Psyllid ID: psy2679

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
MATLTRPKSPRPPVSAKKDDKDESFWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLAPEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIKIYYTYMFLICEER
cccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEcccEEEcHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHccccccEEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHHHHEEEEccc
ccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccHHHHcccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHHcHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccccEEEEEHHHcccccccccccEEEEEEEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHccccHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcc
matltrpksprppvsakkddkdesfwdKIGTLGRKKRIKEVQEVEQEgkhaidspgnptnpdlapeeyaleeneersmleprayddpkLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQekldvpevtqseegqKQKLAIVLEAVNKAlglprwsntkwsvesihsknlvPILHLLVSLAlglprwsntkwsvesihsknlvPILHLLVSLVRhfrapvrlpenvSVGVVVVQLdvpevtqseegQKQKLAIVLEAVNKAlglprwsntkwsvesihsknlVPILHLLVSLkkegslshrTIKEEITSTYddlgmrcerdafdtlfdhhpdkLQVVKKSLITFVNKHLAKVNlevtdldtqfhdggffvplhdfyltpqtfEQKVHNVAFAFQLMQDvglakpkarpedefAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFmnstapvvripqkwmlplsyfgyapwsigftSWMTIKIYYTYMFLICEER
matltrpksprppvsakkddkdesfwdkigtlgrkkrIKEVQEVEqegkhaidspgnptnpdLAPEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVpevtqseegqkqKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVpevtqseegqkqkLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKkegslshrtikeeitstyddlgMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIKIYYTYMFLICEER
MATLTRPKSPRPPVSAKKDDKDESFWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLAPeeyaleeneeRSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQIlqklleklnqeklDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENvsvgvvvvqldvpevTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIKIYYTYMFLICEER
***************************************************************************************KLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKL*******************KLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVT*******QKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGL*************************AQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIKIYYTYMFLIC***
*************************WDKIGTLG***************************P****************************QELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLD****************IVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLP******************PILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVP*******************VN*********NTKWSVESIHSKNLVPILHLLVSLKKE*SL**RTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIKIYYTYMFLICEE*
*********************DESFWDKIGTLGRKKRIK******************PTNPDLAPEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIKIYYTYMFLICEER
**********************ESFWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLAPEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYD***MRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIKIYYTYMFLICEER
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MATLTRPKSPRPPVSAKKDDKDESFWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLAPEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKISALQAQLEKECKLNAESCNKIKTMITSILNCLWVLIVAVAFMNSTAPVVRIPQKWMLPLSYFGYAPWSIGFTSWMTIKIYYTYMFLICEER
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query526 2.2.26 [Sep-21-2011]
Q9HB97372 Alpha-parvin OS=Rattus no yes N/A 0.593 0.838 0.469 6e-86
Q9EPC1372 Alpha-parvin OS=Mus muscu yes N/A 0.593 0.838 0.467 3e-85
Q9NVD7372 Alpha-parvin OS=Homo sapi yes N/A 0.593 0.838 0.465 3e-84
Q9HBI1364 Beta-parvin OS=Homo sapie no N/A 0.334 0.483 0.590 1e-56
Q9ES46365 Beta-parvin OS=Mus muscul no N/A 0.334 0.482 0.585 1e-54
O16785375 Paralyzed arrest at two-f yes N/A 0.454 0.637 0.393 2e-42
Q9HBI0331 Gamma-parvin OS=Homo sapi no N/A 0.365 0.580 0.36 8e-29
Q9ERD8331 Gamma-parvin OS=Mus muscu no N/A 0.351 0.558 0.340 2e-25
Q8K0D7174 Tail-anchored protein ins no N/A 0.171 0.517 0.315 0.0003
Q3SZ26174 Tail-anchored protein ins no N/A 0.171 0.517 0.315 0.0004
>sp|Q9HB97|PARVA_RAT Alpha-parvin OS=Rattus norvegicus GN=Parva PE=1 SV=2 Back     alignment and function desciption
 Score =  318 bits (815), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 195/415 (46%), Positives = 246/415 (59%), Gaps = 103/415 (24%)

Query: 21  KDESFWDKIG-TLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLAPEEYALEENEERSML 79
           KD+SF  K+G TL R+K+ KEV E ++EG +AI+ P +P + +L PE+  LEENE R+M+
Sbjct: 25  KDDSFLGKLGGTLARRKKAKEVSEFQEEGMNAINLPLSPISFELDPEDTMLEENEVRTMV 84

Query: 80  EPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVP 139
           +P + +DPKLQEL+ VLI+WIND L  +RIIVKDL EDLYDGQ+LQKL EKL  EKL+V 
Sbjct: 85  DPNSRNDPKLQELMKVLIDWINDVLVGERIIVKDLAEDLYDGQVLQKLFEKLESEKLNVA 144

Query: 140 EVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPR 199
           EVTQSE  QKQKL  VLE +N+AL LP  S  KW+V+S+H+KNLV ILHLLV+L+     
Sbjct: 145 EVTQSEIAQKQKLQTVLEKINEALKLPPRS-IKWNVDSVHAKNLVAILHLLVALS----- 198

Query: 200 WSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEG 259
                                      ++FRAP+RLP++VS+ VVVV        Q  EG
Sbjct: 199 ---------------------------QYFRAPIRLPDHVSIQVVVV--------QKREG 223

Query: 260 QKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEE 319
             Q   I  E            NT+                         +LS R  ++ 
Sbjct: 224 ILQSRQIQEEIT---------GNTE-------------------------ALSGRHERDA 249

Query: 320 ITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG 379
             + +D                H PDKL VVKK+LITFVNKHL K+NLEVT+L+TQF DG
Sbjct: 250 FDTLFD----------------HAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADG 293

Query: 380 -----------GFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
                      G+FVPLH F+LTP +FEQKV NV+FAF+LMQD GL KPK RPED
Sbjct: 294 VYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPED 348
Probably plays a role in the regulation of cell adhesion and cytoskeleton organization. Plays a role in ciliogenesis.
Rattus norvegicus (taxid: 10116)
>sp|Q9EPC1|PARVA_MOUSE Alpha-parvin OS=Mus musculus GN=Parva PE=1 SV=1 Back     alignment and function description
>sp|Q9NVD7|PARVA_HUMAN Alpha-parvin OS=Homo sapiens GN=PARVA PE=1 SV=1 Back     alignment and function description
>sp|Q9HBI1|PARVB_HUMAN Beta-parvin OS=Homo sapiens GN=PARVB PE=1 SV=1 Back     alignment and function description
>sp|Q9ES46|PARVB_MOUSE Beta-parvin OS=Mus musculus GN=Parvb PE=1 SV=1 Back     alignment and function description
>sp|O16785|PARV_CAEEL Paralyzed arrest at two-fold protein 6 OS=Caenorhabditis elegans GN=pat-6 PE=1 SV=1 Back     alignment and function description
>sp|Q9HBI0|PARVG_HUMAN Gamma-parvin OS=Homo sapiens GN=PARVG PE=2 SV=1 Back     alignment and function description
>sp|Q9ERD8|PARVG_MOUSE Gamma-parvin OS=Mus musculus GN=Parvg PE=2 SV=2 Back     alignment and function description
>sp|Q8K0D7|WRB_MOUSE Tail-anchored protein insertion receptor WRB OS=Mus musculus GN=Wrb PE=2 SV=1 Back     alignment and function description
>sp|Q3SZ26|WRB_BOVIN Tail-anchored protein insertion receptor WRB OS=Bos taurus GN=WRB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
291229121379 PREDICTED: parvin, beta-like [Saccogloss 0.621 0.862 0.5 1e-101
443715218363 hypothetical protein CAPTEDRAFT_222253 [ 0.615 0.892 0.487 1e-94
260788852362 hypothetical protein BRAFLDRAFT_80141 [B 0.612 0.889 0.503 4e-92
13569846372 alpha-parvin [Rattus norvegicus] gi|2013 0.593 0.838 0.469 4e-84
149068260372 parvin, alpha, isoform CRA_a [Rattus nor 0.593 0.838 0.467 1e-83
26346240372 unnamed protein product [Mus musculus] 0.593 0.838 0.467 2e-83
31982526372 alpha-parvin [Mus musculus] gi|20139159| 0.593 0.838 0.467 2e-83
198424641357 PREDICTED: similar to parvin, beta [Cion 0.602 0.887 0.453 3e-83
8918812372 unnamed protein product [Mus musculus] 0.593 0.838 0.467 3e-83
410215256412 parvin, alpha [Pan troglodytes] 0.593 0.757 0.467 5e-83
>gi|291229121|ref|XP_002734524.1| PREDICTED: parvin, beta-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/430 (50%), Positives = 262/430 (60%), Gaps = 103/430 (23%)

Query: 7   PKSPRPPVSAKKDDKDESFWDKIGTLGR-KKRIKEVQEVEQEGKHAIDSPGNP-TNPDLA 64
           P +P P    KK+DKD+S +DK+ TLGR KK+IKEV E++ EG+HAIDSP +     D++
Sbjct: 17  PTAPFPWPGTKKEDKDDSLFDKMATLGRSKKKIKEVNELQAEGQHAIDSPTSSLILADIS 76

Query: 65  PEEYALEENEERSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQIL 124
           P+ Y ++ENEERSM+E  + DDPKL+ELI VL+EW N+EL D RIIVKD+EEDL+DGQ+L
Sbjct: 77  PDAYNMDENEERSMIEAESRDDPKLKELITVLLEWTNEELKDHRIIVKDIEEDLFDGQVL 136

Query: 125 QKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLV 184
            KLLEKL   KL+V EVTQSE GQK+KL  VL+ VNK L LPRW   KWSV+SIHSKNL+
Sbjct: 137 GKLLEKLANIKLEVAEVTQSEAGQKKKLKTVLDVVNKMLNLPRWHQQKWSVDSIHSKNLI 196

Query: 185 PILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVV 244
            ILH+LV+LA                                 HF+AP+R+PE+V+V VV
Sbjct: 197 AILHMLVALAF--------------------------------HFKAPIRIPEHVAVQVV 224

Query: 245 VVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVS 304
           V+Q                         K  G+    +T+   E I S N          
Sbjct: 225 VLQ-------------------------KKDGM---LHTRHVTEEITSTN---------- 246

Query: 305 LKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAK 364
                               D +G R ERDAFDTLFDH PDKL VVKKSLITFVNKHL K
Sbjct: 247 --------------------DAVGGRFERDAFDTLFDHAPDKLNVVKKSLITFVNKHLNK 286

Query: 365 VNLEVTDLDTQFHDG-----------GFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVG 413
           +NLEVTDLD+QFHDG           G+FVPL  ++LTP +F+ KVHNV FA  LMQD G
Sbjct: 287 INLEVTDLDSQFHDGVYLVLLMGLLEGYFVPLFCYHLTPTSFDHKVHNVQFAMDLMQDAG 346

Query: 414 LAKPKARPED 423
           L KPKARPED
Sbjct: 347 LPKPKARPED 356

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Order:

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota
>gi|443715218|gb|ELU07313.1| hypothetical protein CAPTEDRAFT_222253 [Capitella teleta] Back     alignment and taxonomy information
>gi|260788852|ref|XP_002589463.1| hypothetical protein BRAFLDRAFT_80141 [Branchiostoma floridae] gi|229274640|gb|EEN45474.1| hypothetical protein BRAFLDRAFT_80141 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|13569846|ref|NP_065707.2| alpha-parvin [Rattus norvegicus] gi|20138815|sp|Q9HB97.2|PARVA_RAT RecName: Full=Alpha-parvin; AltName: Full=Actopaxin gi|13526899|gb|AAG09802.2|AF264765_1 actopaxin [Rattus norvegicus] Back     alignment and taxonomy information
>gi|149068260|gb|EDM17812.1| parvin, alpha, isoform CRA_a [Rattus norvegicus] Back     alignment and taxonomy information
>gi|26346240|dbj|BAC36771.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|31982526|ref|NP_065631.3| alpha-parvin [Mus musculus] gi|20139159|sp|Q9EPC1.1|PARVA_MOUSE RecName: Full=Alpha-parvin; AltName: Full=Actopaxin gi|9964015|gb|AAG09803.1|AF264766_1 actopaxin [Mus musculus] gi|11036544|gb|AAG27175.1|AF237774_1 alpha-parvin [Mus musculus] gi|37589236|gb|AAH59236.1| Parvin, alpha [Mus musculus] gi|148685084|gb|EDL17031.1| parvin, alpha [Mus musculus] Back     alignment and taxonomy information
>gi|198424641|ref|XP_002123530.1| PREDICTED: similar to parvin, beta [Ciona intestinalis] Back     alignment and taxonomy information
>gi|8918812|dbj|BAA97981.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|410215256|gb|JAA04847.1| parvin, alpha [Pan troglodytes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
FB|FBgn0052528367 parvin "parvin" [Drosophila me 0.365 0.523 0.523 8.9e-94
MGI|MGI:2153063365 Parvb "parvin, beta" [Mus musc 0.353 0.509 0.515 3.5e-84
RGD|1311485365 Parvb "parvin, beta" [Rattus n 0.353 0.509 0.515 3.5e-84
UNIPROTKB|Q9HBI1364 PARVB "Beta-parvin" [Homo sapi 0.351 0.508 0.518 7.3e-84
RGD|71021372 Parva "parvin, alpha" [Rattus 0.349 0.494 0.523 9.3e-84
MGI|MGI:1931144372 Parva "parvin, alpha" [Mus mus 0.349 0.494 0.518 2.5e-83
UNIPROTKB|J3KNQ4412 PARVA "Alpha-parvin" [Homo sap 0.349 0.446 0.513 1.3e-82
UNIPROTKB|Q9NVD7372 PARVA "Alpha-parvin" [Homo sap 0.349 0.494 0.513 1.3e-82
UNIPROTKB|E1C891370 PARVB "Uncharacterized protein 0.347 0.494 0.502 4.5e-82
UNIPROTKB|F5H1R9372 PARVA "Alpha-parvin" [Homo sap 0.349 0.494 0.513 5.8e-82
FB|FBgn0052528 parvin "parvin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 527 (190.6 bits), Expect = 8.9e-94, Sum P(2) = 8.9e-94
 Identities = 101/193 (52%), Positives = 139/193 (72%)

Query:     1 MATLTRPKSPRPPVSAKKDDKDESFWDKIGTLGRKKRIKEVQEVEQEGKHAIDSPGNPTN 60
             M+TL RPKSP  P + KK +K++SFWDK  TLGRK+  +EV++V++EGK+AIDSPG+P+ 
Sbjct:     1 MSTLNRPKSPHTPTAIKKGEKEDSFWDKFSTLGRKRGTREVKKVQEEGKYAIDSPGSPSQ 60

Query:    61 PDLAPXXXXXXXXXXRSMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYD 120
              D+ P          R++++P++  DP++ +L  +L++WINDELA+QRIIV+ LEED+YD
Sbjct:    61 YDIPPEDYALREHEQRAVIDPQSISDPQVIKLQRILVDWINDELAEQRIIVQHLEEDMYD 120

Query:   121 GQIXXXXXXXXXXXXXDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHS 180
             GQ+             DVPEVTQSE+GQ +KL IVL+AVN  LG  +    KWSV S+HS
Sbjct:   121 GQVLHKLWEKLTGKKLDVPEVTQSEQGQHEKLNIVLKAVNHTLGFHQ-KIPKWSVASVHS 179

Query:   181 KNLVPILHLLVSL 193
             KN+V ILHLLV+L
Sbjct:   180 KNIVAILHLLVAL 192
GO:0003779 "actin binding" evidence=ISS
GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP
GO:0005925 "focal adhesion" evidence=IDA
GO:0016203 "muscle attachment" evidence=IMP
MGI|MGI:2153063 Parvb "parvin, beta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311485 Parvb "parvin, beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HBI1 PARVB "Beta-parvin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|71021 Parva "parvin, alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1931144 Parva "parvin, alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNQ4 PARVA "Alpha-parvin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVD7 PARVA "Alpha-parvin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C891 PARVB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F5H1R9 PARVA "Alpha-parvin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 1e-12
pfam04420161 pfam04420, CHD5, CHD5-like protein 1e-05
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information 
 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 95  VLIEWINDELA-DQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLA 153
            L+ WIN+ L     + V +  EDL DG  L  LL KL    +D+ +V ++   + + L 
Sbjct: 3   ALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLENLN 62

Query: 154 IVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLAL 195
           + LE   K LG+P+       +  +   N   +L LL  L  
Sbjct: 63  LALEFAEKKLGVPKV-LEPEDL--VEDGNEKLVLTLLAQLFR 101

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104
>gnl|CDD|218079 pfam04420, CHD5, CHD5-like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 526
KOG3631|consensus365 100.0
PF04420161 CHD5: CHD5-like protein; InterPro: IPR007514 Membe 99.91
KOG4253|consensus175 99.76
KOG0517|consensus 2473 99.58
KOG3631|consensus365 99.41
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.22
cd00014107 CH Calponin homology domain; actin-binding domain 99.18
smart00033103 CH Calponin homology domain. Actin binding domains 98.95
cd00014107 CH Calponin homology domain; actin-binding domain 98.84
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 98.81
KOG0035|consensus 890 98.54
COG5069 612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 98.45
KOG0517|consensus 2473 98.38
smart00033103 CH Calponin homology domain. Actin binding domains 98.24
KOG0046|consensus627 97.38
KOG0046|consensus 627 93.93
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 93.42
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 91.44
KOG2046|consensus193 91.11
KOG0516|consensus 1047 89.35
PF01956168 DUF106: Integral membrane protein DUF106; InterPro 84.49
KOG0035|consensus 890 83.59
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 81.4
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 80.41
>KOG3631|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.8e-118  Score=879.63  Aligned_cols=337  Identities=63%  Similarity=0.989  Sum_probs=330.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCcchhhhhh-cccccccchhhHHHHHHHhhhhhcCCCCCCCCCCC-----cccccccccccc
Q psy2679           3 TLTRPKSPRPPVSAKKDDKDESFWDKI-GTLGRKKRIKEVQEVEQEGKHAIDSPGNPTNPDLA-----PEEYALEENEER   76 (526)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~f~~k~-~tl~r~k~~~e~~~~~~eg~~ai~~~~~p~~~~~~-----p~~~~l~e~e~r   76 (526)
                      +++|||||+|.     .+||+||++|+ |||+||||++|++++|+||++||++|..|...+++     |++..|+|||+|
T Consensus         1 ~~~~~kspt~~-----~~k~~~~~~kl~gtlarkkka~e~~~~qe~g~~~~~~e~~~~~lel~~~v~pp~~~~Leege~r   75 (365)
T KOG3631|consen    1 TLSRPKSPTPD-----EKKDPSFLGKLGGTLARKKKAPEVSHLQEEGANAINPEFSPDLLELPKGVEPPEDTELEEGEKR   75 (365)
T ss_pred             CCCCCCCCCCC-----CcCCccHHHhccchhhhcccCcchhhhhhhccccCCCcccchhhhcccCCCCchhhhhhcCCce
Confidence            56899998875     48899999999 69999999999999999999999999999999998     999999999999


Q ss_pred             cccCCCCCCCccHHHHHHHHHHHHhhhhccccccccchhhhhhhhHHHHHHHHHHccCcccccceecChHHHHHHHHHHH
Q psy2679          77 SMLEPRAYDDPKLQELIFVLIEWINDELADQRIIVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEGQKQKLAIVL  156 (526)
Q Consensus        77 ~~~~p~s~~dpk~~el~~~li~WiN~~L~~~riiVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~s~~~qkqkl~~vl  156 (526)
                      +|++|+|+.||||+||+++||+|||++|++||||||+||||||||||||||+|||+++||+|+||||||+||||||++||
T Consensus        76 ~yl~p~sr~DpK~~el~kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~klev~evtqse~~QkqKLq~Vl  155 (365)
T KOG3631|consen   76 TYLDPTSRKDPKFEELVKVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALKLEVAEVTQSEIGQKQKLQTVL  155 (365)
T ss_pred             eccCCccccChhHHHHHHHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhhccchhhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCcccccccccccchhHHHHHHHHhhCCCcccCCccceeecccCchHHHHHHHHHHHHhccCCCCCC
Q psy2679         157 EAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSVESIHSKNLVPILHLLVSLVRHFRAPVRLP  236 (526)
Q Consensus       157 ~~v~~~l~~~~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~s~~kwsv~~I~~knl~ail~LLVaLa~~f~~~~~lp  236 (526)
                      |++|+.|++++|+                                 .||||++||+||++||||||||||.|||||+|||
T Consensus       156 eavnr~L~~~~~q---------------------------------~kWsvdsIh~Kdl~ailhLLVaLa~~frapirlP  202 (365)
T KOG3631|consen  156 EAVNRSLQLPEWQ---------------------------------AKWSVDSIHNKDLVAILHLLVALAKHFRAPIRLP  202 (365)
T ss_pred             HHHHHHhcCchhh---------------------------------hccchhhhccchHHHHHHHHHHHHHHcCCCccCC
Confidence            9999999999998                                 7999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEeccccccchhhhhHHHHHHHHHHHHhhcCCCCCCCCccchhhcccccchhhhhhhhhhccCCcceeeEE
Q psy2679         237 ENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTI  316 (526)
Q Consensus       237 ~nv~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  316 (526)
                      +||+|+|||+|                                                          |++|+++++.+
T Consensus       203 dnV~v~Vvvvq----------------------------------------------------------k~~g~lks~~i  224 (365)
T KOG3631|consen  203 DNVQVQVVVVQ----------------------------------------------------------KREGGLKSEKI  224 (365)
T ss_pred             CceEEEEEEEE----------------------------------------------------------eccccchHHHH
Confidence            99999999999                                                          89999999999


Q ss_pred             EeeecccccccCCccCCChhhhhhcCCChhHHHHHHHHHHHHHHhhcccCccccccccccccc-----------ceeeec
Q psy2679         317 KEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG-----------GFFVPL  385 (526)
Q Consensus       317 ~e~it~~~~~~~~~~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetqFaDG-----------gyFIpL  385 (526)
                      .|+||++.+++.++.+||||||||||+|||+++||+++++|||+||+|+|++|+||||||+||           |||+||
T Consensus       225 ~EqlT~~tt~l~~~~~rDaFDtLFd~aPdKln~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL  304 (365)
T KOG3631|consen  225 VEQLTTYTTDLDGRPERDAFDTLFDHAPDKLNVVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPL  304 (365)
T ss_pred             HHHHhhhhHhhcCCCchhhHHHHHhhCcHHHHHHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeec
Confidence            999999999999999999999999999999999999999999999999999999999999999           999999


Q ss_pred             cccccCCCChhhhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhH
Q psy2679         386 HDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKI  435 (526)
Q Consensus       386 ~~f~LtP~~~~qKLhNVslALELLqd~GL~k~~IspeDIvagdaKLtlki  435 (526)
                      |.|++||.++++|+|||++||++|+|.|+++++.+|+||+|+|+|.|++.
T Consensus       305 ~~F~Ltp~S~eekv~NVsfAfeLm~D~GL~kp~~rpeDIvN~D~KSTLRv  354 (365)
T KOG3631|consen  305 HHFYLTPNSFEEKVHNVSFAFELMKDGGLEKPKVRPEDIVNKDLKSTLRV  354 (365)
T ss_pred             ceeecCCCCHHHHHHHHHHHHHHHHccCcCCCCCChHHhhcccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999886

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein Back     alignment and domain information
>KOG4253|consensus Back     alignment and domain information
>KOG0517|consensus Back     alignment and domain information
>KOG3631|consensus Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0517|consensus Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>KOG0046|consensus Back     alignment and domain information
>KOG0046|consensus Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>KOG2046|consensus Back     alignment and domain information
>KOG0516|consensus Back     alignment and domain information
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
4edl_A133 Crystal Structure Of Beta-Parvin Ch2 Domain Length 4e-37
2vzc_A131 Crystal Structure Of The C-Terminal Calponin Homolo 3e-36
2k2r_A129 The Nmr Structure Of Alpha-Parvin Ch2PAXILLIN LD1 C 4e-36
3kmw_B129 Crystal Structure Of The IlkALPHA-Parvin Core Compl 4e-35
3kmu_B129 Crystal Structure Of The IlkALPHA-Parvin Core Compl 8e-31
>pdb|4EDL|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain Length = 133 Back     alignment and structure 
Iteration: 1

 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 84/105 (80%), Gaps = 11/105 (10%)
Query: 330 RCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG---------- 379
           R ERDAFDTLFDH PDKL VVKKSLITFVNKHL K+NLEVT+L+TQF DG          
Sbjct: 5   RFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLL 64
Query: 380 -GFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
             +FVPLH FYLTP++F+QKVHNV+FAF+LM D GL KPKARPED
Sbjct: 65  EDYFVPLHHFYLTPESFDQKVHNVSFAFELMLDGGLKKPKARPED 109
>pdb|2VZC|A Chain A, Crystal Structure Of The C-Terminal Calponin Homology Domain Of Alpha Parvin Length = 131 Back     alignment and structure
>pdb|2K2R|A Chain A, The Nmr Structure Of Alpha-Parvin Ch2PAXILLIN LD1 COMPLEX Length = 129 Back     alignment and structure
>pdb|3KMW|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 129 Back     alignment and structure
>pdb|3KMU|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 129 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 1e-25
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 4e-07
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 6e-07
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 1e-06
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 7e-04
3hoc_A272 Filamin-A; calponin homology domain, actin binding 8e-06
3hoc_A272 Filamin-A; calponin homology domain, actin binding 2e-04
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 1e-05
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 2e-05
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 4e-05
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 8e-05
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 6e-04
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 1e-04
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 3e-04
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131 Back     alignment and structure
 Score =  101 bits (252), Expect = 1e-25
 Identities = 74/105 (70%), Positives = 83/105 (79%), Gaps = 11/105 (10%)

Query: 330 RCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG---------- 379
           R ERDAFDTLFDH PDKL VVKK+LITFVNKHL K+NLEVT+L+TQF DG          
Sbjct: 3   RHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLL 62

Query: 380 -GFFVPLHDFYLTPQTFEQKVHNVAFAFQLMQDVGLAKPKARPED 423
            G+FVPLH F+LTP +FEQKV NV+FAF+LMQD GL KPK RPED
Sbjct: 63  EGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPED 107
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.95
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 99.92
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 99.89
3hoc_A272 Filamin-A; calponin homology domain, actin binding 99.88
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 99.85
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 99.81
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 99.8
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 99.79
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 99.76
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 99.75
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.74
3hoc_A272 Filamin-A; calponin homology domain, actin binding 99.71
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 99.71
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 99.69
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 99.69
4b7l_A 347 Filamin-B; structural protein, FR 1 filamin hinge 99.67
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 99.62
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 99.57
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 99.57
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 99.56
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 99.5
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 99.5
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 99.45
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 99.32
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 99.32
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.0
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 98.67
3b2e_E84 Golgi to ER traffic protein 1; protein-protein int 98.02
3vlc_E94 Golgi to ER traffic protein 1; ATPase, membrane pr 98.54
3sjb_C93 Golgi to ER traffic protein 1; coiled-coil, recept 98.5
1wyl_A116 NEDD9 interacting protein with calponin homology a 98.06
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 98.02
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 98.0
3sja_C65 Golgi to ER traffic protein 1; coiled-coil, recept 97.98
2d88_A121 Protein mical-3; all alpha, calponin homology doma 97.83
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 97.81
1bhd_A118 Utrophin; calponin homology, actin binding, struct 97.71
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 97.64
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 97.57
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 97.57
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 97.5
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 97.44
1ujo_A144 Transgelin; CH domain, actin binding, structural g 97.38
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 97.32
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 96.58
1wyl_A116 NEDD9 interacting protein with calponin homology a 96.57
2d88_A121 Protein mical-3; all alpha, calponin homology doma 96.44
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 96.39
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 96.36
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 96.32
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 96.26
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 96.16
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 96.07
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 96.02
1bhd_A118 Utrophin; calponin homology, actin binding, struct 96.02
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 95.94
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 95.35
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 93.01
1wix_A164 HOOK homolog 1, RSGI RUH-026; structural genomics, 92.66
2qjz_A123 Microtubule-associated protein RP/EB family member 92.04
2qjz_A123 Microtubule-associated protein RP/EB family member 91.5
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 90.97
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 90.71
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 89.73
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 88.98
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 88.28
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 88.0
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 87.17
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 87.05
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 84.94
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 84.68
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 83.81
2r8u_A268 Microtubule-associated protein RP/EB family member 83.43
1ujo_A144 Transgelin; CH domain, actin binding, structural g 81.77
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 81.5
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
Probab=99.95  E-value=3.3e-29  Score=221.50  Aligned_cols=108  Identities=69%  Similarity=1.073  Sum_probs=101.4

Q ss_pred             CCccCCChhhhhhcCCChhHHHHHHHHHHHHHHhhcccCccccccccccccc-----------ceeeeccccccCCCChh
Q psy2679         328 GMRCERDAFDTLFDHHPDKLQVVKKSLITFVNKHLAKVNLEVTDLDTQFHDG-----------GFFVPLHDFYLTPQTFE  396 (526)
Q Consensus       328 ~~~~~~d~fd~lf~~~PeKl~vVKkTf~~FVNkHL~KlnL~VtDLetqFaDG-----------gyFIpL~~f~LtP~~~~  396 (526)
                      |+|||||+||+|||++|||.++||+||++|||+||++.|++|+||++||+||           +..+|++.|+.+|.++.
T Consensus         1 ~~~~~~~~~~~l~~~~~e~~~~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~   80 (131)
T 2vzc_A            1 SGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFE   80 (131)
T ss_dssp             ----CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHH
T ss_pred             CCCchhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHH
Confidence            5799999999999999999999999999999999999999999999999999           67788899999999999


Q ss_pred             hhHhcHHHHHHHHHHcCCCCCCCCChhhhcccchhhhhH
Q psy2679         397 QKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARLSRKI  435 (526)
Q Consensus       397 qKLhNVslALELLqd~GL~k~~IspeDIvagdaKLtlki  435 (526)
                      ||+|||+.|++++++.|+...+|+++||++|+.|+|+++
T Consensus        81 ~kieNv~~aL~~lk~~gi~l~~I~~~DIvdGn~kliLgL  119 (131)
T 2vzc_A           81 QKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRV  119 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSSCHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCCCHHHhhCCCHHhHHHH
Confidence            999999999999999999999999999999999999986
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction, receptor complex, hydrolase, TR protein, ADP binding, coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae} PDB: 3zs8_C Back     alignment and structure
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 526
d1rt8a_505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 4e-19
d1rt8a_505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 8e-12
d1pxya_500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-16
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 7e-11
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 2e-05
d1sh5a1120 a.40.1.1 (A:8-127) Actin binding domain of plectin 8e-10
d1sh5a1120 a.40.1.1 (A:8-127) Actin binding domain of plectin 5e-06
d1aoaa1131 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros 2e-05
d1aoaa1131 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros 0.003
d1aoaa2116 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros 0.001
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 88.2 bits (218), Expect = 4e-19
 Identities = 57/397 (14%), Positives = 107/397 (26%), Gaps = 95/397 (23%)

Query: 97  IEWINDELADQRII---------VKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQSEEG 147
           I+ IN  LA    +           +  +   DG IL KL+     + +D   + +    
Sbjct: 10  IKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNN 69

Query: 148 QKQKLAIVLEAVNKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLALGLPRWSNTKWSV 207
           +       +E  N  +   +      S+ +I + +++     L                 
Sbjct: 70  KPLDNFKCIENNNVVINSAKA-MGGISITNIGAGDILEGREHL----------------- 111

Query: 208 ESIHSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIV 267
                     IL L+  ++R                 +++ D           ++ L   
Sbjct: 112 ----------ILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRW 161

Query: 268 LEAVNKALGLPRW-SNTKWSVESIHSKNLVPILHL----LVSLKKEGSLSHRTIKEEITS 322
                KA   PR  SN    V     +N   +L+     L S     +       E++  
Sbjct: 162 FNYHLKAANWPRTVSNFSKDVSD--GENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQ 219

Query: 323 TYDDLGMRCERDAFD--------------TLFDHHP-----------------DKLQVVK 351
             + L  R                      LF+ HP                  + +   
Sbjct: 220 NAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREA 279

Query: 352 KSLITFVNKHLAKVNLEVTDLDTQFHDGGFFVPLHDFYLTPQTFE--------------- 396
           +    ++N     V   + D      DG   +  +D  +TP T                 
Sbjct: 280 RVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYD-KITPNTVNWKKVNKAPASGDEMM 336

Query: 397 --QKVHNVAFAFQLMQDVGLAKPKARPEDEFAKHARL 431
             + V N  +A  L ++ G +    +  D       L
Sbjct: 337 RFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTL 373
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 99.94
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 99.89
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 99.76
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.7
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.7
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.62
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.54
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.43
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 99.33
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.26
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.91
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.68
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 98.39
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 98.34
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 98.12
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 98.0
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 97.88
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 97.88
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 97.68
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 97.47
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 97.1
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 96.95
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 96.7
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 96.41
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 96.34
d1wixa_164 Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId 92.51
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 92.15
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 87.75
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=1.1e-25  Score=231.68  Aligned_cols=298  Identities=14%  Similarity=0.174  Sum_probs=200.8

Q ss_pred             HHHHHHHHhhhhccccc---------cccchhhhhhhhHHHHHHHHHHccCcccccceec----ChHHHHHHHHHHHHHH
Q psy2679          93 IFVLIEWINDELADQRI---------IVKDLEEDLYDGQILQKLLEKLNQEKLDVPEVTQ----SEEGQKQKLAIVLEAV  159 (526)
Q Consensus        93 ~~~li~WiN~~L~~~ri---------iVkdl~eDLyDG~vL~~Llekl~~~kl~v~ev~~----s~~~qkqkl~~vl~~v  159 (526)
                      .+++..|||..|++.+.         -|.||.+||+||.+|.+|+|.|+|.+++...+..    +-..+.+++..+|+++
T Consensus         3 k~tft~WiN~~L~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~~~   82 (500)
T d1pxya_           3 KGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSA   82 (500)
T ss_dssp             HHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHhccCccccccCCCCCcHHHHHHHhhhHHHHHHHHHHHcCCccchhhhcCCCCccHHHHHHHHHHHHHHH
Confidence            36789999999999865         4899999999999999999999999998665543    2245678999999999


Q ss_pred             HHHcCCCCCCCCcccccccccccchhHHHHHHHHh--hCCCcc------------------------cC----Ccccee-
Q psy2679         160 NKALGLPRWSNTKWSVESIHSKNLVPILHLLVSLA--LGLPRW------------------------SN----TKWSVE-  208 (526)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~i~~k~~~~~~~~~~~~~--~~~~~~------------------------s~----~kwsv~-  208 (526)
                      . ..|..-..   =++|.|--.|.-.||||+.+..  +-++..                        |.    .+|-=. 
T Consensus        83 k-~~gi~lvn---I~~~dIvdGn~~liLgLlW~ii~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~LL~W~n~~  158 (500)
T d1pxya_          83 K-AVGCSVVN---IGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFH  158 (500)
T ss_dssp             H-HTTCCCTT---CCHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSCC-----------------CCSCHHHHHHHHHHHH
T ss_pred             H-HcCCEEec---cChhhhhcCCHHHHHHHHHHHHHHHHHhhhccccCcchhccccCCccchhhccCCHHHHHHHHHHHh
Confidence            5 44543211   2345566666678999999887  211111                        00    124210 


Q ss_pred             --------ec--ccCchHHHHHHHHHHHHhccCCCCCCCCeEEEEEEEEeccccccchhhhhHHHHHHHHHHHHhhcCCC
Q psy2679         209 --------SI--HSKNLVPILHLLVSLVRHFRAPVRLPENVSVGVVVVQLDVPEVTQSEEGQKQKLAIVLEAVNKALGLP  278 (526)
Q Consensus       209 --------~I--~~knl~ail~LLVaLa~~f~~~~~lp~nv~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (526)
                              .|  +++|+.. -+.+.+|..+++|..              .|..+++.++.  .+++-.++++.. .||+|
T Consensus       159 l~~~~~~~~v~nf~~d~~d-G~~~~~Ll~~~~P~~--------------~~~~~~~~~~~--~~~~~~a~~~a~-~lgip  220 (500)
T d1pxya_         159 LKKGGYKKTVSNFSADLKD-AQAYAFLLNVLAPEH--------------CDPATLDAKDP--LERAELVLSHAE-RMNCK  220 (500)
T ss_dssp             HHHTTCCSCCCCSSTTTTT-SHHHHHHHHHHCGGG--------------CCGGGGGCCSH--HHHHHHHHHHHH-HTTCC
T ss_pred             ccccCCCceeecCcCCchh-HHHHHHHHHHHCCCc--------------cChhhcCcCCH--HHHHHHHHHHHH-HhCCC
Confidence                    11  2333332 345566777777643              24555555544  455556667654 49999


Q ss_pred             CCCCCccchhhcccccchhhhhhhhhhccCCcceeeEEEeeecccccccCCccCCChhhhhhcCCChhHHHHHHHHHHHH
Q psy2679         279 RWSNTKWSVESIHSKNLVPILHLLVSLKKEGSLSHRTIKEEITSTYDDLGMRCERDAFDTLFDHHPDKLQVVKKSLITFV  358 (526)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~e~it~~~~~~~~~~~~d~fd~lf~~~PeKl~vVKkTf~~FV  358 (526)
                      ++-    ++|.|...|-.-++.++..+-.               ++..+ ...+.+.+++.++..++ ...+++||++|+
T Consensus       221 ~~l----~peDI~~~~~k~~l~~va~lf~---------------~~p~~-~~~~~~~~~~~~~e~~~-~~~~~ktf~~Wi  279 (500)
T d1pxya_         221 RYL----TAEEIVEGSSTLNLAFVAQIFH---------------ERNGL-NKDGKYAFAEMMTEDVE-TCRDERCYRLWI  279 (500)
T ss_dssp             CCC----CHHHHHTTCHHHHHHHHHHHHH---------------HCCCC-C-------------CCH-HHHHHHHHHHHH
T ss_pred             ccC----CHHHhcCCcHHHHHHHHHHHHH---------------hcccc-ccccchhhhhhhhhhhh-hhhhHHHHHHHH
Confidence            984    6778888877667766665533               12211 12344567777775554 457899999999


Q ss_pred             HHhhcccCcccccccccccccceee-----------eccccccCC-CChhhhHhcHHHHHHHHHHcCCCCCCCCChhhhc
Q psy2679         359 NKHLAKVNLEVTDLDTQFHDGGFFV-----------PLHDFYLTP-QTFEQKVHNVAFAFQLMQDVGLAKPKARPEDEFA  426 (526)
Q Consensus       359 NkHL~KlnL~VtDLetqFaDGgyFI-----------pL~~f~LtP-~~~~qKLhNVslALELLqd~GL~k~~IspeDIva  426 (526)
                      |+|  .++..|+||++||+||.+|+           |....+..| .++.+|++|++.|++++++.|+...+|+++||++
T Consensus       280 Ns~--~~~~~V~dL~~dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~ki~N~~~al~~~~~~gi~l~~I~~~DI~d  357 (500)
T d1pxya_         280 NSL--GIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQ  357 (500)
T ss_dssp             TTT--TCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHHHTTCCCCSCCHHHHHT
T ss_pred             hcc--CCCCCcchHHHHHhhhHHHHHHHHHhcCCCCChhhcCCCcccchHHHHHHHHHHHHHHHHcCCccCCCChHHhhc
Confidence            999  46789999999999995555           332223333 4688999999999999999999999999999999


Q ss_pred             ccchhhhhH
Q psy2679         427 KHARLSRKI  435 (526)
Q Consensus       427 gdaKLtlki  435 (526)
                      |+.|+|+++
T Consensus       358 G~~k~iLgL  366 (500)
T d1pxya_         358 GNKKLILGL  366 (500)
T ss_dssp             TCHHHHHHH
T ss_pred             cchhhHHHH
Confidence            999999987
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure