Psyllid ID: psy2632

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MSVFQTGPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFVNKNWGRKTFH
cccccccccEEEEcccccccccHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEEcccEEEEEEccccccccEEEccccccccHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccccEEEEEEccccccccEEEEEcccEEEEEEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccccEEEEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHcccEEEEEEccccEEEEEEEEEEcccccccccccc
ccEEEcccccEEEEcccccccHHHHHHHHHHHHHHcccEEEEcccccEccccccHHHHHHHHHHHHHHccEEEccccccccEEEEccccccEEEEEEEEEEEEHHHHHHHHHHHHccccccEEEEEEEEcEEccEcccHHHHHcHHHHHHHHccccEEEEEEEccccccccEEEEEEEccccccccEEEEccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccccccccEEEEEEEEcccEEEEccHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEEEccccccccccccc
msvfqtgpdvlnidgsvlegGGQILRMAMVFSGllhrpihvfniragrvkpglaaqHLNGLIVAKDICqgrlenahigsteiifypgnitsgnfyadsktagSVTLIMQVALPLLlfssgqsqlivkggtnadmappidyyihlwrpvfchffnfnidihdvrrgffpkgggevnvdvtpvqyirpieltqrgeltaVWGHAFVAggvkmntaqTMADTAYDYLVKsypdfktkLKITTYQLssdkaigngsGVYIFAATstgarysggcngsprtspgecglNAAKELWSSLCENICFDEHTQDQLIVMMALAKGtsrvrvgqISLHTRTAIHIAELMTSAKfniiehedksciiecqgmgfvnknwgrktfh
msvfqtgpdvlnIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQlssdkaignGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIEcqgmgfvnknwgrktfh
MSVFQTGPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFVNKNWGRKTFH
********DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYIFAATSTGARYSGGC*********ECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFVNKNWG*****
*************DGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLS****IGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFVNKNW*R****
MSVFQTGPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFVNKNWGRKTFH
*SVFQTGPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFVNKNWG***F*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSVFQTGPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFVNKNWGRKTFH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query374 2.2.26 [Sep-21-2011]
Q4R3J0366 RNA 3'-terminal phosphate N/A N/A 0.954 0.975 0.476 2e-88
O00442366 RNA 3'-terminal phosphate yes N/A 0.954 0.975 0.474 5e-88
Q2HJ88366 RNA 3'-terminal phosphate yes N/A 0.954 0.975 0.468 3e-87
Q9D7H3366 RNA 3'-terminal phosphate yes N/A 0.946 0.967 0.460 6e-87
Q5R7P3366 RNA 3'-terminal phosphate yes N/A 0.954 0.975 0.468 2e-85
O77264361 RNA 3'-terminal phosphate yes N/A 0.946 0.980 0.378 8e-64
B8D680357 RNA 3'-terminal phosphate yes N/A 0.930 0.974 0.392 9e-57
A3DN24357 RNA 3'-terminal phosphate yes N/A 0.930 0.974 0.340 4e-54
A8MAV7354 RNA 3'-terminal phosphate yes N/A 0.895 0.946 0.356 3e-53
A1RSJ7348 RNA 3'-terminal phosphate yes N/A 0.917 0.985 0.351 6e-53
>sp|Q4R3J0|RTCA_MACFA RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis GN=RTCA PE=2 SV=1 Back     alignment and function desciption
 Score =  326 bits (836), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 176/369 (47%), Positives = 237/369 (64%), Gaps = 12/369 (3%)

Query: 7   GPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKD 66
           GP V  +DGS++EGGGQILR++   S LL  P+ V  IRAGR  PGL  QHL+GL + +D
Sbjct: 3   GPRV-EVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRD 61

Query: 67  ICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIV 126
           +C GRLE A IGSTEI F P  I  G   AD+KTAGSV L+MQV++P +LF++  S+L +
Sbjct: 62  LCDGRLEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELHL 121

Query: 127 KGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIR 185
           KGGTNA+MAP IDY + +++P+   F F FN DI    RG++PKGGGEV V ++PV+ + 
Sbjct: 122 KGGTNAEMAPQIDYTVMVFKPIVEKFGFRFNCDIKT--RGYYPKGGGEVIVRMSPVKQLN 179

Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
           PI LT RG +T ++G AFVAG +    A+ MA  A   + K   D    + I   Q   D
Sbjct: 180 PINLTDRGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDL--YVNIQPVQEPKD 237

Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
           +A GNG+G+ I A TSTG  ++G   G    +  + G+ AA+ L ++L      DE+ QD
Sbjct: 238 QAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIEAAEMLLANLRHGGTVDEYLQD 297

Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDK------SCIIECQ 359
           QLIV MALA G SR++ G ++LHT+TAIH AE +  AKF + + ED+      + IIECQ
Sbjct: 298 QLIVFMALANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDASKDTYIIECQ 357

