consensus        95 lRa~fe~ygpviecdivkdy--~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s  147 (346)
T KOG0109|consen   95 LRAKFEKYGPVIECDIVKDY--AFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS  147 (346)
T ss_pred             HhhhhcccCCceeeeeecce--eEEEEeeccchHHHHhcccccccccceeeeeee
Confidence            66777799999999888876  578889999999999999999999999999986

>smart00361 RRM_1 RNA recognition motif

Probab=97.15  E-value=0.0021  Score=46.40  Aligned_cols=54  Identities=19%  Similarity=0.357  Sum_probs=40.1

Q ss_pred             HHHHHhhhhcCCceEEE--ecC-------CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q psy258           83 EQIETLLSQFGKPKSFQ--YLK-------SFRRMRVNYESSAAAAKARINLHQSVFASSKINV  136 (238)
Q Consensus        83 ~~~~~~~~~~~~iv~fv--~Lk-------SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrI  136 (238)
                      +.|++..+.||.+..+.  .+.       +.|.++|.|.+.++|..|...|++..+.|+.+++
T Consensus         7 ~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~   69 (70)
T smart00361        7 REFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA   69 (70)
T ss_pred             HHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence            33444444666666552  332       4578999999999999999999999999877764

>KOG0148|consensus

Probab=97.10  E-value=0.0015  Score=60.23  Aligned_cols=102  Identities=18%  Similarity=0.266  Sum_probs=76.8

Q ss_pred             CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCc-------------------------------chhhhhhhHHHH
Q psy258           35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPK-------------------------------SFQYLKNDALKE   83 (238)
Q Consensus        35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~-------------------------------~~~~~~~~~~~~   83 (238)
                      ++-|.||||-||+..|-+     +-|-.||+|-|-+.                               .|-+.+-.-=.+
T Consensus         3 ~~~prtlyvgnld~~vte-----~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e   77 (321)
T KOG0148|consen    3 SDEPRTLYVGNLDSTVTE-----DFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNE   77 (321)
T ss_pred             CCCCceEEeeccChhhHH-----HHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchH
Confidence            466999999999886654     34567999998741                               111111122234


Q ss_pred             HHHHhhhhcCCceEEEecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258           84 QIETLLSQFGKPKSFQYLK------SFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus        84 ~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+++.|..||++.+-...|      |.|=-+|+|.+.++|.+|.+.|.+..++++.+|-.+|-.
T Consensus        78 ~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR  141 (321)
T KOG0148|consen   78 KLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR  141 (321)
T ss_pred             HHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence            4677777999998777665      668899999999999999999999988888899888755

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=97.08  E-value=0.0031  Score=49.09  Aligned_cols=72  Identities=19%  Similarity=0.251  Sum_probs=46.2

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcC-CceEEEecCCCCeEEEEeCCHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFG-KPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      +.|+|.|||... ....++..|+.|+.                         ..| .+++++    =+.++|-|.+.+.|
T Consensus         3 s~L~V~NLP~~~-d~~~I~~RL~qLsd-------------------------NCGGkVl~v~----~~tAilrF~~~~~A   52 (90)
T PF11608_consen    3 SLLYVSNLPTNK-DPSSIKNRLRQLSD-------------------------NCGGKVLSVS----GGTAILRFPNQEFA   52 (90)
T ss_dssp             EEEEEES--TTS--HHHHHHHHHHHHH-------------------------TTT--EEE------TT-EEEEESSHHHH
T ss_pred             cEEEEecCCCCC-CHHHHHHHHHHHhh-------------------------ccCCEEEEEe----CCEEEEEeCCHHHH
Confidence            468999998632 12335656666655                         443 444443    48999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeC
Q psy258          118 AKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .+|..-|++.+.+|+.+.+.|..
T Consensus        53 ~RA~KRmegEdVfG~kI~v~~~~   75 (90)
T PF11608_consen   53 ERAQKRMEGEDVFGNKISVSFSP   75 (90)
T ss_dssp             HHHHHHHTT--SSSS--EEESS-
T ss_pred             HHHHHhhcccccccceEEEEEcC
Confidence            99999999999999999999974

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=97.07  E-value=0.0009  Score=67.56  Aligned_cols=75  Identities=20%  Similarity=0.188  Sum_probs=58.6

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe------cCCCCeEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY------LKSFRRMRV  109 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~------LkSF~RiiV  109 (238)
                      ....+|||.||+..+-+     +.|+.+|++||.|                         .++..      -++.|=++|
T Consensus       105 ~~~~rLfVGnLp~~~tE-----e~Lr~lF~~fG~I-------------------------~sV~I~~D~~TgkskGfAFV  154 (612)
T TIGR01645       105 AIMCRVYVGSISFELRE-----DTIRRAFDPFGPI-------------------------KSINMSWDPATGKHKGFAFV  154 (612)
T ss_pred             cCCCEEEEcCCCCCCCH-----HHHHHHHHccCCE-------------------------EEEEEeecCCCCCcCCeEEE
Confidence            34569999999886655     3566788866554                         44333      356778999


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .|.+.++|.+|+..|++..+.|+.++|.+..
T Consensus       155 eF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~  185 (612)
T TIGR01645       155 EYEVPEAAQLALEQMNGQMLGGRNIKVGRPS  185 (612)
T ss_pred             EeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence            9999999999999999999999999987654

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0122|consensus

Probab=97.04  E-value=0.0024  Score=58.08  Aligned_cols=74  Identities=26%  Similarity=0.341  Sum_probs=58.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      -+|+-||||+++.=+ ++    |+.||+.|                         |++.....-+      +.|=++|.|
T Consensus       189 ~~tvRvtNLsed~~E-~d----L~eLf~~f-------------------------g~i~rvylardK~TG~~kGFAFVtF  238 (270)
T KOG0122|consen  189 EATVRVTNLSEDMRE-DD----LEELFRPF-------------------------GPITRVYLARDKETGLSKGFAFVTF  238 (270)
T ss_pred             cceeEEecCccccCh-hH----HHHHhhcc-------------------------CccceeEEEEccccCcccceEEEEE
Confidence            479999999986555 33    47888855                         4444333322      446799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|++|...|+|.-+....|+|-++++
T Consensus       239 ~sRddA~rAI~~LnG~gyd~LILrvEwskP  268 (270)
T KOG0122|consen  239 ESRDDAARAIADLNGYGYDNLILRVEWSKP  268 (270)
T ss_pred             ecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence            999999999999999988878899999987

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=96.97  E-value=0.005  Score=62.28  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=57.7

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      .++|||.||+..+-.     +.|+.+|++||+                         +......+      +-|=.+|.|
T Consensus       204 ~~rLfVgnLp~~vte-----edLk~lFs~FG~-------------------------I~svrl~~D~~tgksKGfGFVeF  253 (612)
T TIGR01645       204 FNRIYVASVHPDLSE-----TDIKSVFEAFGE-------------------------IVKCQLARAPTGRGHKGYGFIEY  253 (612)
T ss_pred             cceEEeecCCCCCCH-----HHHHHHHhhcCC-------------------------eeEEEEEecCCCCCcCCeEEEEE
Confidence            469999999976544     345678886655                         44443332      345699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|..|...|+++.++|+.|+|.++.+
T Consensus       254 e~~e~A~kAI~amNg~elgGr~LrV~kAi~  283 (612)
T TIGR01645       254 NNLQSQSEAIASMNLFDLGGQYLRVGKCVT  283 (612)
T ss_pred             CCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence            999999999999999999999999998764

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=96.82  E-value=0.0043  Score=58.79  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=47.3

Q ss_pred             HHHHhhhhcCCceEEEec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258           84 QIETLLSQFGKPKSFQYL--KSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus        84 ~~~~~~~~~~~iv~fv~L--kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+++.+++||.++.+...  .+-|.++|-|.+.++|.+|+..|+|-.|.|..+.+.|...
T Consensus       388 dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~  447 (457)
T TIGR01622       388 DVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN  447 (457)
T ss_pred             HHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence            444455567777766665  3458999999999999999999999999999999999754

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>PLN03121 nucleic acid binding protein; Provisional

Probab=96.66  E-value=0.0058  Score=55.43  Aligned_cols=70  Identities=16%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC---CCeEEEEeCCHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS---FRRMRVNYESSA  115 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS---F~RiiVVF~~~e  115 (238)
                      .|++|+||+.+.=+     +.|+.+|++||+|                         ..+...+.   -+=++|.|.+.+
T Consensus         6 ~TV~V~NLS~~tTE-----~dLrefFS~~G~I-------------------------~~V~I~~D~et~gfAfVtF~d~~   55 (243)
T PLN03121          6 YTAEVTNLSPKATE-----KDVYDFFSHCGAI-------------------------EHVEIIRSGEYACTAYVTFKDAY   55 (243)
T ss_pred             eEEEEecCCCCCCH-----HHHHHHHHhcCCe-------------------------EEEEEecCCCcceEEEEEECCHH
Confidence            59999999986544     4677889977664                         34433332   245999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEe
Q psy258          116 AAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      +|..|. .|+|..|.+.++.|.-.
T Consensus        56 aaetAl-lLnGa~l~d~~I~It~~   78 (243)
T PLN03121         56 ALETAV-LLSGATIVDQRVCITRW   78 (243)
T ss_pred             HHHHHH-hcCCCeeCCceEEEEeC
Confidence            998888 79999899887776553

>KOG0107|consensus

Probab=96.58  E-value=0.01  Score=51.86  Aligned_cols=76  Identities=18%  Similarity=0.187  Sum_probs=62.9

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCce-EEEecCCCCeEEEEeCCH
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK-SFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv-~fv~LkSF~RiiVVF~~~  114 (238)
                      ++-+-+||-||....     -|.+||.+|+.||                         ++- -|++-.--+=++|-|++.
T Consensus         8 ~~~~kVYVGnL~~~a-----~k~eLE~~F~~yG-------------------------~lrsvWvArnPPGfAFVEFed~   57 (195)
T KOG0107|consen    8 NGNTKVYVGNLGSRA-----TKRELERAFSKYG-------------------------PLRSVWVARNPPGFAFVEFEDP   57 (195)
T ss_pred             CCCceEEeccCCCCc-----chHHHHHHHHhcC-------------------------cceeEEEeecCCCceEEeccCc
Confidence            455789999999754     4567889999554                         444 577777778899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|..|...|++..|.|..++|-++.-
T Consensus        58 RDA~DAvr~LDG~~~cG~r~rVE~S~G   84 (195)
T KOG0107|consen   58 RDAEDAVRYLDGKDICGSRIRVELSTG   84 (195)
T ss_pred             ccHHHHHhhcCCccccCceEEEEeecC
Confidence            999999999999999999999988754

>KOG1190|consensus

Probab=96.53  E-value=0.01  Score=57.58  Aligned_cols=74  Identities=18%  Similarity=0.250  Sum_probs=62.8

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC-eEEEEeCCHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR-RMRVNYESSAAA  117 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~-RiiVVF~~~eaA  117 (238)
                      ..|.++||++..-..    +.|-.||+                         .||++..+..|.+-+ .++|-+.+..-|
T Consensus       298 ~vllvsnln~~~VT~----d~LftlFg-------------------------vYGdVqRVkil~nkkd~ALIQmsd~~qA  348 (492)
T KOG1190|consen  298 VVLLVSNLNEEAVTP----DVLFTLFG-------------------------VYGDVQRVKILYNKKDNALIQMSDGQQA  348 (492)
T ss_pred             eEEEEecCchhccch----hHHHHHHh-------------------------hhcceEEEEeeecCCcceeeeecchhHH
Confidence            589999999865553    34567777                         677888888877664 899999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.|+..|+|.-|+|+.+||.|++.
T Consensus       349 qLA~~hL~g~~l~gk~lrvt~SKH  372 (492)
T KOG1190|consen  349 QLAMEHLEGHKLYGKKLRVTLSKH  372 (492)
T ss_pred             HHHHHHhhcceecCceEEEeeccC
Confidence            999999999999999999999987

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=96.47  E-value=0.014  Score=46.06  Aligned_cols=74  Identities=15%  Similarity=0.249  Sum_probs=59.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEEEEe
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMRVNY  111 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~RiiVVF  111 (238)
                      +||-|.|+|.+.=+ ..|++.|.+.|.                            .-..|.||+       ++|=++|.|
T Consensus         2 TTvMirNIPn~~t~-~~L~~~l~~~~~----------------------------g~yDF~YLPiDf~~~~N~GYAFVNf   52 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQ-EMLIQILDEHFK----------------------------GKYDFFYLPIDFKNKCNLGYAFVNF   52 (97)
T ss_pred             eeEEEecCCCCCCH-HHHHHHHHHhcc----------------------------CcceEEEeeeeccCCCceEEEEEEc
Confidence            69999999987655 678877777543                            345666666       678899999


Q ss_pred             CCHHHHHHHHHHhcCCccC----CcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFA----SSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~----g~~lrIyFAq~  141 (238)
                      .+++.|..-.+..+|..|.    .+.+.|.||.-
T Consensus        53 ~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAri   86 (97)
T PF04059_consen   53 TSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARI   86 (97)
T ss_pred             CCHHHHHHHHHHHcCCccccCCCCcEEEEehhHh
Confidence            9999999999999998775    36789999865

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG0117|consensus

Probab=96.40  E-value=0.012  Score=57.44  Aligned_cols=74  Identities=23%  Similarity=0.329  Sum_probs=60.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      ..|||.||...+-+     +.|+.+|.+||++                         -.++-+|-  =++|-|.+.++|.
T Consensus       260 KvLYVRNL~~~tTe-----E~lk~~F~~~G~v-------------------------eRVkk~rD--YaFVHf~eR~dav  307 (506)
T KOG0117|consen  260 KVLYVRNLMESTTE-----ETLKKLFNEFGKV-------------------------ERVKKPRD--YAFVHFAEREDAV  307 (506)
T ss_pred             eeeeeeccchhhhH-----HHHHHHHHhccce-------------------------EEeecccc--eeEEeecchHHHH
Confidence            59999999985544     5677888877664                         34444444  4899999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCCCCC
Q psy258          119 KARINLHQSVFASSKINVYFVQPMTP  144 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~~t~  144 (238)
                      +|+..|.+..+.|..|.|.+||++..
T Consensus       308 kAm~~~ngkeldG~~iEvtLAKP~~k  333 (506)
T KOG0117|consen  308 KAMKETNGKELDGSPIEVTLAKPVDK  333 (506)
T ss_pred             HHHHHhcCceecCceEEEEecCChhh
Confidence            99999999999999999999998543

>KOG1457|consensus

Probab=96.34  E-value=0.014  Score=52.96  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=58.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC--C------eEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF--R------RMRV  109 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF--~------RiiV  109 (238)
                      -.||+|.-||.+|+-     ++|+.|||.|-.+                          +-..||.=  +      =+++
T Consensus        34 VRTLFVSGLP~DvKp-----REiynLFR~f~GY--------------------------EgslLK~Tsk~~~~~~pvaFa   82 (284)
T KOG1457|consen   34 VRTLFVSGLPNDVKP-----REIYNLFRRFHGY--------------------------EGSLLKYTSKGDQVCKPVAFA   82 (284)
T ss_pred             cceeeeccCCcccCH-----HHHHHHhccCCCc--------------------------cceeeeeccCCCccccceEEE
Confidence            369999999997765     5899999977332                          22223322  1      2689


Q ss_pred             EeCCHHHHHHHHHHhcCCccC---CcceEEEEeCCCCCC
Q psy258          110 NYESSAAAAKARINLHQSVFA---SSKINVYFVQPMTPF  145 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~---g~~lrIyFAq~~t~~  145 (238)
                      +|.+.+.|..||..|+|..|-   +..++|-+|++.+..
T Consensus        83 tF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~  121 (284)
T KOG1457|consen   83 TFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKR  121 (284)
T ss_pred             EecchHHHHHHHHHhcCeeeccccCceeEeeehhcCccc
Confidence            999999999999999997664   467999999985543

>KOG0110|consensus

Probab=96.32  E-value=0.016  Score=59.15  Aligned_cols=86  Identities=23%  Similarity=0.279  Sum_probs=62.1

Q ss_pred             CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      .+-+++||++|||=   .  .-++.++.+|+.+|+|++.+              |+.--+...  -..|+|=.+|-|.+.
T Consensus       512 ~~~~t~lfvkNlnf---~--Tt~e~l~~~F~k~G~VlS~~--------------I~kkkd~~~--k~lSmGfgFVEF~~~  570 (725)
T KOG0110|consen  512 EETETKLFVKNLNF---D--TTLEDLEDLFSKQGTVLSIE--------------ISKKKDPAN--KYLSMGFGFVEFAKP  570 (725)
T ss_pred             cccchhhhhhcCCc---c--cchhHHHHHHHhcCeEEEEE--------------Eeccccccc--cccccceeEEEecCH
Confidence            34455699999983   2  34558889999777765111              001111111  344778899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.|++|.+.|+|+.+-|..+.|.|+..
T Consensus       571 e~A~~a~k~lqgtvldGH~l~lk~S~~  597 (725)
T KOG0110|consen  571 ESAQAALKALQGTVLDGHKLELKISEN  597 (725)
T ss_pred             HHHHHHHHHhcCceecCceEEEEeccC
Confidence            999999999999999999999999873

>KOG1190|consensus

Probab=96.31  E-value=0.0045  Score=59.91  Aligned_cols=82  Identities=20%  Similarity=0.317  Sum_probs=61.2

Q ss_pred             CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      ++=|+++..|=+.. .|- +--.+-|..+|+.||+++                      .+++|.-=-.| |++|-|.+.
T Consensus       144 ~~~~n~vLr~iie~-m~y-pVslDVLHqvFS~fG~Vl----------------------KIiTF~Knn~F-QALvQy~d~  198 (492)
T KOG1190|consen  144 EDGPNPVLRTIIEN-MFY-PVSLDVLHQVFSKFGFVL----------------------KIITFTKNNGF-QALVQYTDA  198 (492)
T ss_pred             cCCCceeEEEEecc-cee-eeEHHHHHHHHhhcceeE----------------------EEEEEecccch-hhhhhccch
Confidence            45577777666643 344 344668999999999987                      56666544444 588999999


Q ss_pred             HHHHHHHHHhcCCccCCc--ceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASS--KINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~--~lrIyFAq~  141 (238)
                      +.|+.||..|+|..++.-  .+||.|++-
T Consensus       199 ~sAq~AK~aLdGqnIyngcCtLrId~Skl  227 (492)
T KOG1190|consen  199 VSAQAAKLALDGQNIYNGCCTLRIDFSKL  227 (492)
T ss_pred             hhHHHHHHhccCCcccCceeEEEeehhhc
Confidence            999999999999877653  478888865

>KOG4660|consensus

Probab=96.25  E-value=0.0058  Score=60.66  Aligned_cols=80  Identities=14%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             cccCCCCCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe-cCCCCeE
Q psy258           30 DLINDEQLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY-LKSFRRM  107 (238)
Q Consensus        30 ~~~~~~~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~-LkSF~Ri  107 (238)
                      |.....+.++ ||.|+||+..|-.     +.|+.+|+.||.|.                         .+.- .-+-+.+
T Consensus        66 ~np~~~~~~~~~L~v~nl~~~Vsn-----~~L~~~f~~yGeir-------------------------~ir~t~~~~~~~  115 (549)
T KOG4660|consen   66 DNPSEKDMNQGTLVVFNLPRSVSN-----DTLLRIFGAYGEIR-------------------------EIRETPNKRGIV  115 (549)
T ss_pred             CCCCcccCccceEEEEecCCcCCH-----HHHHHHHHhhcchh-------------------------hhhcccccCceE
Confidence            4444456666 9999999998877     35567788666543                         3222 2234678


Q ss_pred             EEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          108 RVNYESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       108 iVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      +|-|.|+..|++|.+.|.+..+.++.+++..+
T Consensus       116 ~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~  147 (549)
T KOG4660|consen  116 FVEFYDVRDAERALKALNRREIAGKRIKRPGG  147 (549)
T ss_pred             EEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence            99999999999999999999999888874443

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=96.25  E-value=0.014  Score=58.74  Aligned_cols=72  Identities=14%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEe
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNY  111 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF  111 (238)
                      ...+|+|.||+..+.+ +    .|+.+|++|                         |.+.++..++     +.+=++|.|
T Consensus        57 ~~~~lFVgnLp~~~tE-d----~L~~~F~~~-------------------------G~I~~vrl~~D~sG~sRGfaFV~F  106 (578)
T TIGR01648        57 RGCEVFVGKIPRDLYE-D----ELVPLFEKA-------------------------GPIYELRLMMDFSGQNRGYAFVTF  106 (578)
T ss_pred             CCCEEEeCCCCCCCCH-H----HHHHHHHhh-------------------------CCEEEEEEEECCCCCccceEEEEe
Confidence            4579999999998877 3    445677755                         5566665543     445599999


Q ss_pred             CCHHHHHHHHHHhcCCccC-CcceEEEE
Q psy258          112 ESSAAAAKARINLHQSVFA-SSKINVYF  138 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~-g~~lrIyF  138 (238)
                      .+.++|.+|...|++..+. ++.+.+..
T Consensus       107 ~~~e~A~~Ai~~lng~~i~~Gr~l~V~~  134 (578)
T TIGR01648       107 CGKEEAKEAVKLLNNYEIRPGRLLGVCI  134 (578)
T ss_pred             CCHHHHHHHHHHcCCCeecCCccccccc
Confidence            9999999999999998764 44444443

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0130|consensus

Probab=96.20  E-value=0.012  Score=49.76  Aligned_cols=78  Identities=17%  Similarity=0.161  Sum_probs=56.4

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAK  119 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~  119 (238)
                      -|+||++++     +.--+.+.+.|+.||+|.                   ...-.+.-..-=.-|=++|-|++.+.|+.
T Consensus        74 Ii~VtgvHe-----EatEedi~d~F~dyGeiK-------------------NihLNLDRRtGy~KGYaLvEYet~keAq~  129 (170)
T KOG0130|consen   74 IIFVTGVHE-----EATEEDIHDKFADYGEIK-------------------NIHLNLDRRTGYVKGYALVEYETLKEAQA  129 (170)
T ss_pred             EEEEeccCc-----chhHHHHHHHHhhccccc-------------------ceeeccccccccccceeeeehHhHHHHHH
Confidence            689999998     345567889999999886                   11111111111122569999999999999


Q ss_pred             HHHHhcCCccCCcceEEEEeCC
Q psy258          120 ARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       120 Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |+..+.+..+.|..+.|-|+=.
T Consensus       130 A~~~~Ng~~ll~q~v~VDw~Fv  151 (170)
T KOG0130|consen  130 AIDALNGAELLGQNVSVDWCFV  151 (170)
T ss_pred             HHHhccchhhhCCceeEEEEEe
Confidence            9999999999998877766533

>KOG0105|consensus

Probab=96.11  E-value=0.01  Score=52.48  Aligned_cols=127  Identities=20%  Similarity=0.313  Sum_probs=86.0

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCe----EEEEeCCH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRR----MRVNYESS  114 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~R----iiVVF~~~  114 (238)
                      -++|+-|||.+|-++     .+++||.+|                         +.+. .+-||+-.+    ++|-|+++
T Consensus         7 ~~iyvGNLP~diRek-----eieDlFyKy-------------------------g~i~-~ieLK~r~g~ppfafVeFEd~   55 (241)
T KOG0105|consen    7 RRIYVGNLPGDIREK-----EIEDLFYKY-------------------------GRIR-EIELKNRPGPPPFAFVEFEDP   55 (241)
T ss_pred             ceEEecCCCcchhhc-----cHHHHHhhh-------------------------cceE-EEEeccCCCCCCeeEEEecCc
Confidence            489999999877662     577888855                         4443 356777765    99999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCCCCCCCC--------------CCCccCCCCCCcceeeCCCCCCCC-CCCC----
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQPMTPFDS--------------ADQHLQPPAPTKQFLISPPSSPPV-GWEP----  175 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~--------------~~~~L~~P~~~K~FLISPP~SPP~-gWe~----  175 (238)
                      .+|.-|.-.-++..+.+-.|||-|+..--+...              ....--+|.-...|-+=--+=||. -|..    
T Consensus        56 RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDH  135 (241)
T KOG0105|consen   56 RDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDH  135 (241)
T ss_pred             cchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHH
Confidence            999999999999999999999999754211100              122334666556665544444444 5873    


Q ss_pred             CCCCCC------------CC----cHHHHHHHHhcCC
Q psy258          176 RPESEP------------LV----NYDLLAAIASLTP  196 (238)
Q Consensus       176 ~~E~~P------------~~----~~DL~~ala~L~~  196 (238)
                      -.|.+-            ++    .+|+-.|+.+|..
T Consensus       136 mReaGdvCfadv~rDg~GvV~~~r~eDMkYAvr~ld~  172 (241)
T KOG0105|consen  136 MREAGDVCFADVQRDGVGVVEYLRKEDMKYAVRKLDD  172 (241)
T ss_pred             HHhhCCeeeeeeecccceeeeeeehhhHHHHHHhhcc
Confidence            123222            11    4889999999964

>PLN03213 repressor of silencing 3; Provisional

Probab=96.02  E-value=0.023  Score=56.52  Aligned_cols=75  Identities=12%  Similarity=0.182  Sum_probs=56.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH--HH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS--AA  116 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~--ea  116 (238)
                      .+|||-||...+=.     +.|+++|++||+|.                       -+.+.-=+..|=++|-|.+.  .+
T Consensus        11 MRIYVGNLSydVTE-----DDLravFSeFGsVk-----------------------dVEIpRETGRGFAFVEMssdddaE   62 (759)
T PLN03213         11 VRLHVGGLGESVGR-----DDLLKIFSPMGTVD-----------------------AVEFVRTKGRSFAYIDFSPSSTNS   62 (759)
T ss_pred             eEEEEeCCCCCCCH-----HHHHHHHHhcCCee-----------------------EEEEecccCCceEEEEecCCcHHH
Confidence            58999999987655     45668899888875                       22332111123378888876  67


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +..|...|++..|+|..|+|.=|++
T Consensus        63 eeKAISaLNGAEWKGR~LKVNKAKP   87 (759)
T PLN03213         63 LTKLFSTYNGCVWKGGRLRLEKAKE   87 (759)
T ss_pred             HHHHHHHhcCCeecCceeEEeeccH
Confidence            8999999999999999999998854

>KOG0415|consensus

Probab=96.01  E-value=0.0066  Score=58.05  Aligned_cols=83  Identities=22%  Similarity=0.380  Sum_probs=65.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      |-|+||.||+ |=.+    +-|+-+||.||+|.                   .-.-+-.|..--|++=++|-|++.++..
T Consensus       240 NVLFVCKLNP-VTtD----eDLeiIFSrFG~i~-------------------sceVIRD~ktgdsLqyaFiEFen~escE  295 (479)
T KOG0415|consen  240 NVLFVCKLNP-VTTD----EDLEIIFSRFGKIV-------------------SCEVIRDRKTGDSLQYAFIEFENKESCE  295 (479)
T ss_pred             ceEEEEecCC-cccc----cchhhHHhhcccce-------------------eeeEEecccccchhheeeeeecchhhHH
Confidence            5899999987 4443    34567899888765                   2223335555557778999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCCCCCC
Q psy258          119 KARINLHQSVFASSKINVYFVQPMTPF  145 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~~t~~  145 (238)
                      +|--.|++.-+-+..|.|-|+|+++.+
T Consensus       296 ~AyFKMdNvLIDDrRIHVDFSQSVsk~  322 (479)
T KOG0415|consen  296 QAYFKMDNVLIDDRRIHVDFSQSVSKV  322 (479)
T ss_pred             HHHhhhcceeeccceEEeehhhhhhhh
Confidence            999999999899999999999997763

>KOG0533|consensus

Probab=96.00  E-value=0.022  Score=51.65  Aligned_cols=76  Identities=14%  Similarity=0.312  Sum_probs=58.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe---cCCCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY---LKSFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~---LkSF~RiiVVF~~~  114 (238)
                      +++|+|+||+.-|-. +    .|+.||.+||.+.                       .+.+.|   =++.|.+-|+|...
T Consensus        83 ~~~v~v~NL~~~V~~-~----Dl~eLF~~~~~~~-----------------------r~~vhy~~~G~s~Gta~v~~~r~  134 (243)
T KOG0533|consen   83 STKVNVSNLPYGVID-A----DLKELFAEFGELK-----------------------RVAVHYDRAGRSLGTADVSFNRR  134 (243)
T ss_pred             cceeeeecCCcCcch-H----HHHHHHHHhccce-----------------------EEeeccCCCCCCCccceeeecch
Confidence            568999999987776 3    4446777776432                       222222   24668899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|..|.+.++++.+.|.+|++.-..+
T Consensus       135 ~DA~~avk~~~gv~ldG~~mk~~~i~~  161 (243)
T KOG0533|consen  135 DDAERAVKKYNGVALDGRPMKIEIISS  161 (243)
T ss_pred             HhHHHHHHHhcCcccCCceeeeEEecC
Confidence            999999999999999999988877655

>KOG0153|consensus

Probab=95.81  E-value=0.021  Score=54.27  Aligned_cols=73  Identities=23%  Similarity=0.380  Sum_probs=60.3

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      +||||-+|.+.+++     ..|++||-                         +||++-+++.+..-|=++|.|.+.++|+
T Consensus       229 ~tLyIg~l~d~v~e-----~dIrdhFy-------------------------qyGeirsi~~~~~~~CAFv~ftTR~aAE  278 (377)
T KOG0153|consen  229 KTLYIGGLNDEVLE-----QDIRDHFY-------------------------QYGEIRSIRILPRKGCAFVTFTTREAAE  278 (377)
T ss_pred             eEEEecccccchhH-----HHHHHHHh-------------------------hcCCeeeEEeecccccceeeehhhHHHH
Confidence            59999999986665     24667777                         5678888888888888999999999999


Q ss_pred             HHHHH-hcCCccCCcceEEEEeCC
Q psy258          119 KARIN-LHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~-L~~~~f~g~~lrIyFAq~  141 (238)
                      .|... .+...+.|.+++|.+|.+
T Consensus       279 ~Aae~~~n~lvI~G~Rl~i~Wg~~  302 (377)
T KOG0153|consen  279 KAAEKSFNKLVINGFRLKIKWGRP  302 (377)
T ss_pred             HHHHhhcceeeecceEEEEEeCCC
Confidence            98865 555678898999999877

>KOG4207|consensus

Probab=95.67  E-value=0.023  Score=50.99  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=54.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe------cCCCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY------LKSFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~------LkSF~RiiVVF~  112 (238)
                      ++|.|-||--.     .--+.|+.+|..||+|                         ..+-.      -.+-|=++|-|.
T Consensus        14 ~SLkVdNLTyR-----Tspd~LrrvFekYG~v-------------------------gDVyIPrdr~Tr~sRgFaFVrf~   63 (256)
T KOG4207|consen   14 TSLKVDNLTYR-----TSPDDLRRVFEKYGRV-------------------------GDVYIPRDRYTRQSRGFAFVRFH   63 (256)
T ss_pred             eeEEecceecc-----CCHHHHHHHHHHhCcc-------------------------cceecccccccccccceeEEEee
Confidence            68999998632     2234567888866654                         33221      124466999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +-.+|+.|+..|++..+.|..|+|++|+=
T Consensus        64 ~k~daedA~damDG~~ldgRelrVq~ary   92 (256)
T KOG4207|consen   64 DKRDAEDALDAMDGAVLDGRELRVQMARY   92 (256)
T ss_pred             ecchHHHHHHhhcceeeccceeeehhhhc
Confidence            99999999999999999999999999854

>KOG0132|consensus

Probab=95.53  E-value=0.044  Score=56.73  Aligned_cols=79  Identities=16%  Similarity=0.223  Sum_probs=66.5

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA  115 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e  115 (238)
                      -..+||.|-.|+..+.+ .+|+    ++|.                         .||++.++......|=++|+..+.+
T Consensus       419 V~SrTLwvG~i~k~v~e-~dL~----~~fe-------------------------efGeiqSi~li~~R~cAfI~M~~Rq  468 (894)
T KOG0132|consen  419 VCSRTLWVGGIPKNVTE-QDLA----NLFE-------------------------EFGEIQSIILIPPRGCAFIKMVRRQ  468 (894)
T ss_pred             EeeeeeeeccccchhhH-HHHH----HHHH-------------------------hcccceeEeeccCCceeEEEEeehh
Confidence            45569999999887777 4555    4444                         6789999999999999999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQPMTP  144 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~~t~  144 (238)
                      +|.+|.+.|.+..+.++.++|++|-...+
T Consensus       469 dA~kalqkl~n~kv~~k~Iki~Wa~g~G~  497 (894)
T KOG0132|consen  469 DAEKALQKLSNVKVADKTIKIAWAVGKGP  497 (894)
T ss_pred             HHHHHHHHHhcccccceeeEEeeeccCCc
Confidence            99999999999999999999999865443

>KOG0123|consensus

Probab=95.33  E-value=0.033  Score=53.14  Aligned_cols=70  Identities=27%  Similarity=0.344  Sum_probs=50.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      |..++|.||++.+-.     +.|++.|+.||+|+|=.=+..            .-|         +-+- +|.|++.++|
T Consensus        76 ~~~~~i~nl~~~~~~-----~~~~d~f~~~g~ilS~kv~~~------------~~g---------~kg~-FV~f~~e~~a  128 (369)
T KOG0123|consen   76 PSLVFIKNLDESIDN-----KSLYDTFSEFGNILSCKVATD------------ENG---------SKGY-FVQFESEESA  128 (369)
T ss_pred             CceeeecCCCcccCc-----HHHHHHHHhhcCeeEEEEEEc------------CCC---------ceee-EEEeCCHHHH
Confidence            455999999986544     467889998888762211110            001         4445 9999999999


Q ss_pred             HHHHHHhcCCccCCcce
Q psy258          118 AKARINLHQSVFASSKI  134 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~l  134 (238)
                      .+|...++|.-++|+.+
T Consensus       129 ~~ai~~~ng~ll~~kki  145 (369)
T KOG0123|consen  129 KKAIEKLNGMLLNGKKI  145 (369)
T ss_pred             HHHHHHhcCcccCCCee
Confidence            99999999988887654

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=95.20  E-value=0.073  Score=45.02  Aligned_cols=70  Identities=16%  Similarity=0.264  Sum_probs=51.1

Q ss_pred             cEEEecCC-----CCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           40 SLIITNLN-----PDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        40 TLiitnL~-----~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      |+++.=+.     ...|. ++|..+|-.-|++||++.                       ++.|+-    +.+||+|.+.
T Consensus        29 TVvVsv~~~~~~e~~~Fd-d~l~~~ll~~~~~~Gevv-----------------------LvRfv~----~~mwVTF~dg   80 (146)
T PF08952_consen   29 TVVVSVDSPSEDEDSSFD-DNLMDELLQKFAQYGEVV-----------------------LVRFVG----DTMWVTFRDG   80 (146)
T ss_dssp             EEEEEECS-SCCCCHS---HHHHHHHHHHHHCCS-EC-----------------------EEEEET----TCEEEEESSC
T ss_pred             eEEEEecCCCccccCcCC-HHHHHHHHHHHHhCCceE-----------------------EEEEeC----CeEEEEECcc
Confidence            77776665     35775 889989988888666543                       333332    6899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEE
Q psy258          115 AAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      ++|.+|. .+++..++|+.++|.-
T Consensus        81 ~sALaal-s~dg~~v~g~~l~i~L  103 (146)
T PF08952_consen   81 QSALAAL-SLDGIQVNGRTLKIRL  103 (146)
T ss_dssp             HHHHHHH-HGCCSEETTEEEEEEE
T ss_pred             HHHHHHH-ccCCcEECCEEEEEEe
Confidence            9998886 5788889998888876

; PDB: 1UFW_A 2DNR_A.

>KOG4212|consensus

Probab=94.93  E-value=0.06  Score=52.89  Aligned_cols=71  Identities=23%  Similarity=0.272  Sum_probs=55.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      .++||.|||-. |.   -| .|++-|+.||.++                    |.++  ...=++.+  +|-|.+.+.|.
T Consensus       537 ~qIiirNlP~d-fT---Wq-mlrDKfre~G~v~--------------------yadi--me~GkskG--VVrF~s~edAE  587 (608)
T KOG4212|consen  537 CQIIIRNLPFD-FT---WQ-MLRDKFREIGHVL--------------------YADI--MENGKSKG--VVRFFSPEDAE  587 (608)
T ss_pred             cEEEEecCCcc-cc---HH-HHHHHHHhcccee--------------------hhhh--hccCCccc--eEEecCHHHHH
Confidence            38999999854 43   22 5566677788876                    5555  44556666  89999999999


Q ss_pred             HHHHHhcCCccCCcceEEEE
Q psy258          119 KARINLHQSVFASSKINVYF  138 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      +|.+.|++..+.|..|+|.|
T Consensus       588 ra~a~Mngs~l~Gr~I~V~y  607 (608)
T KOG4212|consen  588 RACALMNGSRLDGRNIKVTY  607 (608)
T ss_pred             HHHHHhccCcccCceeeeee
Confidence            99999999999999999877

>KOG0111|consensus

Probab=94.73  E-value=0.049  Score=49.45  Aligned_cols=79  Identities=22%  Similarity=0.307  Sum_probs=63.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      +||||--|-++|=+     .-|.+-|=.||.|.                   -..-.+....-|-.+=.+|-|.-.++|.
T Consensus        11 rtlYVGGladeVte-----kvLhaAFIPFGDI~-------------------dIqiPlDyesqkHRgFgFVefe~aEDAa   66 (298)
T KOG0111|consen   11 RTLYVGGLADEVTE-----KVLHAAFIPFGDIK-------------------DIQIPLDYESQKHRGFGFVEFEEAEDAA   66 (298)
T ss_pred             eeEEeccchHHHHH-----HHHHhccccccchh-------------------hcccccchhcccccceeEEEeeccchhH
Confidence            59999999775432     35677788888875                   3344555556666677899999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|..-|++..++|+.+||.||++
T Consensus        67 aAiDNMnesEL~GrtirVN~AkP   89 (298)
T KOG0111|consen   67 AAIDNMNESELFGRTIRVNLAKP   89 (298)
T ss_pred             HHhhcCchhhhcceeEEEeecCC
Confidence            99999999999999999999988

>KOG0108|consensus

Probab=94.64  E-value=0.085  Score=51.59  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      .+++|.|++-++-+     ++|..+|++.|.|+                   .+.-+.+.-.=+.-|=.+|.|.+.+.|.
T Consensus        19 ~~v~vgnip~~~se-----~~l~~~~~~~g~v~-------------------s~~~v~D~~tG~~~G~~f~~~~~~~~~~   74 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSE-----EQLLSIFSGVGPVL-------------------SFRLVYDRETGKPKGFGFCEFTDEETAE   74 (435)
T ss_pred             cceEecCCCCcccH-----HHHHHHHhccCccc-------------------eeeecccccCCCcCceeeEecCchhhHH
Confidence            68999999865444     57778888777776                   4444455555556677999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|.+.|.+..|+|..+||-|+..
T Consensus        75 ~a~~~lNg~~~~gr~l~v~~~~~   97 (435)
T KOG0108|consen   75 RAIRNLNGAEFNGRKLRVNYASN   97 (435)
T ss_pred             HHHHhcCCcccCCceEEeecccc
Confidence            99999999999999999999865

>KOG0123|consensus

Probab=94.44  E-value=0.062  Score=51.24  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=37.8

Q ss_pred             CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          103 SFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       103 SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      |+|=+.|.|.+.+.|.+|+..+....+.|+++||-+++.+
T Consensus        36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd   75 (369)
T KOG0123|consen   36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD   75 (369)
T ss_pred             ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence            7899999999999999999999999999999999998873

>KOG0145|consensus

Probab=94.22  E-value=0.17  Score=47.03  Aligned_cols=77  Identities=22%  Similarity=0.320  Sum_probs=60.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEE------ecCCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQ------YLKSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv------~LkSF~RiiVVF  111 (238)
                      -+-|||+=||...     -++++++||++-|.                         +-+..      .-.|+|-=+|.|
T Consensus        41 kTNLIvNYLPQ~M-----TqdE~rSLF~SiGe-------------------------iEScKLvRDKitGqSLGYGFVNY   90 (360)
T KOG0145|consen   41 KTNLIVNYLPQNM-----TQDELRSLFGSIGE-------------------------IESCKLVRDKITGQSLGYGFVNY   90 (360)
T ss_pred             cceeeeeeccccc-----CHHHHHHHhhcccc-------------------------eeeeeeeeccccccccccceeee
Confidence            4578888888643     45678899995544                         44333      334778889999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPMTP  144 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~  144 (238)
                      -++++|.+|.-.|.|.-+..+.++|.||.+.+.
T Consensus        91 v~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~  123 (360)
T KOG0145|consen   91 VRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD  123 (360)
T ss_pred             cChHHHHHHHhhhcceeeccceEEEEeccCChh
Confidence            999999999999999999999999999998544

>KOG0110|consensus

Probab=94.19  E-value=0.084  Score=54.06  Aligned_cols=76  Identities=20%  Similarity=0.325  Sum_probs=62.2

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC----e--EEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR----R--MRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~----R--iiVVF~  112 (238)
                      +-|+|.||+   |+  .-++.++.||.                         +||.+.++...+.++    |  .+|-|-
T Consensus       614 tKIlVRNip---Fe--At~rEVr~LF~-------------------------aFGqlksvRlPKK~~k~a~rGF~Fv~f~  663 (725)
T KOG0110|consen  614 TKILVRNIP---FE--ATKREVRKLFT-------------------------AFGQLKSVRLPKKIGKGAHRGFGFVDFL  663 (725)
T ss_pred             ceeeeeccc---hH--HHHHHHHHHHh-------------------------cccceeeeccchhhcchhhccceeeecc
Confidence            478999997   44  44556777777                         777788888888753    2  799999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPMTP  144 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~  144 (238)
                      +.+.|.+|+..|..+.++|..+-+.||+..+.
T Consensus       664 t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~  695 (725)
T KOG0110|consen  664 TPREAKNAFDALGSTHLYGRRLVLEWAKSDNT  695 (725)
T ss_pred             CcHHHHHHHHhhcccceechhhheehhccchH
Confidence            99999999999999999999999999987443

>KOG1456|consensus

Probab=93.71  E-value=0.28  Score=47.49  Aligned_cols=106  Identities=19%  Similarity=0.297  Sum_probs=70.1

Q ss_pred             ccceeeeeccCCCCCCCCCCCcccccCCCCCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHH
Q psy258            7 DHKMIINAIDNLKDTGDMGDSLDDLINDEQLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQI   85 (238)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~   85 (238)
                      ++.|+|+.+.-|=|-.- ++.+.-+=+++.-|| -|.+|=||+-  - +=-.+-|+.+..                    
T Consensus        89 ~n~i~i~gq~Al~NySt-sq~i~R~g~es~~pN~VLl~TIlNp~--Y-pItvDVly~Icn--------------------  144 (494)
T KOG1456|consen   89 DNQIYIAGQQALFNYST-SQCIERPGDESATPNKVLLFTILNPQ--Y-PITVDVLYTICN--------------------  144 (494)
T ss_pred             cCcccccCchhhcccch-hhhhccCCCCCCCCCeEEEEEeecCc--c-ccchhhhhhhcC--------------------
Confidence            34556655444333221 122222323345566 7788888862  1 122345565544                    


Q ss_pred             HHhhhhcCCceEEEecCCCC-eEEEEeCCHHHHHHHHHHhcCCccCCc--ceEEEEeCC
Q psy258           86 ETLLSQFGKPKSFQYLKSFR-RMRVNYESSAAAAKARINLHQSVFASS--KINVYFVQP  141 (238)
Q Consensus        86 ~~~~~~~~~iv~fv~LkSF~-RiiVVF~~~eaA~~Ar~~L~~~~f~g~--~lrIyFAq~  141 (238)
                           ..|.+..++.+|+-+ |+.|-|++.++|++||..|.|.+++.-  .++|-||++
T Consensus       145 -----p~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP  198 (494)
T KOG1456|consen  145 -----PQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP  198 (494)
T ss_pred             -----CCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence                 557777888888775 999999999999999999999998763  578999987

>KOG0131|consensus

Probab=93.37  E-value=0.12  Score=45.53  Aligned_cols=72  Identities=18%  Similarity=0.121  Sum_probs=54.8

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      .||||+||++++-+     +.|..||-                         +-|+++.+..=|-      -|=.+|-|.
T Consensus        10 ~tiyvgnld~kvs~-----~~l~EL~i-------------------------qagpVv~i~iPkDrv~~~~qGygF~Ef~   59 (203)
T KOG0131|consen   10 ATLYVGNLDEKVSE-----ELLYELFI-------------------------QAGPVVNLHIPKDRVTQKHQGYGFAEFR   59 (203)
T ss_pred             ceEEEecCCHHHHH-----HHHHHHHH-------------------------hcCceeeeecchhhhcccccceeEEEEe
Confidence            69999999885443     45677777                         4456665544332      255899999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      +.++|.-|-..|....++|+++|+.-+.
T Consensus        60 ~eedadYAikiln~VkLYgrpIrv~kas   87 (203)
T KOG0131|consen   60 TEEDADYAIKILNMVKLYGRPIRVNKAS   87 (203)
T ss_pred             chhhhHHHHHHHHHHHhcCceeEEEecc
Confidence            9999999999999999999988776654

>KOG0151|consensus

Probab=93.34  E-value=0.41  Score=49.52  Aligned_cols=75  Identities=21%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-----C--e--EEE
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-----R--R--MRV  109 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-----~--R--iiV  109 (238)
                      +-||+-|||++|-+ +.|.    .-|.                         .||++++...+=-.     +  |  -+|
T Consensus       175 TNlyv~Nlnpsv~E-~~ll----~tfG-------------------------rfgPlasvKimwpRtEeEk~r~r~cgfv  224 (877)
T KOG0151|consen  175 TNLYVGNLNPSVDE-NFLL----RTFG-------------------------RFGPLASVKIMWPRTEEEKRRERNCGFV  224 (877)
T ss_pred             cceeeecCCccccH-HHHH----HHhc-------------------------ccCcccceeeecccchhhhcccccccee
Confidence            47999999998877 3333    2344                         56777776654222     1  2  789


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      .|-+..+|.+|+..|++...++..|++.||+.+.
T Consensus       225 afmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~  258 (877)
T KOG0151|consen  225 AFMNRADAERALKELQGIIVMEYEMKLGWGKAVP  258 (877)
T ss_pred             eehhhhhHHHHHHHhcceeeeeeeeeeccccccc
Confidence            9999999999999999999999999999998743

>KOG0144|consensus

Probab=92.98  E-value=0.24  Score=48.61  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=41.4

Q ss_pred             hhcCCceEEEecCCC------CeEEEEeCCHHHHHHHHHHhcCC-ccCC--cceEEEEeCC
Q psy258           90 SQFGKPKSFQYLKSF------RRMRVNYESSAAAAKARINLHQS-VFAS--SKINVYFVQP  141 (238)
Q Consensus        90 ~~~~~iv~fv~LkSF------~RiiVVF~~~eaA~~Ar~~L~~~-~f~g--~~lrIyFAq~  141 (238)
                      +.||.+.++..+|-.      |=++|.|.+.++|.+|...||+. .|.|  .++++-||..
T Consensus        56 e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~  116 (510)
T KOG0144|consen   56 EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADG  116 (510)
T ss_pred             HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccch
Confidence            366778888888844      56999999999999999999994 2433  5788888865

>KOG0131|consensus

Probab=92.85  E-value=0.34  Score=42.77  Aligned_cols=80  Identities=19%  Similarity=0.120  Sum_probs=57.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe-cCCCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY-LKSFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~-LkSF~RiiVVF~~~ea  116 (238)
                      ..-|+|-||...     -..+.|+.+||.||.++                   .--.+.-... -++-+=.+|+|.+-++
T Consensus        96 ganlfvgNLd~~-----vDe~~L~dtFsafG~l~-------------------~~P~i~rd~~tg~~~~~g~i~~~sfea  151 (203)
T KOG0131|consen   96 GANLFVGNLDPE-----VDEKLLYDTFSAFGVLI-------------------SPPKIMRDPDTGNPKGFGFINYASFEA  151 (203)
T ss_pred             cccccccccCcc-----hhHHHHHHHHHhccccc-------------------cCCcccccccCCCCCCCeEEechhHHH
Confidence            356889999762     23457899999888765                   2112222222 1223457999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|...+.+.-+...+++++|+..
T Consensus       152 sd~ai~s~ngq~l~nr~itv~ya~k  176 (203)
T KOG0131|consen  152 SDAAIGSMNGQYLCNRPITVSYAFK  176 (203)
T ss_pred             HHHHHHHhccchhcCCceEEEEEEe
Confidence            9999999999988888999999865

>KOG0127|consensus

Probab=92.78  E-value=0.27  Score=49.56  Aligned_cols=80  Identities=19%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCC-ceEEEecCCCCeEEEEeCCHH
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGK-PKSFQYLKSFRRMRVNYESSA  115 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~fv~LkSF~RiiVVF~~~e  115 (238)
                      .-.|++|.||+=+     .-.+.|..+|++||.+-                    |.- +..=..=.+.|+++|-|.+..
T Consensus       291 ~~~tVFvRNL~fD-----~tEEel~~~fskFG~v~--------------------ya~iV~~k~T~~skGtAFv~Fkt~~  345 (678)
T KOG0127|consen  291 EGKTVFVRNLPFD-----TTEEELKEHFSKFGEVK--------------------YAIIVKDKDTGHSKGTAFVKFKTQI  345 (678)
T ss_pred             ccceEEEecCCcc-----ccHHHHHHHHHhhccce--------------------eEEEEeccCCCCcccceEEEeccHH
Confidence            3459999999853     34567889999999864                    221 223334457899999999999


Q ss_pred             HHHHHHHHhc-----C-CccCCcceEEEEeCC
Q psy258          116 AAAKARINLH-----Q-SVFASSKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~-----~-~~f~g~~lrIyFAq~  141 (238)
                      +|+++.....     + +.+.|..++|.-|-.
T Consensus       346 ~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~  377 (678)
T KOG0127|consen  346 AAQNCIEAASPASEDGSVLLDGRLLKVTLAVT  377 (678)
T ss_pred             HHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence            9999988773     2 335566677777643

>KOG0147|consensus

Probab=92.71  E-value=0.36  Score=48.30  Aligned_cols=62  Identities=23%  Similarity=0.206  Sum_probs=55.5

Q ss_pred             hHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258           79 DALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus        79 ~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      +.|++.+.+-+++||.++++..=|.= |.+.|-|++.++|..|-..|||-.|.|+.|...|-.
T Consensus       464 ~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~  526 (549)
T KOG0147|consen  464 QEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP  526 (549)
T ss_pred             hHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence            67888888888999999998887755 999999999999999999999999999888888843

>KOG0127|consensus

Probab=92.49  E-value=0.49  Score=47.74  Aligned_cols=78  Identities=23%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             CCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-----CeEEE
Q psy258           36 QLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-----RRMRV  109 (238)
Q Consensus        36 ~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-----~RiiV  109 (238)
                      ++|. -|||.|||=++.. +.    |..+|++||+                         ++++..=+.+     |=++|
T Consensus       114 ~~~k~rLIIRNLPf~~k~-~d----Lk~vFs~~G~-------------------------V~Ei~IP~k~dgklcGFaFV  163 (678)
T KOG0127|consen  114 DLPKWRLIIRNLPFKCKK-PD----LKNVFSNFGK-------------------------VVEIVIPRKKDGKLCGFAFV  163 (678)
T ss_pred             cCccceEEeecCCcccCc-HH----HHHHHhhcce-------------------------EEEEEcccCCCCCccceEEE
Confidence            4454 8999999977777 34    4578997766                         4444443444     56899


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      -|-...+|..|+..+.+..+.|.++-+-||-.+.
T Consensus       164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd  197 (678)
T KOG0127|consen  164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD  197 (678)
T ss_pred             EEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence            9999999999999999999999999999986633

>KOG0121|consensus

Probab=92.24  E-value=0.39  Score=40.44  Aligned_cols=71  Identities=23%  Similarity=0.221  Sum_probs=53.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEE-ecCCC-----CeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQ-YLKSF-----RRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv-~LkSF-----~RiiVVF  111 (238)
                      ..||||-||+-.  .   --++++.||+.-|.|.                         .++ -|-.|     |=.+|.|
T Consensus        36 S~tvyVgNlSfy--t---tEEqiyELFs~cG~ir-------------------------riiMGLdr~kktpCGFCFVey   85 (153)
T KOG0121|consen   36 SCTVYVGNLSFY--T---TEEQIYELFSKCGDIR-------------------------RIIMGLDRFKKTPCGFCFVEY   85 (153)
T ss_pred             cceEEEeeeeee--e---cHHHHHHHHHhccchh-------------------------eeEeccccCCcCccceEEEEE
Confidence            579999999643  2   3468999999666543                         211 23333     5699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEE
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      .+.++|..|++.+.++-+-+++|++-+
T Consensus        86 y~~~dA~~AlryisgtrLddr~ir~D~  112 (153)
T KOG0121|consen   86 YSRDDAEDALRYISGTRLDDRPIRIDW  112 (153)
T ss_pred             ecchhHHHHHHHhccCcccccceeeec
Confidence            999999999999999999888888765

>KOG4206|consensus

Probab=90.56  E-value=1.1  Score=40.35  Aligned_cols=71  Identities=20%  Similarity=0.271  Sum_probs=54.1

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAAAA  118 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA~  118 (238)
                      +|++||+|++     .-.+.++.+|.||+                         -.=+...+..- +-++|-|.+...|.
T Consensus       148 ilf~~niP~e-----s~~e~l~~lf~qf~-------------------------g~keir~i~~~~~iAfve~~~d~~a~  197 (221)
T KOG4206|consen  148 ILFLTNIPSE-----SESEMLSDLFEQFP-------------------------GFKEIRLIPPRSGIAFVEFLSDRQAS  197 (221)
T ss_pred             EEEEecCCcc-----hhHHHHHHHHhhCc-------------------------ccceeEeccCCCceeEEecchhhhhH
Confidence            9999999973     45567788888663                         33344455533 57999999999999


Q ss_pred             HHHHHhcCCccC-CcceEEEEeC
Q psy258          119 KARINLHQSVFA-SSKINVYFVQ  140 (238)
Q Consensus       119 ~Ar~~L~~~~f~-g~~lrIyFAq  140 (238)
                      .|++.++++-+- ...|+|.|++
T Consensus       198 ~a~~~lq~~~it~~~~m~i~~a~  220 (221)
T KOG4206|consen  198 AAQQALQGFKITKKNTMQITFAK  220 (221)
T ss_pred             HHhhhhccceeccCceEEecccC
Confidence            999999998665 5678888875

>KOG0117|consensus

Probab=90.46  E-value=1.2  Score=43.86  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=57.3

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~~  113 (238)
                      -++|-.||.++|+ ++|.    -||.                         +.|++.++.-+.-      .|=++|.|.+
T Consensus        85 EVfvGkIPrD~~E-deLv----plfE-------------------------kiG~I~elRLMmD~~sG~nRGYAFVtf~~  134 (506)
T KOG0117|consen   85 EVFVGKIPRDVFE-DELV----PLFE-------------------------KIGKIYELRLMMDPFSGDNRGYAFVTFCT  134 (506)
T ss_pred             eEEecCCCccccc-hhhH----HHHH-------------------------hccceeeEEEeecccCCCCcceEEEEeec
Confidence            7899999999999 5666    3444                         6678888887764      3669999999


Q ss_pred             HHHHHHHHHHhcCCccC-CcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFA-SSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~-g~~lrIyFAq~  141 (238)
                      -+.|++|-+.|++..|. |+.|+|.-+..
T Consensus       135 Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva  163 (506)
T KOG0117|consen  135 KEEAQEAIKELNNYEIRPGKLLGVCVSVA  163 (506)
T ss_pred             HHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence            99999999999998764 67777777644

