Psyllid ID: psy2608
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 321 | 2.2.26 [Sep-21-2011] | |||||||
| Q8NFA0 | 1604 | Ubiquitin carboxyl-termin | yes | N/A | 0.616 | 0.123 | 0.577 | 2e-68 | |
| P35125 | 1406 | Ubiquitin carboxyl-termin | no | N/A | 0.616 | 0.140 | 0.527 | 7e-59 | |
| Q13107 | 963 | Ubiquitin carboxyl-termin | no | N/A | 0.557 | 0.185 | 0.323 | 2e-26 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | no | N/A | 0.819 | 0.273 | 0.285 | 3e-26 | |
| Q5RCD3 | 963 | Ubiquitin carboxyl-termin | no | N/A | 0.557 | 0.185 | 0.323 | 7e-26 | |
| P35123 | 962 | Ubiquitin carboxyl-termin | no | N/A | 0.557 | 0.186 | 0.333 | 9e-26 | |
| A6QR55 | 963 | Ubiquitin carboxyl-termin | no | N/A | 0.557 | 0.185 | 0.318 | 7e-25 | |
| Q9R085 | 952 | Ubiquitin carboxyl-termin | no | N/A | 0.551 | 0.185 | 0.346 | 7e-23 | |
| Q9Y4E8 | 981 | Ubiquitin carboxyl-termin | no | N/A | 0.551 | 0.180 | 0.346 | 8e-23 | |
| Q2HJE4 | 952 | Ubiquitin carboxyl-termin | no | N/A | 0.551 | 0.185 | 0.346 | 8e-23 |
| >sp|Q8NFA0|UBP32_HUMAN Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens GN=USP32 PE=1 SV=1 | Back alignment and function desciption |
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Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/201 (57%), Positives = 151/201 (75%), Gaps = 3/201 (1%)
Query: 1 MLRQTAYFLSAHKYRPILFGIPVIVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPN 60
M+R YFLS+ K RP LFG+P+IVPC+ T ++DLY AVW+QV+RL +PLPP E S N
Sbjct: 1083 MMRTELYFLSSQKNRPSLFGMPLIVPCTVHTRKKDLYDAVWIQVSRLASPLPPQEAS--N 1140
Query: 61 HAMDCDDSLGYEYPFVLKAITPDGMQCSLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDW 120
HA DCDDS+GY+YPF L+ + DG C+ C W +FC GCK+ C + + + ++A+DW
Sbjct: 1141 HAQDCDDSMGYQYPFTLRVVQKDGNSCAWCPWYRFCRGCKIDCGE-DRAFIGNAYIAVDW 1199
Query: 121 DPTALHLRYQSSLEKVFEEHETCIASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKC 180
DPTALHLRYQ+S E+V +EHE+ S+R Q EPINL CL +FT EE LGENE YYC KC
Sbjct: 1200 DPTALHLRYQTSQERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEMYYCSKC 1259
Query: 181 KTHQLASKKLEIYRLPPVLIV 201
KTH LA+KKL+++RLPP+LI+
Sbjct: 1260 KTHCLATKKLDLWRLPPILII 1280
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Homo sapiens (taxid: 9606) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|P35125|UBP6_HUMAN Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens GN=USP6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 | Back alignment and function description |
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| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1 | Back alignment and function description |
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| >sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3 | Back alignment and function description |
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| >sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus GN=Usp15 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 321 | ||||||
| 328724654 | 1445 | PREDICTED: ubiquitin carboxyl-terminal h | 0.654 | 0.145 | 0.597 | 4e-74 | |
| 328724652 | 1554 | PREDICTED: ubiquitin carboxyl-terminal h | 0.654 | 0.135 | 0.597 | 6e-74 | |
| 427788383 | 1611 | Putative ubiquitin c-terminal hydrolase | 0.663 | 0.132 | 0.574 | 1e-73 | |
| 427793919 | 1519 | Putative ubiquitin c-terminal hydrolase, | 0.663 | 0.140 | 0.574 | 2e-73 | |
| 242013591 | 1585 | ubiquitin carboxyl-terminal hydrolase, p | 0.616 | 0.124 | 0.616 | 1e-72 | |
| 260820838 | 1785 | hypothetical protein BRAFLDRAFT_121867 [ | 0.619 | 0.111 | 0.63 | 1e-68 | |
| 291220896 | 1624 | PREDICTED: ubiquitin specific peptidase | 0.623 | 0.123 | 0.591 | 1e-67 | |
| 344285327 | 1617 | PREDICTED: ubiquitin carboxyl-terminal h | 0.616 | 0.122 | 0.582 | 3e-67 | |
| 301776002 | 1653 | PREDICTED: ubiquitin carboxyl-terminal h | 0.616 | 0.119 | 0.577 | 6e-67 | |
| 338710993 | 1605 | PREDICTED: ubiquitin carboxyl-terminal h | 0.616 | 0.123 | 0.582 | 6e-67 |
| >gi|328724654|ref|XP_003248213.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/221 (59%), Positives = 168/221 (76%), Gaps = 11/221 (4%)
Query: 1 MLRQTAYFLSAHKYRPILFGIPVIVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPN 60
M+RQ YF+SAHK +P +FG+P+I+PC+++TT QDLYQAVWLQVARLV+PLPP E++ PN
Sbjct: 1136 MIRQDVYFISAHKSKPSIFGLPIILPCNESTTNQDLYQAVWLQVARLVSPLPPSESTVPN 1195
Query: 61 HAMDCDDSLGYEYPFVLKAITPDGMQCSLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDW 120
HAMDCDDSLGYE+PFVLKA+ +G C+ C W +FC GC + C DT+FN+++ H+AIDW
Sbjct: 1196 HAMDCDDSLGYEFPFVLKAVNREGTLCAWCPWYRFCRGCTILCCDTDFNFAA-NHIAIDW 1254
Query: 121 DPTALHLRYQSSLEKVFEEHETCIASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKC 180
DPTALHLRYQ+S E EHE S+ TEPI+L CL +FTKEE L E EKYYC C
Sbjct: 1255 DPTALHLRYQTSQES---EHECIGESQCSHTEPISLESCLAAFTKEEQLSEAEKYYCSTC 1311
Query: 181 KTHQLASKKLEIYRLPPVLIV-------LRNTTVQSHRLTR 214
+ HQLASKKL+I+RLPP+LIV L V+SH++ +
Sbjct: 1312 QDHQLASKKLQIWRLPPILIVHLKRFQYLNGKWVKSHKVVK 1352
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Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328724652|ref|XP_003248212.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|427788383|gb|JAA59643.1| Putative ubiquitin c-terminal hydrolase [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
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| >gi|427793919|gb|JAA62411.1| Putative ubiquitin c-terminal hydrolase, partial [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
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| >gi|242013591|ref|XP_002427486.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus corporis] gi|212511881|gb|EEB14748.1| ubiquitin carboxyl-terminal hydrolase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|260820838|ref|XP_002605741.1| hypothetical protein BRAFLDRAFT_121867 [Branchiostoma floridae] gi|229291076|gb|EEN61751.1| hypothetical protein BRAFLDRAFT_121867 [Branchiostoma floridae] | Back alignment and taxonomy information |
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| >gi|291220896|ref|XP_002730462.1| PREDICTED: ubiquitin specific peptidase 15-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
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| >gi|344285327|ref|XP_003414413.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Loxodonta africana] | Back alignment and taxonomy information |
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| >gi|301776002|ref|XP_002923425.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Ailuropoda melanoleuca] | Back alignment and taxonomy information |
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| >gi|338710993|ref|XP_001503831.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 32 [Equus caballus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 321 | ||||||
| UNIPROTKB|F1N3S5 | 1542 | Bt.110642 "Ubiquitin carboxyl- | 0.616 | 0.128 | 0.577 | 9.5e-94 | |
| UNIPROTKB|F1PDR8 | 1633 | USP32 "Ubiquitin carboxyl-term | 0.616 | 0.121 | 0.577 | 1.2e-93 | |
| UNIPROTKB|K7EQL6 | 1274 | USP32 "Ubiquitin carboxyl-term | 0.616 | 0.155 | 0.577 | 1.4e-93 | |
| RGD|1306657 | 1431 | Usp32 "ubiquitin specific pept | 0.616 | 0.138 | 0.582 | 2.2e-93 | |
| UNIPROTKB|F1NZV6 | 1601 | USP32 "Ubiquitin carboxyl-term | 0.616 | 0.123 | 0.572 | 3.8e-93 | |
| UNIPROTKB|Q8NFA0 | 1604 | USP32 "Ubiquitin carboxyl-term | 0.616 | 0.123 | 0.577 | 4.9e-93 | |
| FB|FBgn0036913 | 1736 | CG8334 [Drosophila melanogaste | 0.317 | 0.058 | 0.543 | 1.2e-83 | |
| UNIPROTKB|P35125 | 1406 | USP6 "Ubiquitin carboxyl-termi | 0.616 | 0.140 | 0.527 | 3.5e-82 | |
| UNIPROTKB|F1S200 | 389 | LOC100737416 "Uncharacterized | 0.292 | 0.241 | 0.557 | 8.7e-51 | |
| WB|WBGene00000874 | 1178 | cyk-3 [Caenorhabditis elegans | 0.551 | 0.150 | 0.298 | 3.5e-29 |
| UNIPROTKB|F1N3S5 Bt.110642 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Score = 662 (238.1 bits), Expect = 9.5e-94, Sum P(2) = 9.5e-94
Identities = 116/201 (57%), Positives = 150/201 (74%)
Query: 1 MLRQTAYFLSAHKYRPILFGIPVIVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPN 60
M+R YFLS+ K RP LFG+P+IVPC+ T ++DLY AVW+QV+RL +PLPP E S N
Sbjct: 1021 MMRTELYFLSSQKNRPSLFGMPLIVPCTVHTRKKDLYDAVWIQVSRLASPLPPQEAS--N 1078
Query: 61 HAMDCDDSLGYEYPFVLKAITPDGMQCSLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDW 120
HA DCDDS+GY+YPF L+ + DG C+ C W +FC GCK+ C + + ++A+DW
Sbjct: 1079 HAQDCDDSMGYQYPFTLRVVQKDGNSCAWCPWYRFCRGCKIDCGEDRA-FIGNAYIAVDW 1137
Query: 121 DPTALHLRYQSSLEKVFEEHETCIASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKC 180
DPTALHLRYQ+S E+V +EHE+ S+R Q EPINL CL +FT EE LGENE YYC KC
Sbjct: 1138 DPTALHLRYQTSQERVVDEHESVEQSRRAQAEPINLDSCLRAFTSEEELGENEMYYCSKC 1197
Query: 181 KTHQLASKKLEIYRLPPVLIV 201
KTH LA+KKL+++RLPP+LI+
Sbjct: 1198 KTHCLATKKLDLWRLPPILII 1218
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| UNIPROTKB|F1PDR8 USP32 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|K7EQL6 USP32 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|1306657 Usp32 "ubiquitin specific peptidase 32" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NZV6 USP32 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8NFA0 USP32 "Ubiquitin carboxyl-terminal hydrolase 32" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| FB|FBgn0036913 CG8334 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P35125 USP6 "Ubiquitin carboxyl-terminal hydrolase 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S200 LOC100737416 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| WB|WBGene00000874 cyk-3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8NFA0 | UBP32_HUMAN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.5771 | 0.6168 | 0.1234 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.4.19.12 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 321 | |||
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 6e-35 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 3e-28 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 1e-25 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-24 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 1e-23 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 9e-23 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 2e-21 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 2e-18 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 5e-17 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 5e-14 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 1e-11 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 5e-10 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 3e-08 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 4e-07 | |
| cd02665 | 228 | cd02665, Peptidase_C19I, A subfamily of Peptidase | 1e-06 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-05 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 2e-05 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 3e-05 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 4e-05 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 6e-05 | |
| cd02666 | 343 | cd02666, Peptidase_C19J, A subfamily of Peptidase | 1e-04 |
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 6e-35
Identities = 60/159 (37%), Positives = 77/159 (48%), Gaps = 26/159 (16%)
Query: 144 IASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV-- 201
I S + L CL FTKEE L + + CPKCK + A+KKL I RLP VLI+
Sbjct: 74 IPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHL 133
Query: 202 --------------------LRNTTVQSHRLTRG-HDPFDLKYSLYAIVCHSGILGGGHY 240
L + + + TR PF KY LYA+V H G L GGHY
Sbjct: 134 KRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPF--KYDLYAVVNHYGSLNGGHY 191
Query: 241 VSYALNPN-GKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278
+Y N WY ++DS +VS + +S AY+LFYE
Sbjct: 192 TAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
|
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
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| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
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| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| KOG1870|consensus | 842 | 100.0 | ||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1865|consensus | 545 | 100.0 | ||
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 99.97 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 99.97 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 99.97 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 99.96 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 99.96 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 99.96 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 99.96 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 99.96 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 99.95 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 99.95 | |
| KOG1868|consensus | 653 | 99.95 | ||
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 99.95 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 99.95 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 99.94 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 99.94 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 99.93 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 99.93 | |
| KOG1866|consensus | 944 | 99.92 | ||
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 99.92 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.92 | |
| KOG4598|consensus | 1203 | 99.91 | ||
| KOG1873|consensus | 877 | 99.9 | ||
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 99.9 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 99.9 | |
| KOG1867|consensus | 492 | 99.88 | ||
| KOG1864|consensus | 587 | 99.85 | ||
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 99.83 | |
| KOG0944|consensus | 763 | 99.75 | ||
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 99.65 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 99.64 | |
| KOG1863|consensus | 1093 | 99.62 | ||
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.5 | |
| KOG1871|consensus | 420 | 99.39 | ||
| KOG1872|consensus | 473 | 99.29 | ||
| KOG1275|consensus | 1118 | 98.6 | ||
| KOG2026|consensus | 442 | 98.58 | ||
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 97.06 |
| >KOG1870|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=336.62 Aligned_cols=279 Identities=28% Similarity=0.443 Sum_probs=196.9
Q ss_pred ccceeeecccCCCceecccceEEecCC-C-CCHHHHHHHHHHHHhhhcCCCCCCC--CCCCCCCCCCCCCCCc------c
Q psy2608 3 RQTAYFLSAHKYRPILFGIPVIVPCSD-T-TTQQDLYQAVWLQVARLVTPLPPLE--TSPPNHAMDCDDSLGY------E 72 (321)
Q Consensus 3 ~~~~y~~s~~~~~~~lfG~Pl~~~~~~-~-~t~~~Ly~~v~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~------~ 72 (321)
+.+.++...+..+..+||.||+++++. . .|..+|+..+..+.+++..-.+... ........+..+..+. .
T Consensus 533 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~ 612 (842)
T KOG1870|consen 533 RLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSR 612 (842)
T ss_pred ccccccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccC
Confidence 444555556677889999999999987 3 5999999999999888876421110 0000111110000000 0
Q ss_pred cceEEE--EeCCCCCcccCCcccccccCccccCCCCcccCCCCcEEEEecCcchhhccccccceeeeecccccccccccc
Q psy2608 73 YPFVLK--AITPDGMQCSLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDWDPTALHLRYQSSLEKVFEEHETCIASKREQ 150 (321)
Q Consensus 73 ~pf~l~--~v~~~g~~c~~C~~~~~C~gC~~~~~~~~~~~~~~~~i~idW~~~~~~~~y~~~~~~~~~~~~s~~~~~~~~ 150 (321)
-|.... ..+..+..+..+....++..+......+.+...+...++.+|.|......+..........++.........
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (842)
T KOG1870|consen 613 DPSEDDNSDQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGS 692 (842)
T ss_pred CChhHhccccccchhhccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCC
Confidence 000000 111122233333333444444444444333333323489999998877777666555556666655544445
Q ss_pred CCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----cc---------cc---
Q psy2608 151 TEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----RL---------TR--- 214 (321)
Q Consensus 151 ~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----k~---------~~--- 214 (321)
..+++|++||+.|+++|.|+.+++|+|++|++++.|+|++.+|+||++||||||||.+.. |+ ..
T Consensus 693 ~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s 772 (842)
T KOG1870|consen 693 PAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLS 772 (842)
T ss_pred CCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcc
Confidence 568999999999999999999999999999999999999999999999999999997643 22 00
Q ss_pred --CCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcC
Q psy2608 215 --GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKD 281 (321)
Q Consensus 215 --~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~ 281 (321)
........|+|+||++|+|++++||||||+|+. +++||.|||++|+++++++|.+++||+|||+|++
T Consensus 773 ~~~~~~~~~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 773 EFVVNKEQVLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred hhhccCccceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 111223899999999999999999999999997 9999999999999999999999999999999975
|
|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865|consensus | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868|consensus | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866|consensus | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598|consensus | Back alignment and domain information |
|---|
| >KOG1873|consensus | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1867|consensus | Back alignment and domain information |
|---|
| >KOG1864|consensus | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG0944|consensus | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1863|consensus | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1871|consensus | Back alignment and domain information |
|---|
| >KOG1872|consensus | Back alignment and domain information |
|---|
| >KOG1275|consensus | Back alignment and domain information |
|---|
| >KOG2026|consensus | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 321 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 9e-21 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 6e-14 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 6e-14 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 7e-14 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 1e-13 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 2e-13 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 1e-12 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 1e-12 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 1e-12 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 2e-12 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 4e-12 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 5e-12 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 5e-12 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 3e-42
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 134 EKVFEEHETCIASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIY 193
+K + ++++ + L C+E FT E LGE++ +YCP CK HQ A+KK +++
Sbjct: 191 KKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLW 250
Query: 194 RLPPVLIVL----RNTTVQSHRLTR----------------GHDPFDLKYSLYAIVCHSG 233
LP +L+V +L Y L A+ H G
Sbjct: 251 SLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYG 310
Query: 234 ILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKDLD 283
+G GHY +YA N NGKWY ++DS+ S ++ T AY+LFY+R+D +
Sbjct: 311 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361
|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 99.98 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 99.98 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 99.97 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 99.97 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 99.96 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 99.95 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 99.95 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 99.92 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 98.72 |
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=275.80 Aligned_cols=133 Identities=39% Similarity=0.746 Sum_probs=116.3
Q ss_pred CCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc----ccc-----cc-------
Q psy2608 151 TEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS----HRL-----TR------- 214 (321)
Q Consensus 151 ~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~----~k~-----~~------- 214 (321)
...++|++||+.|+.+|.|+++|.|+|++|++++.|+|++.|++||+||+||||||.+. .|+ -+
T Consensus 208 ~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~ 287 (367)
T 2y6e_A 208 KTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMS 287 (367)
T ss_dssp --CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECG
T ss_pred CCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChh
Confidence 34689999999999999999999999999999999999999999999999999999763 233 01
Q ss_pred ----CCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcCCC
Q psy2608 215 ----GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKDLD 283 (321)
Q Consensus 215 ----~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~~~ 283 (321)
........|+|+|||+|.|++++|||+||+|+. +++||.|||+.|+++++++|.+.+||||||+|++..
T Consensus 288 ~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 288 EFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361 (367)
T ss_dssp GGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred hhccCCCCCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence 011235689999999999999999999999997 899999999999999999999999999999998843
|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 321 | ||||
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 7e-25 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 2e-24 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-16 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 4e-16 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 4e-14 |
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (248), Expect = 7e-25
Identities = 57/212 (26%), Positives = 86/212 (40%), Gaps = 22/212 (10%)
Query: 88 SLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDWDPTALHLRYQSSLEKVFEEHETCIASK 147
L K + + + + T Y S++ F + IA +
Sbjct: 126 HLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKR 185
Query: 148 REQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLR---- 203
+ L C+ FTKE+ L +EK C +C+ + KK I R P +L++
Sbjct: 186 GYP--EVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFS 243
Query: 204 ---------NTTVQSHRLTRGHDPF------DLKYSLYAIVCHSGILGGGHYVSYALNP- 247
T V F Y+LYA+ HSG GGHY +Y +P
Sbjct: 244 ESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPG 303
Query: 248 NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYER 279
G+W+ +NDSS +SS ++ TS AY+LFYE
Sbjct: 304 TGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 335
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 99.96 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 99.95 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 99.95 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 99.93 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 99.88 | |
| d1wmha_ | 83 | Protein kinase C, iota type {Human (Homo sapiens) | 80.31 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1e-29 Score=239.27 Aligned_cols=144 Identities=26% Similarity=0.398 Sum_probs=115.5
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------cc-------------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RL------------- 212 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~------------- 212 (321)
...++.+||+.++.+|.|++++.+.|..| +.+.|.|+..|+++|++|+|||+||.+.. |+
T Consensus 149 ~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~ 227 (347)
T d1nbfa_ 149 GKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD 227 (347)
T ss_dssp TCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECG
T ss_pred cccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccc
Confidence 44689999999999999999888877766 56889999999999999999999996421 22
Q ss_pred ---ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccC---------------CCcE
Q psy2608 213 ---TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDT---------------SCAY 273 (321)
Q Consensus 213 ---~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~---------------~~AY 273 (321)
..........|+|+|||+|.|..++|||+||+|+. +++||.|||+.|+++++++|.. .+||
T Consensus 228 ~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aY 307 (347)
T d1nbfa_ 228 EFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAY 307 (347)
T ss_dssp GGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEE
T ss_pred cccccccccCccceeeEEEEEecCCCCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEE
Confidence 01122335689999999999998999999999987 7899999999999999988852 4799
Q ss_pred EEEEEEcCCCCCCCCCCCCccccC
Q psy2608 274 MLFYERKDLDLGAYLPDVSEREMT 297 (321)
Q Consensus 274 iLfY~R~~~~~~~~~p~~~~~~~~ 297 (321)
||||+|++... ..+..+.+.++|
T Consensus 308 iLfY~r~~~~~-~~~~~~~~~~~~ 330 (347)
T d1nbfa_ 308 MLVYIRESKLS-EVLQAVTDHDIP 330 (347)
T ss_dssp EEEEEEGGGHH-HHTCCCCGGGSC
T ss_pred EEEEEecCchH-HhhCCCCccccC
Confidence 99999997433 234444444444
|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|