Query: 360 GMGFVNKNW 368
           G+G  N N 
Sbjct: 358 GIGMTNPNL 366
Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
Macaca fascicularis (taxid: 9541)
EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|O00442|RTCA_HUMAN RNA 3'-terminal phosphate cyclase OS=Homo sapiens GN=RTCA PE=1 SV=1 Back     alignment and function description
>sp|Q2HJ88|RTCA_BOVIN RNA 3'-terminal phosphate cyclase OS=Bos taurus GN=RTCA PE=2 SV=1 Back     alignment and function description
>sp|Q9D7H3|RTCA_MOUSE RNA 3'-terminal phosphate cyclase OS=Mus musculus GN=RtcA PE=2 SV=2 Back     alignment and function description
>sp|Q5R7P3|RTCA_PONAB RNA 3'-terminal phosphate cyclase OS=Pongo abelii GN=RTCA PE=2 SV=1 Back     alignment and function description
>sp|O77264|RTCA_DROME RNA 3'-terminal phosphate cyclase OS=Drosophila melanogaster GN=CG4061 PE=2 SV=1 Back     alignment and function description
>sp|B8D680|RTCA_DESK1 RNA 3'-terminal phosphate cyclase OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rtcA PE=3 SV=1 Back     alignment and function description
>sp|A3DN24|RTCA_STAMF RNA 3'-terminal phosphate cyclase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rtcA PE=3 SV=2 Back     alignment and function description
>sp|A8MAV7|RTCA_CALMQ RNA 3'-terminal phosphate cyclase OS=Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=rtcA PE=3 SV=1 Back     alignment and function description
>sp|A1RSJ7|RTCA_PYRIL RNA 3'-terminal phosphate cyclase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rtcA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
350276137365 RNA 3'-terminal phosphate cyclase [Xenop 0.951 0.975 0.469 3e-89
50751250365 PREDICTED: RNA 3'-terminal phosphate cyc 0.951 0.975 0.472 3e-89
224057321365 PREDICTED: RNA 3'-terminal phosphate cyc 0.951 0.975 0.469 1e-88
403283839366 PREDICTED: RNA 3'-terminal phosphate cyc 0.954 0.975 0.479 2e-87
327270632438 PREDICTED: LOW QUALITY PROTEIN: RNA 3'-t 0.951 0.812 0.467 2e-87
350276136365 RNA terminal phosphate cyclase domain 1 0.954 0.978 0.457 2e-87
343478269366 RNA 3'-terminal phosphate cyclase [Sus s 0.954 0.975 0.471 2e-87
296208633366 PREDICTED: RNA 3'-terminal phosphate cyc 0.954 0.975 0.476 4e-87
351699243366 RNA 3'-terminal phosphate cyclase [Heter 0.951 0.972 0.472 4e-87
109011486366 PREDICTED: RNA 3'-terminal phosphate cyc 0.954 0.975 0.476 5e-87
>gi|350276137|ref|NP_001086034.2| RNA 3'-terminal phosphate cyclase [Xenopus laevis] Back     alignment and taxonomy information
 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/362 (46%), Positives = 233/362 (64%), Gaps = 6/362 (1%)

Query: 9   DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDIC 68
           + ++IDGS++EGGGQILR+      LL + +HV  IRAGR  PGL  QHL+GL   +D+C
Sbjct: 6   ETVDIDGSIMEGGGQILRICAALGCLLGKRLHVHQIRAGRSTPGLRPQHLSGLQTVRDLC 65

Query: 69  QGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKG 128
            G+LE A IGSTEI F PG I  G   AD KTAGSV L++QV+LP +LF+   ++LI+KG
Sbjct: 66  GGKLEKAEIGSTEIEFAPGKIKGGTLTADPKTAGSVCLLLQVSLPCVLFAESPTELILKG 125

Query: 129 GTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIE 188
           GTNA+MAP IDY   +++P+  H F+F +D    RRG++P+GGGE+ V V+PV+++ PI 
Sbjct: 126 GTNAEMAPQIDYTTMVFKPIVEH-FSFKLDCDIKRRGYYPRGGGEILVKVSPVKHLNPIN 184

Query: 189 LTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI 248
           L  RG +T ++G AFVAG +    A+ MA  A   + +   D    + I   Q   D A+
Sbjct: 185 LVDRGSVTKIYGRAFVAGVLPYKMAKDMASAAVRCIRRELRDL--HVNIQAVQEPKDTAV 242

Query: 249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLI 308
            NGSG+ I A TSTG  ++G   G    +    G+ AA+ L  +L    C DE+ QDQLI
Sbjct: 243 ANGSGIIIVAETSTGCLFAGSALGKKGVTTDRVGMEAAEILLRNLRHGGCVDEYLQDQLI 302

Query: 309 VMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNI--IEHEDKSC-IIECQGMGFVN 365
           + MALA G S+++ G ++LHT+TAIH AE +T AKF +   E  +  C IIECQG+GF N
Sbjct: 303 IFMALADGISQIKTGPLTLHTQTAIHFAEQLTKAKFTVKKCEEANTDCNIIECQGIGFKN 362

Query: 366 KN 367
            N
Sbjct: 363 MN 364

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|50751250|ref|XP_422311.1| PREDICTED: RNA 3'-terminal phosphate cyclase [Gallus gallus] Back     alignment and taxonomy information
>gi|224057321|ref|XP_002188432.1| PREDICTED: RNA 3'-terminal phosphate cyclase [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|403283839|ref|XP_003933308.1| PREDICTED: RNA 3'-terminal phosphate cyclase isoform 1 [Saimiri boliviensis boliviensis] Back     alignment and taxonomy information
>gi|327270632|ref|XP_003220093.1| PREDICTED: LOW QUALITY PROTEIN: RNA 3'-terminal phosphate cyclase-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|350276136|ref|NP_001120256.2| RNA terminal phosphate cyclase domain 1 [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|343478269|ref|NP_001230399.1| RNA 3'-terminal phosphate cyclase [Sus scrofa] Back     alignment and taxonomy information
>gi|296208633|ref|XP_002751183.1| PREDICTED: RNA 3'-terminal phosphate cyclase isoform 2 [Callithrix jacchus] Back     alignment and taxonomy information
>gi|351699243|gb|EHB02162.1| RNA 3'-terminal phosphate cyclase [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|109011486|ref|XP_001107617.1| PREDICTED: RNA 3'-terminal phosphate cyclase isoform 3 [Macaca mulatta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
UNIPROTKB|E1C1Y0365 RTCD1 "Uncharacterized protein 0.949 0.972 0.482 5e-83
UNIPROTKB|O00442366 RTCA "RNA 3'-terminal phosphat 0.951 0.972 0.475 1.4e-80
ZFIN|ZDB-GENE-030131-9687363 rtca "RNA 3'-terminal phosphat 0.930 0.958 0.472 4.7e-80
UNIPROTKB|E2RQG6540 RTCA "Uncharacterized protein" 0.938 0.65 0.469 6e-80
UNIPROTKB|Q2HJ88366 RTCA "RNA 3'-terminal phosphat 0.951 0.972 0.470 9.7e-80
RGD|1303111366 Rtcd1 "RNA terminal phosphate 0.938 0.959 0.475 1.6e-79
MGI|MGI:1913618366 Rtca "RNA 3'-terminal phosphat 0.938 0.959 0.464 4.2e-79
UNIPROTKB|F1S564365 RTCA "Uncharacterized protein" 0.946 0.969 0.436 2.6e-70
FB|FBgn0025630361 CG4061 [Drosophila melanogaste 0.946 0.980 0.378 5e-60
DICTYBASE|DDB_G0276159433 rtc1 "RNA 3'-terminal phosphat 0.935 0.808 0.355 1e-52
UNIPROTKB|E1C1Y0 RTCD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 176/365 (48%), Positives = 237/365 (64%)

Query:     9 DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDIC 68
             D + IDG ++EGGGQILR++   S LL  P+ V  IRAGR +PGL  QHL+GL + +D+C
Sbjct:     4 DRVEIDGGIMEGGGQILRVSTALSCLLGLPLRVRRIRAGRSQPGLRPQHLSGLEIVRDLC 63

Query:    69 QGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKG 128
             +G LE   IGSTEI F PG I  G   AD+KTAGSV L+MQVA+P +LF++  S+L  KG
Sbjct:    64 EGNLEGGEIGSTEITFTPGKIKGGTHIADTKTAGSVCLLMQVAMPCVLFAASPSELHFKG 123

Query:   129 GTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPI 187
             GTNA+MAP IDY + +++P+   F F FN DI   +RG++P+GGGEV V ++PV+ + PI
Sbjct:   124 GTNAEMAPQIDYTVMVFKPIVEKFNFTFNCDIK--KRGYYPQGGGEVIVRMSPVKELSPI 181

Query:   188 ELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKA 247
             +LT+RG +T ++G AFVAG + +  A+ M+  A   + K   D    + I T +   D+A
Sbjct:   182 DLTERGAVTKIYGRAFVAGALPIKLAKDMSAAAVRCIRKEIRDLY--INIQTVREPDDQA 239

Query:   248 IGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQL 307
              G GSG+ I A TSTG   +G   G    +    G+ AA+ L  +L      D+  QDQL
Sbjct:   240 FGTGSGIIIVAETSTGCLLAGSSLGRRGKNSDRVGIEAAEILLKNLKHGGAVDDSLQDQL 299

Query:   308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNII--EHEDKS---CIIECQGMG 362
             I+ MALAKG SRV+ G ++LHT+TAIH AE +T AKF +   E ED S    IIECQGMG
Sbjct:   300 IIFMALAKGVSRVKSGPVTLHTQTAIHFAEQLTKAKFTVTKSEEEDPSKDTYIIECQGMG 359