>KOG0149|consensus

Probab=90.41  E-value=0.25  Score=44.88  Aligned_cols=73  Identities=18%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      +-++|-+|.=     +.-++.|+..|.|||.|+                   .=-=+.+-..-||.|=-+|.|.|.++|+
T Consensus        13 TKifVggL~w-----~T~~~~l~~yFeqfGeI~-------------------eavvitd~~t~rskGyGfVTf~d~~aa~   68 (247)
T KOG0149|consen   13 TKIFVGGLAW-----ETHKETLRRYFEQFGEIV-------------------EAVVITDKNTGRSKGYGFVTFRDAEAAT   68 (247)
T ss_pred             EEEEEcCccc-----ccchHHHHHHHHHhCceE-------------------EEEEEeccCCccccceeeEEeecHHHHH
Confidence            3567777763     245678888888776655                   0001223334567788999999999998


Q ss_pred             HHHHHhcCCccCCcceEE
Q psy258          119 KARINLHQSVFASSKINV  136 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrI  136 (238)
                      +|-.--.-. +.|.+-+|
T Consensus        69 rAc~dp~pi-IdGR~aNc   85 (247)
T KOG0149|consen   69 RACKDPNPI-IDGRKANC   85 (247)
T ss_pred             HHhcCCCCc-cccccccc
Confidence            865432222 55554343

>KOG0113|consensus

Probab=90.23  E-value=0.84  Score=42.97  Aligned_cols=77  Identities=18%  Similarity=0.152  Sum_probs=60.8

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      .||+|.-||-...+ .    .|+..|+.||.|.                   ..-=+...+.=|+.|=++|+|.+..+-.
T Consensus       102 ~TLFv~RLnydT~E-s----kLrreF~~YG~Ik-------------------rirlV~d~vTgkskGYAFIeye~erdm~  157 (335)
T KOG0113|consen  102 KTLFVARLNYDTSE-S----KLRREFEKYGPIK-------------------RIRLVRDKVTGKSKGYAFIEYEHERDMK  157 (335)
T ss_pred             ceeeeeeccccccH-H----HHHHHHHhcCcce-------------------eEEEeeecccCCccceEEEEeccHHHHH
Confidence            49999999975554 3    3556677788875                   2233445677789999999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEe
Q psy258          119 KARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .|-...++..+.|..|-|-|-
T Consensus       158 ~AYK~adG~~Idgrri~VDvE  178 (335)
T KOG0113|consen  158 AAYKDADGIKIDGRRILVDVE  178 (335)
T ss_pred             HHHHhccCceecCcEEEEEec
Confidence            999999999999988877774

>KOG0109|consensus

Probab=89.49  E-value=0.74  Score=43.32  Aligned_cols=104  Identities=26%  Similarity=0.326  Sum_probs=72.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      |--|+|-||+++.     -..+|++||.||||                         +++.-..|++|  +|--++.++|
T Consensus         2 ~~KLFIGNLp~~~-----~~~elr~lFe~ygk-------------------------VlECDIvKNYg--FVHiEdktaa   49 (346)
T KOG0109|consen    2 PVKLFIGNLPREA-----TEQELRSLFEQYGK-------------------------VLECDIVKNYG--FVHIEDKTAA   49 (346)
T ss_pred             ccchhccCCCccc-----chHHHHHHHHhhCc-------------------------eEeeeeecccc--eEEeeccccc
Confidence            4568999999853     33467788886666                         66777788887  5666888899


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCCCCCCCCCCccCCCCCCcceeeCCCCCCCCCCCCCCCCCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSSPPVGWEPRPESEPL  182 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLISPP~SPP~gWe~~~E~~P~  182 (238)
                      .-|.+-||+.-++|..++|--+++++.   ....|-++.      |||=.--+.=-..-++-+|+
T Consensus        50 edairNLhgYtLhg~nInVeaSksKsk---~stkl~vgN------is~tctn~ElRa~fe~ygpv  105 (346)
T KOG0109|consen   50 EDAIRNLHGYTLHGVNINVEASKSKSK---ASTKLHVGN------ISPTCTNQELRAKFEKYGPV  105 (346)
T ss_pred             HHHHhhcccceecceEEEEEeccccCC---CccccccCC------CCccccCHHHhhhhcccCCc
Confidence            999999999999999999999887543   233454544      66655444322223455664

>KOG0144|consensus

Probab=88.89  E-value=0.84  Score=44.91  Aligned_cols=63  Identities=17%  Similarity=0.259  Sum_probs=53.7

Q ss_pred             HHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCCHHHHHHHHHHhcCCc-cCC--cceEEEEeCCCCC
Q psy258           82 KEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYESSAAAAKARINLHQSV-FAS--SKINVYFVQPMTP  144 (238)
Q Consensus        82 ~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~~eaA~~Ar~~L~~~~-f~g--~~lrIyFAq~~t~  144 (238)
                      ...++++|++||.|-+...||     |.|=++|.|.+.+.|..|...|++.. +.|  .+|-|-||.+.-+
T Consensus       138 e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd  208 (510)
T KOG0144|consen  138 ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD  208 (510)
T ss_pred             HHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence            346899999999999999998     66779999999999999999999964 444  5899999987554

>KOG4212|consensus

Probab=88.71  E-value=1  Score=44.61  Aligned_cols=36  Identities=17%  Similarity=0.109  Sum_probs=31.2

Q ss_pred             cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEE
Q psy258          101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINV  136 (238)
Q Consensus       101 LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrI  136 (238)
                      =|+.+=++|-|.+++.+++|...|+++.++|.++.+
T Consensus        83 GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v  118 (608)
T KOG4212|consen   83 GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV  118 (608)
T ss_pred             CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence            367788999999999999999999999998865543

>KOG1855|consensus

Probab=87.91  E-value=0.65  Score=45.57  Aligned_cols=71  Identities=27%  Similarity=0.344  Sum_probs=46.1

Q ss_pred             CCCCC-cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCC---ceEEEecCC-------
Q psy258           35 EQLPK-SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGK---PKSFQYLKS-------  103 (238)
Q Consensus        35 ~~~p~-TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---iv~fv~LkS-------  103 (238)
                      +.||. ||.++||++     +..-+.|..||+-+|.|.                .|+.-.+   .....-.++       
T Consensus       227 eel~srtivaenLP~-----Dh~~enl~kiFg~~G~Ik----------------sIRIckPgaip~d~r~~~~~~~~~~t  285 (484)
T KOG1855|consen  227 EELPSRTIVAENLPL-----DHSYENLSKIFGTVGSIK----------------SIRICKPGAIPEDVRGFPKKYFELQT  285 (484)
T ss_pred             cccccceEEEecCCc-----chHHHHHHHHhhccccee----------------eeeecCCCCCCcccccCCccchhhhh
Confidence            45665 999999998     344467888899665543                1111122   112222222       


Q ss_pred             CCeEEEEeCCHHHHHHHHHHhcC
Q psy258          104 FRRMRVNYESSAAAAKARINLHQ  126 (238)
Q Consensus       104 F~RiiVVF~~~eaA~~Ar~~L~~  126 (238)
                      --+++|-|+..++|..|+..+..
T Consensus       286 k~~AlvEye~~~~A~KA~e~~~~  308 (484)
T KOG1855|consen  286 KECALVEYEEVEAARKARELLNP  308 (484)
T ss_pred             hhhhhhhhhhhHHHHHHHHhhch
Confidence            23689999999999999999854

>KOG0145|consensus

Probab=87.48  E-value=2.7  Score=39.31  Aligned_cols=71  Identities=23%  Similarity=0.289  Sum_probs=57.6

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC------CeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF------RRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF------~RiiVVF~~  113 (238)
                      .|+|-||.+     +.....|-.||.+|                         |.+.....+|-|      |=.+|...+
T Consensus       280 ciFvYNLsp-----d~de~~LWQlFgpF-------------------------GAv~nVKvirD~ttnkCKGfgFVtMtN  329 (360)
T KOG0145|consen  280 CIFVYNLSP-----DADESILWQLFGPF-------------------------GAVTNVKVIRDFTTNKCKGFGFVTMTN  329 (360)
T ss_pred             EEEEEecCC-----CchHhHHHHHhCcc-------------------------cceeeEEEEecCCcccccceeEEEecc
Confidence            899999986     34445677888866                         556666666666      468999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      -+.|..|.+.|.|.-+.++.++|.|-.
T Consensus       330 YdEAamAi~sLNGy~lg~rvLQVsFKt  356 (360)
T KOG0145|consen  330 YDEAAMAIASLNGYRLGDRVLQVSFKT  356 (360)
T ss_pred             hHHHHHHHHHhcCccccceEEEEEEec
Confidence            999999999999999999999999943

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=86.47  E-value=2.3  Score=29.52  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=22.3

Q ss_pred             hcCCceEEEecCCCCeEEEEeCCHHHHHHHH
Q psy258           91 QFGKPKSFQYLKSFRRMRVNYESSAAAAKAR  121 (238)
Q Consensus        91 ~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar  121 (238)
                      ++|+++....=.+-..+.|.|.+..+|.+|.
T Consensus        23 ~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen   23 SFGEIVDIYVPESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             hcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence            3355555444456778999999999999873

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=86.26  E-value=4  Score=34.99  Aligned_cols=50  Identities=20%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             hhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258           89 LSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus        89 ~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      ++.||++-+... =..+.++|||.|..+|.+|....+. --.|+.++|.+-+
T Consensus       111 Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq  160 (166)
T PF15023_consen  111 LSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ  160 (166)
T ss_pred             HHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence            457788776654 3456799999999999999999987 3456677777744

>KOG0120|consensus

Probab=85.33  E-value=2.6  Score=42.17  Aligned_cols=58  Identities=19%  Similarity=0.363  Sum_probs=45.5

Q ss_pred             HHHHHHHhhhhcCCceEEEecCC---------CCeEEEEeCCHHHHHHHHHHhcCCccCCcceE-EEE
Q psy258           81 LKEQIETLLSQFGKPKSFQYLKS---------FRRMRVNYESSAAAAKARINLHQSVFASSKIN-VYF  138 (238)
Q Consensus        81 ~~~~~~~~~~~~~~iv~fv~LkS---------F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lr-IyF  138 (238)
                      |.+.++.-++.||.+..+..=+.         -|.|+|-|.+.++|++|+..|.|-.|.+..+. .||
T Consensus       422 IlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy  489 (500)
T KOG0120|consen  422 ILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY  489 (500)
T ss_pred             HHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence            44556666677887777765554         38999999999999999999999999987544 455

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=85.12  E-value=2.4  Score=40.84  Aligned_cols=76  Identities=17%  Similarity=0.323  Sum_probs=55.3

Q ss_pred             CcEEEecCCCCCCCCh---HHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---------CCCe
Q psy258           39 KSLIITNLNPDLFKDD---ALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---------SFRR  106 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~---~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---------SF~R  106 (238)
                      |-.||.-|++++=..+   .|+.  ...|.|||||.                         .++.=|         +.--
T Consensus       115 NLvYVigi~pkva~Ee~~~vLk~--~eyFGQyGkI~-------------------------KIvvNkkt~s~nst~~h~g  167 (480)
T COG5175         115 NLVYVIGIPPKVADEEVAPVLKR--HEYFGQYGKIK-------------------------KIVVNKKTSSLNSTASHAG  167 (480)
T ss_pred             ceeEEecCCCCCCcccccccccc--hhhhhhcccee-------------------------EEEecccccccccccccce
Confidence            3578889998876633   2332  35689888864                         222111         1234


Q ss_pred             EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.|.|.+-++|.++..+.+|..+-|+.++..||-.
T Consensus       168 vYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT  202 (480)
T COG5175         168 VYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT  202 (480)
T ss_pred             EEEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence            68999999999999999999999999999999754

>KOG1457|consensus

Probab=84.82  E-value=0.82  Score=41.72  Aligned_cols=63  Identities=24%  Similarity=0.313  Sum_probs=41.7

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAK  119 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~  119 (238)
                      ||+|.||...+=+ |+||    .||+.|...                       .++.+..--.+--+++-|++.+-|+.
T Consensus       212 tlfianl~~~~~e-d~l~----~~~~~~~gf-----------------------~~l~~~~~~g~~vaf~~~~~~~~at~  263 (284)
T KOG1457|consen  212 TLFIANLGPNCTE-DELK----QLLSRYPGF-----------------------HILKIRARGGMPVAFADFEEIEQATD  263 (284)
T ss_pred             hHhhhccCCCCCH-HHHH----HHHHhCCCc-----------------------eEEEEecCCCcceEeecHHHHHHHHH
Confidence            8999999887766 4444    566644110                       12222222223348889999999999


Q ss_pred             HHHHhcCCccC
Q psy258          120 ARINLHQSVFA  130 (238)
Q Consensus       120 Ar~~L~~~~f~  130 (238)
                      ||..|||+.+-
T Consensus       264 am~~lqg~~~s  274 (284)
T KOG1457|consen  264 AMNHLQGNLLS  274 (284)
T ss_pred             HHHHhhcceec
Confidence            99999998653

>KOG0106|consensus

Probab=81.17  E-value=1.3  Score=39.64  Aligned_cols=66  Identities=12%  Similarity=0.072  Sum_probs=46.6

Q ss_pred             chhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258           72 SFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .+++.++...-+.+++.+..+|.+ ..+.+ +-+..+|-|...++|..|...|++..+++..+.+++.
T Consensus       103 ~~~~~~~r~~~qdl~d~~~~~g~~-~~~~~-~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~  168 (216)
T KOG0106|consen  103 IVRNLSLRVSWQDLKDHFRPAGEV-TYVDA-RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN  168 (216)
T ss_pred             eeccchhhhhHHHHhhhhcccCCC-chhhh-hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence            344444444334444444466666 33333 6778999999999999999999999999988888664

>KOG1548|consensus

Probab=80.35  E-value=3.2  Score=39.84  Aligned_cols=85  Identities=13%  Similarity=0.035  Sum_probs=58.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe---cCCCCeEEEEeCCHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY---LKSFRRMRVNYESSA  115 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~---LkSF~RiiVVF~~~e  115 (238)
                      +.+||.|||.+|=.     +++..+|+.+|-|.           +.    +.+--+.+.+-.   -+--|-++|.|-..+
T Consensus       135 t~VYVsgLP~DiT~-----dE~~~~~sKcGiI~-----------~d----~~t~epk~KlYrd~~G~lKGDaLc~y~K~E  194 (382)
T KOG1548|consen  135 TSVYVSGLPLDITV-----DEFAEVMSKCGIIM-----------RD----PQTGEPKVKLYRDNQGKLKGDALCCYIKRE  194 (382)
T ss_pred             ceEEecCCCCcccH-----HHHHHHHHhcceEe-----------cc----CCCCCeeEEEEecCCCCccCceEEEeeccc
Confidence            35999999986543     57778888777653           00    001111111111   112267899999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      +-..|..+|++..|.|..|||.-|+...
T Consensus       195 SVeLA~~ilDe~~~rg~~~rVerAkfq~  222 (382)
T KOG1548|consen  195 SVELAIKILDEDELRGKKLRVERAKFQM  222 (382)
T ss_pred             HHHHHHHHhCcccccCcEEEEehhhhhh
Confidence            9999999999999999999999987633

>KOG1996|consensus

Probab=80.34  E-value=4.7  Score=38.23  Aligned_cols=54  Identities=22%  Similarity=0.336  Sum_probs=40.5

Q ss_pred             HHHhhhhcCCceEEEec--CCC-----CeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEE
Q psy258           85 IETLLSQFGKPKSFQYL--KSF-----RRMRVNYESSAAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus        85 ~~~~~~~~~~iv~fv~L--kSF-----~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      +.+-+++||.+...+.+  +++     -||+|-|+..+.|++|...|+|--|+|...+-.|
T Consensus       303 ~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F  363 (378)
T KOG1996|consen  303 TKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF  363 (378)
T ss_pred             HHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence            33444466655543332  666     5999999999999999999999989998777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	238
1wey_A	104	Solution Structure Of Rrm Domain In Calcipressin 1		2e-10

>pdb|1WEY|A Chain A, Solution Structure Of Rrm Domain In Calcipressin 1 Length = 104

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 82  KEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141
           + + E+L   + K  +FQY KSF+R+R+N+ +  +AA AR+ LH++ F   ++ +YF Q 
Sbjct: 24  RAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83
Query: 142 MTPFDSADQHLQPPAPTKQFLISPPSS 168
           +        HL PP P K    S PSS
Sbjct: 84  L---HIGSSHLAPPNPDK----SGPSS 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	6e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	3e-04
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	9e-04

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Length = 104

 Score =  103 bits (259), Expect = 6e-29
 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 32/132 (24%)

Query: 37  LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK 96
               LI    N D+F                              + + E+L   + K  
Sbjct: 4   GSSGLIACVANDDVFS-------------------------ESETRAKFESLFRTYDKDT 38

Query: 97  SFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPA 156
           +FQY KSF+R+R+N+ +  +AA AR+ LH++ F   ++ +YF Q +        HL PP 
Sbjct: 39  TFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHI---GSSHLAPPN 95

Query: 157 PTKQFLISPPSS 168
           P K    S PSS
Sbjct: 96  PDK----SGPSS 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 6e-06
 Identities = 39/250 (15%), Positives = 74/250 (29%), Gaps = 53/250 (21%)

Query: 2   EEDEDDHKMIINAIDNLKDTGDMGDSLDDLINDEQLPKSLIITNL----NPDLFKDDALK 57
               D    I   I +++        L  L+  +     L++  L    N   +  +A  
Sbjct: 214 TSRSDHSSNIKLRIHSIQA------ELRRLLKSKPYENCLLV--LLNVQNAKAW--NAFN 263

Query: 58  EQIETLLSQFGKPKS-FQYLKNDALKE-QIETLLSQFGKPKSFQYLKSFRRMRVNYESSA 115
              + LL+   + K    +L         ++         +    L  +   R   +   
Sbjct: 264 LSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLP 319

Query: 116 AAAKARINLHQSVFASSKINV-----YFVQPM-----TPFDSADQHLQPPAPTKQFL--- 162
                      S+ A S  +       +         T  +S+   L+P    K F    
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 163 ISPPSSP-PVG-----WEPRPESEP------LVNYDLLA-----AIASLTPGLSHELHAP 205
           + PPS+  P       W    +S+       L  Y L+      +  S+ P +  EL   
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVK 438

Query: 206 SESQPGIVVH 215
            E++    +H
Sbjct: 439 LENEY--ALH 446

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Length = 292

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 24/101 (23%)

Query: 41  LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY 100
           L +TN  P  +    +++    LL           L +            +F   + F Y
Sbjct: 120 LWMTNFPPS-YTQRNIRD----LLQDINVVALSIRLPSL-----------RFNTSRRFAY 163

Query: 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141
                   ++  S   A      L+        +      P
Sbjct: 164 --------IDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 38.4 bits (90), Expect = 9e-04
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 24/101 (23%)

Query: 41  LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY 100
           L + NL P        +E    L+  FG  +    + ++           + G+ K + +
Sbjct: 98  LCVANLPPS-LTQQQFEE----LVRPFGSLERCFLVYSE-----------RTGQSKGYGF 141

Query: 101 LKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP 141
                     Y    +AA+A+ +L         + V++   
Sbjct: 142 --------AEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	100.0
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.44
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.16
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	98.94
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.9
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.89
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.81
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.74
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.72
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	98.71
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.71
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.71
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.7
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.7
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.7
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.7
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.68
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.68
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.66
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.66
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.66
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.65
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.64
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.64
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.64
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.62
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.62
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.62
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	98.62
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	98.61
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.61
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.61
2dis_A	109	Unnamed protein product; structural genomics, RRM	98.61
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.61
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.6
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	98.6
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.6
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.6
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.59
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.59
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.59
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	98.59
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.59
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.58
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.58
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.58
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.58
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	98.57
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.57
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.57
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.57
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.56
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.56
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.55
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.54
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.54
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.54
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.53
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	98.53
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.53
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.53
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	98.53
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.53
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.52
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.52
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.52
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.52
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	98.52
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	98.52
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.51
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	98.51
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.51
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.51
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.51
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.51
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	98.51
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	98.51
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.5
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.5
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	98.5
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	98.5
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	98.5
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	98.49
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.49
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	98.49
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.49
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.49
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	98.48
2div_A	99	TRNA selenocysteine associated protein; structural	98.47
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	98.46
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.46
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.46
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	98.46
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.46
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	98.46
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.45
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.44
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.44
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	98.43
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.43
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.43
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	98.43
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.43
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.42
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.42
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	98.42
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.41
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.41
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	98.4
1x5p_A	97	Negative elongation factor E; structure genomics,	98.39
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.39
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	98.39
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.38
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	98.36
1x5o_A	114	RNA binding motif, single-stranded interacting pro	98.35
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	98.34
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.33
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.32
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.32
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	98.3
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.3
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	98.3
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	98.29
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.29
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.29
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.28
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	98.28
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	98.28
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.27
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	98.27
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.27
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.27
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	98.27
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	98.26
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	98.26
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.26
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.25
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.25
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.25
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	98.25
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	98.25
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.24
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.24
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.23
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.23
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	97.54
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	98.22
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	98.21
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	98.2
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	98.2
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	98.2
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	98.18
1x4e_A	85	RNA binding motif, single-stranded interacting pro	98.18
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.17
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	98.16
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.15
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.15
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.15
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	98.15
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	98.14
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.13
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.11
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.11
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.11
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.09
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.08
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	98.08
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	98.07
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	98.07
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.06
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	98.06
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	98.06
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.05
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.04
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.02
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	98.02
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	98.0
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	98.0
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.97
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	97.96
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	97.94
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	97.88
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	97.87
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.86
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	97.84
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.83
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	97.81
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	97.76
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.75
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	97.75
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	97.73
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	97.72
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.67
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	97.64
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	97.63
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	97.61
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	97.6
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	97.51
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	97.5
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	97.44
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	97.38
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	97.36
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	97.34
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	97.33
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	97.29
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	97.2
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	97.09
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	97.07
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	97.07
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	93.3
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	91.12

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=100.00  E-value=1.1e-33  Score=222.77  Aligned_cols=102  Identities=33%  Similarity=0.616  Sum_probs=97.2

Q ss_pred             CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      +++|||||||||+.+||.++++|++||+||+                         +|++.++|++|||||||+|+|.+.
T Consensus         2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~-------------------------~~~~~~tF~~lkSFRRirv~F~~~   56 (104)
T 1wey_A            2 SSGSSGLIACVANDDVFSESETRAKFESLFR-------------------------TYDKDTTFQYFKSFKRVRINFSNP   56 (104)
T ss_dssp             CSCCCEEEEECCCGGGGSTTTHHHHHHHHHH-------------------------TTCSSCEEEEETTTTEEEEECSST
T ss_pred             CCCCceEEEecCCHHHcCCHHHHHHHHHHHH-------------------------hhCcCcceeecCcceEEEEEeCCh
Confidence            6899999999999999999999999999999                         779999999999999999999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCCCCCCCCCCCccCCCCCCcceeeC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLIS  164 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLIS  164 (238)
                      ++|++||+.||++.|+|+.|||||||+ +++  .++||++|+++||||||
T Consensus        57 ~~A~~AR~~Lh~~~f~g~~~r~YFgq~-~~~--~~~~L~pP~p~KqFliS  103 (104)
T 1wey_A           57 LSAADARLRLHKTEFLGKEMKLYFAQT-LHI--GSSHLAPPNPDKSGPSS  103 (104)
T ss_dssp             THHHHHHHTSTTSEETTEECEEECCCC-SSC--CSCCSCCCCCCCCCCCC
T ss_pred             HHHHHHHHHhccceecCceeEEEecCC-CCC--cccccCCCCcccccccc
Confidence            999999999999999999999999996 443  78999999999999998

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.6e-13  Score=105.34  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=66.8

Q ss_pred             c-EEEecCCCCCCCChHHHHHHHHHHhhcC-CCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           40 S-LIITNLNPDLFKDDALKEQIETLLSQFG-KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        40 T-LiitnL~~~vf~~~~l~~~l~~lF~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      | |||.|||.++-. +.|+..|+.+|++|| +|+                         +++.    |+++|+|.+.++|
T Consensus        10 T~lYV~NL~~~~~~-~~lk~~L~~lF~~yGG~Vl-------------------------~Vtg----G~AfV~F~~~esA   59 (96)
T 2diu_A           10 TLLYVYNLPANKDG-KSVSNRLRRLSDNCGGKVL-------------------------SITG----CSAILRFINQDSA   59 (96)
T ss_dssp             EEEEEESCCTTSCH-HHHHHHHHHHHHTTTCCEE-------------------------ECCT----TCEEEEESSHHHH
T ss_pred             eEEEEeCCCCcCCH-HHHHHHHHHHHHHcCCeeE-------------------------EEec----CEEEEEECCHHHH
Confidence            5 899999999887 889999999999884 766                         2221    9999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCCCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPMTPF  145 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t~~  145 (238)
                      ++|.+.|++++++|++|+|.||+....+
T Consensus        60 ~~A~~~l~G~~l~gr~i~v~~A~~~sd~   87 (96)
T 2diu_A           60 ERAQKRMENEDVFGNRIIVSFTPKNREL   87 (96)
T ss_dssp             HHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred             HHHHHHhcCCccCCceEEEEecCCCcce
Confidence            9999999999999999999999985553

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.16  E-value=8.2e-11  Score=93.89  Aligned_cols=80  Identities=16%  Similarity=0.231  Sum_probs=67.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESSA  115 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~e  115 (238)
                      +||||.||+..+-. +.|++.|+.+|++||+|.                         .+...   ++.|.++|.|.+.+
T Consensus        30 ~~LfV~nL~~~~~e-~~L~~~L~~~F~~~G~I~-------------------------~v~i~~~~~~rG~aFV~F~~~~   83 (127)
T 2a3j_A           30 QVVLITNINPEVPK-EKLQALLYALASSQGDIL-------------------------DIVVDLSDDNSGKAYIVFATQE   83 (127)
T ss_dssp             SEEEEESCCTTSCH-HHHHHHHHHHHHHHSCEE-------------------------EEEECCCCSSCCCEEEEESSHH
T ss_pred             CEEEEeCCCCCCCH-HHHHHHHHHHhccCCCeE-------------------------EEEeccCCCcCCEEEEEECCHH
Confidence            59999999988766 789989999999776644                         33333   46688999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQPMTP  144 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~~t~  144 (238)
                      +|..|...|++..|.|+.|+|.||+....
T Consensus        84 ~A~~Ai~~lng~~l~gr~l~V~~a~~~~~  112 (127)
T 2a3j_A           84 SAQAFVEAFQGYPFQGNPLVITFSETPQS  112 (127)
T ss_dssp             HHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred             HHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence            99999999999999999999999987443

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=98.94  E-value=1.4e-08  Score=78.44  Aligned_cols=101  Identities=15%  Similarity=0.148  Sum_probs=70.0

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVN  110 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVV  110 (238)
                      +-++||||.||+..+-+     +.|+.+|++||+|                         ..+...+     +.+-++|.
T Consensus         5 ~~~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i-------------------------~~v~i~~~~~g~~~g~afV~   54 (116)
T 2fy1_A            5 DHPGKLFIGGLNRETNE-----KMLKAVFGKHGPI-------------------------SEVLLIKDRTSKSRGFAFIT   54 (116)
T ss_dssp             CSCCEEEEECCTTTCCH-----HHHHHHHHTSSCC-------------------------SEEEEECSTTTTCCCEEEEE
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCCE-------------------------EEEEEEECCCCCcccEEEEE
Confidence            44789999999986544     3567888866654                         4444443     44789999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCCCCCCCCCCCccCCCCCCcceeeCCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPP  166 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLISPP  166 (238)
                      |.+.++|.+|...|++..|.|..|+|.|++...........-..+...|..+.+||
T Consensus        55 F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~r~R~~~~~~~  110 (116)
T 2fy1_A           55 FENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLE  110 (116)
T ss_dssp             CSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCSSSSSCCCCCCSSCCCSCCC--
T ss_pred             ECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCccceecc
Confidence            99999999999999999999999999999874332112222222334555555554

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.90  E-value=6.3e-09  Score=76.58  Aligned_cols=79  Identities=20%  Similarity=0.305  Sum_probs=66.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~  114 (238)
                      .++|||.||+..+-+ ++|++.|+.+|++||+                         +..+...   ++.|-++|.|.+.
T Consensus         8 ~~~l~V~nLp~~~~~-~~l~~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~g~afV~f~~~   61 (97)
T 1nu4_A            8 NHTIYINNLNEKIKK-DELKKSLHAIFSRFGQ-------------------------ILDILVSRSLKMRGQAFVIFKEV   61 (97)
T ss_dssp             CSEEEEESCCTTSCH-HHHHHHHHHHHGGGSC-------------------------EEEEECCHHHHHTTCEEEEESSH
T ss_pred             CCEEEEeCCCCCCCH-HHHHHHHHHHHHhCCC-------------------------EEEEEEEcCCCcCcEEEEEeCCH
Confidence            469999999988766 7888889999996655                         4444443   3457899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      ++|..|...|++..+.|..++|.|+++.
T Consensus        62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~   89 (97)
T 1nu4_A           62 SSATNALRSMQGFPFYDKPMRIQYAKTD   89 (97)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence            9999999999999999999999999873

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.89  E-value=6.4e-09  Score=80.50  Aligned_cols=73  Identities=16%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      .+|||.|||..+-+     +.|+++|++|                         |.+..+..+++.|.++|.|.+.++|.
T Consensus        22 ~~l~V~NLp~~~te-----~~L~~lF~~f-------------------------G~V~~v~i~~~kg~AFVef~~~~~A~   71 (100)
T 3r27_A           22 PVVHIRGLIDGVVE-----ADLVEALQEF-------------------------GPISYVVVMPKKRQALVEFEDVLGAC   71 (100)
T ss_dssp             SEEEEESCCTTCCH-----HHHHHHHGGG-------------------------SCEEEEEEETTTTEEEEEESSHHHHH
T ss_pred             cEEEEeCCCCCCCH-----HHHHHHHhcc-------------------------CCEEEEEEEcCCCEEEEEECCHHHHH
Confidence            49999999987644     4567888855                         55666777788899999999999999


Q ss_pred             HHHHHhcCCc--cCCcceEEEEeCC
Q psy258          119 KARINLHQSV--FASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~--f~g~~lrIyFAq~  141 (238)
                      +|...|++.+  +.|++++|.||+.
T Consensus        72 ~Av~~ln~~~~~i~Gr~i~V~~S~~   96 (100)
T 3r27_A           72 NAVNYAADNQIYIAGHPAFVNYSTS   96 (100)
T ss_dssp             HHHHHHHHSCEEETTEEEEEEECSC
T ss_pred             HHHHHhcCCCceeCCcEEEEEeccc
Confidence            9999999986  6799999999987

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.81  E-value=2.2e-08  Score=74.47  Aligned_cols=77  Identities=22%  Similarity=0.252  Sum_probs=64.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC---CCeEEEEeCCHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS---FRRMRVNYESSA  115 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS---F~RiiVVF~~~e  115 (238)
                      ++|||.||+..+-+ ++|+..|+.+|++||                         .+..+...+.   .+.++|.|.+.+
T Consensus        10 ~~l~V~nL~~~~~~-~~l~~~l~~~F~~~G-------------------------~v~~v~i~~~~~~rg~afV~f~~~~   63 (96)
T 2dgx_A           10 ADVQVSNIDYRLSR-KELQQLLQEAFARHG-------------------------KVKSVELSPHTDYQLKAVVQMENLQ   63 (96)
T ss_dssp             EEEEEESCCTTSCH-HHHHHHHHHHHHHHS-------------------------CEEEEEECSCCSTTCCEEEEESSHH
T ss_pred             CEEEEECCCCCCCH-HHHHHHHHHhccccC-------------------------cEEEEEEEeCCCCCeEEEEEECCHH
Confidence            59999999987766 778888889999665                         4555555532   346999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|.+|...|++..|.|+.|+|.+|++
T Consensus        64 ~A~~Ai~~l~g~~~~gr~l~V~~a~~   89 (96)
T 2dgx_A           64 DAIGAVNSLHRYKIGSKKILVSLATG   89 (96)
T ss_dssp             HHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             HHHHHHHHhCCCEECCeEEEEEEcCC
Confidence            99999999999999999999999987

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.74  E-value=1.1e-07  Score=70.20  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=62.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+-+     +.|+.+|++|                         |.+..+...+..+-++|.|.+.++|
T Consensus        17 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~v~~v~~~~~~g~afV~f~~~~~A   66 (97)
T 1why_A           17 TTRLWVGGLGPNTSL-----AALAREFDRF-------------------------GSIRTIDHVKGDSFAYIQYESLDAA   66 (97)
T ss_dssp             CSCEEEECCCSSCCH-----HHHHHHHHTT-------------------------SCEEEEEECSSSCCEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCeeEEEEeCCCCEEEEEECCHHHH
Confidence            469999999987544     3466788844                         5666777777778899999999999


Q ss_pred             HHHHHHhcCCccC--CcceEEEEeCCC
Q psy258          118 AKARINLHQSVFA--SSKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~--g~~lrIyFAq~~  142 (238)
                      .+|...|++..+.  |+.|+|.|+++.
T Consensus        67 ~~A~~~l~g~~~~~~g~~l~V~~a~~~   93 (97)
T 1why_A           67 QAACAKMRGFPLGGPDRRLRVDFAKSG   93 (97)
T ss_dssp             HHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred             HHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence            9999999999999  899999999873

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.72  E-value=6.1e-08  Score=71.94  Aligned_cols=76  Identities=21%  Similarity=0.315  Sum_probs=63.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|||.||+..+-+     +.|+.+|++|                         |.+..+...++.+-++|.|.+.++|
T Consensus        15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~~~~~kg~afV~f~~~~~a   64 (99)
T 2cpj_A           15 RSRLFVGNLPPDITE-----EEMRKLFEKY-------------------------GKAGEVFIHKDKGFGFIRLETRTLA   64 (99)
T ss_dssp             TTEEEEESCCTTCCH-----HHHHHHTSTT-------------------------CCCSEEEEETTTTEEEEECSSSHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHhhc-------------------------CCeEEEEEecCCCEEEEEECCHHHH
Confidence            359999999986543     3467788855                         5566677778889999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      .+|...|++..|.|+.|+|.|+++..
T Consensus        65 ~~a~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpj_A           65 EIAKVELDNMPLRGKQLRVRFACHSA   90 (99)
T ss_dssp             HHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             HHHHHHhCCCEeCCceEEEEEcCCCC
Confidence            99999999999999999999998743

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=98.71  E-value=5.2e-08  Score=73.55  Aligned_cols=74  Identities=24%  Similarity=0.392  Sum_probs=59.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      .++|||.|||..+=+     +.|+.+|++||+                         +.++...+      +.|-++|.|
T Consensus        19 gt~lfV~nLp~~~te-----~~L~~~F~~~G~-------------------------I~~v~i~~d~~tg~~kG~afV~f   68 (99)
T 4fxv_A           19 GTNLIVNYLPQNMTQ-----DELRSLFSSIGE-------------------------VESAKLIRDKVAGHSLGYGFVNY   68 (99)
T ss_dssp             CSEEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEECSSSCCEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEeEeeecCCCCcccccEEEEE
Confidence            369999999987644     356678886655                         54444433      234589999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..|.|+.|+|.||++
T Consensus        69 ~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP   98 (99)
T 4fxv_A           69 VTAKDAERAINTLNGLRLQSKTIKVSYARP   98 (99)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            999999999999999999999999999987

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=1.9e-07  Score=70.64  Aligned_cols=76  Identities=16%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVN  110 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVV  110 (238)
                      .-.+||||.||+..+-+     +.|+.+|++||+                         +..+...+.     .+-++|.
T Consensus        13 ~~~~~l~V~nlp~~~~~-----~~l~~~f~~~G~-------------------------i~~~~i~~~~~g~~~g~afV~   62 (114)
T 2do0_A           13 RLGSTVFVANLDYKVGW-----KKLKEVFSMAGV-------------------------VVRADILEDKDGKSRGIGTVT   62 (114)
T ss_dssp             CCCSCEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTCSEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCeeeEEEEE
Confidence            33579999999986533     356788886655                         444443332     4579999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|...|++..|.|..|+|.|++.
T Consensus        63 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   93 (114)
T 2do0_A           63 FEQSIEAVQAISMFNGQLLFDRPMHVKMDER   93 (114)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             ECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence            9999999999999999999999999999876

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.71  E-value=6.5e-08  Score=69.53  Aligned_cols=74  Identities=23%  Similarity=0.283  Sum_probs=59.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~RiiVV  110 (238)
                      ++||+|.||+..+-+     +.|+.+|++||+                         +..+...+       +.|-++|.
T Consensus         4 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~~~i~~~~~~~~~~~g~afV~   53 (88)
T 4a8x_A            4 PTKVHIGRLTRNVTK-----DHIMEIFSTYGK-------------------------IKMIDMPVERMHPHLSKGYAYVE   53 (88)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEECCEETTEEEEECSEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEEeCCCCCCCCCcEEEEE
Confidence            679999999986644     356678886655                         44444332       56789999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|...|++..+.|+.++|.++.+
T Consensus        54 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   84 (88)
T 4a8x_A           54 FENPDEAEKALKHMDGGQIDGQEITATAVLA   84 (88)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred             EecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence            9999999999999999999999999999976

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=4.7e-08  Score=71.88  Aligned_cols=74  Identities=24%  Similarity=0.311  Sum_probs=59.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEE-ecC--CCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQ-YLK--SFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv-~Lk--SF~RiiVVF~~~  114 (238)
                      +.+|||.||+..+-+     +.|+.+|++|                         |.+..+. ..+  .-++++|.|.+.
T Consensus        15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~v~~~~~i~~~~~~~~afV~f~~~   64 (96)
T 2e44_A           15 IRKLQIRNIPPHLQW-----EVLDSLLVQY-------------------------GVVESCEQVNTDSETAVVNVTYSSK   64 (96)
T ss_dssp             CCCEEEEEECSSSCH-----HHHHHHHHHH-------------------------SCEEEEEEECCSSSSEEEEEEESSH
T ss_pred             CCEEEEEcCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEeecCCCCCEEEEEECCH
Confidence            569999999986544     3566788855                         5555552 333  335699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|...|++..+.|+.|+|.|+++
T Consensus        65 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~   91 (96)
T 2e44_A           65 DQARQALDKLNGFQLENFTLKVAYIPD   91 (96)
T ss_dssp             HHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence            999999999999999999999999987

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=1.4e-07  Score=69.08  Aligned_cols=75  Identities=19%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      +++|||.||+..+-+     +.|+.+|++||                         .+..+...+      +.+-++|.|
T Consensus         5 ~~~l~v~nlp~~~t~-----~~l~~~f~~~G-------------------------~v~~v~i~~~~~~~~~~g~afV~f   54 (95)
T 2dnz_A            5 SSGLYVGSLHFNITE-----DMLRGIFEPFG-------------------------KIDNIVLMKDSDTGRSKGYGFITF   54 (95)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHHTTTS-------------------------CEEEEEEECCSSSCCCCSEEEEEE
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEeEEEEeecCCCCceeeEEEEEE
Confidence            579999999986544     35677888555                         455555544      346899999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|...|++..|.|+.|+|.|++..
T Consensus        55 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   85 (95)
T 2dnz_A           55 SDSECARRALEQLNGFELAGRPMRVGHVTER   85 (95)
T ss_dssp             SCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred             CCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence            9999999999999999999999999999873

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.70  E-value=7e-08  Score=74.01  Aligned_cols=73  Identities=18%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      ++|||.||+..+-+     +.|+.+|++|                         |.+..+...++.+-++|.|.+.++|.
T Consensus        11 ~~l~V~nLp~~~te-----~~L~~~F~~~-------------------------G~i~~v~i~~~~g~afV~f~~~~~A~   60 (111)
T 1whx_A           11 TVILAKNLPAGTLA-----AEIQETFSRF-------------------------GSLGRVLLPEGGITAIVEFLEPLEAR   60 (111)
T ss_dssp             EEEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCSSSSCEEEEESCHHHHH
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEeCCCCEEEEEeCCHHHHH
Confidence            59999999976533     4567888855                         55666666677788999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|...|++..|.|..|+|.||+.
T Consensus        61 ~Ai~~l~g~~~~g~~l~V~~a~~   83 (111)
T 1whx_A           61 KAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             HHHHHHTTCBSSSSBCEEEEEET
T ss_pred             HHHHHhCCCEECCeEEEEEECCC
Confidence            99999999999999999999976

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=6e-08  Score=69.62  Aligned_cols=73  Identities=14%  Similarity=0.252  Sum_probs=61.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|+|.||+..+-+     +.|+.+|+                         .||.+..+...++.+-++|.|.+.++|
T Consensus        12 ~~~l~V~~l~~~~t~-----~~l~~~f~-------------------------~~G~i~~~~~~~~kg~afV~f~~~~~A   61 (85)
T 2ytc_A           12 ITTLYVGGLGDTITE-----TDLRNHFY-------------------------QFGEIRTITVVQRQQCAFIQFATRQAA   61 (85)
T ss_dssp             CCCEEEECCTTTSCH-----HHHHHHHH-------------------------TTSCEEEEEEEGGGTEEEEEESSHHHH
T ss_pred             ccEEEEcCCCCCCCH-----HHHHHHHH-------------------------hCCCEeEEEEECCCCEEEEEECCHHHH
Confidence            469999999986543     45667788                         456677777777888999999999999


Q ss_pred             HHHHHHh-cCCccCCcceEEEEeC
Q psy258          118 AKARINL-HQSVFASSKINVYFVQ  140 (238)
Q Consensus       118 ~~Ar~~L-~~~~f~g~~lrIyFAq  140 (238)
                      ..|...| ++..+.|+.++|.||+
T Consensus        62 ~~a~~~l~~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           62 EVAAEKSFNKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             HHHHHTTTTTCEETTEECCEEECC
T ss_pred             HHHHHHhcCCeeECCCEEEEEecC
Confidence            9999998 8899999999999975

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.68  E-value=8.4e-08  Score=73.66  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      .+|||.||+..+-+     +.|+.+|++|                         |.+..+..++..+.++|.|.+.++|.
T Consensus        16 ~~l~V~nLp~~~te-----~~L~~~F~~f-------------------------G~V~~v~i~~~kg~aFVef~~~~~A~   65 (104)
T 1wex_A           16 PVVHVRGLCESVVE-----ADLVEALEKF-------------------------GTICYVMMMPFKRQALVEFENIDSAK   65 (104)
T ss_dssp             SEEEEESCCSSCCH-----HHHHHHHTTT-------------------------SCEEEEEEETTTTEEEEEESSHHHHH
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhC-------------------------CCEEEEEEECCCCEEEEEECCHHHHH
Confidence            59999999987644     3466888855                         55666666777789999999999999


Q ss_pred             HHHHHhcCC--ccCCcceEEEEeCC
Q psy258          119 KARINLHQS--VFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~--~f~g~~lrIyFAq~  141 (238)
                      .|...|++.  .+.|+.|+|.|++.
T Consensus        66 ~Ai~~l~~~~~~i~Gr~l~V~~a~~   90 (104)
T 1wex_A           66 ECVTFAADVPVYIAGQQAFFNYSTS   90 (104)
T ss_dssp             HHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred             HHHHHhccCCceECCEEEEEEEccC
Confidence            999998764  48999999999987

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.68  E-value=8.4e-08  Score=72.71  Aligned_cols=80  Identities=14%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+-+     +.|+.+|++||++.                   ..--.+.+..-++.+-++|.|.+.++|
T Consensus        25 ~~~l~V~nLp~~~t~-----~~l~~~f~~~G~v~-------------------~~~~~~~~~~g~~~g~afV~f~~~~~a   80 (115)
T 2cpx_A           25 NKVLYLKNLSPRVTE-----RDLVSLFARFQEKK-------------------GPPIQFRMMTGRMRGQAFITFPNKEIA   80 (115)
T ss_dssp             CSEEEEECCCTTCCH-----HHHHHHTHHHHHSS-------------------SSCCEEEEECSSSCSEEEEECSSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHhCCcc-------------------ceEEEEEcCCCccceEEEEEECCHHHH
Confidence            469999999976544     45668899887763                   111123333445668899999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|...|++..+.|+.|+|.|+++
T Consensus        81 ~~Ai~~l~g~~~~g~~l~v~~a~~  104 (115)
T 2cpx_A           81 WQALHLVNGYKLYGKILVIEFGKN  104 (115)
T ss_dssp             HHHHHHSTTCBCSSCBCEEEECCC
T ss_pred             HHHHHHhCCCEeCCcEEEEEEccC
Confidence            999999999999999999999987

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.66  E-value=2.1e-07  Score=73.15  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=61.8

Q ss_pred             CCcEEEecCCCC-CCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNPD-LFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~~-vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      ..+|||.||+.. +-+ +    .|+.+|++|                         |.+..+..+++.+.++|.|.+.++
T Consensus        25 ~~~l~V~NLp~~~~te-~----~L~~lF~~f-------------------------G~V~~v~i~~~kg~aFVef~~~~~   74 (112)
T 1x4f_A           25 GRVIHLSNLPHSGYSD-S----AVLKLAEPY-------------------------GKIKNYILMRMKSQAFIEMETRED   74 (112)
T ss_dssp             CCEEEEESCCCSSCCS-H----HHHTTTTTT-------------------------SCCSEEEEETTTTEEEEECSSHHH
T ss_pred             CCEEEEeCCCCccCCH-H----HHHHHHHhc-------------------------CCEEEEEEecCCCEEEEEECCHHH
Confidence            359999999986 655 3    456778855                         556666667888999999999999


Q ss_pred             HHHHHHHhcC--CccCCcceEEEEeCCCCC
Q psy258          117 AAKARINLHQ--SVFASSKINVYFVQPMTP  144 (238)
Q Consensus       117 A~~Ar~~L~~--~~f~g~~lrIyFAq~~t~  144 (238)
                      |..|...|++  ..+.|+.|+|.||+....
T Consensus        75 A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~  104 (112)
T 1x4f_A           75 AMAMVDHCLKKALWFQGRCVKVDLSEKYKK  104 (112)
T ss_dssp             HHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred             HHHHHHHhccCCceECCEEEEEEECccccc
Confidence            9999998875  458999999999987443

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.66  E-value=1.7e-07  Score=69.63  Aligned_cols=75  Identities=19%  Similarity=0.203  Sum_probs=60.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.+-++|.|
T Consensus        12 ~~~l~v~nLp~~~t~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f   61 (102)
T 1x5s_A           12 EGKLFVGGLSFDTNE-----QSLEQVFSKYGQ-------------------------ISEVVVVKDRETQRSRGFGFVTF   61 (102)
T ss_dssp             CSEEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------CCEEEECCCSSSCSCCSEEEEEC
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEeCCCCCCcccEEEEEE
Confidence            579999999976544     356778886654                         54555544      346899999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|...|++..|.|+.|+|.|++..
T Consensus        62 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   92 (102)
T 1x5s_A           62 ENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS   92 (102)
T ss_dssp             SSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            9999999999999999999999999999873

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.66  E-value=4.7e-08  Score=72.66  Aligned_cols=84  Identities=15%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             cccccCCCCC-CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCe
Q psy258           28 LDDLINDEQL-PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRR  106 (238)
Q Consensus        28 ~~~~~~~~~~-p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~R  106 (238)
                      .+++.....- .+||||.||+..+-+     +.|+.+|++||                         .+..+...++.+-
T Consensus        16 ~~~~~~~~~~~~~~l~V~nlp~~~~~-----~~l~~~f~~~G-------------------------~i~~~~~~~~~g~   65 (101)
T 2la4_A           16 VDHIIRSAPPRVTTAYIGNIPHFATE-----ADLIPLFQNFG-------------------------FILDFKHYPEKGC   65 (101)
T ss_dssp             HHHHHTTSCSSCCEEEEESCCTTCCH-----HHHHHHHHTTS-------------------------CCSEEEEETTTTE
T ss_pred             hhhhhhcCCCCCCEEEEcCCCcccCH-----HHHHHHHHhCC-------------------------CEEEEEEecCCCE
Confidence            4444443332 359999999986644     45667888554                         4556666688899


Q ss_pred             EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.|.+.++|.+|...|++..+.|..++|.||++
T Consensus        66 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  100 (101)
T 2la4_A           66 CFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE  100 (101)
T ss_dssp             EEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred             EEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence            99999999999999999999999999999999875

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.65  E-value=1.5e-07  Score=70.07  Aligned_cols=76  Identities=22%  Similarity=0.266  Sum_probs=61.2

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEe
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNY  111 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF  111 (238)
                      .-..+|||.||+..+-+     +.|+.+|++||+                         +..+...+    +.+-++|.|
T Consensus        13 ~~~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~g~afV~f   62 (103)
T 2cqi_A           13 GQPRTLYVGNLSRDVTE-----VLILQLFSQIGP-------------------------CKSCKMITEHTSNDPYCFVEF   62 (103)
T ss_dssp             CCCCEEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------EEEEEEECCCCSSCCEEEEEE
T ss_pred             CCCCEEEEeCCCccCCH-----HHHHHHHHhcCC-------------------------EeEEEEEecCCCCCCEEEEEE
Confidence            44679999999986543     356778886654                         54544444    456799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..+.|+.|+|.|++.
T Consensus        63 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   92 (103)
T 2cqi_A           63 YEHRDAAAALAAMNGRKILGKEVKVNWATT   92 (103)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence            999999999999999999999999999987

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.64  E-value=7.5e-08  Score=74.19  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=60.9

Q ss_pred             CCcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      ..+|||.||+. .+-+     +.|+.+|++|                         |.+..+..++..+.++|.|.+.++
T Consensus        15 ~~~l~V~nLp~~~~te-----~dL~~lF~~f-------------------------G~V~~v~i~~~kg~aFVef~~~~~   64 (102)
T 1x4d_A           15 RRVVHIMDFQRGKNLR-----YQLLQLVEPF-------------------------GVISNHLILNKINEAFIEMATTED   64 (102)
T ss_dssp             CCEEEEESCCCSSSHH-----HHHHTTTGGG-------------------------SCEEEEEECSSSSCEEEEESSHHH
T ss_pred             CCEEEEeCCCCCcCCH-----HHHHHHHHhc-------------------------CCEEEEEEEcCCCEEEEEECCHHH
Confidence            35999999997 6533     3566788855                         556677777877889999999999


Q ss_pred             HHHHHHHhcCCc--cCCcceEEEEeCC
Q psy258          117 AAKARINLHQSV--FASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~--f~g~~lrIyFAq~  141 (238)
                      |..|...|++..  +.|++|+|.||+.
T Consensus        65 A~~Ai~~l~~~~~~~~Gr~l~V~~a~~   91 (102)
T 1x4d_A           65 AQAAVDYYTTTPALVFGKPVRVHLSQK   91 (102)
T ss_dssp             HHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             HHHHHHHHcCCCceECCcEEEEEECCC
Confidence            999999998754  8999999999986

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.64  E-value=1.2e-07  Score=67.89  Aligned_cols=73  Identities=19%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      .++|+|.||+..+-+     +.|+.+|++||+                         +..+...+      +.+-++|.|
T Consensus         7 ~~~l~V~nl~~~~~~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f   56 (85)
T 3mdf_A            7 KRVLYVGGLAEEVDD-----KVLHAAFIPFGD-------------------------ITDIQIPLDYETEKHRGFAFVEF   56 (85)
T ss_dssp             SSEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEECCEETTTTEECSEEEEEE
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHhccCC-------------------------EEEEEEEECCCCCccccEEEEEE
Confidence            469999999976543     456778886654                         44444332      346699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .+.++|.+|...|++..+.|+.++|.||+
T Consensus        57 ~~~~~a~~A~~~l~g~~~~g~~l~v~~ak   85 (85)
T 3mdf_A           57 ELAEDAAAAIDNMNESELFGRTIRVNLAK   85 (85)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            99999999999999999999999999975

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.64  E-value=5.2e-08  Score=71.38  Aligned_cols=74  Identities=20%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+-+     +.|+.+|++||+++                         ..+.+++.+-++|.|.+.++|
T Consensus         8 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~vv-------------------------~~~~~~~~g~afV~f~~~~~A   57 (93)
T 2cqh_A            8 MNKLYIGNLSPAVTA-----DDLRQLFGDRKLPL-------------------------AGQVLLKSGYAFVDYPDQNWA   57 (93)
T ss_dssp             CCCEEEECCCTTCCH-----HHHHHHHHHTTCCC-------------------------SSCEEEETTEEEECCSCHHHH
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHHcCCce-------------------------EEEEEcCCCEEEEEECCHHHH
Confidence            579999999987544     45678888776632                         233335678899999999999


Q ss_pred             HHHHHHhcC-CccCCcceEEEEeCC
Q psy258          118 AKARINLHQ-SVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~-~~f~g~~lrIyFAq~  141 (238)
                      .+|...|++ ..+.|..++|.|+++
T Consensus        58 ~~A~~~l~g~~~~~g~~l~v~~a~~   82 (93)
T 2cqh_A           58 IRAIETLSGKVELHGKIMEVDYSVS   82 (93)
T ss_dssp             HHHHHHHTTTCEETTEECEEEECCC
T ss_pred             HHHHHHccCCeeECCEEEEEEEccC
Confidence            999999999 999999999999987

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.62  E-value=3.6e-07  Score=68.17  Aligned_cols=76  Identities=18%  Similarity=0.241  Sum_probs=61.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-------CCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-------FRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-------F~RiiVV  110 (238)
                      ..+|||.||+..+-+     +.|+.+|++|                         |.+..+...+.       .+-++|.
T Consensus        15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~~g~afV~   64 (107)
T 2cph_A           15 TSKILVRNIPFQANQ-----REIRELFSTF-------------------------GELKTVRLPKKMTGTGAHRGFGFVD   64 (107)
T ss_dssp             CCCEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCCCCSSSCSSCSEEEEE
T ss_pred             CCEEEEeCCCCcCCH-----HHHHHHHHcc-------------------------CCeEEEEEecCCCCCCCcCceEEEE
Confidence            469999999986544     3467788855                         55656665554       4679999


Q ss_pred             eCCHHHHHHHHHHh-cCCccCCcceEEEEeCCCC
Q psy258          111 YESSAAAAKARINL-HQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       111 F~~~eaA~~Ar~~L-~~~~f~g~~lrIyFAq~~t  143 (238)
                      |.+.++|.+|...| ++..|.|..|+|.|+++..
T Consensus        65 f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~   98 (107)
T 2cph_A           65 FITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV   98 (107)
T ss_dssp             ESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred             ECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence            99999999999999 8999999999999998743

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.62  E-value=1.5e-07  Score=71.11  Aligned_cols=75  Identities=12%  Similarity=0.211  Sum_probs=63.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|||.||+..+-+     +.|+.+|++                         ||.+..+...+..+-++|.|.+.++|
T Consensus        25 ~~~l~V~nl~~~~t~-----~~l~~~F~~-------------------------~G~i~~v~i~~~~g~afV~f~~~~~a   74 (109)
T 1x4g_A           25 NCTVYCGGIASGLTD-----QLMRQTFSP-------------------------FGQIMEIRVFPEKGYSFVRFSTHESA   74 (109)
T ss_dssp             CCEEEEECCSSCCCH-----HHHHHHHHH-------------------------HSCEEEEEEETTTTEEEEEESSHHHH
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHh-------------------------cCCeEEEEEeCCCCEEEEEECCHHHH
Confidence            359999999986644     356677884                         46677777777788999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+|...|++..|.|..|+|.|+++.
T Consensus        75 ~~A~~~l~g~~~~g~~l~v~~a~~~   99 (109)
T 1x4g_A           75 AHAIVSVNGTTIEGHVVKCYWGKES   99 (109)
T ss_dssp             HHHHHHHTTCEETTEECEEECCCCC
T ss_pred             HHHHHHcCCCEECCcEEEEEecCCC
Confidence            9999999999999999999999873

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.62  E-value=2.7e-07  Score=70.00  Aligned_cols=76  Identities=14%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..||||.||+..+-+     +.|+.+|++||+                         +..+...+.      .+-++|.|
T Consensus        15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f   64 (115)
T 2dgo_A           15 HFHVFVGDLSPEITT-----EDIKAAFAPFGR-------------------------ISDARVVKDMATGKSKGYGFVSF   64 (115)
T ss_dssp             CEEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEEcCCCCCcceEEEEEE
Confidence            359999999986544     356788886654                         555544443      35799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      .+.++|.+|...|++..|.|+.|+|.|++...
T Consensus        65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   96 (115)
T 2dgo_A           65 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKP   96 (115)
T ss_dssp             SSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence            99999999999999999999999999998743

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=98.62  E-value=1.6e-07  Score=74.26  Aligned_cols=88  Identities=14%  Similarity=0.125  Sum_probs=65.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+-.     +.|+.+|++||+|....          +.-+    -++.....-++.|-++|.|.+.++|
T Consensus        45 ~~~l~V~nLp~~~te-----~~L~~~F~~~G~i~~~~----------~~~~----~di~~~~~g~~~g~afV~f~~~~~A  105 (143)
T 3egn_A           45 NCRIYVKNLAKHVQE-----KDLKYIFGRYVDFSSET----------QRIM----FDIRLMKEGRMKGQAFIGLPNEKAA  105 (143)
T ss_dssp             CSEEEEEEECTTCCH-----HHHHHHHGGGCCTTCHH----------HHHH----CEEEEEEETTTEEEEEEECSSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHhCCccccc----------ccce----eeEEeccCCCcccEEEEEeCCHHHH
Confidence            359999999986544     45678999998876100          0000    0122224456778899999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPMTP  144 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t~  144 (238)
                      ..|...|++..|.|..|+|.||++..+
T Consensus       106 ~~Ai~~lng~~~~g~~l~V~~a~~~~~  132 (143)
T 3egn_A          106 AKALKEANGYVLFGKPMVVQFARSARP  132 (143)
T ss_dssp             HHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred             HHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence            999999999999999999999987443

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=98.61  E-value=6.3e-08  Score=71.78  Aligned_cols=74  Identities=12%  Similarity=0.183  Sum_probs=56.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcC-CCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFG-KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVV  110 (238)
                      .++|+|.|||..+-+     +.|+.+|++|| +|.                         ++...      ++.|=++|.
T Consensus         1 S~~i~v~nLp~~~te-----~~l~~~F~~~G~~v~-------------------------~v~i~~d~~t~~~rg~aFV~   50 (91)
T 2lxi_A            1 SNIVMLRMLPQAATE-----DDIRGQLQSHGVQAR-------------------------EVRLMRNKSSGQSRGFAFVE   50 (91)
T ss_dssp             CCEEEEETCCSSCCH-----HHHHHHHHHHTCCCS-------------------------BCCSSSCSSSCCCSSEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHhCCEeE-------------------------EEEEEecCCCCCcCceEEEE
Confidence            379999999987655     35667888776 433                         22222      344669999


Q ss_pred             eCCHHHHHHHHHHhc-CCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLH-QSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~-~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|+..++ +..+.|+.++|.||++
T Consensus        51 F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~   82 (91)
T 2lxi_A           51 FSHLQDATRWMEANQHSLNILGQKVSMHYSDP   82 (91)
T ss_dssp             CSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred             ecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence            999999999998875 5679999999999987

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.61  E-value=1.9e-07  Score=68.90  Aligned_cols=74  Identities=22%  Similarity=0.242  Sum_probs=59.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      .+||||.||+..+-+     +.|+.+|++|                         |.+..+...+.      .+-++|.|
T Consensus         8 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f   57 (99)
T 1whw_A            8 SGRLFVRNLSYTSSE-----EDLEKLFSAY-------------------------GPLSELHYPIDSLTKKPKGFAFVTF   57 (99)
T ss_dssp             CEEEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCCCTTTCCCCSEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEeEEEEEecCCCCCcCeEEEEEE
Confidence            469999999986544     3567788855                         44555554443      36799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..|.|+.|+|.|++.
T Consensus        58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   87 (99)
T 1whw_A           58 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTI   87 (99)
T ss_dssp             SSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            999999999999999999999999999987

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=4.1e-07  Score=67.32  Aligned_cols=78  Identities=21%  Similarity=0.266  Sum_probs=63.4

Q ss_pred             CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      .....+|||.||+..+-+     +.|+.+|++||+|.                        +.+..-++.+-++|.|.+.
T Consensus        16 ~~~~~~l~V~nL~~~~t~-----~~l~~~F~~~G~v~------------------------~~~~~~~~~g~afV~f~~~   66 (97)
T 2e5j_A           16 APLAADVYVGNLPRDARV-----SDLKRALRELGSVP------------------------LRLTWQGPRRRAFLHYPDS   66 (97)
T ss_dssp             SCCCCEEEEECCCTTCCH-----HHHHHHHHHTTCCC------------------------SEEEEETTTTEEEEECSSH
T ss_pred             CCCCCEEEEeCCCCcCcH-----HHHHHHHHhcCCEE------------------------EEEEcCCCCcEEEEEECCH
Confidence            345679999999986654     35678899887743                        2333346778899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|..|...|++..|.|+.++|.++++
T Consensus        67 ~~a~~A~~~l~g~~~~g~~l~V~~a~~   93 (97)
T 2e5j_A           67 AAAQQAVSCLQGLRLGTDTLRVALARQ   93 (97)
T ss_dssp             HHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred             HHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence            999999999999999999999999987

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.61  E-value=4.8e-07  Score=67.85  Aligned_cols=77  Identities=23%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCC-ceEEEec-------CCCCeEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGK-PKSFQYL-------KSFRRMRV  109 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~fv~L-------kSF~RiiV  109 (238)
                      .+||||.||+..+-+     +.|+.+|++|                         |. +..+...       ++.+-++|
T Consensus         8 ~~~l~V~nLp~~~t~-----~~l~~~f~~~-------------------------G~~v~~v~i~~~~~~~g~~~g~afV   57 (109)
T 2dis_A            8 NCRLFIGGIPKMKKR-----EEILEEIAKV-------------------------TEGVLDVIVYASAADKMKNRGFAFV   57 (109)
T ss_dssp             SEEEEEECCCTTSCH-----HHHHHHHHHH-------------------------STTEEEEECCSSSCTTTTTCCEEEE
T ss_pred             CCEEEEeCCCCcCCH-----HHHHHHHHHh-------------------------cCCceEEEEEccCCCCCCcCcEEEE
Confidence            469999999976543     4566777845                         55 5555555       56678999


Q ss_pred             EeCCHHHHHHHHHHhc--CCccCCcceEEEEeCCCCC
Q psy258          110 NYESSAAAAKARINLH--QSVFASSKINVYFVQPMTP  144 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~--~~~f~g~~lrIyFAq~~t~  144 (238)
                      .|.+.++|..|...|+  +..+.|..++|.||++...
T Consensus        58 ~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~   94 (109)
T 2dis_A           58 EYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID   94 (109)
T ss_dssp             EESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred             EecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence            9999999999999997  6889999999999987443

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.61  E-value=1.3e-07  Score=79.21  Aligned_cols=73  Identities=16%  Similarity=0.276  Sum_probs=57.5

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-C-CCCeEEEEeCCHHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-K-SFRRMRVNYESSAAA  117 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-k-SF~RiiVVF~~~eaA  117 (238)
                      +|||.||+..+=+     +.|+.+|++||+|.                         .+... + +-+.++|.|.+.++|
T Consensus        48 ~l~VgNL~~~vte-----d~L~~~Fs~fG~V~-------------------------~V~i~~k~~rgfAFVeF~d~~~A   97 (164)
T 1sjr_A           48 RIIVENLFYPVTL-----DVLHQIFSKFGTVL-------------------------KIITFTKNNQFQALLQYADPVSA   97 (164)
T ss_dssp             EEEECSCCSCCCH-----HHHHHHHHHHSCEE-------------------------EEEEEESSSCEEEEEEESCHHHH
T ss_pred             EEEEeCcCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEEeCCCCCEEEEEECCHHHH
Confidence            7899999876544     35778899676644                         43333 2 234799999999999


Q ss_pred             HHHHHHhcCCccCC--cceEEEEeCCC
Q psy258          118 AKARINLHQSVFAS--SKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g--~~lrIyFAq~~  142 (238)
                      ..|+..|++..|.+  ..|+|.|+++.
T Consensus        98 ~~Ai~~LnG~~i~g~g~~L~V~~Ak~~  124 (164)
T 1sjr_A           98 QHAKLSLDGQNIYNACCTLRIDFSKLT  124 (164)
T ss_dssp             HHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred             HHHHHHhCCCEecCCCcEEEEEEecCC
Confidence            99999999999966  89999999883

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.5e-07  Score=70.05  Aligned_cols=75  Identities=23%  Similarity=0.265  Sum_probs=60.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~  113 (238)
                      ..+|||.||+..+-+     +.|+.+|++||                         .+..+...    ++.+-++|.|.+
T Consensus        15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~g~~~g~afV~f~~   64 (103)
T 2d9p_A           15 VVNLYVKNLDDGIDD-----ERLRKAFSPFG-------------------------TITSAKVMMEGGRSKGFGFVCFSS   64 (103)
T ss_dssp             CCCEEEECCCTTCCH-----HHHHHTTTTTS-------------------------CEEEEEEEECSSSEEEEEEEEESS
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEcCCCCcCEEEEEEECC
Confidence            469999999986544     45667888554                         45555555    345679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .++|.+|...|++..|.|+.|+|.|+++.
T Consensus        65 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2d9p_A           65 PEEATKAVTEMNGRIVATKPLYVALAQRK   93 (103)
T ss_dssp             HHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred             HHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence            99999999999999999999999999873

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=98.60  E-value=1.1e-07  Score=71.91  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~  112 (238)
                      +||||.||+..+=+     +.|+.+|++||++.                       +.++...      ++.|=++|.|.
T Consensus        10 ~tlfV~nL~~~~te-----e~L~~~F~~~G~i~-----------------------v~~v~i~~d~~tg~srG~aFV~f~   61 (95)
T 2lkz_A           10 DTIILRNIAPHTVV-----DSIMTALSPYASLA-----------------------VNNIRLIKDKQTQQNRGFAFVQLS   61 (95)
T ss_dssp             CEEEEESCCTTCCH-----HHHHHHSTTTCCCC-----------------------GGGEECCCCSSSSSCSSEEEEECS
T ss_pred             CEEEEeCCCCcCCH-----HHHHHHHHhhCCcc-----------------------EEEEEEEecCCCCCCceEeEEEEC
Confidence            79999999986544     46678899887642                       2333332      34567999999


Q ss_pred             CHHHHHHHHHHhcCCc----cCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSV----FASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~----f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..    +.|+.++|.||++
T Consensus        62 ~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           62 SAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS   94 (95)
T ss_dssp             SSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred             CHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence            9999999999999964    7799999999986

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.60  E-value=3.7e-07  Score=68.00  Aligned_cols=76  Identities=28%  Similarity=0.333  Sum_probs=60.8

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC----CCeEEEEeC
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS----FRRMRVNYE  112 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS----F~RiiVVF~  112 (238)
                      -+.+|||.||+..+-+     +.|+.+|++||+                         +..+...+.    .+-++|.|.
T Consensus        14 ~~~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------v~~v~i~~~~~~~~g~afV~f~   63 (103)
T 2cq3_A           14 TPKRLHVSNIPFRFRD-----PDLRQMFGQFGK-------------------------ILDVEIIFNERGSKGFGFVTFE   63 (103)
T ss_dssp             CCCEEEEESCCTTCCH-----HHHHHHGGGTSC-------------------------EEEEEEECCTTTTCCEEEEEES
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCcEEEEEEEC
Confidence            3579999999986544     346788886654                         545444433    567999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      +.++|.+|...|++..|.|+.|+|.|+++.
T Consensus        64 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   93 (103)
T 2cq3_A           64 NSADADRAREKLHGTVVEGRKIEVNNATAR   93 (103)
T ss_dssp             CHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence            999999999999999999999999999873

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=1.9e-07  Score=68.23  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      .++|||.||+..+-+     +.|+.+|++|                         |.+..+...+      +.+-++|.|
T Consensus        16 ~~~l~V~nlp~~~t~-----~~l~~~f~~~-------------------------G~v~~v~i~~~~~~~~~~g~afV~f   65 (94)
T 2e5h_A           16 KSTVYVSNLPFSLTN-----NDLYRIFSKY-------------------------GKVVKVTIMKDKDTRKSKGVAFILF   65 (94)
T ss_dssp             TTSEEEESCCTTSCH-----HHHHHHTTTT-------------------------SCEEEEEECCCSSSCCCTTCEEEEE
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEeCCCCCCcccEEEEEE
Confidence            469999999976544     3467788855                         5555555544      345799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .+.++|.+|...|++..|.|+.|+|.||+
T Consensus        66 ~~~~~A~~A~~~l~g~~~~g~~l~v~~ak   94 (94)
T 2e5h_A           66 LDKDSAQNCTRAINNKQLFGRVIKASIAI   94 (94)
T ss_dssp             SCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred             CCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence            99999999999999999999999999985

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.59  E-value=1.5e-07  Score=66.98  Aligned_cols=73  Identities=14%  Similarity=0.128  Sum_probs=58.3

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      .||+|.||+..+-+     +.|+.+|++||+                         +..+...+.      .|-++|.|.
T Consensus         2 ~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------i~~~~i~~~~~~~~~~g~afV~f~   51 (83)
T 3md1_A            2 FNLFVGDLNVNVDD-----ETLRNAFKDFPS-------------------------YLSGHVMWDMQTGSSRGYGFVSFT   51 (83)
T ss_dssp             EEEEEECCCTTCCH-----HHHHHHHTTSTT-------------------------EEEEEEEECTTTCCEEEEEEEEES
T ss_pred             eEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEEcCCCCCccceEEEEEC
Confidence            48999999986543     456678885554                         555444433      456999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..+.|..++|.|+++
T Consensus        52 ~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   80 (83)
T 3md1_A           52 SQDDAQNAMDSMQGQDLNGRPLRINWAAK   80 (83)
T ss_dssp             CHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence            99999999999999999999999999986

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.59  E-value=2.4e-07  Score=70.82  Aligned_cols=73  Identities=16%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      ++|||.||+..+-+     +.|+.+|++|                         |.+..+..++..+.++|.|.+.++|.
T Consensus        16 ~~l~V~nLp~~~te-----~~L~~~F~~f-------------------------G~v~~v~i~~~kg~aFVef~~~~~A~   65 (101)
T 2cq1_A           16 RVLHIRKLPGEVTE-----TEVIALGLPF-------------------------GKVTNILMLKGKNQAFLELATEEAAI   65 (101)
T ss_dssp             SEEEEESCCTTCCH-----HHHHHTTTTT-------------------------SCEEEEEEETTTTEEEEEESSHHHHH
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEECCCCEEEEEECCHHHHH
Confidence            59999999986644     3466788855                         55666777778889999999999999


Q ss_pred             HHHHHhc--CCccCCcceEEEEeCC
Q psy258          119 KARINLH--QSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~--~~~f~g~~lrIyFAq~  141 (238)
                      .|...|+  +..+.|++|+|.||+.
T Consensus        66 ~Ai~~l~~~~~~~~Gr~l~V~~a~~   90 (101)
T 2cq1_A           66 TMVNYYSAVTPHLRNQPIYIQYSNH   90 (101)
T ss_dssp             HHHHHHHHSCCEETTEECEEEECSC
T ss_pred             HHHHHhccCCceECCcEEEEEEcCc
Confidence            9999875  4568999999999987

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.8e-07  Score=67.13  Aligned_cols=73  Identities=29%  Similarity=0.302  Sum_probs=59.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+-+     +.|+.+|++||+                         +..+...|  +-++|.|.+.++|
T Consensus         8 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~~~~--g~afV~f~~~~~A   55 (90)
T 2dnq_A            8 MVKLFIGNLPREATE-----QEIRSLFEQYGK-------------------------VLECDIIK--NYGFVHIEDKTAA   55 (90)
T ss_dssp             CEEEEEESCCSSCCH-----HHHHHHHHTSSC-------------------------EEEEEEET--TEEEEEESSHHHH
T ss_pred             CeEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEEC--CEEEEEECCHHHH
Confidence            469999999987644     346788885554                         55555444  5799999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+|...|++..+.|+.|+|.|+++.
T Consensus        56 ~~A~~~l~g~~~~g~~l~v~~a~~~   80 (90)
T 2dnq_A           56 EDAIRNLHHYKLHGVNINVEASKNK   80 (90)
T ss_dssp             HHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred             HHHHHHhcCCccCCcEEEEEECCCC
Confidence            9999999999999999999999873

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=98.59  E-value=1.4e-07  Score=69.09  Aligned_cols=74  Identities=19%  Similarity=0.016  Sum_probs=54.0

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcC--CCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFG--KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~  113 (238)
                      ||||.||+..+-+     +.|+.+|++||  ++.                       -+.+..=    ++.|-++|.|.+
T Consensus         3 ~l~V~nL~~~~t~-----~~l~~~F~~~G~~~v~-----------------------~v~i~~~~~~g~~kG~afV~f~~   54 (90)
T 3p5t_L            3 ALYIGNLTWWTTD-----EDLTEAVHSLGVNDIL-----------------------EIKFFENRANGQSKGFALVGVGS   54 (90)
T ss_dssp             -CEEESCCTTCCH-----HHHHHHHHTTTCCCCC-----------------------CEEEEECTTTCCEEEEEEECC-C
T ss_pred             EEEEeCCCCCCCH-----HHHHHHHHHhCCCceE-----------------------EEEEEecCCCCccCcEEEEEECC
Confidence            7999999976543     45678899777  543                       1222222    223459999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|.+|...|++..|.|+.|+|.++.+
T Consensus        55 ~~~a~~Ai~~l~g~~~~gr~i~V~~~~~   82 (90)
T 3p5t_L           55 EASSKKLMDLLPKRELHGQNPVVTPSNK   82 (90)
T ss_dssp             HHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred             HHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence            9999999999999999999999999887

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.59  E-value=2.6e-07  Score=68.08  Aligned_cols=73  Identities=16%  Similarity=0.162  Sum_probs=59.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      ++|||.||+..+-+     +.|+.+|++||                         .+..+...+.      .|-++|.|.
T Consensus         3 ~~l~V~nLp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~~g~~~g~afV~f~   52 (96)
T 2x1f_A            3 RVVYLGSIPYDQTE-----EQILDLCSNVG-------------------------PVINLKMMFDPQTGRSKGYAFIEFR   52 (96)
T ss_dssp             SEEEEESCCTTCCH-----HHHHHHHHTTS-------------------------CEEEEECCBCTTTCCBCSEEEEEES
T ss_pred             cEEEEECCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEeCCCCCccceEEEEEEC
Confidence            59999999976543     45678888555                         4555554433      567999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..+.|+.++|.|+++
T Consensus        53 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   81 (96)
T 2x1f_A           53 DLESSASAVRNLNGYQLGSRFLKCGYSSN   81 (96)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             CHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence            99999999999999999999999999987

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.58  E-value=1.4e-07  Score=68.56  Aligned_cols=75  Identities=16%  Similarity=0.122  Sum_probs=60.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~  113 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+    +.+-++|.|.+
T Consensus         8 ~~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------v~~~~i~~~~g~~~g~afV~f~~   57 (92)
T 2dgv_A            8 ACQIFVRNLPFDFTW-----KMLKDKFNECGH-------------------------VLYADIKMENGKSKGCGVVKFES   57 (92)
T ss_dssp             CCEEEECSCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEESSSCEEEEEEEEESS
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEccCCCcceEEEEEECC
Confidence            579999999976544     456788886655                         44444433    34679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .++|.+|...|++..|.|+.|+|.|+++.
T Consensus        58 ~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   86 (92)
T 2dgv_A           58 PEVAERACRMMNGMKLSGREIDVRIDRNA   86 (92)
T ss_dssp             HHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred             HHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            99999999999999999999999999873

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.58  E-value=3e-07  Score=79.25  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=66.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~  114 (238)
                      .+||||.||+..+-+ ++|++.|..+|++||+                         +..+...+   +.|-++|.|.+.
T Consensus         9 ~~~l~V~nlp~~~~~-~~l~~~L~~~F~~~G~-------------------------i~~v~~~~~~~~~g~afV~f~~~   62 (282)
T 3pgw_A            9 NHTIYINNLNEKIKK-DELKKSLYAIFSQFGQ-------------------------ILDILVSRSLKMRGQAFVIFKEV   62 (282)
T ss_pred             CCEEEEeCCCCCCCH-HHHHHHHHHHHhccCC-------------------------eEEEEEcCCCCcceEEEEEECCH
Confidence            359999999988766 7898889999996655                         44444443   557899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      ++|.+|...|++..|.|+.|+|.|++...
T Consensus        63 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   91 (282)
T 3pgw_A           63 SSATNALRSMQGFPFYDKPMRIQYAKTDS   91 (282)
T ss_pred             HHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence            99999999999999999999999997644

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=2.8e-07  Score=68.32  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=59.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      +++|||.||+..+-+     +.|+.+|++||+                         +..+...+     +.+-++|.|.
T Consensus        17 ~~~l~v~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~   66 (100)
T 2do4_A           17 KHKLFISGLPFSCTK-----EELEEICKAHGT-------------------------VKDLRLVTNRAGKPKGLAYVEYE   66 (100)
T ss_dssp             CSCEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTSCEEEEEEEEES
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------eEEEEEEECCCCCEEeEEEEEEC
Confidence            469999999986544     356788886654                         44444443     2356999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..+.|..|+|.|+++
T Consensus        67 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   95 (100)
T 2do4_A           67 NESQASQAVMKMDGMTIKENIIKVAISNS   95 (100)
T ss_dssp             SHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            99999999999999999999999999987

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=2.4e-07  Score=67.78  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=59.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+-+     +.|+.+|++||                         .+..+...+.  -++|.|.+.++|
T Consensus        10 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G-------------------------~v~~v~~~~~--~afV~f~~~~~a   57 (92)
T 2dgt_A           10 STKLHVGNISPTCTN-----QELRAKFEEYG-------------------------PVIECDIVKD--YAFVHMERAEDA   57 (92)
T ss_dssp             SEEEEEESCCSSCCH-----HHHHHHHHTTS-------------------------CCCEEEECSS--EEEEEESCHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CeEEEEEECC--EEEEEECCHHHH
Confidence            469999999987543     35667888555                         4555555554  799999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|...|++..|.|+.|+|.|+++
T Consensus        58 ~~A~~~l~g~~~~g~~l~V~~a~~   81 (92)
T 2dgt_A           58 VEAIRGLDNTEFQGKRMHVQLSTS   81 (92)
T ss_dssp             HHHHHHHTTEEETTEEEEEEESSC
T ss_pred             HHHHHHhCCCeeCCcEEEEEEccC
Confidence            999999999999999999999987

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=98.57  E-value=2.3e-07  Score=68.86  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=60.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-CCCeEEEEeCCHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-SFRRMRVNYESSAAA  117 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-SF~RiiVVF~~~eaA  117 (238)
                      +||||.||+..+-+     +.|+.+|++||+                         +..+...+ +.+-++|.|.+.++|
T Consensus         1 ~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~afV~f~~~~~a   50 (101)
T 2hvz_A            1 MKVYVGNLGTGAGK-----GELERAFSYYGP-------------------------LRTVWIARNPPGFAFVEFEDPRDA   50 (101)
T ss_dssp             CEEEEECCCSSCSH-----HHHHHHHHHHCC-------------------------CSEEEEESSSSSEEEEECSSHHHH
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEeeCCCCEEEEEECCHHHH
Confidence            48999999986544     356678886654                         55555555 478899999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+|...|++..+.|..++|.|++..
T Consensus        51 ~~A~~~l~g~~~~g~~l~V~~a~~~   75 (101)
T 2hvz_A           51 EDAVRGLDGKVICGSRVRVELSTGM   75 (101)
T ss_dssp             HHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred             HHHHHHHCCCeECCcEEEEEEccCC
Confidence            9999999999999999999999873

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.57  E-value=2.3e-07  Score=73.95  Aligned_cols=74  Identities=20%  Similarity=0.243  Sum_probs=57.1

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC-eEEEEeCCHHHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR-RMRVNYESSAAAA  118 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~-RiiVVF~~~eaA~  118 (238)
                      .|||.||+..+=+     +.|+.+|++||+|.                         .+...+.-| +++|.|.+.++|.
T Consensus        27 ~l~V~NL~~~vt~-----~~L~~~Fs~yG~V~-------------------------~v~i~~~~Gf~aFVef~~~~~A~   76 (124)
T 2e5i_A           27 LLSIQNPLYPITV-----DVLYTVCNPVGKVQ-------------------------RIVIFKRNGIQAMVEFESVLCAQ   76 (124)
T ss_dssp             EEEEESCCSCCCH-----HHHHHHHTTTSCEE-------------------------EEEEEESSSEEEEEEESSHHHHH
T ss_pred             EEEEcCcCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEEeCCCCEEEEEECCHHHHH
Confidence            3578999976544     36789999776654                         332222237 6999999999999


Q ss_pred             HHHHHhcCCccCC--cceEEEEeCCCC
Q psy258          119 KARINLHQSVFAS--SKINVYFVQPMT  143 (238)
Q Consensus       119 ~Ar~~L~~~~f~g--~~lrIyFAq~~t  143 (238)
                      .|+..|+|..|.|  ..|+|.||++..
T Consensus        77 ~A~~~LnG~~i~g~~~~l~V~~Ak~~~  103 (124)
T 2e5i_A           77 KAKAALNGADIYAGCCTLKIEYARPTR  103 (124)
T ss_dssp             HHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred             HHHHHhCCCEecCCCeEEEEEEecCCc
Confidence            9999999999987  479999998743

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.57  E-value=3.6e-07  Score=68.11  Aligned_cols=75  Identities=24%  Similarity=0.250  Sum_probs=59.8

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEe
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNY  111 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF  111 (238)
                      -+++|||.||+..+-+     +.|+.+|++||+                         +..+...+.     .+-++|.|
T Consensus        14 ~~~~l~v~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f   63 (105)
T 2dnh_A           14 RDRKLFVGMLNKQQSE-----EDVLRLFQPFGV-------------------------IDECTVLRGPDGSSKGCAFVKF   63 (105)
T ss_dssp             CCCEEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCcCcEEEEEe
Confidence            3579999999986644     456788886655                         444444433     46799999


Q ss_pred             CCHHHHHHHHHHhcCCccCC---cceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFAS---SKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g---~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..+.+   ..|+|.|++.
T Consensus        64 ~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~   96 (105)
T 2dnh_A           64 SSHTEAQAAIHALHGSQTMPGASSSLVVKFADT   96 (105)
T ss_dssp             SSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred             CCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence            99999999999999999888   8999999987

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.57  E-value=1.6e-07  Score=69.26  Aligned_cols=74  Identities=26%  Similarity=0.260  Sum_probs=59.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---------CCCCeEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---------KSFRRMR  108 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---------kSF~Rii  108 (238)
                      .++|||.||+..+-+     +.|+.+|++||+                         +..+...         ++.+-++
T Consensus         5 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~gt~~~~g~af   54 (98)
T 2cpf_A            5 SSGLFIKNLNFSTTE-----ETLKGVFSKVGA-------------------------IKSCTISKKKNKAGVLLSMGFGF   54 (98)
T ss_dssp             CCCEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEEEECTTCCEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCCCcCcccEEE
Confidence            479999999986544     456778886655                         4444443         3446799


Q ss_pred             EEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          109 VNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.|.+.++|.+|...|++..|.|+.|+|.|++.
T Consensus        55 V~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   87 (98)
T 2cpf_A           55 VEYKKPEQAQKALKQLQGHTVDGHKLEVRISER   87 (98)
T ss_dssp             EEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             EEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence            999999999999999999999999999999987

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.56  E-value=3.6e-07  Score=68.94  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=62.9

Q ss_pred             CCCCcEEEecCCCCCCCC-hHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEE
Q psy258           36 QLPKSLIITNLNPDLFKD-DALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVN  110 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~-~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVV  110 (238)
                      ...++|||.||+..+=.. +...+.|+.+|++||+                         +..+...    ++.|-++|.
T Consensus        13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~-------------------------v~~v~i~~~~g~~~G~afV~   67 (105)
T 2nlw_A           13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK-------------------------ITNDFYPEEDGKTKGYIFLE   67 (105)
T ss_dssp             SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSC-------------------------EEEEECCCBTTBSCCEEEEE
T ss_pred             CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCC-------------------------EEEEEeeCCCCCeeeEEEEE
Confidence            456799999999644210 1267788999996655                         4444433    345789999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCc-ceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASS-KINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~-~lrIyFAq~  141 (238)
                      |.+.++|.+|...|++..|.|+ .|+|.++..
T Consensus        68 f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~   99 (105)
T 2nlw_A           68 YASPAHAVDAVKNADGYKLDKQHTFRVNLFTD   99 (105)
T ss_dssp             ECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred             ECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence            9999999999999999999998 999999875

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.56  E-value=1.7e-07  Score=75.61  Aligned_cols=73  Identities=15%  Similarity=0.272  Sum_probs=57.3

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC--eEEEEeCCHHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR--RMRVNYESSAAA  117 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~--RiiVVF~~~eaA  117 (238)
                      .|||.||+..+-+     +.|+.+|++||+|.                         ++...+.-+  +++|.|.+.++|
T Consensus        30 ~I~V~NL~~~vte-----~~L~~lFs~yG~V~-------------------------~V~i~~~~~gfqAFVef~~~~~A   79 (130)
T 3zzy_A           30 RIIVENLFYPVTL-----DVLHQIFSKFGTVL-------------------------KIITFTKNNQFQALLQYADPVSA   79 (130)
T ss_dssp             EEEEESCCSCCCH-----HHHHHHHTTSSCEE-------------------------EEEEEEETTEEEEEEEESCHHHH
T ss_pred             EEEECCCCCCCCH-----HHHHHHHhCcCCEE-------------------------EEEEEcCCCCcEEEEEECCHHHH
Confidence            7889999876544     35778999776654                         333333222  499999999999


Q ss_pred             HHHHHHhcCCccCC--cceEEEEeCCC
Q psy258          118 AKARINLHQSVFAS--SKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g--~~lrIyFAq~~  142 (238)
                      ..|++.|+|..|+|  ..|||.||++.
T Consensus        80 ~~Ai~~LnG~~i~g~~~~LrI~~ak~~  106 (130)
T 3zzy_A           80 QHAKLSLDGQNIYNACCTLRIDFSKLT  106 (130)
T ss_dssp             HHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred             HHHHHHcCCCeecCCCcEEEEEecCCC
Confidence            99999999999988  78999999873

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.55  E-value=1.7e-07  Score=68.34  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=58.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      .++|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.+-++|.|
T Consensus        15 ~~~l~v~nlp~~~t~-----~~l~~~f~~~G~-------------------------v~~v~i~~~~~~~~~~g~afV~f   64 (95)
T 2cqc_A           15 NCCLGVFGLSLYTTE-----RDLREVFSKYGP-------------------------IADVSIVYDQQSRRSRGFAFVYF   64 (95)
T ss_dssp             GGCEEEESCCSSCCH-----HHHHHHHHTTSC-------------------------EEEEEEEECSSSSSEEEEEEEEE
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEEcCCCCCcccEEEEEE
Confidence            359999999986544     356788886654                         44444432      235699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..+.|+.++|.|+++
T Consensus        65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   94 (95)
T 2cqc_A           65 ENVDDAKEAKERANGMELDGRRIRVSGPSS   94 (95)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence            999999999999999999999999999875

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=4.8e-07  Score=65.93  Aligned_cols=72  Identities=18%  Similarity=0.226  Sum_probs=59.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|||.||+..+-+     +.|+.+|++|                         |.+..+...+.  -++|.|.+.++|
T Consensus         9 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~v~~~~~~~~--~afV~f~~~~~a   56 (90)
T 2dnp_A            9 TWKIFVGNVSAACTS-----QELRSLFERR-------------------------GRVIECDVVKD--YAFVHMEKEADA   56 (90)
T ss_dssp             SCCEEEESCCTTCCH-----HHHHHHHHHH-------------------------SCEEEEEECSS--CEEEEESCHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHcC-------------------------CCEEEEEEECC--EEEEEECCHHHH
Confidence            569999999986544     3566778855                         55666666655  799999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|...|++..+.|+.|+|.|++.
T Consensus        57 ~~A~~~l~g~~~~g~~l~v~~a~~   80 (90)
T 2dnp_A           57 KAAIAQLNGKEVKGKRINVELSTK   80 (90)
T ss_dssp             HHHHHHHTTCEETTEECEEEESCC
T ss_pred             HHHHHHhCCCEECCcEEEEEECCC
Confidence            999999999999999999999987

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.54  E-value=3.7e-07  Score=68.75  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=59.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~  114 (238)
                      .++|||.||+..+-+     +.|+.+|++||+                         +..+...+   +.+-++|.|.+.
T Consensus        22 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------v~~~~i~~~~~~~g~afV~f~~~   71 (109)
T 1x4a_A           22 DCRIYVGNLPPDIRT-----KDIEDVFYKYGA-------------------------IRDIDLKNRRGGPPFAFVEFEDP   71 (109)
T ss_dssp             SSEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEECCSSSSSCCEEEEESCH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCcEEEEEECCH
Confidence            469999999986543     456788886655                         44443333   345799999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|...|++..|.|+.|+|.|++.
T Consensus        72 ~~A~~A~~~l~g~~~~g~~l~V~~a~~   98 (109)
T 1x4a_A           72 RDAEDAVYGRDGYDYDGYRLRVEFPRS   98 (109)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             HHHHHHHHHcCCCEECCeEEEEEEccc
Confidence            999999999999999999999999987

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.54  E-value=3e-07  Score=66.05  Aligned_cols=74  Identities=14%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|+|.||+..+-+     +.|+.+|++||+                         +..+...+.      .+-++|.|
T Consensus         6 ~~~l~v~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f   55 (87)
T 3bs9_A            6 HFHVFVGDLSPEITT-----AAIAAAFAPFGR-------------------------ISDARVVKDMATGKSKGYGFVSF   55 (87)
T ss_dssp             CEEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred             ceEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EeEEEEEecCCCCccceEEEEEE
Confidence            359999999986544     456788886654                         444444433      35799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..+.|+.++|.|+++
T Consensus        56 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   85 (87)
T 3bs9_A           56 FNKWDAENAIQQMGGQWLGGRQIRTNWATR   85 (87)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence            999999999999999999999999999986

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=4e-07  Score=67.75  Aligned_cols=75  Identities=11%  Similarity=0.136  Sum_probs=60.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..||||.||+..+-+     +.|+.+|++||                         .+..+...+      +.+-++|.|
T Consensus        13 ~~~l~V~nLp~~~t~-----~~l~~~f~~~G-------------------------~i~~v~i~~~~~~~~~~g~afV~f   62 (103)
T 2dnm_A           13 MITLKVDNLTYRTSP-----DSLRRVFEKYG-------------------------RVGDVYIPREPHTKAPRGFAFVRF   62 (103)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHHTTTS-------------------------CEEEEECCBCSSSCSBCSCEEEEE
T ss_pred             CeEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEeCCCCCCCCeEEEEEE
Confidence            479999999986544     34677888554                         455554443      346799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|...|++..|.|+.|+|.|++..
T Consensus        63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2dnm_A           63 HDRRDAQDAEAAMDGAELDGRELRVQVARYG   93 (103)
T ss_dssp             SSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred             CCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence            9999999999999999999999999999873

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.53  E-value=3.5e-07  Score=66.99  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=60.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEE-EecC------CCCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSF-QYLK------SFRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~f-v~Lk------SF~RiiVV  110 (238)
                      .++|||.||+..+-+     +.|+.+|++||+|.                         .+ ...+      +.+-++|.
T Consensus         5 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~-------------------------~~~~i~~~~~~g~~~g~afV~   54 (96)
T 1x5t_A            5 SSGIFIGNLDPEIDE-----KLLYDTFSAFGVIL-------------------------QTPKIMRDPDTGNSKGYAFIN   54 (96)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHHHTTSCBS-------------------------SCCEECCCTTTCSCCSEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCCee-------------------------EEEEEEEcCCCCCcCeEEEEE
Confidence            469999999986543     45778888776654                         33 2222      35689999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      |.+.++|.+|...|++..+.|+.|+|.|+++..
T Consensus        55 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   87 (96)
T 1x5t_A           55 FASFDASDAAIEAMNGQYLCNRPITVSYAFKKD   87 (96)
T ss_dssp             BSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence            999999999999999999999999999998733

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.53  E-value=3.6e-07  Score=69.66  Aligned_cols=77  Identities=22%  Similarity=0.256  Sum_probs=60.4

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEE
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVN  110 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVV  110 (238)
                      -+.+|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.|-++|.
T Consensus        25 ~~~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~   74 (108)
T 2jrs_A           25 GPMRLYVGSLHFNITE-----DMLRGIFEPFGR-------------------------IESIQLMMDSETGRSKGYGFIT   74 (108)
T ss_dssp             SCEEEEEECCCSSCCH-----HHHHHHHTTTSC-------------------------EEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEEcCCCCccceEEEEE
Confidence            3469999999986544     356788886655                         44444432      24679999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      |.+.++|.+|...|++..+.|+.|+|.|+++.+
T Consensus        75 F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~  107 (108)
T 2jrs_A           75 FSDSECAKKALEQLNGFELAGRPMKVGHVTERT  107 (108)
T ss_dssp             ESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred             ECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence            999999999999999999999999999998743

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.53  E-value=2.4e-07  Score=69.28  Aligned_cols=73  Identities=23%  Similarity=0.342  Sum_probs=58.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-----CCCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-----KSFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-----kSF~RiiVVF~  112 (238)
                      ..+|+|.||+..+-+     +.|+.+|++||                         .+..+...     ++.+-++|.|.
T Consensus        29 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~g~~~g~afV~f~   78 (107)
T 3ulh_A           29 GGKLLVSNLDFGVSD-----ADIQELFAEFG-------------------------TLKKAAVHYDRSGRSLGTADVHFE   78 (107)
T ss_dssp             SEEEEEESCCTTCCH-----HHHHHHHHTTS-------------------------CEEEEEEEECTTSCEEEEEEEEES
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CeEEEEEEECCCCCcceEEEEEEC
Confidence            469999999986544     34667888554                         45554444     33467999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      +.++|.+|...|++..+.|+.|+|.|+.
T Consensus        79 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           79 RKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             CHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            9999999999999999999999999985

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.53  E-value=4.8e-07  Score=66.61  Aligned_cols=79  Identities=16%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeC
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYE  112 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~  112 (238)
                      +-+.+|+|.||+..+-+     +.|+.+|++||++.                      .+.-+..-   ++.+-++|.|.
T Consensus        13 ~~~~~l~v~nLp~~~t~-----~~l~~~F~~~G~v~----------------------~~~~~~~~~~g~~~g~afV~f~   65 (98)
T 2cqp_A           13 PGPTIIKVQNMPFTVSI-----DEILDFFYGYQVIP----------------------GSVCLKYNEKGMPTGEAMVAFE   65 (98)
T ss_dssp             CSSEEEEEESCCTTCCH-----HHHHHHTTTSCCCT----------------------TTCEEEECSSSCEEEEEEEEES
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHHHcCCcc----------------------ceEEEEECCCCCeeeEEEEEEC
Confidence            34579999999976544     45778899887764                      11111111   23466999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..|.|+.++|.|+..
T Consensus        66 ~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   94 (98)
T 2cqp_A           66 SRDEATAAVIDLNDRPIGSRKVKLVLGSG   94 (98)
T ss_dssp             CHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred             CHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence            99999999999999999999999999865

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.53  E-value=2.3e-07  Score=67.86  Aligned_cols=74  Identities=18%  Similarity=0.102  Sum_probs=58.7

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF~  112 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+.     .+-++|.|.
T Consensus        16 ~~~l~v~nlp~~~~~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~   65 (95)
T 2ywk_A           16 DRTVFVGNLEARVRE-----EILYELFLQAGP-------------------------LTKVTICKDREGKPKSFGFVCFK   65 (95)
T ss_dssp             GGEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTSCEEEEEEEEES
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEECCCCCCceEEEEEEC
Confidence            469999999986543     457788886655                         444444332     457999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..|.|+.|+|.|++.
T Consensus        66 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~   94 (95)
T 2ywk_A           66 HPESVSYAIALLNGIRLYGRPINVSGPSS   94 (95)
T ss_dssp             STHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence            99999999999999999999999999864

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.52  E-value=5.9e-07  Score=67.07  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=58.5

Q ss_pred             CCcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      .++|||.||+. .+-+     +.|+.+|++||+                         +..+..  +-|-++|.|.+.++
T Consensus        22 ~~~l~V~nLp~~~~t~-----~~L~~~F~~~G~-------------------------v~~v~i--~~g~afV~f~~~~~   69 (97)
T 2xnq_A           22 KSRLFIGNLPLKNVSK-----EDLFRIFSPYGH-------------------------IMQINI--KNAFGFIQFDNPQS   69 (97)
T ss_dssp             TCEEEEESCCSSCCCH-----HHHHHHHGGGSC-------------------------EEEEEE--CSSEEEEEESSHHH
T ss_pred             CCEEEEeCCCcccCCH-----HHHHHHHHhcCC-------------------------EEEEEE--eCCEEEEEECCHHH
Confidence            46999999997 6544     356778886655                         444444  25779999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|...|++..+.|+.++|.|++.
T Consensus        70 A~~Ai~~l~g~~~~g~~l~V~~a~~   94 (97)
T 2xnq_A           70 VRDAIEXESQEMNFGKKLILEVSSS   94 (97)
T ss_dssp             HHHHHHHHTTSEETTEECEEEECCC
T ss_pred             HHHHHHHcCCCEECCEEEEEEecCC
Confidence            9999999999999999999999876

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=3.2e-07  Score=72.78  Aligned_cols=73  Identities=19%  Similarity=0.231  Sum_probs=59.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      ++|||.||+..+-+     +.|+.+|++||+                         +..+..++..+.++|.|.+.++|.
T Consensus        32 ~~LfVgNLp~~vte-----~dL~~lF~~fG~-------------------------V~~v~i~~~kG~AFVeF~~~e~A~   81 (119)
T 2ad9_A           32 RVIHIRKLPIDVTE-----GEVISLGLPFGK-------------------------VTNLLMLKGKNQAFIEMNTEEAAN   81 (119)
T ss_dssp             SEEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------CCEEEEEGGGTEEEEECSCHHHHH
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEeCCCCEEEEEECCHHHHH
Confidence            58999999987544     356688886655                         556666677788999999999999


Q ss_pred             HHHHHhcC--CccCCcceEEEEeCC
Q psy258          119 KARINLHQ--SVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~--~~f~g~~lrIyFAq~  141 (238)
                      +|...+++  ..+.|+.|+|.||+.
T Consensus        82 ~Ai~~l~~~~~~l~Gr~l~V~~a~~  106 (119)
T 2ad9_A           82 TMVNYYTSVTPVLRGQPIYIQFSNH  106 (119)
T ss_dssp             HHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred             HHHHHhccCCceECCeEEEEEEccC
Confidence            99999875  579999999999987

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=1.6e-07  Score=73.12  Aligned_cols=74  Identities=19%  Similarity=0.230  Sum_probs=60.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+-+     +.|+.+|++|                         |.+..+..++..|-++|.|.+.++|
T Consensus        16 ~~~LfV~nLp~~vte-----~dL~~lF~~f-------------------------G~V~~v~i~~~kGfaFVeF~~~~~A   65 (105)
T 1sjq_A           16 SRVIHIRKLPIDVTE-----GEVISLGLPF-------------------------GKVTNLLMLKGKNQAFIEMNTEEAA   65 (105)
T ss_dssp             CCEEEECSCCTTSCH-----HHHHHHHHHH-------------------------CCEEEEEEETTTTEEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEEcCCCEEEEEECCHHHH
Confidence            369999999987644     3456788855                         5566677777788999999999999


Q ss_pred             HHHHHHhcC--CccCCcceEEEEeCC
Q psy258          118 AKARINLHQ--SVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~--~~f~g~~lrIyFAq~  141 (238)
                      ..|...+++  ..+.|++|+|.||+.
T Consensus        66 ~~Ai~~l~~~~~~l~Gr~l~V~~A~~   91 (105)
T 1sjq_A           66 NTMVNYYTSVTPVLRGQPIYIQFSNH   91 (105)
T ss_dssp             HHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred             HHHHHHhccCCceECCEEEEEEEcCC
Confidence            999998874  679999999999987

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.52  E-value=4.4e-07  Score=68.64  Aligned_cols=75  Identities=15%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|||.||+..+-+     +.|+.+|++|                         |++..+...+. +-++|.|.+.++|
T Consensus        15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------G~i~~~~i~~~-g~afV~f~~~~~a   63 (108)
T 1x4c_A           15 ENRVVVSGLPPSGSW-----QDLKDHMREA-------------------------GDVCYADVYRD-GTGVVEFVRKEDM   63 (108)
T ss_dssp             CCEEEEESCCSSCCH-----HHHHHHHGGG-------------------------SCEEEEEEETT-TEEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEeEEEEecC-CEEEEEECCHHHH
Confidence            469999999987644     3566788855                         55556655555 8999999999999


Q ss_pred             HHHHHHhcCCccCC-----cceEEEEeCCCC
Q psy258          118 AKARINLHQSVFAS-----SKINVYFVQPMT  143 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g-----~~lrIyFAq~~t  143 (238)
                      ..|...|++..|.|     ..|+|.++++..
T Consensus        64 ~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~   94 (108)
T 1x4c_A           64 TYAVRKLDNTKFRSHEGETAYIRVKVDGPRS   94 (108)
T ss_dssp             HHHHHHSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred             HHHHHHHCcCCccCCcCcceEEEEEeCCCCC
Confidence            99999999999998     899999998733

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=98.52  E-value=4.1e-07  Score=69.45  Aligned_cols=73  Identities=23%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ...|||.||+..+=+     +.|+.||.||                         |++.++....+-|-++|-|.+.++|
T Consensus         7 ~~wL~VgNL~~~~te-----~~L~~lF~q~-------------------------G~V~~~~l~~~kGfaFVey~~~~eA   56 (89)
T 2wbr_A            7 SSWLLLKNLTAQIDG-----PTLRTLCMQH-------------------------GPLVSFHPYLNQGIALCKYTTREEA   56 (89)
T ss_dssp             CCEEEEECCCTTCCC-----HHHHHHHHHH-------------------------SCEEEEEEETTTTEEEEEESSHHHH
T ss_pred             cceEEEeCCCccCCH-----HHHHHHHHhh-------------------------CCEEEEEEcCCCcEEEEEECCHHHH
Confidence            468999999988766     4566788855                         5566677677899999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeC
Q psy258          118 AKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      ..|...|++..+.|+.|++.||.
T Consensus        57 ~~Ai~~Ln~~~l~gr~I~V~~A~   79 (89)
T 2wbr_A           57 NKAQMALNNCVLANTTIFAESPS   79 (89)
T ss_dssp             HHHHHHHTTEEETTEEEEEECCC
T ss_pred             HHHHHHhcCCEECCcEEEEEECC
Confidence            99999999999999999999984

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=3.1e-07  Score=68.22  Aligned_cols=73  Identities=21%  Similarity=0.269  Sum_probs=58.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      +||||.||+..+-+     +.|+.+|++||+|                         ..+...+.      .|-++|.|.
T Consensus         9 ~~l~V~nlp~~~~~-----~~l~~~f~~~G~i-------------------------~~~~i~~~~~~g~~~g~afV~f~   58 (104)
T 1p1t_A            9 RSVFVGNIPYEATE-----EQLKDIFSEVGPV-------------------------VSFRLVYDRETGKPKGYGFCEYQ   58 (104)
T ss_dssp             SCEEEESCCTTSCH-----HHHHHHHHTTSCC-------------------------SEEEEEEETTTTEEEEEEEEECS
T ss_pred             cEEEEeCCCCcCCH-----HHHHHHHHhcCCe-------------------------eEEEEEeCCCCCccceEEEEEEC
Confidence            69999999976543     4577888866554                         44444322      467999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..|.|+.++|.|+.+
T Consensus        59 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   87 (104)
T 1p1t_A           59 DQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             CHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             CHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence            99999999999999999999999999987

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.51  E-value=7.8e-07  Score=68.58  Aligned_cols=74  Identities=22%  Similarity=0.299  Sum_probs=60.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      .++|||.||+..+-+     +.|+.+|++||+                         +..+...+     +.|-++|.|.
T Consensus        35 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------v~~v~i~~~~~g~~~g~afV~f~   84 (124)
T 2kt5_A           35 GAKLLVSNLDFGVSD-----ADIQELFAEFGT-------------------------LKKAAVDYDRSGRSLGTADVHFE   84 (124)
T ss_dssp             CEEEEEESCCSSCCH-----HHHHHHHHTTSC-------------------------CSEEEEECCSSSSCCSEEEEEES
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEECCCCCEeeEEEEEEC
Confidence            359999999986544     356788886655                         44444443     5678999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..+.|+.|+|.||..
T Consensus        85 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  113 (124)
T 2kt5_A           85 RRADALKAMKQYKGVPLDGRPMDIQLVAS  113 (124)
T ss_dssp             SHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred             CHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence            99999999999999999999999999987

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=98.51  E-value=4.7e-07  Score=67.05  Aligned_cols=83  Identities=16%  Similarity=0.166  Sum_probs=59.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~  113 (238)
                      .++|||.||+..+-+     +.|+.+|++||++..-.               ....+.+.+..=    ++.|-++|.|.+
T Consensus        13 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~~~~---------------~~~~~~v~i~~~~~~g~~~G~afV~f~~   72 (99)
T 2la6_A           13 NNTIFVQGLGENVTI-----ESVADYFKQIGIIKTNK---------------KTGQPMINLYTDRETGKLKGEATVSFDD   72 (99)
T ss_dssp             CSEEEEECCCSSCCH-----HHHHHHHTTTSCBCEET---------------TTTEESEEEEECTTTCSEEEEEEEEBSS
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHhCCEeecc---------------ccccccEEEEecCCCCCeeeEEEEEECC
Confidence            469999999987544     45778899777654000               000001223322    224579999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .++|.+|...|++..|.|+.++|.||+
T Consensus        73 ~~~a~~Ai~~l~g~~~~g~~l~V~~A~   99 (99)
T 2la6_A           73 PPSAKAAIDWFDGKEFSGNPIKVSFAT   99 (99)
T ss_dssp             HHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred             HHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence            999999999999999999999999975

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.51  E-value=4.2e-07  Score=67.85  Aligned_cols=73  Identities=19%  Similarity=0.200  Sum_probs=58.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .||||.||+..+-+     +.|+.+|++||+                         +..+...+      +.|-++|.|.
T Consensus        24 ~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f~   73 (106)
T 1p27_B           24 WILFVTGVHEEATE-----EDIHDKFAEYGE-------------------------IKNIHLNLDRRTGYLKGYTLVEYE   73 (106)
T ss_dssp             EEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTSSEEEEEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHhccCC-------------------------eEEEEEEecCCCCceeeEEEEEEC
Confidence            48999999986544     356788886655                         44444432      2466999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..|.|..++|.||++
T Consensus        74 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  102 (106)
T 1p27_B           74 TYKEAQAAMEGLNGQDLMGQPISVDWCFV  102 (106)
T ss_dssp             CHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             CHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence            99999999999999999999999999976

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.51  E-value=8.4e-07  Score=66.07  Aligned_cols=76  Identities=14%  Similarity=0.031  Sum_probs=60.4

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRV  109 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiV  109 (238)
                      +-..+|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.+-++|
T Consensus        13 ~~~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV   62 (105)
T 1x5u_A           13 NQDATVYVGGLDEKVSE-----PLLWELFLQAGP-------------------------VVNTHMPKDRVTGQHQGYGFV   62 (105)
T ss_dssp             CTTTEEEEECCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEECCBCSSSCSBCSCEEE
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCcCCcEEEE
Confidence            33579999999986543     346788885654                         54554444      3357999


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|.+.++|.+|...|++..|.|+.|+|.|+++
T Consensus        63 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   94 (105)
T 1x5u_A           63 EFLSEEDADYAIKIMDMIKLYGKPIRVNKASA   94 (105)
T ss_dssp             EESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred             EECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence            99999999999999999999999999999987

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.51  E-value=8.1e-07  Score=70.64  Aligned_cols=75  Identities=19%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-CCeEEEEeCCHH
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-FRRMRVNYESSA  115 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-F~RiiVVF~~~e  115 (238)
                      -..+|||.||+..+-+ +    .|+.+|++|                         |.+..+...+. -|-++|.|.+.+
T Consensus        72 ~~~~l~V~nl~~~~t~-~----~l~~~F~~~-------------------------G~i~~v~i~~~~~g~afV~f~~~~  121 (150)
T 2i2y_A           72 LDCKVYVGNLGNNGNK-T----ELERAFGYY-------------------------GPLRSVWVARNPPGFAFVEFEDPR  121 (150)
T ss_dssp             TSCEEEEESCCSCCSC-H----HHHHHHHHH-------------------------SCEEEEEECSSSCSEEEEEESSHH
T ss_pred             CCCEEEEeCCCCCCCH-H----HHHHHHHhh-------------------------CCEEEEEEeeCCCcEEEEEECCHH
Confidence            3469999999988755 3    456788855                         55556655554 688999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|..|...|++..+.|+.|+|.|+++
T Consensus       122 ~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A          122 DAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             HHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             HHHHHHHHcCCCEECCeEEEEEEcCC
Confidence            99999999999999999999999876

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.51  E-value=5.2e-07  Score=68.62  Aligned_cols=75  Identities=29%  Similarity=0.360  Sum_probs=60.6

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeC
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYE  112 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~  112 (238)
                      -..+|||.||+..+-+     +.|+.+|++||+|.                         .+...    ++.|-++|.|.
T Consensus        28 ~~~~l~V~nLp~~~te-----~~l~~~F~~~G~i~-------------------------~v~i~~~~~~~kg~afV~f~   77 (109)
T 2err_A           28 QPKRLHVSNIPFRFRD-----PDLRQMFGQFGKIL-------------------------DVEIIFNERGSKGFGFVTFE   77 (109)
T ss_dssp             CCCEEEEESCCTTCCH-----HHHHHHGGGTCCCS-------------------------CEEECCBTTBCTTEEEEECC
T ss_pred             CCCEEEEECCCCcCCH-----HHHHHHHHhcCCEE-------------------------EEEEEECCCCCceEEEEEEC
Confidence            3569999999986544     45678899777654                         33333    24578999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..|.|+.++|.|+++
T Consensus        78 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  106 (109)
T 2err_A           78 NSADADRAREKLHGTVVEGRKIEVNNATA  106 (109)
T ss_dssp             CSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            99999999999999999999999999986

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=1.5e-07  Score=69.86  Aligned_cols=77  Identities=18%  Similarity=0.141  Sum_probs=59.2

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      -.++|||.||+..+-+     +.|+.+|++||+|.                       ++.-..-++.+-++|.|.+.++
T Consensus        14 ~~~~l~V~nLp~~~t~-----~~l~~~F~~~g~v~-----------------------~~~~~~g~~~g~afV~f~~~~~   65 (101)
T 2fc9_A           14 ESKTLVLSNLSYSATE-----ETLQEVFEKATFIK-----------------------VPQNQNGKSKGYAFIEFASFED   65 (101)
T ss_dssp             CCSEEEEESCCTTCCH-----HHHHHHCSSCSEEE-----------------------CCBCSSSCBCSEEEEECSSHHH
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHhCCEEE-----------------------EEECCCCCEeeEEEEEECCHHH
Confidence            3579999999987544     35678888776542                       0000112345789999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|...|++..|.|+.|+|.|+++
T Consensus        66 A~~A~~~l~g~~~~g~~l~v~~a~~   90 (101)
T 2fc9_A           66 AKEALNSCNKREIEGRAIRLELQGP   90 (101)
T ss_dssp             HHHHHHHTSSEEETTEEEEEEECSS
T ss_pred             HHHHHHHhCCCEeCCeEEEEEEcCC
Confidence            9999999999999999999999987

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.51  E-value=1.3e-07  Score=72.13  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---------CCCeEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---------SFRRMR  108 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---------SF~Rii  108 (238)
                      .++|||.||+..+-+ ++|+. ++.+|++||+                         +..+...+         +.+-++
T Consensus        15 ~~~l~V~nLp~~~~~-~~l~~-~~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~~~~G~af   67 (111)
T 2cpi_A           15 KNLVFVVGLSQRLAD-PEVLK-RPEYFGKFGK-------------------------IHKVVINNSTSYAGSQGPSASAY   67 (111)
T ss_dssp             SSCEEEEEECTTTCC-HHHHH-STTTTTTTSC-------------------------EEEEEEECCSSCCSSSCCCEEEE
T ss_pred             CCEEEEECCCCCCCH-HHHHH-HHHHhhccCC-------------------------EEEEEEecCCCcCccCCCCeEEE
Confidence            369999999987766 44431 3478886655                         54544443         235899


Q ss_pred             EEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          109 VNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.|.+.++|.+|...|++..|.|+.|+|.||++
T Consensus        68 V~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~  100 (111)
T 2cpi_A           68 VTYIRSEDALRAIQCVNNVVVDGRTLKASLGTT  100 (111)
T ss_dssp             EEESSHHHHHHHHHHHTTEEETTEEEEEESCCC
T ss_pred             EEECcHHHHHHHHHHhCCCEECCEEEEEEeccc
Confidence            999999999999999999999999999999987

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.50  E-value=7.9e-07  Score=67.42  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCC
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYES  113 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~  113 (238)
                      ..+||||.||+..+-.     +.|+.+|++||.                         +..+...   ++.|-++|.|.+
T Consensus         7 ~~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------v~~v~i~~~~~~~g~afV~f~~   56 (115)
T 3lqv_A            7 VNRILYIRNLPYKITA-----EEMYDIFGKYGP-------------------------IRQIRVGNTPETRGTAYVVYED   56 (115)
T ss_dssp             CCSEEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEECSTTTTTCEEEEESS
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEeeCCCCCcEEEEEECC
Confidence            3469999999976544     346788886655                         4444443   345689999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|.+|...|++..+.|..++|.|+++
T Consensus        57 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~   84 (115)
T 3lqv_A           57 IFDAKNAVDHLSGFNVSNRYLVVLYYNA   84 (115)
T ss_dssp             HHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred             HHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence            9999999999999999999999999876

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.50  E-value=1.3e-07  Score=69.54  Aligned_cols=76  Identities=14%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|||.||+..+-+     +.|+.+|++||++.                       .+ ...-++.|-++|.|.+.++|
T Consensus        16 ~~~l~V~nL~~~~t~-----~~l~~~F~~~g~v~-----------------------~~-~~~~~~~g~afV~f~~~~~a   66 (96)
T 1fjc_A           16 ARTLLAKNLSFNITE-----DELKEVFEDALEIR-----------------------LV-SQDGKSKGIAYIEFKSEADA   66 (96)
T ss_dssp             GGEEEEESCCSSCCH-----HHHHHHHCSEEEEC-----------------------CE-EETTEEEEEEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHhhCCcEE-----------------------Ee-CCCCCcceEEEEEECCHHHH
Confidence            469999999987644     35678899777654                       11 22223456799999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      ..|...|++..+.|..|+|.|+.+.
T Consensus        67 ~~A~~~l~g~~~~g~~l~v~~a~~~   91 (96)
T 1fjc_A           67 EKNLEEKQGAEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             HHHHHHTTEEEETTEEEEEEECSSS
T ss_pred             HHHHHHhCCCEECCeEEEEEEcCCC
Confidence            9999999999999999999999773

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=1.2e-06  Score=64.61  Aligned_cols=74  Identities=11%  Similarity=0.177  Sum_probs=59.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      .++|||.||+..+-+     +.|+.+|++|                         |.+..+...+      +.+-++|.|
T Consensus        10 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f   59 (99)
T 2dgs_A           10 SNKIFVGGIPHNCGE-----TELREYFKKF-------------------------GVVTEVVMIYDAEKQRPRGFGFITF   59 (99)
T ss_dssp             CCEEEEESCCSSCCH-----HHHHHHHSSS-------------------------SCEEEEEECCCTTTCSCCSEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEeCCCCCCCCceEEEEE
Confidence            469999999986544     3467788855                         5555555554      346799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|.. +++..|.|+.|+|.|+++.
T Consensus        60 ~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~   89 (99)
T 2dgs_A           60 EDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR   89 (99)
T ss_dssp             SSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred             CCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence            99999999998 9999999999999999873

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.50  E-value=3.6e-07  Score=67.82  Aligned_cols=79  Identities=19%  Similarity=0.127  Sum_probs=62.0

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      -+.+|||.||+..+-+     +.|+.+|++||.+.                   . --+..-..-++.+-++|.|.+.++
T Consensus        16 ~~~~l~V~nLp~~~t~-----~~l~~~F~~~G~v~-------------------~-~~~~~~~~g~~~g~afV~f~~~~~   70 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSV-----AELKVAISELFAKN-------------------D-LAVVDVRTGTNRKFGYVDFESAED   70 (101)
T ss_dssp             CSEEEEEECCCTTSCH-----HHHHHHHHHHHHHH-------------------T-CCCCEEEEETTTTEEEEEESSHHH
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHHhCCcc-------------------e-EEEecCCCCCcCcEEEEEECCHHH
Confidence            3569999999986544     45778899887654                   1 122333344667789999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|.. |++..+.|+.|+|.++++
T Consensus        71 a~~A~~-l~g~~~~g~~l~V~~a~~   94 (101)
T 1fj7_A           71 LEKALE-LTGLKVFGNEIKLEKPKG   94 (101)
T ss_dssp             HHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred             HHHHHh-cCCcEECCcEEEEEEcCC
Confidence            999998 999999999999999987

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=98.50  E-value=1.2e-07  Score=69.46  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=58.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~  113 (238)
                      +++|||.||+..+-+     +.|+.+|++||++.                      .+ .+..-    ++.+-++|.|.+
T Consensus        15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~i~----------------------~~-~~~~~~~~g~~~g~afV~f~~   66 (95)
T 2ek1_A           15 PTVIKVQNMPFTVSI-----DEILDFFYGYQVIP----------------------GS-VCLKYNEKGMPTGEAMVAFES   66 (95)
T ss_dssp             CEEEEEECCCTTCCH-----HHHHHHTTTSCBCT----------------------TC-CEEEECTTSCEEEEEEEEESS
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCCcc----------------------ce-EEEEeCCCCCEeeEEEEEECC
Confidence            579999999976544     45778899888765                      11 11111    223569999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|.+|...|++..|.|+.++|.++.+
T Consensus        67 ~~~a~~Ai~~l~g~~~~gr~l~v~~a~s   94 (95)
T 2ek1_A           67 RDEATAAVIDLNDRPIGSRKVKLSGPSS   94 (95)
T ss_dssp             HHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred             HHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence            9999999999999999999999998764

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=98.49  E-value=3.9e-07  Score=70.18  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=59.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF  111 (238)
                      +.+|||.||+..+-+     +.|+.+|++||+                         +.++...      ++.|-++|.|
T Consensus         6 ~~~lfV~nL~~~~te-----~~L~~~F~~~G~-------------------------i~~v~i~~d~~tg~~rG~aFV~f   55 (110)
T 3s8s_A            6 LKEVTFARLNDNVRE-----TFLKDMCRKYGE-------------------------VEEVEILLHPRTRKHLGLARVLF   55 (110)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CcEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEECCCCCceeeEEEEEE
Confidence            469999999986644     356678886655                         4444433      3445699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..+.|+.|+|.++..
T Consensus        56 ~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~   85 (110)
T 3s8s_A           56 TSTRGAKETVKNLHLTSVMGNIIHAQLDIK   85 (110)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            999999999999999999999999999865

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.49  E-value=8.1e-07  Score=66.65  Aligned_cols=75  Identities=21%  Similarity=0.212  Sum_probs=60.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++|                         |.+..+...      ++.+-++|.|
T Consensus        15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~g~~~g~afV~f   64 (111)
T 1x4h_A           15 GKTVFIRNLSFDSEE-----EALGEVLQQF-------------------------GDLKYVRVVLHPDTEHSKGCAFAQF   64 (111)
T ss_dssp             CCCEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCBCSSSCCBCSEEEEEE
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEecCCCCCCccEEEEEE
Confidence            469999999986544     3567788855                         555555554      3456799999


Q ss_pred             CCHHHHHHHHHHhc------CCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLH------QSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~------~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|+..++      +..+.|+.|+|.|+.+.
T Consensus        65 ~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~  101 (111)
T 1x4h_A           65 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR  101 (111)
T ss_dssp             SSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred             CCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence            99999999999999      88999999999999873

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=98.49  E-value=5.2e-07  Score=66.77  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=58.7

Q ss_pred             CCcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      .++|||.||+. .+-+     +.|+.+|++||+|.                         .+...  -+-++|.|.+.++
T Consensus        10 ~~~l~V~nlp~~~~t~-----~~l~~~F~~~G~v~-------------------------~v~i~--~g~afV~f~~~~~   57 (96)
T 2kvi_A           10 KSRLFIGNLPLKNVSK-----EDLFRIFSPYGHIM-------------------------QINIK--NAFGFIQFDNPQS   57 (96)
T ss_dssp             CEEEEEESSTTSCCCH-----HHHHHHHTTTCCCC-------------------------EEEEE--TTEEEEEESCHHH
T ss_pred             CCEEEEeCCCcccCCH-----HHHHHHHHhcCCEE-------------------------EEEEe--CCEEEEEECCHHH
Confidence            46999999997 5544     45678888776654                         33332  5779999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |..|...|++..+.|+.++|.|++.
T Consensus        58 A~~A~~~l~g~~~~g~~l~V~~a~~   82 (96)
T 2kvi_A           58 VRDAIECESQEMNFGKKLILEVSSS   82 (96)
T ss_dssp             HHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred             HHHHHHHcCCCeeCCcEEEEEEcCc
Confidence            9999999999999999999999976

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.49  E-value=6.6e-07  Score=67.33  Aligned_cols=73  Identities=18%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      .||||.||+..+-+     +.|+.+|++|                         |.+..+...+.      .|-++|.|.
T Consensus        27 ~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f~   76 (110)
T 1oo0_B           27 WILFVTSIHEEAQE-----DEIQEKFCDY-------------------------GEIKNIHLNLDRRTGFSKGYALVEYE   76 (110)
T ss_dssp             EEEEEESCCTTCCH-----HHHHHHHGGG-------------------------SCEEEEECCBCTTTSSBCSEEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEEecCCCCCcceEEEEEEC
Confidence            48999999986544     3467888855                         55555555433      467999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|..|...|++..+.|..++|.|+++
T Consensus        77 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  105 (110)
T 1oo0_B           77 THKQALAAKEALNGAEIMGQTIQVDWCFV  105 (110)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             CHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence            99999999999999999999999999976

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.49  E-value=9.6e-07  Score=65.88  Aligned_cols=74  Identities=23%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+..++      +.+-++|.|
T Consensus        13 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f   62 (106)
T 2dgp_A           13 AIKLFIGQIPRNLDE-----KDLKPLFEEFGK-------------------------IYELTVLKDRFTGMHKGCAFLTY   62 (106)
T ss_dssp             CEEEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------CCEEECCCCSSSCSCCSEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eeEEEEEecCCCCCcceEEEEEE
Confidence            469999999976544     356788886655                         44444444      456799999


Q ss_pred             CCHHHHHHHHHHhcCCcc---CCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVF---ASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f---~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..+   .+..|+|.|++.
T Consensus        63 ~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~   95 (106)
T 2dgp_A           63 CERESALKAQSALHEQKTLPGMNRPIQVKPADS   95 (106)
T ss_dssp             SSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred             CCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence            999999999999999876   789999999987

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.48  E-value=5.3e-07  Score=66.85  Aligned_cols=74  Identities=20%  Similarity=0.234  Sum_probs=59.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      .++|||.||+..+-+     +.|+.+|++||+|.                         .+...+      +.+-++|.|
T Consensus        12 ~~~l~V~nLp~~~t~-----~~l~~~f~~~G~i~-------------------------~v~i~~~~~~~~~~g~afV~f   61 (102)
T 2cqb_A           12 KRVLYVGGLAEEVDD-----KVLHAAFIPFGDIT-------------------------DIQIPLDYETEKHRGFAFVEF   61 (102)
T ss_dssp             CSCEEEESCCSSCCH-----HHHHHHHTTTSCCC-------------------------CEECCCCSSSCCCSSEEEECC
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHhhccCCEE-------------------------EEEEEecCCCCCcceEEEEEE
Confidence            469999999986543     45778888666643                         343333      456799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..|.|+.|+|.|+++
T Consensus        62 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~   91 (102)
T 2cqb_A           62 ELAEDAAAAIDNMNESELFGRTIRVNLAKP   91 (102)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence            999999999999999999999999999987

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=5.6e-07  Score=66.36  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=59.9

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCce-EEEecCC------CCeEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK-SFQYLKS------FRRMR  108 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv-~fv~LkS------F~Rii  108 (238)
                      .-+.+|||.||+..+-+     +.|+.+|++|                         |.+. .+...+.      .+-++
T Consensus         7 ~~~~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------G~i~~~v~i~~~~~~g~~~g~af   56 (99)
T 2div_A            7 GMAASLWMGDLEPYMDE-----NFISRAFATM-------------------------GETVMSVKIIRNRLTGIPAGYCF   56 (99)
T ss_dssp             SSSSEEEECSCCTTCCH-----HHHHHHHHHT-------------------------TCCCCEEEEEECSSSCCEEEEEE
T ss_pred             CCccEEEEeCCCCCCCH-----HHHHHHHHHh-------------------------CCcceEEEEeecCCCCCcCCEEE
Confidence            44679999999986544     4566778855                         5555 5544433      25699


Q ss_pred             EEeCCHHHHHHHHHHhcCCccCCcc----eEEEEeCC
Q psy258          109 VNYESSAAAAKARINLHQSVFASSK----INVYFVQP  141 (238)
Q Consensus       109 VVF~~~eaA~~Ar~~L~~~~f~g~~----lrIyFAq~  141 (238)
                      |.|.+.++|.+|...|++..+.|..    ++|.||+.
T Consensus        57 V~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~   93 (99)
T 2div_A           57 VEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY   93 (99)
T ss_dssp             EECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred             EEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence            9999999999999999999999988    99999987

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=98.46  E-value=5.9e-07  Score=68.93  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=58.2

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCCH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYESS  114 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~~  114 (238)
                      ++|||.||+..+-+     +.|+.+|++||+                         +.++...+    +.|-++|.|.+.
T Consensus         6 ~~lfV~nLp~~~te-----~~L~~~F~~~G~-------------------------v~~v~i~~d~~~~kg~afV~f~~~   55 (115)
T 4f25_A            6 GNIFIKNLDKSIDN-----KALYDTFSAFGN-------------------------ILSCKVVCDENGSKGYGFVHFETQ   55 (115)
T ss_dssp             CEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEEETTEEEEEEEEEESCH
T ss_pred             CEEEECCCCCCCCH-----HHHHHHHhccCC-------------------------EEEEEEeecCCCCCceEEEEECCH
Confidence            58999999986543     457788886655                         44443332    234699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|...|++..+.|+.|+|.++++
T Consensus        56 ~~A~~Ai~~l~~~~~~g~~i~V~~a~~   82 (115)
T 4f25_A           56 EAAERAIEKMNGMLLNDRKVFVGRFKS   82 (115)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            999999999999999999999999876

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.46  E-value=7.5e-07  Score=68.57  Aligned_cols=75  Identities=19%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      .||||.||+..+-+     +.|+.+|++|                         |.+..+...+.      .+-++|.|.
T Consensus        23 ~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f~   72 (126)
T 3ex7_B           23 WILFVTGVHEEATE-----EDIHDKFAEY-------------------------GEIKNIHLNLDRRTGYLKGYTLVEYE   72 (126)
T ss_dssp             EEEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCBCTTTSSBCSCEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEecCCCCccceEEEEEEC
Confidence            49999999976533     3566778855                         55555554433      568999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      +.++|..|...|++..|.|..|+|.|+++..
T Consensus        73 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  103 (126)
T 3ex7_B           73 TYKEAQAAMEGLNGQDLMGQPISVDWCFVRG  103 (126)
T ss_dssp             SHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred             CHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence            9999999999999999999999999997733

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.46  E-value=6.2e-07  Score=67.00  Aligned_cols=72  Identities=26%  Similarity=0.419  Sum_probs=59.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+=+     +.|+.+|++|                         |.+..+...+.  -++|.|.+.++|
T Consensus        11 ~~~l~V~nl~~~~t~-----~~l~~~F~~~-------------------------G~i~~v~~~~~--~afV~f~~~~~a   58 (103)
T 2dgu_A           11 VKVLFVRNLANTVTE-----EILEKAFSQF-------------------------GKLERVKKLKD--YAFIHFDERDGA   58 (103)
T ss_dssp             CCCEEEECCCTTCCH-----HHHHHHHHHH-------------------------SCEEEEEECSS--CEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEECC--EEEEEeCCHHHH
Confidence            369999999986533     4566788855                         55556665554  699999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|...|++..|.|+.|+|.|+++
T Consensus        59 ~~A~~~l~g~~~~g~~l~v~~a~~   82 (103)
T 2dgu_A           59 VKAMEEMNGKDLEGENIEIVFAKP   82 (103)
T ss_dssp             HHHHHHHTTEEETTEEEEEEECCC
T ss_pred             HHHHHHHCCCccCCCEEEEEEcCC
Confidence            999999999999999999999987

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=98.46  E-value=4.3e-07  Score=68.09  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=61.2

Q ss_pred             CCCCcEEEecCCC--CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeE
Q psy258           36 QLPKSLIITNLNP--DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRM  107 (238)
Q Consensus        36 ~~p~TLiitnL~~--~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~Ri  107 (238)
                      .+.+||+|.|||.  .... +...+.|+.+|++||+                         +.++...      ++.|-+
T Consensus         4 ~~~~~vfV~nLp~v~~~~~-~~~~~~L~~~F~~~G~-------------------------i~~v~i~~d~~tg~~kG~a   57 (100)
T 3ns6_A            4 GSDQYIVVNGAPVIPSAKV-PVLKKALTSLFSKAGK-------------------------VVNMEFPIDEATGKTKGFL   57 (100)
T ss_dssp             CGGGEEEEESCCCCBGGGH-HHHHHHHHHHHHTTSC-------------------------EEEEECCEETTTTEECSEE
T ss_pred             CcCcEEEEeCCCcCChHHH-HHHHHHHHHHHHhcCC-------------------------EeEEEEEEcCCCCccceEE
Confidence            4567999999984  1111 3456678888886654                         4444433      345779


Q ss_pred             EEEeCCHHHHHHHHHHhcCCccCC-cceEEEEeCC
Q psy258          108 RVNYESSAAAAKARINLHQSVFAS-SKINVYFVQP  141 (238)
Q Consensus       108 iVVF~~~eaA~~Ar~~L~~~~f~g-~~lrIyFAq~  141 (238)
                      +|.|.+.++|.+|...|++..|.| +.|+|.++++
T Consensus        58 fV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~   92 (100)
T 3ns6_A           58 FVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD   92 (100)
T ss_dssp             EEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred             EEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence            999999999999999999999999 9999999865

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.46  E-value=6.6e-07  Score=68.01  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=58.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+|                         ..+...+.      .+-++|.|
T Consensus        25 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i-------------------------~~v~i~~~~~~g~~~g~afV~f   74 (115)
T 2cpz_A           25 GANLFIYHLPQEFGD-----QDLLQMFMPFGNV-------------------------VSAKVFIDKQTNLSKCFGFVSY   74 (115)
T ss_dssp             TCCEEEESCCSSCCH-----HHHHHHHGGGSCC-------------------------SEEEEEECSSSCSEEEEEEEEC
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHhcCCe-------------------------EEEEEEECCCCCCcCccEEEEE
Confidence            369999999986544     4567888866554                         44433332      24599999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..|.|..|+|.|+++
T Consensus        75 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  104 (115)
T 2cpz_A           75 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRS  104 (115)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            999999999999999999999999999987

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=98.46  E-value=3.8e-07  Score=64.01  Aligned_cols=69  Identities=16%  Similarity=0.191  Sum_probs=53.4

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~~  113 (238)
                      +|+|.|||..+-+     +.|+.+|++||++.                         .+...      ++.|-++|.|.+
T Consensus         1 ~l~v~nlp~~~t~-----~~l~~~F~~~G~i~-------------------------~v~i~~~~~~~~~~g~afV~f~~   50 (75)
T 2mss_A            1 KIFVGGLSVNTTV-----EDVKHYFEQFGKVD-------------------------DAMLMFDKTTNRHRGFGFVTFES   50 (75)
T ss_dssp             CEEEECCCSSCCH-----HHHHHHHHTTSCCS-------------------------EECCCBCSSSTTSCBEEEEECSC
T ss_pred             CEEEecCCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEEecCCCCCcCcEEEEEECC
Confidence            5899999986544     35677888776653                         33322      234679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .++|.+|.. +++..+.|+.++|.+|
T Consensus        51 ~~~a~~a~~-~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A           51 EDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             HHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred             HHHHHHHHH-CCCCEECCEEEEEEeC
Confidence            999999987 9999999999999875

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.45  E-value=5.6e-07  Score=76.13  Aligned_cols=73  Identities=16%  Similarity=0.292  Sum_probs=60.8

Q ss_pred             CcEEEecCC-CCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-CCeEEEEeCCHHH
Q psy258           39 KSLIITNLN-PDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-FRRMRVNYESSAA  116 (238)
Q Consensus        39 ~TLiitnL~-~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-F~RiiVVF~~~ea  116 (238)
                      +||||.||+ ..+-.     +.|+.+|++|                         |.+.++..++. .|-++|.|.+.++
T Consensus         5 ~~l~V~nL~~~~~~~-----~~L~~~F~~~-------------------------G~v~~v~i~~~~~g~afV~f~~~~~   54 (205)
T 3tyt_A            5 PVLMVYGLDQSKMNC-----DRVFNVFCLY-------------------------GNVEKVKFMKSKPGAAMVEMADGYA   54 (205)
T ss_dssp             SEEEEECCCTTTCCH-----HHHHHHHTTT-------------------------SCEEEEEECTTSTTCEEEEESSHHH
T ss_pred             CEEEEeCCCcccCCH-----HHHHHHHHhc-------------------------CCeEEEEEecCCCCEEEEEECCHHH
Confidence            599999999 55544     3577888855                         55666766663 5789999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |..|...|++..+.|+.|+|.|++.
T Consensus        55 A~~Ai~~lng~~~~g~~l~v~~s~~   79 (205)
T 3tyt_A           55 VDRAITHLNNNFMFGQKMNVCVSKQ   79 (205)
T ss_dssp             HHHHHHHHTTCEETTEECEEEECSC
T ss_pred             HHHHHHHhCCCEECCceEEEEEccC
Confidence            9999999999999999999999975

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.44  E-value=3.2e-07  Score=69.89  Aligned_cols=73  Identities=15%  Similarity=0.160  Sum_probs=57.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||                         .+..+...+      +.+-++|.|
T Consensus        40 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G-------------------------~i~~~~i~~~~~~g~~~g~afV~f   89 (118)
T 2khc_A           40 GCNLFIYHLPQEFTD-----TDLASTFLPFG-------------------------NVISAKVFIDKQTSLSKCFGFVSF   89 (118)
T ss_dssp             SEEEEEECSCTTCCH-----HHHHHHTTTSC-------------------------EEEEEEECCCSSSSCCCCEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CEEEEEEEeCCCCCCcCcEEEEEE
Confidence            359999999987543     45677888554                         455555543      356799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .+.++|.+|...|++..|.|+.|+|.|++
T Consensus        90 ~~~~~A~~A~~~l~g~~~~g~~l~V~~ak  118 (118)
T 2khc_A           90 DNPDSAQVAIKAMNGFQVGTKRLKVQLKK  118 (118)
T ss_dssp             ESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            99999999999999999999999999975

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.44  E-value=2.2e-06  Score=65.19  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..||||.||+..+-+     +.|+.+|++|                         |.+..+..++.      .+-++|.|
T Consensus        17 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f   66 (116)
T 2cqd_A           17 FTKIFVGGLPYHTTD-----ASLRKYFEGF-------------------------GDIEEAVVITDRQTGKSRGYGFVTM   66 (116)
T ss_dssp             SSEEEEECCCSSCCH-----HHHHHHHHTT-------------------------SCEEEEEESCCSSSCCCCSEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhC-------------------------CCeeEEEEEEcCCCCccceEEEEEE
Confidence            469999999986544     3466788855                         55555555543      45799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...+++ .|.|+.|+|.|++.
T Consensus        67 ~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~   95 (116)
T 2cqd_A           67 ADRAAAERACKDPNP-IIDGRKANVNLAYL   95 (116)
T ss_dssp             SSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred             CCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence            999999999999998 79999999999976

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=98.43  E-value=9.1e-07  Score=67.93  Aligned_cols=77  Identities=17%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             CcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-------CCCCeEEEE
Q psy258           39 KSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-------KSFRRMRVN  110 (238)
Q Consensus        39 ~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-------kSF~RiiVV  110 (238)
                      .+|++.|+-. .-+. +++.+.|+.+|++||+                         +.++...       ++.|.++|.
T Consensus         9 ~~l~l~Nm~~~~~l~-dd~~~dl~~~f~~~G~-------------------------V~~v~i~~~~~~~~~~~G~~FV~   62 (105)
T 2pe8_A            9 KVVLLRNMVGAGEVD-EDLEVETKEECEKYGK-------------------------VGKCVIFEIPGAPDDEAVRIFLE   62 (105)
T ss_dssp             SEEEEESSSCSCCC----CHHHHHHHGGGGSC-------------------------EEEEEEEECSSCCTTTSEEEEEE
T ss_pred             CEEEEEcCCChHHhh-HHHHHHHHHHHHhcCC-------------------------EEEEEEecCCCCCCCCcEEEEEE
Confidence            5999999973 2233 4567788888886655                         4444333       356899999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|...|+|..|.|+.+++.|+..
T Consensus        63 f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~   93 (105)
T 2pe8_A           63 FERVESAIKAVVDLNGRYFGGRVVKACFYNL   93 (105)
T ss_dssp             ESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             ECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence            9999999999999999999999999999865

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.43  E-value=7.1e-07  Score=68.13  Aligned_cols=74  Identities=22%  Similarity=0.322  Sum_probs=60.0

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA  115 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e  115 (238)
                      .-.++|||.||+..+-+     +.|+.+|++||+|.                         .+...  -|-++|.|.+.+
T Consensus        29 ~~~~~l~V~nLp~~~t~-----~~L~~~F~~~G~i~-------------------------~v~i~--kg~afV~f~~~~   76 (108)
T 2jvo_A           29 LSNTRLFVRPFPLDVQE-----SELNEIFGPFGPMK-------------------------EVKIL--NGFAFVEFEEAE   76 (108)
T ss_dssp             CSCSEEEECSSCTTCCH-----HHHHHHHTTTSCCC-------------------------EEEEE--TTEEEEECSSHH
T ss_pred             CCCCEEEEECCCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEE--CCEEEEEECCHH
Confidence            33569999999986543     45778888776644                         33333  577999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|.+|...|++..|.|+.++|.|++.
T Consensus        77 ~A~~Ai~~l~g~~~~g~~l~V~~a~~  102 (108)
T 2jvo_A           77 SAAKAIEEVHGKSFANQPLEVVYSKL  102 (108)
T ss_dssp             HHHHHHHHHTTCEETTEECEEESCSC
T ss_pred             HHHHHHHHcCCCEECCeEEEEEEecC
Confidence            99999999999999999999999987

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.43  E-value=7.1e-07  Score=64.28  Aligned_cols=72  Identities=15%  Similarity=0.223  Sum_probs=57.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .||||.||+..+-+     +.|+.+|++||+                         +..+...+      +.+-++|.|.
T Consensus         7 ~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f~   56 (89)
T 3ucg_A            7 RSIYVGNVDYGATA-----EELEAHFHGCGS-------------------------VNRVTILCDKFSGHPKGFAYIEFS   56 (89)
T ss_dssp             TEEEEESCCTTCCH-----HHHHHHHGGGCC-------------------------EEEEEEEESCSSSSCCEEEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEEecCCCCCcceEEEEEEC
Confidence            69999999986633     456788886655                         44444332      3457999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|. .+++..|.|+.++|.++++
T Consensus        57 ~~~~a~~a~-~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A           57 DKESVRTSL-ALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             STHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred             CHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence            999999999 9999999999999999886

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=98.43  E-value=8.9e-07  Score=69.81  Aligned_cols=74  Identities=16%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||                         .+..+...      ++.+-++|.|
T Consensus        46 ~~~l~V~nLp~~~te-----~~L~~~F~~~G-------------------------~I~~v~i~~d~~tg~~~G~afV~F   95 (129)
T 2kxn_B           46 NCCLGVFGLSLYTTE-----RDLREVFSKYG-------------------------PIADVSIVYDQQSRRSRGFAFVYF   95 (129)
T ss_dssp             SSCBCEETCTTSCCH-----HHHHHHHTTTS-------------------------CEEEEEEECCSSSSCCCCEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcC-------------------------CeEEEEEEecCCCCccceEEEEEE
Confidence            459999999987544     35677888554                         45555554      3456799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..|.|+.|+|.|+++
T Consensus        96 ~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~  125 (129)
T 2kxn_B           96 ENVDDAKEAKERANGMELDGRRIRVDFSIT  125 (129)
T ss_dssp             SCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            999999999999999999999999999887

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.43  E-value=1e-06  Score=63.10  Aligned_cols=73  Identities=23%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             CcEEEecCCCCCCCC-hHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258           39 KSLIITNLNPDLFKD-DALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES  113 (238)
Q Consensus        39 ~TLiitnL~~~vf~~-~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~  113 (238)
                      +||||.|||..+-.. +...+.|+.+|++||+                         +..+...    ++.|-++|.|.+
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~-------------------------i~~v~i~~~~g~~~g~afV~f~~   56 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK-------------------------ITNDFYPEEDGKTKGYIFLEYAS   56 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCC-------------------------EEEEECCCBTTBCCCEEEEEESS
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCC-------------------------eEEEEecCCCCcEeEEEEEEECC
Confidence            689999998654321 1156778888886655                         4444433    345789999999


Q ss_pred             HHHHHHHHHHhcCCccCCc-ceEE
Q psy258          114 SAAAAKARINLHQSVFASS-KINV  136 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~-~lrI  136 (238)
                      .++|.+|...|++..|.|+ .++|
T Consensus        57 ~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A           57 PAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             HHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             HHHHHHHHHHhcCcccCCceeEEe
Confidence            9999999999999999998 7765

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.42  E-value=7.1e-07  Score=69.31  Aligned_cols=72  Identities=19%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.+-++|.|
T Consensus        63 ~~~l~v~nlp~~~~~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f  112 (140)
T 2ku7_A           63 KRVLYVGGLAEEVDD-----KVLHAAFIPFGD-------------------------ITDIQIPLDYETEKHRGFAFVEF  112 (140)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEECCCCTTTCCCCSEEEEEE
T ss_pred             CcEEEEEeCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEeecCCCCCcCcEEEEEE
Confidence            469999999986544     457788886654                         55554443      356799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .+.++|.+|...|++..|.|+.|+|.||
T Consensus       113 ~~~~~a~~A~~~l~g~~~~g~~l~v~~A  140 (140)
T 2ku7_A          113 ELAEDAAAAIDNMNESELFGRTIRVNLA  140 (140)
T ss_dssp             SCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            9999999999999999999999999875

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.42  E-value=2.5e-06  Score=63.11  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=59.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.||+..+-+     +.|+.+|++||.                       |.+..+...  -+-++|.|.+.++|
T Consensus        15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~g~-----------------------g~v~~~~~~--~g~afV~f~~~~~A   64 (99)
T 2cpd_A           15 VKILYVRNLMLSTSE-----EMIEKEFNNIKP-----------------------GAVERVKKI--RDYAFVHFSNREDA   64 (99)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHHHTTST-----------------------TCEEEEEEC--SSEEEEEESSHHHH
T ss_pred             cCEEEEeCCCCCCCH-----HHHHHHHHhcCC-----------------------cceEEEEEe--CCeEEEEeCCHHHH
Confidence            359999999986443     356788886611                       345454443  35799999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+|...|++..|.|..|+|.|+++.
T Consensus        65 ~~A~~~l~g~~~~g~~l~v~~a~~~   89 (99)
T 2cpd_A           65 VEAMKALNGKVLDGSPIEVTLAKPV   89 (99)
T ss_dssp             HHHHHHHSSEEETTEEEEEECCCCC
T ss_pred             HHHHHHhCCCEeCCcEEEEEECCCC
Confidence            9999999999999999999999873

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=98.42  E-value=7e-07  Score=78.77  Aligned_cols=80  Identities=18%  Similarity=0.280  Sum_probs=65.3

Q ss_pred             CCcEEEecCCCCC----CCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDL----FKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~v----f~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~  113 (238)
                      ..||||.||+..+    .......+.|+.+|++|                         |+|..+..+++.|-++|.|.+
T Consensus       134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f-------------------------G~I~~v~v~~~kG~AFV~F~~  188 (240)
T 3u1l_A          134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL-------------------------GDIDRIRYVESKNCGFVKFKY  188 (240)
T ss_dssp             CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT-------------------------SCEEEEEEEGGGTEEEEEESS
T ss_pred             CceeecCCCChhhhcccccccCcHHHHHHHHHcc-------------------------CCEEEEEEECCCCEEEEEeCC
Confidence            3599999999765    22234567788888844                         667778888888999999999


Q ss_pred             HHHHHHHHHHhcCCcc------------CCcceEEEEeCCC
Q psy258          114 SAAAAKARINLHQSVF------------ASSKINVYFVQPM  142 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f------------~g~~lrIyFAq~~  142 (238)
                      .++|..|+..|++..+            .|..|+|.||...
T Consensus       189 ~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~  229 (240)
T 3u1l_A          189 QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED  229 (240)
T ss_dssp             HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred             HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence            9999999999999988            7889999999873

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.41  E-value=5.9e-07  Score=66.86  Aligned_cols=75  Identities=19%  Similarity=0.257  Sum_probs=59.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+.      .+-++|.|
T Consensus        15 ~~~l~V~nlp~~~t~-----~~l~~~f~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f   64 (103)
T 2cq0_A           15 NATIRVTNLSEDTRE-----TDLQELFRPFGS-------------------------ISRIYLAKDKTTGQSKGFAFISF   64 (103)
T ss_dssp             SEEEEEESCCTTCCH-----HHHHTTSTTTCC-------------------------EEEEEEEECSSSCSEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------eEEEEEeecCCCCceeeEEEEEE
Confidence            469999999986544     346677885554                         444444432      34699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|...|++..|.|..|+|.|+++.
T Consensus        65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   95 (103)
T 2cq0_A           65 HRREDAARAIAGVSGFGYDHLILNVEWAKPS   95 (103)
T ss_dssp             SSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             CCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence            9999999999999999999999999999873

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.41  E-value=8.9e-07  Score=66.89  Aligned_cols=72  Identities=21%  Similarity=0.310  Sum_probs=58.9

Q ss_pred             CCcEEEecCCCC-CCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNPD-LFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~~-vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      ..+|||.||+.. +-+     +.|+.+|++||+|.                         .+..  +.+-++|.|.+.++
T Consensus        27 ~~~l~V~nl~~~~~t~-----~~l~~~F~~~G~v~-------------------------~v~i--~~g~afV~f~~~~~   74 (110)
T 1wf1_A           27 NSRVFIGNLNTALVKK-----SDVETIFSKYGRVA-------------------------GCSV--HKGYAFVQYSNERH   74 (110)
T ss_dssp             SSEEEECSCCCSSCCH-----HHHHHHHGGGSCCS-------------------------EEEE--ETTEEEEECSSSHH
T ss_pred             CcEEEEeCCCcccCCH-----HHHHHHHHhCCCeE-------------------------EEEE--eCCEEEEEECCHHH
Confidence            469999999987 433     45678888776654                         3333  56789999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|...|++..|.|..|+|.|++.
T Consensus        75 A~~A~~~l~g~~~~g~~l~V~~a~~   99 (110)
T 1wf1_A           75 ARAAVLGENGRVLAGQTLDINMAGE   99 (110)
T ss_dssp             HHHHHHHHTTCEETTEECCEEESCC
T ss_pred             HHHHHHHcCCCEECCeEEEEEECCC
Confidence            9999999999999999999999975

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=98.40  E-value=1.4e-06  Score=66.74  Aligned_cols=58  Identities=21%  Similarity=0.301  Sum_probs=46.8

Q ss_pred             HHHHhhhhcCCceEEEecC--------CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258           84 QIETLLSQFGKPKSFQYLK--------SFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus        84 ~~~~~~~~~~~iv~fv~Lk--------SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+++.+++||.+.++...+        +.|.++|.|.+.++|.+|...|+|..|.|+.+++.|+..
T Consensus        31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~   96 (105)
T 3v4m_A           31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP   96 (105)
T ss_dssp             HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence            3334444666677766553        568999999999999999999999999999999999754

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.39  E-value=8.2e-07  Score=65.65  Aligned_cols=73  Identities=18%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.|+  .+     -.+.|+.+|++||                         .+..+...++-+-++|.|.+.++|
T Consensus        15 ~~~l~V~n~--~~-----t~~~l~~~F~~~G-------------------------~i~~v~i~~~~g~afV~f~~~~~a   62 (97)
T 1x5p_A           15 GNTLYVYGE--DM-----TPTLLRGAFSPFG-------------------------NIIDLSMDPPRNCAFVTYEKMESA   62 (97)
T ss_dssp             CSEEEEECS--SC-----CHHHHHHHHTTTS-------------------------CEEEEEEETTTTEEEEEESSHHHH
T ss_pred             CCEEEEcCC--CC-----CHHHHHHHHhhCC-------------------------CEEEEEecCCCCEEEEEECCHHHH
Confidence            369999996  22     2356778888554                         455555567888999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+|...|++..|.|..|+|.|+++.
T Consensus        63 ~~Ai~~l~g~~~~g~~l~v~~a~~~   87 (97)
T 1x5p_A           63 DQAVAELNGTQVESVQLKVNIARKQ   87 (97)
T ss_dssp             HHHHHHTTTEEETTEEEEEECCSSC
T ss_pred             HHHHHHhCCCeECCeEEEEEECCCC
Confidence            9999999999999999999999873

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.39  E-value=1.5e-06  Score=65.66  Aligned_cols=85  Identities=18%  Similarity=0.157  Sum_probs=59.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~  113 (238)
                      ..||||.||+..+-+     +.|+.+|++||.|.+=.               ..--+.+.+..=    ++.+-++|.|.+
T Consensus        15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~~~~---------------~~~~~~v~i~~~~~~g~~~g~afV~f~~   74 (113)
T 2cpe_A           15 NSAIYVQGLNDSVTL-----DDLADFFKQCGVVKMNK---------------RTGQPMIHIYLDKETGKPKGDATVSYED   74 (113)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHHTTTSCBCBCS---------------SSCCBSEECCBCTTTCSBCSEEEEEBSS
T ss_pred             CCEEEEcCCCCCCCH-----HHHHHHHHhcCCEeEcc---------------ccCccCEEEEEeCCCCCeeeEEEEEECC
Confidence            469999999976544     45678888776643000               000001122111    234679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .++|.+|...|++..|.|..|+|.+++..
T Consensus        75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  103 (113)
T 2cpe_A           75 PPTAKAAVEWFDGKDFQGSKLKVSLARKK  103 (113)
T ss_dssp             HHHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred             HHHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence            99999999999999999999999999873

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=98.39  E-value=1e-06  Score=68.89  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=60.6

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRV  109 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiV  109 (238)
                      +-..+|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.+-++|
T Consensus        40 ~~~~~l~V~nLp~~~~~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV   89 (139)
T 1u6f_A           40 DVLRNLMVNYIPTTVDE-----VQLRQLFERYGP-------------------------IESVKIVCDRETRQSRGYGFV   89 (139)
T ss_dssp             TTTSEEEEESCSTTCCH-----HHHHHHHHHHSC-------------------------EEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEEcCCCCCcceEEEE
Confidence            33469999999987654     356778885554                         54444443      2456999


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .|.+.++|.+|...|++..|.|+.|+|.|++..
T Consensus        90 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  122 (139)
T 1u6f_A           90 KFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             EESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             EECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            999999999999999999999999999999873

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.38  E-value=1.7e-06  Score=66.00  Aligned_cols=81  Identities=19%  Similarity=0.260  Sum_probs=59.3

Q ss_pred             CcEEEecCCC--CCCCC----hHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--CCCCeEEEE
Q psy258           39 KSLIITNLNP--DLFKD----DALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--KSFRRMRVN  110 (238)
Q Consensus        39 ~TLiitnL~~--~vf~~----~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--kSF~RiiVV  110 (238)
                      .||+|.||-.  .+-.+    +.+.+.|+.+|++||+|                         ..+...  .+-|-++|.
T Consensus        16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v-------------------------~~v~i~~~~~~G~afV~   70 (112)
T 2dit_A           16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQI-------------------------RKLLLFDRHPDGVASVS   70 (112)
T ss_dssp             CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCC-------------------------SEEEEETTCTTCEEEEE
T ss_pred             eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCE-------------------------eEEEEecCCCCEEEEEE
Confidence            4999999943  11111    12456677777766554                         444222  246789999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCCCCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQPMTP  144 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t~  144 (238)
                      |.+.++|.+|...|++..|.|+.++|.|+.+.+.
T Consensus        71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~  104 (112)
T 2dit_A           71 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD  104 (112)
T ss_dssp             CSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred             ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence            9999999999999999999999999999987443

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=1.3e-06  Score=64.93  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhh-cCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQ-FGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++ ||+                         +..+...+     +.+-++|.|
T Consensus         9 ~~~l~V~nLp~~~t~-----~~l~~~F~~~~G~-------------------------v~~v~i~~~~~g~~~g~afV~f   58 (104)
T 2dhg_A            9 EYSLFVGDLTPDVDD-----GMLYEFFVKVYPS-------------------------CRGGKVVLDQTGVSKGYGFVKF   58 (104)
T ss_dssp             CCCEEEECCCTTCCH-----HHHHHHHHHHCTT-------------------------EEEEEEEECTTCCEEEEEEEEE
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHHhCCC-------------------------eEEEEEEECCCCCccceEEEEE
Confidence            469999999986544     356778885 654                         44444433     346799999


Q ss_pred             CCHHHHHHHHHHhcCCc-cCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSV-FASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~-f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++.. +.|..|+|.|+.+
T Consensus        59 ~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~   89 (104)
T 2dhg_A           59 TDELEQKRALTECQGAVGLGSKPVRLSVAIP   89 (104)
T ss_dssp             SCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred             CCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence            99999999999999999 9999999999876

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.35  E-value=2.1e-06  Score=64.96  Aligned_cols=74  Identities=22%  Similarity=0.288  Sum_probs=57.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      +++|||.||+..+-+     +.|+.+|++||+                         +..+...+     +.+-++|.|.
T Consensus        25 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~~~i~~~~~g~~~g~afV~f~   74 (114)
T 1x5o_A           25 PTNLYISNLPLSMDE-----QELENMLKPFGQ-------------------------VISTRILRDSSGTSRGVGFARME   74 (114)
T ss_dssp             TTEEEEESCCTTCCH-----HHHHHTTTTTSC-------------------------EEEEEEEECSSSCEEEEEEEEES
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEECCCCCcceEEEEEEC
Confidence            579999999986543     356788886655                         44444433     2456999999


Q ss_pred             CHHHHHHHHHHhcCCcc--------CCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVF--------ASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f--------~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..+        .+.+++|.|+.+
T Consensus        75 ~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p  111 (114)
T 1x5o_A           75 STEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP  111 (114)
T ss_dssp             CHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred             CHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence            99999999999999888        567799999876

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=98.34  E-value=1e-06  Score=68.58  Aligned_cols=73  Identities=14%  Similarity=0.023  Sum_probs=58.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcC-CCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--CCCCeEEEEeCCHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFG-KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--KSFRRMRVNYESSA  115 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--kSF~RiiVVF~~~e  115 (238)
                      .+|||.||+..+-+     +.|+.+|++|| +|.                         .....  ++.|-++|.|.+.+
T Consensus        29 ~~l~VgnLp~~~te-----~dL~~~F~~~G~~v~-------------------------~v~i~~~~~rGfaFV~F~~~e   78 (111)
T 2jvr_A           29 YRITMKNLPEGCSW-----QDLKDLARENSLETT-------------------------FSSVNTRDFDGTGALEFPSEE   78 (111)
T ss_dssp             EEEEEECSSCCCCH-----HHHHHHHHHHTCCCS-------------------------EEECSSCSSSCCEEEEESSHH
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHHHhCCeeE-------------------------EEEEEcCCCCCEEEEEECCHH
Confidence            49999999986544     45678888776 443                         22221  46678999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|.+|...|++..|.|..|+|.+++.
T Consensus        79 ~A~~Ai~~lng~~l~Gr~i~V~~a~~  104 (111)
T 2jvr_A           79 ILVEALERLNNIEFRGSVITVERDDN  104 (111)
T ss_dssp             HHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred             HHHHHHHHcCCCEECCeEEEEEECCC
Confidence            99999999999999999999999875

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.33  E-value=1.7e-06  Score=67.61  Aligned_cols=73  Identities=23%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC------CeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF------RRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF------~RiiVVF~  112 (238)
                      +||+|.|||..+-+     +.|+.+|++|                         |.+..+...+..      |-++|.|.
T Consensus         3 ~~l~v~nlp~~~~~-----~~l~~~f~~~-------------------------G~i~~v~~~~~~~~~~~~g~afV~f~   52 (167)
T 1fxl_A            3 TNLIVNYLPQNMTQ-----EEFRSLFGSI-------------------------GEIESCKLVRDKITGQSLGYGFVNYI   52 (167)
T ss_dssp             SEEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred             ceEEEcCCCCCCCH-----HHHHHHHHhc-------------------------CCeEEEEEEeCCCCCcceeEEEEEEC
Confidence            69999999987643     3466778855                         556566555544      67999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|+..+++..+.|+.++|.++.+
T Consensus        53 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   81 (167)
T 1fxl_A           53 DPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (167)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence            99999999999999999999999999876

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.32  E-value=2.5e-06  Score=67.88  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=60.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.|-++|.|
T Consensus        70 ~~~l~v~nl~~~~~~-----~~l~~~F~~~G~-------------------------v~~~~i~~~~~~g~~~g~afV~f  119 (158)
T 2kn4_A           70 MTSLKVDNLTYRTSP-----DTLRRVFEKYGR-------------------------VGDVYIPRDRYTKESRGFAFVRF  119 (158)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------EEEEECCCCSSCTTSCCEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEeecCCCCccceEEEEEE
Confidence            469999999986544     346678885654                         54444443      446799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|...|++..|.|..|+|.|+++.
T Consensus       120 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  150 (158)
T 2kn4_A          120 HDKRDAEDAMDAMDGAVLDGRELRVQMARYG  150 (158)
T ss_dssp             SBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            9999999999999999999999999999874

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.32  E-value=2.4e-06  Score=67.73  Aligned_cols=75  Identities=15%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .||||.||+..+     -.+.|+.+|++||+|                         ..+...+      +.+-++|.|.
T Consensus        48 ~~l~V~nLp~~~-----te~~L~~~F~~~G~i-------------------------~~v~i~~~~~~g~~~G~afV~F~   97 (135)
T 2lea_A           48 TSLKVDNLTYRT-----SPDTLRRVFEKYGRV-------------------------GDVYIPRDRYTKESRGFAFVRFH   97 (135)
T ss_dssp             CCEEEECCCSSC-----HHHHHHHHHGGGSCC-------------------------SEEECCCCSSSSSCCSCCEEECS
T ss_pred             CEEEEeCCCCCC-----CHHHHHHHHHhcCCE-------------------------EEEEEEecCCCCccceEEEEEEC
Confidence            499999999764     334677888866654                         4444332      3457999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      +.++|.+|...|++..|.|+.|+|.|++...
T Consensus        98 ~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~  128 (135)
T 2lea_A           98 DKRDAEDAMDAMDGAVLDGRELRVQMARYGR  128 (135)
T ss_dssp             CHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred             CHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            9999999999999999999999999998733

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=98.30  E-value=1.4e-06  Score=70.73  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=59.1

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~~  113 (238)
                      ||||.||+..+-.     +.|+.+|++||+                         +..+...+.      .+-++|.|.+
T Consensus        74 ~l~V~nLp~~~t~-----~~L~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f~~  123 (165)
T 1rk8_A           74 ILFVTSIHEEAQE-----DEIQEKFCDYGE-------------------------IKNIHLNLDRRTGFSKGYALVEYET  123 (165)
T ss_dssp             EEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTSSEEEEEEEEESS
T ss_pred             EEEEeCCCCCCCH-----HHHHHHhhcCCC-------------------------EEEEEEEecCCCCcEeeEEEEEECC
Confidence            7999999986543     456788886654                         555544432      4679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      .++|..|...|++..|.|..|+|.|+....
T Consensus       124 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  153 (165)
T 1rk8_A          124 HKQALAAKEALNGAEIMGQTIQVDWCFVKG  153 (165)
T ss_dssp             HHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred             HHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence            999999999999999999999999997733

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.30  E-value=4.4e-06  Score=66.74  Aligned_cols=76  Identities=22%  Similarity=0.119  Sum_probs=60.1

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRV  109 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiV  109 (238)
                      .-+++|+|.||+..+-+     +.|+.+|++||+                         +..+...+      +.+-++|
T Consensus        37 ~~~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV   86 (156)
T 1h2v_Z           37 KKSCTLYVGNLSFYTTE-----EQIYELFSKSGD-------------------------IKKIIMGLDKMKKTACGFCFV   86 (156)
T ss_dssp             TTCCEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCccceEEEE
Confidence            34579999999976544     456788886655                         44444433      2356999


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|.+.++|.+|...|++..|.|..|+|.|+++
T Consensus        87 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  118 (156)
T 1h2v_Z           87 EYYSRADAENAMRYINGTRLDDRIIRTDWDAG  118 (156)
T ss_dssp             EESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             EECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            99999999999999999999999999999987

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=98.30  E-value=1.2e-06  Score=63.70  Aligned_cols=73  Identities=19%  Similarity=0.209  Sum_probs=59.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|||.||+..+-+     +.|+.+|++| ++.                         .+..-++.|-++|.|.+.++|
T Consensus         5 ~~~l~V~nLp~~~t~-----~~l~~~F~~~-~v~-------------------------~~~i~~~~g~afV~f~~~~~a   53 (88)
T 1wg1_A            5 SSGILVKNLPQDSNC-----QEVHDLLKDY-DLK-------------------------YCYVDRNKRTAFVTLLNGEQA   53 (88)
T ss_dssp             CCCEEEESCCSSCCH-----HHHHHHTCSS-CCC-------------------------CEEEEGGGTEEEECCSCHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHhhC-CeE-------------------------EEEEeCCCcEEEEEECCHHHH
Confidence            469999999986544     4567788866 443                         322237788999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|...|++..+.|+.++|.+++.
T Consensus        54 ~~Ai~~l~g~~~~g~~l~V~~a~~   77 (88)
T 1wg1_A           54 QNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             HHHHHHHTTEEETTEEEEEEECCC
T ss_pred             HHHHHHhCCCeECCcEEEEEEcCC
Confidence            999999999999999999999876

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=98.29  E-value=1.1e-06  Score=61.37  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=52.7

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~~  113 (238)
                      ||+|.|||..+-+     +.|+.+|++||++.                         .+...      ++.|-++|.|.+
T Consensus         1 ~l~v~nLp~~~t~-----~~l~~~F~~~G~i~-------------------------~v~i~~~~~~~~~~g~afV~f~~   50 (75)
T 1iqt_A            1 KIFVGGLSPDTPE-----EKIREYFGGFGEVE-------------------------SIELPMDNKTNKRRGFCFITFKE   50 (75)
T ss_dssp             CEEESCCCSSCCH-----HHHHHHHHHHSCCS-------------------------EECCCCSCCCSSSCCCEEEECSS
T ss_pred             CEEEeCCCCCCCH-----HHHHHHHHhcCCeE-------------------------EEEEEecCCCCCcCCEEEEEECC
Confidence            6999999987644     45678888666543                         33332      345679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .++|.+|... ++..+.|+.++|.+|
T Consensus        51 ~~~a~~Ai~~-~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A           51 EEPVKKIMEK-KYHNVGLSKCEIKVA   75 (75)
T ss_dssp             SHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred             HHHHHHHHHh-CCCeECCEEEEEEEC
Confidence            9999999985 778899999988765

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.29  E-value=1.3e-06  Score=67.01  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=58.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..||||.||+..+-+     +.|+.+|++||+                         +..+..++      +.+-++|.|
T Consensus        36 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f   85 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTA-----QDLEAHFSSCGS-------------------------INRITILCDKFSGHPKGYAYIEF   85 (124)
T ss_dssp             HTEEEEEEECTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEEECTTSSCEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEecCCCCCcccEEEEEE
Confidence            359999999976543     456788886655                         44444432      356799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|. .|++..|.|..|+|.+++..
T Consensus        86 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~  115 (124)
T 2jwn_A           86 AERNSVDAAV-AMDETVFRGRTIKVLPKRTN  115 (124)
T ss_dssp             SSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred             CCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence            9999999999 89999999999999999873

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.29  E-value=2.2e-06  Score=61.38  Aligned_cols=80  Identities=9%  Similarity=0.103  Sum_probs=59.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..||||.||+..+-+     +.|+.+|++||++.-.              .....+.+......++.+-++|.|.+.++|
T Consensus         6 ~~~l~V~nLp~~~t~-----~~l~~~F~~~~~~~g~--------------~~~~~~~v~~~~~~~~kg~afV~f~~~~~a   66 (87)
T 2hzc_A            6 ARRLYVGNIPFGITE-----EAMMDFFNAQMRLGGL--------------TQAPGNPVLAVQINQDKNFAFLEFRSVDET   66 (87)
T ss_dssp             GGEEEEESCCTTCCH-----HHHHHHHHHHHHHTTC--------------CSSSSCSEEEEEECSSSSEEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHHhhhccc--------------ccCCCCcceEEEecCCCcEEEEEcCCHHHH
Confidence            469999999986643     4567788866211100              000111677888888889999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEE
Q psy258          118 AKARINLHQSVFASSKINVY  137 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIy  137 (238)
                      .+|. .|++..|.|+.++|.
T Consensus        67 ~~A~-~l~g~~~~g~~l~V~   85 (87)
T 2hzc_A           67 TQAM-AFDGIIFQGQSLKIR   85 (87)
T ss_dssp             HHHG-GGTTCEETTEECEEE
T ss_pred             HHHH-hcCCCEECCeEEEEe
Confidence            9999 999999999888875

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.28  E-value=1.6e-06  Score=65.78  Aligned_cols=73  Identities=16%  Similarity=0.189  Sum_probs=58.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF  111 (238)
                      ..||||.||+..+-+     +.|+.+|++||                         .+..+...      ++.+-++|.|
T Consensus        25 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~~g~~~g~afV~f   74 (114)
T 2cq4_A           25 ARTVFCMQLAARIRP-----RDLEDFFSAVG-------------------------KVRDVRIISDRNSRRSKGIAYVEF   74 (114)
T ss_dssp             HTEEEEESCCTTCCH-----HHHHHHHTTTS-------------------------CEEEEEECCSCCSSSCCCCEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhCC-------------------------CEeEEEEEecCCCCccCcEEEEEe
Confidence            359999999976544     45678888554                         45555554      3446799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|. .|++..|.|..|+|.|++.
T Consensus        75 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~  103 (114)
T 2cq4_A           75 CEIQSVPLAI-GLTGQRLLGVPIIVQASQA  103 (114)
T ss_dssp             SCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred             CcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence            9999999999 9999999999999999865

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=1.4e-06  Score=66.83  Aligned_cols=73  Identities=16%  Similarity=0.380  Sum_probs=58.9

Q ss_pred             cEEEecCCC----CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258           40 SLIITNLNP----DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA  115 (238)
Q Consensus        40 TLiitnL~~----~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e  115 (238)
                      |+.|.-.+.    ..|. ++|...|.+.|++||++.                         ....-.  .|+||.|.+.+
T Consensus         9 tv~V~~~~~~~~~~~fd-~~l~~~L~~~F~~~G~Vi-------------------------~vr~~~--d~~fVtF~d~~   60 (91)
T 2dnr_A            9 TVLVSIKSSLPENNFFD-DALIDELLQQFASFGEVI-------------------------LIRFVE--DKMWVTFLEGS   60 (91)
T ss_dssp             EEEEEEECSSTTTCSCC-HHHHHHHHHHHHTTCCEE-------------------------EEEECS--SSEEEEESSHH
T ss_pred             eEEEEeccCccccccCC-HHHHHHHHHHHHhCCCeE-------------------------EEEEec--CCEEEEECChH
Confidence            788777662    4566 899999999999776643                         333332  56999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|.+|.. |++..+.|+.++|.++.+
T Consensus        61 sAlaAi~-mnG~~v~Gr~LkV~lkt~   85 (91)
T 2dnr_A           61 SALNVLS-LNGKELLNRTITIALKSP   85 (91)
T ss_dssp             HHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred             HHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence            9999998 999999999999999765

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.28  E-value=3.4e-06  Score=59.05  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=55.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~  112 (238)
                      .||+|.|||..+-+ +    .|+.+|++||++.                         .....      ++.|-++|.|.
T Consensus         1 ~~l~v~nlp~~~t~-~----~l~~~F~~~G~v~-------------------------~v~i~~~~~~~~~~g~afV~f~   50 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQ-E----GLREYFGQFGEVK-------------------------ECLVMRDPLTKRSRGFGFVTFM   50 (77)
T ss_dssp             CCEEEESCCSSCCS-H----HHHHHHTTTSCCC-------------------------CEEEECCCCSSSCSSEEEECCC
T ss_pred             CEEEEeCCCCCCCH-H----HHHHHHHhcCCEE-------------------------EEEEecCCCCCCcCceEEEEEc
Confidence            48999999987766 3    4667888776654                         33332      23568999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      +.++|.+|...++ ..+.|+.++|.+|
T Consensus        51 ~~~~a~~a~~~~~-~~~~g~~l~v~~a   76 (77)
T 1uaw_A           51 DQAGVDKVLAQSR-HELDSKTIDPKVA   76 (77)
T ss_dssp             CTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred             CHHHHHHHHHhCC-CccCCEEEEEEec
Confidence            9999999999999 8899999999886

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.27  E-value=8e-07  Score=71.89  Aligned_cols=84  Identities=10%  Similarity=0.088  Sum_probs=65.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhh-hhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLL-SQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      ..||||.||+..+-+     +.|+.+|++||++.               .++ .....+.....-++.|-++|.|.+.++
T Consensus         4 ~~~l~V~nLp~~~te-----~~l~~~F~~~g~i~---------------g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~   63 (198)
T 2yh0_A            4 ARRLYVGNIPFGITE-----EAMMDFFNAQMRLG---------------GLTQAPGNPVLAVQINQDKNFAFLEFRSVDE   63 (198)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHHHHHHHHH---------------TCCSSSSCSEEEEEEETTTTEEEEEESCSHH
T ss_pred             eeEEEEcCCCCCCCH-----HHHHHHHHHHHhhc---------------ccccCCCCceEEeEecCCCCEEEEEeCCHHH
Confidence            579999999987644     45678899886533               000 000166777777888999999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      |.+|+ .|++..|.|+.++|.+++..
T Consensus        64 A~~Al-~l~g~~~~g~~i~v~~~~~~   88 (198)
T 2yh0_A           64 TTQAM-AFDGIIFQGQSLKIRRPHDY   88 (198)
T ss_dssp             HHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred             HHHHH-HhcCCEEcCceEEEeCCCCC
Confidence            99999 89999999999999998763

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=98.27  E-value=9.3e-07  Score=64.09  Aligned_cols=72  Identities=24%  Similarity=0.280  Sum_probs=55.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      ++|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.|-++|.|.
T Consensus         2 ~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f~   51 (90)
T 2ki2_A            2 RNIYVGNLVYSATS-----EQVKELFSQFGK-------------------------VFNVKLIYDRETKKPKGFGFVEMQ   51 (90)
T ss_dssp             EEEEEEEECTTSSH-----HHHTTTHHHHTC-------------------------CSEEEECCCSSSCCCCEEEEEEEC
T ss_pred             cEEEECCCCCCCCH-----HHHHHHHHhcCC-------------------------EEEEEEEEcCCCCCcceEEEEEEC
Confidence            48999999986544     346677886655                         44444433      3457999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.+ |.+|...|++..+.|+.++|.+|..
T Consensus        52 ~~~-a~~a~~~l~g~~~~g~~l~V~~a~~   79 (90)
T 2ki2_A           52 EES-VSEAIAKLDNTDFMGRTIRVTEANP   79 (90)
T ss_dssp             TTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred             CHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence            999 9999999999999999999999987

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.27  E-value=2.9e-06  Score=63.27  Aligned_cols=73  Identities=15%  Similarity=0.197  Sum_probs=57.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~RiiVV  110 (238)
                      +.||||.||+..+-+     +.|+.+|++|                         | +..+...+       +.+-++|.
T Consensus        15 ~~~l~V~nlp~~~t~-----~~l~~~F~~~-------------------------G-i~~v~i~~~~~~~g~~~g~afV~   63 (104)
T 1wi8_A           15 PYTAFLGNLPYDVTE-----ESIKEFFRGL-------------------------N-ISAVRLPREPSNPERLKGFGYAE   63 (104)
T ss_dssp             CEEEEEESCCSSCCH-----HHHHHHTTTS-------------------------C-EEEEECCBCSSCTTSBCSCEEEE
T ss_pred             CCEEEEeCCCCcCCH-----HHHHHHHHHC-------------------------C-ceEEEEecCCCCCCCcCeEEEEE
Confidence            469999999987544     3566778855                         5 44444432       24569999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      |.+.++|.+|. .|++..|.|..|+|.|+++.
T Consensus        64 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           64 FEDLDSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             ESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             ECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence            99999999999 99999999999999999873

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.27  E-value=2.7e-06  Score=73.26  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAAA  117 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA  117 (238)
                      ++|+|.||+..+-     .+.|+.+|++|                         |.+..+...+.- +-++|.|.+.++|
T Consensus       208 ~~l~v~nl~~~~~-----~~~l~~~F~~~-------------------------G~i~~v~~~~~~~g~afV~f~~~~~A  257 (282)
T 3pgw_A          208 HILFLTNLPEETN-----ELMLSMLFNQF-------------------------PGFKEVRLVPGRHDIAFVEFDNEVQA  257 (282)
T ss_pred             CEEEEeCCCCcCC-----HHHHHHHHHhc-------------------------CCeEEEEEecCCCcEEEEEeCCHHHH
Confidence            5899999997543     34667788855                         556666666655 6899999999999


Q ss_pred             HHHHHHhcCCccC-CcceEEEEeC
Q psy258          118 AKARINLHQSVFA-SSKINVYFVQ  140 (238)
Q Consensus       118 ~~Ar~~L~~~~f~-g~~lrIyFAq  140 (238)
                      .+|+..|++..|. |+.|+|.||+
T Consensus       258 ~~A~~~l~g~~~~~g~~l~v~~ak  281 (282)
T 3pgw_A          258 GAARDALQGFKITQNNAMKISFAK  281 (282)
T ss_pred             HHHHHHcCCcEeCCCCEEEEEEec
Confidence            9999999999998 9999999986

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=98.27  E-value=5.9e-06  Score=64.52  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=59.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~  113 (238)
                      .++|||.||+..+-+     +.|+.+|++||++.                   .  .-+.+..-    ++.|-++|.|.+
T Consensus        23 ~~~lfV~nL~~~~te-----~~L~~~F~~~G~v~-------------------~--~~v~i~~d~~tg~~rG~aFV~f~~   76 (131)
T 2m2b_A           23 NDTIILRNLNPHSTM-----DSILGALAPYAVLS-------------------S--SNVRVIKDKQTQLNRGFAFIQLST   76 (131)
T ss_dssp             CCEEEECSCCTTCCS-----HHHHHHHGGGCCCC-------------------T--TTEECCBCSSSSSBCSCEEEECCH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHhCCcc-------------------e--eeEEEEEcCCCCCcceEEEEEECC
Confidence            569999999987655     34667899887764                   0  00222222    345679999999


Q ss_pred             HHHHHHHHHHhcCC----ccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQS----VFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~----~f~g~~lrIyFAq~  141 (238)
                      . +|.+|...|++.    .+.|+.|+|.|+++
T Consensus        77 ~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~  107 (131)
T 2m2b_A           77 I-EAAQLLQILQALHPPLTIDGKTINVEFAKG  107 (131)
T ss_dssp             H-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred             H-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence            9 999999999998    89999999999987

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=6.7e-07  Score=66.27  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=56.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~  113 (238)
                      .++|||.||+..+-+     +.|+.+|++|+.                          +.+..-+    +.+-++|.|.+
T Consensus        15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~~~--------------------------~~~~~~~~~~~~~g~afV~f~~   63 (102)
T 2fc8_A           15 SKTLFVKGLSEDTTE-----ETLKESFDGSVR--------------------------ARIVTDRETGSSKGFGFVDFNS   63 (102)
T ss_dssp             CSSEEEECCCTTCCH-----HHHHHTSTTCSE--------------------------EEEEECSSSCSEEEEEEEECSS
T ss_pred             CCEEEEeCCCCccCH-----HHHHHHhcCCeE--------------------------EEEEecCCCCCcCcEEEEEECC
Confidence            469999999986544     345677774422                          2222222    23579999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .++|.+|...|++..|.|+.|+|.|+++.
T Consensus        64 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   92 (102)
T 2fc8_A           64 EEDAKAAKEAMEDGEIDGNKVTLDWAKPK   92 (102)
T ss_dssp             HHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             HHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence            99999999999999999999999999873

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.26  E-value=3.9e-06  Score=68.42  Aligned_cols=75  Identities=23%  Similarity=0.409  Sum_probs=60.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-CCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-SFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-SF~RiiVVF~~~ea  116 (238)
                      .++|+|.||+..+-+     +.|+.+|++||-                        .+..+..++ +-+.++|.|.+.++
T Consensus       120 ~~~l~v~nl~~~~~~-----~~l~~~f~~~G~------------------------~v~~v~i~~~~~g~afV~f~~~~~  170 (198)
T 1qm9_A          120 SATLHLSNIPPSVSE-----EDLKVLFSSNGG------------------------VVKGFKFFQKDRKMALIQMGSVEE  170 (198)
T ss_dssp             CCEEEECCCCTTCCH-----HHHHHHHHHTTS------------------------CCCEEEESSTTSSCEEEECSSHHH
T ss_pred             ccEEEEeCCCCCCCH-----HHHHHHHHHcCC------------------------CceEEEEEeCCCcEEEEEeCCHHH
Confidence            359999999976533     456778885540                        455555544 56889999999999


Q ss_pred             HHHHHHHhcCCccC-CcceEEEEeCC
Q psy258          117 AAKARINLHQSVFA-SSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~-g~~lrIyFAq~  141 (238)
                      |.+|+..|++..+. |..++|.|+++
T Consensus       171 A~~A~~~l~g~~~~~g~~l~v~~a~~  196 (198)
T 1qm9_A          171 AVQALIDLHNHDLGENHHLRVSFSKS  196 (198)
T ss_dssp             HHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred             HHHHHHHhcCCccCCCCeEEEEeecc
Confidence            99999999999999 89999999986

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.25  E-value=2.5e-06  Score=66.58  Aligned_cols=73  Identities=14%  Similarity=0.131  Sum_probs=58.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|+|.||+..+-.     +.|+.+|++|                         |.+..+..++.      .|-++|.|
T Consensus        87 ~~~l~v~nl~~~~t~-----~~l~~~f~~~-------------------------G~i~~~~i~~~~~~~~~~g~afV~f  136 (166)
T 3md3_A           87 TFNLFVGDLNVNVDD-----ETLRNAFKDF-------------------------PSYLSGHVMWDMQTGSSRGYGFVSF  136 (166)
T ss_dssp             CEEEEEESCCTTCCH-----HHHHHHHTTS-------------------------TTEEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CceEEECCCCCCCCH-----HHHHHHHhcc-------------------------CCeeEEEEEecCCCCCcceEEEEEe
Confidence            459999999986533     4566778855                         55555555533      34599999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .+.++|.+|...|++..+.|+.++|.||+
T Consensus       137 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A          137 TSQDDAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             CCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence            99999999999999999999999999986

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.25  E-value=1.3e-06  Score=69.17  Aligned_cols=76  Identities=11%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcC-------CceEEEecCCCCeEEEEe
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFG-------KPKSFQYLKSFRRMRVNY  111 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~iv~fv~LkSF~RiiVVF  111 (238)
                      .+|||.|||..+-+     +.|+.+|++||++.                     |       .+......++.|-++|.|
T Consensus         5 ~~l~V~nLp~~~t~-----~~l~~~F~~~g~~~---------------------g~~~~~~~~v~~~~~~~~~g~afV~f   58 (172)
T 2g4b_A            5 RRLYVGNIPFGITE-----EAMMDFFNAQMRLG---------------------GLTQAPGNPVLAVQINQDKNFAFLEF   58 (172)
T ss_dssp             GEEEEESCCTTCCH-----HHHHHHHHHHHHHT---------------------TCCSSSSCSEEEEEEETTTTEEEEEE
T ss_pred             cEEEEcCCCcccCH-----HHHHHHHHHHhhhc---------------------ccccCCCCceeeeEecCCCCEEEEEe
Confidence            69999999986544     45667888885422                     4       677777788889999999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|+ .+++..+.|+.++|.++..
T Consensus        59 ~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~   87 (172)
T 2g4b_A           59 RSVDETTQAM-AFDGIIFQGQSLKIRRPHD   87 (172)
T ss_dssp             SSHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred             CCHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence            9999999999 8999999999999988765

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.25  E-value=4.7e-06  Score=70.45  Aligned_cols=73  Identities=23%  Similarity=0.423  Sum_probs=60.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcC-CceEEEecC-CCCeEEEEeCCHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFG-KPKSFQYLK-SFRRMRVNYESSAA  116 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~fv~Lk-SF~RiiVVF~~~ea  116 (238)
                      ++|+|.||+..+-+     +.|+.+|++|                         | .+..+..++ +-+.++|.|.+.++
T Consensus       152 ~~l~V~nlp~~~t~-----~~l~~~f~~~-------------------------G~~i~~v~i~~~~~g~afV~f~~~~~  201 (229)
T 2adc_A          152 ATLHLSNIPPSVSE-----EDLKVLFSSN-------------------------GGVVKGFKFFQKDRKMALIQMGSVEE  201 (229)
T ss_dssp             SEEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCCEEEEEECSSSTTCEEEEESSHHH
T ss_pred             CEEEEeCCCccCCH-----HHHHHHHHHc-------------------------CCCeeEEEEEECCCcEEEEEECCHHH
Confidence            59999999986533     4567788855                         5 555666644 67899999999999


Q ss_pred             HHHHHHHhcCCccC-CcceEEEEeCC
Q psy258          117 AAKARINLHQSVFA-SSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~-g~~lrIyFAq~  141 (238)
                      |.+|+..|++..+. |..++|.|+++
T Consensus       202 A~~Ai~~l~g~~~~~g~~l~v~~a~~  227 (229)
T 2adc_A          202 AVQALIDLHNHDLGENHHLRVSFSKS  227 (229)
T ss_dssp             HHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             HHHHHHHHCCCccCCCCeEEEEEecC
Confidence            99999999999999 99999999986

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=98.25  E-value=3.6e-06  Score=62.74  Aligned_cols=74  Identities=14%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMR  108 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~Rii  108 (238)
                      ....||||.||+..+-+ +    .|+.+|++|                         | +..+...+       +.|-++
T Consensus        17 ~~~~~l~V~nLp~~~t~-~----~l~~~F~~~-------------------------G-i~~v~i~~~~~~~g~~~g~af   65 (100)
T 2j76_E           17 SPPYTAFLGNLPYDVTE-E----SIKEFFRGL-------------------------N-ISAVRLPREPSNPERLKGFGY   65 (100)
T ss_dssp             ---CEEEESCCSSCCSS-S----HHHHHSCSS-------------------------C-EEEEECSCCTTTTCCCCSCEE
T ss_pred             CCCcEEEEeCCCCCCCH-H----HHHHHHHhc-------------------------C-CeEEEEEecCCcCCccCeEEE
Confidence            34569999999988766 3    355777755                         5 44444443       346799


Q ss_pred             EEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          109 VNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.|.+.++|.+|. .|++..|.|+.++|.++++
T Consensus        66 V~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~   97 (100)
T 2j76_E           66 AEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ   97 (100)
T ss_dssp             EEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred             EEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence            9999999999999 9999999999999999886

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=98.25  E-value=5.1e-06  Score=68.97  Aligned_cols=74  Identities=22%  Similarity=0.299  Sum_probs=59.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      .++|||.||+..+-+     +.|+.+|++||+                         +..+...+     +.+-++|.|.
T Consensus        88 ~~~l~V~nLp~~~te-----~~L~~~F~~~G~-------------------------I~~v~i~~d~~g~~kG~afV~F~  137 (177)
T 2f3j_A           88 GAKLLVSNLDFGVSD-----ADIQELFAEFGT-------------------------LKKAAVDYDRSGRSLGTADVHFE  137 (177)
T ss_dssp             CEEEEEECCCSCCCH-----HHHHHHHHHTSC-------------------------CSEEEECCCTTSSCSCCEEEEES
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEECCCCCEeeEEEEEeC
Confidence            359999999986654     346678886655                         44444433     4577999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|..|...|++..|.|..|+|.||..
T Consensus       138 ~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~  166 (177)
T 2f3j_A          138 RRADALKAMKQYKGVPLDGRPMDIQLVAS  166 (177)
T ss_dssp             CHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            99999999999999999999999999976

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.24  E-value=7.4e-06  Score=62.83  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|||.||+..+-+ ++    |+.+|++|                         |.+..+...+. +-++|.|.+.++|
T Consensus        16 ~~~l~V~nLp~~~t~-~~----l~~~F~~~-------------------------G~v~~~~i~~~-g~afV~f~~~~~a   64 (115)
T 3beg_B           16 ENRVVVSGLPPSGSW-QD----LKDHMREA-------------------------GDVCYADVYRD-GTGVVEFVRKEDM   64 (115)
T ss_dssp             -CCEEEEECCSSCCT-TH----HHHHHGGG-------------------------SCEEEEEECTT-SEEEEEESSHHHH
T ss_pred             CcEEEEeCCCCCCCH-HH----HHHHHHhc-------------------------CCeEEEEEecC-CEEEEEECCHHHH
Confidence            469999999987766 33    45678855                         55555555555 8899999999999


Q ss_pred             HHHHHHhcCCccCCcc-----eEEEEeCC
Q psy258          118 AKARINLHQSVFASSK-----INVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~-----lrIyFAq~  141 (238)
                      ..|...|++..|.|..     +++..+.+
T Consensus        65 ~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~   93 (115)
T 3beg_B           65 TYAVRKLDNTKFRSHEGETAYIRVKVDGP   93 (115)
T ss_dssp             HHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred             HHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence            9999999999999988     55555443

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.24  E-value=4e-06  Score=68.67  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=59.7

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      .++|+|.||+..+-     .+.|+.+|++|                         |.+..+..++.      -+-++|.|
T Consensus       125 ~~~l~v~nlp~~~t-----~~~l~~~f~~~-------------------------G~v~~v~i~~~~~~g~~~g~afV~F  174 (216)
T 2qfj_A          125 FNRIYVASVHQDLS-----DDDIKSVFEAF-------------------------GKIKSATLARDPTTGKHKGYGFIEY  174 (216)
T ss_dssp             SCEEEEECCCTTCC-----HHHHHHHHTTS-------------------------SCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CcEEEEeCCCCcCC-----HHHHHHHHhcc-------------------------CCeeEEEEEecCCCCCcCceEEEEe
Confidence            46999999997643     34567788855                         55555555543      45699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..|.|+.++|.|+++
T Consensus       175 ~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~  204 (216)
T 2qfj_A          175 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVT  204 (216)
T ss_dssp             SSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred             cCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence            999999999999999999999999999987

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.23  E-value=6.1e-06  Score=62.98  Aligned_cols=60  Identities=18%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             HHHHHHHHhh-hhcCCceEEEecCC-----CCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258           80 ALKEQIETLL-SQFGKPKSFQYLKS-----FRRMRVNYESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus        80 ~~~~~~~~~~-~~~~~iv~fv~LkS-----F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .+.+.+++.+ ++||.+..+...+.     .|.++|.|.+.++|.+|...|+|..|.|+.++|.|+
T Consensus        38 ~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           38 EFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             HHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            4566788888 89999999888764     578999999999999999999999999999999886

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.23  E-value=3.7e-06  Score=66.03  Aligned_cols=73  Identities=16%  Similarity=0.347  Sum_probs=59.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      +||+|.|||..+-+     +.|+.+|++|                         |++..+...+.      .|-++|.|.
T Consensus         4 ~~l~v~nlp~~~~~-----~~l~~~f~~~-------------------------G~i~~v~i~~~~~~~~~~g~afV~f~   53 (168)
T 1b7f_A            4 TNLIVNYLPQDMTD-----RELYALFRAI-------------------------GPINTCRIMRDYKTGYSYGYAFVDFT   53 (168)
T ss_dssp             SEEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCEETTTTEECSEEEEEES
T ss_pred             cEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCeeEEEEEEeCCCCccceEEEEEEC
Confidence            69999999986544     3466788855                         55555555443      367999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|..|+..+++..+.|+.++|.++.+
T Consensus        54 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   82 (168)
T 1b7f_A           54 SEMDSQRAIKVLNGITVRNKRLKVSYARP   82 (168)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence            99999999999999999999999999876

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-07  Score=71.80  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=60.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe----cCCCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY----LKSFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~----LkSF~RiiVVF~~  113 (238)
                      .++|||.||+..+-+     +.|+.+|++||++..-.-               .-.+.+.+..    -++.+-++|.|.+
T Consensus         7 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~~~~~---------------~~~~~v~i~~~~~~g~~~g~afV~f~~   66 (116)
T 2lcw_A            7 NNTIFVQGLGENVTI-----ESVADYFKQIGIIKTNKK---------------TGQPMINLYTDRETGKLKGEATVSFDD   66 (116)
Confidence            469999999976544     356788998887650000               0000011111    2345679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .++|.+|...|++..|.|+.|+|.++++.
T Consensus        67 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (116)
T 2lcw_A           67 PPSAKAAIDWFDGKEFSGNPIKVSFATRR   95 (116)
Confidence            99999999999999999999999999873

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=3.8e-06  Score=61.05  Aligned_cols=72  Identities=10%  Similarity=0.203  Sum_probs=57.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      ..+|+|.||+..+-+     +.|+.+|++| +                         +..+...+     +.|-++|.|.
T Consensus        10 ~~~l~v~nLp~~~t~-----~~l~~~F~~~-~-------------------------i~~v~i~~~~~g~~~g~afV~f~   58 (91)
T 2dgw_A           10 CHTVKLRGAPFNVTE-----KNVMEFLAPL-K-------------------------PVAIRIVRNAHGNKTGYIFVDFS   58 (91)
T ss_dssp             CCEEEEECCCSSCCH-----HHHHHHHTTS-C-------------------------CSEEEEEECTTSCEEEEEEEECS
T ss_pred             ccEEEEECCCCCCCH-----HHHHHHHhhC-C-------------------------ceEEEEEECCCCCCceEEEEEEC
Confidence            579999999986544     3467788855 3                         44444333     2457999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|.. +++..|.|+.++|.+++.
T Consensus        59 ~~~~a~~A~~-~~g~~~~gr~i~v~~a~~   86 (91)
T 2dgw_A           59 NEEEVKQALK-CNREYMGGRYIEVFREKS   86 (91)
T ss_dssp             SHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred             CHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence            9999999999 999999999999999987

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=98.21  E-value=1.5e-06  Score=69.19  Aligned_cols=74  Identities=15%  Similarity=0.221  Sum_probs=58.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEE-EecCCCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSF-QYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~f-v~LkSF~RiiVVF~~~ea  116 (238)
                      .++|+|.||+..+-.     +.|+.+|++||++.                         .+ ..-++.|-++|.|.+.++
T Consensus        99 ~~~l~v~nlp~~~t~-----~~l~~~F~~~g~v~-------------------------~~~~~~~~~g~afV~f~~~~~  148 (175)
T 1fje_B           99 ARTLLAKNLSFNITE-----DELKEVFEDALEIR-------------------------LVSQDGKSKGIAYIEFKSEAD  148 (175)
T ss_dssp             GGEEEEESCCSSCCH-----HHHHHHCTTCSEEE-------------------------EECSSSSCCSEEEEECSSHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCeEE-------------------------EecCCCCCceEEEEEECCHHH
Confidence            359999999976533     45678888665543                         22 111345679999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|...|++..+.|..++|.||++
T Consensus       149 A~~A~~~l~g~~~~g~~i~v~~a~~  173 (175)
T 1fje_B          149 AEKNLEEKQGAEIDGRSVSLYYTGE  173 (175)
T ss_dssp             HHHHHHHHTEEEETTEEEEEEECSS
T ss_pred             HHHHHHHhCCCEECCeEEEEEecCC
Confidence            9999999999999999999999986

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=98.20  E-value=3e-06  Score=73.12  Aligned_cols=75  Identities=19%  Similarity=0.073  Sum_probs=57.3

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      ++|||.||+..+-+     +.|+.+|++||.+                       .+..+..++      +.+-++|.|.
T Consensus        69 ~~lfVgnL~~~~te-----~~L~~~F~~~G~~-----------------------~v~~v~i~~d~~tg~skGfaFV~f~  120 (229)
T 3q2s_C           69 IALYIGNLTWWTTD-----EDLTEAVHSLGVN-----------------------DILEIKFFENRANGQSKGFALVGVG  120 (229)
T ss_dssp             CEEEEESCCTTCCH-----HHHHHHHHTTTCC-----------------------CEEEEEEEECTTTCCEEEEEEEEES
T ss_pred             cEEEEeCCCCCCCH-----HHHHHHHHHHCCc-----------------------ceEEEEEEecCCCCccceEEEEEEC
Confidence            47999999986654     3566788866600                       344443332      2345999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..|.|+.|+|.|++.
T Consensus       121 ~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~  149 (229)
T 3q2s_C          121 SEASSKKLMDLLPKRELHGQNPVVTPVNK  149 (229)
T ss_dssp             CTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred             CHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence            99999999999999999999999999865

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=98.20  E-value=1.3e-05  Score=62.76  Aligned_cols=55  Identities=25%  Similarity=0.148  Sum_probs=44.2

Q ss_pred             HhhhhcCCceEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258           87 TLLSQFGKPKSFQYLKS--FRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus        87 ~~~~~~~~iv~fv~LkS--F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.+++||.+.++...+.  .|.++|.|.+.++|.+|...|+|..|.|+.+++.|+..
T Consensus        36 ~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~   92 (114)
T 3s6e_A           36 EECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL   92 (114)
T ss_dssp             HHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence            33335555666555543  58999999999999999999999999999999999843

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=98.20  E-value=5.2e-06  Score=63.14  Aligned_cols=78  Identities=18%  Similarity=0.146  Sum_probs=57.2

Q ss_pred             CCCCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCe
Q psy258           33 NDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRR  106 (238)
Q Consensus        33 ~~~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~R  106 (238)
                      +...-+.+|||.||+..+-+     +.|+.+|++||                         .+..+...+      +.|-
T Consensus        20 ~~~~~~~~lfV~nLp~~~te-----~~L~~~F~~~G-------------------------~i~~v~i~~~~~tg~~kg~   69 (109)
T 2rs2_A           20 HMGSSGCKMFIGGLSWQTTQ-----EGLREYFGQFG-------------------------EVKECLVMRDPLTKRSRGF   69 (109)
T ss_dssp             ------CCEEEESCCTTCCH-----HHHHHHHTTTS-------------------------CEEEEEECCCTTTCCCTTC
T ss_pred             ccCCCCCEEEEeCCCCCCCH-----HHHHHHHHccC-------------------------CeEEEEEEECCCCCCcCcE
Confidence            33444679999999986554     35678888554                         455555544      3467


Q ss_pred             EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.|.+.++|.+|...++ ..+.|+.++|.++.+
T Consensus        70 afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~~  103 (109)
T 2rs2_A           70 GFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFP  103 (109)
T ss_dssp             EEEEESSHHHHHHHHHSSC-EEETTEEEEEEECCC
T ss_pred             EEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEccC
Confidence            9999999999999999875 779999999999886

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.18  E-value=1.7e-06  Score=66.87  Aligned_cols=76  Identities=12%  Similarity=0.084  Sum_probs=58.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~  114 (238)
                      ..+|||.||+..+-+     +.|+.+|++||.|.                      .++.+..-   ++-|-++|.|.+.
T Consensus        25 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~v~----------------------~~~~~~~~~~g~~~G~afV~F~~~   77 (124)
T 1wel_A           25 GFCVYLKGLPFEAEN-----KHVIDFFKKLDIVE----------------------DSIYIAYGPNGKATGEGFVEFRNE   77 (124)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHSCSSCBCT----------------------TTCEEEECTTSSEEEEEEEEBSSS
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHhcCCcc----------------------ceEEEEECCCCCCCeEEEEEECCH
Confidence            469999999976554     45778999887765                      11222211   2345699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|.. +++..|.|+.|+|.++..
T Consensus        78 ~~a~~Al~-~~g~~~~gr~i~V~~a~~  103 (124)
T 1wel_A           78 ADYKAALC-RHKQYMGNRFIQVHPITK  103 (124)
T ss_dssp             HHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred             HHHHHHHH-hCCCeECCcEEEEEECCH
Confidence            99999999 999999999999999865

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.18  E-value=1.1e-06  Score=63.03  Aligned_cols=72  Identities=22%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      +.+|||.||+..+-+     +.|+.+|++||+                         +..+...+.      .+-++|.|
T Consensus         5 ~~~l~v~nlp~~~t~-----~~l~~~f~~~G~-------------------------i~~~~i~~~~~~~~~~g~afV~f   54 (85)
T 1x4e_A            5 SSGLYIRGLQPGTTD-----QDLVKLCQPYGK-------------------------IVSTKAILDKTTNKCKGYGFVDF   54 (85)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHTTSTTTSC-------------------------EEEEEEECCSSSCSCCSEEEEEE
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCCcCcEEEEEE
Confidence            569999999986544     346677885554                         544444332      45699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .+.++|.+|...|++..+.|..+++.++
T Consensus        55 ~~~~~a~~A~~~l~g~~~~g~~~~~~~~   82 (85)
T 1x4e_A           55 DSPSAAQKAVTALKASGVQAQMAKQSGP   82 (85)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred             CCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence            9999999999999999998877776553

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.17  E-value=7.7e-06  Score=64.19  Aligned_cols=72  Identities=19%  Similarity=0.294  Sum_probs=56.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|+|.||+..+-+     +.|+.+|++||+                         +..+...+.      -|-++|.|
T Consensus        89 ~~~l~v~nl~~~~t~-----~~l~~~f~~~G~-------------------------i~~~~i~~~~~~~~~~g~afV~f  138 (168)
T 1b7f_A           89 DTNLYVTNLPRTITD-----DQLDTIFGKYGS-------------------------IVQKNILRDKLTGRPRGVAFVRY  138 (168)
T ss_dssp             TCEEEEESCCTTCCH-----HHHHHHHTSSSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CCCEEEeCCCCCCCH-----HHHHHhhhcCCc-------------------------EEEEEEEEcCCCCCcceEEEEEE
Confidence            469999999976543     457788885554                         544444433      25699999


Q ss_pred             CCHHHHHHHHHHhcCCccCC--cceEEEEe
Q psy258          112 ESSAAAAKARINLHQSVFAS--SKINVYFV  139 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g--~~lrIyFA  139 (238)
                      .+.++|.+|...|++..+.|  .+++|.||
T Consensus       139 ~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A          139 NKREEAQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             SSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence            99999999999999999977  88999886

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.16  E-value=6.1e-06  Score=65.06  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=56.4

Q ss_pred             CcEEEec--CCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           39 KSLIITN--LNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        39 ~TLiitn--L~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      ++|||+|  |+..+=+     +.|+.+|++||                         .+..+...+..+=++|.|.+.++
T Consensus        26 ~~L~V~Ng~L~~~~te-----~~L~~~F~~fG-------------------------~v~~v~i~~~rgfaFV~f~~~~~   75 (114)
T 2cq2_A           26 QSLVVANGGLGNGVSR-----NQLLPVLEKCG-------------------------LVDALLMPPNKPYSFARYRTTEE   75 (114)
T ss_dssp             SEEEEETCTGGGTCCH-----HHHHHHHHHHS-------------------------CEEEEECCTTCSCEEEEESSHHH
T ss_pred             CEEEEECCCCCCCCCH-----HHHHHHHHhcC-------------------------CeEEEEEeCCCCEEEEEECCHHH
Confidence            4899966  8865433     46778888665                         45555555555679999999999


Q ss_pred             HHHHHHHhcCCcc-----CCcceEEEEeCC
Q psy258          117 AAKARINLHQSVF-----ASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f-----~g~~lrIyFAq~  141 (238)
                      |.+|...|++..+     .+.++.+.|++.
T Consensus        76 A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~  105 (114)
T 2cq2_A           76 SKRAYVTLNGKEVVDDLGQKITLYLNFVEK  105 (114)
T ss_dssp             HHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred             HHHHHHHhCCCEEccccCCCcEEEEEeccc
Confidence            9999999999876     466899999986

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.15  E-value=7.1e-06  Score=66.88  Aligned_cols=74  Identities=18%  Similarity=0.254  Sum_probs=59.9

Q ss_pred             CcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHH
Q psy258           39 KSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAA  116 (238)
Q Consensus        39 ~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~ea  116 (238)
                      ++|||.||+. .+-+     +.|+.+|++||                         .+..+...+.. |-++|.|.+.++
T Consensus         4 ~~l~v~nlp~~~~~~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~g~afV~f~~~~~   53 (198)
T 1qm9_A            4 SVLLVSNLNPERVTP-----QSLFILFGVYG-------------------------DVQRVKILFNKKENALVQMADGNQ   53 (198)
T ss_dssp             CEEEEECCCSSSCCH-----HHHHHHHHTTC-------------------------CCSEEECSTTCSSCCEEECTTTHH
T ss_pred             cEEEEeCCCcccCCH-----HHHHHHHHhcC-------------------------CEEEEEEEeCCCCEEEEEECCHHH
Confidence            6999999998 6554     45667888554                         45555555543 569999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      |..|+..|++..+.|..++|.+++..
T Consensus        54 a~~A~~~l~~~~~~g~~l~v~~a~~~   79 (198)
T 1qm9_A           54 AQLAMSHLNGHKLHGKPIRITLSKHQ   79 (198)
T ss_dssp             HHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred             HHHHHHHhCCCeecCeEEEEEEecCC
Confidence            99999999999999999999999763

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.15  E-value=6.5e-06  Score=61.23  Aligned_cols=72  Identities=11%  Similarity=0.231  Sum_probs=56.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      +.+|||.||+..+-+     +.|+.+|++|                         + +..+..++.      .+-++|.|
T Consensus        15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------g-i~~v~i~~~~~~g~~~g~afV~f   63 (103)
T 2dng_A           15 PYTAYVGNLPFNTVQ-----GDIDAIFKDL-------------------------S-IRSVRLVRDKDTDKFKGFCYVEF   63 (103)
T ss_dssp             CEEEEEESCCTTCCH-----HHHHHHTTTS-------------------------C-EEEEEEEECSSSCSEEEEEEEEE
T ss_pred             CeEEEEeCCCCCCCH-----HHHHHHHHhC-------------------------C-ceEEEEeecCCCCccceEEEEEE
Confidence            469999999986544     3466778855                         3 444444432      34699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|. .|++..|.|+.|+|.|+++
T Consensus        64 ~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~   92 (103)
T 2dng_A           64 DEVDSLKEAL-TYDGALLGDRSLRVDIAEG   92 (103)
T ss_dssp             SSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence            9999999999 9999999999999999987

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.15  E-value=4.6e-06  Score=65.93  Aligned_cols=72  Identities=24%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      .++|+|.||+..+-.     +.|+.+|++|                         |.+..+...+.      .|-++|.|
T Consensus        94 ~~~l~v~nlp~~~t~-----~~l~~~f~~~-------------------------G~v~~v~i~~~~~~g~~~g~afV~f  143 (172)
T 2g4b_A           94 AHKLFIGGLPNYLND-----DQVKELLTSF-------------------------GPLKAFNLVKDSATGLSKGYAFCEY  143 (172)
T ss_dssp             TTCEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred             CCEEEEEcCCCcCCH-----HHHHHHHHhc-------------------------CCceEEEEEecCCCCCcceEEEEEe
Confidence            579999999986543     4567788855                         44555554443      35699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .+.++|.+|...|++..+.|+.++|.||
T Consensus       144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~A  171 (172)
T 2g4b_A          144 VDINVTDQAIAGLNGMQLGDKKLLVQRA  171 (172)
T ss_dssp             SSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence            9999999999999999999999999986

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=98.15  E-value=6.3e-06  Score=64.79  Aligned_cols=76  Identities=17%  Similarity=0.258  Sum_probs=59.3

Q ss_pred             CcEEEecCCC--CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----------CCCe
Q psy258           39 KSLIITNLNP--DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----------SFRR  106 (238)
Q Consensus        39 ~TLiitnL~~--~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----------SF~R  106 (238)
                      .+|++.|+-.  ++.  +++.+.|+..|++||+                         +.++...+          +.|.
T Consensus        21 ~vl~L~Nm~~~~el~--ddleedl~eef~k~G~-------------------------V~~v~I~~~~~~~~~~~~~~G~   73 (118)
T 3ue2_A           21 TVMVLRNMVDPKDID--DDLEGEVTEECGKFGA-------------------------VNRVIIYQEKQGEEEDAEIIVK   73 (118)
T ss_dssp             CEEEEESCSCGGGCC--TTHHHHHHHHHTTTSC-------------------------EEEEEEEEEEESSSTTCEEEEE
T ss_pred             CEEEEECCCCHHHHH--HHHHHHHHHHHhccCC-------------------------EeEEEEeecCCCcccCCcceEE
Confidence            4899999853  332  4577888888885555                         44444332          3378


Q ss_pred             EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.|.+.++|.+|...|+|..|.|+.+++.|+..
T Consensus        74 ~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~  108 (118)
T 3ue2_A           74 IFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ  108 (118)
T ss_dssp             EEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             EEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence            99999999999999999999999999999999754

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.14  E-value=5e-06  Score=63.17  Aligned_cols=73  Identities=16%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .+|||.||+..+-+     +.|+.+|++||+|.                         .+...+      +.+-++|.|.
T Consensus        28 ~~l~V~nLp~~~te-----~~l~~~F~~~G~i~-------------------------~v~i~~~~~~g~~~g~afV~f~   77 (116)
T 1x4b_A           28 RKLFIGGLSFETTE-----ESLRNYYEQWGKLT-------------------------DCVVMRDPASKRSRGFGFVTFS   77 (116)
T ss_dssp             TEEEEECCTTCCCH-----HHHHHHHTSSCCCS-------------------------EEEEECCTTTSSCCSEEEEECS
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhcCCEE-------------------------EEEEEECCCCCCcCceEEEEeC
Confidence            59999999986544     45678888776644                         433333      3468999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      +.++|.+|... ++..|.|+.|+|.++++.
T Consensus        78 ~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~  106 (116)
T 1x4b_A           78 SMAEVDAAMAA-RPHSIDGRVVEPKRAVAR  106 (116)
T ss_dssp             SHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred             CHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence            99999999988 888999999999999873

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=8.1e-06  Score=59.86  Aligned_cols=73  Identities=14%  Similarity=0.094  Sum_probs=55.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCC-eEEEEeCCHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFR-RMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~-RiiVVF~~~ea  116 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+..-+.-+ -++|.|.+.++
T Consensus         8 ~~~l~V~nl~~~~t~-----~~l~~~F~~~G~-------------------------v~~v~~~~~~g~~afV~f~~~~~   57 (94)
T 2e5g_A            8 LRSVFVSGFPRGVDS-----AQLSEYFLAFGP-------------------------VASVVMDKDKGVFAIVEMGDVGA   57 (94)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHGGGTSC-------------------------EEEEEECSSSCCEEEEEESSHHH
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEcCCCCcEEEEEECCHHH
Confidence            369999999976544     456788886655                         44442222223 59999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|.. |++..|.|..++|.++..
T Consensus        58 a~~ai~-l~g~~~~g~~l~V~~a~~   81 (94)
T 2e5g_A           58 REAVLS-QSQHSLGGHRLRVRPREQ   81 (94)
T ss_dssp             HHHHHT-CSCCEETTEECCCBCSCC
T ss_pred             HHHHHh-cCCeEECCEEEEEEECCc
Confidence            999999 999999999999988765

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.11  E-value=6.2e-06  Score=66.61  Aligned_cols=74  Identities=23%  Similarity=0.266  Sum_probs=59.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|+|.||+..+-.     +.|+.+|++|                         |.+..+...+.      .|-++|.|
T Consensus       114 ~~~l~v~nl~~~~~~-----~~l~~~f~~~-------------------------G~v~~~~~~~~~~~~~~~g~afV~f  163 (198)
T 2yh0_A          114 AHKLFIGGLPNYLND-----DQVKELLTSF-------------------------GPLKAFNLVKDSATGLSKGYAFCEY  163 (198)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHHHTB-------------------------SCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHc-------------------------CCccEEEEeecCCCCCcceEEEEEE
Confidence            469999999986543     4567788855                         45555555443      35699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..+.|..++|.|+++
T Consensus       164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  193 (198)
T 2yh0_A          164 VDINVTDQAIAGLNGMQLGDKKLLVQRASV  193 (198)
T ss_dssp             SSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            999999999999999999999999999987

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.11  E-value=1.1e-05  Score=68.23  Aligned_cols=74  Identities=18%  Similarity=0.254  Sum_probs=60.3

Q ss_pred             CcEEEecCCC-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHH
Q psy258           39 KSLIITNLNP-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAA  116 (238)
Q Consensus        39 ~TLiitnL~~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~ea  116 (238)
                      .||||.||+. .+-+     +.|+.+|++|                         |.+..+...+.- +-++|.|.+.++
T Consensus        35 ~~l~V~nLp~~~~te-----~~L~~~F~~~-------------------------G~i~~v~i~~~~~g~afV~F~~~~~   84 (229)
T 2adc_A           35 SVLLVSNLNPERVTP-----QSLFILFGVY-------------------------GDVQRVKILFNKKENALVQMADGNQ   84 (229)
T ss_dssp             SEEEEESCCTTTCCH-----HHHHHHHHHH-------------------------TCEEEEEECCTTSCCEEEEESCHHH
T ss_pred             CEEEEeCCCcccCCH-----HHHHHHHHhC-------------------------CCeEEEEEEECCCCEEEEEECCHHH
Confidence            4999999997 5544     4566778855                         556666666554 569999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      |.+|+..|++..|.|+.++|.|++..
T Consensus        85 A~~Ai~~l~g~~~~g~~l~v~~a~~~  110 (229)
T 2adc_A           85 AQLAMSHLNGHKLHGKPIRITLSKHQ  110 (229)
T ss_dssp             HHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             HHHHHHHhCCCeECCeEEEEEEecCc
Confidence            99999999999999999999999763

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.11  E-value=1.4e-05  Score=65.29  Aligned_cols=73  Identities=19%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .||||.||+..+-+     +.|+.+|++|                         |.+..+..++      +.+-++|.|.
T Consensus        29 ~~l~V~nLp~~~t~-----~~l~~~f~~~-------------------------G~i~~v~i~~~~~~g~~~g~afV~f~   78 (216)
T 2qfj_A           29 SRVYVGSIYYELGE-----DTIRQAFAPF-------------------------GPIKSIDMSWDSVTMKHKGFAFVEYE   78 (216)
T ss_dssp             TEEEEECCCTTCCH-----HHHHHHHGGG-------------------------SCEEEEEECCC-CC-CCCSEEEEEES
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHHhC-------------------------CCEEEEEEeecCCCCccCceEEEEeC
Confidence            59999999987543     3566788855                         5555555544      4577999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|+..+++..|.|+.++|.++..
T Consensus        79 ~~~~A~~A~~~l~~~~~~g~~l~v~~~~~  107 (216)
T 2qfj_A           79 VPEAAQLALEQMNSVMLGGRNIKVGRPSN  107 (216)
T ss_dssp             SHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred             CHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence            99999999999999999999999988765

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.09  E-value=9.6e-06  Score=63.74  Aligned_cols=72  Identities=22%  Similarity=0.284  Sum_probs=57.0

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .+|+|.||+..+-.     +.|+.+|++||+                         +..+...+      +.|-++|.|.
T Consensus        88 ~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~~~i~~~~~~g~~~g~afV~f~  137 (167)
T 2cjk_A           88 GKIFVGGIGPDVRP-----KEFEEFFSQWGT-------------------------IIDAQLMLDKDTGQSRGFGFVTYD  137 (167)
T ss_dssp             EEEEEEEECTTCCH-----HHHHHHHHTTSC-------------------------CSEEECCCSSSSSTTSEEEEEEES
T ss_pred             CeEEECCCCCCCCH-----HHHHHHHHhCcc-------------------------EEEEEEEEcCCCCccceEEEEEEC
Confidence            49999999986543     456788886655                         44444433      3467999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|+. +++..+.|+.++|.||++
T Consensus       138 ~~~~a~~A~~-~~~~~~~g~~i~V~~a~p  165 (167)
T 2cjk_A          138 SADAVDRVCQ-NKFIDFKDRKIEIKRAEP  165 (167)
T ss_dssp             SHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred             CHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence            9999999998 899999999999999987

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.08  E-value=7.7e-06  Score=68.39  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=58.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCCH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYESS  114 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~~  114 (238)
                      .+|+|.||+..+-+     +.|+.+|++||+                         +.....++    +.|-++|.|.+.
T Consensus       104 ~~l~v~nl~~~~t~-----~~l~~~F~~~G~-------------------------i~~~~i~~d~~~~~g~~fV~f~~~  153 (213)
T 4f02_A          104 GNIFIKNLDKSIDN-----KALYDTFSAFGN-------------------------ILSCKVVCDENGSKGYGFVHFETQ  153 (213)
T ss_dssp             TEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEEETTEEEEEEEEEESSH
T ss_pred             ccceECCcccccHH-----HHHHHHHhhcCC-------------------------eEEEEeeccCCCCceEEEEEeCCH
Confidence            58999999986543     456788886655                         44444332    345699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|...|++..+.|+.|+|.||++
T Consensus       154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~  180 (213)
T 4f02_A          154 EAAERAIEKMNGMLLNDRKVFVGRFKS  180 (213)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            999999999999999999999999976

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.08  E-value=1.3e-05  Score=60.98  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=57.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      ..||||.|||..+-+     +.|+.+|++||+                         +.++...+     +.|-++|.|.
T Consensus        11 ~~~lfV~~Lp~~~te-----~~L~~~F~~~G~-------------------------v~~v~i~~d~~g~~rG~aFV~F~   60 (103)
T 1s79_A           11 NRSVYIKGFPTDATL-----DDIKEWLEDKGQ-------------------------VLNIQMRRTLHKAFKGSIFVVFD   60 (103)
T ss_dssp             GGCEEEECCCTTCCH-----HHHHHHHHTSSC-------------------------EEEEEEECCCTTSCCCEEEEEES
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHhhcCC-------------------------EEEEEEEECCCCCCccEEEEEEC
Confidence            369999999986543     456788886655                         44444443     4567999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|..|.. +++..|.|+.++|.+++.
T Consensus        61 ~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~   88 (103)
T 1s79_A           61 SIESAKKFVE-TPGQKYKETDLLILFKDD   88 (103)
T ss_dssp             SHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred             CHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence            9999999999 899999999999998754

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=98.07  E-value=1e-05  Score=65.97  Aligned_cols=76  Identities=13%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||.+                       .+..+...+      +.|-++|.|
T Consensus        55 ~~~lfVgnLp~~~te-----~~L~~~F~~~G~i-----------------------~v~~v~i~~d~~tg~skGfaFV~f  106 (156)
T 3n9u_C           55 RAAVYVGSFSWWTTD-----QQLIQVIRSIGVY-----------------------DVVELKFAENRANGQSKGYAEVVV  106 (156)
T ss_dssp             -CEEEEECCCTTCCH-----HHHHHHHHHTTCC-----------------------CEEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHHCCc-----------------------cEEEEEEEecCCCCccceEEEEEE
Confidence            359999999986544     3566788866510                       344544432      234699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...|++..|.|+.|+|.++..
T Consensus       107 ~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~  136 (156)
T 3n9u_C          107 ASENSVHKLLELLPGKVLNGEKVDVRPATR  136 (156)
T ss_dssp             SCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred             CCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence            999999999999999999999999999865

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=98.07  E-value=1.6e-05  Score=62.56  Aligned_cols=73  Identities=22%  Similarity=0.296  Sum_probs=55.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-----CCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-----FRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-----F~RiiVVF~  112 (238)
                      ..+|+|.||+..+-.     +.|+.+|++||                         .+..+...+.     -|-++|.|.
T Consensus        95 ~~~l~v~nl~~~~t~-----~~l~~~F~~~G-------------------------~i~~v~~~~~~~g~~~g~afV~f~  144 (175)
T 3nmr_A           95 DRKLFIGMISKKCTE-----NDIRVMFSSFG-------------------------QIEECRILRGPDGLSRGCAFVTFT  144 (175)
T ss_dssp             GSEEEEESCCTTCCH-----HHHHHHHGGGS-------------------------CEEEEEEEECTTSCEEEEEEEEES
T ss_pred             CCeEEEcCCCCcCCH-----HHHHHHHHhCC-------------------------CEEEEEEEECCCCCEEEEEEEEEC
Confidence            459999999986544     45677888554                         4555544443     234999999


Q ss_pred             CHHHHHHHHHHhcCCccCC---cceEEEEeC
Q psy258          113 SSAAAAKARINLHQSVFAS---SKINVYFVQ  140 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g---~~lrIyFAq  140 (238)
                      +.++|.+|+..|++..+.+   .+|+|.||.
T Consensus       145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad  175 (175)
T 3nmr_A          145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD  175 (175)
T ss_dssp             SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred             CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence            9999999999999977663   799999973

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.06  E-value=9.9e-06  Score=63.11  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=57.5

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCCH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYESS  114 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~~  114 (238)
                      ||||.|||..+-+     +.|+.+|++||                         ++.++...+     +.|-++|.|.+.
T Consensus         2 ~l~V~nlp~~~t~-----~~l~~~f~~~G-------------------------~i~~v~i~~~~~~~~~g~afV~f~~~   51 (166)
T 3md3_A            2 VLYVGNLDKAITE-----DILKQYFQVGG-------------------------PIANIKIMIDKNNKNVNYAFVEYHQS   51 (166)
T ss_dssp             EEEEEEEETTCCH-----HHHHHHHGGGS-------------------------CEEEEEEECCCC-CCEEEEEEEESSH
T ss_pred             EEEECCCCCcCCH-----HHHHHHHHhcC-------------------------CeEEEEEEECCCCCCCCEEEEEeCCH
Confidence            7999999976544     35667888554                         455544443     335699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|...+++..+.|+.+++.++..
T Consensus        52 ~~a~~A~~~l~~~~~~g~~i~v~~~~~   78 (166)
T 3md3_A           52 HDANIALQTLNGKQIENNIVKINWAFQ   78 (166)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence            999999999999999999999999876

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=98.06  E-value=1.9e-05  Score=62.74  Aligned_cols=78  Identities=23%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      ..+|||.||+..+-+ ++|++.|...|..+|                        -.+.....-++.|-++|.|.+.++|
T Consensus        13 ~~~l~V~nLp~~~t~-~~l~~~f~~~g~~~~------------------------~~~~~~~~~~~~g~afV~f~~~~~a   67 (175)
T 1fje_B           13 PFNLFIGNLNPNKSV-AELKVAISELFAKND------------------------LAVVDVRTGTNRKFGYVDFESAEDL   67 (175)
T ss_dssp             SEEEEEECCCTTSCH-HHHHHHHHHHHHHHT------------------------CCCCEEEEETTTTEEEEEESSHHHH
T ss_pred             CcEEEEeCCCCCCCH-HHHHHHHHHhCCcce------------------------EEEEECCCCccccEEEEEECCHHHH
Confidence            569999999987654 455544444444222                        1344556667888999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|+ .|++..+.|+.++|.+++.
T Consensus        68 ~~A~-~l~g~~~~g~~l~v~~~~~   90 (175)
T 1fje_B           68 EKAL-ELTGLKVFGNEIKLEKPKG   90 (175)
T ss_dssp             HHHH-HGGGEEETTEEEEEECCCC
T ss_pred             HHHH-hcCCCEeCCeEEEEecCCC
Confidence            9999 5999999999999999876

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=98.06  E-value=1.3e-05  Score=57.59  Aligned_cols=71  Identities=11%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+.      .|-++|.|
T Consensus        11 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f   60 (87)
T 3s7r_A           11 AGKMFVGGLSWDTSK-----KDLKDYFTKFGE-------------------------VVDCTIKMDPNTGRSRGFGFILF   60 (87)
T ss_dssp             TTEEEEECCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEeecCCCCccccEEEEEE
Confidence            569999999986633     456688886655                         444444322      34699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .+.++|.+|... ++..+.|+.++|.+|
T Consensus        61 ~~~~~a~~A~~~-~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           61 KDAASVEKVLDQ-KEHRLDGRVIDPKKA   87 (87)
T ss_dssp             SSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred             CCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence            999999999965 566699999998775

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.05  E-value=2.1e-05  Score=61.28  Aligned_cols=72  Identities=19%  Similarity=0.270  Sum_probs=55.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|+|.||+..+-.     +.|+.+|++||                         .+..+...+.      -|-++|.|
T Consensus        88 ~~~l~v~nl~~~~t~-----~~l~~~f~~~G-------------------------~i~~~~i~~~~~~g~~~g~afV~f  137 (167)
T 1fxl_A           88 DANLYVSGLPKTMTQ-----KELEQLFSQYG-------------------------RIITSRILVDQVTGVSRGVGFIRF  137 (167)
T ss_dssp             TCEEEEESCCTTCCH-----HHHHHHHGGGS-------------------------CEEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CCcEEECCCCCcCCH-----HHHHHHHHhcC-------------------------CEeEEEEEecCCCCCccceEEEEe
Confidence            368999999986543     45677888554                         4555444432      35699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCc--ceEEEEe
Q psy258          112 ESSAAAAKARINLHQSVFASS--KINVYFV  139 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~--~lrIyFA  139 (238)
                      .+.++|.+|...|++..+.|.  +++|.||
T Consensus       138 ~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A  167 (167)
T 1fxl_A          138 DKRIEAEEAIKGLNGQKPSGATEPITVKFA  167 (167)
T ss_dssp             SSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence            999999999999999999985  4888886

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=5.7e-06  Score=61.64  Aligned_cols=73  Identities=14%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+.      .+-++|.|
T Consensus        16 ~~~l~V~nlp~~~t~-----~~l~~~F~~~G~-------------------------v~~v~i~~~~~~g~~~g~afV~f   65 (105)
T 2dh8_A           16 IGKLFVGGLDWSTTQ-----ETLRSYFSQYGE-------------------------VVDCVIMKDKTTNQSRGFGFVKF   65 (105)
T ss_dssp             SSEECCBSCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEECSSSCCEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEEeeCCCCCCcceEEEEEE
Confidence            579999999986544     456678886655                         444444433      24699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|... ++..|.|+.|+|.++++
T Consensus        66 ~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~   94 (105)
T 2dh8_A           66 KDPNCVGTVLAS-RPHTLDGRNIDPKPCTP   94 (105)
T ss_dssp             SSTTHHHHHHHH-CSEEETTEEEBCCCSCC
T ss_pred             CCHHHHHHHHHh-CCCeECCEEEEEEEccC
Confidence            999999999999 99999999999999876

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.02  E-value=1.4e-05  Score=68.90  Aligned_cols=73  Identities=21%  Similarity=0.324  Sum_probs=61.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      +||||.||+..+-+     +.|+.+|++|                         |.+..+...++.|-++|.|.+.++|.
T Consensus        23 ~~l~V~nLp~~~te-----~~l~~~F~~~-------------------------G~i~~v~i~~~kg~afV~f~~~~~A~   72 (261)
T 3sde_A           23 CRLFVGNLPTDITE-----EDFKRLFERY-------------------------GEPSEVFINRDRGFGFIRLESRTLAE   72 (261)
T ss_dssp             GEEEEESCCTTCCH-----HHHHHHTGGG-------------------------CCCSEEEEETTTTEEEEECSSHHHHH
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHHhc-------------------------CCEEEEEEeCCCcEEEEEECCHHHHH
Confidence            48999999986643     4566778855                         55666667788899999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|+..+++..+.|..++|.|+.+
T Consensus        73 ~A~~~l~g~~i~g~~l~v~~a~~   95 (261)
T 3sde_A           73 IAKAELDGTILKSRPLRIRFATH   95 (261)
T ss_dssp             HHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHcCCcEECCceeEeeeccc
Confidence            99999999999999999999876

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.02  E-value=2.1e-05  Score=58.27  Aligned_cols=72  Identities=14%  Similarity=0.118  Sum_probs=55.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      .++|||.||+..+-+     +.|+.+|++||+                         +..+...+.      .+-++|.|
T Consensus        15 ~~~l~v~nlp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f   64 (103)
T 2cqg_A           15 TSDLIVLGLPWKTTE-----QDLKEYFSTFGE-------------------------VLMVQVKKDLKTGHSKGFGFVRF   64 (103)
T ss_dssp             CCCEEEESCCSSCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECSSSCSEEEEEEEEE
T ss_pred             CCEEEEEcCCCcCCH-----HHHHHHHHhcCC-------------------------eEEEEEEecCCCCCccceEEEEE
Confidence            469999999986644     357788886655                         444444332      35699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|...  +..+.|..|+|.++.+
T Consensus        65 ~~~~~a~~A~~~--~~~~~g~~l~v~~a~~   92 (103)
T 2cqg_A           65 TEYETQVKVMSQ--RHMIDGRWCDCKLPNS   92 (103)
T ss_dssp             SSHHHHHHHHHS--CEEETTEEEEEECCCT
T ss_pred             CCHHHHHHHHHc--CCeeCCeEEEEEecCC
Confidence            999999999984  5578899999999887

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.00  E-value=1.8e-05  Score=61.16  Aligned_cols=70  Identities=13%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             cEEEecCCC-----CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           40 SLIITNLNP-----DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        40 TLiitnL~~-----~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      |+.|.-+++     ..|. ++|...|...|++||++.                       .+.|+.    .|+||.|.+.
T Consensus        17 Tv~V~~~~~~~~~~~~fd-~~l~~~L~~~F~~~G~Vi-----------------------lvr~v~----d~~fVtF~d~   68 (95)
T 1ufw_A           17 TVVVNLQSPTLEEKNEFP-EDLRTELMQTLGSYGTIV-----------------------LVRINQ----GQMLVTFADS   68 (95)
T ss_dssp             EEEEEESSCCHHHHHSCC-HHHHHHHHHHHHHHSCCS-----------------------EEEEET----TEEEEECSCS
T ss_pred             eEEEEecCCcccccccCC-HHHHHHHHHHHHHCCCEE-----------------------EEEEec----CcEEEEEcCh
Confidence            889888863     3666 899999999999887765                       222222    4599999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEE
Q psy258          115 AAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      ++|.+|.. |++..++|+.++|.+
T Consensus        69 ~sAl~AI~-ldG~~v~Gr~L~V~~   91 (95)
T 1ufw_A           69 HSALSVLD-VDGMKVKGRAVKISG   91 (95)
T ss_dssp             HHHHHHHH-GGGSEETTEEEEEEC
T ss_pred             HHHHHHHh-cCCeeeCCeEEEEec
Confidence            99999998 999999999999876

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=98.00  E-value=1.8e-05  Score=74.65  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=59.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF  111 (238)
                      .+||||.||+..+-.     +.|+.+|++||+|.                         .+..+      ++.+=++|.|
T Consensus       102 ~~~lfV~nL~~~~te-----~~L~~~F~~~G~I~-------------------------~v~i~~d~~tg~~kG~aFV~F  151 (437)
T 3pgw_S          102 FKTLFVARVNYDTTE-----SKLRREFEVYGPIK-------------------------RIHMVYSKRSGKPRGYAFIEY  151 (437)
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHcCCee-------------------------EEEeeccCCCCCccceEEEee
Confidence            469999999987644     45678888776644                         33332      2356799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|..|...|++..|.|..|+|.|++.
T Consensus       152 ~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~  181 (437)
T 3pgw_S          152 EHERDMHSAYKHADGKKIDGRRVLVDVERG  181 (437)
T ss_pred             ccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            999999999999999999999999999987

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.97  E-value=2.2e-05  Score=67.56  Aligned_cols=76  Identities=20%  Similarity=0.233  Sum_probs=60.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      .++|+|.||+..+-.    .+.|+.+|++||+                         +..+...+     +-|.++|.|.
T Consensus       184 ~~~l~v~nlp~~~~~----~~~l~~~f~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~  234 (284)
T 3smz_A          184 SRCLCVDRLPPGFND----VDALCRALSAVHS-------------------------PTFCQLACGQDGQLKGFAVLEYE  234 (284)
T ss_dssp             CSEEEEECCCTTCCC----HHHHHHHTCSSSC-------------------------CSEEEEEECSSCCEEEEEEEECS
T ss_pred             ccEEEEecCCcccCC----HHHHHHHhhCCCC-------------------------eEEEEEEECCCCCcccEEEEEeC
Confidence            469999999986533    2456778886655                         44444433     2467999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      +.++|.+|...|++..+.|+.++|.|+++.
T Consensus       235 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~  264 (284)
T 3smz_A          235 TAEMAEEAQQQADGLSLGGSHLRVSFCAPG  264 (284)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             CHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence            999999999999999999999999999873

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.96  E-value=1.9e-05  Score=60.87  Aligned_cols=76  Identities=16%  Similarity=0.097  Sum_probs=56.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCce--EEEecC---CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK--SFQYLK---SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv--~fv~Lk---SF~RiiVVF~  112 (238)
                      ..||+|.||+..+-+     +.|+.+|++||.+-                      .+.  .+..=+   +.|-++|.|.
T Consensus        17 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~~~----------------------~v~~v~i~~~~~g~~~G~afV~F~   69 (118)
T 2db1_A           17 GYVVKLRGLPWSCSI-----EDVQNFLSDCTIHD----------------------GVAGVHFIYTREGRQSGEAFVELE   69 (118)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHTTTSCBTT----------------------GGGGEEEEECSSSCEEEEEEEEBS
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHHcCCcc----------------------CceeEEEEECCCCCCCeEEEEEEC
Confidence            469999999986644     45778888776621                      022  222222   2345999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|.. +++..+.|+.++|.+++.
T Consensus        70 ~~~~a~~Al~-~~g~~~~gr~i~V~~a~~   97 (118)
T 2db1_A           70 SEDDVKLALK-KDRESMGHRYIEVFKSHR   97 (118)
T ss_dssp             SHHHHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred             CHHHHHHHHh-cCCCeECCeEEEEEECCH
Confidence            9999999999 999999999999999865

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=97.94  E-value=2e-05  Score=65.82  Aligned_cols=73  Identities=22%  Similarity=0.305  Sum_probs=58.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .||||.||+..+-+     +.|+.+|++||                         ++.++...+      +.|-++|.|.
T Consensus        16 ~tlfVgnLp~~~te-----~~L~~~F~~~G-------------------------~I~~v~i~~d~~tg~~~G~afV~F~   65 (213)
T 4f02_A           16 ASLYVGDLHPDVTE-----AMLYEKFSPAG-------------------------PILSIRVCRDMITRRSLGYAYVNFQ   65 (213)
T ss_dssp             CEEEEESCCTTCCH-----HHHHHHHGGGS-------------------------CEEEEEEEECTTTCCEEEEEEEEES
T ss_pred             cEEEEeCCCCCCCH-----HHHHHHHHhhC-------------------------CEEEEEEecccCCCCccccccceeC
Confidence            48999999986544     45677888554                         455554443      3456999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...+++..+.|+.+++.++..
T Consensus        66 ~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~   94 (213)
T 4f02_A           66 QPADAERALDTMNFDVIKGKPVRIMWSQR   94 (213)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CHHHHHHHHHHhhhhhcCCcccccccccc
Confidence            99999999999999999999999999865

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=97.88  E-value=5.7e-06  Score=61.33  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=56.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      +.||||.||+..+-+     +.|+.+|++||+                         +..+...+     +.|-++|.|.
T Consensus         9 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~   58 (102)
T 2xs2_A            9 PNTVFVGGIDVRMDE-----TEIRSFFARYGS-------------------------VKEVKIITDRTGVSKGYGFVSFY   58 (102)
T ss_dssp             EEEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTSCEEEEEEEEES
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------eEEEEEEECCCCCccceEEEEEC
Confidence            469999999976544     356778886655                         44444443     3467999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      +.++|..|..  ++..++|..++|.++..+
T Consensus        59 ~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~   86 (102)
T 2xs2_A           59 NDVDVQKIVE--SQINFHGKKLKLGPAIRK   86 (102)
T ss_dssp             SCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred             CHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence            9999999998  888899999999998763

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.87  E-value=3.6e-05  Score=58.63  Aligned_cols=75  Identities=15%  Similarity=0.099  Sum_probs=57.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCC-cchhhhhhhHHHHHHHHhhhhcCCceEEEe---cCCCCeEEEEeCC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKP-KSFQYLKNDALKEQIETLLSQFGKPKSFQY---LKSFRRMRVNYES  113 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~---LkSF~RiiVVF~~  113 (238)
                      ..||||.||+..+-+     +.|+.+|++||.+ .                       -+.+..   -++.|-++|.|.+
T Consensus        15 ~~~l~V~nLp~~~t~-----~~l~~~F~~~g~v~~-----------------------~v~i~~d~~g~~~G~afV~F~~   66 (114)
T 2cpy_A           15 KVCAHITNIPFSITK-----MDVLQFLEGIPVDEN-----------------------AVHVLVDNNGQGLGQALVQFKN   66 (114)
T ss_dssp             CCEEEEESCCTTSCH-----HHHHHHTTTSCCCST-----------------------TEEECCCTTSSCSSCEEEECSS
T ss_pred             ccEEEEeCcCCcCCH-----HHHHHHHHhCCCcCC-----------------------eEEEEECCCCCcceEEEEEECC
Confidence            469999999986544     3577888866654 2                       122222   2355779999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|.+|... ++..|.|..|+|.++..
T Consensus        67 ~~~a~~Al~~-~~~~~~gr~i~v~~a~~   93 (114)
T 2cpy_A           67 EDDARKSERL-HRKKLNGREAFVHVVTL   93 (114)
T ss_dssp             HHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred             HHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence            9999999877 99999999999999876

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.86  E-value=4.4e-05  Score=65.68  Aligned_cols=73  Identities=21%  Similarity=0.205  Sum_probs=60.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||.|||..+-+     +.|+.+|+                         .|| +.....-++-|-++|.|.+.++|
T Consensus        22 ~~~l~V~nLp~~~te-----~~l~~~F~-------------------------~~G-i~~~~~~~~~g~afV~f~~~~~A   70 (284)
T 3smz_A           22 RRKILIRGLPGDVTN-----QEVHDLLS-------------------------DYE-LKYCFVDKYKGTAFVTLLNGEQA   70 (284)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHTT-------------------------TSC-EEEEEEETTTTEEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHH-------------------------HcC-CEEEEEecCCCEEEEEeCCHHHH
Confidence            369999999987644     34667788                         455 55666678889999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ..|...|++..+.|+.++|.++..
T Consensus        71 ~~A~~~l~~~~~~g~~i~v~~~~~   94 (284)
T 3smz_A           71 EAAINAFHQSRLRERELSVQLQPT   94 (284)
T ss_dssp             HHHHHHHTTCEETTEECEEEECCC
T ss_pred             HHHHHHcCCCeeCCeEEEEEecCC
Confidence            999999999999999999998654

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=97.84  E-value=5.1e-05  Score=60.87  Aligned_cols=75  Identities=15%  Similarity=0.080  Sum_probs=57.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCC---CcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGK---PKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF  111 (238)
                      ..+|+|.||+..+-+     +.|+.+|++||+   +.                       -+.+..=   ++.|-++|.|
T Consensus        44 ~~~lfVgnLp~~~te-----~dL~~~F~~~G~v~~v~-----------------------~v~i~~d~~g~srG~aFV~F   95 (136)
T 2hgl_A           44 GFVVKLRGLPWSCSV-----EDVQNFLSDCTIHDGAA-----------------------GVHFIYTREGRQSGEAFVEL   95 (136)
T ss_dssp             TCEEEEESCCTTCCH-----HHHHHHTTTCCCSSSST-----------------------TEEEEECSSSCEEEEEEEEC
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHhCCcCcee-----------------------EEEEEECCCCCCCeEEEEEE
Confidence            469999999986544     456788998877   22                       2233322   2334599999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|.. +++..+.|+.++|..+..
T Consensus        96 ~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~  124 (136)
T 2hgl_A           96 GSEDDVKMALK-KDRESMGHRYIEVFKSHR  124 (136)
T ss_dssp             SSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred             CCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence            99999999999 999999999999999754

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.83  E-value=5.2e-05  Score=59.59  Aligned_cols=73  Identities=16%  Similarity=0.192  Sum_probs=54.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--------CCCCeEEEE
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--------KSFRRMRVN  110 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--------kSF~RiiVV  110 (238)
                      .||||.|||..+-+     +.|+.+|++||                         ++.++..+        ++.|-++|.
T Consensus         4 ~~l~V~nLp~~~te-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~~~~~~~~g~afV~   53 (175)
T 3nmr_A            4 IKMFVGQVPRTWSE-----KDLRELFEQYG-------------------------AVYEINVLRDRSQNPPQSKGCCFVT   53 (175)
T ss_dssp             EEEEEESCCTTCCH-----HHHHHHHHTTS-------------------------CEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             eEEEEeCCCCCCCH-----HHHHHHHHhCC-------------------------CEEEEEEEecCCCCCCCcceEEEEE
Confidence            59999999986544     35667888554                         45555444        345679999


Q ss_pred             eCCHHHHHHHHHHhcCCccC---CcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFA---SSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~---g~~lrIyFAq~  141 (238)
                      |.+.++|.+|+..|++..+.   +..+++.+++.
T Consensus        54 f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~   87 (175)
T 3nmr_A           54 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADS   87 (175)
T ss_dssp             ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred             ECCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence            99999999999999997765   45677777665

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=97.81  E-value=6.7e-05  Score=56.47  Aligned_cols=78  Identities=15%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-----CCCCeEEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-----KSFRRMRVN  110 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-----kSF~RiiVV  110 (238)
                      +-..+|+|.||+..+-+     +.|+.+|++||.+                      +.+..+..+     ++-|-++|.
T Consensus         9 ~~~~~l~V~nLp~~~te-----~~l~~~F~~~g~~----------------------~~v~~v~i~~~~~g~~~G~afV~   61 (107)
T 2lmi_A            9 DDVFLIRAQGLPWSCTM-----EDVLNFFSDCRIR----------------------NGENGIHFLLNRDGKRRGDALIE   61 (107)
T ss_dssp             SSCCEEEEECCCSSCCS-----HHHHHHTTTSCBT----------------------TTTTTEECCCCTTSTTCSEEEEE
T ss_pred             CCccEEEEeCCCCCCCH-----HHHHHHHHhcCCc----------------------CCcceEEEEECCCCCEeeEEEEE
Confidence            33579999999987766     3456788877652                      113333332     344679999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|.. +++..+.|+.++|.++..
T Consensus        62 F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~   91 (107)
T 2lmi_A           62 MESEQDVQKALE-KHRMYMGQRYVEVYEINN   91 (107)
T ss_dssp             BSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred             ECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence            999999999999 999999999999999765

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.76  E-value=0.00011  Score=55.09  Aligned_cols=73  Identities=18%  Similarity=0.148  Sum_probs=56.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceE-EEec-----CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKS-FQYL-----KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~-fv~L-----kSF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||.                         +.. +...     ++.|-++|.|
T Consensus        15 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------v~~~v~i~~~~~g~~~G~afV~F   64 (104)
T 1wg5_A           15 DGFVRLRGLPFGCSK-----EEIVQFFSGLEI-------------------------VPNGMTLPVDFQGRSTGEAFVQF   64 (104)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHTTTCCE-------------------------EEEEEECCBCSSSCBCSEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcCC-------------------------cceeEEEEECCCCCcceEEEEEE
Confidence            469999999976544     456788886654                         433 2222     3456799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|... ++..+.|+.++|..+..
T Consensus        65 ~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~   93 (104)
T 1wg5_A           65 ASQEIAEKALKK-HKERIGHRYIEIFKSSR   93 (104)
T ss_dssp             SSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred             CCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence            999999999998 89999999999999865

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.75  E-value=5.4e-05  Score=65.37  Aligned_cols=74  Identities=16%  Similarity=0.314  Sum_probs=58.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-------CCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-------FRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-------F~RiiVV  110 (238)
                      ..+|+|.||+..+..    .+.|+.+|++||                         .+..+...+.       -|-++|.
T Consensus       210 ~~~l~v~nlp~~~~t----~~~l~~~F~~~G-------------------------~v~~v~i~~~~~~tg~~~g~afV~  260 (292)
T 2ghp_A          210 GREIMIRNLSTELLD----ENLLRESFEGFG-------------------------SIEKINIPAGQKEHSFNNCCAFMV  260 (292)
T ss_dssp             TTEEEEEEECTTTCC----HHHHHHHHGGGS-------------------------CEEEEECCSCCC---CCCEEEEEE
T ss_pred             CceEEEECCCcccCC----HHHHHHHHhccC-------------------------CeeEEEEEecCCcCCCCceEEEEE
Confidence            469999999986222    245677888554                         4555554442       3459999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|+ .|++..|.|+.++|.||++
T Consensus       261 F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~  290 (292)
T 2ghp_A          261 FENKDSAERAL-QMNRSLLGNREISVSLADK  290 (292)
T ss_dssp             ESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred             eCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence            99999999999 9999999999999999986

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=97.75  E-value=0.00012  Score=53.79  Aligned_cols=72  Identities=11%  Similarity=0.165  Sum_probs=50.5

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-CCCCeEEEEeCCH
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-KSFRRMRVNYESS  114 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-kSF~RiiVVF~~~  114 (238)
                      .-++||||.||+..+-+     +.|+.+|++||+                         +.++... ++.|=++|.|.+.
T Consensus         9 ~~~~~l~V~~Lp~~~te-----~~L~~~F~~~G~-------------------------i~~v~i~~~srGfaFV~F~~~   58 (89)
T 3d2w_A            9 HHGSKVFVGRCTEDMTA-----EELQQFFCQYGE-------------------------VVDVFIPKPFRAFAFVTFADD   58 (89)
T ss_dssp             --CCEEEEESCCTTCCH-----HHHHHHHTTTSC-------------------------EEEEECCSSCCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHhccCC-------------------------EEEEEEeeCCCCEEEEEECCH
Confidence            34679999999987654     456788886655                         4444433 3567899999999


Q ss_pred             HHHHHHHHHhcCCc--cCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSV--FASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~--f~g~~lrIyFAq~  141 (238)
                      ++|.+    +++..  +.|..++|.+|++
T Consensus        59 ~~A~~----~~~~~~~~~g~~v~v~~a~~   83 (89)
T 3d2w_A           59 KVAQS----LCGEDLIIKGISVHISNAEP   83 (89)
T ss_dssp             HHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred             HHHHH----HcCCCcccCCEEEEEEEcCC
Confidence            99983    44544  4577888888876

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=97.73  E-value=7.4e-05  Score=60.10  Aligned_cols=74  Identities=12%  Similarity=0.193  Sum_probs=55.3

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      .+|+|.||+..+-.     +.|+.+|++|                         |.+..+..++.      .|-++|.|.
T Consensus       105 ~~l~V~nLp~~~t~-----~~l~~~F~~~-------------------------G~i~~v~i~~~~~~g~~~g~afV~F~  154 (196)
T 1l3k_A          105 KKIFVGGIKEDTEE-----HHLRDYFEQY-------------------------GKIEVIEIMTDRGSGKKRGFAFVTFD  154 (196)
T ss_dssp             SEEEEECCTTTCCH-----HHHHHHHTTT-------------------------SCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred             ceEEEeCCCCCCCH-----HHHHHHHhcC-------------------------CCeEEEEEeecCCCCCccceEEEEEC
Confidence            69999999976543     4566788855                         44555544432      345999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      +.++|.+|... ++..|.|..++|.||.+..
T Consensus       155 ~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~  184 (196)
T 1l3k_A          155 DHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ  184 (196)
T ss_dssp             SHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred             CHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence            99999999987 6888999999999998743

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=97.72  E-value=7.1e-05  Score=60.20  Aligned_cols=73  Identities=14%  Similarity=0.102  Sum_probs=56.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +..+...+      +.|-++|.|
T Consensus        13 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~g~~~g~afV~f   62 (196)
T 1l3k_A           13 LRKLFIGGLSFETTD-----ESLRSHFEQWGT-------------------------LTDCVVMRDPNTKRSRGFGFVTY   62 (196)
T ss_dssp             GGEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhCCC-------------------------EEEEEEEEcCCCCCccceEEEEe
Confidence            359999999986644     356678885554                         54444443      235799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|+.. ++..+.|..+++.++..
T Consensus        63 ~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~   91 (196)
T 1l3k_A           63 ATVEEVDAAMNA-RPHKVDGRVVEPKRAVS   91 (196)
T ss_dssp             SSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence            999999999977 77889999999999876

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.67  E-value=0.00013  Score=62.91  Aligned_cols=74  Identities=19%  Similarity=0.178  Sum_probs=58.4

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcC-CCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFG-KPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF  111 (238)
                      ..+|+|.||+..+-.     +.|+.+|++|| ++                         ..+...+     +-|-++|.|
T Consensus       117 ~~~l~v~nlp~~~t~-----~~l~~~f~~~G~~i-------------------------~~v~i~~~~~~~~~g~afV~f  166 (292)
T 2ghp_A          117 ECTLWMTNFPPSYTQ-----RNIRDLLQDINVVA-------------------------LSIRLPSLRFNTSRRFAYIDV  166 (292)
T ss_dssp             SCEEEEECCCTTCCH-----HHHHHHHHHTTCCC-------------------------CEEECC-------CCEEEEEC
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHHhCCCe-------------------------EEEEEEeCCCCCcceEEEEEE
Confidence            469999999986533     45778888666 54                         3333332     456799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|+..|++..+.|..++|.|+.+
T Consensus       167 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  196 (292)
T 2ghp_A          167 TSKEDARYCVEKLNGLKIEGYTLVTKVSNP  196 (292)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence            999999999999999999999999999876

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=4.6e-05  Score=60.13  Aligned_cols=77  Identities=13%  Similarity=0.101  Sum_probs=55.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCc--eEEEecC---CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKP--KSFQYLK---SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i--v~fv~Lk---SF~RiiVVF~  112 (238)
                      +.+|+|.||+-.+-+     +.|+.+|++||+|.                     +.+  +.+..=+   +.|=++|.|.
T Consensus        23 ~~~v~V~nLp~~~te-----~dl~~~F~~~g~v~---------------------g~v~~v~i~~d~~gr~~G~aFV~F~   76 (123)
T 2dha_A           23 QVIVRMRGLPFTATA-----EEVVAFFGQHCPIT---------------------GGKEGILFVTYPDGRPTGDAFVLFA   76 (123)
T ss_dssp             CCEEEECSCCTTCCH-----HHHHHHHHTTSCCT---------------------TGGGGEEEEECTTSCEEEEEEECCS
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhhCCcc---------------------CCcceEEEEECCCCCEeeEEEEEEC
Confidence            579999999976544     45678899787642                     112  2232222   2345999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|... ++..+.+..++|..+..
T Consensus        77 ~~~~A~~Al~~-~~~~l~gR~i~V~~a~~  104 (123)
T 2dha_A           77 CEEYAQNALRK-HKDLLGKRYIELFRSTA  104 (123)
T ss_dssp             SHHHHHHHHTT-TTEESSSCEECCEEECH
T ss_pred             CHHHHHHHHHh-CCCeeCCeEEEEEECCH
Confidence            99999999986 88888888898888754

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.63  E-value=5e-05  Score=54.78  Aligned_cols=72  Identities=11%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-CCCeEEEEeCCHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-SFRRMRVNYESSAA  116 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-SF~RiiVVF~~~ea  116 (238)
                      .+||||.||+..+-+     +.|+.+|++||+                         +..+...+ +.+-++|.|.+.++
T Consensus         5 ~~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~afV~f~~~~~   54 (88)
T 1wf0_A            5 SSGVFVGRCTGDMTE-----DELREFFSQYGD-------------------------VMDVFIPKPFRAFAFVTFADDQI   54 (88)
T ss_dssp             CCEEEEESCCSSSCH-----HHHHHHSTTTSC-------------------------CCEEECCSSCCSCCEEECSCHHH
T ss_pred             CcEEEEeCCCCCCCH-----HHHHHHHHHcCC-------------------------eeEEEEecCCCCEEEEEECCHHH
Confidence            579999999987554     456688886655                         44444443 45679999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+|..  ....+.+..++|.++++
T Consensus        55 a~~~~~--~~~~~~g~~l~v~~a~~   77 (88)
T 1wf0_A           55 AQSLCG--EDLIIKGISVHISNAEP   77 (88)
T ss_dssp             HHHTTT--CEEEETTEEEEEECCCC
T ss_pred             HHHHhc--CCceeCCEEEEEEecCC
Confidence            975321  12345777888888876

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.61  E-value=0.0001  Score=55.52  Aligned_cols=73  Identities=10%  Similarity=0.130  Sum_probs=54.5

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEe
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNY  111 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF  111 (238)
                      -+.+|+|.||+..+-+     +.|+++|++||                          ++.+..++     +.+-++|.|
T Consensus        14 ~~~~l~V~nLp~~~te-----~~l~~~F~~~G--------------------------~~~v~i~~d~~g~~~G~afV~F   62 (102)
T 1wez_A           14 TGHCVHMRGLPYRATE-----NDIYNFFSPLN--------------------------PMRVHIEIGPDGRVTGEADVEF   62 (102)
T ss_dssp             SSCEEEEESCCTTCCH-----HHHHHSSCSCC--------------------------CSEEEEEESSSSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHHcC--------------------------ceEEEEEECCCCCEeeEEEEEE
Confidence            3569999999976544     45667888664                          22333322     234599999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|. .+++..+.++.++|..+..
T Consensus        63 ~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~   91 (102)
T 1wez_A           63 ATHEDAVAAM-AKDKANMQHRYVELFLNST   91 (102)
T ss_dssp             SSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred             CCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence            9999999999 5799999999999998876

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=97.60  E-value=0.00023  Score=59.65  Aligned_cols=114  Identities=16%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             cccccCCCCCCCcEEEecCC-----CCCCCChHHHHHHHHHHhhcCCC---c----chhhhhh-hHHHHHHHHhhhhcCC
Q psy258           28 LDDLINDEQLPKSLIITNLN-----PDLFKDDALKEQIETLLSQFGKP---K----SFQYLKN-DALKEQIETLLSQFGK   94 (238)
Q Consensus        28 ~~~~~~~~~~p~TLiitnL~-----~~vf~~~~l~~~l~~lF~~~g~~---~----~~~~~~~-~~~~~~~~~~~~~~~~   94 (238)
                      +-+-..-..+|+.+++.|=.     ......+.+++.|+.+...-...   +    .+.+..+ +.+.+.+++.+++||.
T Consensus        76 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~  155 (222)
T 3dxb_A           76 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGA  155 (222)
T ss_dssp             TGGGGTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCSCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSC
T ss_pred             HHHHcCCCcCCEEEEEECCeEEEEeccccChHHHHHHHHhhccccccccccchhhcCCCHHHHHHHHHHHHHHHHHccCC
Confidence            33344556778777765421     11233456777777766532221   1    2223333 5677788888899999


Q ss_pred             ceEEEec----------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258           95 PKSFQYL----------KSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus        95 iv~fv~L----------kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++...          ++.|.++|.|.+.++|.+|...|+|..|.|+.+++.|...
T Consensus       156 v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~  212 (222)
T 3dxb_A          156 VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ  212 (222)
T ss_dssp             EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred             eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence            9998876          5678999999999999999999999999999999999753

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=0.00023  Score=54.04  Aligned_cols=70  Identities=9%  Similarity=0.091  Sum_probs=50.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---------CCCCeEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---------KSFRRMR  108 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---------kSF~Rii  108 (238)
                      ..+|||.||+..+-+     +.|+.+|++||+                         +. ...+         ++.|-++
T Consensus         8 ~~~lfVgnLp~~~te-----~~L~~~F~~~G~-------------------------i~-~~~~~~~~~~~~g~~~G~aF   56 (114)
T 2dnl_A            8 SRKVFVGGLPPDIDE-----DEITASFRRFGP-------------------------LV-VDWPHKAESKSYFPPKGYAF   56 (114)
T ss_dssp             CCCEEEECCCTTCCH-----HHHHHHTTTTCC-------------------------CC-EECTTSSSSCCCSCTTSEEE
T ss_pred             CCEEEEcCCCCCCCH-----HHHHHHHHhcCC-------------------------EE-EEEeecCCCCCCCCcccEEE
Confidence            579999999986644     456788886655                         44 2222         3456799


Q ss_pred             EEeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          109 VNYESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      |.|.+.++|.+|...|++  ++|+.+.+..+.
T Consensus        57 V~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~   86 (114)
T 2dnl_A           57 LLFQEESSVQALIDACLE--EDGKLYLCVSSP   86 (114)
T ss_dssp             ECCSSHHHHHHHHHHSEE--ETTEEEEEECCS
T ss_pred             EEECCHHHHHHHHHhhhh--cCCcEEEeccCC
Confidence            999999999999999854  667666555433

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=97.50  E-value=0.00022  Score=60.04  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC----CCeEEEEeCCH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS----FRRMRVNYESS  114 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS----F~RiiVVF~~~  114 (238)
                      ++|+|.||+..+-.     +.|+.+|++||.+.                       ...+..++.    -+-++|.|.+.
T Consensus       124 ~~l~v~NLp~~~t~-----~~L~~~F~~~G~v~-----------------------~~~v~~~~~~~~~~g~gfV~f~~~  175 (205)
T 3tyt_A          124 NVLHFFNAPLEVTE-----ENFFEICDELGVKR-----------------------PTSVKVFSGKSERSSSGLLEWDSK  175 (205)
T ss_dssp             SEEEEEEECTTCCH-----HHHHHHHHHHTCCC-----------------------CSEEEECSCCSSSSEEEEEECSSH
T ss_pred             ceEEEeCCCCCCCH-----HHHHHHHHhcCCcc-----------------------eEEEEEEcCCCCCceEEEEEeCCH
Confidence            48999999986543     45678888776641                       144444443    25799999999


Q ss_pred             HHHHHHHHHhcCCccCCc
Q psy258          115 AAAAKARINLHQSVFASS  132 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~  132 (238)
                      ++|.+|...|++..+.|.
T Consensus       176 ~~A~~Ai~~lng~~~~g~  193 (205)
T 3tyt_A          176 SDALETLGFLNHYQMKNP  193 (205)
T ss_dssp             HHHHHHHHHHTTCEECCS
T ss_pred             HHHHHHHHHhCCCCccCC
Confidence            999999999999988774

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.44  E-value=0.00047  Score=52.53  Aligned_cols=59  Identities=17%  Similarity=0.214  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-CCCCeEEEEeCCHHHHHHHHHHhcCCccCCcce
Q psy258           56 LKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-KSFRRMRVNYESSAAAAKARINLHQSVFASSKI  134 (238)
Q Consensus        56 l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-kSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~l  134 (238)
                      -.+.|+.+|++||+|                         ..+... ++.|-++|.|.+.++|..|...+++  +.+++|
T Consensus        30 te~~L~~~F~~~G~V-------------------------~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l   82 (100)
T 2d9o_A           30 SKDVLLRLLQKYGEV-------------------------LNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL   82 (100)
T ss_dssp             CHHHHHHHHHTTSCE-------------------------EEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred             CHHHHHHHHHhcCCE-------------------------EEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence            356788889866554                         444433 5667899999999999999998655  567899


Q ss_pred             EEEEeCC
Q psy258          135 NVYFVQP  141 (238)
Q Consensus       135 rIyFAq~  141 (238)
                      +|.|++.
T Consensus        83 ~V~~a~~   89 (100)
T 2d9o_A           83 KISWLEG   89 (100)
T ss_dssp             EEECSSC
T ss_pred             EEEEccC
Confidence            9999887

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.38  E-value=0.00062  Score=52.33  Aligned_cols=71  Identities=8%  Similarity=0.105  Sum_probs=54.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYES  113 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~  113 (238)
                      .+|+|.||+..+-+     +.|+.+|++|                          .+..+..++     +.|=++|.|.+
T Consensus        17 ~~v~V~nLp~~~te-----~dl~~~F~~~--------------------------~v~~v~i~~d~~g~~~G~afV~F~~   65 (109)
T 2dnn_A           17 LYVSVHGMPFSAME-----NDVRDFFHGL--------------------------RVDAVHLLKDHVGRNNGNGLVKFLS   65 (109)
T ss_dssp             HEEEEECCCSSCCH-----HHHHHHTTTS--------------------------CCCEEEECCCTTCCCCSEEEEECSS
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHhccC--------------------------CeeEEEEEECCCCCCCeEEEEEECC
Confidence            39999999976544     3456777744                          344444442     44669999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|.+|. .+++..+.|+.++|..+..
T Consensus        66 ~~~a~~Al-~~~~~~~~gr~i~V~~a~~   92 (109)
T 2dnn_A           66 PQDTFEAL-KRNRMLMIQRYVEVSPATE   92 (109)
T ss_dssp             HHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred             HHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence            99999998 7899999999999987653

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=97.36  E-value=0.00041  Score=54.24  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .+|||.|||..+-+     +.|+.+|++||                         .+.++...+      +.|-++|.|.
T Consensus         4 ~~l~v~nLp~~~t~-----~~l~~~F~~~G-------------------------~i~~v~i~~~~~~g~~~g~afV~f~   53 (167)
T 2cjk_A            4 CKMFIGGLNWDTTE-----DNLREYFGKYG-------------------------TVTDLKIMKDPATGRSRGFGFLSFE   53 (167)
T ss_dssp             GEEEECSCCTTCCH-----HHHHHHHTTTC-------------------------CEEEEECCCCTTTSSCCSCEEEEES
T ss_pred             cEEEEeCCCCCCCH-----HHHHHHHHhCC-------------------------CEEEEEEEECCCCCCccceEEEEEc
Confidence            69999999987644     35667888555                         455555443      3467999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...  +..+.|+.+++.++.+
T Consensus        54 ~~~~a~~A~~~--~~~~~g~~i~v~~~~~   80 (167)
T 2cjk_A           54 KPSSVDEVVKT--QHILDGKVIDPKRAIP   80 (167)
T ss_dssp             STHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred             cHHHHHHHHhc--ccccCCeEcccccccc
Confidence            99999999985  4567888888877654

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=97.34  E-value=0.0002  Score=57.61  Aligned_cols=73  Identities=11%  Similarity=0.165  Sum_probs=55.9

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-----CCCCeEEEEe
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-----KSFRRMRVNY  111 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-----kSF~RiiVVF  111 (238)
                      -..+|+|.||+..+-+     +.|+++|++||                          ++.+..+     ++.+=++|.|
T Consensus        45 ~~~~lfV~nLp~~~te-----~dL~~~F~~~G--------------------------i~~v~i~~d~~g~srGfaFV~F   93 (139)
T 2hgn_A           45 TGHCVHMRGLPYKATE-----NDIYNFFSPLN--------------------------PVRVHIEIGPDGRVTGEADVEF   93 (139)
T ss_dssp             CCCCEECCSCCTTCCH-----HHHHHHHCSCC--------------------------CSEEECCCSSSSCSSCCCEEEC
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHhcC--------------------------CeEEEEEECCCCCCceEEEEEe
Confidence            3469999999986544     45678888664                          3333333     2345699999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|. .+++..+.++.++|..+..
T Consensus        94 ~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~  122 (139)
T 2hgn_A           94 ATHEEAVAAM-SKDRANMQHRYIELFLNST  122 (139)
T ss_dssp             SHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred             CCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence            9999999999 8899999999999988776

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=97.33  E-value=0.00031  Score=58.80  Aligned_cols=72  Identities=18%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYES  113 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~  113 (238)
                      .||||.|||..+-     .+.|+.+|++||+|                         ..+...+     +.|-++|.|.+
T Consensus       110 ~~l~V~nLp~~~t-----~~~L~~~F~~~G~v-------------------------~~v~i~~~~~~~~kG~aFVeF~~  159 (193)
T 2voo_A          110 RSVYIKGFPTDAT-----LDDIKEWLEDKGQV-------------------------LNIQMRRTLHKAFKGSIFVVFDS  159 (193)
T ss_dssp             TEEEEECCCTTCC-----HHHHHHHHTTSCCE-------------------------EEEEEEECTTCCEEEEEEEEESS
T ss_pred             CEEEecCCCCcCC-----HHHHHHHHhcCCCE-------------------------EEEEEEECCCCCcccEEEEEECC
Confidence            5899999997543     35677889977654                         3333332     33569999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|..|...+.. .|.|+.++|.+++.
T Consensus       160 ~e~A~~A~~~~~~-~~~Gr~l~V~~~~~  186 (193)
T 2voo_A          160 IESAKKFVETPGQ-KYKETDLLILFKDD  186 (193)
T ss_dssp             HHHHHHHHHCTTC-EETTEECEEEETTT
T ss_pred             HHHHHHHHHhCCC-eECCEEEEEEEhHH
Confidence            9999999976654 79999999988654

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=97.29  E-value=0.00082  Score=62.01  Aligned_cols=76  Identities=14%  Similarity=0.238  Sum_probs=55.5

Q ss_pred             CCC-CcEEEecCC--CCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeC
Q psy258           36 QLP-KSLIITNLN--PDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYE  112 (238)
Q Consensus        36 ~~p-~TLiitnL~--~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~  112 (238)
                      .-| ++|||.|+.  -.+-     .+.|+++|++|                         |.+.++...++.+-++|.|.
T Consensus        15 ~~ps~~l~VgN~gl~~~~t-----e~~L~~~F~~~-------------------------G~V~~v~~~~~kgfaFV~f~   64 (345)
T 3tht_A           15 SYATQSLVVANGGLGNGVS-----RNQLLPVLEKC-------------------------GLVDALLMPPNKPYSFARYR   64 (345)
T ss_dssp             SSCCSEEEEETCSGGGTCC-----HHHHHHHHHTT-------------------------SCEEEEECCTTCSEEEEEES
T ss_pred             CCCCCEEEEEcCCCCCCCC-----HHHHHHHHHhc-------------------------CCeEEEEEeCCCCEEEEEEC
Confidence            334 499999964  3333     34567788855                         55556666667789999999


Q ss_pred             CHHHHHHHHHHhcCCccC---Cc--ceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFA---SS--KINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~---g~--~lrIyFAq~  141 (238)
                      +.++|++|...|+|..+.   |.  .+.+.|++.
T Consensus        65 ~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~   98 (345)
T 3tht_A           65 TTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK   98 (345)
T ss_dssp             SHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred             CHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence            999999999999998653   33  467777754

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=97.20  E-value=0.00067  Score=58.30  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeC
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYE  112 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~  112 (238)
                      .++|+|.||+..+-.     +.|+.+|++||+                         +..+..++     +-|-++|.|.
T Consensus        96 ~~~l~v~nl~~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~g~~~g~afV~f~  145 (261)
T 3sde_A           96 GAALTVKNLSPVVSN-----ELLEQAFSQFGP-------------------------VEKAVVVVDDRGRATGKGFVEFA  145 (261)
T ss_dssp             SSEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEEETTSCEEEEEEEEES
T ss_pred             CCcccccCCCCCCCH-----HHHHHHHHhcCC-------------------------eEEEEeeeCCCCCcCcEEEEEeC
Confidence            469999999976533     457788886655                         44444432     2456999999


Q ss_pred             CHHHHHHHHHHhcCC-ccC---CcceEEEEeCCC
Q psy258          113 SSAAAAKARINLHQS-VFA---SSKINVYFVQPM  142 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~-~f~---g~~lrIyFAq~~  142 (238)
                      +.++|.+|...|++. .+.   +.+++|.++...
T Consensus       146 ~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~  179 (261)
T 3sde_A          146 AKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF  179 (261)
T ss_dssp             SHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred             CHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence            999999999999553 333   788999998763

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.00019  Score=58.69  Aligned_cols=75  Identities=13%  Similarity=0.224  Sum_probs=51.6

Q ss_pred             CCCcEEEecC----CCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCe
Q psy258           37 LPKSLIITNL----NPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRR  106 (238)
Q Consensus        37 ~p~TLiitnL----~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~R  106 (238)
                      +|+.|||+||    +..+=+     ..|+++|++||.|.                         ++...      ++.|=
T Consensus         1 mp~kI~VgnL~~~~~~~tte-----~~Lk~~Fs~fGeV~-------------------------~~~li~Dp~Tg~slGf   50 (136)
T 2j8a_A            1 MSCEIVVYPAQDSTTTNIQD-----ISIKNYFKKYGEIS-------------------------HFEAFNDPNSALPLHV   50 (136)
T ss_dssp             -CCEEEEEESSSSCCCCCCH-----HHHHHHHHTTSCCS-------------------------EEEEEECTTTCCEEEE
T ss_pred             CCcEEEEeCCCCCCCCCCCH-----HHHHHHHHhcCCeE-------------------------EEEEEecCCCCceeeE
Confidence            4789999999    654433     45778899676654                         33332      35667


Q ss_pred             EEEEeCC-----HHH---HHHHHH--HhcCCccCCcceEEEEeCC
Q psy258          107 MRVNYES-----SAA---AAKARI--NLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       107 iiVVF~~-----~ea---A~~Ar~--~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|.|.+     .++   |.+|..  .+++..+.|..+||.+-+.
T Consensus        51 gfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~   95 (136)
T 2j8a_A           51 YLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH   95 (136)
T ss_dssp             EEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred             EEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence            9999996     333   566655  5788889999999998543

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0025  Score=50.74  Aligned_cols=73  Identities=18%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             CCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhc-----CCceEEEecCCCCeEEE
Q psy258           35 EQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQF-----GKPKSFQYLKSFRRMRV  109 (238)
Q Consensus        35 ~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~iv~fv~LkSF~RiiV  109 (238)
                      .+.+.||-+=|||+.+-. .                             +|+++++.|     |++..++--+..+=++|
T Consensus        18 ~~~~rtiaL~~ipDtvnd-a-----------------------------rIr~lve~~~~i~~g~i~KI~L~pDH~GAiv   67 (117)
T 2l9w_A           18 KELETLICLFPLSDKVSP-S-----------------------------LICQFLQEEIHINEKDIRKILLVSDFNGAII   67 (117)
T ss_dssp             TTTTSCEEEECCCTTCCH-H-----------------------------HHHHHHHHHTCCCTTTCSEEEEETTTTEEEE
T ss_pred             ccCCcEEEEecCCCCCCH-H-----------------------------HHHHHHhhhhccCccceeEEEEecCCCceEE
Confidence            356789999999987654 2                             233444567     89999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEE
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVY  137 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIy  137 (238)
                      .|.|..+|.+|...|+|..|.|+.+||.
T Consensus        68 ef~d~~~AgKasLaL~G~ef~gr~Lr~g   95 (117)
T 2l9w_A           68 IFRDSKFAAKMLMILNGSQFQGKVIRSG   95 (117)
T ss_dssp             ECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred             EEccchhhHHHHhhcCCeeecCeEEEec
Confidence            9999999999999999999999888875

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=97.07  E-value=0.0011  Score=52.59  Aligned_cols=72  Identities=19%  Similarity=0.133  Sum_probs=53.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCce--EEEec-----CCCCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPK--SFQYL-----KSFRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv--~fv~L-----kSF~RiiVV  110 (238)
                      ..+|+|.||+..+-+     +.|+.+|++|                          .++  .+...     ++.|=++|.
T Consensus        42 ~~~lfVgnLp~~~te-----~dL~~~F~~~--------------------------~i~~~~v~i~~d~~GrsrGfaFV~   90 (126)
T 2hgm_A           42 DGFVRLRGLPFGCTK-----EEIVQFFSGL--------------------------EIVPNGITLPVDPEGKITGEAFVQ   90 (126)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHTTTS--------------------------CEEEEEEECCCCSSSSSCSEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHhcC--------------------------CceeeEEEEEECCCCCCceEEEEE
Confidence            369999999986554     3566777744                          344  44433     234669999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|... ++..+.|+.++|..+..
T Consensus        91 F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~  120 (126)
T 2hgm_A           91 FASQELAEKALGK-HKERIGHRYIEVFKSSQ  120 (126)
T ss_dssp             ESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred             ECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence            9999999999985 66889999999988753

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.30  E-value=0.28  Score=38.74  Aligned_cols=72  Identities=11%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             CCCC--cEEEecCCCC-CCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeC
Q psy258           36 QLPK--SLIITNLNPD-LFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYE  112 (238)
Q Consensus        36 ~~p~--TLiitnL~~~-vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~  112 (238)
                      ++|.  -|+|.||+.. +-     .+.|+++|++|                         |++..+.+.+.-.-.+|-|.
T Consensus        14 ~~~~G~il~v~~l~~~~~s-----redLke~F~~~-------------------------G~V~~Vd~~~g~~tgfVrf~   63 (121)
T 1owx_A           14 EEKIGCLLKFSGDLDDQTC-----REDLHILFSNH-------------------------GEIKWIDFVRGAKEGIILFK   63 (121)
T ss_dssp             SCCCCCEEEEEESCCSSCC-----HHHHHHHTCSS-------------------------CCEEEEECCTTCSEEEEEES
T ss_pred             cccCCeEEEEecCCCCcCC-----HHHHHHHHHhc-------------------------CCEEEEEEecCCCEEEEEEC
Confidence            4454  7889999876 33     45667778855                         44444444454445999999


Q ss_pred             C-HHHHHHHHHHhc--CCccCCcceEEE
Q psy258          113 S-SAAAAKARINLH--QSVFASSKINVY  137 (238)
Q Consensus       113 ~-~eaA~~Ar~~L~--~~~f~g~~lrIy  137 (238)
                      + .++|..|...++  +..+.+..+++-
T Consensus        64 ~~~~~A~~av~~ln~~~~~i~g~~~~~e   91 (121)
T 1owx_A           64 EKAKEALGKAKDANNGNLQLRNKEVTWE   91 (121)
T ss_dssp             SCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred             CChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence            9 788888888884  456777655543

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.12  E-value=0.63  Score=36.21  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=48.1

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      .-.++.|+||++.+-. +    .|+-.|..=                    -.+-=|++..+.+++  +.++|.|.+.+.
T Consensus         7 ~~~~I~V~~lPp~~~~-e----~L~LYFEn~--------------------rrsGGG~V~~v~~~~--~~AvItF~d~~v   59 (104)
T 2dhx_A            7 GGVAVEVRGLPPAVPD-E----LLTLYFENR--------------------RRSGGGPVLSWQRLG--CGGVLTFREPAD   59 (104)
T ss_dssp             CCCEEEEESCCTTSCH-H----HHHHHHHCT--------------------TTTCCCCEEEEEEET--TEEEEEESSHHH
T ss_pred             CccEEEEECCCCCCCh-h----HheEEEeCC--------------------CcCCCceeeEEEEcC--CcEEEEEcChHH
Confidence            3469999999987632 2    333334420                    000126888999999  999999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEE
Q psy258          117 AAKARINLHQSVFASSKINVY  137 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIy  137 (238)
                      |.++...- ...|++.++.|+
T Consensus        60 a~rVL~k~-~H~L~~~~LsV~   79 (104)
T 2dhx_A           60 AERVLAQA-DHELHGAQLSLR   79 (104)
T ss_dssp             HHHHHTCS-CCBSSSSBCEEE
T ss_pred             HHHHhcCC-cceecCeEEEEE
Confidence            98765431 234676666663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d1weya_	104	d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)	3e-13
d2cqba1	89	d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer	9e-04

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.1 bits (150), Expect = 3e-13
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 32/131 (24%)

Query: 38  PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKS 97
              LI    N D+F +   + + E+L   + K  +FQY K+                   
Sbjct: 5   SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------------------- 45

Query: 98  FQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAP 157
                 F+R+R+N+ +  +AA AR+ LH++ F   ++ +YF Q +        HL PP P
Sbjct: 46  ------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHI---GSSHLAPPNP 96

Query: 158 TKQFLISPPSS 168
            K    S PSS
Sbjct: 97  DK----SGPSS 103

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 9e-04
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 76  LKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYESSAAAAKARINLHQSVF 129
           L  +   + +      FG     Q               V +E +  AA A  N+++S  
Sbjct: 13  LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 72

Query: 130 ASSKINVYFVQPMTP 144
               I V   +PM  
Sbjct: 73  FGRTIRVNLAKPMRI 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.81
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.09
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.0
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	98.98
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.97
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.93
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.9
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.88
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.87
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.87
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	98.86
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.85
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.84
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.83
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.81
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.8
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.8
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.79
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.79
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.78
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	98.78
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.77
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.76
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	98.76
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.76
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	98.75
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	98.73
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.7
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.7
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	98.69
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.68
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	98.67
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	98.66
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	98.63
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.62
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.62
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.61
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.6
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.59
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	98.59
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.58
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.58
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.58
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	98.57
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.56
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.54
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.51
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	98.5
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	98.5
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.49
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.49
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	98.47
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.47
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.46
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.44
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.42
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.41
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	98.39
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	98.36
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.3
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.29
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.28
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	98.22
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	98.21
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.2
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	98.17
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.16
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	98.15
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	98.13
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	98.1
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.09
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	98.05
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.96
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.9
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.9
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	97.85
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.82
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	97.78
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	97.74
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	97.73
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	97.71
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.55
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.54
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.42
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	96.8
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.6
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	95.38
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	95.33

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=4.1e-20  Score=141.76  Aligned_cols=99  Identities=37%  Similarity=0.718  Sum_probs=90.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|||+||++++|..+.++++|+.||+                         .||.++++..+|++++++|.|.+.++|
T Consensus         5 ~~~L~v~nl~~~v~~~d~~k~~l~~lF~-------------------------~~G~i~~~~~~k~~~~afV~f~~~~~A   59 (104)
T d1weya_           5 SSGLIACVANDDVFSESETRAKFESLFR-------------------------TYDKDTTFQYFKSFKRVRINFSNPLSA   59 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHH-------------------------TTCSSCEEEEETTTTEEEEECSSTTHH
T ss_pred             CceEEEEeCCchhcCcHHHHHHHHHHhc-------------------------ccccceEEEEecCCCEEEEEECCHHHH
Confidence            5799999999999999999999999999                         557788999999999999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCCCCCCCCCCccCCCCCCcceeeCCCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPMTPFDSADQHLQPPAPTKQFLISPPSS  168 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t~~~~~~~~L~~P~~~K~FLISPP~S  168 (238)
                      .+|+..|++..|+|+.|+|+||++...   .+.++++|.+.+    |||+|
T Consensus        60 ~~Ai~~lng~~~~g~~l~v~~a~~~~~---~~~~~~pP~~~~----sPP~s  103 (104)
T d1weya_          60 ADARLRLHKTEFLGKEMKLYFAQTLHI---GSSHLAPPNPDK----SGPSS  103 (104)
T ss_dssp             HHHHHTSTTSEETTEECEEECCCCSSC---CSCCSCCCCCCC----CCCCC
T ss_pred             HHHHHHhcccccCCCEeEEeecccCCC---CCcccCCCCCCC----CccCC
Confidence            999999999999999999999987433   577899999887    68776

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.7e-10  Score=84.46  Aligned_cols=79  Identities=19%  Similarity=0.313  Sum_probs=66.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESSA  115 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~e  115 (238)
                      +||||.|||..+-. ++|++.|+.+|++||++                         ..+...+   +.|-++|.|.+.+
T Consensus         4 ~tl~V~nLp~~~t~-~dl~~~l~~~f~~~G~i-------------------------~~i~~~~~~~~~g~afV~F~~~~   57 (91)
T d1nu4a_           4 HTIYINNLNEKIKK-DELKKSLHAIFSRFGQI-------------------------LDILVSRSLKMRGQAFVIFKEVS   57 (91)
T ss_dssp             SEEEEESCCTTSCH-HHHHHHHHHHHGGGSCE-------------------------EEEECCHHHHHTTCEEEEESSHH
T ss_pred             CEEEEeCCCCCCCH-HHHHHHHHHHhcccccc-------------------------cceEEeeeccCCCceEEEECCHH
Confidence            49999999988766 78999999999977664                         3333322   3467999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      +|..|+..+++..|.|+.++|.||++.+
T Consensus        58 ~A~~A~~~~~~~~~~g~~l~v~~ak~~~   85 (91)
T d1nu4a_          58 SATNALRSMQGFPFYDKPMRIQYAKTDS   85 (91)
T ss_dssp             HHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred             HHHHHHHHhCCCEECCEEEEEEEeCCCc
Confidence            9999999999999999999999998744

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1e-09  Score=79.49  Aligned_cols=75  Identities=21%  Similarity=0.299  Sum_probs=58.2

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      +||+|+||+..+=+     +.|+.+|++||++.                       .+.+..=++.+-++|.|.+.++|.
T Consensus        11 ~tL~V~NLp~~~te-----~~l~~~F~~~G~v~-----------------------~~~~~~~~~~~~afV~f~~~~~A~   62 (88)
T d2adca2          11 ATLHLSNIPPSVSE-----EDLKVLFSSNGGVV-----------------------KGFKFFQKDRKMALIQMGSVEEAV   62 (88)
T ss_dssp             SEEEEECCCTTCCH-----HHHHHHHHTTSCCE-----------------------EEEEECSSSTTCEEEEESSHHHHH
T ss_pred             CEEEEECCCCCCCH-----HHHHHHhhccCCEE-----------------------EEEEeeecccceeEEEECCHHHHH
Confidence            49999999987543     35668888676644                       112222245678999999999999


Q ss_pred             HHHHHhcCCccC-CcceEEEEeCC
Q psy258          119 KARINLHQSVFA-SSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~-g~~lrIyFAq~  141 (238)
                      +|+..|++..+. |..|+|.||++
T Consensus        63 ~A~~~l~~~~i~~g~~l~v~~sk~   86 (88)
T d2adca2          63 QALIDLHNHDLGENHHLRVSFSKS   86 (88)
T ss_dssp             HHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             HHHHhccCCEecCCCEEEEEeCCC
Confidence            999999999875 78999999986

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.98  E-value=2.8e-10  Score=81.21  Aligned_cols=73  Identities=18%  Similarity=0.355  Sum_probs=58.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      +||||.|||..+-+     +.|+.+|++||+                         +..+...+      +.+-++|.|.
T Consensus         3 t~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------v~~~~i~~~~~~g~~~g~afV~f~   52 (82)
T d1b7fa1           3 TNLIVNYLPQDMTD-----RELYALFRAIGP-------------------------INTCRIMRDYKTGYSYGYAFVDFT   52 (82)
T ss_dssp             SEEEEECCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEECCEETTTTEECSEEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHHhCC-------------------------cceeeeeeecccCCccccceEEEC
Confidence            68999999987654     346678886655                         44443332      2346999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|.+.|++..+.|+.|+|.||++
T Consensus        53 ~~~~A~~ai~~lng~~~~g~~l~v~~a~p   81 (82)
T d1b7fa1          53 SEMDSQRAIKVLNGITVRNKRLKVSYARP   81 (82)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            99999999999999999999999999986

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-09  Score=79.24  Aligned_cols=81  Identities=22%  Similarity=0.303  Sum_probs=62.8

Q ss_pred             ccCCCCCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC----CCe
Q psy258           31 LINDEQLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS----FRR  106 (238)
Q Consensus        31 ~~~~~~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS----F~R  106 (238)
                      ||.++.-|.||||.|||..+=+     +.|+.+|++||                         ++..+...+.    -+-
T Consensus         1 mm~d~~~~~tl~V~nLp~~~te-----~~l~~~F~~~G-------------------------~i~~v~i~~d~~~~~~~   50 (90)
T d2cqia1           1 MMEDDGQPRTLYVGNLSRDVTE-----VLILQLFSQIG-------------------------PCKSCKMITEHTSNDPY   50 (90)
T ss_dssp             CCCCSCCCCEEEEESCCTTCCH-----HHHHHHHHHHS-------------------------CEEEEEEECCCCSSCCE
T ss_pred             CCCCCCCCCEEEEECCCCCCCH-----HHHHHHHHhcC-------------------------CceeeeeecccCcccee
Confidence            4455555789999999986544     45667888555                         4555544332    245


Q ss_pred             EEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          107 MRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       107 iiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.|.+.++|.+|...+++..+.|+.|+|.||++
T Consensus        51 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~   85 (90)
T d2cqia1          51 CFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT   85 (90)
T ss_dssp             EEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             eEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            99999999999999999999999999999999976

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5e-09  Score=77.97  Aligned_cols=74  Identities=18%  Similarity=0.265  Sum_probs=60.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAAA  117 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA  117 (238)
                      +||+|.||++.--.    .+.|+.+|+                         .||.+..+..++.- |.++|.|.+.++|
T Consensus         3 ~~l~V~nL~p~~~t----e~~L~~~F~-------------------------~fG~I~~v~i~~~~kg~afV~f~~~~~A   53 (109)
T d2adca1           3 SVLLVSNLNPERVT----PQSLFILFG-------------------------VYGDVQRVKILFNKKENALVQMADGNQA   53 (109)
T ss_dssp             SEEEEESCCTTTCC----HHHHHHHHH-------------------------HHTCEEEEEECCTTSCCEEEEESCHHHH
T ss_pred             CEEEEeCCCcccCC----HHHHHHHHh-------------------------hccccceEEEEecccceEEEEECCHHHH
Confidence            68999999764222    235678888                         55667777777654 5799999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|+..|++..|.|+.|+|.|++.
T Consensus        54 ~~ai~~lng~~l~g~~l~v~~s~~   77 (109)
T d2adca1          54 QLAMSHLNGHKLHGKPIRITLSKH   77 (109)
T ss_dssp             HHHHHHHTTCBCSSSBCEEECCSC
T ss_pred             HHHHHHhCCCEECCEEEEEEECCC
Confidence            999999999999999999999875

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.5e-09  Score=80.48  Aligned_cols=73  Identities=12%  Similarity=0.227  Sum_probs=63.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      .||+|.||+..+-+     +.|+.+|+                         .||++.++...+..|-++|.|.+.++|.
T Consensus        19 ~~l~v~nL~~~~te-----~~L~~~F~-------------------------~fG~i~~v~i~~~kg~afV~f~~~~~A~   68 (96)
T d1x4ga1          19 CTVYCGGIASGLTD-----QLMRQTFS-------------------------PFGQIMEIRVFPEKGYSFVRFSTHESAA   68 (96)
T ss_dssp             CEEEEECCSSCCCH-----HHHHHHHH-------------------------HHSCEEEEEEETTTTEEEEEESSHHHHH
T ss_pred             CEEEEcCCCCCCCH-----HHHHHHHH-------------------------HhCCceEEEEEecceEEEEEECCHHHHH
Confidence            48999999987643     34667788                         5566778888888889999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|+..|++..++|..|+|.||++
T Consensus        69 ~Ai~~l~~~~i~g~~l~v~~ak~   91 (96)
T d1x4ga1          69 HAIVSVNGTTIEGHVVKCYWGKE   91 (96)
T ss_dssp             HHHHHHTTCEETTEECEEECCCC
T ss_pred             HHHHHhCCCEECCEEEEEEEcCC
Confidence            99999999999999999999987

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.88  E-value=7.6e-09  Score=74.16  Aligned_cols=72  Identities=17%  Similarity=0.234  Sum_probs=57.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC-CeEEEEeCCHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF-RRMRVNYESSAAA  117 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF-~RiiVVF~~~eaA  117 (238)
                      +||+|+||+..+-.     +.|+.+|++|                         |++.++..++.- +-++|.|.+.++|
T Consensus         9 ~tl~V~nLp~~~t~-----~~l~~~f~~~-------------------------G~i~~v~~~~~~~g~afV~f~~~~~A   58 (83)
T d2b0ga1           9 QILFLTNLPEETNE-----MMLSMLFNQF-------------------------PGFKEVRLVPNRHDIAFVEFTTELQS   58 (83)
T ss_dssp             SEEEEESCCTTCCH-----HHHHHHHTTS-------------------------TTEEEEEECTTTCSCEEEEESSHHHH
T ss_pred             CEEEEECCCCCCCH-----HHHHhhhccC-------------------------ccEEEeeeecccceeEEEecCCHHHH
Confidence            39999999987644     3566788844                         566666666644 4699999999999


Q ss_pred             HHHHHHhcCCccC-CcceEEEEeC
Q psy258          118 AKARINLHQSVFA-SSKINVYFVQ  140 (238)
Q Consensus       118 ~~Ar~~L~~~~f~-g~~lrIyFAq  140 (238)
                      ..|+..|++..|. |..|+|.||+
T Consensus        59 ~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          59 NAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             HHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             HHHHHHhCCcEeCCCcEEEEEEec
Confidence            9999999998885 5789999986

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.6e-09  Score=73.97  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=61.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .+||||.|++  + .    .+.|+.+|++|                         |++..+...+..+.++|.|.+.++|
T Consensus         5 ~~ti~V~~~~--~-t----e~~L~~~F~~~-------------------------G~I~~v~~~~~~~~afV~f~~~~~A   52 (79)
T d2bz2a1           5 GNTLYVYGED--M-T----PTLLRGAFSPF-------------------------GNIIDLSMDPPRNCAFVTYEKMESA   52 (79)
T ss_dssp             CCEEEEECSS--C-C----HHHHHHHHSTT-------------------------CCCSCEEEETTTTEEEEECSSHHHH
T ss_pred             CCEEEEECCC--C-C----HHHHHHHHhcc-------------------------CccceeeeccCCCEEEEEEcccHHH
Confidence            3699999996  2 2    24677888855                         5566677778889999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ..|...|++..+.|+.|+|.||++
T Consensus        53 ~~Ai~~lng~~~~g~~l~V~~a~~   76 (79)
T d2bz2a1          53 DQAVAELNGTQVESVQLKVNIARK   76 (79)
T ss_dssp             HHHHHHHTTCBCSSCBCEEEECCS
T ss_pred             HHHHHHhCCCEECCEEEEEEEecC
Confidence            999999999999999999999986

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=4.3e-09  Score=78.44  Aligned_cols=73  Identities=18%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      +||||.|||..+-.     +.|+.+|++|                         |++..+..-++.+-++|.|.+.++|.
T Consensus        11 ~~l~V~nLp~~~t~-----~~L~~~F~~f-------------------------G~I~~v~l~~~kg~afV~f~~~~~A~   60 (111)
T d1whxa_          11 TVILAKNLPAGTLA-----AEIQETFSRF-------------------------GSLGRVLLPEGGITAIVEFLEPLEAR   60 (111)
T ss_dssp             EEEEEESCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCSSSSCEEEEESCHHHHH
T ss_pred             CEEEEECCCCCCCH-----HHHHhhhhcc-------------------------CCccEEEeeccCceEEEEEcCHHHHH
Confidence            59999999976444     3466788855                         55666776778889999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|+..|++..|.|+.|+|.|+..
T Consensus        61 ~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          61 KAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             HHHHHHTTCBSSSSBCEEEEEET
T ss_pred             HHHHHHcCCccCCCeEEEEECCC
Confidence            99999999999999999999976

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.7e-09  Score=77.38  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=61.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      +||||.|||..+=.     +.|+.+|++||++.                   ..--...-..-++.+-++|.|.+.++|.
T Consensus        19 ~tl~V~nLp~~~t~-----~~l~~~f~~~G~v~-------------------~~~~~~~~~~g~~~g~~fV~f~~~~~A~   74 (102)
T d2cpxa1          19 KVLYLKNLSPRVTE-----RDLVSLFARFQEKK-------------------GPPIQFRMMTGRMRGQAFITFPNKEIAW   74 (102)
T ss_dssp             SEEEEECCCTTCCH-----HHHHHHTHHHHHSS-------------------SSCCEEEEECSSSCSEEEEECSSHHHHH
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHhhcccee-------------------eEEeecccccccccccceEEeccHHHHH
Confidence            59999999986543     45678999888865                   1111112223356677999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|+..|++..|.|+.|+|.||++
T Consensus        75 ~Ai~~l~g~~~~g~~l~V~~ak~   97 (102)
T d2cpxa1          75 QALHLVNGYKLYGKILVIEFGKN   97 (102)
T ss_dssp             HHHHHSTTCBCSSCBCEEEECCC
T ss_pred             HHHHHhCCCEECCEEEEEEeCCC
Confidence            99999999999999999999987

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.7e-09  Score=74.49  Aligned_cols=73  Identities=25%  Similarity=0.379  Sum_probs=57.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      +||||.|||..+=+     +.|+.+|++||+                         +..+...+      +.|-++|.|.
T Consensus         3 t~l~V~nLp~~~te-----~~l~~~f~~~G~-------------------------v~~v~i~~~~~~~~~~g~afv~f~   52 (82)
T d1fxla1           3 TNLIVNYLPQNMTQ-----EEFRSLFGSIGE-------------------------IESCKLVRDKITGQSLGYGFVNYI   52 (82)
T ss_dssp             SEEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEECTTTCCEEEEEEEEES
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHHHhCC-------------------------cccccceeeccCCCceeeEEEEEC
Confidence            57999999986544     346677886654                         44444432      2235999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|+..|++..|.|+.|+|.||++
T Consensus        53 ~~~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1          53 DPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            99999999999999999999999999987

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=3e-09  Score=75.61  Aligned_cols=73  Identities=19%  Similarity=0.149  Sum_probs=57.3

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~  112 (238)
                      .||||.|||..+=+     +.|+.+|++||.+.                         ....+      ++.|-++|.|.
T Consensus         2 ~tl~v~nLp~~~t~-----~~l~~~f~~~G~v~-------------------------~~~~~~~~~~~~~~g~afV~f~   51 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQ-----RNIRDLLQDINVVA-------------------------LSIRLPSLRFNTSRRFAYIDVT   51 (81)
T ss_dssp             CEEEEECCCTTCCH-----HHHHHHHHHTTCCC-------------------------CEEECC-------CCEEEEECS
T ss_pred             cEEEEECCCCcCCH-----HHHHHHHHHhCcEE-------------------------eeeeecccccccccceeEEEEC
Confidence            38999999987654     35667888776653                         22222      23455999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|.+.|++..|.|+.|+|.||+|
T Consensus        52 ~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P   80 (81)
T d2ghpa1          52 SKEDARYCVEKLNGLKIEGYTLVTKVSNP   80 (81)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            99999999999999999999999999987

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3e-09  Score=78.19  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=58.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---CCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---SFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---SF~RiiVVF~~~  114 (238)
                      ..+|||.|||..+-.     +.|+.+|++||.                         +..+...+   +.+-++|.|.+.
T Consensus        14 ~~~l~V~nLp~~~t~-----~~l~~~F~~~G~-------------------------v~~~~~~~~~~~~g~afV~f~~~   63 (95)
T d1x4aa1          14 DCRIYVGNLPPDIRT-----KDIEDVFYKYGA-------------------------IRDIDLKNRRGGPPFAFVEFEDP   63 (95)
T ss_dssp             SSEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEECCSSSSSCCEEEEESCH
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHhcCCc-------------------------eEEEEecccccccceEEEEECCH
Confidence            358999999987544     356678886655                         44444333   234599999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|..|+..|++..|.|+.|+|.||++
T Consensus        64 e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          64 RDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            999999999999999999999999986

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.3e-08  Score=75.11  Aligned_cols=75  Identities=20%  Similarity=0.295  Sum_probs=63.1

Q ss_pred             CC-CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258           37 LP-KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA  115 (238)
Q Consensus        37 ~p-~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e  115 (238)
                      .| +||||.||+..+-+     +.|+++|+                         .||.+..+...+..+.++|.|.+.+
T Consensus        15 ~Ps~tl~V~nLp~~~t~-----~~l~~~f~-------------------------~~G~i~~~~~~~~~~~afV~f~~~~   64 (97)
T d1whya_          15 NPTTRLWVGGLGPNTSL-----AALAREFD-------------------------RFGSIRTIDHVKGDSFAYIQYESLD   64 (97)
T ss_dssp             CCCSCEEEECCCSSCCH-----HHHHHHHH-------------------------TTSCEEEEEECSSSCCEEEEESSHH
T ss_pred             CCCCEEEEcCCCCCCCH-----HHHHHHHH-------------------------hhcccceEeeeccccEEEeccCCHH
Confidence            45 69999999987533     35667777                         5566778888888899999999999


Q ss_pred             HHHHHHHHhcCCccCC--cceEEEEeCC
Q psy258          116 AAAKARINLHQSVFAS--SKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g--~~lrIyFAq~  141 (238)
                      +|.+|+..|++..|.+  .+++|.||++
T Consensus        65 ~A~~A~~~l~~~~i~g~~~~l~v~~ak~   92 (97)
T d1whya_          65 AAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             HHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             HHHHHHHHhCCCEeCCCceEEEEEeCCC
Confidence            9999999999998876  4799999987

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.4e-08  Score=74.45  Aligned_cols=74  Identities=23%  Similarity=0.111  Sum_probs=58.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC--C----CeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS--F----RRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS--F----~RiiVVF  111 (238)
                      .+||||.|||..+=+     +.|+.+|++||+                         +.++...+.  -    |=++|.|
T Consensus         7 s~tlfV~nlp~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~kg~afV~f   56 (93)
T d1h2vz_           7 SCTLYVGNLSFYTTE-----EQIYELFSKSGD-------------------------IKKIIMGLDKMKKTACGFCFVEY   56 (93)
T ss_dssp             CCEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHHHCC-------------------------cceeccccccccccccceEEEEE
Confidence            579999999986533     456788886654                         544444332  1    2399999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|..|.+.|++..+.|+.|+|.|+..
T Consensus        57 ~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~~   86 (93)
T d1h2vz_          57 YSRADAENAMRYINGTRLDDRIIRTDWDAG   86 (93)
T ss_dssp             SSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            999999999999999999999999999865

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=1.2e-08  Score=73.99  Aligned_cols=75  Identities=21%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      ++|||.|||..+-.     +.|+.+|++|                         |.+.++...+.-+-++|.|.+.++|.
T Consensus         9 ~~l~V~nLp~~~~~-----~~l~~~F~~~-------------------------G~i~~i~~~~~k~~afV~f~~~~~A~   58 (86)
T d2cpja1           9 SRLFVGNLPPDITE-----EEMRKLFEKY-------------------------GKAGEVFIHKDKGFGFIRLETRTLAE   58 (86)
T ss_dssp             TEEEEESCCTTCCH-----HHHHHHTSTT-------------------------CCCSEEEEETTTTEEEEECSSSHHHH
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHHHh-------------------------CCceEeeeecccceEEEEECCHHHHH
Confidence            58999999986544     3566788855                         55666677788889999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCCCC
Q psy258          119 KARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      .|...|++..|.|+.|+|.||.+..
T Consensus        59 ~A~~~l~g~~i~g~~l~V~~A~~~~   83 (86)
T d2cpja1          59 IAKVELDNMPLRGKQLRVRFACHSA   83 (86)
T ss_dssp             HHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             HHHHHhCCCEECCEEEEEEECCCcC
Confidence            9999999999999999999998743

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.2e-09  Score=75.72  Aligned_cols=76  Identities=20%  Similarity=0.265  Sum_probs=59.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF  111 (238)
                      .+||||.||+..+=+     +.|+.+|++||+                         +..+...+.      .|=++|.|
T Consensus         8 ~~~i~V~nLp~~~t~-----~~l~~~f~~~G~-------------------------v~~v~i~~d~~t~~~rg~afV~f   57 (90)
T d2cq0a1           8 NATIRVTNLSEDTRE-----TDLQELFRPFGS-------------------------ISRIYLAKDKTTGQSKGFAFISF   57 (90)
T ss_dssp             SEEEEEESCCTTCCH-----HHHHTTSTTTCC-------------------------EEEEEEEECSSSCSEEEEEEEEE
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHHhcc-------------------------cccccccccccccccccceeEEE
Confidence            469999999987555     356677885654                         444444332      22489999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      .+.++|.+|...|++..|.|+.++|.||++.+
T Consensus        58 ~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp~~   89 (90)
T d2cq0a1          58 HRREDAARAIAGVSGFGYDHLILNVEWAKPST   89 (90)
T ss_dssp             SSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEeeeCCC
Confidence            99999999999999999999999999999844

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.2e-08  Score=76.07  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=59.2

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec--CCC----CeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL--KSF----RRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L--kSF----~RiiVVF~  112 (238)
                      ++|||.|||..+-+     +.|+.+|++||.                         ++++...  +.-    |-++|.|.
T Consensus        19 ~~l~V~nLp~~~te-----~~l~~~F~~~G~-------------------------i~~~~~~~~~~~g~~kG~afV~f~   68 (102)
T d2cpza1          19 ANLFIYHLPQEFGD-----QDLLQMFMPFGN-------------------------VVSAKVFIDKQTNLSKCFGFVSYD   68 (102)
T ss_dssp             CCEEEESCCSSCCH-----HHHHHHHGGGSC-------------------------CSEEEEEECSSSCSEEEEEEEECS
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhhcc-------------------------ccccceeeecccCCCccceEEEeC
Confidence            58999999987754     356678886655                         4444333  222    35999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      +.++|..|...|++..|.|+.|+|.||++.+
T Consensus        69 ~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k~   99 (102)
T d2cpza1          69 NPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN   99 (102)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEEeCCCC
Confidence            9999999999999999999999999998743

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=7.7e-09  Score=77.76  Aligned_cols=74  Identities=18%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~  114 (238)
                      ..||||.||+..+-.     +.|+.+|++||+|                         ..+...   ++-|-++|.|.+.
T Consensus         7 ~r~l~V~nLp~~~te-----~~l~~~F~~~G~v-------------------------~~i~~~~~~~~kG~afV~f~~~   56 (114)
T d2f9da1           7 NRILYIRNLPYKITA-----EEMYDIFGKYGPI-------------------------RQIRVGNTPETRGTAYVVYEDI   56 (114)
T ss_dssp             CSEEEEESCCTTCCH-----HHHHHHHHTTSCE-------------------------EEEEEECSTTTTTEEEEEESSH
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHhhcCCe-------------------------EeecccccCCcCCeEEEEECCH
Confidence            359999999976544     4677889966654                         444433   2345699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|..|...|++..|.|+.|+|.|++.
T Consensus        57 ~~A~~Ai~~l~g~~~~gr~l~V~~a~~   83 (114)
T d2f9da1          57 FDAKNACDHLSGFNVCNRYLVVLYYNA   83 (114)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            999999999999999999999999865

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.78  E-value=3.3e-08  Score=76.76  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRV  109 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiV  109 (238)
                      +..+||||.||+..+-+     +.|+.+|++||                         .+.++...+      +.|=++|
T Consensus        40 ~~~~~l~V~nLp~~~te-----~~l~~~F~~~G-------------------------~i~~v~i~~d~~t~~~rg~afV   89 (139)
T d1u6fa1          40 DVLRNLMVNYIPTTVDE-----VQLRQLFERYG-------------------------PIESVKIVCDRETRQSRGYGFV   89 (139)
T ss_dssp             TTTSEEEEESCSTTCCH-----HHHHHHHHHHS-------------------------CEEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHHhhc-------------------------cccccccccccccccccceeeE
Confidence            44568999999987533     35668888565                         455554443      2234999


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .|.+.++|.+|+..|++..|.|+.|+|.||+..
T Consensus        90 ~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~  122 (139)
T d1u6fa1          90 KFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             EESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             EECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            999999999999999999999999999999763

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.5e-08  Score=72.82  Aligned_cols=73  Identities=22%  Similarity=0.198  Sum_probs=59.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      +||||.|||..+-+ +    .|+.+|++||.+                         .....-++.+-++|.|.+.++|.
T Consensus         9 k~l~V~nLp~~~te-~----~l~~~F~~~g~i-------------------------~~~~~~~~rg~afV~f~~~~~A~   58 (86)
T d2cpda1           9 KILYVRNLMLSTSE-E----MIEKEFNNIKPG-------------------------AVERVKKIRDYAFVHFSNREDAV   58 (86)
T ss_dssp             CEEEEESCCTTCCH-H----HHHHHHHTTSTT-------------------------CEEEEEECSSEEEEEESSHHHHH
T ss_pred             CEEEEcCCCCCCCH-H----HHHHhhccccee-------------------------eeEEEccccEEEEEEeCCHHHHH
Confidence            68999999986554 3    456788866553                         33334456678999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|+..|++..+.|+.|+|.||++
T Consensus        59 ~Ai~~l~~~~i~g~~i~V~~akP   81 (86)
T d2cpda1          59 EAMKALNGKVLDGSPIEVTLAKP   81 (86)
T ss_dssp             HHHHHHSSEEETTEEEEEECCCC
T ss_pred             HHHHHcCCCEECCEEEEEEeccC
Confidence            99999999999999999999987

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.5e-08  Score=74.10  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=64.0

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA  115 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e  115 (238)
                      +-+.+|+|+||+...    ..+++|+.||+                         .||.+..+..+++.+.++|.|++.+
T Consensus         6 ~~sr~v~v~nl~~~~----~t~~eL~~lF~-------------------------~fG~I~~i~i~~~k~~afV~f~~~~   56 (89)
T d1x4da1           6 ETRRVVHIMDFQRGK----NLRYQLLQLVE-------------------------PFGVISNHLILNKINEAFIEMATTE   56 (89)
T ss_dssp             CCCCEEEEESCCCSS----SHHHHHHTTTG-------------------------GGSCEEEEEECSSSSCEEEEESSHH
T ss_pred             CCCcEEEEECCCCCc----CCHHHHHHHHH-------------------------hhCCeEEEEeeccceEEEEEEcchh
Confidence            446799999998632    35667888888                         5566888888999999999999999


Q ss_pred             HHHHHHHHhc--CCccCCcceEEEEeCC
Q psy258          116 AAAKARINLH--QSVFASSKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~--~~~f~g~~lrIyFAq~  141 (238)
                      +|..|+..++  +..+.|++++|.||+.
T Consensus        57 ~A~~A~~~l~~~~~~~~gr~l~V~~s~~   84 (89)
T d1x4da1          57 DAQAAVDYYTTTPALVFGKPVRVHLSQK   84 (89)
T ss_dssp             HHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             hHHHHHHHHhhCCCccCCceEEEEECCC
Confidence            9999999774  5568999999999986

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.3e-09  Score=74.78  Aligned_cols=73  Identities=21%  Similarity=0.207  Sum_probs=59.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      |+|||.|||..+-+     +.|+.+|++||.+                         .....+++.|-++|.|.+.++|.
T Consensus         2 n~l~V~nLp~~~te-----~~L~~~F~~~G~i-------------------------~~~~~~~~rg~aFV~f~~~~~A~   51 (80)
T d2cqha1           2 NKLYIGNLSPAVTA-----DDLRQLFGDRKLP-------------------------LAGQVLLKSGYAFVDYPDQNWAI   51 (80)
T ss_dssp             CCEEEECCCTTCCH-----HHHHHHHHHTTCC-------------------------CSSCEEEETTEEEECCSCHHHHH
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHHHhCcE-------------------------EEeEEecccceEEEEECCHHHHH
Confidence            68999999987643     4666788866654                         44445566788999999999999


Q ss_pred             HHHHHhcCC-ccCCcceEEEEeCC
Q psy258          119 KARINLHQS-VFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~-~f~g~~lrIyFAq~  141 (238)
                      +|+..|++. .+.|+.|+|.||.+
T Consensus        52 ~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1          52 RAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             HHHHHHTTTCEETTEECEEEECCC
T ss_pred             HHHHHhCCCeEECCEEEEEEEcCC
Confidence            999999985 69999999999987

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.5e-09  Score=75.85  Aligned_cols=74  Identities=20%  Similarity=0.234  Sum_probs=58.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      -.||||.|||..+-+     +.|+.+|++||++                         .++...+      +.|=++|.|
T Consensus         5 ~~tlfV~nLp~~~te-----~~l~~~F~~~G~i-------------------------~~v~i~~d~~~~~~kg~afV~f   54 (89)
T d2cqba1           5 KRVLYVGGLAEEVDD-----KVLHAAFIPFGDI-------------------------TDIQIPLDYETEKHRGFAFVEF   54 (89)
T ss_dssp             CSCEEEESCCSSCCH-----HHHHHHHTTTSCC-------------------------CCEECCCCSSSCCCSSEEEECC
T ss_pred             CcEEEEeCCCCcCCH-----HHHHHHHhhCCeE-------------------------EecccccccccccccceeEEEE
Confidence            369999999987643     3566788866654                         3433332      334599999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|..|...+++..+.|+.|+|.||++
T Consensus        55 ~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p   84 (89)
T d2cqba1          55 ELAEDAAAAIDNMNESELFGRTIRVNLAKP   84 (89)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            999999999999999999999999999987

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.6e-08  Score=74.19  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=61.9

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF  111 (238)
                      .+||||.|||..+-+     +.|+.+|++||.+..+                 .+.........      ++.+=++|.|
T Consensus         8 ~~~i~V~nLp~~~te-----~~l~~~F~~~G~i~~~-----------------~~~~~~~~~~~~d~~~~~~~g~afV~f   65 (101)
T d2cpea1           8 NSAIYVQGLNDSVTL-----DDLADFFKQCGVVKMN-----------------KRTGQPMIHIYLDKETGKPKGDATVSY   65 (101)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHHTTTSCBCBC-----------------SSSCCBSEECCBCTTTCSBCSEEEEEB
T ss_pred             CCEEEEECCCCcCCH-----HHHHHHHHHCceEEEe-----------------eecccceeEEeeccccccccceeeEEe
Confidence            569999999987655     3567899999876311                 01111111111      2335599999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      .+.++|..|...|++..|+|+.|+|.+|++..
T Consensus        66 ~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~~~   97 (101)
T d2cpea1          66 EDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP   97 (101)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred             cCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            99999999999999999999999999998743

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.4e-08  Score=73.43  Aligned_cols=75  Identities=19%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..+|||.|||..+-+     +.|+.+|++||+|.                         .+...+      +.|=++|.|
T Consensus         5 ~~kifV~nLp~~~t~-----~~l~~~F~~~G~i~-------------------------~~~~~~~~~~~~~~g~afV~f   54 (90)
T d1x5sa1           5 EGKLFVGGLSFDTNE-----QSLEQVFSKYGQIS-------------------------EVVVVKDRETQRSRGFGFVTF   54 (90)
T ss_dssp             CSEEEEESCCTTCCH-----HHHHHHHHHHSCCC-------------------------EEEECCCSSSCSCCSEEEEEC
T ss_pred             CCEEEEECCCCcCCH-----HHHHHhhhcccccc-------------------------ceeeccccccccccceEEEEE
Confidence            468999999987655     35667888776644                         333332      334589999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|..|.+.|++..|+|+.|+|.+|.+.
T Consensus        55 ~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~   85 (90)
T d1x5sa1          55 ENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS   85 (90)
T ss_dssp             SSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            9999999999999999999999999999763

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.8e-08  Score=72.66  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAK  119 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~  119 (238)
                      +|+|.||+..+=+     +.|+.+|++||+|.                       -+.+..=++-+.++|.|.+.++|++
T Consensus         9 ~v~V~NL~~~vte-----~~L~~~F~~~G~i~-----------------------~~~i~~~~~~g~aFV~f~~~e~A~~   60 (108)
T d2adba1           9 RIIVENLFYPVTL-----DVLHQIFSKFGTVL-----------------------KIITFTKNNQFQALLQYADPVSAQH   60 (108)
T ss_dssp             EEESCSCCSTTHH-----HHHHHHHTTTSCEE-----------------------EEEEEEETTEEEEEEEESCHHHHHH
T ss_pred             EEEEeCcCCCCCH-----HHHHHHHccCCcEE-----------------------EEEEEeeCCCCeEEEEECCHHHHHH
Confidence            7889999985433     46778899666543                       1222223455679999999999999


Q ss_pred             HHHHhcCCccC--CcceEEEEeCC
Q psy258          120 ARINLHQSVFA--SSKINVYFVQP  141 (238)
Q Consensus       120 Ar~~L~~~~f~--g~~lrIyFAq~  141 (238)
                      |+..|++..+.  +..+++.|++.
T Consensus        61 Ai~~ln~~~l~~~~~~l~v~~s~~   84 (108)
T d2adba1          61 AKLSLDGQNIYNACCTLRIDFSKL   84 (108)
T ss_dssp             HHHHHHSCCSSTTCCCCEEEECSS
T ss_pred             HHHHHCCCEeccCCcEEEEEecCC
Confidence            99999998874  57899999877

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.7e-08  Score=70.86  Aligned_cols=75  Identities=19%  Similarity=0.207  Sum_probs=57.9

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe----cCCCCeEEEEeCCHHH
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY----LKSFRRMRVNYESSAA  116 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~----LkSF~RiiVVF~~~ea  116 (238)
                      |||.||+..+=+     +.|+.+|++||++.                      ....+..    -++.|=++|.|.+.++
T Consensus         1 lfV~nLp~~~te-----~~l~~~F~~~G~i~----------------------~~~~i~~~~~~g~~~g~afV~f~~~~~   53 (83)
T d1x5ta1           1 IFIGNLDPEIDE-----KLLYDTFSAFGVIL----------------------QTPKIMRDPDTGNSKGYAFINFASFDA   53 (83)
T ss_dssp             EEEECCCTTCCH-----HHHHHHHHTTSCBS----------------------SCCEECCCTTTCSCCSEEEEEBSSHHH
T ss_pred             CEEcCCCCcCcH-----HHHHHHHHHhCcee----------------------eeEEEEeeccccccCceEEEEECCHHH
Confidence            799999986544     45678999887754                      1111111    1344569999999999


Q ss_pred             HHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          117 AAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       117 A~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      |.+|+..|++..+.|++|+|.+|.+.
T Consensus        54 a~~Ai~~~~g~~~~gr~l~v~~a~~k   79 (83)
T d1x5ta1          54 SDAAIEAMNGQYLCNRPITVSYAFKK   79 (83)
T ss_dssp             HHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             HHHHHHhCCCcEECCEEEEEEEecCC
Confidence            99999999999999999999999863

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=6.4e-08  Score=71.77  Aligned_cols=76  Identities=14%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             CCCCcEEEecCCCC-CCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           36 QLPKSLIITNLNPD-LFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        36 ~~p~TLiitnL~~~-vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      ....+|+|.|||.+ +-+ +    .|+.+|+                         .||.+..+..+++-+-++|.|.+.
T Consensus        16 ~~~~~l~v~nLp~~~~te-~----~l~~~F~-------------------------~fG~V~~v~~~~~k~~afV~f~~~   65 (99)
T d1x4fa1          16 ELGRVIHLSNLPHSGYSD-S----AVLKLAE-------------------------PYGKIKNYILMRMKSQAFIEMETR   65 (99)
T ss_dssp             CCCCEEEEESCCCSSCCS-H----HHHTTTT-------------------------TTSCCSEEEEETTTTEEEEECSSH
T ss_pred             CCCCEEEEeCCcCCccCH-H----HHHhhhc-------------------------cccceeEEEEeecCCcEEEEecch
Confidence            33469999999864 433 3    4556777                         556677888889999999999999


Q ss_pred             HHHHHHHH--HhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARI--NLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~--~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|..  .+++..|.|+.|+|.||+.
T Consensus        66 ~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~   94 (99)
T d1x4fa1          66 EDAMAMVDHCLKKALWFQGRCVKVDLSEK   94 (99)
T ss_dssp             HHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             HHHHHHHHHHhcCCceECCEEEEEEEcCC
Confidence            99999997  4677789999999999975

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.4e-08  Score=73.76  Aligned_cols=74  Identities=19%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .+||||.|||..+-+     +.|++||++||-                        ..+..  -++-+-++|.|.+.++|
T Consensus         5 s~~i~V~nLp~~~t~-----~~l~~lF~~~G~------------------------~~~~~--~~~kg~afV~f~~~~~A   53 (88)
T d1wg1a_           5 SSGILVKNLPQDSNC-----QEVHDLLKDYDL------------------------KYCYV--DRNKRTAFVTLLNGEQA   53 (88)
T ss_dssp             CCCEEEESCCSSCCH-----HHHHHHTCSSCC------------------------CCEEE--EGGGTEEEECCSCHHHH
T ss_pred             CCEEEEeCCCCccCh-----HHHHHHHHhcCc------------------------eeeee--eccCCceEEEECCHHHH
Confidence            469999999987655     356788887762                        11222  23446799999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+|...|++..|.|+.|+|.|+++.
T Consensus        54 ~~Ai~~ln~~~~~G~~l~V~~a~~~   78 (88)
T d1wg1a_          54 QNAIQMFHQYSFRGKDLIVQLQPTD   78 (88)
T ss_dssp             HHHHHHHTTEEETTEEEEEEECCCC
T ss_pred             HHHHHHhCCCEECCEEEEEEEcCCC
Confidence            9999999999999999999999763

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.3e-08  Score=70.71  Aligned_cols=76  Identities=29%  Similarity=0.347  Sum_probs=60.9

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEe
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNY  111 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF  111 (238)
                      .-|++|||.|||..+=+     +.|+.+|++||+                         +..+...+    +.+.++|.|
T Consensus         9 ~~~~~l~v~nLp~~~t~-----~~L~~~F~~~G~-------------------------v~~v~~~~~~~~~kg~afV~f   58 (93)
T d2cq3a1           9 STPKRLHVSNIPFRFRD-----PDLRQMFGQFGK-------------------------ILDVEIIFNERGSKGFGFVTF   58 (93)
T ss_dssp             CCCCEEEEESCCTTCCH-----HHHHHHGGGTSC-------------------------EEEEEEECCTTTTCCEEEEEE
T ss_pred             CCCCEEEEECCCCCCCH-----HHHHHHHhhcce-------------------------eeeccccccccCCcceeEEEE
Confidence            44789999999975433     466788886654                         44444333    346799999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.+.|..|...|++..|.|+.|+|.+|++
T Consensus        59 ~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~   88 (93)
T d2cq3a1          59 ENSADADRAREKLHGTVVEGRKIEVNNATA   88 (93)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEecCc
Confidence            999999999999999999999999999987

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.6e-08  Score=72.02  Aligned_cols=73  Identities=21%  Similarity=0.268  Sum_probs=56.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .||||.||+..+-+     +.|+.+|++||+|.                         .+...+      +.|=++|.|.
T Consensus         9 rtl~V~nLp~~~te-----~~l~~~f~~~G~i~-------------------------~v~i~~~~~tg~~~g~afV~f~   58 (104)
T d1p1ta_           9 RSVFVGNIPYEATE-----EQLKDIFSEVGPVV-------------------------SFRLVYDRETGKPKGYGFCEYQ   58 (104)
T ss_dssp             SCEEEESCCTTSCH-----HHHHHHHHTTSCCS-------------------------EEEEEEETTTTEEEEEEEEECS
T ss_pred             CEEEEECCCCcCCH-----HHHHHhhhcccccc-------------------------ccccccccceeccCCceEEEEC
Confidence            48999999986543     45667888776644                         333322      1233899999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...|++..|.|..|+|.+|.+
T Consensus        59 ~~~~a~~ai~~l~~~~~~g~~i~V~~a~~   87 (104)
T d1p1ta_          59 DQETALSAMRNLNGREFSGRALRVDNAAS   87 (104)
T ss_dssp             CHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred             CHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            99999999999999999999999999876

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=7.7e-08  Score=71.59  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=60.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .++|+|.||+..+=+     +.|+.+|+                         .||.+..+..++.-+.++|.|.+.++|
T Consensus        15 s~~l~v~nlp~~~te-----~~l~~~F~-------------------------~fG~I~~~~~~~~k~~AfV~f~~~e~A   64 (104)
T d1wexa_          15 SPVVHVRGLCESVVE-----ADLVEALE-------------------------KFGTICYVMMMPFKRQALVEFENIDSA   64 (104)
T ss_dssp             CSEEEEESCCSSCCH-----HHHHHHHT-------------------------TTSCEEEEEEETTTTEEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHhhh-------------------------hcccceEEEEEecceeEEEEeCCHHHH
Confidence            358999999987544     35667888                         556677888888889999999999999


Q ss_pred             HHHHHHhcC--CccCCcceEEEEeCC
Q psy258          118 AKARINLHQ--SVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~--~~f~g~~lrIyFAq~  141 (238)
                      ++|+..+++  ..+.|.+++|.|++.
T Consensus        65 ~~ai~~~~~~~~~~~g~~l~v~~s~~   90 (104)
T d1wexa_          65 KECVTFAADVPVYIAGQQAFFNYSTS   90 (104)
T ss_dssp             HHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred             HHHHHHHcCCCcEEeeEEEEEEEcCC
Confidence            999998865  457789999999976

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=7.7e-08  Score=67.91  Aligned_cols=71  Identities=21%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHH
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKA  120 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~A  120 (238)
                      |||.|||.++-+     +.|+.+|++||                          +.....-++-|-++|.|.+.+.|.+|
T Consensus         1 i~V~nLp~~~t~-----~~l~~~F~~~g--------------------------~~~~~~~~~~g~afv~f~~~~~A~~A   49 (75)
T d1wi6a1           1 ILIRGLPGDVTN-----QEVHDLLSDYE--------------------------LKYCFVDKYKGTAFVTLLNGEQAEAA   49 (75)
T ss_dssp             EEEECCCTTCCH-----HHHHHHTTTSC--------------------------EEEEEEETTTTEEEEEESSHHHHHHH
T ss_pred             CEEeCCCCcCCH-----HHHHHHHhccc--------------------------ccceeecccceeEEEEECCHHHHHHH
Confidence            799999987655     35567888664                          33344457778899999999999999


Q ss_pred             HHHhcCCccCCcceEEEEeCCC
Q psy258          121 RINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       121 r~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      ...|++..+.|++|+|.|++..
T Consensus        50 i~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          50 INTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             HHHHTTEESSSCEEEEEECCST
T ss_pred             HHHhCCccCCCCEEEEEEeCCC
Confidence            9999999999999999999763

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.2e-07  Score=69.29  Aligned_cols=73  Identities=15%  Similarity=0.040  Sum_probs=59.0

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .||||.|||..+=+     +.|+.+|++|                         |++.++...+      +.|-++|.|.
T Consensus        10 ~tlfV~nLp~~~t~-----~~l~~~F~~~-------------------------G~v~~v~~~~d~~tg~~kg~afV~f~   59 (93)
T d1x5ua1          10 ATVYVGGLDEKVSE-----PLLWELFLQA-------------------------GPVVNTHMPKDRVTGQHQGYGFVEFL   59 (93)
T ss_dssp             TEEEEECCCTTCCH-----HHHHHHHHTT-------------------------SCEEEEECCBCSSSCSBCSCEEEEES
T ss_pred             CEEEEeCCCCcCCH-----HHHHHHHHHh-------------------------CCccccceeecccccccccceEEEEC
Confidence            59999999986633     4566788855                         5555555443      3356999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|++.|++..|+|+.|+|.+|.+
T Consensus        60 ~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~   88 (93)
T d1x5ua1          60 SEEDADYAIKIMDMIKLYGKPIRVNKASA   88 (93)
T ss_dssp             SHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred             CHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            99999999999999999999999999987

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=1.6e-07  Score=68.73  Aligned_cols=76  Identities=20%  Similarity=0.255  Sum_probs=59.4

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMR  108 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~Rii  108 (238)
                      .-.++|||.|||..+-+     +.|+.+|++||+                         +..+...+       +.|-++
T Consensus         6 ~~~~~l~V~nLp~~~~e-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~g~~rg~af   55 (94)
T d2cpha1           6 QTTSKILVRNIPFQANQ-----REIRELFSTFGE-------------------------LKTVRLPKKMTGTGAHRGFGF   55 (94)
T ss_dssp             SCCCCEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEECCCCCSSSCSSCSEEE
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHHHhCC-------------------------ceEEEEEeccccCCCcccEEE
Confidence            34579999999986544     346678886654                         54444433       345699


Q ss_pred             EEeCCHHHHHHHHHHh-cCCccCCcceEEEEeCC
Q psy258          109 VNYESSAAAAKARINL-HQSVFASSKINVYFVQP  141 (238)
Q Consensus       109 VVF~~~eaA~~Ar~~L-~~~~f~g~~lrIyFAq~  141 (238)
                      |.|.+.++|.+|...| ++..|.|+.|+|.||+.
T Consensus        56 V~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~   89 (94)
T d2cpha1          56 VDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS   89 (94)
T ss_dssp             EEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred             EEECCHHHHHHHHHHccCCcEECCEEEEEEEcCC
Confidence            9999999999999998 78899999999999987

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=7.9e-08  Score=69.27  Aligned_cols=73  Identities=16%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      .||||.||+..+-+     +.|+.+|+                         .||.+..+...++-+-++|-|.+.++|.
T Consensus         9 ~~l~V~nLp~~~t~-----~~L~~~f~-------------------------~~G~i~~v~~~~~~~~afV~f~~~e~A~   58 (88)
T d2cq1a1           9 RVLHIRKLPGEVTE-----TEVIALGL-------------------------PFGKVTNILMLKGKNQAFLELATEEAAI   58 (88)
T ss_dssp             SEEEEESCCTTCCH-----HHHHHTTT-------------------------TTSCEEEEEEETTTTEEEEEESSHHHHH
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHh-------------------------cccccccccccccceEEEEEeCCHHHHH
Confidence            49999999986544     34567777                         5566777778888899999999999999


Q ss_pred             HHHHHhc--CCccCCcceEEEEeCC
Q psy258          119 KARINLH--QSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~--~~~f~g~~lrIyFAq~  141 (238)
                      +|...++  +..+.|++++|.|++.
T Consensus        59 ~a~~~~~~~~~~~~g~~l~v~~sk~   83 (88)
T d2cq1a1          59 TMVNYYSAVTPHLRNQPIYIQYSNH   83 (88)
T ss_dssp             HHHHHHHHSCCEETTEECEEEECSC
T ss_pred             HHHHHHccCCCccCCCEEEEEECCC
Confidence            9998765  5678999999999976

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=3.1e-08  Score=72.97  Aligned_cols=75  Identities=21%  Similarity=0.232  Sum_probs=58.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      +++|||.||+..+=+     +.|+++|++||                         ++.++...+      +.+=++|.|
T Consensus         8 ~~~lfV~nL~~~~t~-----~~l~~~F~~~g-------------------------~v~~v~i~~d~~tg~~~g~afV~f   57 (99)
T d1whwa_           8 SGRLFVRNLSYTSSE-----EDLEKLFSAYG-------------------------PLSELHYPIDSLTKKPKGFAFVTF   57 (99)
T ss_dssp             CEEEEEECCCTTCCH-----HHHHHHHHTTS-------------------------CEEEEECCCCTTTCCCCSEEEEEE
T ss_pred             CCEEEEECCCCcCCH-----HHHHHHHHhcC-------------------------CceeeeecccccccccCcceEEEE
Confidence            568999999976444     35667788554                         454444432      223589999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|+..|++..|.|+.|+|.+++..
T Consensus        58 ~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~   88 (99)
T d1whwa_          58 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK   88 (99)
T ss_dssp             SSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            9999999999999999999999999999873

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.59  E-value=6.2e-08  Score=70.09  Aligned_cols=73  Identities=18%  Similarity=0.239  Sum_probs=57.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~  112 (238)
                      .+|||+||+..+-+     +.|+.+|++||+                         +.++...+.      .|-++|.|.
T Consensus         8 ~~l~V~nL~~~~t~-----~~l~~~F~~~G~-------------------------i~~v~i~~d~~tg~~~g~afV~f~   57 (88)
T d1rk8a_           8 WILFVTSIHEEAQE-----DEIQEKFCDYGE-------------------------IKNIHLNLDRRTGFSKGYALVEYE   57 (88)
T ss_dssp             EEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTSSEEEEEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHHcCC-------------------------cccccccccccccccccceeEEEC
Confidence            58999999987544     456678885554                         555544332      234899999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|+..|++..+.|+.|+|.||.+
T Consensus        58 ~~~~A~~A~~~lng~~l~g~~l~V~~a~~   86 (88)
T d1rk8a_          58 THKQALAAKEALNGAEIMGQTIQVDWCFV   86 (88)
T ss_dssp             SHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             CHHHHHHHHHHcCCCEECCEEEEEEEecC
Confidence            99999999999999999999999999876

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=1.2e-07  Score=67.04  Aligned_cols=72  Identities=24%  Similarity=0.339  Sum_probs=56.7

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCCH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYESS  114 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~~  114 (238)
                      -|||.|||..+-+     +.|+.+|++||+                         +..+...+     +.|-++|.|.+.
T Consensus         2 rl~V~nLp~~~~~-----~~l~~~F~~~G~-------------------------v~~~~i~~~~~g~~~g~afV~f~~~   51 (78)
T d1no8a_           2 KLLVSNLDFGVSD-----ADIQELFAEFGT-------------------------LKKAAVHYDRSGRSLGTADVHFERK   51 (78)
T ss_dssp             EEEEESCCTTCCH-----HHHHHHHHHHSC-------------------------EEEEEESCSSCCCSCCEEEEEESCH
T ss_pred             EEEEECCCCCCCH-----HHHHHHHHHhCC-------------------------CeEEEEEEeeccccceeEEEEECCH
Confidence            3899999987555     355678886655                         44444332     345799999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|.+.+++..++|+.|+|.+|.+
T Consensus        52 ~~A~~Ai~~l~g~~l~g~~l~V~~a~S   78 (78)
T d1no8a_          52 ADALKAMKQYNGVPLDGRPMNIQLVTS   78 (78)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred             HHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            999999999999999999999999863

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.5e-08  Score=68.66  Aligned_cols=72  Identities=22%  Similarity=0.311  Sum_probs=57.5

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~~  113 (238)
                      +|||.||+..+=+     +.|+.+|++|                         |++.++...+      +.|-++|.|.+
T Consensus         2 slfV~nL~~~~te-----~~l~~~F~~~-------------------------G~i~~v~i~~d~~tg~~~g~aFV~f~~   51 (80)
T d1cvja1           2 SLYVGDLHPDVTE-----AMLYEKFSPA-------------------------GPILSIRVCRDMITRRSLGYAYVNFQQ   51 (80)
T ss_dssp             EEEEESCCTTCCH-----HHHHHHHGGG-------------------------SCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             EEEEeCCCCcCCH-----HHHHHHHHHh-------------------------CCEeEEEEEecccccCCCCceEEEECC
Confidence            7999999986644     3566788855                         5555555543      23579999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .++|..|+..|++..+.|+.|+|.||+.
T Consensus        52 ~~~a~~ai~~l~g~~~~gr~i~v~~a~~   79 (80)
T d1cvja1          52 PADAERALDTMNFDVIKGKPVRIMWSQR   79 (80)
T ss_dssp             HHHHHHHHTTSTTCEETTEECEEEECCC
T ss_pred             HHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            9999999999999999999999999874

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.1e-08  Score=70.15  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC----CCCeEEEEeCCH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK----SFRRMRVNYESS  114 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk----SF~RiiVVF~~~  114 (238)
                      ++|||.||+..+=+     +.|+.+|++||+|                         ..+...+    +.|-++|.|.+.
T Consensus         9 ~~l~V~nLp~~~t~-----~~l~~~F~~~G~v-------------------------~~~~i~~~~~~~kg~afV~f~~~   58 (89)
T d1cvja2           9 GNIFIKNLDKSIDN-----KALYDTFSAFGNI-------------------------LSCKVVCDENGSKGYGFVHFETQ   58 (89)
T ss_dssp             TEEEEESCCSSCCH-----HHHHHHHHTTSCE-------------------------EEEEECCBTTBCCSCEEEEESCH
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhcCCc-------------------------eEEEEEeecCCCcceeEEEECCH
Confidence            58999999987644     3566788866554                         4333332    345699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|...|++..+.|+.|+|.+|++
T Consensus        59 ~~A~~Ai~~l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2          59 EAAERAIEKMNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             HHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            999999999999999999999999987

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=7.4e-08  Score=69.98  Aligned_cols=75  Identities=21%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEe
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNY  111 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF  111 (238)
                      ..||||.|||..+-+     +.|+.+|++||+                         +..+...+      +.|-++|.|
T Consensus         8 ~~tlfV~nLp~~~te-----~~l~~~f~~~G~-------------------------v~~~~~~~~~~~~~~~g~afV~F   57 (98)
T d1x4ha1           8 GKTVFIRNLSFDSEE-----EALGEVLQQFGD-------------------------LKYVRVVLHPDTEHSKGCAFAQF   57 (98)
T ss_dssp             CCCEEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEECCBCSSSCCBCSEEEEEE
T ss_pred             CCEEEEcCCCCcCCH-----HHHHHHHhcccc-------------------------ceeeeeccccccccccceEEEEE
Confidence            369999999987655     355678886655                         44444433      335699999


Q ss_pred             CCHHHHHHHHHHhcC------CccCCcceEEEEeCCC
Q psy258          112 ESSAAAAKARINLHQ------SVFASSKINVYFVQPM  142 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~------~~f~g~~lrIyFAq~~  142 (238)
                      .+.++|.+|+..+++      ..+.|+.++|.||++.
T Consensus        58 ~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~k   94 (98)
T d1x4ha1          58 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR   94 (98)
T ss_dssp             SSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred             cCHHHHHHHHHHcccccccCCcEECCEEEEEEECCCC
Confidence            999999999999874      4577889999999874

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.4e-08  Score=68.60  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC--C----CCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK--S----FRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk--S----F~RiiVVF~  112 (238)
                      +||||.||+..+=+     +.|+.+|++||+                         +.++...+  .    .+=++|.|.
T Consensus        10 ~~l~V~nL~~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~g~afV~f~   59 (83)
T d2cqca1          10 CCLGVFGLSLYTTE-----RDLREVFSKYGP-------------------------IADVSIVYDQQSRRSRGFAFVYFE   59 (83)
T ss_dssp             GCEEEESCCSSCCH-----HHHHHHHHTTSC-------------------------EEEEEEEECSSSSSEEEEEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHHhCC-------------------------CccccccccccccccccceEEEEC
Confidence            49999999986554     456678886655                         44443332  2    234999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEE
Q psy258          113 SSAAAAKARINLHQSVFASSKINV  136 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrI  136 (238)
                      +.++|..|+..|++..|.|+.|+|
T Consensus        60 ~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          60 NVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             SHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CHHHHHHHHHHcCCCEECCEEeEC
Confidence            999999999999999999988876

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7.3e-08  Score=71.43  Aligned_cols=75  Identities=20%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHH
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSA  115 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~e  115 (238)
                      ....+|||.||+...-.    .+.|+.+|++||+                         +..+..  +.+-++|.|.+.+
T Consensus        13 ~~~~~lfV~nL~~~~~~----~~~L~~~F~~~G~-------------------------i~~~~i--~rg~aFV~f~~~~   61 (98)
T d1wf2a_          13 SMNSRVFIGNLNTLVVK----KSDVEAIFSKYGK-------------------------IVGCSV--HKGFAFVQYVNER   61 (98)
T ss_dssp             SCCCCEEEEEECTTTCC----HHHHHHSSTTSSC-------------------------EEEEEE--ETEEEEEEESSHH
T ss_pred             CCCcEEEEeCCCcccCC----HHHHHHHHhhcCC-------------------------EEEEEE--eCCeEEEEECCHH
Confidence            44568999999864333    2357788886655                         555444  3467999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|.+|...|++..|.|+.|+|.+++.
T Consensus        62 ~A~~Ai~~lng~~~~g~~l~V~~a~~   87 (98)
T d1wf2a_          62 NARAAVAGEDGRMIAGQVLDINLAAE   87 (98)
T ss_dssp             HHHHHHHTTTTCEETTEECEEEETTS
T ss_pred             HHHHHHHHcCCCEECCEEEEEEECCC
Confidence            99999999999999999999999875

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.1e-07  Score=68.62  Aligned_cols=72  Identities=11%  Similarity=0.113  Sum_probs=57.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAA  118 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~  118 (238)
                      |.|||.|||..+-+ +    .|+.+|++||+                         +..+... +-|-++|.|.+.++|.
T Consensus         1 nrvfV~nlp~~~~~-~----~l~~~F~~~G~-------------------------v~~~~i~-~~g~afV~f~~~~~a~   49 (87)
T d3begb1           1 NRVVVSGLPPSGSW-Q----DLKDHMREAGD-------------------------VCYADVY-RDGTGVVEFVRKEDMT   49 (87)
T ss_dssp             CCEEEEECCSSCCT-T----HHHHHHGGGSC-------------------------EEEEEEC-TTSEEEEEESSHHHHH
T ss_pred             CeEEEECCCCcCCH-H----HHHHHHhhhcc-------------------------ccccccc-ccceeeEEeCCHHHHH
Confidence            57999999988766 2    46678886654                         5454433 3377999999999999


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +|...|++..|.|..+++-|++.
T Consensus        50 ~Ai~~l~g~~~~g~~i~v~~~~~   72 (87)
T d3begb1          50 YAVRKLDNTKFRSHEGETAYIRV   72 (87)
T ss_dssp             HHHHHHTTCBCCCTTSCCCBCEE
T ss_pred             HHHHHhCCCEECCcEeEEeEEec
Confidence            99999999999999988877654

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.51  E-value=8.1e-08  Score=70.18  Aligned_cols=78  Identities=19%  Similarity=0.161  Sum_probs=62.5

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      +.||||+||+..+-+     +.|+.+|++||++.                   .. .++.-..-++.|-++|.|.+.++|
T Consensus        13 ~~~ifV~nL~~~~te-----~~l~~~F~~~G~i~-------------------~~-~v~~~~~g~~kg~afv~F~~~e~a   67 (91)
T d1fjeb1          13 PFNLFIGNLNPNKSV-----AELKVAISELFAKN-------------------DL-AVVDVRTGTNRKFGYVDFESAEDL   67 (91)
T ss_dssp             SEEEEEECCCTTSCH-----HHHHHHHHHHHHHH-------------------TC-CCCEEEEETTTTEEEEEESSHHHH
T ss_pred             CcEEEEeCccCcchH-----HHHHHHHhcCCcEE-------------------Ee-eeeecCCCCccEEeEEeeCCHHHH
Confidence            459999999986655     45778899888754                   22 344445567788999999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|.. +++..++|..|+|-+|+.
T Consensus        68 ~~Al~-~~g~~~~g~~i~V~~ak~   90 (91)
T d1fjeb1          68 EKALE-LTGLKVFGNEIKLEKPKG   90 (91)
T ss_dssp             HHHHH-GGGEEETTEEEEEECCCC
T ss_pred             HHHHh-cCCcEECCEEEEEEecCC
Confidence            99985 999999999999999875

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=7.3e-08  Score=70.04  Aligned_cols=73  Identities=16%  Similarity=0.178  Sum_probs=56.7

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCC---------CeEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSF---------RRMR  108 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF---------~Rii  108 (238)
                      .|+|||.|||..+-+ ++|+ .++++|++||+                         +..+...+..         +-++
T Consensus         8 ~n~vyV~nLp~~~t~-~~l~-~~~e~F~~~G~-------------------------I~~v~i~~~~~~~~~~~~~g~aF   60 (89)
T d2cpia1           8 KNLVFVVGLSQRLAD-PEVL-KRPEYFGKFGK-------------------------IHKVVINNSTSYAGSQGPSASAY   60 (89)
T ss_dssp             SSCEEEEEECTTTCC-HHHH-HSTTTTTTTSC-------------------------EEEEEEECCSSCCSSSCCCEEEE
T ss_pred             cCEEEEECCCCccCH-HHHH-HHHHHhcccCC-------------------------ceEEEEeeccCcCCCCCcceEEE
Confidence            479999999988776 5564 45677886655                         5455444321         3489


Q ss_pred             EEeCCHHHHHHHHHHhcCCccCCcceEEE
Q psy258          109 VNYESSAAAAKARINLHQSVFASSKINVY  137 (238)
Q Consensus       109 VVF~~~eaA~~Ar~~L~~~~f~g~~lrIy  137 (238)
                      |.|.+.++|.+|...|++..|.|+.||+.
T Consensus        61 V~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          61 VTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             EEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             EecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            99999999999999999999999999873

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.4e-07  Score=70.05  Aligned_cols=63  Identities=16%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             HHHHHHHhhhhcCCceEEEecCC--CCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCCCC
Q psy258           81 LKEQIETLLSQFGKPKSFQYLKS--FRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus        81 ~~~~~~~~~~~~~~iv~fv~LkS--F~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      |++.+++.++.||.+..+...+.  -|.++|.|.+.++|..|...|++..|.|+.|+|.|....+
T Consensus        32 i~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~g~~   96 (99)
T d2dita1          32 IREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT   96 (99)
T ss_dssp             HHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred             HHHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeCCcC
Confidence            44555556667777777665443  3689999999999999999999999999999999987644

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=2.1e-07  Score=66.88  Aligned_cols=74  Identities=16%  Similarity=0.309  Sum_probs=56.7

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC-------CCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS-------FRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS-------F~RiiVV  110 (238)
                      ..+|||.||+.++-..    +.|+.+|++||+                         +..+...+.       .|=++|.
T Consensus         4 ~~~l~V~nLp~~~t~e----d~l~~~F~~~G~-------------------------i~~v~i~~~~~~~~~~kg~afV~   54 (86)
T d2ghpa3           4 GREIMIRNLSTELLDE----NLLRESFEGFGS-------------------------IEKINIPAGQKEHSFNNCCAFMV   54 (86)
T ss_dssp             TTEEEEEEECTTTCCH----HHHHHHHGGGSC-------------------------EEEEECCSCCC---CCCEEEEEE
T ss_pred             CCEEEEECCCCCcccH----HHHHHHHHhhhh-------------------------ccceeeecccCCccccceeeeEE
Confidence            3699999999876552    246788886655                         544443332       2348999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|.+ |++..|.|+.|+|.||++
T Consensus        55 f~~~~~a~~Al~-~n~~~~~gr~l~V~~a~~   84 (86)
T d2ghpa3          55 FENKDSAERALQ-MNRSLLGNREISVSLADK   84 (86)
T ss_dssp             ESSHHHHHHHGG-GTTEEETTEEEEEEECCC
T ss_pred             ECCHHHHHHHHh-cCCCEECCEEEEEEEcCC
Confidence            999999999985 999999999999999886

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.5e-07  Score=65.07  Aligned_cols=73  Identities=25%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~  112 (238)
                      ..|||.|||..+-+ +    .|+.+|++|                         |++..+...      ++.+-++|.|.
T Consensus         2 ~rlfV~nlp~~~te-~----~l~~~F~~~-------------------------G~v~~v~i~~d~~tg~~rg~aFV~f~   51 (85)
T d2u2fa_           2 HKLFIGGLPNYLND-D----QVKELLTSF-------------------------GPLKAFNLVKDSATGLSKGYAFCEYV   51 (85)
T ss_dssp             CCEEEETCCSSCCS-H----HHHHHHTSS-------------------------SCEEEEEEECCCSSSCCCCEEEEEES
T ss_pred             CEEEEECCCCCCCH-H----HHHHHHHhc-------------------------CccceEEeeccccccccceeEEEEEC
Confidence            46999999987766 3    455678855                         555555543      34567999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|..|+..|++..+.|+.|+|.||..
T Consensus        52 ~~~~A~~a~~~l~~~~l~g~~l~V~~A~~   80 (85)
T d2u2fa_          52 DINVTDQAIAGLNGMQLGDKKLLVQRASV   80 (85)
T ss_dssp             SSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred             CHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            99999999999999999999999999976

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.47  E-value=4.1e-07  Score=64.99  Aligned_cols=71  Identities=20%  Similarity=0.301  Sum_probs=54.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      ++|||.|||..+-+     +.|+.+|++||+                         +..+...+      +.|-++|.|.
T Consensus         7 t~lfV~nlp~~~te-----~~l~~~F~~~G~-------------------------i~~~~~~~d~~~g~~~g~afV~f~   56 (85)
T d1b7fa2           7 TNLYVTNLPRTITD-----DQLDTIFGKYGS-------------------------IVQKNILRDKLTGRPRGVAFVRYN   56 (85)
T ss_dssp             CEEEEESCCTTCCH-----HHHHHHHTSSSC-------------------------EEEEEEEECTTTCCEEEEEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHhhCC-------------------------EeeeeeecccccccCceeEEEEEC
Confidence            57999999987644     356688886655                         44444332      2345899999


Q ss_pred             CHHHHHHHHHHhcCCccCC--cceEEEEe
Q psy258          113 SSAAAAKARINLHQSVFAS--SKINVYFV  139 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g--~~lrIyFA  139 (238)
                      +.++|.+|++.|++..+.|  ++|+|.||
T Consensus        57 ~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2          57 KREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             SHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence            9999999999999998876  67999886

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=1.7e-07  Score=66.77  Aligned_cols=71  Identities=28%  Similarity=0.292  Sum_probs=55.3

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC---------CCCeEEEEe
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK---------SFRRMRVNY  111 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk---------SF~RiiVVF  111 (238)
                      |||.|||..+=+     +.|+.+|++||+                         +.+....+         +.|-++|.|
T Consensus         1 LfV~nLp~~~t~-----~~l~~~F~~~G~-------------------------v~~v~i~~~~~~~~~~~~kG~afV~f   50 (85)
T d2cpfa1           1 LFIKNLNFSTTE-----ETLKGVFSKVGA-------------------------IKSCTISKKKNKAGVLLSMGFGFVEY   50 (85)
T ss_dssp             EEEESCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred             CEEcCCCCCCCH-----HHHHHHHHHhCC-------------------------ccccceecccccccccccceEEEEEE
Confidence            799999986544     456788886655                         44333322         122389999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|+..+++..+.|+.|+|.||+.
T Consensus        51 ~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~   80 (85)
T d2cpfa1          51 KKPEQAQKALKQLQGHTVDGHKLEVRISER   80 (85)
T ss_dssp             SSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            999999999999999999999999999876

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=2.2e-07  Score=68.74  Aligned_cols=73  Identities=12%  Similarity=0.114  Sum_probs=59.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      +.+|||.|||..+=.     +.|+.+|++||+|                         .... +.+-+-++|.|.+.++|
T Consensus        15 ~~~i~V~Nlp~~~~~-----~~L~~~F~~~G~v-------------------------~~~~-i~~~g~afV~f~~~~~a   63 (98)
T d1wg4a_          15 DFRVLVSGLPPSGSW-----QDLKDHMREAGDV-------------------------CYAD-VQKDGMGMVEYLRKEDM   63 (98)
T ss_dssp             SCEEEEECCCSSCCH-----HHHHHHHTTSSCE-------------------------EEEE-EETTTEEEEEESSHHHH
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHhhccc-------------------------cccc-ccccceEEEEECCHHHH
Confidence            458999999987554     3466788866554                         3332 34558899999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+|...|++..|.|..|++.|++.
T Consensus        64 ~~Ai~~lng~~~~g~~i~v~~~~~   87 (98)
T d1wg4a_          64 EYALRKLDDTKFRSHEGETSYIRV   87 (98)
T ss_dssp             HHHHHHHSSEEEECTTSCEEEEEE
T ss_pred             HHHHHHhCCCEeCCeEEEEEEEec
Confidence            999999999999999999999876

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=2.8e-07  Score=63.77  Aligned_cols=74  Identities=15%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHHH
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAKA  120 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~A  120 (238)
                      |||.|||..+-+     +.|+.+|++||++.                   ...-+..-..=++.+-++|.|.+.++|..|
T Consensus         2 lfV~nLp~~~te-----~~l~~~F~~~G~i~-------------------~~~~~~~~~~~~~~~~afV~F~~~~~a~~a   57 (75)
T d2msta_           2 IFVGGLSVNTTV-----EDVKHYFEQFGKVD-------------------DAMLMFDKTTNRHRGFGFVTFESEDIVEKV   57 (75)
T ss_dssp             EEEECCCSSCCH-----HHHHHHHHTTSCCS-------------------EECCBCCTTCTTSCCEEEEECSCHHHHHHH
T ss_pred             EEEeCCCCCCCH-----HHHHHHHHHhCCcc-------------------eeeeeeeccccccCceeEEEECCHHHHHHH
Confidence            899999986555     45778899887754                   100000000112345699999999999999


Q ss_pred             HHHhcCCccCCcceEEEEe
Q psy258          121 RINLHQSVFASSKINVYFV  139 (238)
Q Consensus       121 r~~L~~~~f~g~~lrIyFA  139 (238)
                      +. +++..|.|+.++|..|
T Consensus        58 l~-~~~~~l~gr~i~V~~A   75 (75)
T d2msta_          58 CE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             HH-CSSCCBTTBCCEEEEC
T ss_pred             Hh-cCCCEECCeEEEEEEC
Confidence            85 9999999999999875

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=7e-07  Score=63.93  Aligned_cols=71  Identities=21%  Similarity=0.281  Sum_probs=54.4

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      ++|||.|||..+=+     +.|+.+|++||+                         +.++..++      +.+-++|.|.
T Consensus         7 ~~lfV~nLp~~~te-----~~L~~~F~~~G~-------------------------v~~v~i~~d~~~g~~kg~afV~f~   56 (85)
T d1fxla2           7 ANLYVSGLPKTMTQ-----KELEQLFSQYGR-------------------------IITSRILVDQVTGVSRGVGFIRFD   56 (85)
T ss_dssp             CEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEES
T ss_pred             CEEEEeCCCCCCCH-----HHHHHHHHHhCC-------------------------ccccccccccccccCCCeeEEEEc
Confidence            57999999986543     456788886654                         55554443      2235899999


Q ss_pred             CHHHHHHHHHHhcCCccCC--cceEEEEe
Q psy258          113 SSAAAAKARINLHQSVFAS--SKINVYFV  139 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g--~~lrIyFA  139 (238)
                      +.++|.+|.+.|++..+.|  .+++|.||
T Consensus        57 ~~~~a~~Ai~~lng~~~~G~~~~i~V~~A   85 (85)
T d1fxla2          57 KRIEAEEAIKGLNGQKPSGATEPITVKFA   85 (85)
T ss_dssp             SHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CHHHHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence            9999999999999999987  46888886

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.41  E-value=1.6e-07  Score=68.77  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=60.0

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAA  117 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA  117 (238)
                      .+||||.||+..+=+     +.|+.+|++||.+.                       .+ ...-++.+=++|.|.+.++|
T Consensus        16 ~~~l~V~nL~~~~te-----~~l~~~F~~~g~v~-----------------------~~-~~~~~~~~~afV~f~~~~~A   66 (96)
T d1fjca_          16 ARTLLAKNLSFNITE-----DELKEVFEDALEIR-----------------------LV-SQDGKSKGIAYIEFKSEADA   66 (96)
T ss_dssp             GGEEEEESCCSSCCH-----HHHHHHHCSEEEEC-----------------------CE-EETTEEEEEEEEEESSHHHH
T ss_pred             CCEEEEeCCCCCCCH-----HHHHHHHHhcccce-----------------------ee-eecCccccEEEEEeCCHHHH
Confidence            369999999987543     45678899777643                       11 12223445599999999999


Q ss_pred             HHHHHHhcCCccCCcceEEEEeCCCC
Q psy258          118 AKARINLHQSVFASSKINVYFVQPMT  143 (238)
Q Consensus       118 ~~Ar~~L~~~~f~g~~lrIyFAq~~t  143 (238)
                      .+|+..|++..|.|+.|+|.|+++..
T Consensus        67 ~~A~~~l~~~~~~gr~i~V~~a~~k~   92 (96)
T d1fjca_          67 EKNLEEKQGAEIDGRSVSLYYTGEKG   92 (96)
T ss_dssp             HHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred             HHHHHHcCCCEECCEEEEEEEeCCCC
Confidence            99999999999999999999998743

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.2e-07  Score=68.74  Aligned_cols=76  Identities=21%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVN  110 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVV  110 (238)
                      .-|++|||.||+..+-+     +.|+.+|++||+                         +......+     +.|-++|.
T Consensus        16 ~~~~~lfV~nLp~~~te-----~~L~~~F~~~G~-------------------------i~~~~~~~~~~~~~~g~afV~   65 (101)
T d1x5oa1          16 QDPTNLYISNLPLSMDE-----QELENMLKPFGQ-------------------------VISTRILRDSSGTSRGVGFAR   65 (101)
T ss_dssp             CCTTEEEEESCCTTCCH-----HHHHHTTTTTSC-------------------------EEEEEEEECSSSCEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCH-----HHHHHHHhhccc-------------------------ccceeeecccccccccceeEE
Confidence            33789999999987644     356678886655                         44343333     23469999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|+..|+|..+.|+++++..+++
T Consensus        66 f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~P   96 (101)
T d1x5oa1          66 MESTEKCEAVIGHFNGKFIKTPPGVSAPTEP   96 (101)
T ss_dssp             ESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred             eCCHHHHHHHHHHhCCCEECCcCCccCCCCC
Confidence            9999999999999999999998877655544

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=2.7e-07  Score=65.84  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=57.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~  114 (238)
                      +++|+|.|||..+-+     +.|+.+|++||.+.                      ..+.+..-   ++.|-++|.|.+.
T Consensus         9 ~~~l~v~nLp~~~~~-----~di~~~F~~~~~~~----------------------~~~~~~~~~~g~~~G~afV~f~~~   61 (86)
T d2cqpa1           9 PTIIKVQNMPFTVSI-----DEILDFFYGYQVIP----------------------GSVCLKYNEKGMPTGEAMVAFESR   61 (86)
T ss_dssp             SEEEEEESCCTTCCH-----HHHHHHTTTSCCCT----------------------TTCEEEECSSSCEEEEEEEEESCH
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHhhcccce----------------------eEEEEEeCCCCCcceEEEEEEcCc
Confidence            457999999986555     45667899887754                      11222222   2234699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEe
Q psy258          115 AAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      ++|.+|.+.|++..++|.+++|.+|
T Consensus        62 e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1          62 DEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             HHHHHHHHHTTTCEETTEECEEEES
T ss_pred             HHHHHHHHHcCCCEECCEEEEEEEC
Confidence            9999999999999999999998875

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.2e-06  Score=62.11  Aligned_cols=61  Identities=21%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             HHHHHHHhhhhcCCceEEEecC--------CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258           81 LKEQIETLLSQFGKPKSFQYLK--------SFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus        81 ~~~~~~~~~~~~~~iv~fv~Lk--------SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +++.|++.+++||.+.++...+        +.|+++|.|.+.++|.+|...|+|..|.|+.+++.|...
T Consensus        27 i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~~   95 (104)
T d1o0pa_          27 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP   95 (104)
T ss_dssp             HHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEECH
T ss_pred             HHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcCH
Confidence            3445666666888888877543        337999999999999999999999999999999999764

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=4.6e-07  Score=63.77  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec----CCCCeEEEEeCCH
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL----KSFRRMRVNYESS  114 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L----kSF~RiiVVF~~~  114 (238)
                      +|++|.|||..+-.     +.|+.+|++||+|.                         .+...    ...+-++|.|.+.
T Consensus         1 Ttv~V~nlp~~~t~-----~~l~~~F~~~G~I~-------------------------~v~~~~~~~~~~~~afV~F~~~   50 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQ-----NKVYKYFKHCGPII-------------------------HVDVADSLKKNFRFARIEFARY   50 (75)
T ss_dssp             CEEEEEEECTTCCH-----HHHHHHHGGGSCEE-------------------------EEEEEECTTSSSEEEEEEESSH
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHhcCCceE-------------------------EEEEEeeccccceEEEEEEcch
Confidence            58999999976533     46778899776653                         33322    2345799999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEE
Q psy258          115 AAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      ++|.+|. .+++..|.|+.+.|..
T Consensus        51 ~~a~~Al-~~~~~~i~g~~i~V~~   73 (75)
T d2ghpa2          51 DGALAAI-TKTHKVVGQNEIIVSH   73 (75)
T ss_dssp             HHHHHHH-TTTTCEETTEECEEEE
T ss_pred             HHhHHHH-HhcCcEECCEEEEEEE
Confidence            9999996 5899899998888765

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.3e-06  Score=64.96  Aligned_cols=62  Identities=16%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             CcEEEec--CCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHH
Q psy258           39 KSLIITN--LNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAA  116 (238)
Q Consensus        39 ~TLiitn--L~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~ea  116 (238)
                      ++|+|+|  |+..+-+     +.|+.+|+                         .||.+..+...+..+.++|.|.+.++
T Consensus        19 ~~l~V~ng~L~~~vte-----~~L~~~F~-------------------------~~G~i~~i~~~~~k~~aFV~f~~~e~   68 (101)
T d2cq2a1          19 QSLVVANGGLGNGVSR-----NQLLPVLE-------------------------KCGLVDALLMPPNKPYSFARYRTTEE   68 (101)
T ss_dssp             SEEEEETCTGGGTCCH-----HHHHHHHH-------------------------HHSCEEEEECCTTCSCEEEEESSHHH
T ss_pred             ceEEEECCCCCCCCCH-----HHHHHHHH-------------------------hhCcccEEeeccCccEEEEEECCHHH
Confidence            5999988  8876554     45667788                         55777888888999999999999999


Q ss_pred             HHHHHHHhcCCccC
Q psy258          117 AAKARINLHQSVFA  130 (238)
Q Consensus       117 A~~Ar~~L~~~~f~  130 (238)
                      |.+|+..|+|..+.
T Consensus        69 A~~A~~~lng~~i~   82 (101)
T d2cq2a1          69 SKRAYVTLNGKEVV   82 (101)
T ss_dssp             HHHHHHHTTTCEEE
T ss_pred             HHHHHHHhCCCCCC
Confidence            99999999998664

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.5e-06  Score=63.89  Aligned_cols=73  Identities=15%  Similarity=0.197  Sum_probs=54.6

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEEEE
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMRVN  110 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~RiiVV  110 (238)
                      |.||||.||+..+=+     +.|+++|++||                          ++.....+       +.+-++|.
T Consensus        15 ~~~v~V~nLp~~~te-----~~l~~~f~~~g--------------------------~~~~~~~~~~~~~g~~~g~afV~   63 (104)
T d1wi8a_          15 PYTAFLGNLPYDVTE-----ESIKEFFRGLN--------------------------ISAVRLPREPSNPERLKGFGYAE   63 (104)
T ss_dssp             CEEEEEESCCSSCCH-----HHHHHHTTTSC--------------------------EEEEECCBCSSCTTSBCSCEEEE
T ss_pred             CCEEEEeCCCCcCCH-----HHHHHHHHHhc--------------------------cccceeeeeeccCCCcceeeeEE
Confidence            469999999976544     45667888554                          33333332       22469999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      |.+.++|.+|+ .+++..|.|..|+|.||.+.
T Consensus        64 f~~~e~a~~~~-~~~~~~~~gr~l~V~~a~~~   94 (104)
T d1wi8a_          64 FEDLDSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             ESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             ECCHHHHHHHH-HcCCCEECCEEEEEEECCCC
Confidence            99999997665 69999999999999998763

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.9e-06  Score=64.28  Aligned_cols=72  Identities=17%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~  112 (238)
                      .+|||.||+..+-+     +.|+.+|++||+|.                         .+...      ++.|-++|.|.
T Consensus        21 ~~lfVgnLp~~~te-----~~L~~~F~~~G~i~-------------------------~~~i~~d~~~~~~kg~aFV~f~   70 (103)
T d1x4ba1          21 RKLFIGGLSFETTE-----ESLRNYYEQWGKLT-------------------------DCVVMRDPASKRSRGFGFVTFS   70 (103)
T ss_dssp             TEEEEECCTTCCCH-----HHHHHHHTSSCCCS-------------------------EEEEECCTTTSSCCSEEEEECS
T ss_pred             CEEEEeCCCCcCCH-----HHHHHHHHhhCccc-------------------------ceeecccccCCCccCeEEEEEC
Confidence            58999999987644     35678899776654                         33332      45577999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|.. +++..|.|+.++|-+|++
T Consensus        71 ~~~~a~~al~-~~~~~l~G~~i~V~~a~~   98 (103)
T d1x4ba1          71 SMAEVDAAMA-ARPHSIDGRVVEPKRAVA   98 (103)
T ss_dssp             SHHHHHHHHT-SCSEEETTEEEEEECCSS
T ss_pred             CHHHHHHHHH-hCCCeECCEEEEEEECcc
Confidence            9999999975 677789999999999876

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=9.5e-07  Score=63.59  Aligned_cols=74  Identities=9%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec-CCCCeEEEEeCCHH
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL-KSFRRMRVNYESSA  115 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L-kSF~RiiVVF~~~e  115 (238)
                      -.++|||.||+..+=+     +.|+.+|++||++                         ..+... ++.+-++|.|.+.+
T Consensus         4 ~s~~lfV~nLp~~~te-----~~L~~~F~~~G~v-------------------------~~v~~~~~~~gfafV~f~~~~   53 (88)
T d1wf0a_           4 GSSGVFVGRCTGDMTE-----DELREFFSQYGDV-------------------------MDVFIPKPFRAFAFVTFADDQ   53 (88)
T ss_dssp             CCCEEEEESCCSSSCH-----HHHHHHSTTTSCC-------------------------CEEECCSSCCSCCEEECSCHH
T ss_pred             CCCEEEEeCCCCCCCH-----HHHHHHHHHcCCc-------------------------eEEEEeeccCceEEEEECCHH
Confidence            4679999999987544     4567888866654                         444333 34455999999999


Q ss_pred             HHHHHHHHhcCCccCCcceEEEEeCCC
Q psy258          116 AAAKARINLHQSVFASSKINVYFVQPM  142 (238)
Q Consensus       116 aA~~Ar~~L~~~~f~g~~lrIyFAq~~  142 (238)
                      +|.+|..  ++..+.|+.|+|.+|++.
T Consensus        54 ~a~~a~~--~~~~i~g~~l~v~~a~~k   78 (88)
T d1wf0a_          54 IAQSLCG--EDLIIKGISVHISNAEPK   78 (88)
T ss_dssp             HHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred             HHHHHHh--CCCEECCEEeEEEeCCCC
Confidence            9999864  666789999999999763

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.6e-06  Score=59.69  Aligned_cols=75  Identities=23%  Similarity=0.167  Sum_probs=55.0

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-------CCCeEEEEeC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-------SFRRMRVNYE  112 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-------SF~RiiVVF~  112 (238)
                      .|||.|||..+-+     +.|+.+|++||.                        .+..+...+       +.|=++|.|.
T Consensus         3 rLyV~nLp~~~te-----~~l~~~f~~~g~------------------------~i~~v~~~~~~~~~~~~rg~aFV~F~   53 (96)
T d2disa1           3 RLFIGGIPKMKKR-----EEILEEIAKVTE------------------------GVLDVIVYASAADKMKNRGFAFVEYE   53 (96)
T ss_dssp             EEEEECCCTTSCH-----HHHHHHHHHHST------------------------TEEEEECCSSSCTTTTTCCEEEEEES
T ss_pred             EEEEcCCCCcCCH-----HHHHHHHHHhCC------------------------cceEEEEeeeccccccCCCeEEEEEc
Confidence            4999999986555     356677885543                        133444433       3345999999


Q ss_pred             CHHHHHHHHHHhcC--CccCCcceEEEEeCCCC
Q psy258          113 SSAAAAKARINLHQ--SVFASSKINVYFVQPMT  143 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~--~~f~g~~lrIyFAq~~t  143 (238)
                      +.++|..|+..|++  +.+.|+.++|.||++..
T Consensus        54 ~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p~~   86 (96)
T d2disa1          54 SHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI   86 (96)
T ss_dssp             SHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred             CHHHHHHHHHHHcCCCeEECCEEEEEEEcCCCC
Confidence            99999999999975  45678899999998744

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3e-06  Score=62.21  Aligned_cols=76  Identities=16%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec---CCCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL---KSFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L---kSF~RiiVVF~~~  114 (238)
                      .+||||+|||..+-+     +.|+.+|++||.+.                      ..+.+..-   ++.|-++|.|.+.
T Consensus         8 ~~~v~v~nLp~~~t~-----~~l~~~F~~~g~i~----------------------~~~~~~~~~~g~~~G~afV~F~s~   60 (103)
T d2cpya1           8 KVCAHITNIPFSITK-----MDVLQFLEGIPVDE----------------------NAVHVLVDNNGQGLGQALVQFKNE   60 (103)
T ss_dssp             CCEEEEESCCTTSCH-----HHHHHHTTTSCCCS----------------------TTEEECCCTTSSCSSCEEEECSSH
T ss_pred             ceEEEEeCCCCCCCH-----HHHhhhhcccceEE----------------------EEEEEEeCCCCCcCccEEEEECCH
Confidence            469999999986554     46678899887654                      22223222   3467899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|.. +++..|+|+.++|..+..
T Consensus        61 ~~a~~Al~-~n~~~i~gr~i~V~~~~~   86 (103)
T d2cpya1          61 DDARKSER-LHRKKLNGREAFVHVVTL   86 (103)
T ss_dssp             HHHHHHGG-GCSEEETTEEEEEEEECH
T ss_pred             HHHHHHHh-cCCCeECCcEEEEEECCH
Confidence            99999985 899999999999988643

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=2e-06  Score=60.75  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=52.8

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEe------cCCCCeEEEEeCC
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQY------LKSFRRMRVNYES  113 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~------LkSF~RiiVVF~~  113 (238)
                      .|||.|||..+-+ +    .|+.+|++||+|.                         .+..      -++.|=++|.|.+
T Consensus         2 klfV~nLp~~~te-~----~l~~~F~~~G~i~-------------------------~v~i~~d~~tg~~kG~aFV~f~~   51 (77)
T d1uawa_           2 KMFIGGLSWQTTQ-E----GLREYFGQFGEVK-------------------------ECLVMRDPLTKRSRGFGFVTFMD   51 (77)
T ss_dssp             CEEEESCCSSCCS-H----HHHHHHTTTSCCC-------------------------CEEEECCCCSSSCSSEEEECCCC
T ss_pred             EEEEeCCCCcCCH-H----HHHHHHHHhCCcc-------------------------eeeeecccCCCCccceEEEEECC
Confidence            4899999987666 3    4567888776653                         3322      2355679999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .++|.+|.. +++..++|+.++|..|
T Consensus        52 ~~~a~~al~-~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_          52 QAGVDKVLA-QSRHELDSKTIDPKVA   76 (77)
T ss_dssp             TTHHHHHHH-TTTCCCSSCCCEEEEC
T ss_pred             HHHHHHHHH-cCCCEECCeEEEEEEC
Confidence            999999996 6888899999988765

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.1e-06  Score=60.57  Aligned_cols=65  Identities=25%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeCCH
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYESS  114 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~~~  114 (238)
                      |||.|||..+=+     +.|+.+|++|                         |++..+...+      +.+-++|.|.+.
T Consensus         1 lyV~nLp~~~te-----~~l~~~F~~~-------------------------G~v~~~~~~~~~~~~~~~g~afV~f~~~   50 (72)
T d1x4ea1           1 LYIRGLQPGTTD-----QDLVKLCQPY-------------------------GKIVSTKAILDKTTNKCKGYGFVDFDSP   50 (72)
T ss_dssp             EEEESCCTTCCH-----HHHHTTSTTT-------------------------SCEEEEEEECCSSSCSCCSEEEEEESCH
T ss_pred             CEEeCCCCcCCH-----HHHHHHHhhh-------------------------ccccccccccccccccccceeEEEECCH
Confidence            799999986655     3566788855                         4555544433      446799999999


Q ss_pred             HHHHHHHHHhcCCccCCcceE
Q psy258          115 AAAAKARINLHQSVFASSKIN  135 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lr  135 (238)
                      ++|.+|...|++..|.|+.+|
T Consensus        51 ~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1          51 SAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             HHHHHHHHHHHHHTCCEESCC
T ss_pred             HHHHHHHHHhCCCEECCEECc
Confidence            999999999999999987654

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.9e-06  Score=62.87  Aligned_cols=72  Identities=17%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .||||.||+..+-+     +.|+.+|++|                         |.+.++..++      +-|=++|.|.
T Consensus        19 ~tifV~nL~~~~te-----~~l~~~F~~~-------------------------G~V~~v~i~~d~~tg~~kG~afV~F~   68 (101)
T d2cq4a1          19 RTVFCMQLAARIRP-----RDLEDFFSAV-------------------------GKVRDVRIISDRNSRRSKGIAYVEFC   68 (101)
T ss_dssp             TEEEEESCCTTCCH-----HHHHHHHTTT-------------------------SCEEEEEECCSCCSSSCCCCEEEEES
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHcCC-------------------------CeEEEEEeeecCCCccccceEEEEEC
Confidence            59999999986555     3556788855                         5555565554      2345999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|. .|++..|.|..|+|.++++
T Consensus        69 ~~e~a~~A~-~l~g~~~~G~~l~V~~a~~   96 (101)
T d2cq4a1          69 EIQSVPLAI-GLTGQRLLGVPIIVQASQA   96 (101)
T ss_dssp             CGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred             CHHHHHHHH-HHCCCEECCEEEEEEECCC
Confidence            999999998 5999999999999999864

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=6.3e-06  Score=59.81  Aligned_cols=73  Identities=16%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEE
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVN  110 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVV  110 (238)
                      -.++|||.|||..+=+     +.|+.+|++||+|                         ..+...+      +.|=++|.
T Consensus         7 ~~~~lfV~nLp~~~te-----~~l~~~F~~~G~i-------------------------~~v~i~~d~~tg~srG~aFV~   56 (90)
T d2cqga1           7 KTSDLIVLGLPWKTTE-----QDLKEYFSTFGEV-------------------------LMVQVKKDLKTGHSKGFGFVR   56 (90)
T ss_dssp             CCCCEEEESCCSSCCH-----HHHHHHHGGGSCE-------------------------EEEEEEECSSSCSEEEEEEEE
T ss_pred             CCCeEEEECCCCCCCH-----HHHHHHHHhhccc-------------------------ceeeeccCCCCcccCCEEEEE
Confidence            3579999999976544     4677888866554                         4433322      23458999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|....+  .+.|+.++|.+|.+
T Consensus        57 f~~~~~a~~al~~~~--~l~Gr~i~v~~a~~   85 (90)
T d2cqga1          57 FTEYETQVKVMSQRH--MIDGRWCDCKLPNS   85 (90)
T ss_dssp             ESSHHHHHHHHHSCE--EETTEEEEEECCCT
T ss_pred             ECCHHHHHHHHhcCC--ccCCEEeEEEeCCC
Confidence            999999999988554  57889999999876

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1e-05  Score=59.67  Aligned_cols=72  Identities=17%  Similarity=0.151  Sum_probs=56.0

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      ++|||.||+..+-+     +.|+.+|++|                         |++.++..++      +.|=++|.|.
T Consensus        11 ~~lfV~nLp~~~te-----~~l~~~F~~~-------------------------G~i~~v~i~~d~~tg~~kg~afV~f~   60 (103)
T d2cqda1          11 TKIFVGGLPYHTTD-----ASLRKYFEGF-------------------------GDIEEAVVITDRQTGKSRGYGFVTMA   60 (103)
T ss_dssp             SEEEEECCCSSCCH-----HHHHHHHHTT-------------------------SCEEEEEESCCSSSCCCCSEEEEEES
T ss_pred             cEEEEeCCCCcCcH-----HHHHHHHhhc-------------------------ccccceeccccccccccCCeEEEEEC
Confidence            47999999986544     3456778855                         5566666554      3345999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      +.++|.+|...+++ .+.|+.++|.+|..
T Consensus        61 ~~~~A~~Ai~~~~~-~l~Gr~l~V~~a~~   88 (103)
T d2cqda1          61 DRAAAERACKDPNP-IIDGRKANVNLAYL   88 (103)
T ss_dssp             SHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred             CHHHHHHHHHHCCC-cCCCEEEEEEEcCC
Confidence            99999999999887 58999999999875

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.5e-05  Score=55.49  Aligned_cols=70  Identities=11%  Similarity=0.171  Sum_probs=52.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .+|||.|||..+=+     +.|+.+|++||.                         +..+....      +.|-++|.|.
T Consensus         3 r~lfV~nLp~~~te-----~~l~~~F~~~G~-------------------------i~~~~~~~~~~~~~~~g~afV~f~   52 (79)
T d1l3ka2           3 KKIFVGGIKEDTEE-----HHLRDYFEQYGK-------------------------IEVIEIMTDRGSGKKRGFAFVTFD   52 (79)
T ss_dssp             SEEEEECCTTTCCH-----HHHHHHHTTTSC-------------------------EEEEEEEECTTTCCEEEEEEEEES
T ss_pred             CEEEECCCCCcCCH-----HHHHHHHHHhcc-------------------------ccccccccCCCCcccccEEEEEEc
Confidence            58999999986555     456678886655                         44444332      2345999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      +.++|.+|. .+++..|.|+.++|..|
T Consensus        53 ~~e~~~~al-~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2          53 DHDSVDKIV-IQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             SHHHHHHHH-HCSCCEETTEECEEEEC
T ss_pred             CHHHHHHHH-HhCCCEECCEEEEEEEC
Confidence            999888887 57999999999998765

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.7e-05  Score=56.60  Aligned_cols=71  Identities=17%  Similarity=0.197  Sum_probs=53.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYES  113 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~  113 (238)
                      .||||.|||..+=+     +.|+.+|++||+                         +.++...+     +.|=++|.|.+
T Consensus         7 rtvfV~nlp~~~te-----~~l~~~F~~~G~-------------------------v~~v~l~~~~~~~~kG~afV~f~~   56 (85)
T d1zh5a2           7 RSVYIKGFPTDATL-----DDIKEWLEDKGQ-------------------------VLNIQMRRTLHKAFKGSIFVVFDS   56 (85)
T ss_dssp             TEEEEECCCTTCCH-----HHHHHHHTTSCC-------------------------EEEEEEEECTTCCEEEEEEEEESC
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHHHhcc-------------------------cccceeeeeccCCcceEEEEEEcC
Confidence            59999999986543     456788886655                         44443332     22469999999


Q ss_pred             HHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          114 SAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       114 ~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .++|.+|.. +++..|.|+.|+|.+..
T Consensus        57 ~e~a~~al~-~~~~~~~g~~l~v~~~~   82 (85)
T d1zh5a2          57 IESAKKFVE-TPGQKYKETDLLILFKD   82 (85)
T ss_dssp             HHHHHHHHT-CCCCEETTEECEEEEGG
T ss_pred             HHHHHHHHH-HCCCEECCEEEEEEEcC
Confidence            999999974 68899999999998853

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.2e-06  Score=63.03  Aligned_cols=78  Identities=8%  Similarity=0.094  Sum_probs=56.1

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCHHHHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESSAAAAK  119 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~eaA~~  119 (238)
                      .|||.||+..+-+ +    .|+++|++||++....              +.....+.....-++.|=++|.|.+.++|..
T Consensus         3 rlyVgNLp~~~te-~----~l~~~F~~~g~~~~~~--------------~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~   63 (90)
T d1u2fa_           3 RLYVGNIPFGITE-E----AMMDFFNAQMRLGGLT--------------QAPGNPVLAVQINQDKNFAFLEFRSVDETTQ   63 (90)
T ss_dssp             EEEECSCCTTCCT-T----HHHHHHHHHHTTTTSC--------------CSSSCSEEECCEETTTTEEEEEESSCTTTTT
T ss_pred             EEEEcCCCCccch-H----HHHHHHHhhCcEEEEE--------------EeccceeeecccCCCceEEEEEeCCHHHHHH
Confidence            6999999987777 3    4567888888764110              0011223333444566779999999999999


Q ss_pred             HHHHhcCCccCCcceEEE
Q psy258          120 ARINLHQSVFASSKINVY  137 (238)
Q Consensus       120 Ar~~L~~~~f~g~~lrIy  137 (238)
                      |. .|++..|.|+.|+|.
T Consensus        64 a~-~l~g~~~~Gr~l~V~   80 (90)
T d1u2fa_          64 AM-AFDGIIFQGQSLKIR   80 (90)
T ss_dssp             GG-GGSSCCSSSSCCCCB
T ss_pred             HH-hhCCcEECCEEEEEC
Confidence            97 599999999999875

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.7e-05  Score=59.12  Aligned_cols=58  Identities=17%  Similarity=0.292  Sum_probs=50.0

Q ss_pred             HHHHHHhhhhcCCceEEEecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEe
Q psy258           82 KEQIETLLSQFGKPKSFQYLK-----SFRRMRVNYESSAAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus        82 ~~~~~~~~~~~~~iv~fv~Lk-----SF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      .+.+++++++||.+.++...+     +.|.++|.|.+.++|.+|...|+|..|.|+.|+|.|+
T Consensus        41 ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s  103 (104)
T d1jmta_          41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             HHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence            345677778999999988764     3477999999999999999999999999999999885

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.6e-05  Score=54.67  Aligned_cols=71  Identities=14%  Similarity=0.109  Sum_probs=53.6

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~  112 (238)
                      .+|||+|||..+=+     +.|+.+|++||+                         +..+..++      +.|=++|.|.
T Consensus         7 ~~lfV~nlp~~~te-----~~l~~~F~~~G~-------------------------i~~v~i~~d~~tg~~kG~afV~f~   56 (84)
T d1l3ka1           7 RKLFIGGLSFETTD-----ESLRSHFEQWGT-------------------------LTDCVVMRDPNTKRSRGFGFVTYA   56 (84)
T ss_dssp             GEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEES
T ss_pred             cEEEEECCCCCCCH-----HHHHHHHHhhcc-------------------------ccceeecccccCCCcccEEEEEEc
Confidence            68999999987644     456788886655                         54444332      2346999999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      +.++|.+|.. +++..++|+.++|--|.
T Consensus        57 ~~~~a~~ai~-~~~~~i~Gr~i~V~~A~   83 (84)
T d1l3ka1          57 TVEEVDAAMN-ARPHKVDGRVVEPKRAV   83 (84)
T ss_dssp             SHHHHHHHHH-TCSCEETTEECEEEECC
T ss_pred             CHHHHHHHHH-hCCCEECCEEEEEEeee
Confidence            9999999986 57788999999987664

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.2e-05  Score=52.62  Aligned_cols=67  Identities=18%  Similarity=0.123  Sum_probs=50.1

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEEeCCH
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVNYESS  114 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVVF~~~  114 (238)
                      |||.|||..+-+     +.|+++|++||+                         +.++...+      +-|=++|.|.+.
T Consensus         2 lfV~nl~~~~te-----~~l~~~F~~~G~-------------------------i~~~~i~~d~~t~~~kg~afV~f~~~   51 (75)
T d1hd0a_           2 MFIGGLSWDTTK-----KDLKDYFSKFGE-------------------------VVDCTLKLDPITGRSRGFGFVLFKES   51 (75)
T ss_dssp             EEEECCCTTCCH-----HHHHHHHHTTSC-------------------------EEEEECCCBTTTTBCCSEEEEEESSH
T ss_pred             EEEeCCCCcCCH-----HHHHHHHHhhcc-------------------------ccccccccCCCCCCcCceEEEEECCH
Confidence            799999986555     456688886655                         44444332      345699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEE
Q psy258          115 AAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      ++|.+|.. +++..+.|+.++|..
T Consensus        52 ~~a~~Al~-~~~~~l~Gr~i~V~r   74 (75)
T d1hd0a_          52 ESVDKVMD-QKEHKLNGKVIDPKR   74 (75)
T ss_dssp             HHHHHHHH-TCCCCBTTBCCEECC
T ss_pred             HHHHHHHh-cCCCEECCCEEEeeE
Confidence            99999987 677789998888743

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.9e-05  Score=55.34  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             EEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC------CCeEEEEeCCH
Q psy258           41 LIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS------FRRMRVNYESS  114 (238)
Q Consensus        41 LiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS------F~RiiVVF~~~  114 (238)
                      |||.|||.++=+     +.|+.+|++|                         |++..+...+.      .|=++|.|.+.
T Consensus         2 lfVgnLp~~~te-----~~l~~~F~~~-------------------------G~I~~v~i~~d~~t~~~rG~~FV~f~~~   51 (75)
T d1x0fa1           2 IFVGGLSPDTPE-----EKIREYFGGF-------------------------GEVESIELPMDNKTNKRRGFCFITFKEE   51 (75)
T ss_dssp             EEEESCCSSCCH-----HHHHHHHHHH-------------------------SCEEEEECCCCTTTCCTTCCEEEEESSS
T ss_pred             EEEcCCCCCCCH-----HHHHHHHHHh-------------------------CCcccccccccccccccccEEEEEECCH
Confidence            799999986543     4566778855                         44555544432      23499999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEe
Q psy258          115 AAAAKARINLHQSVFASSKINVYFV  139 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFA  139 (238)
                      ++|.+|... ++..++|+.++|-.|
T Consensus        52 ~~a~~al~~-~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1          52 EPVKKIMEK-KYHNVGLSKCEIKVA   75 (75)
T ss_dssp             HHHHHHTTC-SSCCBTTBCCEEECC
T ss_pred             HHHHHHHhh-CCCEECCEEeEEEEC
Confidence            999999864 445588888887654

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.8e-05  Score=54.64  Aligned_cols=74  Identities=19%  Similarity=0.089  Sum_probs=56.0

Q ss_pred             CCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEEE
Q psy258           37 LPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRVN  110 (238)
Q Consensus        37 ~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiVV  110 (238)
                      -..+|+|.|||-.+-+     +.|+.+|++|                         +.+...+.+.      +.|-++|-
T Consensus        14 ~~~~v~v~nLP~~~te-----~dI~~~F~~~-------------------------g~v~~~v~~~~~~~~~~kG~afV~   63 (104)
T d1wg5a_          14 NDGFVRLRGLPFGCSK-----EEIVQFFSGL-------------------------EIVPNGMTLPVDFQGRSTGEAFVQ   63 (104)
T ss_dssp             CCCEEEEESCCTTCCH-----HHHHHHTTTC-------------------------CEEEEEEECCBCSSSCBCSEEEEE
T ss_pred             CCcEEEEeCCCCCCCH-----HHHHHHHHhc-------------------------CCceEEEEEEeCCCCCcceEEEEE
Confidence            3468999999976554     4566788855                         4444433332      22569999


Q ss_pred             eCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          111 YESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       111 F~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      |.+.++|.+|+. +++..|.++.++|..+..
T Consensus        64 F~~~e~a~~a~~-~~~~~i~gR~i~V~~~~~   93 (104)
T d1wg5a_          64 FASQEIAEKALK-KHKERIGHRYIEIFKSSR   93 (104)
T ss_dssp             ESSHHHHHHHHT-TTTCCSSSSCCEEEEECT
T ss_pred             eCCHHHHHHHHh-hCCCEEcceEEEEEECCH
Confidence            999999998885 899999999999999876

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.4e-05  Score=55.42  Aligned_cols=75  Identities=8%  Similarity=0.104  Sum_probs=54.8

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCC----CCeEEEEe
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKS----FRRMRVNY  111 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkS----F~RiiVVF  111 (238)
                      .-+.||||.|||-.+=+     +.|+.+|++||                         .+.-......    .+-++|.|
T Consensus        13 ~~~~~v~v~nLp~~~te-----~dl~~~F~~~~-------------------------~~~v~~~~~~~g~~~G~afVeF   62 (102)
T d1weza_          13 TTGHCVHMRGLPYRATE-----NDIYNFFSPLN-------------------------PMRVHIEIGPDGRVTGEADVEF   62 (102)
T ss_dssp             SSSCEEEEESCCTTCCH-----HHHHHSSCSCC-------------------------CSEEEEEESSSSCEEEEEEEEC
T ss_pred             CCCCEEEEeCCCCcCCH-----HHHHHHHhccC-------------------------cceeeeEEecCCcceEEEEEEE
Confidence            44569999999976554     45567777553                         2211222222    24599999


Q ss_pred             CCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          112 ESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       112 ~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .+.++|.+|+. +++..|.|+.++|+++..
T Consensus        63 ~~~~~a~~Al~-~~~~~i~gR~I~V~~s~~   91 (102)
T d1weza_          63 ATHEDAVAAMA-KDKANMQHRYVELFLNST   91 (102)
T ss_dssp             SSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred             CCHHHHHHHHH-cCCCEECCEEEEEEEcCC
Confidence            99999999975 899999999999999876

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3.4e-05  Score=57.54  Aligned_cols=76  Identities=11%  Similarity=0.044  Sum_probs=55.3

Q ss_pred             CCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEE---EecCCCCeEEEEeCCH
Q psy258           38 PKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSF---QYLKSFRRMRVNYESS  114 (238)
Q Consensus        38 p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~f---v~LkSF~RiiVVF~~~  114 (238)
                      ..||||+|||-.+=+     +.|+.+|++||.+.                      ..+-.   ..-++.|-++|.|.+.
T Consensus        18 ~~~i~v~nLp~~~t~-----~di~~~F~~~g~~~----------------------~~~~~~~~~~g~~~G~afVeF~~~   70 (112)
T d1wela1          18 GFCVYLKGLPFEAEN-----KHVIDFFKKLDIVE----------------------DSIYIAYGPNGKATGEGFVEFRNE   70 (112)
T ss_dssp             CCEEEEECCCTTCCH-----HHHHHHSCSSCBCT----------------------TTCEEEECTTSSEEEEEEEEBSSS
T ss_pred             CeEEEEecCCCcCcH-----HHHhhHHhhccccc----------------------cceeeecCcccceeeEEEEEECCH
Confidence            459999999975533     45678888777653                      11111   1122335699999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          115 AAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      ++|.+|+. +++..|+|..++|..+..
T Consensus        71 e~a~~al~-~~~~~i~gR~i~V~~~~~   96 (112)
T d1wela1          71 ADYKAALC-RHKQYMGNRFIQVHPITK   96 (112)
T ss_dssp             HHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred             HHHHHHHH-cCCCcCCCEEEEEEEcCh
Confidence            99999885 899999999999987643

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00011  Score=57.41  Aligned_cols=75  Identities=12%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             CCCCcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecC------CCCeEEE
Q psy258           36 QLPKSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLK------SFRRMRV  109 (238)
Q Consensus        36 ~~p~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~Lk------SF~RiiV  109 (238)
                      +-.++|+|+||+..+-+     +.|+.+|++||+                         +..+...+      +.|-++|
T Consensus        95 ~~~~~i~V~~lp~~~te-----~~L~~~f~~~G~-------------------------v~~~~i~~~~~~~~~~g~~fV  144 (183)
T d1u1qa_          95 LTVKKIFVGGIKEDTEE-----HHLRDYFEQYGK-------------------------IEVIEIMTDRGSGKKRGFAFV  144 (183)
T ss_dssp             CCCSEEEEECCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEE
T ss_pred             cccceeEEccCCCcCCH-----HHHhhhhccCCc-------------------------eeeeeeecccccCccceeEEE
Confidence            33469999999876543     467788886655                         44443332      2346999


Q ss_pred             EeCCHHHHHHHHHHhcCCccCCcceEEEEeCC
Q psy258          110 NYESSAAAAKARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       110 VF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|.+.++|.+|.. +++..++|..++|.+|.+
T Consensus       145 ~f~~~e~A~~Al~-~~~~~~~G~~i~V~~A~~  175 (183)
T d1u1qa_         145 TFDDHDSVDKIVI-QKYHTVNGHNCEVRKALS  175 (183)
T ss_dssp             EESCHHHHHHHHT-SSCEEETTEEEEEEECCC
T ss_pred             EECCHHHHHHHHH-hCCCeECCEEEEEEecCC
Confidence            9999999999986 677778999999999865

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00024  Score=52.99  Aligned_cols=72  Identities=11%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             cEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH-HHHH
Q psy258           40 SLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS-AAAA  118 (238)
Q Consensus        40 TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~-eaA~  118 (238)
                      +.||.||+..+=+     +.|+++|+                         .||++..+..++.-+=++|.|.+. ++|.
T Consensus        13 ~~fvgnL~~~~te-----e~Lk~~F~-------------------------~fG~V~~v~i~~~kg~gfV~F~~~~~~A~   62 (113)
T d1owxa_          13 LKFSGDLDDQTCR-----EDLHILFS-------------------------NHGEIKWIDFVRGAKEGIILFKEKAKEAL   62 (113)
T ss_dssp             EEEEESCCSSCCH-----HHHHHHTC-------------------------SSCCEEEEECCTTCSEEEEEESSCHHHHH
T ss_pred             EEEECCCCCCCCH-----HHHHHHHH-------------------------hcCChheEEEecCCceEEEEecCcHHHHH
Confidence            5678999986554     45567777                         667788888899988899999986 7899


Q ss_pred             HHHHHhcCCccCCcceEEEEeCC
Q psy258          119 KARINLHQSVFASSKINVYFVQP  141 (238)
Q Consensus       119 ~Ar~~L~~~~f~g~~lrIyFAq~  141 (238)
                      .|...+++..+.+..++|.++..
T Consensus        63 ~a~~~~~~~~l~~~~~~v~~~~~   85 (113)
T d1owxa_          63 GKAKDANNGNLQLRNKEVTWEVL   85 (113)
T ss_dssp             HHHHHTTTSCBCTTSSSEEEEEC
T ss_pred             HHHHHhcCCceecCceEEEEeec
Confidence            99999999888777777766543

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0017  Score=45.99  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=36.1

Q ss_pred             hcCCceEEEecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCcc
Q psy258           91 QFGKPKSFQYLKSFRRMRVNYESSAAAAKARINLHQSVFASSK  133 (238)
Q Consensus        91 ~~~~iv~fv~LkSF~RiiVVF~~~eaA~~Ar~~L~~~~f~g~~  133 (238)
                      .||+++++...++-+-++|-|.+.++|.+|.+ +++..|+|..
T Consensus        26 ~~G~I~~~~~~~~~~~~fV~f~~~~~A~~Al~-~nG~~~~g~~   67 (81)
T d1wwha1          26 QYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESI   67 (81)
T ss_dssp             TTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred             hhhhhheEEecCCCCEEEEEEcccHHHHHHHh-cCCCeECCcE
Confidence            55677888888888889999999999999985 8999998853

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0059  Score=47.11  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=46.7

Q ss_pred             CcEEEecCCCCCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEec------CCCCeEEEEeC
Q psy258           39 KSLIITNLNPDLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYL------KSFRRMRVNYE  112 (238)
Q Consensus        39 ~TLiitnL~~~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~L------kSF~RiiVVF~  112 (238)
                      .||||.|||..+-+     +.|+++|++||.                         +..+...      ++-|.++|.|.
T Consensus         7 r~lfV~nLp~~~te-----~~L~~~F~~~G~-------------------------v~~~~~~~~~~~~~~~g~afv~f~   56 (183)
T d1u1qa_           7 RKLFIGGLSFETTD-----ESLRSHFEQWGT-------------------------LTDCVVMRDPNTKRSRGFGFVTYA   56 (183)
T ss_dssp             HEEEEESCCTTCCH-----HHHHHHHGGGSC-------------------------EEEEEEEECTTTCCEEEEEEEEES
T ss_pred             CEEEEECCCCCCCH-----HHHHHHHHHcCC-------------------------EEEEEeeecccCCCccCceecccC
Confidence            49999999986544     356688886655                         4444433      33357899999


Q ss_pred             CHHHHHHHHHHhcCCccCCcceEEEE
Q psy258          113 SSAAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus       113 ~~eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      +.++|.+|+...++. +++..+.+..
T Consensus        57 ~~~~a~~a~~~~~~~-~~~~~~~~~~   81 (183)
T d1u1qa_          57 TVEEVDAAMNARPHK-VDGRVVEPKR   81 (183)
T ss_dssp             SHHHHHHHHHTCSCE-ETTEECEEEE
T ss_pred             CHHHHHHHHHhcCCc-ccccchhhhh
Confidence            999999998876554 4443444433

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.023  Score=41.85  Aligned_cols=70  Identities=11%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             cEEEecCC----C-CCCCChHHHHHHHHHHhhcCCCcchhhhhhhHHHHHHHHhhhhcCCceEEEecCCCCeEEEEeCCH
Q psy258           40 SLIITNLN----P-DLFKDDALKEQIETLLSQFGKPKSFQYLKNDALKEQIETLLSQFGKPKSFQYLKSFRRMRVNYESS  114 (238)
Q Consensus        40 TLiitnL~----~-~vf~~~~l~~~l~~lF~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~iv~fv~LkSF~RiiVVF~~~  114 (238)
                      |+.|+=.+    + ..|. +++..+|-.-|++||++.                       ++.|+-    ..+||+|.+-
T Consensus        17 TIvV~i~~~s~e~~~~FD-e~l~~~Llq~l~~~GeVi-----------------------LvRFv~----d~mwVTF~dG   68 (95)
T d1ufwa_          17 TVVVNLQSPTLEEKNEFP-EDLRTELMQTLGSYGTIV-----------------------LVRINQ----GQMLVTFADS   68 (95)
T ss_dssp             EEEEEESSCCHHHHHSCC-HHHHHHHHHHHHHHSCCS-----------------------EEEEET----TEEEEECSCS
T ss_pred             EEEEEeccCCccccccCC-HHHHHHHHHHHhhCCeEE-----------------------EEEEeC----CeEEEEECCc
Confidence            77776554    1 3666 899999999999887765                       334332    6899999999


Q ss_pred             HHHHHHHHHhcCCccCCcceEEEE
Q psy258          115 AAAAKARINLHQSVFASSKINVYF  138 (238)
Q Consensus       115 eaA~~Ar~~L~~~~f~g~~lrIyF  138 (238)
                      ++|.+|.. +++..+.|+.++|.-
T Consensus        69 ~SAL~al~-l~g~~v~G~~l~It~   91 (95)
T d1ufwa_          69 HSALSVLD-VDGMKVKGRAVKISG   91 (95)
T ss_dssp             HHHHHHHH-GGGSEETTEEEEEEC
T ss_pred             HHHHHHhc-cCCeEEcceEEEEec
Confidence            99998874 677778887777653

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.02  Score=40.25  Aligned_cols=50  Identities=28%  Similarity=0.303  Sum_probs=39.0

Q ss_pred             hcCCceEEEecC--CCC-eEEEEeCCHHHHHHHHHHhcCCccCCcceEEEEeC
Q psy258           91 QFGKPKSFQYLK--SFR-RMRVNYESSAAAAKARINLHQSVFASSKINVYFVQ  140 (238)
Q Consensus        91 ~~~~iv~fv~Lk--SF~-RiiVVF~~~eaA~~Ar~~L~~~~f~g~~lrIyFAq  140 (238)
                      .++.+.++...+  -+. -+.|..++.++|+.|...||+..+++++|.|.|+.
T Consensus        19 ~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~   71 (73)
T d2dgxa1          19 RHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT   71 (73)
T ss_dssp             HHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             hheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEec
Confidence            444555444433  332 58899999999999999999999999999999863