Query:   363 FVNKN 367
              +N N
Sbjct:   360 MINSN 364
GO:0003963 "RNA-3'-phosphate cyclase activity" evidence=IEA
GO:0006396 "RNA processing" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
UNIPROTKB|O00442 RTCA "RNA 3'-terminal phosphate cyclase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9687 rtca "RNA 3'-terminal phosphate cyclase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQG6 RTCA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ88 RTCA "RNA 3'-terminal phosphate cyclase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1303111 Rtcd1 "RNA terminal phosphate cyclase domain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913618 Rtca "RNA 3'-terminal phosphate cyclase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S564 RTCA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0025630 CG4061 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276159 rtc1 "RNA 3'-terminal phosphate cyclase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A3MXQ7RTCA_PYRCJ6, ., 5, ., 1, ., 40.35770.91440.9855yesN/A
A1AGU3RTCA_ECOK16, ., 5, ., 1, ., 40.31770.85820.9497yesN/A
Q8FCS8RTCA_ECOL66, ., 5, ., 1, ., 40.30900.85820.9497yesN/A
O00442RTCA_HUMAN6, ., 5, ., 1, ., 40.47420.95450.9754yesN/A
B5YTX2RTCA_ECO5E6, ., 5, ., 1, ., 40.30900.85820.9385yesN/A
O28837RTCA_ARCFU6, ., 5, ., 1, ., 40.34550.82350.9390yesN/A
Q2HJ88RTCA_BOVIN6, ., 5, ., 1, ., 40.46880.95450.9754yesN/A
Q9V0Z6RTCA_PYRAB6, ., 5, ., 1, ., 40.32150.86360.9444yesN/A
A8A5M8RTCA_ECOHS6, ., 5, ., 1, ., 40.31480.85820.9497yesN/A
B1L6E9RTCA_KORCO6, ., 5, ., 1, ., 40.30610.91970.9885yesN/A
Q8TZC9RTCA_METKA6, ., 5, ., 1, ., 40.32490.92510.9829yesN/A
Q9D7H3RTCA_MOUSE6, ., 5, ., 1, ., 40.46020.94650.9672yesN/A
B6YSJ5RTCA_THEON6, ., 5, ., 1, ., 40.33040.83680.9205yesN/A
Q9YES0RTCA_AERPE6, ., 5, ., 1, ., 40.33610.91440.9473yesN/A
B2U3M8RTCA_SHIB36, ., 5, ., 1, ., 40.31480.85820.9497yesN/A
Q8ZST4RTCA_PYRAE6, ., 5, ., 1, ., 40.35110.91170.9798yesN/A
B1IP46RTCA_ECOLC6, ., 5, ., 1, ., 40.31480.85820.9497yesN/A
Q5R7P3RTCA_PONAB6, ., 5, ., 1, ., 40.46880.95450.9754yesN/A
Q8U0N7RTCA_PYRFU6, ., 5, ., 1, ., 40.31040.88500.9678yesN/A
C4ZVX1RTCA_ECOBW6, ., 5, ., 1, ., 40.31770.85820.9497yesN/A
Q60335RTCA_METJA6, ., 5, ., 1, ., 40.31210.87960.9733yesN/A
B1YDJ1RTCA_PYRNV6, ., 5, ., 1, ., 40.33790.90640.9769yesN/A
B1LI80RTCA_ECOSM6, ., 5, ., 1, ., 40.31300.86360.9556yesN/A
Q2Y720RTCA_NITMU6, ., 5, ., 1, ., 40.32150.87960.9320yesN/A
B7L4U9RTCA_ECO556, ., 5, ., 1, ., 40.31770.85820.9497yesN/A
O27937RTCA_METTH6, ., 5, ., 1, ., 40.32080.89030.9881yesN/A
O77264RTCA_DROME6, ., 5, ., 1, ., 40.37810.94650.9806yesN/A
A2BN21RTCA_HYPBU6, ., 5, ., 1, ., 40.34700.88500.9220yesN/A
Q32AN4RTCA_SHIDS6, ., 5, ., 1, ., 40.31480.85820.9385yesN/A
B7N1J7RTCA_ECO816, ., 5, ., 1, ., 40.31480.85820.9497yesN/A
A3DN24RTCA_STAMF6, ., 5, ., 1, ., 40.34070.93040.9747yesN/A
B8D680RTCA_DESK16, ., 5, ., 1, ., 40.39270.93040.9747yesN/A
O59198RTCA_PYRHO6, ., 5, ., 1, ., 40.31850.86360.9472yesN/A
B7M2I0RTCA_ECO8A6, ., 5, ., 1, ., 40.31770.85820.9497yesN/A
Q0TC48RTCA_ECOL56, ., 5, ., 1, ., 40.31480.85820.9497yesN/A
B1X765RTCA_ECODH6, ., 5, ., 1, ., 40.31770.85820.9497yesN/A
O15746RTCA_DICDI6, ., 5, ., 1, ., 40.35230.93310.8060yesN/A
A0B532RTCA_METTP6, ., 5, ., 1, ., 40.34980.85560.9638yesN/A
B7UKC4RTCA_ECO276, ., 5, ., 1, ., 40.31590.86360.9556yesN/A
B7NMI4RTCA_ECO7I6, ., 5, ., 1, ., 40.31010.86360.9556yesN/A
B7MDP5RTCA_ECO456, ., 5, ., 1, ., 40.31770.85820.9497yesN/A
A7ZSU9RTCA_ECO246, ., 5, ., 1, ., 40.31770.85820.9497yesN/A
A8A9W2RTCA_IGNH46, ., 5, ., 1, ., 40.30980.92510.9801yesN/A
A1RSJ7RTCA_PYRIL6, ., 5, ., 1, ., 40.35110.91710.9856yesN/A
Q1R5L5RTCA_ECOUT6, ., 5, ., 1, ., 40.31770.85820.9497yesN/A
Q31VL3RTCA_SHIBS6, ., 5, ., 1, ., 40.31480.85820.9497yesN/A
A8MAV7RTCA_CALMQ6, ., 5, ., 1, ., 40.35630.89570.9463yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.5.10.921
4th Layer6.5.1.40.914

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
TIGR03399326 TIGR03399, RNA_3prim_cycl, RNA 3'-phosphate cyclas 1e-107
cd00874326 cd00874, RNA_Cyclase_Class_II, RNA 3' phosphate cy 1e-105
pfam01137330 pfam01137, RTC, RNA 3'-terminal phosphate cyclase 2e-97
PRK04204343 PRK04204, PRK04204, RNA 3'-terminal-phosphate cycl 2e-95
COG0430341 COG0430, RCL1, RNA 3'-terminal phosphate cyclase [ 2e-85
cd00295338 cd00295, RNA_Cyclase, RNA 3' phosphate cyclase dom 1e-42
TIGR03400360 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis prot 6e-39
cd01553211 cd01553, EPT_RTPC-like, This domain family include 1e-22
cd00875341 cd00875, RNA_Cyclase_Class_I, RNA 3' phosphate cyc 5e-22
pfam05189101 pfam05189, RTC_insert, RNA 3'-terminal phosphate c 3e-11
>gnl|CDD|234197 TIGR03399, RNA_3prim_cycl, RNA 3'-phosphate cyclase Back     alignment and domain information 
 Score =  318 bits (817), Expect = e-107
 Identities = 136/333 (40%), Positives = 196/333 (58%), Gaps = 11/333 (3%)

Query: 13  IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRL 72
           IDGS  EGGGQILR A+  S L  +P+ ++NIRA R KPGLA QHL  +  A +IC   +
Sbjct: 3   IDGSYGEGGGQILRTALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEV 62

Query: 73  ENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNA 132
           E A +GSTE+ F PG I  G++  D  TAGSVTL++Q  LP LLF++G S++ V GGT+ 
Sbjct: 63  EGAELGSTELEFIPGKIRGGDYRFDIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDV 122

Query: 133 DMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQ 191
             APP+DY  +++ P+         +++  +RRGF+P+GGGEV + V PV+ ++P+EL +
Sbjct: 123 PWAPPVDYLRNVFLPLLERMGIRAELEL--LRRGFYPRGGGEVRLRVEPVKKLKPLELEE 180

Query: 192 RGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNG 251
           RGEL  V G A  A  +  + A+ MA  A + L K   D + ++++       DK +G G
Sbjct: 181 RGELLRVSGIAHAA-NLPAHVAERMAKAAREELRKLGLDPEIEIEVL------DKGLGPG 233

Query: 252 SGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMM 311
           SG+ ++A T    R      G    S  + G  AA++L + L      DEH  DQLI+ M
Sbjct: 234 SGIVLWAET-EHCRLGFSALGEKGKSAEKVGEEAAEQLLAELRSGAAVDEHLADQLILYM 292

Query: 312 ALAKGTSRVRVGQISLHTRTAIHIAELMTSAKF 344
           ALA G SR    ++++H RT I + E     +F
Sbjct: 293 ALASGESRFTTSELTMHLRTNIWVIEQFLPVRF 325

Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification [Transcription, RNA processing]. Length = 326
>gnl|CDD|238446 cd00874, RNA_Cyclase_Class_II, RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>gnl|CDD|216322 pfam01137, RTC, RNA 3'-terminal phosphate cyclase Back     alignment and domain information
>gnl|CDD|235255 PRK04204, PRK04204, RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>gnl|CDD|223507 COG0430, RCL1, RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|238183 cd00295, RNA_Cyclase, RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>gnl|CDD|234198 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>gnl|CDD|238447 cd00875, RNA_Cyclase_Class_I, RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information
>gnl|CDD|203195 pfam05189, RTC_insert, RNA 3'-terminal phosphate cyclase (RTC), insert domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
TIGR03399326 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o 100.0
PRK04204343 RNA 3'-terminal-phosphate cyclase; Provisional 100.0
TIGR03400360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 100.0
cd00874326 RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma 100.0
COG0430341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 100.0
KOG3980|consensus361 100.0
cd00295338 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA 100.0
cd00875341 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai 100.0
PF01137228 RTC: RNA 3'-terminal phosphate cyclase; InterPro: 100.0
cd01553211 EPT_RTPC-like This domain family includes the Enol 100.0
PF05189103 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC 99.89
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-107  Score=794.56  Aligned_cols=325  Identities=42%  Similarity=0.710  Sum_probs=317.5

Q ss_pred             EEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCccc
Q psy2632          11 LNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNIT   90 (374)
Q Consensus        11 i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~   90 (374)
                      |+||||+||||||+||+|+|||+||||||+|+|||++|+||||++||+++|++++++|||+++|++++||+|+|.||.++
T Consensus         1 i~iDGs~~eGGGQilR~alaLS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~   80 (326)
T TIGR03399         1 IEIDGSYGEGGGQILRTALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGKIR   80 (326)
T ss_pred             CEecCCCccCcHHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCCC
Q psy2632          91 SGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPK  169 (374)
Q Consensus        91 ~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P~  169 (374)
                      +|+|++||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| ++++++|  .||||||+
T Consensus        81 gG~~~~d~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v--~rRG~yP~  158 (326)
T TIGR03399        81 GGDYRFDIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELEL--LRRGFYPR  158 (326)
T ss_pred             CCeEEEeCCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEE--EeCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999 9999999  99999999


Q ss_pred             CCcEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCcC
Q psy2632         170 GGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIG  249 (374)
Q Consensus       170 GgGeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~~  249 (374)
                      |||||.++++|+++++|++|+++|++++|||++++++ +|+++++||+++|++.|++.+++++  ++++..    +.+.+
T Consensus       159 GGGeV~~~i~p~~~l~~i~l~~~G~i~~i~g~~~~~~-l~~~va~r~~~~a~~~L~~~~~~~~--i~~~~~----~~~~s  231 (326)
T TIGR03399       159 GGGEVRLRVEPVKKLKPLELEERGELLRVSGIAHAAN-LPAHVAERMAKAAREELRKLGLDPE--IEIEVL----DKGLG  231 (326)
T ss_pred             CCEEEEEEEccccCCCceeeecCCceEEEEEEEEEcc-CCHHHHHHHHHHHHHHHHhhCCCce--EEEEec----cCCCC
Confidence            9999999999999999999999999999999999987 9999999999999999999999888  887765    35679


Q ss_pred             CceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCCChhH
Q psy2632         250 NGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHT  329 (374)
Q Consensus       250 ~G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~t~ht  329 (374)
                      ||++++|||||+ ||++|++++|+++++||+||++||++|++|+++|||||+||||||++|||||+|+|+++++++|+|+
T Consensus       232 ~G~~i~L~aet~-g~~~~~~~lg~~g~~aE~vg~~aa~~L~~~i~~g~~vD~~lqdqlll~mALa~g~S~i~~~~lT~h~  310 (326)
T TIGR03399       232 PGSGIVLWAETE-HCRLGFSALGEKGKSAEKVGEEAAEQLLAELRSGAAVDEHLADQLILYMALASGESRFTTSELTMHL  310 (326)
T ss_pred             CcEEEEEEEEEC-CeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCCceEEecCCCHHH
Confidence            999999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCceEE
Q psy2632         330 RTAIHIAELMTSAKFN  345 (374)
Q Consensus       330 ~t~i~v~~~~~gv~f~  345 (374)
                      +|++|++++|++++|+
T Consensus       311 ~t~l~v~~~f~~v~f~  326 (326)
T TIGR03399       311 RTNIWVIEQFLPVRFE  326 (326)
T ss_pred             HHHHHHHHHHhCCeeC
Confidence            9999999999999985

Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>KOG3980|consensus Back     alignment and domain information
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
3kgd_A358 Crystal Structure Of E. Coli Rna 3' Cyclase Length 4e-42
1qmh_A347 Crystal Structure Of Rna 3'-Terminal Phosphate Cycl 4e-42
1qmi_A347 Crystal Structure Of Rna 3'-Terminal Phosphate Cycl 3e-41
3tut_A358 Crystal Structure Of Rtca.Atp Binary Complex Length 4e-41
3pqv_A365 Cyclase Homolog Length = 365 2e-09
>pdb|3KGD|A Chain A, Crystal Structure Of E. Coli Rna 3' Cyclase Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10  VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
           ++ +DG+  EGGGQILR A+  S +  +P  + +IRAGR KPGL  QHL  +  A +IC 
Sbjct: 24  MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG 83
Query: 70  GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
             +E A +GS  ++F PG +  G++     +AGS TL++Q  LP L F+ G S++ V GG
Sbjct: 84  ATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 143
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
           T+   APP D+   +  P+        I IH     +R GF+P GGG V  +V+PV    
Sbjct: 144 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 198
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
            ++L +RG +  + G   +AG       + +A+     L  S+   +  +    + L  D
Sbjct: 199 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 249
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
           +  GN   + + +   T   +     G  R S         KE+   L       E+  D
Sbjct: 250 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLAD 306
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
           QL++ MALA G     V   S H  T I + E     +F++IE
Sbjct: 307 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFSLIE 348
>pdb|1QMH|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An Ubiquitous Enzyme With Unusual Topology Length = 347 Back     alignment and structure
>pdb|1QMI|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An Ubiquitous Enzyme With Unusual Topology Length = 347 Back     alignment and structure
>pdb|3TUT|A Chain A, Crystal Structure Of Rtca.Atp Binary Complex Length = 358 Back     alignment and structure
>pdb|3PQV|A Chain A, Cyclase Homolog Length = 365 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
3pqv_A365 RCL1 protein; RTC-like, cyclase-like, modular, alp 1e-100
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 4e-98
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Length = 365 Back     alignment and structure
 Score =  299 bits (766), Expect = e-100
 Identities = 73/355 (20%), Positives = 137/355 (38%), Gaps = 12/355 (3%)

Query: 21  GGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGST 80
           G +  R+ +V + L  + I +  IR+  + PGL    ++ L + + +  G         T
Sbjct: 13  GSRNFRLRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGT 72

Query: 81  EIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDY 140
            +IF PG IT G++      +  V    +  L L  FS  +  ++ +G T++     ID 
Sbjct: 73  TVIFRPGIITGGSYTHQCPNSKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDA 132

Query: 141 YIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQY-IRPIELTQRGELTAVW 199
                 P+   F      +H ++RG  P GGGEV++ V  +      +    +  ++++ 
Sbjct: 133 IKWGLMPIMEKFGVRECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHALDKTMISSIR 192

Query: 200 GHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITT-YQLSSDKAIGNGSGVYIFA 258
           G ++    V  +    M D A   L  +  +    + IT       +     G G+ + A
Sbjct: 193 GVSYST-RVSPSLVNRMIDGAKKVLKSASCE----VNITADVWRGENSGKSPGWGLTLVA 247

Query: 259 ATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAK--- 315
               G R      G     P + G + A  L   + ++     +     I+ M + K   
Sbjct: 248 ENKQGWRIFSEAIGDAGDVPEDIGASVAYHLLEEISKSGVVGRNQLPLTILYMIIGKEDI 307

Query: 316 GTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKS--CIIECQGMGFVNKNW 368
           G  R+   QI       +   + +   +  +   +D +   I   +G+GF N N 
Sbjct: 308 GRLRITKDQIDERFVWLLRDIKKVFGTEILLKPVDDNTTDLIATIKGIGFTNTNK 362
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Length = 358 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 100.0
3pqv_A365 RCL1 protein; RTC-like, cyclase-like, modular, alp 100.0
2pqc_A445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 85.48
3rmt_A455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 85.45
2o0b_A450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 81.93
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure
Probab=100.00  E-value=3.4e-105  Score=784.77  Aligned_cols=336  Identities=31%  Similarity=0.511  Sum_probs=318.1

Q ss_pred             CCceEEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeC
Q psy2632           7 GPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYP   86 (374)
Q Consensus         7 ~~~~i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P   86 (374)
                      +.+||+||||+||||||+||+|++||+||||||+|+|||++|+||||++||+++|++++++|+|++++++.|||+|+|.|
T Consensus        21 ~~~~i~iDGs~~EGGGQ~lR~alaLS~Ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~~GSt~l~f~P  100 (358)
T 3tut_A           21 MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRP  100 (358)
T ss_dssp             --CCEEEETTSTTCSTHHHHHHHHHHHHHCCCEEEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCSCEEEEC
T ss_pred             cCccEEEeCCcccCchHHHHHHHHHHHhhCCCEEEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEeecCcEEEEEEC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecC
Q psy2632          87 GNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRG  165 (374)
Q Consensus        87 G~i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krG  165 (374)
                      |.+++|+|++||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| ++++++|  .|||
T Consensus       101 G~i~gg~~~~d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~~~l~i--~rRG  178 (358)
T 3tut_A          101 GTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTL--LRHG  178 (358)
T ss_dssp             CCCCCCEEEEECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCCEEEEE--EECC
T ss_pred             CCccCceEEEECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCcEEEEE--Eecc
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999999  9999


Q ss_pred             CCCCCCcEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCC
Q psy2632         166 FFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD  245 (374)
Q Consensus       166 f~P~GgGeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~  245 (374)
                      |||+|||||.++|+|+++|+|++|+++|+|++|||++++++ +|+++++||+++|++    .+++.+  ++++.++    
T Consensus       179 ~~P~GGGeV~~~v~pv~~l~~i~l~~~G~i~rIrG~a~~~~-v~~~va~R~~~~ar~----~~~~~~--~~~~~~~----  247 (358)
T 3tut_A          179 FYPAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAG-VPRHVAEREIATLAG----SFSLHE--QNIHNLP----  247 (358)
T ss_dssp             CTTTCCEEEEEEECCCSCCCCCBCCBCCCEEEEEEEEEEES-SCHHHHHHHHHHHBT----TBCEEE--EEEEEEC----
T ss_pred             ccCCCCeEEEEEEecCCCcccceeecCCCceEEEEEEEEcC-CChHHHHHHHHHHHh----cCCcce--eeeeecc----
Confidence            99999999999999999999999999999999999999998 999999999999987    345555  6676663    


Q ss_pred             CCcCCceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCC
Q psy2632         246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQI  325 (374)
Q Consensus       246 ~~~~~G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~  325 (374)
                      ++.+||++++||||++++| .+++++|++|++||+||++||++|+++|++|||||+|+||||++|||||+ .|+++++++
T Consensus       248 ~~~spG~gi~L~ae~~~~~-~~~~alG~~G~~aE~VG~~aA~~Ll~~l~~gg~VD~~l~Dqlil~mALa~-~s~i~~~~l  325 (358)
T 3tut_A          248 RDQGPGNTVSLEVESENIT-ERFFVVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMALAG-AGEFTVAHP  325 (358)
T ss_dssp             GGGCSEEEEEEEEEESSCE-EEEEEECCTTCCHHHHHHHHHHHHHHHHTSCBSBCHHHHHHHHHHHHHHT-CCEEEESSC
T ss_pred             CCCCCCeEEEEEEEEeeee-EEEEeeCCCCCCHHHHHHHHHHHHHHHHHcCCccchhhHHHHHHHHHhCC-CCeEEEcCC
Confidence            3579999999999999985 57888999999999999999999999999999999999999999999995 588999999


Q ss_pred             ChhHHHHHHHHHHhcCceEEEEecCCCeEEEEE
Q psy2632         326 SLHTRTAIHIAELMTSAKFNIIEHEDKSCIIEC  358 (374)
Q Consensus       326 t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c  358 (374)
                      |+|++|++|++|+|++++|+|++.++ .+.|++
T Consensus       326 T~Ht~T~i~vie~fl~v~f~i~~~~~-~~~v~~  357 (358)
T 3tut_A          326 SSNLLTNIAVVERFLPVRFSLIETDG-VTRVSI  357 (358)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEETT-EEEEEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEEEecCC-ceEEEe
Confidence            99999999999999999999999755 666665
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Back     alignment and structure
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 374
d1qmha2239 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosp 6e-71
d1qmha2239 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosp 4e-06
d1qmha195 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyc 2e-07
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Length = 239 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: RNA 3'-terminal phosphate cyclase, RPTC
domain: RNA 3'-terminal phosphate cyclase, RPTC
species: Escherichia coli [TaxId: 562]

 Score =  219 bits (560), Expect = 6e-71
 Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 3/212 (1%)

Query: 11  LNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQG 70
           + +DG+  EGGGQILR A+  S +  +P  + +IRAGR KPGL  QHL  +  A +IC  
Sbjct: 2   IALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGA 61

Query: 71  RLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGT 130
            +E A +GS  ++F PG +  G++     +AGS TL++Q  LP L F+ G S++ V GGT
Sbjct: 62  TVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGT 121

Query: 131 NADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELT 190
           +   APP D+   +  P+       +     +R GF+P GGG V  +V+PV     ++L 
Sbjct: 122 DNPSAPPADFIRRVLEPLL-AKIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFNTLQLG 180

Query: 191 QRGELTAVWG--HAFVAGGVKMNTAQTMADTA 220
             GE  A        +AG  +   A       
Sbjct: 181 AVGEYLADQLVLPMALAGAGEFTVAHPSCHLL 212
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Length = 239 Back     information, alignment and structure
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase, RPTC, insert domain {Escherichia coli [TaxId: 562]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 100.0
d1qmha195 RNA 3'-terminal phosphate cyclase, RPTC, insert do 99.79
d1p88a_216 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 90.31
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: RNA 3'-terminal phosphate cyclase, RPTC
domain: RNA 3'-terminal phosphate cyclase, RPTC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-76  Score=551.07  Aligned_cols=236  Identities=37%  Similarity=0.669  Sum_probs=226.0

Q ss_pred             eEEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcc
Q psy2632          10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNI   89 (374)
Q Consensus        10 ~i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i   89 (374)
                      ||+||||+||||||+||+|+|||+||||||+|+|||++|+||||++||+++|++++++|||+++|++++||+|+|+||.+
T Consensus         1 mi~iDGs~~EGGgqilR~~laLS~ltgkpv~I~nIR~~r~~PGL~~qh~~~l~l~~~i~~~~~~g~~~gst~l~f~Pg~i   80 (239)
T d1qmha2           1 MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRPGTV   80 (239)
T ss_dssp             CEEEETTSTTCSHHHHHHHHHHHHHHCCCEEEESTTTTBSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCCCEEEECCCC
T ss_pred             CeEEeCCCCcCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHhCCeEeeeecCcEEEEEECCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCC
Q psy2632          90 TSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFP  168 (374)
Q Consensus        90 ~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P  168 (374)
                      ++|+|+|||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| +++++++  .||||||
T Consensus        81 ~~g~~~~~~~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lp~l~~~G~~~~~~i--~~rG~~P  158 (239)
T d1qmha2          81 RGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTL--LRHGFYP  158 (239)
T ss_dssp             CCEEEEEEEEEEEEHHHHHHHHHHHHTTSSSCEEEEEEEECBBTTBCCTHHHHHTHHHHHHHTTCEEEEEE--EECCBTT
T ss_pred             cCCeEEEecCCCcchhHHHHHHHHHHhhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCCeEEEE--EecccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999  9999999


Q ss_pred             CCCcEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCc
Q psy2632         169 KGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI  248 (374)
Q Consensus       169 ~GgGeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~  248 (374)
                      +|||||.++|+|+++++|++|.                                                          
T Consensus       159 ~GGG~v~~~~~p~~~l~~i~l~----------------------------------------------------------  180 (239)
T d1qmha2         159 AGGGVVATEVSPVASFNTLQLG----------------------------------------------------------  180 (239)
T ss_dssp             CCCEEEEEEEECCSCCCCCBCC----------------------------------------------------------
T ss_pred             CCCeEEEEEEeccccccceeec----------------------------------------------------------
Confidence            9999999999999988888763                                                          


Q ss_pred             CCceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCCChh
Q psy2632         249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLH  328 (374)
Q Consensus       249 ~~G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~t~h  328 (374)
                                                                       .++++++||+++|||+| +.+.+++.+.+.|
T Consensus       181 -------------------------------------------------~~G~~~adq~i~~~alA-g~~~~svae~~~h  210 (239)
T d1qmha2         181 -------------------------------------------------AVGEYLADQLVLPMALA-GAGEFTVAHPSCH  210 (239)
T ss_dssp             -------------------------------------------------SSCHHHHHHHHHHHHHH-TCCEEEESSCCHH
T ss_pred             -------------------------------------------------cCCceeeeeeeeeehee-ccCCchHhhhhhh
Confidence                                                             34579999999999999 7788999999999


Q ss_pred             HHHHHHHHHHhcCceEEEEecCCCeEEE
Q psy2632         329 TRTAIHIAELMTSAKFNIIEHEDKSCII  356 (374)
Q Consensus       329 t~t~i~v~~~~~gv~f~i~~~~~~~~~i  356 (374)
                      +.||+|++++|++++|++++. ++.+.|
T Consensus       211 ~~Tni~Vierflpv~f~i~~~-~g~~~v  237 (239)
T d1qmha2         211 LLTNIAVVERFLPVRFSLIET-DGVTRV  237 (239)
T ss_dssp             HHHHHHHHHHHSSCCCEEEEC-SSCEEE
T ss_pred             hhHhHHHHHhcCCceEEEEec-CCeEEE
Confidence            999999999999999999885 444444
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase, RPTC, insert domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure