Psyllid ID: psy2681
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 211 | 2.2.26 [Sep-21-2011] | |||||||
| Q767L0 | 807 | ATP-binding cassette sub- | yes | N/A | 0.781 | 0.204 | 0.6 | 1e-54 | |
| Q6P542 | 837 | ATP-binding cassette sub- | yes | N/A | 0.777 | 0.195 | 0.603 | 2e-54 | |
| Q6MG08 | 839 | ATP-binding cassette sub- | yes | N/A | 0.777 | 0.195 | 0.603 | 3e-54 | |
| Q8NE71 | 845 | ATP-binding cassette sub- | yes | N/A | 0.777 | 0.194 | 0.597 | 6e-54 | |
| Q7YR37 | 807 | ATP-binding cassette sub- | yes | N/A | 0.777 | 0.203 | 0.597 | 6e-54 | |
| Q9M1H3 | 723 | ABC transporter F family | yes | N/A | 0.748 | 0.218 | 0.464 | 3e-38 | |
| Q2KJA2 | 625 | ATP-binding cassette sub- | no | N/A | 0.753 | 0.254 | 0.478 | 2e-35 | |
| Q9UG63 | 623 | ATP-binding cassette sub- | no | N/A | 0.753 | 0.255 | 0.478 | 2e-35 | |
| Q99LE6 | 628 | ATP-binding cassette sub- | no | N/A | 0.753 | 0.253 | 0.478 | 2e-35 | |
| Q8K268 | 709 | ATP-binding cassette sub- | no | N/A | 0.753 | 0.224 | 0.462 | 6e-34 |
| >sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 212 bits (540), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 127/165 (76%)
Query: 33 KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 92
+GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI
Sbjct: 641 RGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTI 700
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G VI+VSHD
Sbjct: 701 QICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHD 760
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 761 ARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVSRP 805
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Sus scrofa (taxid: 9823) |
| >sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/164 (60%), Positives = 126/164 (76%)
Query: 34 GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP 93
GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI
Sbjct: 672 GEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSFNLPYQDARKCLGRFGLESHAHTIQ 731
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153
I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI +Y+G VI+VSHD
Sbjct: 732 ICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDYKGAVIVVSHDA 791
Query: 154 RLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
RLI ET+C+LW +E++ + + +GDFDDY+ ++L +LGE MV P
Sbjct: 792 RLITETNCQLWVVEEQGVSQIDGDFDDYKREVLEALGEVMVNRP 835
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Mus musculus (taxid: 10090) |
| >sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/164 (60%), Positives = 126/164 (76%)
Query: 34 GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP 93
GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI
Sbjct: 674 GEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQ 733
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153
I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G VI+VSHD
Sbjct: 734 ICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDA 793
Query: 154 RLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 794 RLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRP 837
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 126/164 (76%)
Query: 34 GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP 93
GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI
Sbjct: 680 GEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQ 739
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153
I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G VI+VSHD
Sbjct: 740 ICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDA 799
Query: 154 RLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 800 RLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVSRP 843
|
Isoform 2 is required for efficient Cap- and IRES-mediated mRNA translation initiation. Isoform 2 is not involved in the ribosome biogenesis. Homo sapiens (taxid: 9606) |
| >sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 126/164 (76%)
Query: 34 GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP 93
GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI
Sbjct: 642 GEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQ 701
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153
I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G VI+VSHD
Sbjct: 702 ICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDA 761
Query: 154 RLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 762 RLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVSRP 805
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Pan troglodytes (taxid: 9598) |
| >sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 12/170 (7%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL------FNLPYEKSRRQL 80
G+L P +GE+R+S +LRIG++ QH + L +TP +YL++L F+ E R +L
Sbjct: 545 GDLVPTEGEMRRSQKLRIGRYSQHFVDLLTMGETPVQYLLRLHPDQEGFS-KQEAVRAKL 603
Query: 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
G FGLPS+ H PI LSGGQKARV ++++ P IL+LDEPTN+LD++SIDALA+A+
Sbjct: 604 GKFGLPSHNHLSPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALD 663
Query: 141 NYQGGVILVSHDERLI-----RETDCELWALEKKNIRKFNGDFDDYREKL 185
+ GGV+LVSHD RLI E ++W +E + F G F++Y+E L
Sbjct: 664 EFTGGVVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNFFPGTFEEYKEDL 713
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2KJA2|ABCF2_BOVIN ATP-binding cassette sub-family F member 2 OS=Bos taurus GN=ABCF2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Query: 31 PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS--RRQLGMFGLPSY 88
P G +RK ++IG++ QH E L D +P EY+MK + EK R+ +G +GL
Sbjct: 451 PTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGK 510
Query: 89 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVIL 148
PIR+LS GQK RV LA L NP +L LDEPTN+LDIE+IDALA+AI +++GG++L
Sbjct: 511 QQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINDFEGGMML 570
Query: 149 VSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 189
VSHD RLI++ E+W EK+ I K+ GD Y+E L + L
Sbjct: 571 VSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKL 611
|
Bos taurus (taxid: 9913) |
| >sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 31 PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS--RRQLGMFGLPSY 88
P G +RK ++IG++ QH E L D +P EY+MK + EK R+ +G +GL
Sbjct: 449 PTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGK 508
Query: 89 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVIL 148
PIR+LS GQK RV LA L NP +L LDEPTN+LDIE+IDALA+AI ++GG++L
Sbjct: 509 QQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMML 568
Query: 149 VSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 189
VSHD RLI++ E+W EK+ I K+ GD Y+E L + L
Sbjct: 569 VSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKL 609
|
Homo sapiens (taxid: 9606) |
| >sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 31 PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS--RRQLGMFGLPSY 88
P G +RK ++IG++ QH E L D +P EY+MK + EK R+ +G +GL
Sbjct: 454 PTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGK 513
Query: 89 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVIL 148
PIR+LS GQK RV LA L NP +L LDEPTN+LDIE+IDALA+AI ++GG++L
Sbjct: 514 QQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMML 573
Query: 149 VSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 189
VSHD RLI++ E+W EK+ I K+ GD Y+E L + L
Sbjct: 574 VSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKL 614
|
Mus musculus (taxid: 10090) |
| >sp|Q8K268|ABCF3_MOUSE ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 1/160 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL 85
G+L+P +G L+IG F QH E L + + E L + F LP E+ R QLG +G+
Sbjct: 540 GDLSPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGLPEEEYRHQLGRYGI 599
Query: 86 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145
P+ LSGGQK+RVA A++T+ P+ ILDEPTN+LD+E+I+AL +A+ N++GG
Sbjct: 600 SGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGQALNNFRGG 659
Query: 146 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 185
VILVSHDER IR ELW E ++ + G FD YR L
Sbjct: 660 VILVSHDERFIRLVCKELWVCENGSVTRVEGGFDQYRALL 699
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 211 | ||||||
| 321462792 | 936 | ABC protein, subfamily ABCF [Daphnia pul | 0.829 | 0.186 | 0.721 | 2e-69 | |
| 383848444 | 632 | PREDICTED: ATP-binding cassette sub-fami | 0.933 | 0.311 | 0.655 | 2e-69 | |
| 91076670 | 807 | PREDICTED: similar to AGAP012249-PA [Tri | 0.824 | 0.215 | 0.714 | 3e-69 | |
| 156544038 | 627 | PREDICTED: ATP-binding cassette sub-fami | 0.824 | 0.277 | 0.708 | 3e-68 | |
| 391330522 | 770 | PREDICTED: ATP-binding cassette sub-fami | 0.834 | 0.228 | 0.706 | 1e-67 | |
| 322795259 | 647 | hypothetical protein SINV_01158 [Solenop | 0.819 | 0.267 | 0.701 | 1e-67 | |
| 193676397 | 1024 | PREDICTED: ATP-binding cassette sub-fami | 0.824 | 0.169 | 0.68 | 5e-67 | |
| 93139440 | 238 | P-glycoprotein [Lepeophtheirus salmonis] | 0.834 | 0.739 | 0.672 | 5e-67 | |
| 158300342 | 910 | AGAP012249-PA [Anopheles gambiae str. PE | 0.824 | 0.191 | 0.697 | 5e-67 | |
| 340711562 | 632 | PREDICTED: LOW QUALITY PROTEIN: ATP-bind | 0.824 | 0.275 | 0.697 | 7e-67 |
| >gi|321462792|gb|EFX73813.1| ABC protein, subfamily ABCF [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/176 (72%), Positives = 151/176 (85%), Gaps = 1/176 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
GEL+P +GE RK+ RLRIG+FDQHSGEHL ++TP EYLM+LFNLPYEK+R+QLG FGL
Sbjct: 756 GELSPQQGEQRKNHRLRIGRFDQHSGEHLTAEETPAEYLMRLFNLPYEKARKQLGSFGLA 815
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI DLSGGQKARVALAEL LN PD+LILDEPTNNLDIESIDALAEA+ +Y+GGV
Sbjct: 816 SHAHTIKNMDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALAEAMNDYKGGV 875
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAAE 202
I+VSHDERLIRET+C+LW +E + I + G FDDYR +LL SLGE ++ NPSVAA+
Sbjct: 876 IIVSHDERLIRETNCQLWVIEDQTINEIEGGFDDYRRELLDSLGE-VINNPSVAAK 930
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383848444|ref|XP_003699860.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 163/200 (81%), Gaps = 3/200 (1%)
Query: 4 MCLKLRIAVL--QGLRNPLSFIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 61
M L RIA++ G+ G+L PN+GE+ K+ RLRIGKFDQHSGEHL ++TP
Sbjct: 428 MDLNSRIAIVGPNGVGKSTFLKLLTGDLQPNRGEVSKNHRLRIGKFDQHSGEHLTAEETP 487
Query: 62 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
EYLM+LFNLPYEK+R+QLG FGL S+AHTI ++DLSGGQKARVALAEL LN PD++ILD
Sbjct: 488 SEYLMRLFNLPYEKARKQLGTFGLSSHAHTIKMKDLSGGQKARVALAELCLNAPDVVILD 547
Query: 122 EPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181
EPTNNLDIESIDALA+AI +Y+GGVI+VSHDERLIRET+C L+ +E + I + +GDFDDY
Sbjct: 548 EPTNNLDIESIDALADAINDYKGGVIIVSHDERLIRETECCLYVIENQQINEIDGDFDDY 607
Query: 182 REKLLTSLGEAMVYNPSVAA 201
R++LL SLGE ++ NPS+AA
Sbjct: 608 RKELLESLGE-VINNPSIAA 626
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076670|ref|XP_971562.1| PREDICTED: similar to AGAP012249-PA [Tribolium castaneum] gi|270002367|gb|EEZ98814.1| hypothetical protein TcasGA2_TC004420 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/175 (71%), Positives = 153/175 (87%), Gaps = 1/175 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+L P +GE+RK+ RLRIG+FDQHSGEHL ++TP EYLM+LF+LPYEKSR+QLG FGL
Sbjct: 628 GDLDPQQGEVRKNHRLRIGRFDQHSGEHLTAEETPAEYLMRLFDLPYEKSRKQLGTFGLA 687
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI ++DLSGGQKARVALAEL LN PD+LILDEPTNNLDIESIDALAEAI ++ GGV
Sbjct: 688 SHAHTIKMKDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALAEAINDFSGGV 747
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 201
I+VSHDERLIRETDC L+ +E + I + +GDFDDYR++LL SLGE ++ +PS+AA
Sbjct: 748 IIVSHDERLIRETDCALYVIEDQTINELDGDFDDYRKELLESLGE-VINSPSIAA 801
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156544038|ref|XP_001604621.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/175 (70%), Positives = 153/175 (87%), Gaps = 1/175 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
GEL+PNKGEL ++ RLRIG+FDQHSGEHL ++TP EYL++LF+LPYEK+R+QLG FGL
Sbjct: 448 GELSPNKGELIRNHRLRIGRFDQHSGEHLTAEETPTEYLIRLFDLPYEKARKQLGTFGLS 507
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI ++DLSGGQKARVALAEL LN PD+LILDEPTNNLDIESIDAL EAI Y+GGV
Sbjct: 508 SHAHTIKMKDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALGEAITRYKGGV 567
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 201
++VSHDERLIR+T+C L+ +E + I + +GDFDDYR++LL SLGE +V NPS+AA
Sbjct: 568 VIVSHDERLIRDTECCLYVIENQTINEIDGDFDDYRKELLESLGE-IVNNPSIAA 621
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|391330522|ref|XP_003739709.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Metaseiulus occidentalis] | Back alignment and taxonomy information |
|---|
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/177 (70%), Positives = 146/177 (82%), Gaps = 1/177 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP GE R++ RLRIGKFDQHSGEHL P +TP EYL +LFNL Y+ +R+QLG FGL
Sbjct: 592 GDLTPTVGEARRNHRLRIGKFDQHSGEHLNPAETPVEYLQRLFNLNYQDARKQLGTFGLV 651
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
SYAHTI DLSGGQKARVALAEL L +PD+LILDEPTNNLDIESIDALAEAI Y+GGV
Sbjct: 652 SYAHTILNSDLSGGQKARVALAELCLKSPDVLILDEPTNNLDIESIDALAEAISEYEGGV 711
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAAEQ 203
I+VSHDERLIRET+C+LW +E + I + NGDFDDYR ++L LGE + NPSV A+Q
Sbjct: 712 IIVSHDERLIRETNCQLWIIEHRGIDEINGDFDDYRREILEQLGE-QINNPSVVAKQ 767
|
Source: Metaseiulus occidentalis Species: Metaseiulus occidentalis Genus: Metaseiulus Family: Phytoseiidae Order: Mesostigmata Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322795259|gb|EFZ18064.1| hypothetical protein SINV_01158 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/174 (70%), Positives = 151/174 (86%), Gaps = 1/174 (0%)
Query: 28 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 87
++TP KGE+ K+ RLRIG+FDQHSGEHL ++TP EYLM+LF+LPYEK+R+QLG FGL S
Sbjct: 469 DITPQKGEITKNHRLRIGRFDQHSGEHLTAEETPAEYLMRLFDLPYEKARKQLGTFGLSS 528
Query: 88 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVI 147
+AHTI ++DLSGGQKARVALAEL LN PD+LILDEPTNNLDIESIDALA+AI Y+GGVI
Sbjct: 529 HAHTIKMKDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALADAINEYKGGVI 588
Query: 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 201
+VSHDERLIR+T+C L+ +E + I +GDFDDYR++LL SLGE ++ NPS+AA
Sbjct: 589 IVSHDERLIRDTECCLYVIENQQINAIDGDFDDYRKELLESLGE-VINNPSIAA 641
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193676397|ref|XP_001947037.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 119/175 (68%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+L P GE+RK+ R+++GKFDQHSGEHL ++TP EYLM+LF+LPYEK+R+QLG FGL
Sbjct: 845 GDLQPTIGEMRKNHRMKLGKFDQHSGEHLTAEETPAEYLMRLFDLPYEKARKQLGTFGLA 904
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
+AHTI ++DLSGGQKARVALAEL LN PD++ILDEPTNNLDIESIDALAEAI +Y+GGV
Sbjct: 905 GHAHTIRMKDLSGGQKARVALAELCLNAPDVIILDEPTNNLDIESIDALAEAINDYKGGV 964
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 201
I+VSHDERLIR+T+C LW +E + I + +GDFDDYR++LL LGE ++ +PS+AA
Sbjct: 965 IIVSHDERLIRDTECTLWVIEDQTINEVDGDFDDYRKELLECLGE-VINSPSIAA 1018
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|93139440|gb|ABF00018.1| P-glycoprotein [Lepeophtheirus salmonis] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 119/177 (67%), Positives = 153/177 (86%), Gaps = 1/177 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+L P KGE+RK+ RL+IG+FDQHSGEHL D++P EY+M+LFNLP EK+R+QLG FGL
Sbjct: 58 GDLEPTKGEMRKNARLKIGRFDQHSGEHLTADESPTEYIMRLFNLPVEKARKQLGSFGLQ 117
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI ++DLSGGQK+RVALAELTL+ PD++ILDEPTNNLDIESIDAL +AI+ Y+GGV
Sbjct: 118 SHAHTIKMKDLSGGQKSRVALAELTLSAPDVVILDEPTNNLDIESIDALGDAIREYKGGV 177
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAAEQ 203
I+V+HDERLIR+T+C+LW +E++ I + GDFDDYR+++L SLGE V NPS+ A Q
Sbjct: 178 IIVTHDERLIRDTECQLWVVEEQTINEIEGDFDDYRKEVLDSLGEE-VNNPSLIANQ 233
|
Source: Lepeophtheirus salmonis Species: Lepeophtheirus salmonis Genus: Lepeophtheirus Family: Caligidae Order: Siphonostomatoida Class: Maxillopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158300342|ref|XP_320293.4| AGAP012249-PA [Anopheles gambiae str. PEST] gi|157013113|gb|EAA00265.4| AGAP012249-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/175 (69%), Positives = 151/175 (86%), Gaps = 1/175 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
GEL P +GE +++ RLRIG+FDQHSGEHL ++TP EYL +LFNLPYEK+R+QLG FGL
Sbjct: 731 GELDPVQGEAKRNHRLRIGRFDQHSGEHLTAEETPAEYLQRLFNLPYEKARKQLGTFGLA 790
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI ++DLSGGQKARVALAEL LN PD+LILDEPTNNLDIESIDALAEAI Y+GGV
Sbjct: 791 SHAHTIKMKDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALAEAINEYKGGV 850
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 201
I+VSHDERLIRET+C L+ +E + I + +GDFDDYR+++L SLGE ++ NPS++A
Sbjct: 851 IIVSHDERLIRETECTLFVIEDQTINEVDGDFDDYRKEVLDSLGE-VINNPSISA 904
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340711562|ref|XP_003394344.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family F member 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/175 (69%), Positives = 152/175 (86%), Gaps = 1/175 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
+L P KGEL ++ RLRIGKFDQHSGEHL ++TP EYLM+LF+LPYEK+R+QLG FGL
Sbjct: 453 ADLQPVKGELIRNHRLRIGKFDQHSGEHLTAEETPSEYLMRLFDLPYEKARKQLGTFGLS 512
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI ++DLSGGQKARVALAEL LN PD++ILDEPTNNLDIESIDALA+AI +Y+GGV
Sbjct: 513 SHAHTIKMKDLSGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINDYKGGV 572
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 201
I+VSHDERLIR+T+C L+ +E + I + +GDFDDYR++LL SLGE ++ NPS+AA
Sbjct: 573 IIVSHDERLIRDTECCLYVIENQQINEIDGDFDDYRKELLESLGE-VINNPSIAA 626
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 211 | ||||||
| FB|FBgn0030321 | 901 | CG1703 [Drosophila melanogaste | 0.919 | 0.215 | 0.623 | 1.7e-59 | |
| MGI|MGI:1351658 | 837 | Abcf1 "ATP-binding cassette, s | 0.810 | 0.204 | 0.602 | 1.8e-52 | |
| UNIPROTKB|Q767L0 | 807 | ABCF1 "ATP-binding cassette su | 0.810 | 0.211 | 0.602 | 2e-52 | |
| RGD|620286 | 839 | Abcf1 "ATP-binding cassette, s | 0.810 | 0.203 | 0.602 | 3e-52 | |
| UNIPROTKB|Q6MG08 | 839 | Abcf1 "ATP-binding cassette su | 0.810 | 0.203 | 0.602 | 3e-52 | |
| UNIPROTKB|K7GL02 | 842 | ABCF1 "ATP-binding cassette, s | 0.810 | 0.203 | 0.602 | 3.1e-52 | |
| WB|WBGene00006512 | 622 | abcf-1 [Caenorhabditis elegans | 0.796 | 0.270 | 0.589 | 3.5e-52 | |
| UNIPROTKB|J9NXH0 | 787 | ABCF1 "Uncharacterized protein | 0.810 | 0.217 | 0.596 | 4.2e-52 | |
| UNIPROTKB|H0YGW7 | 596 | ABCF1 "ATP-binding cassette su | 0.810 | 0.286 | 0.596 | 5.6e-52 | |
| UNIPROTKB|F6Y789 | 841 | ABCF1 "Uncharacterized protein | 0.810 | 0.203 | 0.596 | 8.6e-52 |
| FB|FBgn0030321 CG1703 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 124/199 (62%), Positives = 157/199 (78%)
Query: 6 LKLRIAVL--QGLRNPLSFIKPK-GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC 62
L R+A++ G+ +F+K GEL P +GE RK+ RL +G+FDQHSGEHL +++
Sbjct: 699 LTSRVAIVGPNGVGKS-TFLKLLLGELEPQEGEQRKNHRLHVGRFDQHSGEHLTAEESAA 757
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122
EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L+ PD+LILDE
Sbjct: 758 EYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCLSAPDVLILDE 817
Query: 123 PTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182
PTNNLDIESIDALAEAI Y+GGVI+VSHDERLIRET C L+ +E + I + G+FDDYR
Sbjct: 818 PTNNLDIESIDALAEAINEYEGGVIIVSHDERLIRETGCTLYVIEDQTINEIVGEFDDYR 877
Query: 183 EKLLTSLGEAMVYNPSVAA 201
+++L SLGE +V NPSV A
Sbjct: 878 KEVLDSLGE-VVNNPSVVA 895
|
|
| MGI|MGI:1351658 Abcf1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 1.8e-52, P = 1.8e-52
Identities = 103/171 (60%), Positives = 131/171 (76%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 665 GKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSFNLPYQDARKCLGRFGLE 724
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI +Y+G V
Sbjct: 725 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDYKGAV 784
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
I+VSHD RLI ET+C+LW +E++ + + +GDFDDY+ ++L +LGE MV P
Sbjct: 785 IVVSHDARLITETNCQLWVVEEQGVSQIDGDFDDYKREVLEALGEVMVNRP 835
|
|
| UNIPROTKB|Q767L0 ABCF1 "ATP-binding cassette sub-family F member 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 2.0e-52, P = 2.0e-52
Identities = 103/171 (60%), Positives = 132/171 (77%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 635 GKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLE 694
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G V
Sbjct: 695 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 754
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
I+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 755 IVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVSRP 805
|
|
| RGD|620286 Abcf1 "ATP-binding cassette, subfamily F (GCN20), member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 3.0e-52, P = 3.0e-52
Identities = 103/171 (60%), Positives = 131/171 (76%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 667 GKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRFGLE 726
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G V
Sbjct: 727 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 786
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
I+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 787 IVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRP 837
|
|
| UNIPROTKB|Q6MG08 Abcf1 "ATP-binding cassette sub-family F member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 3.0e-52, P = 3.0e-52
Identities = 103/171 (60%), Positives = 131/171 (76%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 667 GKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRFGLE 726
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G V
Sbjct: 727 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 786
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
I+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 787 IVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRP 837
|
|
| UNIPROTKB|K7GL02 ABCF1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 3.1e-52, P = 3.1e-52
Identities = 103/171 (60%), Positives = 132/171 (77%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 670 GKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLE 729
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G V
Sbjct: 730 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 789
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
I+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 790 IVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVSRP 840
|
|
| WB|WBGene00006512 abcf-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 99/168 (58%), Positives = 133/168 (79%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G++ PN GELRK LRIG FDQH+ E L + TP E+L FN+ Y+++R+QLG GL
Sbjct: 452 GKIDPNDGELRKHRTLRIGWFDQHANEALNGEQTPVEFLCTKFNIDYQEARKQLGTTGLA 511
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
++AHT+ I+DLSGGQK+RVAL L L PDI+ILDEPTNNLDIESIDALAEAI+++ GGV
Sbjct: 512 AHAHTVKIKDLSGGQKSRVALCNLALGGPDIIILDEPTNNLDIESIDALAEAIRDFNGGV 571
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMV 194
++V+HDERL+ TDC LW +E + I + +GDF+DY++++L +LGEA+V
Sbjct: 572 VMVTHDERLVVRTDCNLWVVENQGIDEIDGDFEDYKKEVLDALGEALV 619
|
|
| UNIPROTKB|J9NXH0 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 4.2e-52, P = 4.2e-52
Identities = 102/171 (59%), Positives = 132/171 (77%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 615 GKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLE 674
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G V
Sbjct: 675 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 734
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
I+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 735 IVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVNRP 785
|
|
| UNIPROTKB|H0YGW7 ABCF1 "ATP-binding cassette sub-family F member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 102/171 (59%), Positives = 131/171 (76%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 424 GKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLE 483
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G V
Sbjct: 484 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 543
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
I+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 544 IVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVSRP 594
|
|
| UNIPROTKB|F6Y789 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 8.6e-52, P = 8.6e-52
Identities = 102/171 (59%), Positives = 132/171 (77%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 669 GKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLE 728
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G V
Sbjct: 729 SHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAV 788
Query: 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 197
I+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 789 IVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVNRP 839
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q767L0 | ABCF1_PIG | No assigned EC number | 0.6 | 0.7819 | 0.2044 | yes | N/A |
| Q7YR37 | ABCF1_PANTR | No assigned EC number | 0.5975 | 0.7772 | 0.2032 | yes | N/A |
| Q6P542 | ABCF1_MOUSE | No assigned EC number | 0.6036 | 0.7772 | 0.1959 | yes | N/A |
| Q6MG08 | ABCF1_RAT | No assigned EC number | 0.6036 | 0.7772 | 0.1954 | yes | N/A |
| Q8NE71 | ABCF1_HUMAN | No assigned EC number | 0.5975 | 0.7772 | 0.1940 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 211 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-50 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-38 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-33 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-31 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-31 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-22 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-21 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-19 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-18 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-18 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-18 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-17 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-17 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-17 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-17 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-16 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-15 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-15 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-14 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 2e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-14 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-14 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-13 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-13 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-13 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-13 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-12 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-12 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-12 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-12 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-12 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-12 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-11 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-11 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-11 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-11 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-11 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-10 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-10 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-10 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-09 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-09 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-09 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-09 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-09 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 8e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-09 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-08 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-08 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-08 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-08 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-08 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-08 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-08 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-08 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 8e-08 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-07 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-07 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-06 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-06 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-06 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 6e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-06 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-05 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 2e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 2e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-05 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 5e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 8e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 9e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-04 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 2e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 2e-04 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 4e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-04 | |
| COG4637 | 373 | COG4637, COG4637, Predicted ATPase [General functi | 5e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 6e-04 | |
| pfam13558 | 79 | pfam13558, SbcCD_C, Putative exonuclease SbcCD, C | 7e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 9e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.001 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.001 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.001 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.001 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.001 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 0.001 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.001 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.002 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.002 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.002 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.002 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.002 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 0.002 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.003 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.003 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 0.003 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.004 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-50
Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL 85
GEL P G ++ ++IG FDQH + L PD T E L + F + ++ R LG FG
Sbjct: 370 GELGPLSGTVKVGETVKIGYFDQHR-DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428
Query: 86 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145
P+ LSGG+KAR+ LA+L L P++L+LDEPTN+LDIES++AL EA+ +++G
Sbjct: 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT 488
Query: 146 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 185
V+LVSHD + +W +E K + +F G ++DY E+
Sbjct: 489 VLLVSHDRYFLDRVATRIWLVEDK-VEEFEGGYEDYLEQK 527
|
Length = 530 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 4e-38
Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL 85
GEL P+ G + +S ++R+ F QH + L P Y+M+ F +P +K R LG FG+
Sbjct: 557 GELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 616
Query: 86 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145
P+ LSGGQK+RVA A++T P IL+LDEP+N+LD+++++AL + + +QGG
Sbjct: 617 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGG 676
Query: 146 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 185
V++VSHDE LI + ELW + + + F+G F DY++ L
Sbjct: 677 VLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716
|
Length = 718 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-33
Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 47/143 (32%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
GEL P++G + ++IG F+Q
Sbjct: 48 GELEPDEGIVTWGSTVKIGYFEQ------------------------------------- 70
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146
LSGG+K R+ALA+L L NP++L+LDEPTN+LD+ESI+AL EA+K Y G V
Sbjct: 71 ----------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTV 120
Query: 147 ILVSHDERLIRETDCELWALEKK 169
ILVSHD + + ++ LE
Sbjct: 121 ILVSHDRYFLDQVATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-31
Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 37/193 (19%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR-------- 78
GEL P+ GE+ + LR+G Q L P+ T +Y+++ F E
Sbjct: 51 GELEPDSGEVTRPKGLRVGYLSQEP--PLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108
Query: 79 ----------------QLGMFGLPSYAHTI-----------PIRDLSGGQKARVALAELT 111
+L + L + A P+ LSGG + RVALA
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168
Query: 112 LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNI 171
L PD+L+LDEPTN+LD+ESI+ L + +K Y G VI+VSHD + + L++ +
Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKL 228
Query: 172 RKFNGDFDDYREK 184
+ G++ Y E+
Sbjct: 229 TPYKGNYSSYLEQ 241
|
Length = 530 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-31
Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-LGMFGL 85
GEL P GE+ + +++G F QH E L D++P ++L +L E+ R LG FG
Sbjct: 360 GELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGF 419
Query: 86 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 145
T R SGG+KAR+ LA + P++L+LDEPTN+LD++ AL EA+ +++G
Sbjct: 420 QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGA 479
Query: 146 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLL 186
+++VSHD L+R T +L+ + + F+GD +DY++ L
Sbjct: 480 LVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLS 520
|
Length = 638 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-22
Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 23/168 (13%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK--------SRR 78
G+L + G + +L + FDQH E L P+ T + NL K R
Sbjct: 367 GQLQADSGRIHCGTKLEVAYFDQHRAE-LDPEKTVMD------NLAEGKQEVMVNGRPRH 419
Query: 79 QLG-----MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
LG +F P A T P++ LSGG++ R+ LA L L ++LILDEPTN+LD+E+++
Sbjct: 420 VLGYLQDFLFH-PKRAMT-PVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE 477
Query: 134 ALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKN-IRKFNGDFDD 180
L E + +YQG V+LVSHD + + T E W E I ++ G + D
Sbjct: 478 LLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525
|
Length = 635 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-21
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 16/164 (9%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQL-- 80
GEL P+ G ++ S IG + Q + F +D + LF+ E Q
Sbjct: 367 GELEPDSGTVKWSENANIGYYAQDH-AYDFEND------LTLFDWMSQWRQEGDDEQAVR 419
Query: 81 GMFG-LPSYAHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
G G L I ++ LSGG+K R+ +L + P++L++DEPTN++D+ESI++L
Sbjct: 420 GTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479
Query: 138 AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181
A++ Y+G +I VSHD + + + + F+G +++Y
Sbjct: 480 ALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523
|
Length = 530 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 4e-20
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 20/144 (13%)
Query: 27 GELTPNKGELR---KSPRLRIGKFDQHSG-----EHLFPDDTPCEYLM---KLFNLPYEK 75
G L P GE+ K + G L+P+ T E L +L+ L E+
Sbjct: 53 GLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE 112
Query: 76 SRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
+ + L +FGL A+ +R LSGG K R+++A L++P++LILDEPT+ LD ES
Sbjct: 113 AEERIEELLELFGLEDKANK-KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 132 IDALAEAIKNY--QGG--VILVSH 151
+ E ++ +GG ++L +H
Sbjct: 172 RREIWELLRELAKEGGVTILLSTH 195
|
Length = 293 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 1e-19
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 66 MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
++ LP E+ + L + GL LSGGQK RVA+A + +PDIL+LD
Sbjct: 101 LENLGLPEEEIEERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGVLAMDPDILLLD 159
Query: 122 EPTNNLDIESIDALAEAIKNYQG---GVILVSHDERLIRE 158
EPT LD L E +K + +I+V+HD L+ E
Sbjct: 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
+ LSGG++ RVAL L L+ PD+L+LDEPTN+LD ES+ L + ++ Y G V+ V+HD
Sbjct: 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHD 217
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-18
Identities = 42/115 (36%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 27 GELTPNKGEL------------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74
G L P G + RK R RIG Q LFP+ T E L F L +
Sbjct: 9 GLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP--QLFPELTVRENLF--FGLRDK 64
Query: 75 KSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125
++ + L GLP + P+ LSGGQK RVA+A L P +L+LDEPT
Sbjct: 65 EADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 2e-18
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
+ LSGG++ RVAL L L PD+L+LDEPTN+LD ES+ L + + +Y G V+ V+HD
Sbjct: 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219
|
Length = 556 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 4e-18
Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 20 LSFIKP-KGELTPNKGELRK-SPRLRIGKFDQHSG-EHLFP---DDT---PCEYLMKLFN 70
L +KP GE+ +RK RLRIG Q S + FP D F
Sbjct: 51 LGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110
Query: 71 LPYEKSRR-------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
+K + ++GM I +LSGGQK RV LA NPD+L+LDEP
Sbjct: 111 RLNKKDKEKVDEALERVGMED---LRDR-QIGELSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 124 TNNLDIESIDALAEAIKNY--QG-GVILVSHD 152
+D+ + + +K +G V++V+HD
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198
|
Length = 254 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 7e-18
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 68 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
+ LP E+ RR++G + LSGGQ+ RVALA L NPD+L+LDEPT+ L
Sbjct: 63 IAKLPLEELRRRIGY-----------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGL 111
Query: 128 DIESIDALAEAIKNYQGG---VILVSHDERLIRE 158
D S + L E ++ VI+V+HD L
Sbjct: 112 DPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-17
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL + LSGG + AL ++NPD+L+LDEPTN+LDIE+I+ L +
Sbjct: 143 LAQLGLD--PDA-ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199
Query: 140 KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181
K +QG +I +SHD IR + L++ + + G++D Y
Sbjct: 200 KTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
|
Length = 635 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-17
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 54 HLFPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 106
+L PD T P K + L + GL +LSGGQ+ RVA
Sbjct: 93 NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152
Query: 107 LAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRETD 160
+A +NNP I++ DEPT NLD ++ ++ L E K +I+V+HD L + D
Sbjct: 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210
|
Length = 226 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-17
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 11/174 (6%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY------LMKLFNLPYE-KSRRQ 79
G+ P+ G ++ +++ DQ S + L P+ T E +++L E SR
Sbjct: 370 GQEQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIQLGK--REVPSRAY 426
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
+G F + LSGG++ RV LA+ + ++L+LDEPTN+LD+E++ AL EA+
Sbjct: 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486
Query: 140 KNYQGGVILVSHDERLIRETDCELWALE-KKNIRKFNGDFDDYREKLLTSLGEA 192
+ G +++SHD + + A E ++ F G++ +Y E LGE
Sbjct: 487 LEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGED 540
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-17
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 12 VLQGLRNPLSFIKP-KGELTPNKGELRKSPRLR-IGKFDQHSGEHLFPDDTPCEYLMKLF 69
+L GL IK G + N ++ R + IG Q LF D E L+ L
Sbjct: 45 ILAGL------IKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98
Query: 70 NLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
L E++ L L + P LSGGQK R+A+A L+ D+LI DEPT+ L
Sbjct: 99 ELDAGNEQAETVLKDLDLYALKERHP-LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
Query: 128 DIESIDALAEAIKNYQG---GVILVSHDERLI 156
D ++++ + E I+ VI+++HD +
Sbjct: 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFL 189
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 6e-17
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-- 131
E++ L GL + P +LSGGQ+ RVA+A N+P I++ DEPT NLD E+
Sbjct: 119 ERAEELLERVGLGDRLNHYP-SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 132 --IDALAEAIKNYQGGVILVSHDERLIRETD 160
++ L E K +++V+HD L D
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDPELAEYAD 208
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 74.3 bits (184), Expect = 6e-17
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 94 IRD--LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILV 149
IR+ LSGGQ+ R+A+A L +P ILILDE T+ LD E+ + EA++ G VI++
Sbjct: 92 IRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVI 151
Query: 150 SHDERLIRETD 160
+H IR+ D
Sbjct: 152 AHRLSTIRDAD 162
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-16
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 9/113 (7%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
G+P H + +++ G K RV LA+ +NPDIL+LDEPTNNLDI +I L + +
Sbjct: 143 GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERN 202
Query: 144 GGVILVSHDERLIRETDCELWA-LEKKNIRKFNGDFDDY-------REKLLTS 188
+I++SHD R + C A L+ +R + G++D+Y RE+LL
Sbjct: 203 STMIIISHD-RHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLAD 254
|
Length = 530 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-16
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 27 GELTPNKGELRKSP------RLRIGKFDQHSG-EHLFPDD------TPCEYLMKLFNLPY 73
G L P G +R R RIG Q + FP LF
Sbjct: 47 GLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF-RRL 105
Query: 74 EKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
K+ + L GL A I +LSGGQ+ RV LA + +PD+L+LDEP +D
Sbjct: 106 SKADKAKVDEALERVGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 129 IESIDALAEAIKNYQG---GVILVSHD 152
++ + + E ++ + +++V+HD
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHD 191
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-15
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL P +LSGGQK RVA+A + P+IL+LDEPT LD + L E +
Sbjct: 123 LELVGLEELLDR-PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 140 KNY--QGG--VILVSHDERLIRETDCELWALEKKNIRKF 174
K +GG +I+V+HD L+ E + L+ I
Sbjct: 182 KKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220
|
Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 69.7 bits (172), Expect = 4e-15
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD 152
LSGG K R+ALA+ L++P++LILDEPT+ LD ES E ++ ++L SH
Sbjct: 95 KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154
Query: 153 ERLIRE 158
Sbjct: 155 LEEAER 160
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-14
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+ALA L+ P IL+LDE T+ LD E+ + + + G VI+++H
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669
Query: 155 LIRETD 160
IR D
Sbjct: 670 TIRSAD 675
|
Length = 709 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-14
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 12/83 (14%)
Query: 97 LSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNYQGG---- 145
SGG+K R+ALAE +N IL LDEPT NLD E+I+ +LAE I+ +
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175
Query: 146 VILVSHDERLIRETDCELWALEK 168
+I+++HDE L+ D ++ +EK
Sbjct: 176 LIVITHDEELVDAAD-HIYRVEK 197
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-14
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
LSGGQ R+ALA L+ +L+LDEPT +LD E+ + AL E K Q V++++
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVIT 512
Query: 151 HDERLIRETDC 161
H + D
Sbjct: 513 HRLEDAADADR 523
|
Length = 559 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 73 YEKSRRQLGMFGLP------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126
+++ L GLP Y H LSGG + RV +A P +LI DEPT
Sbjct: 130 RKRAVELLEQVGLPDPERRDRYPH-----QLSGGMRQRVMIAMALALKPKLLIADEPTTA 184
Query: 127 LD----IESIDALAEAIKNYQGGVILVSHDERLIRET 159
LD + +D L + + V+ ++HD ++ E
Sbjct: 185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
|
Length = 539 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 4e-14
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP----CEYLMKLFNLP----YEKSRR 78
GE +K ++ K R ++G Q +LFP T +K+ L EK+
Sbjct: 63 GEDVGDKKDILKL-RRKVGMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138
L GL A P + LSGGQ+ RVA+A +P +++ DEPT+ LD E + + +
Sbjct: 120 LLEKVGLADKADAYPAQ-LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 139 IKNY--QG-GVILVSHDERLIRE 158
+K+ +G +I+V+H+ RE
Sbjct: 179 MKDLAEEGMTMIIVTHEMGFARE 201
|
Length = 240 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 5e-14
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 32/133 (24%)
Query: 40 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----FGLPS-----YA 89
PR+ IG E + E L L +++R++ + GLP Y
Sbjct: 97 PRMTIG-------EQI------AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP 143
Query: 90 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGG 145
H +LSGGQ+ RVA+A NP +LI DEPT+ LD+ +D L + +
Sbjct: 144 H-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198
Query: 146 VILVSHDERLIRE 158
++ ++HD ++ +
Sbjct: 199 LLFITHDLGVVAK 211
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-14
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDE 153
LSGGQ+ R+ LA NP IL+LDEP ++LD+E AL +AI + I+++H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 154 RLIRETD 160
+ D
Sbjct: 157 ETLASAD 163
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 6e-14
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 74 EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI--- 129
++ L GLP S+ P +LSGGQ+ R+A+A + P +LILDEPT+ LD+
Sbjct: 119 QRIAELLDQVGLPPSFLDRRP-HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 130 -ESIDALAEAIKNYQGGVILVSHDERLIR 157
+ ++ L E K + +SHD L+
Sbjct: 178 AQILNLLLELKKERGLTYLFISHDLALVE 206
|
Length = 252 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 1e-13
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVIL 148
P +LSGG++ RV LA P IL+LDEPT++LDI E ++ L + V++
Sbjct: 94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153
Query: 149 VSHD 152
V HD
Sbjct: 154 VLHD 157
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 1e-13
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 24/146 (16%)
Query: 27 GELTPNKGEL----------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 76
GEL P G RK+ R +G Q LF + T E+L +
Sbjct: 50 GELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA--LFDELTVREHLR-FYARLKGLP 106
Query: 77 RRQ--------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ + L + GL A+ R LSGG K +++LA + P +L+LDEPT+ LD
Sbjct: 107 KSEIKEEVELLLRVLGLTDKANK-RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
Query: 129 IESIDALAEAIKNYQGG--VILVSHD 152
S A+ + I + G +IL +H
Sbjct: 166 PASRRAIWDLILEVRKGRSIILTTHS 191
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-13
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDT---PCEYLMKLFNLP----YEKSRRQLGMFG 84
+ ELR+ R +IG Q LFP T +L P EK+ L + G
Sbjct: 61 SPVELREVRRKKIGMVFQQFA--LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG 118
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---- 140
L Y H P +LSGG + RV LA PDIL++DE + LD D++ + +K
Sbjct: 119 LEEYEHRYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 141 NYQGGVILVSHD 152
Q ++ ++HD
Sbjct: 178 TLQKTIVFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-13
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
LSGGQ R+ALA L + +L+LDEPT +LD E+ + EA++ G V+LV+H
Sbjct: 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR 516
Query: 153 ERLIRETDCELWAL 166
L D + L
Sbjct: 517 LALAALAD-RIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-13
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122
L +L + ++ L + GL A ++ S G K R+ +A L NPD+LILDE
Sbjct: 94 RLLARLLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIALALLGNPDLLILDE 152
Query: 123 PTNNLDIESIDALAEAIKNY--QGGVILVS 150
PTN LD + I L E I + QG +L+S
Sbjct: 153 PTNGLDPDGIKELRELILSLRDQGITVLIS 182
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-13
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 27 GELTPNKG---------------ELRKSPRLRIGKFDQHSGEHLFPDDTPCE----YLMK 67
G L P+ G EL + R R+G Q LF T E L +
Sbjct: 48 GLLRPDSGEVLIDGEDISGLSEAELYRL-RRRMGMLFQSGA--LFDSLTVFENVAFPLRE 104
Query: 68 LFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
L E+ R L GL P +LSGG K RVALA +P++L+ DEP
Sbjct: 105 HTRLSEEEIREIVLEKLEAVGLRGAEDLYP-AELSGGMKKRVALARALALDPELLLYDEP 163
Query: 124 TNNLDIESIDALAEAIKNYQG----GVILVSHD 152
T LD + + + I++ + I+V+HD
Sbjct: 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-13
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESID 133
L GL A P + LSGG++ RVA+A +N+P +L+ DEPT NLD E I
Sbjct: 119 GAALRQVGLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177
Query: 134 ALAEAIKNYQGGVILVSHDERLIR 157
L + + VI+ +HD L+
Sbjct: 178 DLLKRLNKRGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-13
Identities = 32/99 (32%), Positives = 64/99 (64%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
P+ D SGG + R+ LA+ + D+L+LDEPTN+LD++++ L + +K+YQG +IL+SHD
Sbjct: 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHD 205
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 191
+ ++ +E++++ ++ G++ + + T L +
Sbjct: 206 RDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQ 244
|
Length = 638 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK-- 140
GL +P+ LS GQ+ RVALA L L+ + ILDEP LD E + L +
Sbjct: 118 VGLAGLED-LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
Query: 141 -NYQGGVILVSHDER 154
G V+L +H
Sbjct: 177 AAQGGIVLLTTHQPL 191
|
Length = 209 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 5e-13
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
R LSGGQ+ VALA LN+P IL+LDEPT+ +D+ S + L E ++ G +I+++H
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHR 198
Query: 153 ERLIRETD 160
L+ D
Sbjct: 199 PSLLDLVD 206
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 6e-13
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142
GL AH +P LS GQK RVALA L ++N I ILDEPT LD ++ AE I+ +
Sbjct: 115 VGLAPLAH-LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
Query: 143 --QGGVILVS 150
QGG+++ +
Sbjct: 174 LAQGGIVIAA 183
|
Length = 207 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-12
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFG 84
++ ELR+ R +I Q L P T E + +++ +P E++ L + G
Sbjct: 92 SRKELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVG 149
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIK 140
L + H P +LSGG + RV LA +PDIL++DE + LD E D L
Sbjct: 150 LEGWEHKYP-DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 141 NYQGGVILVSHD 152
Q ++ ++HD
Sbjct: 209 ELQKTIVFITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-12
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 16/92 (17%)
Query: 74 EKSRRQLGM----FGLPSYAHTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPT 124
RR++GM F L + + + LSGGQ+ RVALA +PD+L+LDEPT
Sbjct: 72 PPLRRRIGMVFQDFALFP---HLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT 128
Query: 125 NNLDIE---SIDALAEAIKNYQG-GVILVSHD 152
+ LD + AL ++++ G V+LV+HD
Sbjct: 129 SALDPITRREVRALLKSLQAQLGITVVLVTHD 160
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-12
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 31/184 (16%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY------LMKLFNLPYE-KSRRQ 79
G+ P+ G ++ +++ DQ S + L P+ T E ++K+ N E SR
Sbjct: 372 GQEQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIKVGN--REIPSRAY 428
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
+G F + LSGG++ R+ LA+ ++L+LDEPTN+LD+E++ AL EA+
Sbjct: 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488
Query: 140 KNYQGGVILVSHDERLIRETDCELWALEK-----------KNIRKFNGDFDDYREKLLTS 188
+ G +++SHD W L++ + F G+F +Y E
Sbjct: 489 LEFPGCAVVISHDR----------WFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKKRR 538
Query: 189 LGEA 192
LG
Sbjct: 539 LGAD 542
|
Length = 556 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-12
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 73 YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
+++ + + + GL SY P +LSGGQK RVALA + PD L+ DEPT LD +
Sbjct: 142 KKRAAKYIELVGLDESYLQRSPF-ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 132 IDALAEAIKN-YQGG--VILVSHD 152
+ + E N + G +ILV+HD
Sbjct: 201 VKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-12
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 16/99 (16%)
Query: 72 PYEKSRRQLGMFGLPSYAHTIP-------IRDL----SGGQKARVALAELTLNNPDILIL 120
P E++R LG+F Y IP +R + SGG+K R + +L L PD+ IL
Sbjct: 71 PEERAR--LGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAIL 128
Query: 121 DEPTNNLDIESIDALAEAIKNYQG---GVILVSHDERLI 156
DEP + LDI+++ +AE I + V++++H +RL+
Sbjct: 129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLL 167
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-12
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142
GL + +P LS GQ+ R+ALA L L+ + ILDEPT LD + LA ++ +
Sbjct: 116 GLTGFED-LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174
Query: 143 --QGGVILVSHDERLIRET 159
G V+L +H + + E
Sbjct: 175 ARGGIVLLTTHQDLGLVEA 193
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-12
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVSHDE 153
LSGGQ+ R+ALA +P +++LDEP +NLD E ALA AI +GG V++++H
Sbjct: 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP 532
Query: 154 RLIRETD 160
+ D
Sbjct: 533 SALASVD 539
|
Length = 580 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-12
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL +P +LSGG++ RVA+A +N+P ILI DEPT NLD ++ + +
Sbjct: 121 LELVGLSHKHRALP-AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179
Query: 140 K--NYQGGVILVS-HDERLIRETDCELWALEK 168
K N G ++V+ H + L+ T + ALE+
Sbjct: 180 KKINKAGTTVVVATHAKELVDTTRHRVIALER 211
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-12
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 73 YEKSRRQLGMFGLP-------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125
E++ L + G+P SY H +LSGG + RV +A NP +LI DEPT
Sbjct: 128 KERAIELLELVGIPDPERRLKSYPH-----ELSGGMRQRVMIAMALALNPKLLIADEPTT 182
Query: 126 NLDIES----IDALAEAIKNYQGGVILVSHDERLIRE 158
LD+ +D L E + +IL++HD ++ E
Sbjct: 183 ALDVTVQAQILDLLKELQREKGTALILITHDLGVVAE 219
|
Length = 316 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-12
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----I 129
E+++ L + GL + P LSGG + RVA+A P +L+LDEP LD
Sbjct: 109 ERAKELLELVGLAGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167
Query: 130 ESIDALAEAIKNYQGGVILVSHD 152
E D L + + V+LV+HD
Sbjct: 168 ELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-12
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI--- 129
E L + GL A P+ +LSGG++ RV +A IL+LDEPT++LDI
Sbjct: 116 EEIVEEALELLGLEHLADR-PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 130 -ESIDALAEAIKNYQGGVILVSHD 152
E ++ L + + V++V HD
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHD 198
|
Length = 258 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-12
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 16 LRNPLSFIKP-KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNL 71
R L ++P +GE+T N G L + + RIG + G L+P T + YL +L +
Sbjct: 45 FRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG--LYPKMTVEDQLKYLAELKGM 102
Query: 72 PYEKSRRQLGM----FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
P + +++L + I++LS G + ++ ++ P++LILDEP + L
Sbjct: 103 PKAEIQKKLQAWLERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161
Query: 128 DIESIDALAEAIKNY--QGGVILVS-----HDERLIRETDCELWALEKKNIRKFNGDFDD 180
D +++ L +AI +G I+ S H E L C+ + KK G +D
Sbjct: 162 DPVNVELLKDAIFELKEEGATIIFSSHRMEHVEEL-----CDRLLMLKKGQTVLYGTVED 216
Query: 181 YR 182
R
Sbjct: 217 IR 218
|
Length = 300 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 7e-12
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQLGMF 83
G + P++G ++++ +LRIG Q L+ D T ++L P K L
Sbjct: 52 GLVAPDEGVIKRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRL--RPGTKKEDILPAL 105
Query: 84 GLPSYAHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
H I P++ LSGG+ RV LA LN P +L+LDEPT +D+ AL + I
Sbjct: 106 KRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ 165
Query: 142 YQG----GVILVSHDERLI 156
+ V++VSHD L+
Sbjct: 166 LRRELDCAVLMVSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-12
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A L NP ILILDE T+ LD E+ + +A+K G ++++H
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 155 LIRETDCELWALEKKNIRKF 174
I+ D + L+ I +
Sbjct: 526 TIKNAD-RIIVLDNGRIVER 544
|
Length = 567 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-12
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 35/172 (20%)
Query: 12 VLQGLRNPLSFIKPKGELTPNKGELRKSPRLRIGKF-DQHSG-----EHLFPDDTPCEYL 65
+L GL NP S GE+ N L K K ++ G HL PD T E +
Sbjct: 50 LLGGLDNPTS-----GEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV 104
Query: 66 MKLFNLPY-----------EKSRRQLGMFGLPSYAHTIPIR--DLSGGQKARVALAELTL 112
+P E++ L GL H I R +LSGG++ RVA+A +
Sbjct: 105 A----MPLLIGKKSVKEAKERAYEMLEKVGL---EHRINHRPSELSGGERQRVAIARALV 157
Query: 113 NNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETD 160
N P +++ DEPT NLD + + + + + ++V+HD L ++ D
Sbjct: 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLD 209
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 9e-12
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 73 YEKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130
+ +R + + GL Y P +LSGGQK RVA+A + P ILILDEPT LD +
Sbjct: 120 ENRVKRAMNIVGLDYEDYKDKSPF-ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178
Query: 131 SIDALAEAIKN----YQGGVILVSH 151
D + IK Y +ILVSH
Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSH 203
|
Length = 287 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDE 153
LSGGQ+ R+ALA +P +++LDEP +NLD E ALA AIK + V++++H
Sbjct: 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP 514
Query: 154 RLIRETD 160
L+ D
Sbjct: 515 SLLGCVD 521
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
++ L GL P LSGG++ RVALA PD+L DEPT NLD +
Sbjct: 123 SRAGAKALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181
Query: 132 IDALAEAI--KNYQGG--VILVSHDERL 155
D +A+ + N + G ++LV+HD +L
Sbjct: 182 GDKIADLLFALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-11
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 151
R LSGGQ+ VALA L +P IL+LDEPT+ +D S + + +K + G ++LV+H
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 2e-11
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 64 YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 119
+ +KL +P + R + L + GL + P +LSGGQ+ RVALA P +L+
Sbjct: 95 FGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-HELSGGQQQRVALARALAREPSLLL 153
Query: 120 LDEPTNNLDIESIDALAEAIKNYQGG----VILVSHD 152
LDEP + LD + + L E +K Q I V+HD
Sbjct: 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A L +P ILILDE T+ LD ES + A++ +++H R
Sbjct: 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAH--R 196
Query: 155 L--IRETD 160
L I D
Sbjct: 197 LSTIENAD 204
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 27 GELTPNKGELR-------KSPRLRIGKFDQHSG-----EHLFPDDTPCE---YLMKLFNL 71
GE P +G++ + I + G L PD T E +++
Sbjct: 50 GEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK 109
Query: 72 PYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
P + RR+ L + GL A +P LSGG++ RVA+A +N P +L+ DEPT NL
Sbjct: 110 PPREIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 128 DIESIDALAEAIK------NYQG-GVILVSHDERLIR 157
D L+ I N G V++ +HD L+
Sbjct: 169 D----PDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 2e-11
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E++ L GL A P +LS GQ+ R+ +A +P +L+LDEP L+ E +
Sbjct: 122 ERAEELLERVGLADLADR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180
Query: 134 ALAEAIK--NYQG-GVILVSHDERLIRE 158
LAE I+ +G V+LV HD ++
Sbjct: 181 ELAELIRELRERGITVLLVEHDMDVVMS 208
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E++R L GL + P +LSGGQK RVA+A ++ P +++ DEPT LD +S
Sbjct: 120 ERARAMLEAVGLGDHLDYYP-HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178
Query: 134 ALAEAIKN---YQGGVIL-VSHDERLIRETD 160
+ E ++ QG IL V+HD R++ D
Sbjct: 179 DVVELMQKLAREQGCTILIVTHDNRILDVAD 209
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFG 84
+ ELR+ R +I Q L P T E + +++ +P E++ L + G
Sbjct: 96 SAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVG 153
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIK 140
L YA P +LSGG + RV LA N+PDIL++DE + LD E D L E
Sbjct: 154 LEGYADKYP-NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 141 NYQGGVILVSHD 152
+ ++ ++HD
Sbjct: 213 KLKKTIVFITHD 224
|
Length = 386 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-11
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
+ R L G P LSGG+K RVA+A PD+L+LDEPT LD +
Sbjct: 106 RRVREALTAVGASGLRER-PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164
Query: 134 ALAEAIKNY--QG-GVILVSHDERLI 156
+ ++ +G V++ +HD L
Sbjct: 165 QMLAILRRLRAEGMTVVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-11
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHD 152
LSGGQ+ R+ LA N P++L+LDEPT+ LD S + E I + +++V+H+
Sbjct: 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-11
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 28 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----YEKSRRQ 79
+LT +K + + R ++G Q +LFP T E + K+ + E++
Sbjct: 63 KLTDDKKNINEL-RQKVGMVFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALEL 119
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL A P LSGGQ+ RVA+A NP +++ DEPT+ LD E + + + +
Sbjct: 120 LEKVGLADKADAYP-AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 140 KNY-QGG--VILVSHDERLIRE 158
K+ + G +++V+H+ RE
Sbjct: 179 KDLAEEGMTMVVVTHEMGFARE 200
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-11
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM-----------KLFNLPYEKSRRQ- 79
ELRK R IG Q L P + E ++ LF L ++ + Q
Sbjct: 72 KGKELRKL-RRDIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA 128
Query: 80 ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----I 132
L G+ A+ LSGGQ+ RVA+A + P I++ DEP +LD ES +
Sbjct: 129 LDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 133 DALAEAIKNYQGGVILVSHDERLIRE 158
D L + + VI+ H L ++
Sbjct: 188 DILKDINQEDGITVIVNLHQVDLAKK 213
|
Length = 258 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 5e-11
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---E 130
E++ L + GL + + P LSGG + RVALA +PD+L+LDEP + LD E
Sbjct: 110 ERAEELLELVGLSGFENAYP-HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 131 SI-DALAEAIKNYQGGVILVSHD 152
+ + L + + V+LV+HD
Sbjct: 169 QLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-11
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL +A P LSGGQ+ RVALA + P +L+LDEP + LD + + + + +
Sbjct: 121 LELVGLEGFADRKP-HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKEL 179
Query: 140 KNYQG----GVILVSHD 152
K Q + V+HD
Sbjct: 180 KELQRELGITFVYVTHD 196
|
Length = 352 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-11
Identities = 51/184 (27%), Positives = 72/184 (39%), Gaps = 31/184 (16%)
Query: 27 GELTPNKGELR--------------KSPRLRIGKFDQHSGEHLFPDDTPCE----YLMKL 68
G L P+KGE+ R R+G Q LF T E L +
Sbjct: 56 GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA--LFSSLTVFENVAFPLREH 113
Query: 69 FNLPYEKSRRQ----LGMFGL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
LP R L + GL + A P +LSGG + RVALA +P++L LDEP
Sbjct: 114 TKLPESLIRELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 124 TNNLDIESIDALAEAIKNYQ----GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179
T+ LD S + E I+ VI+V+HD + + L + G +
Sbjct: 173 TSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV-IAEGTPE 231
Query: 180 DYRE 183
+
Sbjct: 232 ELLA 235
|
Length = 263 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-11
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--YQGGVILVSHD 152
R LSGG++ R+A A L L+ P + LDE T+ LD E+ D L + +K VI V H
Sbjct: 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
Query: 153 ERLIR 157
L
Sbjct: 574 PTLWN 578
|
Length = 604 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-11
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 55 LFPDDTPCEYLM-----KLFNLPYEKSRRQ-----LGMFGLPSYAHTI-----PIRDLSG 99
P T E+LM ++ +K +R+ L GL A+T ++ LSG
Sbjct: 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSG 169
Query: 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGG--VILVSH 151
G++ R+A A L +P +L DEPT+ LD ++ + +K Q G +I H
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 9e-11
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A L NP IL+LDE T+ LD ES + EA+ G I+++H R
Sbjct: 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH--R 197
Query: 155 L--IRETDC 161
L IR D
Sbjct: 198 LSTIRNADL 206
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 1e-10
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155
LSGG++ R+A A L L+ P + LDE T+ LD ES D L + +K VI V H L
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSL 150
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-10
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--N 141
GL A P LSGGQK RVA+A NNP IL+ DE T+ LD E+ ++ E +K N
Sbjct: 130 GLSDKADRYP-AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN 188
Query: 142 YQGG--VILVSHDERLIRE 158
+ G ++L++H+ +++
Sbjct: 189 RELGLTIVLITHEMEVVKR 207
|
Length = 339 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-10
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 152
LSGG+K RVALA P++L+LDEP + LD + L + KN VI V+HD
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-10
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFG 84
+ ELRK+ R RIG QH +L T E +++ +P E+ L + G
Sbjct: 73 SGKELRKA-RRRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVG 129
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NY 142
L A P LSGGQK RV +A NNP +L+ DE T+ LD E+ ++ ++ N
Sbjct: 130 LEDKADAYP-AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 143 QGG--VILVSHDERLIRE 158
+ G ++L++H+ +++
Sbjct: 189 ELGLTIVLITHEMEVVKR 206
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-10
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL + P+ LS GQ+ RVALA L L+ + ILDEPT LD + AEA+
Sbjct: 110 LARVGLNGFED-RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
Query: 140 KNY--QGG-VILVSH-----DERLIRETD 160
+ +GG V+L +H E RE D
Sbjct: 169 AGHCARGGMVVLTTHQDLGLSEAGARELD 197
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-10
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 16 LRNPLSFIKP-KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNL 71
+R L I P GE+ + L + R RIG + G L+P + YL +L L
Sbjct: 43 IRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG--LYPKMKVIDQLVYLAQLKGL 100
Query: 72 PYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
E++RR+ L L YA+ + +LS G + +V +++P++LILDEP + L
Sbjct: 101 KKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159
Query: 128 DIESIDALAEAIKNYQGG---VILVSH 151
D +++ L + I+ VIL +H
Sbjct: 160 DPVNVELLKDVIRELARAGKTVILSTH 186
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-10
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 54 HLFPDDTPCEYL-MKLF------NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 106
HL PD T E + M L ++ L GL A+ P +LSGG++ RVA
Sbjct: 97 HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP-SELSGGERQRVA 155
Query: 107 LAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGV--ILVSHDERL 155
+A +NNP +++ DEPT NLD + D++ + + N G ++V+HD +L
Sbjct: 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208
|
Length = 233 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-10
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E+ L + L YA+ P LSGGQ+ RVA+A +N P +L+LDEP LD++
Sbjct: 109 ERVAEALDLVQLEGYANRKP-SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167
Query: 134 ALAEAIKNYQGGV----ILVSHDE 153
+ +K Q + + V+HD+
Sbjct: 168 DMQLELKRLQKELGITFVFVTHDQ 191
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 4e-10
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL + +P+R LS GQ+ RVALA L L + ILDEP +D + + L +
Sbjct: 114 LAQVGLAGFED-VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
Query: 140 KNY--QGG-VILVSH 151
+ QGG VIL +H
Sbjct: 173 AQHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-10
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLM--KLFNLPYEKSR----RQLGMFGLPSYAHTIPI 94
R RIG Q LF D E + K F + ++ + R L G +
Sbjct: 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP 143
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ----GGVILVS 150
+SGGQ ++A+ + NPDI++LDEPT LD +S + +K+ Q +ILVS
Sbjct: 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS 203
Query: 151 HD 152
HD
Sbjct: 204 HD 205
|
Length = 286 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-10
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 75 KSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130
+SR L GL +P + LSGG++ RVALA PD+L DEPT NLD +
Sbjct: 122 QSRNGAKALLEQLGLGKRLDHLPAQ-LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180
Query: 131 SIDALAEAI----KNYQGGVILVSHDERL-------IRETDCELW 164
+ D +A+ + + + +ILV+HD +L +R + +L
Sbjct: 181 TGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225
|
Length = 228 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-10
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 47 FDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLS 98
F Q+ +L+P T E L ++ L +++ + L L YA P+ LS
Sbjct: 88 FQQY---NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH-LS 143
Query: 99 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVI---LVSHDERL 155
GGQ+ RVA+A + P +L+ DEPT LD E + IK I +V+H+ +
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203
Query: 156 IRETDCELWALEKKNI 171
R+T + +E +I
Sbjct: 204 ARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-10
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
EK + L GL I +LSGG++ RVALA L P +++ DEPT +LD ++ D
Sbjct: 113 EKKKEALEKVGLNLKLKQ-KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRD 171
Query: 134 ALAEAIK--NYQGG-VILVSHD 152
+ + + N +G +I+V+HD
Sbjct: 172 EVLDLLLELNDEGKTIIIVTHD 193
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 5e-10
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 37 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD 96
++S R IG Q + L P T E LM +R
Sbjct: 77 KRSFRKIIGYVPQD--DILHPTLTVRETLM-----------------------FAAKLRG 111
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 150
LSGG++ RV++A ++NP +L LDEPT+ LD S + ++ G I+ S
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 5e-10
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGGVILVS 150
RDLSGG+K RV LA P + + DEPT LD ++ +AL EA+K ++L S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 151 HDERLIRE-TDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 191
H +I + +D +W LE I++ G D+ + + E
Sbjct: 227 HWPEVIEDLSDKAIW-LENGEIKE-EGTPDEVVAVFMEGVSE 266
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-10
Identities = 51/166 (30%), Positives = 71/166 (42%), Gaps = 37/166 (22%)
Query: 11 AVLQGLRNPLSFIKPKGELTPNKGELRKSP----RLRIGKFDQHSGEHLF---------- 56
A L GL +PL +GE+T + + R R+ Q + HLF
Sbjct: 379 ATLAGLLDPL-----QGEVTLDGVPVSSLDQDEVRRRVSVCAQDA--HLFDTTVRENLRL 431
Query: 57 --PDDTPCEYLMKLFNLPYEKSRRQLGMF--GLPSYAHTIPIRD---LSGGQKARVALAE 109
PD T E L R L + LP T+ LSGG++ R+ALA
Sbjct: 432 ARPDATDEELWAAL-------ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALAR 484
Query: 110 LTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDE 153
L + IL+LDEPT +LD E+ D L E + G V+L++H
Sbjct: 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-10
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 24/128 (18%)
Query: 54 HLFPDDTPCEYLM----------KLFNLP---------YEKSRRQLGMFGLPSYAHTIPI 94
LFP T E + L P E++R L GL A P
Sbjct: 89 RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-PA 147
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG--VILVS 150
+LS GQ+ R+ +A P +L+LDEP L+ E + LAE I+ +GG ++L+
Sbjct: 148 GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIE 207
Query: 151 HDERLIRE 158
HD +L+
Sbjct: 208 HDMKLVMG 215
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-10
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHD 152
+LSGGQ RVA+A + P+IL LDEP LD E + + K+YQ VILV+H+
Sbjct: 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204
Query: 153 ERLIRETDCELWALEKKNIRK 173
+ E ++ LE + K
Sbjct: 205 MDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 72 PYEKSRR-----QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126
P E R L + L A P LSGGQ+ RVALA P +L+LDEP
Sbjct: 109 PSEAEIRARVEELLRLVQLEGLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGA 167
Query: 127 LDI----ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 173
LD E L + + V+HD+ E + L + I +
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218
|
Length = 345 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-09
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGG+K RVA+A L NP IL+LDE T+ LD + + A+++ G I+++H
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLS 197
Query: 155 LIRETD 160
I D
Sbjct: 198 TIVNAD 203
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-09
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-GVILVSH 151
LS G++ V +A N +LILDEPT L ++ L + I+ QG VI +SH
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-09
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154
+ SGG + R+ALA PD+L+LDEPTN+LD+ ++ L + + I+VSH
Sbjct: 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402
Query: 155 LIRETDCELWALEKKNIRKFNGDFDDY 181
+ ++ L + + + GD+D +
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDYDTF 429
|
Length = 718 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 42 LRIGKFDQHSGEHLFPDDTP-CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 100
LR + + P+ + +L L E R + SGG
Sbjct: 102 LRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE-------------GFSGG 148
Query: 101 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHDERL 155
+K R + +L L P + ILDEP + LDI+++ +AE I + GV++++H +RL
Sbjct: 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-09
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130
I LSGG + RV +A+ + +P ILI+DEPT LD E
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-09
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 34/153 (22%)
Query: 27 GELTPNKGELR--------KSP----RLRIGKFDQHSGEHLFPDDTPCEYLM------KL 68
G P+ GE+R KSP RL IG QH L P T E ++ K
Sbjct: 52 GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF--MLVPTLTVAENIILGLEPSKG 109
Query: 69 FNLPYEKSR-------RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
+ ++R + G+ + A + DLS G++ RV + + +LILD
Sbjct: 110 GLIDRRQARARIKELSERYGLP-VDPDAK---VADLSVGEQQRVEILKALYRGARLLILD 165
Query: 122 EPTNNLDIESIDALAEAIKNY--QG-GVILVSH 151
EPT L + D L E ++ +G +I ++H
Sbjct: 166 EPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198
|
Length = 501 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 150
+ S G + +VA+A +++P +L+LDEPT LD+ + AL E I+ G IL S
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 16 LRNPLSFIKP-KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74
LR + + P G++T + + + P K GE +K F
Sbjct: 45 LRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG 104
Query: 75 KSRRQLG--------MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126
SR+++ L Y + + S G K +VA+A +++P IL+LDEPT+
Sbjct: 105 LSRKEIKARIAELSKRLQLLEYLDR-RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSG 163
Query: 127 LDIESIDALAEAI---KNYQGGVILVSHD 152
LDI + + I KN VI SH
Sbjct: 164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192
|
Length = 245 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 65 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 124
L++L +P E +R L +Y H +LSGGQ+ RV +A N PD+LI DEPT
Sbjct: 138 LLELVGIP-EPEKR------LDAYPH-----ELSGGQRQRVMIAMALANEPDLLIADEPT 185
Query: 125 NNLD----IESIDALAEAIKNYQGGVILVSHDERLIRE 158
LD + +D L E ++ ++HD ++R+
Sbjct: 186 TALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK 223
|
Length = 534 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 76 SRRQ--------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
SR + L GL A +R+L+GG + RV +A L+ P +L+LDEPT L
Sbjct: 105 SRAEARARIAELLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163
Query: 128 DIESIDALAEAIKNYQGGVILVSHDERLIRETD-CELWA 165
D S A + +H L R+ LWA
Sbjct: 164 DPASRAA-------------ITAHVRALARDQGLSVLWA 189
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-09
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L F LP T I +LSGG+K R+AL P IL+LDE T+ LD + + E I
Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 140 KNY----QGGVILVSHD 152
Y V+ ++HD
Sbjct: 177 HRYVREQNVAVLWITHD 193
|
Length = 223 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-09
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL Y T+ +R LS GQK R+ALA L L+ + +LDEP NLD+E I + I
Sbjct: 122 LAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
Query: 140 KNY---QGGVILVSH 151
+ G ++ +H
Sbjct: 181 SAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156
LSGGQK R+A+A + P +LILDE T+ LD E L E+ V+L++H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV 677
Query: 157 RETD 160
D
Sbjct: 678 ERAD 681
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-09
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 55 LFPDDTPCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 107
LFP T E + +K+ +P + L + L +A P + LSGGQ+ RVAL
Sbjct: 53 LFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-LSGGQQQRVAL 111
Query: 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHDER 154
A + P IL+LDEP + LD + D + +K Q + + V+HD+
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
LSGG++ RVA+A + NP IL+LDEP + LD+ + + L + K + V+ V+
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 151 HD 152
HD
Sbjct: 188 HD 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-09
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A + NP ILI DE T+ LD ES + ++ G VI+++H
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS 653
Query: 155 LIRETDCELWALEKKNI 171
+R D + LEK I
Sbjct: 654 TVRACD-RIIVLEKGQI 669
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-09
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG----GVILVSHD 152
LSGGQK RVA+A + NP +LILDE T+ LD ES + +A+ Y V++++H
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL--YDWPERRTVLVIAHR 208
Query: 153 ERLIRETD 160
+ D
Sbjct: 209 LSTVERAD 216
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 7e-09
Identities = 34/85 (40%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGVIL 148
P++ S G KAR+A A T PDIL++DE D L E +K VIL
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVIL 197
Query: 149 VSHDERLIRET-DCELWALEKKNIR 172
VSHD I+ D L LEK IR
Sbjct: 198 VSHDPSSIKRLCDRALV-LEKGKIR 221
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 7e-09
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
++R L GL T + DLS Q+ V +A + +LILDEPT L ++
Sbjct: 123 RRRARELLARLGLDIDPDT-LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181
Query: 133 DALAEAIKNY--QG-GVILVSH 151
+ L + I+ QG +I +SH
Sbjct: 182 ERLFDLIRRLKAQGVAIIYISH 203
|
Length = 500 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-09
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 91 TIPIRDLSGGQKA------RVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY 142
PI+ LSGG++ R+AL++L ++L LDEP LD E ++ LAE ++
Sbjct: 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEEL 869
Query: 143 QGG---VILVSHDERLI 156
+I++SH E L
Sbjct: 870 LSDGRQIIIISHVEELK 886
|
Length = 908 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-09
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
RQ+GM + + P R LSGGQK RVA+A + PDI+ILDE T+ LD + E
Sbjct: 126 RQVGM---EDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE 181
Query: 138 AIK--NYQGG--VILVSHD 152
++ Q G V+ ++HD
Sbjct: 182 TVRQLKEQKGITVLSITHD 200
|
Length = 279 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 9e-09
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 14/130 (10%)
Query: 34 GELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLP 86
ELR+ R +I Q L P T + + M+L + E+ R + L GL
Sbjct: 98 AELREVRRKKIAMVFQSFA--LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE 155
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNY 142
+YAH+ P +LSGG + RV LA NPDIL++DE + LD E D L + +
Sbjct: 156 NYAHSYP-DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 143 QGGVILVSHD 152
Q ++ +SHD
Sbjct: 215 QRTIVFISHD 224
|
Length = 400 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-09
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVIL 148
P+R LS GQ+ R LA L+ P +L LDEPT LD+ + + E +K Y Q V+L
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 149 VSHD 152
+H
Sbjct: 213 TTHI 216
|
Length = 325 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 71 LPYE--KSRRQ--LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126
+P+E K R L + G+ + P R LSGGQK RVA+A P I+ILDE T+
Sbjct: 112 IPHEEMKERVNEALELVGMQDFKEREPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 127 LDIESIDALAEAIKN----YQGGVILVSHD 152
LD E L + IK YQ VI ++HD
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHD 200
|
Length = 279 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E+ L + GLP P + LSGGQ+ RVALA +P +L+LDEP + LD +
Sbjct: 113 ERVAELLDLVGLPGSERKYPGQ-LSGGQQQRVALARALATSPGLLLLDEPLSALDARVRE 171
Query: 134 ALAEAIKNYQG--GV--ILVSHDE 153
L I+ Q GV I+V+HD+
Sbjct: 172 HLRTEIRQLQRRLGVTTIMVTHDQ 195
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 64 YLMK-LFNLPYEKSRRQLG----MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118
YL+ +++LP + +++L + L T P+R LS GQ+ R +A L+ P+IL
Sbjct: 117 YLLAAIYDLPPARFKKRLDELSELLDLEELLDT-PVRQLSLGQRMRAEIAAALLHEPEIL 175
Query: 119 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 152
LDEPT LD+ + + + +K Y V+L SH
Sbjct: 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 97 LSGGQKARVALA----ELTLNNPDILILDEPTNNLDIESIDALAEAIK-NYQGG--VILV 149
LSGG+K ALA +L + ILDE LD ALAEAI + G VI++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 150 SHDERLIRETD 160
+H L D
Sbjct: 138 THLPELAELAD 148
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
R LSGG++ R+ALA L++ + +LDEPT LD + + + + G +++V+H
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR 532
Query: 153 ERLIRETD 160
R + D
Sbjct: 533 LRGLERMD 540
|
Length = 573 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + GL T +++LSGG+ RV++A NNP++L+LDEPT+ LD S + + E I
Sbjct: 115 LSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 140 KNYQGG----VILVSHD 152
+ VI ++H+
Sbjct: 175 VKLKNKMNLTVIWITHN 191
|
Length = 241 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQ------LGMFGLP--SYAHT 91
R +IG Q G LFP T E + + L ++K R + L + GL YA
Sbjct: 74 RRKIGYVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR 131
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VI 147
P +LSGGQ+ RV +A +P IL++DEP LD + L E IK Q ++
Sbjct: 132 YP-HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIV 190
Query: 148 LVSHDE 153
V+HD
Sbjct: 191 FVTHDI 196
|
Length = 309 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-08
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 93 PIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--V 146
PI D LS GQ R+ALA L +L+LDEPT +LD S + +A+
Sbjct: 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTT 537
Query: 147 ILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDD 180
++V+H +L ++W ++ I + GD+ +
Sbjct: 538 LMVTH--QLEDLAQWDQIWVMQDGQIVQ-QGDYAE 569
|
Length = 588 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-08
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 91 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGV 146
P++ S G AR+A + T PDIL+LDE D ++ L E ++ +
Sbjct: 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTI 200
Query: 147 ILVSHDERLIRET-DCELWALEKKNIRKFNGDFDD 180
+LVSHD I++ D +W LE IR G ++
Sbjct: 201 VLVSHDLGAIKQYCDRAIW-LEHGQIR-MEGSPEE 233
|
Length = 249 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-GVILV 149
+ S G K R+ +A LN+P +LILDEPTN LD I L E I+++ QG VIL
Sbjct: 121 KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILS 180
Query: 150 SH 151
SH
Sbjct: 181 SH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-08
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 12/80 (15%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--- 140
GL A PI+ LSGG++ RV +A +N P +L+ DEPT NLD DAL+E I
Sbjct: 126 GLLDKAKNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEGILRLF 180
Query: 141 ---NYQG-GVILVSHDERLI 156
N G V++ +HD LI
Sbjct: 181 EEFNRVGVTVLMATHDIGLI 200
|
Length = 222 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L M GL +P LSGG+K RVA+A + P +L+LDEPT LD + + L + +
Sbjct: 122 LHMLGLEELRDRVP-HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180
Query: 140 ----KNYQGGVILVSHDERLIRETDCELWALEKKNI 171
+ Y VI +H L+ E ++ ++K I
Sbjct: 181 NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216
|
Length = 277 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-08
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQLGMF----GLPSYAHTIP 93
R R+G Q ++L PD T E L+ + F L +R + L + A
Sbjct: 79 RQRVGVVPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA-K 135
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ +LSGG K R+ LA +N+PD+L+LDEPT LD
Sbjct: 136 VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 93 PIRDLSGGQKARVALAELTL-----NNPD--ILILDEPTNNLDIESIDALAEAIKNY--Q 143
+ LSGG+ RV LA + L NP +L+LDEP N+LD+ AL + Q
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 144 GGVILVS-HD 152
G +++S HD
Sbjct: 183 GIAVVMSSHD 192
|
Length = 248 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDE 153
+LS G++ +A+A L +P ILILDE T+N+D E+ + EA++ G I+++H
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRL 198
Query: 154 RLIRETD 160
I+ D
Sbjct: 199 STIKNAD 205
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 4e-08
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----- 128
E+ L + GL A +P LSGG + R+A+A PD+L+LDEP + LD
Sbjct: 116 ERVADALKLVGLGDAAAHLP-AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174
Query: 129 --IESIDALAEAIKNYQGGVILVSHDE 153
E I AL E + ++ V+HD+
Sbjct: 175 NMREEIAALHEELPELT--ILCVTHDQ 199
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-08
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A ++NP ILI DE T+ LD ES A+ + + G VI+++H
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 155 LIRETDCELWALEKKNI 171
++ D + +EK I
Sbjct: 199 TVKNAD-RIIVMEKGRI 214
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-08
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 64 YLMKLFNLPYEKSRRQLGM----FGLPSYAHTIPIRD-----LSGGQKARVALAELTLNN 114
+ LP + S L A T I +SGG++ RV++A L +
Sbjct: 103 TYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWD 161
Query: 115 PDILILDEPTNNLD 128
P +LILDEPT+ LD
Sbjct: 162 PKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----I 129
+ + + L GL A+ P LSGGQK RVALA ++ P +L+LDEP LD I
Sbjct: 112 DAALQALAAVGLADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
Query: 130 ESIDALAEAIKNYQGGVILVSHD 152
E D + + + V+LV+HD
Sbjct: 171 EMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-08
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 68 LFNLPYEKSRRQ------LGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 120
+ + R+ L + GLP + P +LSGGQ+ RVA+A P +LIL
Sbjct: 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALALEPKLLIL 453
Query: 121 DEPTNNLD----IESIDALAEAIKNYQGGVILVSHDERLIRET 159
DEP + LD + ++ L + + + +SHD ++R
Sbjct: 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI 496
|
Length = 539 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-08
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
+ GL + P LSGGQ+ RVALA + P + +LDEP +NLD + + IK
Sbjct: 120 LLGLEHLLNRKP-LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178
Query: 142 YQG----GVILVSHD 152
I V+HD
Sbjct: 179 LHERLGTTTIYVTHD 193
|
Length = 338 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-08
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM--KLFNLPYEKSRRQ----- 79
G + N + K R G Q + L+P T E L+ L LP ++++
Sbjct: 125 GTILANNRKPTKQILKRTGFVTQD--DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVA 182
Query: 80 ---LGMFGLPSYAHTIP----IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ GL +TI IR +SGG++ RV++A L NP +LILDEPT+ LD
Sbjct: 183 ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLP--SYAHT 91
R +IG Q G LFP T E + KL P EK R + L + GL +A
Sbjct: 74 RRKIGYVIQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADR 131
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ----GGVI 147
P +LSGGQ+ RV +A +P +L++DEP LD + D L E K Q ++
Sbjct: 132 YP-HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIV 190
Query: 148 LVSHD 152
V+HD
Sbjct: 191 FVTHD 195
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
++ + L G+ + + P LSGGQK RVA+A + P+I++LDEPT+ LD
Sbjct: 116 KRVKEALKAVGMEGFENKPP-HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 134 ALAEAIK--NYQGGVILVS-HDERLI 156
+ + + N +G I++S HD L+
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLV 200
|
Length = 275 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-08
Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 33/151 (21%)
Query: 26 KGELTPNKGELRKSPR----LRIGKFDQHSGEHLFPDDTPCEYL--MKLFNLPY------ 73
G + +L R R+ +Q S P + L +P+
Sbjct: 55 AGTVDLAGVDLHGLSRRARARRVALVEQDS-----DTAVPLTVRDVVALGRIPHRSLWAG 109
Query: 74 ------EKSRRQLGMFGLPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPT 124
R L L A RD LSGG++ RV +A P +L+LDEPT
Sbjct: 110 DSPHDAAVVDRALARTELSHLAD----RDMSTLSGGERQRVHVARALAQEPKLLLLDEPT 165
Query: 125 NNLDIESIDALAEAIKNYQGG---VILVSHD 152
N+LD+ + ++ V+ HD
Sbjct: 166 NHLDVRAQLETLALVRELAATGVTVVAALHD 196
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-08
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 74 EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---- 128
+K+R + + GLP P +LSGGQ RVA+A + P++L+LDEPT LD
Sbjct: 123 QKAREMIELVGLPEELLARSPF-ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGR 181
Query: 129 IESIDALAEAIKNYQGGVILVSH 151
E ++ + K +LV+H
Sbjct: 182 KEMMEMFYKLHKEKGLTTVLVTH 204
|
Length = 290 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 74 EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIES 131
E+ L GLP + + P +LSGGQ+ R+ +A L LN P +++ DEP + LD+ S
Sbjct: 87 ERVLELLEKVGLPEEFLYRYP-HELSGGQRQRIGIARALALN-PKLIVADEPVSALDV-S 143
Query: 132 IDA-----LAEAIKNYQGGVILVSHDERLIR 157
+ A L + + + +SHD ++R
Sbjct: 144 VQAQILNLLKDLQEELGLTYLFISHDLSVVR 174
|
Length = 268 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-07
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 97 LSGGQKARV----ALAELTLNNPD--ILILDEPTNNLDI----ESIDALAEAIKNYQGGV 146
LSGG++ RV LA+L + L+LDEPT+ LD+ + + V
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 147 ILVSHD 152
I+V HD
Sbjct: 195 IVVLHD 200
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 68 LFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
LF L ++ +++ L GL A+ LSGGQ+ RVA+A + P +++ DEP
Sbjct: 113 LFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSGGQQQRVAIARALMQQPKLILADEP 171
Query: 124 TNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRE 158
+LD S +D L + VI+ H L RE
Sbjct: 172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE 210
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
LSGGQ+ R+A+A L + ILILDE T+ LD ES A+ A+ Q
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
|
Length = 582 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
L F LP T I +LSGG+K R++L P +L+LDE T+ LD +
Sbjct: 115 AIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
Query: 134 ALAEAIKNY----QGGVILVSHDERLIRETD 160
+ E I Y V+ V+HD+ I D
Sbjct: 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 55 LFPDDTPCEYLMKL--FNLPYEKSRRQ----LGMFG---------LPSYAHTIPIRDLSG 99
L+P T + L + LP E +R + L M G L Y LS
Sbjct: 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE-----LSE 430
Query: 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERL 155
G++ RVALA++ + P I+ILDEPT +D + + +I + + I+VSHD
Sbjct: 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF 490
Query: 156 IRE 158
+ +
Sbjct: 491 VLD 493
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQGGVILV 149
LSGG++ R+A+A L N IL+LDE T+ LD+E+ IDAL + + ++
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTF-----II 526
Query: 150 SHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184
+H +R D L+ + + I K G F + +K
Sbjct: 527 AHRLSTVRNADLVLFLDQGRLIEK--GSFQELIQK 559
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHD 152
LSGGQK R+++A + NP ILILDE T++LD +S + + I N +G I+++H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 153 ERLIR 157
IR
Sbjct: 640 LSTIR 644
|
Length = 1466 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R LSGG++ R+A+A L +P ILILDE T+ LD+E+ AL E +K +I +
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFII--A 527
Query: 151 HDERL--IRETD 160
H RL +R D
Sbjct: 528 H--RLSTVRNAD 537
|
Length = 588 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 69 FNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 124
+PY++ R+ L + A P LSGGQK RVA+A + NP ++ILDE T
Sbjct: 112 HAVPYDEMHRRVSEALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSVIILDEAT 170
Query: 125 NNLDIESIDALAEAIKNYQGG----VILVSHD 152
+ LD ++ L + ++ + +I ++HD
Sbjct: 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-07
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 74 EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
+ ++ L GL SY P LSGGQK RVA+A + P+ILI DEPT LD +
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 133 DALAEAI---KNYQGGVILVSHDERLIRETDCELWALEKKNIRK 173
+ + I K V +++H + E E+ ++K I K
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256
|
Length = 320 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-YQGG--VILVSH 151
+LSGGQ RVA+A + P IL+LDEPT LD + L K +Q G ++LV+H
Sbjct: 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154
+LSGGQ+ R+ +A + NP ILILDE T+ LD E+ + + ++ I+V+H R
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH--R 671
Query: 155 L--IRETD 160
L IR+ D
Sbjct: 672 LSTIRDCD 679
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-07
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKNY-QGG--VILVSHD 152
LSGGQK R++LA ++ DI +LD+P + +D + E I ILV+H
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187
Query: 153 ERLIRETD 160
+L+ D
Sbjct: 188 LQLLPHAD 195
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
I LS G + RV LA+ +++P +LILDEPT LD + + IKN
Sbjct: 131 IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-07
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHDER 154
SGG+K R + ++ L P + ILDE + LDI+++ +AE I + ++++H +R
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205
Query: 155 LIR 157
L+
Sbjct: 206 LLN 208
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-07
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 15/145 (10%)
Query: 26 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD----DTPCEYLMKLFNLPYEKSRRQ-- 79
G L P + + R +IG Q +LFP D E + + + ++ ++
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM 128
Query: 80 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
L M GL A +P + LSGGQ+ RVA+A P +++ DE T+ LD E + +
Sbjct: 129 ELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 138 AIKN----YQGGVILVSHDERLIRE 158
I+ + ++LV+H+ RE
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFARE 212
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----I 129
++S +++GM+ +A + LSGGQK RVA+A + P+ +I DEPT LD
Sbjct: 126 DESLKKVGMYEYRRHAPHL----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181
Query: 130 ESIDALAEAIKNYQGGVILVSH 151
E ++ + E K Y +IL++H
Sbjct: 182 EVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVS 150
+ LSGGQ+ RVAL + P + ++DEP +NLD ++ L + I V+
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188
Query: 151 HDE 153
HD+
Sbjct: 189 HDQ 191
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-07
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 97 LSGGQKARVALA-ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIK---NYQGGVILVSH 151
LSGG+ RV LA EL P L ILDEP+ L + I+ L E IK + VIL+ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 152 DERLIRETD 160
+ ++ D
Sbjct: 148 NLDVLSSAD 156
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-07
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVS 150
LSGGQ+ R+ +A P++L++DEPT+ LD S + E I K Y +++V+
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYT--IVIVT 205
Query: 151 H 151
H
Sbjct: 206 H 206
|
Length = 253 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQG- 144
I LSGG + + LA+ L NP ILILDEPT +D+ + I+ L + QG
Sbjct: 402 AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-----QGV 456
Query: 145 GVILVS 150
+I++S
Sbjct: 457 AIIVIS 462
|
Length = 506 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 47 FDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLS 98
F Q+ +L+P T + L ++ L +++ + L L YA P+ LS
Sbjct: 88 FQQY---NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH-LS 143
Query: 99 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-GV--ILVSHDERL 155
GGQ+ RVA+A + P +L+ DEPT LD E + I+ G+ ++V+H+ +
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203
Query: 156 IRETDCELWALEKKNI 171
R+T + +E +I
Sbjct: 204 ARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
GL H P LSGGQ+ARVAL L P L+LDEP + LD+ D + + +
Sbjct: 123 GLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181
Query: 144 GG----VILVSHD 152
+ V+HD
Sbjct: 182 RAAGIPTVQVTHD 194
|
Length = 213 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-07
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE--- 130
E++ + L G+ A P LSGGQ+ RVA+A P++++ DEPT+ LD E
Sbjct: 131 ERAEKYLAKVGIAEKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189
Query: 131 ----SIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK 168
+ LAE + +++V+H+ R+ + L +
Sbjct: 190 EVLKVMQDLAEEGRT----MVVVTHEMGFARDVSSHVIFLHQ 227
|
Length = 256 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-07
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R SGG++ R+ALA + L + I++LDEPT LD + + + E +K+ +I ++
Sbjct: 97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT--LIWIT 154
Query: 151 H 151
H
Sbjct: 155 H 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-07
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 75 KSRRQ-----LGMFGLPSYAHTIPI--RDLSGGQKARVALAELTLNNPDILILDEPTNNL 127
K+RRQ L G+P A + + LSGG RV +A P +LI DEPT L
Sbjct: 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL 184
Query: 128 DI----ESIDALAEAIKNYQGGVILVSHDERLIRE 158
D+ + I+ L E + ++L++HD L+ E
Sbjct: 185 DVTIQAQIIELLLELQQKENMALVLITHDLALVAE 219
|
Length = 326 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE--- 130
++R L GL + P R LSGGQ+ RVA+A P++++ DEPT+ LD E
Sbjct: 123 ARARELLAKVGLAGKETSYP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181
Query: 131 ----SIDALAEAIKNYQGGVILVSHDERLIRE 158
+I LA+ + +++V+H+ R+
Sbjct: 182 EVLNTIRQLAQEKRT----MVIVTHEMSFARD 209
|
Length = 250 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVIL 148
LSGG+K RVA+ L++P +L++DEP LD E + L + ++
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 149 VSHD 152
VSH
Sbjct: 188 VSHS 191
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-07
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 61 PCEYLMKLFNLPYEKSRRQ------LGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLN 113
P +L L ++S ++ L M GL S A +P R LSGGQ R+ +A
Sbjct: 114 PLRHLTSL-----DESEQKARIAELLDMVGLRSEDADKLP-RQLSGGQLQRINIARALAV 167
Query: 114 NPDILILDEPTNNLDI---ESIDALAEAIKNYQGGV--ILVSHDERLIRETDCELWALEK 168
P +++LDE +NLD+ I L ++ G + ++HD RL++ + ++K
Sbjct: 168 KPKLIVLDEAVSNLDMVLQAVILELLRKLQQ-AFGTAYLFITHDLRLVQSFCQRVAVMDK 226
Query: 169 KNI 171
I
Sbjct: 227 GQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
LSGGQ+ R+A+A L + IL+LDE T+ LD ES + +A+
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN-YQGGVILVSHDE 153
SGGQ+ R+A+A + P ++ILDEPT++LD I AL ++++ +Q + +SHD
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
Query: 154 RLIR 157
++R
Sbjct: 487 HVVR 490
|
Length = 529 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-07
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 84 GLPSYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDAL 135
LP T PI + LSGGQ+ R+A+A L + ILILDE T+ LD ES AL
Sbjct: 454 KLPLGLDT-PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512
Query: 136 AEAIKNYQGGVI 147
++ VI
Sbjct: 513 ERLMQGRTTLVI 524
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-07
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 93 PIRDLSGG--QKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQ 143
PI LSGG QK V LA +P +LILDEPT +D+ + I LA K
Sbjct: 398 PIGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK--- 452
Query: 144 GGVILVS 150
++++S
Sbjct: 453 -AILMIS 458
|
Length = 500 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 8e-07
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149
+ +LSGG+ RVA+A + DI +LDEP+ LD+E ++ I+ + + +V
Sbjct: 113 VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV 172
Query: 150 SHD 152
HD
Sbjct: 173 EHD 175
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-07
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 8/66 (12%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R LSGG++ R+ +A L++ +L+LDEPT LD E+ ++ LAE +N V++++
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKT--VLMIT 531
Query: 151 HDERLI 156
H RL
Sbjct: 532 H--RLT 535
|
Length = 574 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 93 PIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVIL 148
P R LSGG + ++ LA EL PD+LI +PT LD+ +I+ + E + ++ V+L
Sbjct: 400 PARSLSGGNQQKLILARELARR-PDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL 458
Query: 149 VSHD 152
+S D
Sbjct: 459 ISED 462
|
Length = 501 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-06
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESIDALAEAIKNYQGG--VILV 149
I +LSGG+ RVA+A L + D DEPT+ LDI + ++ A I+ G V++V
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKYVLVV 267
Query: 150 SHD 152
HD
Sbjct: 268 EHD 270
|
Length = 590 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Query: 66 MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
++L N P ++ +R+ L + GL + P +LSGGQK RVA+A +NP +L+ D
Sbjct: 107 LELDNTPKDEIKRKVTELLALVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCD 165
Query: 122 EPTNNLDIESIDALAEAIK--NYQGG--VILVSHDERLIR 157
E T+ LD + ++ E +K N + G ++L++H+ +++
Sbjct: 166 EATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVK 205
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 94 IRDLSGGQKARVALAEL------TLNNPDILILDEPTNNLDI---ESIDALAEAIKNYQG 144
R LSGG++ RV LA + + + L LDEPT+ LDI LA + G
Sbjct: 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGG 192
Query: 145 GVILVSHD 152
V+ V HD
Sbjct: 193 AVLAVLHD 200
|
Length = 259 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILV 149
P+ +LSGGQ+ RV +A P +L+LDEP LD+ + + L E G +++
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 150 SHD 152
+HD
Sbjct: 170 THD 172
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGG+K RVA+A L NP ILILDE T+ LD + A+ A++ G ++++H
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459
Query: 155 LIRETD 160
I + D
Sbjct: 460 TIIDAD 465
|
Length = 497 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-06
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSH 151
DLSGG+ RVA+A L N + DEP+ LDIE A AI+ + ++V H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 152 D 152
D
Sbjct: 131 D 131
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHDE 153
SGGQ+ R+A+A + P++++LDEPT+ LD + +D L + + + + +SHD
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487
Query: 154 RLIR 157
++R
Sbjct: 488 AVVR 491
|
Length = 534 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ DLSGG K R+ LA +N+P +LILDEPT LD
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
+++ L GL P LSGGQ+ RV++A +N +++ DEPT LD S +
Sbjct: 123 LRAQELLQRLGLEDRVEYQP-SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181
Query: 134 ALAEAIK--NYQG-GVILVSHD-------ERLIRETDCEL 163
+ + +G VI+V+HD ER+I D E+
Sbjct: 182 EVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-- 131
E++ L +F L A P+ SGG + R+ +A ++ PD+L LDEPT LD +
Sbjct: 103 ERAEELLELFEL-GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR 161
Query: 132 -IDALAEAIKNYQGGVILVSHD 152
I A+K ++L +H
Sbjct: 162 AIWDYIRALKEEGVTILLTTHY 183
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
+ L + + P LS GQK RVA+A + +PD+++LDEP LD +
Sbjct: 117 RRVEEALKAVRMWDFRDKPPYH-LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQE 175
Query: 134 ALAEAIK--NYQGG-VILVSHDERLIRETDCELWA 165
L E + + QG VI+ +HD L E WA
Sbjct: 176 TLMEILDRLHNQGKTVIVATHDVDLAAE-----WA 205
|
Length = 274 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
K + L M L A P + LSGGQK RVALA P IL+LDEP LD
Sbjct: 116 KVTQLLEMVQLAHLADRYPAQ-LSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-06
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 77 RRQLGMF-GLPSYAHTIPIRDLSGG--QKARVALAELTLNNPDILILDEPTNNLDIESID 133
R++ G+ L + LSGG QK V LA +P +LILDEPT +D+ +
Sbjct: 84 RKREGLVLDLSVAENIALSSLLSGGNQQK--VVLARWLARDPRVLILDEPTRGVDVGAKA 141
Query: 134 ALAEAIKNY--QG-GVILVSHD 152
+ I+ G V+L+S +
Sbjct: 142 EIYRLIRELADAGKAVLLISSE 163
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSH 151
LSGGQ+ R+ +A P++L+LDEPT+ LD + + E I K Y +++V+H
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYT--IVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-06
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 73 YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
Y+K L + LP Y P +LSGGQK RVALA + + + L+LDEPT LD +
Sbjct: 127 YKKVPELLKLVQLPEDYVKRSPF-ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKG 185
Query: 132 ----IDALAEAIKNYQGGVILVSHD-ERLIRETD 160
I+ K Y+ +I+V+H+ ++++R D
Sbjct: 186 EEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD 219
|
Length = 289 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGG-VI 147
+ DLSGGQ+ R LA + + +++LDEPT LDI E + + E N QG V+
Sbjct: 135 RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL--NTQGKTVV 192
Query: 148 LVSHD 152
V HD
Sbjct: 193 TVLHD 197
|
Length = 255 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 54 HLFPDDTPCEYLM----KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARV 105
+LFP T E +M ++ E++ +Q L GL AH P +LSGGQ+ RV
Sbjct: 87 YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-SELSGGQQQRV 145
Query: 106 ALAELTLNNPDILILDEPTNNLDIE 130
A+A P +++ DEPT+ LD E
Sbjct: 146 AIARALAVKPKLMLFDEPTSALDPE 170
|
Length = 240 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVS 150
LSGG+K RVA+ L P++L++DEP +LD+ E + L ++ VS
Sbjct: 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVS 186
Query: 151 H 151
H
Sbjct: 187 H 187
|
Length = 352 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
L M L +A P LSGGQ+ RVA+A +N P +L+LDE + LD
Sbjct: 129 LRMVQLEEFAQRKP-HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-----AIKNYQGGVI 147
P LS G++ RV +A + +P++LILDEP LD+ + + L A ++
Sbjct: 168 PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALL 227
Query: 148 LVSH 151
V+H
Sbjct: 228 FVTH 231
|
Length = 257 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
++ L G+ P LS GQK RVA+A + + P +L+LDEPT LD +
Sbjct: 120 KRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 134 ALAEAIKNYQGG----VILVSHD 152
+ + + Q +I+ +HD
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHD 201
|
Length = 283 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHD 152
LSGGQ RV LA P +LILDE +NLD+ I L + + + + ++HD
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211
Query: 153 ERLIR 157
RL+
Sbjct: 212 LRLVE 216
|
Length = 268 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVIL 148
I LSGGQ+ ++L TL+ P IL+LDE T LD ++ A+ ++ ++ ++
Sbjct: 145 RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM 204
Query: 149 VSH 151
V+H
Sbjct: 205 VTH 207
|
Length = 263 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-06
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ + LSGG K R+ LA +N+P +LILDEPT LD
Sbjct: 131 VRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-06
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 22 FIKP-KGELTPN-KGELRKSPRLRIGK--FDQHSGEHLFPDDTPCEYL-------MKLFN 70
FI+P G + N + +P R F +++ LF T + + +KL
Sbjct: 47 FIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNA 103
Query: 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD-- 128
EK G+ Y +P LSGGQ+ RVALA + IL+LDEP + LD
Sbjct: 104 EQQEKVVDAAQQVGIADYLDRLP-EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
Query: 129 --IESIDALAEAIKNYQGGVILVSH 151
E + + + Q +++V+H
Sbjct: 163 LREEMLALVKQLCSERQRTLLMVTH 187
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 4e-06
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---E 130
E+ R++G++ P LSGGQ+ R+ +A P +L++DEPT+ +DI +
Sbjct: 131 EECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 131 SIDALAEAIKNYQGGVILVSHD 152
+I+ L +KN + +++VSH+
Sbjct: 191 AIEKLITELKN-EIAIVIVSHN 211
|
Length = 257 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 92 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
+PI LSGG + + LA++ L NP +LILDEPT +D+
Sbjct: 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-06
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESI 132
EK + + GL AH + + LSGG++ R +A L + L+LDEPT+ LDI +
Sbjct: 126 EKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184
Query: 133 DALA--EAIKNYQG-GVILVSHD 152
D LA + +G VI V HD
Sbjct: 185 DVLALVHRLSQERGLTVIAVLHD 207
|
Length = 265 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
++R L +P +P SGG++ RV +A + + IL+LDEPT +LD +
Sbjct: 126 RARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 133 DALAEAIKNY-QGGVILVS--HDE 153
+ E I G L+ HDE
Sbjct: 186 QVVVELIAEAKARGAALIGIFHDE 209
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVIL 148
P+ +LSGG+ RVA+A D+ +LDEP+ LD+E +A+ I+ N + ++
Sbjct: 452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALV 511
Query: 149 VSHD 152
V HD
Sbjct: 512 VDHD 515
|
Length = 591 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDALAEAIKNYQGGV--ILVS 150
+LSGGQKARV+LA N D+ +LD+P + LD E + + E G +L +
Sbjct: 782 NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV--VEECFLGALAGKTRVLAT 839
Query: 151 HDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAAEQDDDEDYE 210
H ++ D + AL + +F+G D+ TSL + AAE +++D +
Sbjct: 840 HQVHVVPRADY-VVALGDGRV-EFSGSSADFMR---TSLYATL------AAELKENKDSK 888
Query: 211 D 211
+
Sbjct: 889 E 889
|
Length = 1560 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-06
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136
R L G+ Y + P +LSGGQK RVA+A + P I+ILDE T+ LD + +
Sbjct: 125 RDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183
Query: 137 EAIKNYQG----GVILVSHD 152
+ I+ + VI ++HD
Sbjct: 184 KLIRKLKKKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-06
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--IES 131
++ QL + GL +A P +LSGG + RV LA IL++DEP + LD I +
Sbjct: 143 KRVDEQLELVGLAQWADRKP-GELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201
Query: 132 --IDALAEAIKNYQGGVILVSHD 152
D L E + ++ VSHD
Sbjct: 202 QLQDELLELQSKLKKTIVFVSHD 224
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQK RVA+A + NP+I+I DE T+ LD
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
|
Length = 271 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 6e-06
Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
R L GL Y H P + LSGGQ VALA + P+ LI DE T+ LD +S A+ E
Sbjct: 119 RALAEIGLEKYRHRSP-KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177
Query: 138 AIK 140
IK
Sbjct: 178 RIK 180
|
Length = 274 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 7e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVIL 148
++DLSGG+ RVA+A + D+ +LDEP+ +LD+E A+A+AI+ + ++
Sbjct: 450 NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509
Query: 149 VSHD 152
V HD
Sbjct: 510 VDHD 513
|
Length = 590 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-06
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---E 130
E + + L + GL H LSGG + RV +A P +L+LDEP LD E
Sbjct: 111 EIAHQMLALVGLEGAEHKYIW-QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTRE 169
Query: 131 SI-DALAEAIKNYQGGVILVSHD 152
+ + L + + V+L++HD
Sbjct: 170 QMQELLLDLWQETGKQVLLITHD 192
|
Length = 259 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 8e-06
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
+LSGGQ RVA+A + P++L+LDEPT LD ++ + L E+I V+LV+H
Sbjct: 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDYRE 183
+ + ++ LEK +I D ++E
Sbjct: 204 MDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-06
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 131
E++ L GL A+ LSGGQ+ RVA+A PD+++ DEP +LD ++
Sbjct: 123 KERALSALERVGLADKAYQ-RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 132 ---IDALAEAIKNYQGGVILVSHDERLIRE 158
+D L K VI+ H L ++
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQVDLAKK 211
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-06
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134
SGGQ+ R+A+A + +PD+++ DEP + LD+ S+ A
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDV-SVQA 191
|
Length = 327 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAI 139
GL + +P +LSGGQ+ RVALA + IL+LDEP + LD E + +++
Sbjct: 118 GLAGFLKRLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176
Query: 140 KNYQGGVILVSH 151
+ +++V+H
Sbjct: 177 DERKMTLLMVTH 188
|
Length = 231 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVS 150
+ LSGGQK R+A+A L P IL+LDE T++LD S + + I + + +I ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 151 HDERLIRETD 160
H I+ +D
Sbjct: 1417 HRIASIKRSD 1426
|
Length = 1466 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIK 140
L Y LSGG RV +A L P LI DEPT +LD+ + L E +
Sbjct: 119 LKKYPF-----QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 141 NYQGGVILVSHDERLIRETDCELWALEKKNI 171
+ G++L++HD ++ E+ ++ I
Sbjct: 174 LFGTGILLITHDLGVVARIADEVAVMDDGRI 204
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-05
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 94 IRDLSGGQKARVALAELTLN-----NPD--ILILDEPTNNLDI---ESIDALAEAIKNYQ 143
LSGG+ RV LA + L NP +L+LDEP N+LD+ ++D L A+
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG 182
Query: 144 GGVILVSHD-ERLIRETDCELWALEK 168
+++ SHD +R W L++
Sbjct: 183 LAIVMSSHDLNHTLRHAH-RAWLLKR 207
|
Length = 248 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + L P LSGGQ+ RVALA P +L+LDEP LD + L +
Sbjct: 115 LELVQLEGLGDRYP-NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173
Query: 140 KNYQGGV----ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183
+ V + V+HD+ E + + I + + Y
Sbjct: 174 RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD--------IESIDALAEAIKNYQGGV 146
+ LSGGQ+ RVA+ + P + +LDEP +NLD IE ++ K +
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE----ISRLHKRLGRTM 187
Query: 147 ILVSHDE 153
I V+HD+
Sbjct: 188 IYVTHDQ 194
|
Length = 369 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156
LSGG+K R+A+A L + P ILDE T+ + ++ + + + + VSH + L
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW 642
Query: 157 R 157
+
Sbjct: 643 K 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 26/109 (23%)
Query: 49 QHSGEHLFPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 106
+H+ E D ++LFN+ P S Q I LSGG + +VA
Sbjct: 367 KHADEQQAVSD-----FIRLFNIKTP---SMEQ-------------AIGLLSGGNQQKVA 405
Query: 107 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGG--VILVSHD 152
+A + P +LILDEPT +D+ + + + I + G +ILVS +
Sbjct: 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
|
Length = 501 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 67 KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122
+L+ +P + R + L GL A + ++ SGG + R+ +A ++ P++L LDE
Sbjct: 99 RLYGVPGAERRERIDELLDFVGLLEAADRL-VKTYSGGMRRRLEIARSLVHRPEVLFLDE 157
Query: 123 PTNNLDIESIDALAEAIK 140
PT LD ++ + E I+
Sbjct: 158 PTIGLDPQTRAHVWEYIE 175
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-------SIDALAEAIKNYQGGV 146
+ +LSGG+ RVA+A L + D+ DEP++ LDI I LAE K V
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKY----V 266
Query: 147 ILVSHD 152
I+V HD
Sbjct: 267 IVVEHD 272
|
Length = 591 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVS 150
P R LSGGQ+ + LA NP++L+LDEPT+ LD + + + E I++ VI+V+
Sbjct: 161 PFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219
Query: 151 HD 152
H+
Sbjct: 220 HN 221
|
Length = 276 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 2e-05
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 91 TIPIRDLSGGQKARVALAEL---TLNNPDILILDEPTNNLDIESIDALAEAIK---NYQG 144
+ I+ +S G K +AL L +L++DEP N L + + L E +K
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGA 243
Query: 145 GVILVSHDERLIR 157
+I +H L+
Sbjct: 244 QLIFTTHSPLLLD 256
|
Length = 256 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---E 130
E + + L GL I LSGGQ+ RV +A NP +L+LDEP LD E
Sbjct: 107 EIAHQMLKKVGLEGAEKR-YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRE 165
Query: 131 SIDALAEAIKNYQGG-VILVSHD 152
+ L + G V+L++HD
Sbjct: 166 QMQTLLLKLWQETGKQVLLITHD 188
|
Length = 255 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
LSGGQ+ R+ +A NPD+L++DEPT+ LD S + E I
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198
|
Length = 259 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSHDER 154
SGG+K R + ++ L + ++ ILDE + LDI+++ +AE I + +IL++H +R
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212
Query: 155 LI 156
L+
Sbjct: 213 LL 214
|
Length = 252 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGG+K RVA+ L P++L++DEP +LD+
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
|
Length = 352 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD------IESIDALAEAIKNYQGGVILV 149
+LSGGQ+ R+ +A P IL++DEPT N+D IE + L E K Y ++LV
Sbjct: 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL--LFELKKEYT--IVLV 204
Query: 150 SH 151
+H
Sbjct: 205 TH 206
|
Length = 253 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILV 149
P LSGGQ+ R+ +A P++L+ DEPT NLD E+ I++L +K ++LV
Sbjct: 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLV 201
Query: 150 SH 151
+H
Sbjct: 202 TH 203
|
Length = 250 |
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-05
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 18/75 (24%)
Query: 98 SGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----------KN 141
S GQK R+ALAE N I+ LDEPT NLD E+I++LA A+ +N
Sbjct: 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1260
Query: 142 YQGGVILVSHDERLI 156
+Q +++++HDE +
Sbjct: 1261 FQ--LLVITHDEDFV 1273
|
All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
K L + L A P LSGGQ+ RVALA P +L+LDEP LD
Sbjct: 115 AKVHELLKLVQLDWLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136
+ + GL A LSGG K RVA+A P +L+LDEP LD + L
Sbjct: 96 EEHIALVGLTEAADK-RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154
Query: 137 EAIKN----YQGGVILVSHD 152
E + ++ V++V+HD
Sbjct: 155 EELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-05
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVILVSHD 152
+LSGGQ+ R+ +A +P+IL+ DEPT+ LD SI+ L +KN + +++V+H+
Sbjct: 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
+SGGQK R+ALA L + +LILDE T+NLD
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IE 130
E+S ++ ++ P LSGGQ+ R+ +A P++++LDEPT+ LD +
Sbjct: 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 131 SIDALAEAIKNYQGGVILVSHDERLIRETD 160
I+ L E + VI+ + + IR D
Sbjct: 184 RIEKLLEELSENYTIVIVTHNIGQAIRIAD 213
|
Length = 250 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 72 PYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
+K R + L G+ +AH + LSGGQ+ RVA+A + +++ DEP +LD
Sbjct: 127 REQKQRALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDP 185
Query: 130 ESIDALAEAIK--NYQGGVILV 149
ES + + ++ N G+ +V
Sbjct: 186 ESARIVMDTLRDINQNDGITVV 207
|
Length = 262 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-05
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILV 149
PI+ LS GQK RVA+A + L+LDEPT LD + I+ QG VI+
Sbjct: 133 PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIIS 192
Query: 150 SHDERLIRETDCELWALEKKNI 171
SHD LI E ++ L + I
Sbjct: 193 SHDIDLIYEISDAVYVLRQGQI 214
|
Length = 271 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-05
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 94 IRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141
+R LS Q+ R+ + EL P IL LDEPT+ LD ++ + +K
Sbjct: 106 LRGLSVEQRKRLTIGVELA-AKPSILFLDEPTSGLDSQAAYNIVRFLKK 153
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-05
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
LSGGQ+ R+ +A P+IL+LDEPT+ LD ++ + + I+ +G +++V+H+
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240
|
Length = 286 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L GL LS GQK + + L +P +L+LDEP + + AE +
Sbjct: 132 LATIGLGDERD-RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190
Query: 140 KNYQGG--VILVSHDERLIRE 158
K+ G +++V HD +RE
Sbjct: 191 KSLAGKHSILVVEHDMGFVRE 211
|
Length = 249 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 12/64 (18%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLD------IES-IDALAEAIKNYQGGVIL 148
DLSGGQ+ R+ +A +P+++++DEP + LD IE I+ LAE V++
Sbjct: 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYT-----VVI 234
Query: 149 VSHD 152
V+H+
Sbjct: 235 VTHN 238
|
Length = 285 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVS 150
+LSGG++ RVALA + + + +L+LDEP LD E +D + + + V++V+
Sbjct: 127 GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVT 186
Query: 151 H 151
H
Sbjct: 187 H 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQK RVA+A +NP +L+ DE T+ LD
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 74 EKSRRQLGMFGLPSYAHT-IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 131
E+ RR L + + H R LSGG + +V +A+ +P +LI+DEPT +D+ +
Sbjct: 384 ERYRRALNI----KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR 439
Query: 132 --IDALAEAIKNYQGGVILVSHD 152
I L +I V+ +S D
Sbjct: 440 NDIYQLIRSIAAQNVAVLFISSD 462
|
Length = 510 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-05
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122
E L++ F++ R+ LSGG++ RV +A NP L+LDE
Sbjct: 115 EELLEEFHI--THLRKSKASS-------------LSGGERRRVEIARALATNPKFLLLDE 159
Query: 123 PTNNLD---IESIDALAEAIKNYQGGVILVSHDERLIRET 159
P +D ++ I + + +K+ GV++ H+ +RET
Sbjct: 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN---VRET 196
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-05
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI- 132
E++ + L G+ A LSGGQ+ RV++A P++L+ DEPT+ LD E +
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 133 ------DALAEAIKNYQGGVILVSHDERLIR 157
LAE K +++V+H+ R
Sbjct: 190 EVLRIMQQLAEEGKT----MVVVTHEMGFAR 216
|
Length = 257 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ RV +A + +P I++LDEPT+ LD
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA-----LAEAIKNYQGGVILVSH 151
LSGG++ RV +A L P++LI DEPT LD+ S+ A L E + G++ ++H
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQAQILQLLRELQQELNMGLLFITH 215
Query: 152 DERLIR 157
+ ++R
Sbjct: 216 NLSIVR 221
|
Length = 529 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
K+ L LP ++ SGG++ RV +A + + IL+LDEPT +LD +
Sbjct: 129 RAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNR 188
Query: 133 DALAEAI--KNYQGGVIL-VSHDERLIRETDCE 162
+ E I +G ++ + HDE +RE +
Sbjct: 189 AVVVELIREAKARGAALVGIFHDEE-VREAVAD 220
|
Length = 235 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 5e-05
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 21/92 (22%)
Query: 79 QLGMFGLPSYAHTIPIR-----------------DLSGGQKARVALAELTLNNPDILILD 121
G+ LP + IP DLSGGQ+ ++A+A + P +L+LD
Sbjct: 97 LTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD 156
Query: 122 EPTNNLDIESIDALAEAIK--NYQGG--VILV 149
EPT + I + I+ +GG ++LV
Sbjct: 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV 188
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 152
LSGGQ+ R+ +A PDIL++DEP + LD S L E + KNY +I+V+H+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTHN 221
|
Length = 267 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-05
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL--AEAIKNY---QGGVIL 148
+R +SGG++ RV++AE ++ +L D T LD S AL + I+
Sbjct: 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD--SSTALEILKCIRTMADVLKTTTF 173
Query: 149 VS 150
VS
Sbjct: 174 VS 175
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-05
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 75 KSRRQLGMFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131
+++R L +P A TI R LSGG + RV +A P +LI DEPT LD+
Sbjct: 145 EAKRMLDQVRIPE-AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTI 203
Query: 132 IDALAEAIKNYQG----GVILVSHD 152
+ + IK Q GVI ++HD
Sbjct: 204 QAQILQLIKVLQKEMSMGVIFITHD 228
|
Length = 623 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 152
+SGGQ+ RVALA + P +L+ DEP +NLD ++ E I+ Q + V+HD
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196
Query: 153 E 153
+
Sbjct: 197 Q 197
|
Length = 351 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-YQGGVILV 149
LS G+ + L + ++ PD+LILDEP + LD+ S LAE + + +Q G+ LV
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
|
Length = 490 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 87 SYAHTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAE 137
Y H + D LSGGQ+ R +A + + D ++LDEP NNLD+ + + L
Sbjct: 121 EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180
Query: 138 AIKNYQGGVILVSHD 152
+++V HD
Sbjct: 181 LADELGKTIVVVLHD 195
|
Length = 252 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-05
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 152
LSGGQ+ R+ +A PD++++DEPT+ LD S ++ L + +K +Y +I+V+H+
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS--IIIVTHN 225
|
Length = 271 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 9e-05
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
LSGGQ+ RV +A + PD+++LDEPT+ LD S I+ + +++ Q +ILV+H
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHS 206
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 152
LSGGQ+ R+ +A P++L++DEPT+ LD S I+ L + +K +Y +++V+H+
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYT--IVIVTHN 204
|
Length = 250 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI------KNYQGGVI 147
I LSGG+ RVA+A + D DEP++ LDI+ A I NY V+
Sbjct: 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNY---VL 193
Query: 148 LVSHD 152
+V HD
Sbjct: 194 VVEHD 198
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 17/84 (20%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--------IES 131
LG+ + +A P LSGGQ+ RVALA P +L+LDEP LD +E
Sbjct: 134 LGLVHMQEFAKRKP-HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 132 IDALAEAIKNYQGGV--ILVSHDE 153
+D L GV ++V+HD+
Sbjct: 193 VDILERV------GVTCVMVTHDQ 210
|
Length = 377 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LS GQK + + L + +P +L+LDEP + E + AE +K+ G V++V HD
Sbjct: 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDME 203
Query: 155 LIRETDC 161
+R
Sbjct: 204 FVRSIAD 210
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVILVSHD 152
LSGGQ+ R+ +A NP+++++DEP + LD I+ L E +K VI+V+H+
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEY-TVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142
P+ LSGG++ R+AL+ N +LILDEPT LD E L + ++ Y
Sbjct: 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKI 844
Query: 143 -QGGVILVSHDERL 155
Q VI+VSHDE L
Sbjct: 845 PQ--VIIVSHDEEL 856
|
Length = 880 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Query: 62 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
+ L++ F++ R LSGG++ RV +A NP ++LD
Sbjct: 120 LDALLEEFHI--THLRDSKAYS-------------LSGGERRRVEIARALAANPKFILLD 164
Query: 122 EPTNNLD---IESIDALAEAIKNYQGGVILVSHDERLIRET 159
EP +D + I + + +K+ GV++ H+ +RET
Sbjct: 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN---VRET 202
|
Length = 243 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSH 151
LSGGQ+ RVALA + IL+LDEP + LD E + +++ + Q +++VSH
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188
|
Length = 232 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 89 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQG 144
H I LSGG + +V + L P+IL+LDEPT +D+ E +AE K +G
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443
Query: 145 GVILVSHDERLIRETD 160
+I+ S L+ TD
Sbjct: 444 IIIISSEMPELLGITD 459
|
Length = 491 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
LS GQK +ALA + + P ILILDE T N+D + A+ +A+
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA 520
|
Length = 592 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVS 150
P LSGGQ+ R+ +A P+IL++DEPT+ LD S + + + + + +I+V+
Sbjct: 145 PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVT 204
Query: 151 HD 152
H+
Sbjct: 205 HN 206
|
Length = 252 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 73 YEKSRRQLGM--FGLPSYAHTIP-------IRDLSGGQKARVALAELTLNNPDILILDEP 123
Y K + M +GL +HT +R +SGG++ RV++AE +L I D
Sbjct: 180 YAKHIADVYMATYGL---SHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNA 236
Query: 124 TNNLD----IESIDALAE 137
T LD +E I AL
Sbjct: 237 TRGLDSATALEFIRALKT 254
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGVILVSHD 152
LSGGQ+ R+ +A P +L+LDEPT+ LD S + E +K ++ +I+V+H+
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 39 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLS 98
+PRLRIG+ L D P + ++F + R +G+ LP +A+ P L+
Sbjct: 101 NPRLRIGQI-LDFPLRLNTDLEPEQRRKQIFE-----TLRMVGL--LPDHANYYP-HMLA 151
Query: 99 GGQKARVALAELTLNNPDILILDEPTNNLD 128
GQK RVALA + P I+I DE +LD
Sbjct: 152 PGQKQRVALARALILRPKIIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
P+ LSGG++ RV LA +L+LDEPT +LDI
Sbjct: 136 PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172
|
Length = 402 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DALAEAIKNYQGGVILVSHD 152
LSGGQ+ R+ +A PD++++DEPT+ LD S D + E K Y +++V+H+
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT--IVIVTHN 205
|
Length = 251 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHD 152
LSGGQ+ R+ +A P+++++DEPT+ LD S + E I N + +I+V+H+
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208
|
Length = 254 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL- 155
LSGGQ+ R+ +A + P IL+ DE T+ LD + ++E+++ + I+++H RL
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH--RLS 646
Query: 156 -IRETD 160
IR D
Sbjct: 647 TIRNAD 652
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 97 LSGGQKARVALA-----ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIKNYQ---GGVI 147
LSGG+ R+ LA LT +L +LDEP+ L D L E +K + V+
Sbjct: 138 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193
Query: 148 LVSHDERLIRETD 160
+V HDE IR D
Sbjct: 194 VVEHDEDTIRAAD 206
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE--AIKNYQGGVILV-SHDE 153
LS G + VA+A L D+ +LDE NL E+ D L +K GG++L+ SH E
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE 183
Query: 154 RLIR 157
I+
Sbjct: 184 SSIK 187
|
Length = 195 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHD 152
LSGGQK RVA+A + P+I+ILDE T+ LD E + + E + YQ V+ ++HD
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
|
Length = 277 |
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 94 IRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQG 144
I LSGG+K RVA+A+ N+ +LI+DEPT LD + L + I+
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858
Query: 145 G---VILVSHDERLIRETD 160
VI++SH L+ D
Sbjct: 859 DIPQVIMISHHRELLSVAD 877
|
Length = 895 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 2e-04
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 151
LS GQ+ + LA L IL+LDE T ++D E+ + + I+ V+ ++H
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 2e-04
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-----IKNYQGGVILVS 150
+LSGGQ+ R+ +A N +I+ LD+P + LDI D L + +++ + ++LV+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 151 HDERLIRETDCELWALEKKN 170
H + + D W + K+
Sbjct: 200 HKLQYLPHAD---WIIAMKD 216
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDER 154
SGG+K R + ++ + P++ ILDE + LDI+++ +A+ + + + G I+V+H +R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206
Query: 155 LI 156
++
Sbjct: 207 IL 208
|
Length = 248 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 16/82 (19%)
Query: 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA- 134
+R+++ M Y H + SGG + RV +A L P +LI DEPT LD+ ++ A
Sbjct: 151 ARKRMKM-----YPH-----EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQAQ 199
Query: 135 ----LAEAIKNYQGGVILVSHD 152
L E + + +I+++HD
Sbjct: 200 IMTLLNELKREFNTAIIMITHD 221
|
Length = 330 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 90 HTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN 141
H +RD LSGG++ RV +A NP ++LDEP +D + I + E +++
Sbjct: 126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 142 YQGGVILVSHDERLIRET 159
GV++ H+ +RET
Sbjct: 186 SGLGVLITDHN---VRET 200
|
Length = 241 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 54 HLFPDDTPCEYLMKLFNLP-----------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQK 102
HL P+ T E L L LP ++R QL G+ T P++ LS GQ+
Sbjct: 89 HLVPEMTVAENLY-LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQR 146
Query: 103 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVIL-VSH 151
V +A+ N ++ DEPT++L I+ L I+ +G VIL VSH
Sbjct: 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD- 152
LSGGQ+ R+ +A P +L+LDEP + LD S I+ L +K + +I+V+H+
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM 223
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDY--REKLLTS 188
++ +R +D + L NGD +Y E++ TS
Sbjct: 224 QQALRVSDRTAFFL--------NGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDE 153
LS GQK +VAL L ++ + +LDEP LD S+ + I+ ++ G V+L SH +
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187
Query: 154 RLIRETDCELWAL 166
+ + D E + L
Sbjct: 188 LPLNKADYEEYHL 200
|
Length = 200 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVS 150
I +LSGGQK RV LA +++LDEP +D+++ I +L +++ +G +LVS
Sbjct: 140 IGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVS 198
|
Length = 272 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 68 LFNLP-YEKSRRQ--------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118
L P + ++ + L GL +A+ +L+ GQ+ R+ +A + P+IL
Sbjct: 117 LLKTPAFRRAESEALDRAATWLERVGLLEHANR-QAGNLAYGQQRRLEIARCMVTQPEIL 175
Query: 119 ILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLI 156
+LDEP L+ + L E I + V+L+ HD +L+
Sbjct: 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV 217
|
Length = 255 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 68 LFNLPYEKSR--RQLGMFGLPSYAHTIPIRDL----------SGGQKARVALAELTLNNP 115
LF P++ R R + + L +P DL SGGQK RV++A +N
Sbjct: 700 LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 116 DILILDEPTNNLD 128
D+ I D+P + LD
Sbjct: 760 DVYIFDDPLSALD 772
|
Length = 1622 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R SGG + R+ +A + P ++ +DEPT LD+ +D L +++ VI+V+
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVT 206
Query: 151 HDERLIR 157
HD + R
Sbjct: 207 HDLGVAR 213
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV-----ILVS 150
+LSGGQK RV+LA +N DI + D+P + +D + E + +G + ILV+
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819
Query: 151 HDERLIRETD 160
H + + D
Sbjct: 820 HGISYLPQVD 829
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 97 LSGGQKARVALA-----ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIKNYQ-GG--VI 147
LSGG+ R+ LA LT +L +LDEP+ L + L E +K + G VI
Sbjct: 482 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVI 537
Query: 148 LVSHDERLIRETD 160
+V HDE IR D
Sbjct: 538 VVEHDEDTIRAAD 550
|
Length = 935 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 5e-04
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVILVSHD- 152
LSGGQ+ R+ +A PD+L++DEP + LD ++ L +K Q +I+V+H+
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM 220
Query: 153 ERLIRETDCELWALEKKNIRKFNGDFDDY---REKLLT-SLGEAMVYNPSVAAEQD 204
++ R D + FN + D+Y R KL+ S E M +P ++
Sbjct: 221 QQASRVADWTAF---------FNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEARE 267
|
Length = 274 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDE 153
+LSGGQ+ R+ +A P +L++DEP + LD + + + I+ + +I+V+H
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208
Query: 154 RLIRE 158
+ ++
Sbjct: 209 KQAKK 213
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAI-KNYQGGVILVSH 151
LSGGQ+ R+ +A PD++++DEPT+ LD I+ L E + KNY +++V+H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT--IVIVTH 202
|
Length = 249 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSH 151
LSGGQ+ R+ +A P++L+LDEPT+ LD S I+ L +K+ + +++V+H
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 92 IPIRD--LSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNY--QGG 145
P RD LS G +ALA L L+ P +L+LDEP +L + + ALAE +++ +
Sbjct: 264 DPFRDRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ 323
Query: 146 VILVSHDERLIR--ETDCELW 164
VI+ +H RL+ E W
Sbjct: 324 VIVSTHSPRLLNAVEEHSVFW 344
|
Length = 373 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 93 PIRDLSGGQKARVALAELTLN---NPDILILDEPTNNLDIESIDALAEAIKN--YQG-GV 146
P+ LSGG+ R+ LA L P + +LDEPT L I AL +++ +QG V
Sbjct: 806 PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV 865
Query: 147 ILVSHDERLIRETD 160
+++ H+ +++ D
Sbjct: 866 VIIEHNMHVVKVAD 879
|
Length = 1809 |
| >gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 7e-04
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 94 IRDLSGGQKA-------RVALAEL-----TLNNPDILILDEPTNNLDIESIDALAEAIKN 141
LSGG+K ALA P ++ LDE LD E+I +L E ++
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
|
Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 7e-04
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 68 LFNLPYEKSR--RQLGMFGLPSYAHTIPIRDL----------SGGQKARVALAELTLNNP 115
LF +E R R + + L +P RDL SGGQK RV++A +N
Sbjct: 700 LFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759
Query: 116 DILILDEPTNNLD 128
DI I D+P + LD
Sbjct: 760 DIYIFDDPLSALD 772
|
Length = 1495 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 8e-04
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 152
LSGGQ+ R+ +A +P +L++DEP + LD S + E I K+Y +++V+H+
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYT--IVIVTHN 204
|
Length = 250 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 8e-04
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154
SG + R+ALA PD+LILDE T+ LD E L + ++ +
Sbjct: 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
Query: 155 LI 156
+I
Sbjct: 119 VI 120
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 9e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 129
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 9e-04
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 33/122 (27%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQ 79
GEL P++G+++ HSG F T ++M +F L Y++ R
Sbjct: 474 GELEPSEGKIK------------HSGRISFSPQTS--WIMPGTIKDNIIFGLSYDEYRYT 519
Query: 80 --LGMFGLPSYAHTIPIRD----------LSGGQKARVALAELTLNNPDILILDEPTNNL 127
+ L P +D LSGGQ+AR++LA + D+ +LD P +L
Sbjct: 520 SVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579
Query: 128 DI 129
D+
Sbjct: 580 DV 581
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.001
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVS 150
P LSGGQ+ R+ +A P I++ DEPT+ LD S + + I N + +++V+
Sbjct: 151 PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVT 210
Query: 151 HD 152
H+
Sbjct: 211 HN 212
|
Length = 258 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
R+LSGGQ+ RVA+ + P + + DEP +NLD
Sbjct: 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHD 152
LSGGQ+ R+ +A P+++++DEP + LD S + E + Q +I+V+H+
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
|
Length = 264 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.001
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 150
R SGG + R+ +A + P ++ +DEPT LD+ +D L ++ V++V+
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 151 HDERLIR 157
HD + R
Sbjct: 210 HDLAVAR 216
|
Length = 258 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHDE 153
LSGGQ+ R+ +A + P+++++DEP + LD S I+ L + +K I+ + +
Sbjct: 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207
Query: 154 RLIRETD 160
+ R +D
Sbjct: 208 QAARASD 214
|
Length = 251 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.001
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQG-GVILVSHD 152
LSGG++ +A+A ++ P +L+LDEP+ L + ++ + EAI+ +G ++LV +
Sbjct: 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN 191
Query: 153 ERLIRE 158
R E
Sbjct: 192 ARFALE 197
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD------IESIDALAEAIKNYQGGVILVS 150
LSGGQ+ R+ +A P++L+LDEP + LD +E + + E K+Y + LV+
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL--MVELKKDYT--IALVT 205
Query: 151 HD-ERLIRETD 160
H+ ++ IR D
Sbjct: 206 HNMQQAIRVAD 216
|
Length = 261 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.002
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALA-----ELTLNNPDILILDEPTNNLDIESIDALAEA 138
GLP + LSGG++ R ALA EL ILDEP+ L + L
Sbjct: 464 GLPYLTPERALATLSGGEQERTALAKHLGAELI---GITYILDEPSIGLHPQDTHKLINV 520
Query: 139 IKNY--QGG-VILVSHDERLIRETD 160
IK QG V+LV HDE++I D
Sbjct: 521 IKKLRDQGNTVLLVEHDEQMISLAD 545
|
Length = 1809 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.002
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD------IESIDALAEAIKNYQGGVILVS 150
LSGGQ+ R+ +A +P+++++DEP + LD IE D + E + Y V++V+
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE--DLIEELAEEYT--VVVVT 256
Query: 151 HD 152
H+
Sbjct: 257 HN 258
|
Length = 305 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.002
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
+LSGGQ+ R+ +A P+++++DEP + LD S I+ L E +K + +I+V+H+
Sbjct: 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 152
LSGGQ+ R+ +A P+++++DEP + LD S + E + KN+ +++V+H+
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFT--IVIVTHN 212
Query: 153 -ERLIRETD 160
++ +R +D
Sbjct: 213 MQQAVRVSD 221
|
Length = 269 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 152
LSGGQ+ R+ +A P++L+LDEP + LD S I+ L +K +Y V++V+H+
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYT--VVIVTHN 214
|
Length = 260 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 96 DLSGG--QKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILV 149
++SGG Q+ +ALA L +I DEPT +LD+ + +D L ++ G++LV
Sbjct: 140 EMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197
Query: 150 SHD 152
+HD
Sbjct: 198 THD 200
|
Length = 254 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 89 AHTIPIRD---LSGGQKARV----ALAEL-----TLNNPDILILDEPTNNLDIESIDALA 136
A + RD LSGG+ ARV LA+L P L+LDEPT LD+ L
Sbjct: 135 ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL 194
Query: 137 EAI----KNYQGGVILVSHDERL 155
+ + +++ GV+ + HD L
Sbjct: 195 DTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 152
LSGGQ+ R+ +A PD+L++DEP + LD S I+ L +K +++V+H+
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHN 206
|
Length = 258 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 37.8 bits (87), Expect = 0.003
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSH 151
LSGGQ+ R+ +A P++L++DEPT+ LD + + E I K Y +I+V+H
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYS--IIIVTH 282
|
Length = 329 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 37.3 bits (86), Expect = 0.003
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--YQGGVILVSHD 152
SGGQ+ R+ +A P +++LDEPT+ LD S + E + +Q I+V+H+
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.003
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 96 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG--VILVSH 151
LSGG++ +A+A ++ P +L+LDEP+ L + ++ + EAIK +GG ++LV
Sbjct: 136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQ 195
Query: 152 DERLIRE 158
+ R E
Sbjct: 196 NARFALE 202
|
Length = 237 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.004
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 69 FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+N Y +++ L L + T P+ D GGQ+ V +A+ +LILDEP+++L
Sbjct: 114 YNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173
Query: 129 IESIDALAEAIKNYQG-GV--ILVSH 151
+ + L + I++ + GV + +SH
Sbjct: 174 EKETEILLDIIRDLKAHGVACVYISH 199
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.004
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--N 141
GL A +P +LSGG R ALA PD+++ DEP D ++ L + I N
Sbjct: 132 GLRGAAKLMP-SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELN 190
Query: 142 YQGGV--ILVSHD 152
GV ++VSHD
Sbjct: 191 SALGVTCVVVSHD 203
|
Length = 269 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.98 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.98 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.98 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.98 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.98 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.98 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.98 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.98 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.98 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.98 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.98 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.98 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| KOG0066|consensus | 807 | 99.97 | ||
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.97 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.97 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.97 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.97 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.97 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.96 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.96 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.96 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.96 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.96 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.96 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.96 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.96 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.96 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.96 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| KOG0927|consensus | 614 | 99.96 | ||
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.96 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.96 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.96 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.96 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.96 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.96 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.96 | |
| KOG0062|consensus | 582 | 99.96 | ||
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.96 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.96 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.96 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.95 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.95 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.95 | |
| KOG0055|consensus | 1228 | 99.95 | ||
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.95 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.95 | |
| KOG0057|consensus | 591 | 99.95 | ||
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.95 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.95 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.95 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.95 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.95 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.95 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.95 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.95 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.94 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.94 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.94 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.94 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.94 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.94 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.94 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.94 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.94 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.94 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.94 | |
| KOG0058|consensus | 716 | 99.94 | ||
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.93 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.93 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.93 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.93 | |
| KOG0059|consensus | 885 | 99.93 | ||
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.93 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.93 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.93 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.93 | |
| KOG0062|consensus | 582 | 99.92 | ||
| KOG0055|consensus | 1228 | 99.92 | ||
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.9 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.9 | |
| KOG0061|consensus | 613 | 99.9 | ||
| KOG0054|consensus | 1381 | 99.89 | ||
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.89 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.89 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.89 | |
| KOG0927|consensus | 614 | 99.89 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.89 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.88 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.88 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.87 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.86 | |
| KOG0054|consensus | 1381 | 99.85 | ||
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.85 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.84 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.83 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.83 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.83 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.82 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.81 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.81 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.81 | |
| KOG0056|consensus | 790 | 99.81 | ||
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.81 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.81 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.79 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.79 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.78 | |
| KOG0066|consensus | 807 | 99.77 | ||
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.76 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.76 | |
| KOG0065|consensus | 1391 | 99.74 | ||
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.73 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.73 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.66 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.64 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.63 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.63 | |
| KOG0060|consensus | 659 | 99.63 | ||
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.6 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.6 | |
| KOG2355|consensus | 291 | 99.59 | ||
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.57 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.56 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.55 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.52 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.52 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.49 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.49 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.48 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.47 | |
| KOG0064|consensus | 728 | 99.47 | ||
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.46 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.46 | |
| KOG0063|consensus | 592 | 99.46 | ||
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.43 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.4 | |
| KOG0065|consensus | 1391 | 99.39 | ||
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.37 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.31 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.26 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.18 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.17 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.16 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.13 | |
| KOG0063|consensus | 592 | 99.12 | ||
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.11 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.09 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.08 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 99.07 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 99.04 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.0 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.0 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.96 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.95 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.95 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.87 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.82 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.81 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.7 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.64 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.46 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.45 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 98.18 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.05 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.0 | |
| COG4637 | 373 | Predicted ATPase [General function prediction only | 97.97 | |
| PF13175 | 415 | AAA_15: AAA ATPase domain | 97.92 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 97.81 | |
| KOG0962|consensus | 1294 | 97.8 | ||
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 97.78 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 97.66 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 97.64 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 97.61 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 97.56 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 97.5 | |
| KOG0933|consensus | 1174 | 97.47 | ||
| KOG0964|consensus | 1200 | 97.41 | ||
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 97.37 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 97.35 | |
| PF13166 | 712 | AAA_13: AAA domain | 97.34 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.14 | |
| COG1195 | 363 | RecF Recombinational DNA repair ATPase (RecF pathw | 97.12 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 96.77 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 96.74 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 96.72 | |
| KOG0996|consensus | 1293 | 96.51 | ||
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 96.44 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 96.34 | |
| COG0497 | 557 | RecN ATPase involved in DNA repair [DNA replicatio | 96.24 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 96.24 | |
| KOG0018|consensus | 1141 | 96.18 | ||
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 96.02 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 95.68 | |
| PF13514 | 1111 | AAA_27: AAA domain | 95.52 | |
| COG3044 | 554 | Predicted ATPase of the ABC class [General functio | 94.73 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 94.33 | |
| COG4913 | 1104 | Uncharacterized protein conserved in bacteria [Fun | 94.17 | |
| TIGR01070 | 840 | mutS1 DNA mismatch repair protein MutS. | 94.11 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 93.65 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 93.35 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 93.23 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 93.05 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 92.97 | |
| COG4694 | 758 | Uncharacterized protein conserved in bacteria [Fun | 92.73 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 92.23 | |
| COG3593 | 581 | Predicted ATP-dependent endonuclease of the OLD fa | 92.2 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 91.87 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 91.41 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 90.12 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 90.11 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 88.84 | |
| COG4938 | 374 | Uncharacterized conserved protein [Function unknow | 88.73 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 88.53 | |
| PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; | 88.4 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 87.66 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 87.59 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=274.55 Aligned_cols=175 Identities=25% Similarity=0.366 Sum_probs=151.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|+++.+|+-=. ++|||+| +.|+.+|++|+|..++ |+++|+|||+.+ +||.+|+.+|+...
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn--LFPHlTvleNv~la 101 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN--LFPHLTVLENVTLA 101 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccc--ccccchHHHHHHhh
Confidence 456789999995443 5999999 9999999999998754 457999999975 99999999998632
Q ss_pred ----cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 69 ----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 69 ----~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.+.++ +.+.++|+++||.+..+. +|.+|||||||||+|||||+.+|+++|+|||||+|||+...++++.++
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~ 180 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADA-YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHH
Confidence 24443 345678999999998886 789999999999999999999999999999999999999999999988
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|+|+|||++.|+.+++||+++|++|.+++ .|+++++
T Consensus 181 ~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie-~g~p~~~ 223 (240)
T COG1126 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE-EGPPEEF 223 (240)
T ss_pred HHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE-ecCHHHH
Confidence 76 5699999999999999999999999998876 4566554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=261.98 Aligned_cols=177 Identities=29% Similarity=0.353 Sum_probs=151.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+..|....+|+|=. ++|||+| |.|+++|++|+|+..+ ++++|++||... +|..+||+||+..
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA--LFssltV~eNVaf 108 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA--LFSSLTVFENVAF 108 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc--cccccchhHhhhe
Confidence 34567788888775 5999999 9999999999998643 457999999975 9999999999864
Q ss_pred ----hcCCCHHHH----HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 68 ----LFNLPYEKS----RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 68 ----~~~~~~~~~----~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
....+++.+ ..-|+.+||.....++.|++|||||++|++||||++.+|+++++||||+||||.+...+-++|
T Consensus 109 plre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI 188 (263)
T COG1127 109 PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188 (263)
T ss_pred ehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHH
Confidence 224455444 345889999887334588999999999999999999999999999999999999999999888
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++ +.|+++||||++.+..+||+++++.+|++. +.|+++++.+
T Consensus 189 ~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 189 RELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred HHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 765 679999999999999999999999999996 6899888764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=264.46 Aligned_cols=162 Identities=25% Similarity=0.321 Sum_probs=139.9
Q ss_pred ccccCeeeeecCC-C-Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC---C
Q psy2681 4 MCLKLRIAVLQGL-R-NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---L 71 (211)
Q Consensus 4 ~~~~~~~~~i~~~-~-~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~---~ 71 (211)
+..|+-+++| |- . ++|||+| ++|+.+|++|+|...+ ...++|+||++. ++|++|+.+|+..... .
T Consensus 26 v~~GEfvsil-GpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~--LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 26 VEKGEFVAIL-GPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA--LLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc--ccchhhHHhhheehhhcccc
Confidence 4567788888 55 3 4999999 9999999999998754 347999999975 9999999999863221 1
Q ss_pred C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cC
Q psy2681 72 P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQ 143 (211)
Q Consensus 72 ~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~ 143 (211)
+ .+.+.++++.+||.+..++ +|++|||||||||+|||||+.+|++|||||||++||..++..+.+.+.+ .+
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~-~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~ 181 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR 181 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhc-CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC
Confidence 1 3457889999999998876 7899999999999999999999999999999999999999888877754 36
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
.||++||||++++...+|||++|.++
T Consensus 182 ~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 182 KTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 79999999999999999999999984
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=269.00 Aligned_cols=172 Identities=25% Similarity=0.361 Sum_probs=148.1
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|....+| |.- ++|||+| +.++.+|++|+|..++ |++||++||++. +....||.+|++
T Consensus 29 I~~GeI~GII-G~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn--LLssrTV~~NvA 105 (339)
T COG1135 29 IPKGEIFGII-GYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN--LLSSRTVFENVA 105 (339)
T ss_pred EcCCcEEEEE-cCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccc--ccccchHHhhhh
Confidence 4567778888 663 6999999 9999999999997643 568999999976 788899999986
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.++ .++.++++.+||+++.++ +|.+|||||||||+|||||+.+|++||+|||||+|||++.+.++++|
T Consensus 106 ~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL 184 (339)
T COG1135 106 FPLELAGVPKAEIKQRVAELLELVGLSDKADR-YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL 184 (339)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence 42 34443 456789999999988776 78999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++. +.||++|||.|+.+.++|+|+.+|++|++++ .|+..+
T Consensus 185 ~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE-~G~v~~ 228 (339)
T COG1135 185 KDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE-EGTVSE 228 (339)
T ss_pred HHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE-eccHHH
Confidence 754 6799999999999999999999999999986 455433
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=260.13 Aligned_cols=186 Identities=26% Similarity=0.303 Sum_probs=150.3
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
+++..|.-+.+| |=+ ++|||+| +.|+++|.+|+|.... +.+||||||..........||.+.+...
T Consensus 25 l~v~~G~~~~ii-GPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~ 103 (254)
T COG1121 25 LSVEKGEITALI-GPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRY 103 (254)
T ss_pred EEEcCCcEEEEE-CCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCc
Confidence 345667777777 665 5999999 9999999999998643 2579999997643344567999988631
Q ss_pred c-----C----CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 F-----N----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
. + .+.+.+.++|+++|+.++.++ ++.+|||||+|||.|||||+++|++|+|||||+|+|+.++..+.++|
T Consensus 104 ~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL 182 (254)
T COG1121 104 GKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182 (254)
T ss_pred ccccccccccHHHHHHHHHHHHHcCchhhhCC-cccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 1 1 124678899999999988875 89999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhhh
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLGE 191 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~~ 191 (211)
+++ +.||++||||+..+..++|+++.|+.+ +. ..|+.++..+ +.+...+.
T Consensus 183 ~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~-~~G~~~~~~~~~~l~~~~g 236 (254)
T COG1121 183 KELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LI-ASGPPEEVLTEENLEKAFG 236 (254)
T ss_pred HHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eE-eccChhhccCHHHHHHHhC
Confidence 876 579999999999999999999988654 43 3677766543 44444443
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=259.51 Aligned_cols=169 Identities=25% Similarity=0.368 Sum_probs=144.4
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
+.-|.-..+|+-=. ++||++| |.++++|++|+|..++ |++|||+-|... +||.+|+.+|+...
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqig--LFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIG--LFPHLTVAENIATVPK 101 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcc--cCCCccHHHHHHhhhh
Confidence 44566666773333 4999999 9999999999998653 678999999876 99999999998743
Q ss_pred -cCCCH----HHHHHHHHhCCCCC--ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 -FNLPY----EKSRRQLGMFGLPS--YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 -~~~~~----~~~~~~l~~~gl~~--~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.++++ ++++++++.+||+. +.+ ++|++|||||+|||.+||||+.+|+++|+||||++|||.++..+.+.+.+
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~-RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYAD-RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhh-cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence 34443 45778999999975 555 58899999999999999999999999999999999999999998887754
Q ss_pred ----cCCeEEEEecChHHHHhhCCeEEEEeCCceeeec
Q psy2681 142 ----YQGGVILVSHDERLIRETDCELWALEKKNIRKFN 175 (211)
Q Consensus 142 ----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~ 175 (211)
+++|||+||||++++.+++||+.+|++|+++.+.
T Consensus 181 lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 181 LQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred HHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeC
Confidence 4789999999999999999999999999998764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=258.35 Aligned_cols=186 Identities=25% Similarity=0.348 Sum_probs=162.6
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
|.+-.|+-+.+| |.- ++|||+| +.|+..|++|+|..++ +.++||+||.+. +.+.++|.+|
T Consensus 25 l~I~~GE~VaiI-G~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n--Lv~r~sv~~N 101 (258)
T COG3638 25 LEINQGEMVAII-GPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN--LVPRLSVLEN 101 (258)
T ss_pred EEeCCCcEEEEE-CCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC--cccccHHHHH
Confidence 677889999999 764 6999999 9999999999997543 457999999976 8999999998
Q ss_pred HHhh-----------cCC-C---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 65 LMKL-----------FNL-P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 65 ~~~~-----------~~~-~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
+... +++ + +..+.+.|+++|+.++... +.++|||||+|||+|||||+++|+++|.|||+++|||
T Consensus 102 Vl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp 180 (258)
T COG3638 102 VLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180 (258)
T ss_pred HHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccCh
Confidence 8521 122 1 2345678999999988876 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHHHhhhh
Q psy2681 130 ESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEA 192 (211)
Q Consensus 130 ~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~ 192 (211)
.+.+.+++.|++. +.|+|++.|+++.+.++|+|++.|++|+++ |+|+.+++.++.++.+|..
T Consensus 181 ~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~~~~~~iYg~ 246 (258)
T COG3638 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTDEALDEIYGN 246 (258)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhHHHHHHHhcc
Confidence 9999999999865 579999999999999999999999999996 7999999888888888874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=255.22 Aligned_cols=171 Identities=21% Similarity=0.280 Sum_probs=148.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++.|+...+++-=. ++|||.+ ++|+.+|+.|+|..++ .+.|.+|||+|...+.|..|+.+.+....
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl 109 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPL 109 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhh
Confidence 56788888884333 5999999 9999999999998654 35699999999988999999988776433
Q ss_pred C---C--CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 N---L--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 ~---~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
. . ..+++.++++.+||.....++++.+|||||+||++|||||+.+|++||||||||+||+..+.++++++.+.
T Consensus 110 ~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~ 189 (252)
T COG1124 110 RPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK 189 (252)
T ss_pred ccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH
Confidence 2 2 23457889999999876666789999999999999999999999999999999999999999999999754
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKF 174 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~ 174 (211)
+.|+|+||||+..+..+|||+++|++|++++.
T Consensus 190 ~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 190 ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred hcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 56999999999999999999999999999874
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=262.09 Aligned_cols=185 Identities=25% Similarity=0.305 Sum_probs=154.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
+..|...++| |=+ ++|||+| ++|+++|.+|+|..++ .++++|+||.+. ..+.+||.|.+...
T Consensus 25 i~~G~i~~ii-GpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~--~~~~~tV~d~V~~GR 101 (258)
T COG1120 25 IPKGEITGIL-GPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPS--APFGLTVYELVLLGR 101 (258)
T ss_pred ecCCcEEEEE-CCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCC--CCCCcEEeehHhhcC
Confidence 3456778888 655 4999999 9999999999998654 357999999974 46678888877521
Q ss_pred ------cC-CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 ------FN-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ------~~-~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+. .+ .+.+.++|+.+|+.+..++ ++.+|||||||||.|||||+++|++||||||||+||+.++.+++++
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l 180 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-cccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH
Confidence 11 12 2357788999999988875 8999999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCCh-HHHHHHHHHHhhhhh
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF-DDYREKLLTSLGEAM 193 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~-~~~~~~~~~~~~~~~ 193 (211)
++++ +.|||+|+||++.+.++||++++|++|+++. .|.+ +.+.++.++.+|..-
T Consensus 181 l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G~p~evlT~e~l~~Vygv~ 239 (258)
T COG1120 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QGTPEEVLTEENLREVYGVD 239 (258)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ecCcchhcCHHHHHHHhCCc
Confidence 9876 4699999999999999999999999999976 5655 456677788877643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=250.86 Aligned_cols=165 Identities=28% Similarity=0.389 Sum_probs=140.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|+-+.++ |=- ++|||++ +.|+.+|++|.+.... +..|||+||+.. +.+++|+.||
T Consensus 27 ~i~~Ge~vaI~-GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n--Ll~~ltv~EN 103 (226)
T COG1136 27 EIEAGEFVAIV-GPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN--LLPDLTVLEN 103 (226)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC--CCCCCCHHHH
Confidence 35667788888 543 5999999 9999999999987542 457999999975 8999999999
Q ss_pred HHh---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~---~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.. +.+.. ...+..+++.+|+.+...+++|.+|||||||||+|||||+.+|+++|+||||.+||..+.+.+++
T Consensus 104 v~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ 183 (226)
T COG1136 104 VELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183 (226)
T ss_pred HHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH
Confidence 863 22222 34567789999998776655899999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
++.+. +.|||+||||...+. .|||++.+++|++
T Consensus 184 ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 184 LLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 99765 569999999999886 7899999999985
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=260.22 Aligned_cols=175 Identities=31% Similarity=0.429 Sum_probs=149.0
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
+..|....++ |-+ ++|||+| ++|+++|++|+|...+ ++++||+||++. +++.+|+.|++..
T Consensus 28 i~~Gei~gll-G~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~--~~~~lT~~e~l~~~~~ 104 (293)
T COG1131 28 VEPGEIFGLL-GPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS--LYPELTVRENLEFFAR 104 (293)
T ss_pred EcCCeEEEEE-CCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCC--CCccccHHHHHHHHHH
Confidence 3456667777 555 5999999 9999999999998653 346999999986 8999999998753
Q ss_pred hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++.. .+.++++++.+||.+..+ +++++||+||||||+||+||+++|+++||||||+||||.++..++++|+++
T Consensus 105 l~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 105 LYGLSKEEAEERIEELLELFGLEDKAN-KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred HhCCChhHHHHHHHHHHHHcCCchhhC-cchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 34432 456889999999987554 589999999999999999999999999999999999999999999999876
Q ss_pred --C-CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 --Q-GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 --~-~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+ .||+++||.+++++.+||++++|++|+++. .|+..++..
T Consensus 184 ~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~-~g~~~~l~~ 226 (293)
T COG1131 184 KEGGVTILLSTHILEEAEELCDRVIILNDGKIIA-EGTPEELKE 226 (293)
T ss_pred hCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE-eCCHHHHHH
Confidence 3 599999999999999999999999999975 567766543
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=257.01 Aligned_cols=174 Identities=25% Similarity=0.315 Sum_probs=147.8
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|+.+.+.+--. ++|||++ |+|++.|++|.|..+. .++|||+||+.. +|+.+||.+|+++..
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA--LF~HmtVa~NIAFGl 102 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA--LFPHMTVADNIAFGL 102 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh--hcccchHHhhhhhcc
Confidence 45677788884443 5999999 9999999999997543 357999999975 899999999997533
Q ss_pred C---------CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 70 N---------LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 70 ~---------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. ..+.++.++|+.+.|+...++ ++.+|||||||||++||||+.+|++||||||+++||...+..+...|+
T Consensus 103 ~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr 181 (345)
T COG1118 103 KVRKERPSEAEIRARVEELLRLVQLEGLADR-YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 181 (345)
T ss_pred cccccCCChhhHHHHHHHHHHHhcccchhhc-CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHH
Confidence 1 123467789999999988775 789999999999999999999999999999999999999888887776
Q ss_pred h----cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 N----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+ ++.|.++||||.+++.+++||+++|++|+|.. .|++.+.
T Consensus 182 ~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq-vg~p~ev 225 (345)
T COG1118 182 KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ-VGPPDEV 225 (345)
T ss_pred HHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee-eCCHHHH
Confidence 5 47799999999999999999999999999965 4666554
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=251.58 Aligned_cols=176 Identities=30% Similarity=0.417 Sum_probs=147.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..+..+.++ |-+ ++|||++ ++|+++|++|+|..+. ++++||+||+|..++ ...||.+-+.+
T Consensus 26 ~i~~Ge~~~i~-G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~-~~~tV~~evaf 103 (235)
T COG1122 26 EIEKGERVLLI-GPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAF 103 (235)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccc-ccCcHHHHHhh
Confidence 34567788888 775 5999999 9999999999996432 467999999997554 45577776653
Q ss_pred h---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+.+. +++.++++.+|+.+.+++ ++.+|||||||||+||.+|+.+|++||||||||+||+.++..++++++
T Consensus 104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 104 GLENLGLPREEIEERVAEALELVGLEELLDR-PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCchhhccC-CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 2 23333 456789999999988765 899999999999999999999999999999999999999999999998
Q ss_pred hc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++ +.|||++|||++++..+||++++|++|+++ +.|++.++.
T Consensus 183 ~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~ 227 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIF 227 (235)
T ss_pred HHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHh
Confidence 76 359999999999999999999999999996 467765544
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=257.08 Aligned_cols=176 Identities=26% Similarity=0.332 Sum_probs=149.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK-- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~-- 67 (211)
++..|..+.++ |-+ ++|||++ |+|+++|++|+|...+ +.++||+||++. +++.+|+.+++..
T Consensus 29 ~i~~Gei~gll-GpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~--~~~~~tv~e~l~~~~ 105 (306)
T PRK13537 29 HVQRGECFGLL-GPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDN--LDPDFTVRENLLVFG 105 (306)
T ss_pred EEeCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCc--CCCCCcHHHHHHHHH
Confidence 35667888888 554 5999999 9999999999997643 346999999975 7888999998753
Q ss_pred -hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 68 -LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 68 -~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.++... .++.++++.+++....++ +++.||||||||++||+||+++|+++||||||+|||+.++..++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 106 RYFGLSAAAARALVPPLLEFAKLENKADA-KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchHhcC-chhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 233332 345678999999876664 78999999999999999999999999999999999999999999999876
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++||+++++.++||++++|++|+++. .|+.+++.+
T Consensus 185 ~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~-~g~~~~l~~ 227 (306)
T PRK13537 185 LARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA-EGAPHALIE 227 (306)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 5699999999999999999999999999964 677776643
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=256.71 Aligned_cols=177 Identities=25% Similarity=0.342 Sum_probs=149.9
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++. +++.+|+.+++...
T Consensus 14 ~~i~~Ge~~~l~-G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~ 90 (302)
T TIGR01188 14 FKVREGEVFGFL-GPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--VDEDLTGRENLEMM 90 (302)
T ss_pred EEEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--CCCCCcHHHHHHHH
Confidence 456788889999 554 5999999 9999999999998643 236999999875 78889999987532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
++.. .+++.++++.+|+.+..++ ++.+|||||||||+||+||+++|++|||||||+|||+.++..++++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 169 (302)
T TIGR01188 91 GRLYGLPKDEAEERAEELLELFELGEAADR-PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169 (302)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhCC-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 2322 2346789999999876664 7899999999999999999999999999999999999999999999987
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+ +.|||++||+++++.++||++++|++|+++. .|+.+++..
T Consensus 170 ~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~l~~ 213 (302)
T TIGR01188 170 LKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTPEELKR 213 (302)
T ss_pred HHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHH
Confidence 5 5699999999999999999999999999874 677766544
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=259.53 Aligned_cols=174 Identities=24% Similarity=0.312 Sum_probs=148.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.++.|..+.++ |-. ++|||++ |+|+++|++|+|..++ +++|||+||++. +++..|+.+|+
T Consensus 27 ~i~~Gei~gIi-G~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~--l~~~~tv~eni 103 (343)
T TIGR02314 27 HVPAGQIYGVI-GASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFN--LLSSRTVFGNV 103 (343)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcc--ccccCcHHHHH
Confidence 46778888999 554 5999999 9999999999997542 346999999975 78889999988
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.+. +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..++++
T Consensus 104 ~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l 182 (343)
T TIGR02314 104 ALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 642 22222 346788999999887765 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|++. +.|||++||+++.+.++||++++|++|+++. .|+..++
T Consensus 183 L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v 228 (343)
T TIGR02314 183 LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QGTVSEI 228 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9764 5799999999999999999999999999975 5666554
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=254.09 Aligned_cols=167 Identities=25% Similarity=0.384 Sum_probs=141.7
Q ss_pred eeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 10 IAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 10 ~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
|-+|-|+- ++|||++ +.++++|++|+|...+ ++++++|||+.. ++|+.||.+|..+..
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev 133 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEV 133 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccchhHhhhhhcceee
Confidence 44455884 5999999 9999999999997542 567999999976 899999999986432
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH----
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---- 140 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~---- 140 (211)
+.+ .+++.++++.+||+++.++ ++.+|||||||||.|||||+.+|++||+|||||+|||--+.++.+.|.
T Consensus 134 ~Gv~~~er~~~a~~~l~~VgL~~~~~~-yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~ 212 (386)
T COG4175 134 QGVPKAEREERALEALELVGLEGYADK-YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212 (386)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhc-CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHH
Confidence 333 3457789999999998886 789999999999999999999999999999999999977766666554
Q ss_pred hcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 141 NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 141 ~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++++||++||||++++.++.+||.+|++|+++. .|++++
T Consensus 213 ~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ-~Gtp~e 251 (386)
T COG4175 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ-VGTPEE 251 (386)
T ss_pred HhCCeEEEEecCHHHHHhccceEEEecCCeEEE-eCCHHH
Confidence 457899999999999999999999999999986 466554
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=245.27 Aligned_cols=175 Identities=26% Similarity=0.311 Sum_probs=146.1
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
+++..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.++
T Consensus 21 ~~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~ 97 (235)
T cd03261 21 LDVRRGEILAII-GPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA--LFDSLTVFEN 97 (235)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc--cCCCCcHHHH
Confidence 356788899999 554 5999999 9999999999997532 235999999874 7788899998
Q ss_pred HHhh---c-CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 65 LMKL---F-NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 65 ~~~~---~-~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
+... . ... ...+.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~ 176 (235)
T cd03261 98 VAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-YPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176 (235)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 7532 1 122 2345678999999876654 78999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 177 ~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 224 (235)
T cd03261 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA-EGTPEEL 224 (235)
T ss_pred HHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE-ecCHHHH
Confidence 999764 5699999999999999999999999999864 5666544
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=236.74 Aligned_cols=177 Identities=21% Similarity=0.241 Sum_probs=153.0
Q ss_pred ccccccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 2 CQMCLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
|++.+|.+.++++== -++|||++ |+|+..|.+|+|+.++ .+-++++||+++ +|..+||.+|+....
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN--LFaHLtV~qNigLGl~ 97 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN--LFAHLTVAQNIGLGLS 97 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccc--cchhhhhhhhhcccCC
Confidence 788899999999333 26999999 9999999999998753 345999999975 999999999985321
Q ss_pred ------CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 ------NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 ------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
...++++..++.++|+.++.++ .+.+|||||||||+|||+|+.+.+|++|||||++|||.-+.++..++.+.
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~~R-LP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~ 176 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFLKR-LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHhhh-CccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence 1235667889999999998875 78999999999999999999999999999999999999999999988765
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|++||||+.+.+.+++++++++.+|++. +.|+..++.
T Consensus 177 ~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~ 218 (231)
T COG3840 177 DERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELL 218 (231)
T ss_pred HhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHh
Confidence 569999999999999999999999999996 577766654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=259.91 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=148.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
++..|..+.+++--. ++|||++ |+|+.+|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~ 103 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYA--LYPHMSVRENMAYGLKI 103 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--ccCCCCHHHHHHhHHhh
Confidence 356788888884443 5999999 9999999999997653 246999999975 899999999986432
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+.+ ..++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 104 ~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 104 RGMPKAEIEERVAEAARILELEPLLDR-KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 222 2346789999999887765 78999999999999999999999999999999999999999999888754
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||.+++..+||++++|++|+++. .|+++++.
T Consensus 183 ~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~~~~ 223 (356)
T PRK11650 183 RLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPVEVY 223 (356)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHH
Confidence 5799999999999999999999999999975 56766553
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=259.10 Aligned_cols=176 Identities=24% Similarity=0.332 Sum_probs=147.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-- 70 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~-- 70 (211)
+..|+-+.+++-=. ++||+|+ |+|+..|++|+|..++ ++.||+|||+.. +||.+||.+|+.+...
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA--LFPHltV~~NVafGLk~~ 105 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYA--LFPHMTVEENVAFGLKVR 105 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcc--cCCCCcHHHHhhhhhhhc
Confidence 34556667773333 4999999 9999999999998653 567999999975 9999999999874322
Q ss_pred --CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH----
Q psy2681 71 --LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---- 140 (211)
Q Consensus 71 --~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~---- 140 (211)
.. .+++.++++.++++++.++ ++.+|||||||||+|||||+.+|++||||||.++||..-+..+...++
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R-~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADR-KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhh-ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 12 2367889999999998876 789999999999999999999999999999999999988877766665
Q ss_pred hcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 141 NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 141 ~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.+.|.|+||||.+++..++|||++|++|++.. .|+++++..
T Consensus 185 ~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q-~gtP~eiY~ 226 (352)
T COG3842 185 ELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ-VGTPEEIYE 226 (352)
T ss_pred hcCCeEEEEECCHHHHhhhccceEEccCCceee-cCCHHHHhh
Confidence 457899999999999999999999999999975 577666543
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=258.60 Aligned_cols=174 Identities=25% Similarity=0.360 Sum_probs=147.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-. ++|||++ |+|+++|++|+|..++ +..++|+||++. +++.+|+.+|
T Consensus 15 ~i~~Gei~~l~-G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~--l~~~~TV~eN 91 (363)
T TIGR01186 15 AIAKGEIFVIM-GLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA--LFPHMTILQN 91 (363)
T ss_pred EEcCCCEEEEE-CCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc--CCCCCCHHHH
Confidence 35678888888 554 5999999 9999999999997543 347999999875 8899999999
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+++.++++.+||+.+.++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~ 170 (363)
T TIGR01186 92 TSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQD 170 (363)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 8632 2232 2456789999999877765 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.++ +.|||+||||++++.++||++++|++|+++. .|+++++
T Consensus 171 ~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei 217 (363)
T TIGR01186 171 ELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEI 217 (363)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHH
Confidence 98754 5799999999999999999999999999875 5666554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=234.93 Aligned_cols=159 Identities=29% Similarity=0.414 Sum_probs=138.3
Q ss_pred ecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CCC
Q psy2681 13 LQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP 72 (211)
Q Consensus 13 i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~~ 72 (211)
+.|.- ++|||+| |.+..+|++|+|+.+. +++||+|||+.. +.+..|++||++... +.+
T Consensus 33 l~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r--LL~~~tvyeNVA~pL~v~G~~ 110 (223)
T COG2884 33 LTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR--LLPDRTVYENVALPLRVIGKP 110 (223)
T ss_pred EECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc--ccccchHhhhhhhhhhccCCC
Confidence 34653 5999999 9999999999998542 678999999975 889999999987432 222
Q ss_pred ----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 73 ----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 73 ----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
.+++.++|+.+||.+.... .|.+|||||||||+||||++++|++||.||||.+|||.....+++++.++ |.|
T Consensus 111 ~~~i~~rV~~~L~~VgL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtT 189 (223)
T COG2884 111 PREIRRRVSEVLDLVGLKHKARA-LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189 (223)
T ss_pred HHHHHHHHHHHHHHhccchhhhc-CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcE
Confidence 3456789999999987775 78999999999999999999999999999999999999999999988765 679
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCceeee
Q psy2681 146 VILVSHDERLIRETDCELWALEKKNIRKF 174 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~i~~~ 174 (211)
|+++|||.+.+..+..|++.+++|+++..
T Consensus 190 Vl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 190 VLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred EEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999999999999754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=238.26 Aligned_cols=181 Identities=26% Similarity=0.371 Sum_probs=150.7
Q ss_pred eeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---hcCCCH
Q psy2681 10 IAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY 73 (211)
Q Consensus 10 ~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~~~~~ 73 (211)
|.-+.|.+ ++||+++ |++++.|++|.|..++ +++||.++.... +|..+|+.||+.. +++...
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~g--lY~RlT~rEnl~~Fa~L~~l~~ 107 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERG--LYARLTARENLKYFARLNGLSR 107 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcC--hhhhhhHHHHHHHHHHHhhhhh
Confidence 34444776 5999999 9999999999998642 568999996544 8999999998864 344433
Q ss_pred ----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeE
Q psy2681 74 ----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGV 146 (211)
Q Consensus 74 ----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ti 146 (211)
.+..++.+.|++.++.++ ++.+||.||||||+|||||+++|++++|||||||||..+...+.+++++. +.+|
T Consensus 108 ~~~kari~~l~k~l~l~~~~~r-Rv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~v 186 (245)
T COG4555 108 KEIKARIAELSKRLQLLEYLDR-RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186 (245)
T ss_pred hHHHHHHHHHHHHhChHHHHHH-HHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEE
Confidence 456678999999999886 78999999999999999999999999999999999999999999999876 5699
Q ss_pred EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHH-HHHHhhhhhh
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK-LLTSLGEAMV 194 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~-~~~~~~~~~~ 194 (211)
|++||++.+++.+||+++++++|.++ +.|+.+.+... ..+.+..+|.
T Consensus 187 iFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~~~~~le~~f~ 234 (245)
T COG4555 187 IFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDARTVLRNLEEIFA 234 (245)
T ss_pred EEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHHhhcCHHHHHH
Confidence 99999999999999999999999997 57888776543 3444444443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=257.38 Aligned_cols=170 Identities=24% Similarity=0.335 Sum_probs=143.5
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CC
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL 71 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~ 71 (211)
|+-+-++ |=. ++||||| |+|+..|++|+|...+ .+.|++|||+.. +||.+||++|+.... +.
T Consensus 29 Gef~vll-GPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA--LyPhmtV~~Niaf~Lk~~~~ 105 (338)
T COG3839 29 GEFVVLL-GPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA--LYPHMTVYENIAFGLKLRGV 105 (338)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCcc--ccCCCcHHHHhhhhhhhCCC
Confidence 4445555 442 4999999 9999999999998643 457999999975 999999999997432 22
Q ss_pred C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cC
Q psy2681 72 P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQ 143 (211)
Q Consensus 72 ~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~ 143 (211)
+ .++++++.+.+++++++++ ++.+|||||||||+||||++.+|+++|||||+|+||...+..+...|++ ++
T Consensus 106 ~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~ 184 (338)
T COG3839 106 PKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG 184 (338)
T ss_pred chHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC
Confidence 2 4567889999999999886 7899999999999999999999999999999999999998887777765 46
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|+|+||||..++..++|++++|++|++... |++.++
T Consensus 185 ~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~-g~p~el 221 (338)
T COG3839 185 TTTIYVTHDQVEAMTLADRIVVMNDGRIQQV-GTPLEL 221 (338)
T ss_pred CcEEEEcCCHHHHHhhCCEEEEEeCCeeeec-CChHHH
Confidence 7999999999999999999999999999764 555544
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=242.94 Aligned_cols=166 Identities=26% Similarity=0.382 Sum_probs=140.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~ 102 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHR--LLSDRTVYDNVA 102 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcc--ccccccHHHHHH
Confidence 466788888884443 5999999 9999999999997643 136899999874 778889999875
Q ss_pred hh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 103 FPLRIIGVPPRDANERVSAALEKVGLEGKAHA-LPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 32 1222 2356788999999877664 78999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
+++ +.|||+||||++++..+||++++|++|++
T Consensus 182 ~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 182 EEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 876 57999999999999999999999999864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=255.91 Aligned_cols=177 Identities=25% Similarity=0.285 Sum_probs=149.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
++..|..+.+++--. ++|||++ |+|+++|++|+|..++ +..+||+||++. +++.+|+.+++..
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~--~~~~~tv~e~l~~~~~ 140 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDN--LDLEFTVRENLLVFGR 140 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCcc--CCCCCcHHHHHHHHHH
Confidence 467788899994443 5999999 9999999999998643 346999999875 7788999998753
Q ss_pred hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++.. ...+.++++.+++.+..++ ++.+|||||||||+||+||+++|+++||||||+|||+.++..++++|+++
T Consensus 141 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~-~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 141 YFGMSTREIEAVIPSLLEFARLESKADA-RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhCC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 23332 2345678999999877665 78999999999999999999999999999999999999999999999875
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++||+++++.++||++++|++|+++ +.|+.+++.+
T Consensus 220 ~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~ 261 (340)
T PRK13536 220 ARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALID 261 (340)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 579999999999999999999999999986 4677776643
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=256.84 Aligned_cols=176 Identities=23% Similarity=0.298 Sum_probs=149.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
++..|..+.+++--. ++|||++ |+|+.+|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~ 103 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA--LFPNLTVADNIAYGLKN 103 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--cCCCCcHHHHHHHHHHh
Confidence 456788888884333 5999999 9999999999998643 346999999975 899999999986432
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+.+ ..++.++++.+||++..++ ++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|+++
T Consensus 104 ~~~~~~~~~~~~~~~l~~l~L~~~~~~-~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 104 RGMGRAEVAERVAELLDLVGLPGSERK-YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 222 2457789999999987765 78999999999999999999999999999999999999999999988764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||.+++..+||++++|++|+++. .|+.+++.
T Consensus 183 ~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~-~g~~~~~~ 223 (353)
T TIGR03265 183 RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ-VGTPQEIY 223 (353)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 56665543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=256.06 Aligned_cols=176 Identities=22% Similarity=0.314 Sum_probs=148.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..+. ++++||+||++. +|+.+|+.+|+....
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~--lfp~~tv~eNi~~~l~~ 105 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA--LFPHMSLGENVGYGLKM 105 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcc--cCCCCCHHHHHHHHHhH
Confidence 356678888884443 5999999 9999999999997643 357999999975 899999999987432
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||++||+.++.++.+.|+++
T Consensus 106 ~~~~~~~~~~~v~~~l~~~gl~~~~~r-~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 106 LGVPKEERKQRVKEALELVDLAGFEDR-YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ 184 (351)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 222 2456789999999887765 78999999999999999999999999999999999999999999988754
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||.+++..+||++++|++|+++. .|+++++.
T Consensus 185 ~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~~ 225 (351)
T PRK11432 185 QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQELY 225 (351)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 56766543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=250.67 Aligned_cols=176 Identities=25% Similarity=0.299 Sum_probs=147.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||++|++. +++.+|+.+++..
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~ 103 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN--LDPEFTVRENLLVFGR 103 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEecccc--CCcCCcHHHHHHHHHH
Confidence 467788999994443 5999999 9999999999997643 346999999875 6788999998753
Q ss_pred hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++... ..+.++++.+++.+..++ ++.+|||||||||+||+||+.+|+++||||||+|||+.++..+++.|+++
T Consensus 104 ~~~~~~~~~~~~~~~ll~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 104 YFGMSTREIEAVIPSLLEFARLESKADV-RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhHhcC-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 222322 245678999999876664 78999999999999999999999999999999999999999999999876
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 183 ~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 223 (303)
T TIGR01288 183 ARGKTILLTTHFMEEAERLCDRLCVLESGRKIA-EGRPHALI 223 (303)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 5799999999999999999999999999864 57766653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=239.16 Aligned_cols=167 Identities=28% Similarity=0.363 Sum_probs=140.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++...
T Consensus 22 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~ 98 (213)
T cd03259 22 TVEPGEFLALL-GPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYA--LFPHLTVAENIAFGLK 98 (213)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchh--hccCCcHHHHHHhHHH
Confidence 35567888888 654 5999999 9999999999997643 236999999875 67788999987532
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.. .+.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 177 (213)
T cd03259 99 LRGVPKAEIRARVRELLELVGLEGLLNR-YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177 (213)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1222 2346778999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++.++||++++|++|+++.
T Consensus 178 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 178 RELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred HHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 5699999999999999999999999998853
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=240.76 Aligned_cols=174 Identities=28% Similarity=0.371 Sum_probs=145.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+++.|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++..
T Consensus 22 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~~~l~~ 98 (236)
T cd03219 22 SVRPGEIHGLI-GPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR--LFPELTVLENVMV 98 (236)
T ss_pred EecCCcEEEEE-CCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc--cccCCCHHHHHHH
Confidence 46778889999 554 5999999 9999999999997542 235999999875 7888899998753
Q ss_pred hc---CC----------C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 68 LF---NL----------P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 68 ~~---~~----------~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.. .. . .+.+.++++.+|++...++ ++.+|||||||||+||||++.+|+++||||||+|||+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 177 (236)
T cd03219 99 AAQARTGSGLLLARARREEREARERAEELLERVGLADLADR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPE 177 (236)
T ss_pred HHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 21 11 0 2245678999999876664 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++..+||++++|++|+++. .++.+++
T Consensus 178 ~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 230 (236)
T cd03219 178 ETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPDEV 230 (236)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHHHh
Confidence 999999999765 4699999999999999999999999999864 5665544
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=236.19 Aligned_cols=167 Identities=26% Similarity=0.326 Sum_probs=139.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|..+. +..++|++|++.. .+...|+.+++....
T Consensus 22 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~-~~~~~tv~e~l~~~~~~ 99 (205)
T cd03226 22 DLYAGEIIALT-GKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDY-QLFTDSVREELLLGLKE 99 (205)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhh-hhhhccHHHHHhhhhhh
Confidence 35667888888 554 5999999 9999999999997654 2369999998631 233569999885321
Q ss_pred -CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
.....++.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (205)
T cd03226 100 LDAGNEQAETVLKDLDLYALKER-HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178 (205)
T ss_pred cCccHHHHHHHHHHcCCchhcCC-CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 2223467889999999877664 78999999999999999999999999999999999999999999999876 569
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 146 VILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
||++|||++++..+||++++|++|+++
T Consensus 179 ii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 179 VIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=240.05 Aligned_cols=174 Identities=24% Similarity=0.278 Sum_probs=144.8
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh--
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK-- 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~-- 67 (211)
+.++.|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~ 98 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLS--VDDELTGWENLYIHA 98 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCcc--ccccCcHHHHHHHHH
Confidence 4567788899994443 5999999 9999999999997643 236999999874 6778899988753
Q ss_pred -hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 68 -LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 68 -~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.++.. .+.+.++++.+++.+..++ ++.+||||||||++||+|++.+|+++||||||+|||+.++..+.+.|.++
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 99 RLYGVPGAERRERIDELLDFVGLLEAADR-LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 22222 2346788999999876654 78999999999999999999999999999999999999999999998764
Q ss_pred ----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 143 ----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 143 ----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
+.|||++|||++++..+|+++++|++|+++. .++.+
T Consensus 178 ~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 217 (220)
T cd03265 178 KEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTPE 217 (220)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCChH
Confidence 5699999999999999999999999999864 45543
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=254.96 Aligned_cols=176 Identities=20% Similarity=0.270 Sum_probs=148.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCc--ceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNK--GELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~--G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++ |+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 27 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~--l~p~~tv~enl~~~l 104 (362)
T TIGR03258 27 EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYA--LFPHLKVEDNVAFGL 104 (362)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcc--cCCCCcHHHHHHHHH
Confidence 356677888884333 5999999 999999999 9997643 246999999975 899999999986422
Q ss_pred ---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 70 ---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 70 ---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
+.+ ..++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 105 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 105 RAQKMPKADIAERVADALKLVGLGDAAAH-LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 222 2356789999999987765 88999999999999999999999999999999999999999999988653
Q ss_pred -----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 -----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 -----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 184 ~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~~~~ 227 (362)
T TIGR03258 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQALY 227 (362)
T ss_pred HHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 5699999999999999999999999999975 57766554
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=254.10 Aligned_cols=175 Identities=26% Similarity=0.293 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
+++.|..+.+++--. ++|||++ |+|+++|++|+|..++ ++.++|+||++. +++.+|+.+|+....
T Consensus 24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~--l~p~~tv~eni~~~~~~ 101 (353)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA--LFRHMTVFDNIAFGLTV 101 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcc--cCCCCcHHHHHHhhhhh
Confidence 456788888884443 5999999 9999999999997643 246999999975 889999999986421
Q ss_pred -----CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 70 -----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 70 -----~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
..+ .+++.++++.+++++..++ ++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 180 (353)
T PRK10851 102 LPRRERPNAAAIKAKVTQLLEMVQLAHLADR-YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180 (353)
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 112 2356789999999887765 789999999999999999999999999999999999999999999887
Q ss_pred hc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|+|+||||++++..+||++++|++|+++. .|+.+++
T Consensus 181 ~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~~~i 224 (353)
T PRK10851 181 QLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTPDQV 224 (353)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 64 5699999999999999999999999999975 5666654
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=240.70 Aligned_cols=177 Identities=23% Similarity=0.284 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~ 100 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN--LIERLSVLENVL 100 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCc--ccccCcHHHHHH
Confidence 456788888884443 5999999 9999999999997542 235999999875 677889999875
Q ss_pred hhc-----------CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 67 KLF-----------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 67 ~~~-----------~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
... +. ..+.+.++++.+++....++ ++.+|||||||||+||||++.+|+++||||||+|||+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 179 (241)
T cd03256 101 SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179 (241)
T ss_pred hhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 211 11 12346678999999876654 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 132 IDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 132 ~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+..+.+.|+++ +.|||++|||++++..+||++++|.+|+++. .++.+++.+
T Consensus 180 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 234 (241)
T cd03256 180 SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAELTD 234 (241)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHhhH
Confidence 99999999764 5699999999999999999999999999864 577666543
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=248.03 Aligned_cols=177 Identities=25% Similarity=0.375 Sum_probs=150.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|...+ +..+||+||++. +++.+|+.+++..
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~--l~~~~tv~e~l~~~~~ 101 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP--LYLDMYVREYLQFIAG 101 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCC--CCCCCcHHHHHHHHHH
Confidence 456788888884443 5999999 9999999999997643 246999999875 7888999998753
Q ss_pred hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++.. .+.+.++++.+|+.+..++ +++.||||||||++||+||+++|+++||||||+|||+.++..+++.|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 102 IYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcC-chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 23333 2456789999999877664 78999999999999999999999999999999999999999999999887
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++||+++++.++||++++|++|+++ +.|+.+++..
T Consensus 181 ~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (301)
T TIGR03522 181 KDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSA 221 (301)
T ss_pred CCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHH
Confidence 569999999999999999999999999997 4688777644
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=255.07 Aligned_cols=174 Identities=23% Similarity=0.324 Sum_probs=147.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
+..|..+.++ |-. ++|||++ |+|+.+|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 37 i~~Ge~~~Ll-GpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~ 113 (375)
T PRK09452 37 INNGEFLTLL-GPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYA--LFPHMTVFENVAFGLRM 113 (375)
T ss_pred EeCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--cCCCCCHHHHHHHHHhh
Confidence 4567788888 554 5999999 9999999999997543 346999999975 899999999986422
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+.+ ..++.++++.+|+++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 114 QKTPAAEITPRVMEALRMVQLEEFAQR-KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 222 2346788999999987775 78999999999999999999999999999999999999999999998764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||.+++..++|++++|++|+++. .|++.++.
T Consensus 193 ~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~i~ 233 (375)
T PRK09452 193 KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ-DGTPREIY 233 (375)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 46665543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=252.47 Aligned_cols=174 Identities=23% Similarity=0.326 Sum_probs=147.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
++..|..+.++ |-+ ++|||++ ++|+++|++|+|..++ +..+||+||++. +++.+|+.+++
T Consensus 27 ~i~~Gei~~ii-G~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~--l~~~~tv~eni 103 (343)
T PRK11153 27 HIPAGEIFGVI-GASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFN--LLSSRTVFDNV 103 (343)
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCc--cCCCCcHHHHH
Confidence 46778889999 664 5999999 9999999999997542 246999999875 78889999988
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+... +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~ 182 (343)
T PRK11153 104 ALPLELAGTPKAEIKARVTELLELVGLSDKADR-YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 532 23222 346778999999877664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++
T Consensus 183 L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~-~g~~~~~ 228 (343)
T PRK11153 183 LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE-QGTVSEV 228 (343)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9865 5699999999999999999999999999864 5665554
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=237.70 Aligned_cols=167 Identities=26% Similarity=0.307 Sum_probs=141.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~ 70 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++... .+
T Consensus 26 ~i~~G~~~~i~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~ 102 (220)
T cd03293 26 SVEEGEFVALV-GPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDA--LLPWLTVLDNVALGLELQG 102 (220)
T ss_pred EEeCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccc--cccCCCHHHHHHHHHHHcC
Confidence 46678888888 554 5999999 9999999999998643 346999999875 67778999987532 22
Q ss_pred CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----
Q psy2681 71 LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142 (211)
Q Consensus 71 ~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---- 142 (211)
.. .+.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|+++
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~ 181 (220)
T cd03293 103 VPKAEARERAEELLELVGLSGFENA-YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 22 2346788999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred CCeEEEEecChHHHHhhCCeEEEEe--CCceee
Q psy2681 143 QGGVILVSHDERLIRETDCELWALE--KKNIRK 173 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l~--~g~i~~ 173 (211)
+.|||++|||++++..+||++++|+ +|+++.
T Consensus 182 ~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 182 GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 5699999999999999999999999 688764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=254.33 Aligned_cols=174 Identities=19% Similarity=0.250 Sum_probs=146.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. ++.+||+||++. +++.+|+.+++....
T Consensus 25 ~i~~Ge~~~l~-G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~--l~~~~tv~eni~~~~~ 101 (369)
T PRK11000 25 DIHEGEFVVFV-GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYA--LYPHLSVAENMSFGLK 101 (369)
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcc--cCCCCCHHHHHHhHHh
Confidence 45667888888 554 5999999 9999999999997643 246999999975 788999999986421
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~lgL~~~~~~-~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~ 180 (369)
T PRK11000 102 LAGAKKEEINQRVNQVAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (369)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 222 2346788999999877664 78999999999999999999999999999999999999999999888764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|+|+||||++++..+||++++|++|+++. .|+.+++
T Consensus 181 ~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g~~~~i 221 (369)
T PRK11000 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLEL 221 (369)
T ss_pred HHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 5799999999999999999999999999975 5666654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=240.89 Aligned_cols=176 Identities=24% Similarity=0.304 Sum_probs=145.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++.+|+.+++
T Consensus 24 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l 100 (243)
T TIGR02315 24 NINPGEFVAII-GPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYN--LIERLTVLENV 100 (243)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCc--ccccccHHHHH
Confidence 35677888888 554 5999999 9999999999997542 235999999875 67788999987
Q ss_pred Hhhc-----------CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 66 MKLF-----------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 66 ~~~~-----------~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.... +. ..+++.++++.+|+....++ ++.+|||||||||+|||||+.+|+++||||||+|||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 179 (243)
T TIGR02315 101 LHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179 (243)
T ss_pred hhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 5211 00 12346778999999876664 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++.+
T Consensus 180 ~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 235 (243)
T TIGR02315 180 TSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGAPSELDD 235 (243)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCCHHHhCh
Confidence 999999999765 5699999999999999999999999999864 577665533
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=262.34 Aligned_cols=178 Identities=35% Similarity=0.623 Sum_probs=153.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC---------
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--------- 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~--------- 70 (211)
.+..|.|+.+| |-+ ++|||+| |+|...|++|+|......+++|++|++. +++..|+.+.+.....
T Consensus 25 ~~~~G~riGLv-G~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~~~~tv~~~v~~~~~~~~~~~~~~ 101 (530)
T COG0488 25 TLNPGERIGLV-GRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP--LDPEKTVLDYVIEGFGELRELLAEL 101 (530)
T ss_pred eeCCCCEEEEE-CCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC--cCCCccHHHHHHhhhHHHHHHHHHH
Confidence 35678999999 665 5999999 9999999999999888789999999975 5667788776532100
Q ss_pred ------C----------------------CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeC
Q psy2681 71 ------L----------------------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 122 (211)
Q Consensus 71 ------~----------------------~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDE 122 (211)
. .+.++..++..+|+... + +++++||||||.||+||+||+.+|++|||||
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~-~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDE 179 (530)
T COG0488 102 EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D-RPVSSLSGGWRRRVALARALLEEPDLLLLDE 179 (530)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c-CchhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 01345567888999876 4 4899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHH
Q psy2681 123 PTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 185 (211)
Q Consensus 123 Pt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~ 185 (211)
|||+||.++..|+.++|+++.+|+|+||||.+|+.++|++|+.+++|++..|.|+|+.|.+..
T Consensus 180 PTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 180 PTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQK 242 (530)
T ss_pred CCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHHH
Confidence 999999999999999999998899999999999999999999999999999999999886543
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=235.57 Aligned_cols=167 Identities=29% Similarity=0.383 Sum_probs=142.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-+ ++|||++ ++|+.+|++|+|..+. +..++|++|++. +++..|+.+++...
T Consensus 22 ~i~~G~~~~i~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~ 98 (208)
T cd03268 22 HVKKGEIYGFL-GPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPG--FYPNLTARENLRLLAR 98 (208)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCc--cCccCcHHHHHHHHHH
Confidence 45677888888 554 5999999 9999999999998754 235999999864 67889999987532
Q ss_pred -cCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CC
Q psy2681 69 -FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QG 144 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ 144 (211)
+.....++.++++.+++.+..++ ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|+++ +.
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 177 (208)
T cd03268 99 LLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGI 177 (208)
T ss_pred hcCCcHHHHHHHHHHcCCHHHHhh-hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 23345567889999999876664 78999999999999999999999999999999999999999999999764 57
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|||++|||++++.++||++++|++|+++.
T Consensus 178 tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 178 TVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred EEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=254.04 Aligned_cols=176 Identities=22% Similarity=0.316 Sum_probs=146.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
++..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~ 118 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA--LFPHMTVEQNIAFGLKQ 118 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCc--cCCCCCHHHHHHHHHHH
Confidence 456778888884443 5999999 9999999999997643 346999999975 899999999986422
Q ss_pred -CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh---
Q psy2681 70 -NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--- 141 (211)
Q Consensus 70 -~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~--- 141 (211)
+.+ .+++.++++.+++.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++
T Consensus 119 ~~~~~~~~~~~v~~~l~~l~L~~~~~~-~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 119 DKLPKAEIASRVNEMLGLVHMQEFAKR-KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 222 2356788999999887765 7899999999999999999999999999999999999999988866654
Q ss_pred -cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 -YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 -~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+.|+|+||||.+++..++|++++|++|+++. .|+.+++.
T Consensus 198 ~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~~~ 238 (377)
T PRK11607 198 RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ-IGEPEEIY 238 (377)
T ss_pred hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-EcCHHHHH
Confidence 46799999999999999999999999999975 56665543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=238.95 Aligned_cols=175 Identities=25% Similarity=0.279 Sum_probs=144.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~--- 68 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.+++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~ 101 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYA--LFRHMTVFDNVAFGLRV 101 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCc--ccCCCCHHHHHhhhhhh
Confidence 467788888994443 5999999 9999999999997643 236999999875 67788999987532
Q ss_pred cCC----C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 69 FNL----P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 69 ~~~----~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
... . .+.+.++++.+|+....++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.++|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (239)
T cd03296 102 KPRSERPPEAEIRAKVHELLKLVQLDWLADR-YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 180 (239)
T ss_pred ccccccCCHHHHHHHHHHHHHHcCChhhhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 111 1 1345678999999876654 789999999999999999999999999999999999999999999997
Q ss_pred hc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++.+.++||++++|++|+++. .++.+++
T Consensus 181 ~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 224 (239)
T cd03296 181 RLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ-VGTPDEV 224 (239)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHH
Confidence 64 5699999999999999999999999999864 5665554
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=235.69 Aligned_cols=169 Identities=20% Similarity=0.238 Sum_probs=142.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
+++..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++.+|+.+++.....
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~ 96 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN--LFAHLTVEQNVGLGLS 96 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccc--cCCCCcHHHHHhcccc
Confidence 4567788899994443 5999999 9999999999997643 235999999875 6788899998853211
Q ss_pred ----C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 71 ----L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 71 ----~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
. ....+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKR-LPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred cccCccHHHHHHHHHHHHHcCCHHHHhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1 13356788999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++.++||++++|++|+++.
T Consensus 176 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 176 AETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 5699999999999999999999999999853
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=254.19 Aligned_cols=175 Identities=24% Similarity=0.296 Sum_probs=148.5
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------------CeEEEEEeCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------------RLRIGKFDQHSGEHLFPDD 59 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------------~~~ig~v~q~~~~~l~~~~ 59 (211)
+++..|....++ |.. ++|||++ |+|+++|++|+|..++ +.+++|+||++. +++..
T Consensus 45 f~i~~Gei~~I~-G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~--l~p~~ 121 (382)
T TIGR03415 45 LDIEEGEICVLM-GLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA--LMPWL 121 (382)
T ss_pred EEEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc--CCCCC
Confidence 456778888888 664 5999999 9999999999997643 136999999975 78889
Q ss_pred CHHHHHHhhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 60 TPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 60 t~~e~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
|+.+|+.... +.. ..++.++++.+||.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 122 Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 122 TVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 9999986321 222 2356789999999877665 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.+.|.++ +.|||+||||++++.++||++++|++|+++. .|+.+++
T Consensus 201 ~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~~ei 252 (382)
T TIGR03415 201 TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTPEEI 252 (382)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 9999998754 5799999999999999999999999999975 5676655
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=255.40 Aligned_cols=183 Identities=22% Similarity=0.277 Sum_probs=151.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ ++++||++|++. +++.+|+.+++...
T Consensus 25 ~i~~Geiv~li-GpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~--l~~~~tv~e~v~~~ 101 (402)
T PRK09536 25 SVREGSLVGLV-GPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS--LSFEFDVRQVVEMG 101 (402)
T ss_pred EECCCCEEEEE-CCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCC--CCCCCCHHHHHHhc
Confidence 46778889999 655 5999999 9999999999997543 346999999875 67789999987531
Q ss_pred c-------C-CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-------N-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-------~-~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. . .. .+.+.++++.+|+.+..++ ++.+||||||||++|||||+++|++|||||||+|||+.++..+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~ 180 (402)
T PRK09536 102 RTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180 (402)
T ss_pred cchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 1 1 11 2356789999999877664 899999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhh
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLG 190 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~ 190 (211)
+|+++ +.|||++|||++++.++|+++++|++|+++. .|+.+++.. ..+...+
T Consensus 181 lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~ev~~~~~l~~~~ 236 (402)
T PRK09536 181 LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPADVLTADTLRAAF 236 (402)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHhCcHHHHHHh
Confidence 99875 4699999999999999999999999999975 677776543 3444444
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=235.32 Aligned_cols=165 Identities=27% Similarity=0.351 Sum_probs=136.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC---
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--- 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~--- 70 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++........|+.+++.....
T Consensus 21 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~ 99 (213)
T cd03235 21 EVKPGEFLAIV-GPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHK 99 (213)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccc
Confidence 45678888888 554 5999999 9999999999998765 346999999875211234799998753211
Q ss_pred -----C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 71 -----L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 71 -----~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
. ..+.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 100 GLFRRLSKADKAKVDEALERVGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCHHHHhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0 12346778999999866654 78999999999999999999999999999999999999999999999875
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+.|||++|||++++.++||++++|++|
T Consensus 179 ~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 179 RREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 469999999999999999999999875
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=253.48 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=146.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..+||++|++. +++.+|+.++
T Consensus 50 ~i~~Gei~~Lv-G~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--l~~~~Tv~en 126 (400)
T PRK10070 50 AIEEGEIFVIM-GLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--LMPHMTVLDN 126 (400)
T ss_pred EEcCCCEEEEE-CCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc--CCCCCCHHHH
Confidence 56778888888 665 5999999 9999999999997542 136999999875 7888999998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+++.++++.+||.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 127 l~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~ 205 (400)
T PRK10070 127 TAFGMELAGINAEERREKALDALRQVGLENYAHS-YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQD 205 (400)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 8632 2222 2346778999999877665 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|.++ +.|||+||||++++.++||++++|++|+++. .|+.+++
T Consensus 206 ~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~-~g~~~~l 252 (400)
T PRK10070 206 ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ-VGTPDEI 252 (400)
T ss_pred HHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe-cCCHHHH
Confidence 98754 5699999999999999999999999999864 5665554
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=249.37 Aligned_cols=176 Identities=19% Similarity=0.279 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ +.+++|+||++...+++.+|+.+++.
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~ 122 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIA 122 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHH
Confidence 467788899994443 5999999 9999999999997532 24699999997434788899999875
Q ss_pred hh---c--CCCH----HHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 67 KL---F--NLPY----EKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 67 ~~---~--~~~~----~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. + +... +.+.++++.+|+.. ..+ +++.+|||||||||+|||||+.+|++||+||||++||+.++..+.
T Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~-~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~ 201 (331)
T PRK15079 123 EPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV 201 (331)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 31 1 2232 34567899999954 444 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++|+++ +.|+|+||||++++.++||++++|.+|++++ .|+.++
T Consensus 202 ~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive-~g~~~~ 248 (331)
T PRK15079 202 NLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE-LGTYDE 248 (331)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence 998764 5699999999999999999999999999975 455544
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=234.22 Aligned_cols=166 Identities=27% Similarity=0.367 Sum_probs=139.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..+ ++.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 22 ~i~~g-~~~i~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~ 97 (211)
T cd03264 22 TLGPG-MYGLL-GPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFG--VYPNFTVREFLDYIA 97 (211)
T ss_pred EEcCC-cEEEE-CCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCc--ccccCCHHHHHHHHH
Confidence 34556 77777 664 5999999 9999999999998654 346999999875 67788999887531
Q ss_pred --cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+.. .+.+.++++.+|+.+..+. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (211)
T cd03264 98 WLKGIPSKEVKARVDEVLELVNLGDRAKK-KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL 176 (211)
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCHHHHhC-chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 2222 2346778999999876654 78999999999999999999999999999999999999999999999876
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++.++++++++|++|+++.
T Consensus 177 ~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 177 GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred hCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 4799999999999999999999999998863
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=235.93 Aligned_cols=164 Identities=29% Similarity=0.393 Sum_probs=137.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.++
T Consensus 26 ~i~~G~~~~l~-G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~ 102 (218)
T cd03255 26 SIEKGEFVAIV-GPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN--LLPDLTALEN 102 (218)
T ss_pred EEcCCCEEEEE-cCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccc--cCCCCcHHHH
Confidence 35677888888 554 5999999 9999999999997532 236999999875 6788899998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+.+.++++.+|+....++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 181 (218)
T cd03255 103 VELPLLLAGVPKKERRERAEELLERVGLGDRLNH-YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181 (218)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-ChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHH
Confidence 7532 2222 2356789999999876654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
.|+++ +.|||+||||++++. +||++++|++|++
T Consensus 182 ~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 182 LLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99865 469999999999997 9999999999863
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=240.48 Aligned_cols=168 Identities=26% Similarity=0.270 Sum_probs=142.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY 73 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~~ 73 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|.... +..++|++|++. +++..|+.+++.... ....
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~ 111 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR--LLPWKKVIDNVGLGLKGQWR 111 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc--CCCCCcHHHHHHhcccchHH
Confidence 456788888884443 5999999 9999999999997643 346999999874 677789999986422 1124
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEE
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiiv 149 (211)
.++.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++ +.|||+|
T Consensus 112 ~~~~~~l~~~gl~~~~~~-~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviiv 190 (257)
T PRK11247 112 DAALQALAAVGLADRANE-WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190 (257)
T ss_pred HHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 567789999999876664 78999999999999999999999999999999999999999999998764 5799999
Q ss_pred ecChHHHHhhCCeEEEEeCCceee
Q psy2681 150 SHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|||++++..+|+++++|++|+++.
T Consensus 191 sHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 191 THDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=250.22 Aligned_cols=175 Identities=23% Similarity=0.321 Sum_probs=148.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-. ++|||++ |+|+++|++|+|..+. ++.++|+||++. +++.+|+.++
T Consensus 20 ~i~~Ge~~~l~-G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~en 96 (352)
T PRK11144 20 TLPAQGITAIF-GRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR--LFPHYKVRGN 96 (352)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcc--cCCCCcHHHH
Confidence 45678888888 554 5999999 9999999999997432 246999999875 7889999999
Q ss_pred HHhhc-CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 65 LMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 65 ~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
+.... ....+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|+++
T Consensus 97 l~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~ 175 (352)
T PRK11144 97 LRYGMAKSMVAQFDKIVALLGIEPLLDR-YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA 175 (352)
T ss_pred HHhhhhhhhHHHHHHHHHHcCCchhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 86422 2234567889999999877664 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 176 ~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~i~ 217 (352)
T PRK11144 176 REINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPLEEVW 217 (352)
T ss_pred HhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCHHHHH
Confidence 5699999999999999999999999999875 56666543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=235.81 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=145.7
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~ 98 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS--IFRKLTVEENILA 98 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc--ccccCcHHHHHHH
Confidence 3567888999994443 5999999 9999999999997542 135999999874 7788899998753
Q ss_pred h---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .... ...+.++++.+|+.+..++ ++.+||||||||++||||++.+|++|||||||+|||+.++..+.++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~ 177 (232)
T cd03218 99 VLEIRGLSKKEREEKLEELLEEFHITHLRKS-KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177 (232)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 2 1222 2345678999999876664 789999999999999999999999999999999999999999999987
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++.+.++|+++++|++|+++. .++.+++
T Consensus 178 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 220 (232)
T cd03218 178 ILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA-EGTPEEI 220 (232)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-EeCHHHh
Confidence 65 5699999999999999999999999999864 5666554
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=235.41 Aligned_cols=168 Identities=21% Similarity=0.299 Sum_probs=142.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~ 104 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTG--LYDRLTARENLEYFAG 104 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcc--cCcCCCHHHHHHHHHH
Confidence 456788888884443 5999999 9999999999997643 246999999974 77888999987532
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
++.. ...+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 105 LYGLKGDELTARLEELADRLGMEELLDR-RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHhh-hhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 2222 2346779999999876664 78999999999999999999999999999999999999999999999875
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++..+++++++|++|+++.
T Consensus 184 ~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 184 ALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 5699999999999999999999999999853
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=234.00 Aligned_cols=168 Identities=20% Similarity=0.282 Sum_probs=140.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~--- 68 (211)
.++.|..+.+++.-. ++|||++ ++|+++|++|+|.... +..++|++|++. +++..|+.+++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~ 99 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA--LYPHMTVYDNIAFGLKL 99 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChh--hccCCCHHHHHHHHHHh
Confidence 356788888994443 5999999 9999999999997542 236999999874 67788999987532
Q ss_pred cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 69 FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 69 ~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.+.. .+.+.++++.+|+.+..+. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDR-KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1222 2345678999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++..+|+++++|++|+++.
T Consensus 179 ~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 179 RLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred HcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 5699999999999999999999999999864
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=240.53 Aligned_cols=175 Identities=21% Similarity=0.308 Sum_probs=145.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.++
T Consensus 46 ~i~~Ge~~~l~-G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~ 122 (269)
T cd03294 46 DVREGEIFVIM-GLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA--LLPHRTVLEN 122 (269)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc--cCCCCcHHHH
Confidence 46678888888 554 5999999 9999999999997532 136999999875 6778899998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+.+.++++.+|+.+..++ ++.+||||||||++||||++.+|++|||||||+|||+.++..+.+
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~ 201 (269)
T cd03294 123 VAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQD 201 (269)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 7532 1222 2346678999999876664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|.++ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 202 ~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 249 (269)
T cd03294 202 ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGTPEEIL 249 (269)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHH
Confidence 98765 5699999999999999999999999999864 46665543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=235.92 Aligned_cols=174 Identities=25% Similarity=0.374 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++
T Consensus 27 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l 103 (233)
T cd03258 27 SVPKGEIFGII-GRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFN--LLSSRTVFENV 103 (233)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcc--cCCCCcHHHHH
Confidence 46678888888 554 5999999 9999999999997542 246999999975 67788999987
Q ss_pred Hhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.. ...+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~ 182 (233)
T cd03258 104 ALPLEIAGVPKAEIEERVLELLELVGLEDKADA-YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182 (233)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH
Confidence 532 2222 2346788999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||++||+++++.++||++++|++|+++. .++.+++
T Consensus 183 l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (233)
T cd03258 183 LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEEV 228 (233)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 9764 5699999999999999999999999999964 4665543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=247.24 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=145.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|.... +.+++|+||++...+++.+++.+++.
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 467788899995443 5999999 9999999999997542 24699999998545788889887764
Q ss_pred h---hc-CCC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 67 K---LF-NLP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 67 ~---~~-~~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .. ... .+++.++++.+||.. ..+ +++.+|||||||||+|||||+.+|++||+||||++||+.++..+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~ 195 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYD-RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN 195 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHCCCChHHhc-CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH
Confidence 2 11 222 235678999999964 444 4889999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+|+++ +.|||+||||+..+.++||++++|.+|++++ .|+.++
T Consensus 196 lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive-~g~~~~ 241 (327)
T PRK11308 196 LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE-KGTKEQ 241 (327)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 98764 5799999999999999999999999999976 455444
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=260.02 Aligned_cols=179 Identities=26% Similarity=0.506 Sum_probs=153.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc--CCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSR 77 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~ 77 (211)
+++.|.++.++ |-+ ++|||++ |+|+++|++|+|....+..+||++|++...+++.+|+.+++.... ....+.+.
T Consensus 341 ~i~~Ge~~~l~-G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 419 (530)
T PRK15064 341 LLEAGERLAII-GENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVR 419 (530)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHH
Confidence 56788899999 554 5999999 999999999999988878899999986433556789988875332 12345678
Q ss_pred HHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHH
Q psy2681 78 RQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 156 (211)
Q Consensus 78 ~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~ 156 (211)
++++.+|+. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.|+++++|||+||||++++
T Consensus 420 ~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 420 GTLGRLLFSQDDIK-KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred HHHHHcCCChhHhc-CcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 899999995 4544 48999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 157 RETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
..+|+++++|++|+++.+.|++.++.+
T Consensus 499 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 499 SSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999766788876643
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=233.26 Aligned_cols=168 Identities=26% Similarity=0.373 Sum_probs=142.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~ 70 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++... .+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~ 99 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG--LYPKMKVIDQLVYLAQLKG 99 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc--CCcCCcHHHHHHHHHHHcC
Confidence 456788888884443 5999999 9999999999998764 346999999874 67788999987532 22
Q ss_pred CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C
Q psy2681 71 LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---Q 143 (211)
Q Consensus 71 ~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~ 143 (211)
.. .+.+.++++.+|+....++ ++.+||||||||++||+|++.+|+++||||||+|||+.++..+.+.|+++ +
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~ 178 (210)
T cd03269 100 LKKEEARRRIDEWLERLELSEYANK-RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178 (210)
T ss_pred CChHHHHHHHHHHHHHcCChHHHhC-cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 22 2346778999999876664 78999999999999999999999999999999999999999999999865 4
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
.|||++|||.+++.++|+++++|.+|+++.
T Consensus 179 ~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 179 KTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 699999999999999999999999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=266.24 Aligned_cols=180 Identities=36% Similarity=0.611 Sum_probs=152.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCCHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQ 79 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~ 79 (211)
.+..|.++.+++--. ++|||++ |+|.++|++|+|......++||++|++...+++..++.+++.... ......+.++
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDY 413 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHH
Confidence 466789999994443 5999999 999999999999886666899999975323556667777654322 2234567889
Q ss_pred HHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHh
Q psy2681 80 LGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 80 l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 158 (211)
++.|++.. ..+ +++++|||||||||+||++++.+|++|||||||||||+.++..+.+.|.++++|||+||||++++..
T Consensus 414 L~~~~l~~~~~~-~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~ 492 (638)
T PRK10636 414 LGGFGFQGDKVT-EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRS 492 (638)
T ss_pred HHHcCCChhHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 99999964 444 4899999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hCCeEEEEeCCceeeecCChHHHHH
Q psy2681 159 TDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 159 ~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+|+++++|.+|+++.+.|++++|.+
T Consensus 493 ~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 493 TTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred hCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999778899998854
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=234.78 Aligned_cols=164 Identities=29% Similarity=0.390 Sum_probs=138.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++
T Consensus 24 ~i~~G~~~~l~-G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l 100 (214)
T TIGR02673 24 HIRKGEFLFLT-GPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFR--LLPDRTVYENV 100 (214)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChh--hccCCcHHHHH
Confidence 45678888888 554 5999999 9999999999997532 236999999875 67788999887
Q ss_pred Hhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.. ...+.++++.+++.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 179 (214)
T TIGR02673 101 ALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 532 1222 2356788999999876654 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
|+++ +.|||++|||++++..+||++++|++|+
T Consensus 180 l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 180 LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9865 5799999999999999999999998874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=240.17 Aligned_cols=176 Identities=23% Similarity=0.301 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~ 106 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGA--LFTDMNVFDNVA 106 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccc--cCCCCCHHHHHH
Confidence 467788899994443 5999999 9999999999997542 235999999864 677889999875
Q ss_pred hh---c-CCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL---F-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~---~-~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. . .... ..+.++++.+|+.+..++ ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (269)
T PRK11831 107 YPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185 (269)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 31 1 1222 245678999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||+||||++++.++|+++++|++|+++. .|+.+++.
T Consensus 186 l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 232 (269)
T PRK11831 186 ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA-HGSAQALQ 232 (269)
T ss_pred HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE-eCCHHHHh
Confidence 9865 4699999999999999999999999999864 56666554
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=244.95 Aligned_cols=177 Identities=29% Similarity=0.385 Sum_probs=145.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------------------------------CeEE
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------------------------------RLRI 44 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------------------------------~~~i 44 (211)
+.+..|..+.+++.-. ++|||++ |+|+++|++|+|.... +..+
T Consensus 28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 107 (305)
T PRK13651 28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRV 107 (305)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhce
Confidence 3567788999994443 5999999 9999999999987531 2358
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHhh---cCCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCC
Q psy2681 45 GKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPD 116 (211)
Q Consensus 45 g~v~q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~ 116 (211)
||+||++...++ ..|+.+++... .+.. .+++.++++.+||. +..+ +++.+|||||||||+||+||+.+|+
T Consensus 108 g~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGqkqrvalA~aL~~~P~ 185 (305)
T PRK13651 108 GVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-RSPFELSGGQKRRVALAGILAMEPD 185 (305)
T ss_pred EEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-CChhhCCHHHHHHHHHHHHHHhCCC
Confidence 999998743344 46999988532 1232 23467889999996 4555 4889999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 117 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 117 lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++. .|+..++
T Consensus 186 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~-~g~~~~~ 252 (305)
T PRK13651 186 FLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK-DGDTYDI 252 (305)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999765 5799999999999999999999999999864 5666554
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=242.42 Aligned_cols=177 Identities=26% Similarity=0.334 Sum_probs=144.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|...+ +..+||+||++...+ ...|+.+++..
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-~~~tv~e~l~~ 107 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL-FEETIEKDIAF 107 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc-ccccHHHHHHh
Confidence 467888999994443 5999999 9999999999996532 246999999874223 35799998853
Q ss_pred h---cCCCH----HHHHHHHHhCCCC--CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 68 L---FNLPY----EKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 68 ~---~~~~~----~~~~~~l~~~gl~--~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
. .+... +.+.++++.+||. +..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++.++.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~ 186 (287)
T PRK13637 108 GPINLGLSEEEIENRVKRAMNIVGLDYEDYKD-KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK 186 (287)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHcCCCchhhcc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 2 12332 3467889999997 4455 47899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||++|||++++..+||++++|++|+++. .|+..++.
T Consensus 187 l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13637 187 IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREVF 233 (287)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9764 5699999999999999999999999999874 57666543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=234.54 Aligned_cols=174 Identities=27% Similarity=0.313 Sum_probs=145.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
|.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.+++...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~ 100 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA--LFDELTVREHLRFYA 100 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCC--ccccCCHHHHHHHHH
Confidence 4677888899994443 6999999 9999999999997543 235899999864 67788999887532
Q ss_pred --cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+... +.+.++++.+++.+..++ ++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 179 (220)
T cd03263 101 RLKGLPKSEIKEEVELLLRVLGLTDKANK-RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHHhC-hhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 22222 346778999999876664 78999999999999999999999999999999999999999999999876
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
+.|||++|||++++.++||++++|++|+++. .++.+
T Consensus 180 ~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 217 (220)
T cd03263 180 RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQ 217 (220)
T ss_pred hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHH
Confidence 3699999999999999999999999999874 45544
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=264.94 Aligned_cols=178 Identities=34% Similarity=0.566 Sum_probs=154.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CC--C--HH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL--P--YE 74 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~--~--~~ 74 (211)
.+..|.++.++ |-+ ++|||++ |+|.++|++|+|.......+||++|++ ..+++.+|+.+++.... .. . ..
T Consensus 341 ~i~~Ge~~~l~-G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~ 418 (635)
T PRK11147 341 QVQRGDKIALI-GPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRPR 418 (635)
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc-cccCCCCCHHHHHHhhcccccccchHH
Confidence 46788999999 554 5999999 999999999999885555799999975 24778899999886421 11 1 34
Q ss_pred HHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 75 KSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 75 ~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
.+.++++.|++.. ..+ +++++|||||||||+||+|++.+|++|||||||||||+.++..+.++|+++++|||+||||+
T Consensus 419 ~~~~~l~~~~l~~~~~~-~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~ 497 (635)
T PRK11147 419 HVLGYLQDFLFHPKRAM-TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497 (635)
T ss_pred HHHHHHHhcCCCHHHHh-ChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCH
Confidence 5678899999964 344 48899999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHhhCCeEEEEe-CCceeeecCChHHHHH
Q psy2681 154 RLIRETDCELWALE-KKNIRKFNGDFDDYRE 183 (211)
Q Consensus 154 ~~~~~~~~~v~~l~-~g~i~~~~g~~~~~~~ 183 (211)
+++..+|++++++. +|++..|.|+|++|.+
T Consensus 498 ~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 498 QFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999998 8999999999999954
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=233.59 Aligned_cols=176 Identities=25% Similarity=0.292 Sum_probs=147.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++....
T Consensus 21 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~ 97 (232)
T PRK10771 21 TVERGERVAIL-GPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN--LFSHLTVAQNIGLGLN 97 (232)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccc--cccCCcHHHHHhcccc
Confidence 45678888888 554 5999999 9999999999997643 246999999874 777889999885321
Q ss_pred -C--CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 -N--LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 -~--~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
. .. ..++.++++.+|++...++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.++|.++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 98 PGLKLNAAQREKLHAIARQMGIEDLLAR-LPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred cccCCCHHHHHHHHHHHHHcCcHHHHhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1 11 2346788999999876664 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++|||++++.++|+++++|.+|+++ ..|+.+++..
T Consensus 177 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 177 QERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred HhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 569999999999999999999999999986 4677776654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=241.72 Aligned_cols=177 Identities=23% Similarity=0.280 Sum_probs=145.6
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||+||++.. .+...|+.+++...
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~e~l~~~ 104 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDD-QVFSSTVWDDVAFG 104 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhh-hhccCcHHHHHHhh
Confidence 3567888999994443 5999999 9999999999997643 2469999998632 23457999988632
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+.. ..++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 105 PVNMGLDKDEVERRVEEALKAVRMWDFRDK-PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 1222 2346778999999876664 7899999999999999999999999999999999999999999999976
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+ +.|||++|||++++.++||++++|++|+++. .|+.+.+
T Consensus 184 ~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 225 (274)
T PRK13647 184 LHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA-EGDKSLL 225 (274)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHh
Confidence 5 5799999999999999999999999999875 5665544
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=258.91 Aligned_cols=179 Identities=28% Similarity=0.450 Sum_probs=150.7
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc----------
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---------- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---------- 69 (211)
..+..|.++.+++--. ++|||++ |+|+++|++|+|.......+||++|++. +++.+|+.+++....
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~ 99 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFEEFTVLDTVIMGHTELWEVKQER 99 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--cCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 3567889999994443 5999999 9999999999999876678999999864 677888888764210
Q ss_pred ----C-------------------------CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEE
Q psy2681 70 ----N-------------------------LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 120 (211)
Q Consensus 70 ----~-------------------------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllL 120 (211)
. ....++.++++.+|+.....++++.+|||||||||+||+||+.+|++|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlL 179 (530)
T PRK15064 100 DRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLL 179 (530)
T ss_pred HHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 01234567899999976443347899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 121 DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 121 DEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
||||++||+.++.++.++|.+.+.|||+||||++++.++||++++|++|+++.+.|+++++.
T Consensus 180 DEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 180 DEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred cCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999999999888899999999999999999999999999865688887664
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=231.77 Aligned_cols=162 Identities=25% Similarity=0.299 Sum_probs=135.6
Q ss_pred CeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
..+.++ |-+ ++|||++ ++|+++|++|+|..+. +..++|++|++. +++.+|+.+++....
T Consensus 24 e~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~~ 100 (214)
T cd03297 24 EVTGIF-GASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA--LFPHLNVRENLAFGL 100 (214)
T ss_pred eeEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc--cCCCCCHHHHHHHHH
Confidence 556666 554 5999999 9999999999987532 235999999874 677889999875321
Q ss_pred CC-----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 NL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 ~~-----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.. ..+.+.++++.+|+....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (214)
T cd03297 101 KRKRNREDRISVDELLDLLGLDHLLNR-YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179 (214)
T ss_pred hhCCHHHHHHHHHHHHHHcCCHhHhhc-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 11 12356789999999876654 78999999999999999999999999999999999999999999999764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++..+|+++++|++|+++.
T Consensus 180 ~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 180 NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 5699999999999999999999999999853
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=232.23 Aligned_cols=165 Identities=30% Similarity=0.395 Sum_probs=136.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. ..++..|+.+++...
T Consensus 23 ~i~~G~~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-~~~~~~t~~~~l~~~ 100 (211)
T cd03225 23 TIKKGEFVLIV-GPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD-DQFFGPTVEEEVAFG 100 (211)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChh-hhcCCCcHHHHHHHH
Confidence 45678888888 554 5999999 9999999999997543 246899999863 124567999887532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+.. ...+.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 101 LENLGLPEEEIEERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1222 2346678999999866654 7899999999999999999999999999999999999999999999976
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+ +.|||++|||++++..+||++++|++|+
T Consensus 180 ~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 180 LKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 5 4699999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=234.82 Aligned_cols=174 Identities=24% Similarity=0.383 Sum_probs=144.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------------~~~ig~v~q~~~~~l~~~~t 60 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|
T Consensus 25 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t 101 (250)
T PRK11264 25 EVKPGEVVAII-GPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN--LFPHRT 101 (250)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc--cCCCCC
Confidence 46678888898 554 5999999 9999999999986431 236899999874 677789
Q ss_pred HHHHHHhh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 61 PCEYLMKL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 61 ~~e~~~~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+.+++... .... .+.+.++++.+|+....++ ++.+|||||||||+||||++.+|+++||||||+|||+.++
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 180 (250)
T PRK11264 102 VLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS-YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELV 180 (250)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhC-ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 99987531 1222 2346678999999876654 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.+.|.++ +.|||++|||++++.++|+++++|++|+++. .++.+++
T Consensus 181 ~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 231 (250)
T PRK11264 181 GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE-QGPAKAL 231 (250)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999998764 5699999999999999999999999999864 5666654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=247.87 Aligned_cols=175 Identities=22% Similarity=0.279 Sum_probs=145.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.++
T Consensus 19 ~i~~Gei~~l~-G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~en 95 (354)
T TIGR02142 19 TLPGQGVTAIF-GRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR--LFPHLSVRGN 95 (354)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCc--cCCCCcHHHH
Confidence 45667888888 554 5999999 9999999999996432 245999999875 7888999999
Q ss_pred HHhhc-CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 65 LMKLF-NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 65 ~~~~~-~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
+.... ... ..++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 96 LRYGMKRARPSERRISFERVIELLGIGHLLGR-LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred HHHHhhccChhHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 86321 111 2346789999999877664 78999999999999999999999999999999999999999999998
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 175 ~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 220 (354)
T TIGR02142 175 ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA-AGPIAEVW 220 (354)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHh
Confidence 764 5699999999999999999999999999864 56665543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=235.97 Aligned_cols=174 Identities=26% Similarity=0.386 Sum_probs=145.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++..|+.+++...
T Consensus 23 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~ 99 (242)
T cd03295 23 EIAKGEFLVLI-GPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIG--LFPHMTVEENIALV 99 (242)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcc--ccCCCcHHHHHHHH
Confidence 46678888888 554 5999999 9999999999997542 236899999874 77788999987532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCC--ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPS--YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~--~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.+.. .+.+.++++.+|+.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 100 PKLLKWPKEKIRERADELLALVGLDPAEFAD-RYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCcHHHHh-cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 1222 234678899999985 555 478999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+++ +.|||++||+.+++.++||++++|++|+++. .++.+++
T Consensus 179 ~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 179 KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 764 5699999999999999999999999999974 4665544
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=233.30 Aligned_cols=166 Identities=27% Similarity=0.385 Sum_probs=139.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~~~l~ 100 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR--LLPDRNVYENVA 100 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCch--hccCCcHHHHHH
Confidence 466788889994443 5999999 9999999999997542 235999999875 778889999875
Q ss_pred hh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.. .+++.++++.+|+++..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 101 FALEVTGVPPREIRKRVPAALELVGLSHKHRA-LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 32 1222 2346678999999876654 78999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
+++ +.|||++|||++++..+||++++|++|++
T Consensus 180 ~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 180 KKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 865 47999999999999999999999998863
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=237.15 Aligned_cols=176 Identities=23% Similarity=0.345 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHLF 56 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~ 56 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. ++
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~ 104 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--LW 104 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcc--cC
Confidence 466788899994443 5999999 9999999999996542 235999999875 67
Q ss_pred CCCCHHHHHHh----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q psy2681 57 PDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128 (211)
Q Consensus 57 ~~~t~~e~~~~----~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD 128 (211)
+.+|+.+++.. ..... ..++.++++.+|+......+++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 105 ~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (257)
T PRK10619 105 SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184 (257)
T ss_pred CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 78899998753 11222 23467889999998754234789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 129 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 129 ~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus 185 ~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 239 (257)
T PRK10619 185 PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQL 239 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 99999999998765 5799999999999999999999999999974 5776654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=234.08 Aligned_cols=176 Identities=22% Similarity=0.303 Sum_probs=146.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.++.|..+.+++.-. ++|||++ |+|.++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~ 101 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT--VFENLTVFENLELA 101 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc--cCCCCCHHHHHHHh
Confidence 456788888884443 6999999 9999999999997543 125999999864 78888999987532
Q ss_pred cC-----------C----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 69 FN-----------L----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 69 ~~-----------~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
.. . ....+.++++.+|+.+..++ ++.+|||||+|||+||||++.+|+++||||||+|||+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~ 180 (242)
T TIGR03411 102 LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR-LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE 180 (242)
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHH
Confidence 11 1 12346778999999876664 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 134 ALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 134 ~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+.+.|+++ +.|||++||+++++.++|+++++|++|+++. .++.+++.
T Consensus 181 ~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~-~~~~~~~~ 230 (242)
T TIGR03411 181 KTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA-EGSLDQVQ 230 (242)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe-eCCHHHHh
Confidence 999999876 4699999999999999999999999999864 57766654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=234.77 Aligned_cols=175 Identities=24% Similarity=0.314 Sum_probs=145.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.++.|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.+++.
T Consensus 23 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~ 99 (240)
T PRK09493 23 NIDQGEVVVII-GPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFY--LFPHLTALENVM 99 (240)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccc--cCCCCcHHHHHH
Confidence 35678888888 554 5999999 9999999999997542 235899999864 677889998875
Q ss_pred hh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+.. .+.+.++++.+|++...++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 178 (240)
T PRK09493 100 FGPLRVRGASKEEAEKQARELLAKVGLAERAHH-YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178 (240)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 32 1222 2345678999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||++|||++++..+||++++|++|+++. .|+..++.
T Consensus 179 l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (240)
T PRK09493 179 MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVLI 224 (240)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHHh
Confidence 9765 5799999999999999999999999999874 57766553
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=241.22 Aligned_cols=177 Identities=25% Similarity=0.344 Sum_probs=144.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||++|++...++. .|+.+++
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l 106 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDV 106 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHH
Confidence 466788899994443 5999999 9999999999997542 23589999987433454 5899988
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
... .+.+. ..+.++++.+|+.. ..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~ 185 (288)
T PRK13643 107 AFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185 (288)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH
Confidence 532 12222 34567899999964 444 4889999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 186 ~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 232 (288)
T PRK13643 186 LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS-CGTPSDVF 232 (288)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 98764 5699999999999999999999999999974 67776643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=231.80 Aligned_cols=166 Identities=25% Similarity=0.316 Sum_probs=140.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++
T Consensus 24 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l 100 (222)
T PRK10908 24 HMRPGEMAFLT-GHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHH--LLMDRTVYDNV 100 (222)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcc--ccccccHHHHH
Confidence 45678888888 554 6999999 9999999999997532 236899999874 67788999987
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+... ..+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (222)
T PRK10908 101 AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL 179 (222)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 532 22222 245678999999876654 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
|+++ +.|||++|||++++..+||++++|++|+++
T Consensus 180 l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 180 FEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9865 469999999999999999999999999875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=234.73 Aligned_cols=176 Identities=19% Similarity=0.296 Sum_probs=146.2
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+++..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++.+|+.+++.
T Consensus 24 l~i~~Ge~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~ 100 (241)
T PRK10895 24 LTVNSGEIVGLL-GPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS--IFRRLSVYDNLM 100 (241)
T ss_pred EEEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCc--ccccCcHHHHHh
Confidence 356778889999 554 5999999 9999999999997543 246999999874 677889999875
Q ss_pred hhc----CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KLF----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~~----~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... ... ...+.++++.+|+.+..+. ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (241)
T PRK10895 101 AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS-MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI 179 (241)
T ss_pred hhhhcccccCHHHHHHHHHHHHHHcCCHHHhhc-chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 321 111 2346778999999876554 7899999999999999999999999999999999999999999888
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++++ +.|||++||+++++.++||++++|++|+++. .++.+++.
T Consensus 180 l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 225 (241)
T PRK10895 180 IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEIL 225 (241)
T ss_pred HHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHHh
Confidence 8654 5799999999999999999999999999864 57766653
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=232.24 Aligned_cols=175 Identities=24% Similarity=0.344 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.++.|..+.+++.-. ++|||++ ++|+++|++|+|..+. +..++|+||++. +++.+|+.+++...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~ 99 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR--IFPELTVEENLLLG 99 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccc--cCCCCcHHHHHHHH
Confidence 466788888884443 5999999 9999999999997542 235999999874 77888999987532
Q ss_pred c---CC--CHHHHHHHHHhC-CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 F---NL--PYEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 ~---~~--~~~~~~~~l~~~-gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
. .. ....+.++++.+ ++....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 100 AYARRRAKRKARLERVYELFPRLKERRKQ-LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred hhhcCchhHHHHHHHHHHHHHhhhhhhhC-chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 1 11 123455677887 57665554 78999999999999999999999999999999999999999999999865
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|||++|||++++.++|+++++|++|+++. .++.+++
T Consensus 179 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (222)
T cd03224 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAAEL 219 (222)
T ss_pred HHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHHHH
Confidence 4699999999999999999999999999864 4555443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=240.02 Aligned_cols=164 Identities=24% Similarity=0.359 Sum_probs=141.8
Q ss_pred ecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-cCCCH
Q psy2681 13 LQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPY 73 (211)
Q Consensus 13 i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~~~~~ 73 (211)
+-|.- ++|||+| |+|+.+|+.|.|..++ +++||||||+.. +||.+||..|+... +....
T Consensus 29 lFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR--LFpH~tVrgNL~YG~~~~~~ 106 (352)
T COG4148 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR--LFPHYTVRGNLRYGMWKSMR 106 (352)
T ss_pred EecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc--cccceEEecchhhhhcccch
Confidence 33553 5999999 9999999999997542 568999999975 99999999998643 23345
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEE
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 149 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiiv 149 (211)
....++.+.+|+++.+++ ++..|||||||||+|+|||++.|++|++|||.++||..-+.+++.+|.++ +..|++|
T Consensus 107 ~~fd~iv~lLGI~hLL~R-~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV 185 (352)
T COG4148 107 AQFDQLVALLGIEHLLDR-YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185 (352)
T ss_pred HhHHHHHHHhCcHHHHhh-CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE
Confidence 678889999999998876 78999999999999999999999999999999999999999999988755 5689999
Q ss_pred ecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 150 SHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
||.++++.+.+|++++|++|++.. .|..++
T Consensus 186 SHS~~Ev~RLAd~vV~le~GkV~A-~g~~e~ 215 (352)
T COG4148 186 SHSLDEVLRLADRVVVLENGKVKA-SGPLEE 215 (352)
T ss_pred ecCHHHHHhhhheEEEecCCeEEe-cCcHHH
Confidence 999999999999999999999965 465544
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=233.77 Aligned_cols=175 Identities=25% Similarity=0.313 Sum_probs=144.9
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. ...++|++|++. +++..|+.+++...
T Consensus 22 ~~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~ 98 (236)
T TIGR03864 22 FTVRPGEFVALL-GPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPT--LDLDLSVRQNLRYH 98 (236)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCC--CcccCcHHHHHHHH
Confidence 457788999999 554 5999999 9999999999997543 136999999864 66788999887532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+.. ...+.++++.+|+....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 99 AALHGLSRAEARERIAALLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 2222 2345678999999876664 7899999999999999999999999999999999999999999999976
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ +.|||++|||++++.. ||++++|++|+++. .++.+++.
T Consensus 178 ~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~~~~~~~ 220 (236)
T TIGR03864 178 LCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DGAAAELR 220 (236)
T ss_pred HHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 4 4699999999999975 99999999999864 56666554
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=230.92 Aligned_cols=166 Identities=22% Similarity=0.312 Sum_probs=137.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l 104 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHH--LLPDFTALENV 104 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccc--cCCCCcHHHHH
Confidence 356778888884443 5999999 9999999999997542 146999999864 67788999987
Q ss_pred Hhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .... .+.+.++++.+|+++..++ ++.+|||||||||+||||++.+|++|||||||+|||+.++..+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 183 (221)
T TIGR02211 105 AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183 (221)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 531 1222 2346788999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
|+++ +.|||++|||++++.. +|++++|++|+++
T Consensus 184 l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 184 MLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 9754 5699999999999865 6999999999874
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=256.88 Aligned_cols=187 Identities=27% Similarity=0.480 Sum_probs=154.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CCC--HH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP--YE 74 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~~--~~ 74 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|.......+||++|++. .+++.+|+.+++.... ... ..
T Consensus 344 ~i~~Ge~~~l~-G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~ 421 (552)
T TIGR03719 344 KLPPGGIVGVI-GPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKREV 421 (552)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-ccCCCCcHHHHHHhhccccccCcchH
Confidence 45678889999 554 5999999 9999999999998855557999999852 3677889999886432 111 23
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
...++++.+|+......+++.+|||||||||+||||++.+|+++||||||+|||+.++..+.++|+++++|||+||||++
T Consensus 422 ~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~ 501 (552)
T TIGR03719 422 PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRW 501 (552)
T ss_pred HHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 45678999999643223478999999999999999999999999999999999999999999999998789999999999
Q ss_pred HHHhhCCeEEEEeC-CceeeecCChHHHHHHHHHHhhh
Q psy2681 155 LIRETDCELWALEK-KNIRKFNGDFDDYREKLLTSLGE 191 (211)
Q Consensus 155 ~~~~~~~~v~~l~~-g~i~~~~g~~~~~~~~~~~~~~~ 191 (211)
++..+|+++++|++ |++..+.|+++++.+...+...+
T Consensus 502 ~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 539 (552)
T TIGR03719 502 FLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGE 539 (552)
T ss_pred HHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999987 57777889998887655555443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=256.62 Aligned_cols=178 Identities=40% Similarity=0.678 Sum_probs=159.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCCHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQ 79 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~ 79 (211)
+..+.||.+| |-+ ++|||+| |+|...|.+|+|......++||+.|+.. .+.++.|+.+++.... ......++.+
T Consensus 345 i~~g~riaii-G~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~r~~ 422 (530)
T COG0488 345 IDRGDRIAIV-GPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAY 422 (530)
T ss_pred ecCCCEEEEE-CCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh-hcCccCcHHHHHHhhCccccHHHHHHH
Confidence 5678999999 554 5899999 9999999999999888889999999874 3457779999997655 3336778999
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhh
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 159 (211)
|..|+++.....++++.||||||.||.||+.++.+|++||||||||+||.+++..+.+.|.++.+|||+||||.+|+.++
T Consensus 423 L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~v 502 (530)
T COG0488 423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRV 502 (530)
T ss_pred HHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhh
Confidence 99999987666679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCceeeecCChHHHHHH
Q psy2681 160 DCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 160 ~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
|+++|.+.+ ++..+.|++++|.+.
T Consensus 503 a~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 503 ATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred cceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999998 787888999998764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=240.77 Aligned_cols=176 Identities=23% Similarity=0.332 Sum_probs=143.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||+||++...++ ..|+.+++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni 107 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDI 107 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHH
Confidence 456788889994443 5999999 9999999999997543 1359999998743344 46999987
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
... .+... +.+.++++.+||. ...+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~ 186 (290)
T PRK13634 108 CFGPMNFGVSEEDAKQKAREMIELVGLPEELLA-RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186 (290)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 532 12222 3467789999997 4444 4789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 187 ~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~ 233 (290)
T PRK13634 187 MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL-QGTPREI 233 (290)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 98764 5699999999999999999999999999864 5776654
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=244.88 Aligned_cols=161 Identities=25% Similarity=0.318 Sum_probs=137.2
Q ss_pred Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCC----HHHHHHHH
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQL 80 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~l 80 (211)
++|||++ |+|+++|++|+|..++ ++.++|+||++. +++.+|+.+|+... .+.. ..++.+++
T Consensus 8 GKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l 85 (325)
T TIGR01187 8 GKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMTVEENVAFGLKMRKVPRAEIKPRVLEAL 85 (325)
T ss_pred CHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--ccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 5899999 9999999999997643 236999999875 78889999998632 1222 23467889
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
+.+++.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++ +.|+|+||||++++
T Consensus 86 ~~~~l~~~~~~-~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~ 164 (325)
T TIGR01187 86 RLVQLEEFADR-KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164 (325)
T ss_pred HHcCCcchhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999877665 78999999999999999999999999999999999999999999998764 57999999999999
Q ss_pred HhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 157 RETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
..+||++++|++|++.. .|+.+++.
T Consensus 165 ~~~~d~i~vl~~G~i~~-~g~~~~~~ 189 (325)
T TIGR01187 165 MTMSDRIAIMRKGKIAQ-IGTPEEIY 189 (325)
T ss_pred HHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999864 56666543
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=232.44 Aligned_cols=181 Identities=23% Similarity=0.301 Sum_probs=145.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~ 99 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE--IFPRLTVEENLLTG 99 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc--ccCCCcHHHHHHHH
Confidence 356788889994443 5999999 9999999999997542 235999999975 67888999987532
Q ss_pred ---cCCC-HHHHHHHHHhCC-CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 ---FNLP-YEKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 ---~~~~-~~~~~~~l~~~g-l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.. .....++++.++ +....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.++|.++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 178 (230)
T TIGR03410 100 LAALPRRSRKIPDEIYELFPVLKEMLGR-RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLR 178 (230)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 1222 233466778776 4555554 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLT 187 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~ 187 (211)
+.|||++||+++++..+|++++++++|+++. .++.+++....+.
T Consensus 179 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~~~~~~~~~~~~ 225 (230)
T TIGR03410 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SGAGDELDEDKVR 225 (230)
T ss_pred HcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHcChHHHH
Confidence 5699999999999999999999999999864 5777666443333
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=230.05 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=142.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++....
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~en~~~~~~ 96 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN--LFAHLTVRQNIGLGLH 96 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc--cCCCCcHHHHHHhHhh
Confidence 3567788888884443 5999999 9999999999997643 245999999975 778889999875321
Q ss_pred -CC-----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 -NL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 -~~-----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.. ....+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||++||+.++..+.++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 175 (213)
T TIGR01277 97 PGLKLNAEQQEKVVDAAQQVGIADYLDR-LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC 175 (213)
T ss_pred ccCCccHHHHHHHHHHHHHcCcHHHhhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 11 12356778999999876654 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||+|||+.+++..+||++++|++|+++.
T Consensus 176 ~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 176 SERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 5699999999999999999999999999864
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=233.48 Aligned_cols=166 Identities=24% Similarity=0.359 Sum_probs=138.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.++
T Consensus 31 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~ 107 (233)
T PRK11629 31 SIGEGEMMAIV-GSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH--LLPDFTALEN 107 (233)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcc--cCCCCCHHHH
Confidence 45677888888 554 5999999 9999999999997642 135999999874 6778899998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+++.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (233)
T PRK11629 108 VAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186 (233)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 7531 1222 2346788999999876664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
.|+++ +.|||++|||++++..+ +++++|++|+++.
T Consensus 187 ~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 187 LLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 99764 46999999999999876 6999999999864
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=232.35 Aligned_cols=168 Identities=22% Similarity=0.211 Sum_probs=140.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC------eEEEEEeCCCCCCCCCCCCHHHHHHhh-----c
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKL-----F 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~t~~e~~~~~-----~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++. ...+|++|++. +++.+|+.+++... .
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHHHHhccc
Confidence 567788889994443 5999999 99999999999986531 23589999875 77888999987532 1
Q ss_pred CCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q psy2681 70 NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--- 142 (211)
Q Consensus 70 ~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--- 142 (211)
.... ..+.++++.+|+++..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADK-RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 2222 235678999999876654 78999999999999999999999999999999999999999999999764
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++|||++++.++||++++|++|+++.
T Consensus 164 ~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 164 HRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 5699999999999999999999999999864
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=232.02 Aligned_cols=174 Identities=26% Similarity=0.384 Sum_probs=148.7
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHH---HhhcCC
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNL 71 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~---~~~~~~ 71 (211)
..|.-..++ |-+ ++||.|+ |.|++.|++|+|++++ +.+|||+|.+.. +++.+|+.+.+ +.+.+.
T Consensus 26 ~~G~i~Gll-G~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERG--Ly~k~tv~dql~yla~LkGm 102 (300)
T COG4152 26 PPGEIFGLL-GPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERG--LYPKMTVEDQLKYLAELKGM 102 (300)
T ss_pred cCCeEEEee-cCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhc--cCccCcHHHHHHHHHHhcCC
Confidence 344555566 555 5999999 9999999999999875 347999999876 99999998855 445566
Q ss_pred CHH----HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CC
Q psy2681 72 PYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QG 144 (211)
Q Consensus 72 ~~~----~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ 144 (211)
+.. ++..+|+++++..+..+ ++++||.|++||+++..|++++|+++|||||||||||.+.+.+.+.+.++ |.
T Consensus 103 ~~~e~~~~~~~wLer~~i~~~~~~-kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Ga 181 (300)
T COG4152 103 PKAEIQKKLQAWLERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 (300)
T ss_pred cHHHHHHHHHHHHHhccccccccc-hHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCC
Confidence 544 45679999999988775 89999999999999999999999999999999999999999999998765 67
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|||++||.|+.++++||+++.|++|+.+. .|+..+.+.
T Consensus 182 tIifSsH~Me~vEeLCD~llmL~kG~~V~-~G~v~~ir~ 219 (300)
T COG4152 182 TIIFSSHRMEHVEELCDRLLMLKKGQTVL-YGTVEDIRR 219 (300)
T ss_pred EEEEecchHHHHHHHhhhhheecCCceEE-eccHHHHHH
Confidence 99999999999999999999999999874 688776554
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=230.85 Aligned_cols=165 Identities=24% Similarity=0.348 Sum_probs=139.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.++.|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..++.+++.
T Consensus 22 ~i~~G~~~~l~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~ 98 (213)
T cd03262 22 TVKKGEVVVII-GPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN--LFPHLTVLENIT 98 (213)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccc--cCCCCcHHHHHH
Confidence 46678888888 554 5999999 9999999999997542 235899999875 677889999875
Q ss_pred hh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+.. .+.+.++++.+|+....++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 177 (213)
T cd03262 99 LAPIKVKGMSKAEAEERALELLEKVGLADKADA-YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177 (213)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-CccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 32 1222 2345678999999876654 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
|+++ +.|||++|||++++.++|+++++|++|++
T Consensus 178 l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 178 MKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9865 56999999999999999999999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=256.64 Aligned_cols=175 Identities=29% Similarity=0.485 Sum_probs=148.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-----------
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----------- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~----------- 69 (211)
+..|.++.++ |-+ ++|||++ |+|+++|++|+|.......+||++|++. +++.+|+.+++....
T Consensus 30 i~~Ge~~~ii-G~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (556)
T PRK11819 30 FFPGAKIGVL-GLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ--LDPEKTVRENVEEGVAEVKAALDRFN 106 (556)
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--CCCCCcHHHHHHHhhHHHHHHHHHHH
Confidence 4567888888 554 5999999 9999999999998876678999999975 677889988874210
Q ss_pred ------CCC--------------------------HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy2681 70 ------NLP--------------------------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 117 (211)
Q Consensus 70 ------~~~--------------------------~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~l 117 (211)
... ..++.++++.+|+.. .+ +++++|||||||||+||+|++.+|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~-~~~~~LSgGqkqrv~la~al~~~p~v 184 (556)
T PRK11819 107 EIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD-AKVTKLSGGERRRVALCRLLLEKPDM 184 (556)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc-CchhhcCHHHHHHHHHHHHHhCCCCE
Confidence 000 234566889999964 44 48899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 118 LILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 118 llLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
||||||||+||+.++.++.+.|++++.|||+||||++++..+|+++++|++|+++.+.|+++.+.+
T Consensus 185 lLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 185 LLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999999999999999999988999999999999999999999999998767888887643
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=231.41 Aligned_cols=165 Identities=25% Similarity=0.260 Sum_probs=138.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
+++.|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.++
T Consensus 32 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--l~~~~tv~~~ 108 (228)
T PRK10584 32 VVKRGETIALI-GESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM--LIPTLNALEN 108 (228)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccc--cCCCcCHHHH
Confidence 56778888888 554 5999999 9999999999997532 136999999875 6778899998
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .... .+++.++++.+++.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 187 (228)
T PRK10584 109 VELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187 (228)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 7531 1221 2356788999999876654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
.|+++ +.|||++|||.+++.. ||++++|++|+++
T Consensus 188 ~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 188 LLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 99754 5699999999999865 8999999999875
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=237.17 Aligned_cols=177 Identities=21% Similarity=0.219 Sum_probs=146.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+++.+++...
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~ 109 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLP--AAEGMTVRELVAIG 109 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCC--CCCCccHHHHHHhC
Confidence 4567888999994443 5999999 9999999999997643 235999999864 56778999987532
Q ss_pred c----C----C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F----N----L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~----~----~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. . . ....+.++++.+++.+..++ ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~ 188 (265)
T PRK10575 110 RYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1 0 1 12346778999999876654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+|.++ +.|||++||+++++.++||++++|++|+++. .++.+++.
T Consensus 189 ~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (265)
T PRK10575 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA-QGTPAELM 236 (265)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHhc
Confidence 98764 5799999999999999999999999999864 56666554
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=232.67 Aligned_cols=170 Identities=22% Similarity=0.256 Sum_probs=140.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcc-----cCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGEL-----TPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~-----~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
+..|..+.++ |-+ ++|||++ |+|+. +|++|+|..++ +..++|++|++. ++ ..|+.
T Consensus 23 i~~Ge~~~i~-G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~ 98 (227)
T cd03260 23 IPKGEITALI-GPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN--PF-PGSIY 98 (227)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch--hc-cccHH
Confidence 5678888888 554 5999999 99999 99999997542 235999999875 56 78999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCCCccccCC-CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLPSYAHTIP-IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~~~~~~~~-~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
+++... .+. . ..++.++++.+|+.+..++++ +.+||||||||++||||++.+|+++||||||+|||+.++.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 178 (227)
T cd03260 99 DNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178 (227)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 987532 121 1 234677899999987655433 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceeeecCCh
Q psy2681 134 ALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDF 178 (211)
Q Consensus 134 ~l~~~l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~ 178 (211)
.+.+.|+++. .|||++|||++++..+||++++|++|+++. .|+.
T Consensus 179 ~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~ 224 (227)
T cd03260 179 KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE-FGPT 224 (227)
T ss_pred HHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE-ecCc
Confidence 9999998763 599999999999999999999999999864 3443
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=235.64 Aligned_cols=168 Identities=23% Similarity=0.273 Sum_probs=141.2
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---c
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~ 69 (211)
+.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ...++|++|++. +++..|+.+++... .
T Consensus 22 ~~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~ 98 (255)
T PRK11248 22 LTLESGELLVVL-GPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG--LLPWRNVQDNVAFGLQLA 98 (255)
T ss_pred EEECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc--cCCCCcHHHHHHhHHHHc
Confidence 356778899999 554 5999999 9999999999998643 235899999874 67788999987532 2
Q ss_pred CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q psy2681 70 NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--- 142 (211)
Q Consensus 70 ~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--- 142 (211)
+.. ...+.++++.+|+.+..++ ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 99 ~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 99 GVEKMQRLEIAHQMLKKVGLEGAEKR-YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 222 2346788999999876654 78999999999999999999999999999999999999999999999765
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeC--Cceee
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEK--KNIRK 173 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~--g~i~~ 173 (211)
+.|||++|||++++..+|+++++|++ |+++.
T Consensus 178 ~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 178 TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 56999999999999999999999984 87754
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=232.87 Aligned_cols=175 Identities=25% Similarity=0.298 Sum_probs=143.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++ .++.+++...
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~ 100 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPH--LFE-GTVKDNIEYG 100 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCch--hch-hhHHHHHhcc
Confidence 3567788888884443 5999999 9999999999997543 246999999874 554 5888887532
Q ss_pred ---cCCCHHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 69 ---FNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 69 ---~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.+....++.++++.+|+. +..+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 101 PMLKGEKNVDVEYYLSIVGLNKEYAT-RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred hhhcCcHHHHHHHHHHHcCCCHHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 122234567889999996 3444 478999999999999999999999999999999999999999999998764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|||++|||++++.++||++++|++|+++. .++..++
T Consensus 180 ~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (241)
T PRK14250 180 KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE-YAKTYDF 219 (241)
T ss_pred hCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE-eCCHHHH
Confidence 6799999999999999999999999999875 4555443
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=234.41 Aligned_cols=175 Identities=23% Similarity=0.347 Sum_probs=144.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|+||++. +++.+|+.+++..
T Consensus 27 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~ 103 (255)
T PRK11300 27 EVREQEIVSLI-GPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVR--LFREMTVIENLLV 103 (255)
T ss_pred EEcCCeEEEEE-CCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcc--cCCCCcHHHHHHH
Confidence 45678888888 554 5999999 9999999999997543 124889999875 7888899998753
Q ss_pred hc-------------C-----CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 68 LF-------------N-----LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 68 ~~-------------~-----~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
.. . .. ...+.++++.+|+.+..++ ++.+||||||||++||+|++.+|++|||||||+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 182 (255)
T PRK11300 104 AQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR-QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAA 182 (255)
T ss_pred hhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 10 0 00 1245678899999876664 789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 126 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 126 gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|||+.++..+.+.|.++ +.|||++||+++++.++||++++|++|+++. .++.+++.
T Consensus 183 ~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 242 (255)
T PRK11300 183 GLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA-NGTPEEIR 242 (255)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe-cCCHHHHh
Confidence 99999999999999754 5699999999999999999999999999864 56766553
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=236.08 Aligned_cols=182 Identities=20% Similarity=0.298 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCC---cceEEecC----------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPN---KGELRKSP----------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~---~G~i~~~~----------------~~~ig~v~q~~~~~l~~~~t 60 (211)
++..|..+.++ |-+ ++|||++ |+|+++|+ +|+|..++ +..++|+||++. +++.+|
T Consensus 26 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t 102 (262)
T PRK09984 26 NIHHGEMVALL-GPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN--LVNRLS 102 (262)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc--cccCCc
Confidence 56788899999 554 5999999 99999986 48886443 125899999875 677889
Q ss_pred HHHHHHhhc-----------CC-C---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 61 PCEYLMKLF-----------NL-P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 61 ~~e~~~~~~-----------~~-~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
+.+++.... +. . ...+.++++.+|+.+..++ ++.+|||||||||+||||++.+|++|||||||+
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 181 (262)
T PRK09984 103 VLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIARALMQQAKVILADEPIA 181 (262)
T ss_pred HHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-CccccCHHHHHHHHHHHHHhcCCCEEEecCccc
Confidence 999885321 00 1 2346789999999866654 789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHHHh
Q psy2681 126 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 189 (211)
Q Consensus 126 gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~~~ 189 (211)
|||+.++..+.+.|+++ +.|||++|||++++.++|+++++|.+|+++ ..|+++++.+.....+
T Consensus 182 ~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~~~~~~~ 248 (262)
T PRK09984 182 SLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDNERFDHL 248 (262)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHhccHHHHHH
Confidence 99999999999999865 469999999999999999999999999986 4678777644333333
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=234.91 Aligned_cols=177 Identities=21% Similarity=0.209 Sum_probs=146.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~i~~~ 100 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHL--TPEGITVRELVAYG 100 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCC--CCCCccHHHHHHhc
Confidence 4577888899994443 5999999 9999999999997543 235999999864 66778999987531
Q ss_pred -------cCC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 -------FNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 -------~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
++. ....+.++++.+|+....+. ++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 179 (255)
T PRK11231 101 RSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR 179 (255)
T ss_pred cchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 111 12346778999999876664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++.++|+++++|++|+++. .++.+++.
T Consensus 180 ~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 226 (255)
T PRK11231 180 LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA-QGTPEEVM 226 (255)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE-EcCHHHhc
Confidence 99765 5699999999999999999999999999864 56666653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=239.09 Aligned_cols=176 Identities=26% Similarity=0.327 Sum_probs=142.8
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++...++ .+|+.+++.
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~ 108 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVE 108 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHH
Confidence 45678888884443 5999999 9999999999997543 1358999998632234 579999875
Q ss_pred hh---cCCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .... ...+.++++.+|+. ...+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~ 187 (287)
T PRK13641 109 FGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL 187 (287)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 31 2222 23467889999997 4555 48899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||++|||++++.++||++++|++|+++. .|+..++.
T Consensus 188 l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13641 188 FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK-HASPKEIF 233 (287)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9865 4699999999999999999999999999864 56666543
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=231.44 Aligned_cols=166 Identities=22% Similarity=0.247 Sum_probs=139.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC---CCHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---LPYEKS 76 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~---~~~~~~ 76 (211)
++++.|..+.+++.-. ++|||++ |+|+++|++|+|..... .++|++|++. .+...|+.+++..... ......
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~ 96 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIK--ADYEGTVRDLLSSITKDFYTHPYFK 96 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEeccccc--CCCCCCHHHHHHHHhhhccccHHHH
Confidence 3577899999994443 5999999 99999999999987754 7999999864 4567899988753211 112345
Q ss_pred HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecC
Q psy2681 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 152 (211)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd 152 (211)
.++++.+++....++ ++.+|||||||||+||+||+.+|+++||||||++||+.++..+.+.|+++ +.|||+||||
T Consensus 97 ~~~l~~l~l~~~~~~-~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 97 TEIAKPLQIEQILDR-EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHHcCCHHHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 678999999876664 78999999999999999999999999999999999999999999999875 5799999999
Q ss_pred hHHHHhhCCeEEEEeCCce
Q psy2681 153 ERLIRETDCELWALEKKNI 171 (211)
Q Consensus 153 ~~~~~~~~~~v~~l~~g~i 171 (211)
++++..+||++++|+++..
T Consensus 176 ~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 176 IIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHHhCCEEEEEcCCCe
Confidence 9999999999999976543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=234.04 Aligned_cols=174 Identities=26% Similarity=0.379 Sum_probs=144.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++.+|+.
T Consensus 24 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~ 100 (242)
T PRK11124 24 DCPQGETLVLL-GPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN--LWPHLTVQ 100 (242)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc--ccCCCcHH
Confidence 35677888888 554 5999999 9999999999997532 235899999875 77888999
Q ss_pred HHHHh----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 63 EYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 63 e~~~~----~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
+++.. ..+.. ...+.++++.+|++...++ ++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus 101 e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~ 179 (242)
T PRK11124 101 QNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHH
Confidence 98752 11222 2346778999999876664 789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.+.|+++ +.|+|++|||.+++.++|+++++|.+|+++. .++.+++
T Consensus 180 l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 228 (242)
T PRK11124 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QGDASCF 228 (242)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 99999864 5799999999999999999999999999864 5676654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=229.68 Aligned_cols=178 Identities=21% Similarity=0.273 Sum_probs=144.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC------eEEEEEeCCCCCCCCCCCCHHHHHHhhc-----
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKLF----- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~t~~e~~~~~~----- 69 (211)
++..|..+.+++.-. ++|||++ ++|..+|++|+|..++. ..++|++|++........|+.+++....
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 356788899994343 5999999 99999999999987652 4699999987521223478888875321
Q ss_pred --C-CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --N-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~-~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
. .. ...+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADR-PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 11 2346778999999876664 78999999999999999999999999999999999999999999999865
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|+|++|||++++.++||+++++ +|+++ ..++.+++.+
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~~ 201 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQD 201 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhcC
Confidence 469999999999999999999999 78886 4677766543
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=229.30 Aligned_cols=173 Identities=27% Similarity=0.342 Sum_probs=145.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHh---hcC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~~ 70 (211)
.+..|..+.+++.-. ++|||++ ++|.++|++|+|..+. ...++|+||++. +++..|+.+++.. ..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~--~~~~~t~~~~~~~~~~~~~ 99 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP--LYENLTARENLKVHTTLLG 99 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC--ccccCCHHHHHHHHHHHcC
Confidence 456788888884443 5999999 9999999999997643 236899999864 6777899998753 223
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
.....+.++++.+|+++..+. ++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|||
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tii 178 (223)
T TIGR03740 100 LPDSRIDEVLNIVDLTNTGKK-KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178 (223)
T ss_pred CCHHHHHHHHHHcCCcHHHhh-hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 345677889999999876664 78999999999999999999999999999999999999999999999865 46999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
++|||++++.++|+++++|++|+++. .++..
T Consensus 179 i~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 209 (223)
T TIGR03740 179 LSSHILSEVQQLADHIGIISEGVLGY-QGKIN 209 (223)
T ss_pred EEcCCHHHHHHhcCEEEEEeCCEEEE-ecChh
Confidence 99999999999999999999999865 45543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=227.49 Aligned_cols=175 Identities=26% Similarity=0.361 Sum_probs=150.0
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+..|..+.+| |=+ ++|||+| |+|.++|++|+|...+ +..++..||.+. +|+.+||.||+.-.
T Consensus 27 v~~Gei~~LI-GPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r--lF~~lTVlENv~va 103 (250)
T COG0411 27 VRPGEIVGLI-GPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR--LFPGLTVLENVAVG 103 (250)
T ss_pred EcCCeEEEEE-CCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc--ccCCCcHHHHHHHH
Confidence 4567888899 655 5999999 9999999999998643 345888899875 89999999998521
Q ss_pred c----------C---C------CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 69 F----------N---L------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 69 ~----------~---~------~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
. . . ..+++.++|+++||.+.++. +.++||+|||+|+.|||||+.+|++|+||||.+||.+
T Consensus 104 ~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~ 182 (250)
T COG0411 104 AHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-PAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182 (250)
T ss_pred hhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-hhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCH
Confidence 0 0 0 12356779999999998886 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 130 ESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 130 ~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.....+.+.|++. +.||++|.||+..+..+|||++||+.|+++ ..|++++..+
T Consensus 183 ~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV~~ 239 (250)
T COG0411 183 EETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEVRN 239 (250)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHHhc
Confidence 9999999999865 369999999999999999999999999986 4899988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=235.47 Aligned_cols=178 Identities=22% Similarity=0.268 Sum_probs=144.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++...+++..|+.+++.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 112 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHH
Confidence 467788899994443 5999999 9999999999997542 23599999986323566789988874
Q ss_pred h----hcCCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 67 K----LFNLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 67 ~----~~~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ..... ..++.++++.+|+. ...+ +++.+|||||||||+||||++.+|++|||||||++||+.++..+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~ 191 (265)
T TIGR02769 113 EPLRHLTSLDESEQKARIAELLDMVGLRSEDAD-KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191 (265)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 2 11222 23567889999996 4444 4789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 192 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 239 (265)
T TIGR02769 192 LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDVAQLL 239 (265)
T ss_pred HHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCHHHHc
Confidence 98764 5699999999999999999999999999864 56666543
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=241.28 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=143.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc----CCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT----PNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~----p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.+++.-. ++|||++ |+|+++ |++|+|..++ +..++|+||++...+++.+|+
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence 456788889994443 5999999 999986 5899997542 136999999986456788888
Q ss_pred HHHHHhh---c---C---CC----HHHHHHHHHhCCCCCcc--ccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q psy2681 62 CEYLMKL---F---N---LP----YEKSRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126 (211)
Q Consensus 62 ~e~~~~~---~---~---~~----~~~~~~~l~~~gl~~~~--~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~g 126 (211)
.+++... + + .. ..++.++++.+||.+.. .++++.+|||||||||+|||||+.+|++||+||||++
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 188 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNA 188 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence 8776421 1 1 01 23567899999997521 2347899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 127 LDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 127 LD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
||+.++..+.++|+++ +.|||+||||++++.++||++++|.+|++++ .|+.+++
T Consensus 189 LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~g~~~~i 246 (330)
T PRK15093 189 MEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-TAPSKEL 246 (330)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999864 5799999999999999999999999999975 4555443
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=231.06 Aligned_cols=173 Identities=20% Similarity=0.237 Sum_probs=143.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCC-----cceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPN-----KGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|+ +|+|..++ +..++|+||++. +++ .|+
T Consensus 23 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 98 (247)
T TIGR00972 23 DIPKNQVTALI-GPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN--PFP-MSI 98 (247)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc--cCC-CCH
Confidence 46778889999 554 5999999 99999998 99997532 235999999875 666 899
Q ss_pred HHHHHhh---cC-CC----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FN-LP----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~-~~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+ .. .+.+.++++.+|+. +..++ ++.+||||||||++|||||+.+|+++||||||+|||+
T Consensus 99 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 177 (247)
T TIGR00972 99 YDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD-SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP 177 (247)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9987532 12 11 23456789999997 44554 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++|||++.+..+||++++|++|+++. .++.+++
T Consensus 178 ~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 230 (247)
T TIGR00972 178 IATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE-YGPTEQI 230 (247)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999875 3699999999999999999999999999864 5666554
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=234.89 Aligned_cols=179 Identities=20% Similarity=0.224 Sum_probs=144.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.+++--. ++|||++ |+|+++|++|+|..+. +..++|++|++...+++..++.+++...
T Consensus 34 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 113 (267)
T PRK15112 34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFP 113 (267)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHH
Confidence 3566788888994443 5999999 9999999999997542 2359999998743356677887776421
Q ss_pred ---c-CCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 ---F-NLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ---~-~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
. ... .+.+.++++.+|+. ...+ +++.+|||||||||+||+|++.+|+++||||||+|||+.++..+.+.|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 192 (267)
T PRK15112 114 LRLNTDLEPEQREKQIIETLRQVGLLPDHAS-YYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCCChHHHh-cCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1 112 23467789999995 4444 478999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++ +.|||++||+++++..+|+++++|++|+++. .++.+++.
T Consensus 193 ~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 238 (267)
T PRK15112 193 LELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE-RGSTADVL 238 (267)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHHh
Confidence 764 5699999999999999999999999999864 66666554
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=233.37 Aligned_cols=176 Identities=23% Similarity=0.338 Sum_probs=145.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHLF 56 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~ 56 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..++|++|++. ++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--~~ 99 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFN--LF 99 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcc--cC
Confidence 567888999994443 5999999 9999999999997532 235999999864 77
Q ss_pred CCCCHHHHHHhh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q psy2681 57 PDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128 (211)
Q Consensus 57 ~~~t~~e~~~~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD 128 (211)
+..|+.+++... .+.. ...+.++++.+|+.+..++ .+.+|||||+||++||||++.+|+++||||||+|||
T Consensus 100 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (252)
T TIGR03005 100 PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178 (252)
T ss_pred CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 788999988531 1222 2346778999999876654 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 129 IESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 129 ~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.++..+.+.|+++ +.|||++|||++++..+|+++++|++|+++. .|+.+++.
T Consensus 179 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 235 (252)
T TIGR03005 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEIF 235 (252)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999998764 5699999999999999999999999999864 56666553
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=232.57 Aligned_cols=177 Identities=25% Similarity=0.273 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~ 101 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSS--LSFPFTVEEVVAMGR 101 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCc--CCCCCCHHHHHHhhh
Confidence 466788888884443 5999999 9999999999997543 235899999865 567789999875421
Q ss_pred ---CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 70 ---NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL------NNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 70 ---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~------~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. ....+.++++.+|+.+..++ ++.+|||||||||+|||||+ .+|+++||||||+|||+.++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~ 180 (258)
T PRK13548 102 APHGLSRAEDDALVAAALAQVDLAHLAGR-DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180 (258)
T ss_pred cccCCCcHHHHHHHHHHHHHcCCHhHhcC-CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 12346778999999876664 78999999999999999999 599999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
++|+++ +.|||++|||++++.++||++++|++|+++. .++..++..
T Consensus 181 ~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~ 230 (258)
T PRK13548 181 RLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA-DGTPAEVLT 230 (258)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe-eCCHHHHhC
Confidence 998754 4699999999999999999999999999864 577666543
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=251.15 Aligned_cols=175 Identities=23% Similarity=0.274 Sum_probs=147.4
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
..|+...+++.=. ++|||.| |+|+++|++|+|...+ ++++-++||+|...++|.+|+.+.+....
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 4577788885554 5999999 9999999999997643 24688999999988999999998875322
Q ss_pred ---C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 70 ---N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 70 ---~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
. .. ++++.++++++||+.....+++.+||||||||++|||||+.+|++|++|||||.||+..+..+.++|++
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 1 11 234678899999987433458999999999999999999999999999999999999999999999976
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+ +.|.|+||||+.++.++|||+++|.+|++++. |+.+.
T Consensus 475 lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~ 516 (539)
T COG1123 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEK 516 (539)
T ss_pred HHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHH
Confidence 4 67999999999999999999999999999874 55544
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=255.01 Aligned_cols=178 Identities=28% Similarity=0.423 Sum_probs=149.2
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc----------
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---------- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---------- 69 (211)
+.+..|.++.+++--. ++|||++ |+|+++|++|+|..+....+||++|++. +++++|+.+++....
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~ 103 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ--LDPTKTVRENVEEGVAEIKDALDRF 103 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--CCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 4567788999994443 5999999 9999999999998876678999999975 677889998874210
Q ss_pred -------CC--C------------------------HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC
Q psy2681 70 -------NL--P------------------------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 116 (211)
Q Consensus 70 -------~~--~------------------------~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~ 116 (211)
.. . ..++.++++.+|+.. .+ +++.+|||||||||+|||||+.+|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~-~~~~~LSgGqkqrv~la~al~~~p~ 181 (552)
T TIGR03719 104 NEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD-ADVTKLSGGERRRVALCRLLLSKPD 181 (552)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc-CchhhcCHHHHHHHHHHHHHhcCCC
Confidence 00 1 023445678888853 34 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 117 ILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 117 lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+||||||||+||+.++.++.+.|++++.|||+||||++++..+||++++|++|+++.+.|+++++.+
T Consensus 182 lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 182 MLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 9999999999999999999999999888999999999999999999999999998767888887543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=232.51 Aligned_cols=175 Identities=26% Similarity=0.351 Sum_probs=143.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCC--CCHHHHHHhhcCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD--DTPCEYLMKLFNLPYEKSRR 78 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~--~t~~e~~~~~~~~~~~~~~~ 78 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|....+..++|++|++. +++. .++.+++....+...+++.+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY--LDTTLPLTVNRFLRLRPGTKKEDILP 103 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccc--cccccChhHHHHHhccccccHHHHHH
Confidence 356788888884443 5999999 9999999999999877778999999874 4443 36666653222334556788
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChH
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDER 154 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~ 154 (211)
+++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|||++|||++
T Consensus 104 ~l~~~gl~~~~~~-~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~ 182 (251)
T PRK09544 104 ALKRVQAGHLIDA-PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182 (251)
T ss_pred HHHHcCChHHHhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9999999876664 78999999999999999999999999999999999999999999998754 579999999999
Q ss_pred HHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 155 LIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++.++|+++++|++ +++ ..|+.+++.
T Consensus 183 ~i~~~~d~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 183 LVMAKTDEVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence 99999999999965 665 456766553
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=233.19 Aligned_cols=175 Identities=21% Similarity=0.228 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++..|+.+++...
T Consensus 23 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 23 TAPPGSLTGLL-GPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD--TAVPLTVRDVVALG 99 (256)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc--cCCCCCHHHHHHhc
Confidence 45678888888 554 5999999 9999999999997643 235899999874 56778999987532
Q ss_pred c-------CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-------~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .. ....+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 178 (256)
T TIGR03873 100 RIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLA 178 (256)
T ss_pred chhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence 1 11 12246778999999876664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (256)
T TIGR03873 179 LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA-AGPPREVL 225 (256)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE-ecCHHHhh
Confidence 99876 5699999999999999999999999999874 57776654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=238.25 Aligned_cols=175 Identities=25% Similarity=0.328 Sum_probs=142.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||+||++...+++ .|+.+++.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~ 108 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREII 108 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHH
Confidence 45677888884443 5999999 9999999999997542 23689999986333444 48888885
Q ss_pred hh---cCCC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+.. .+.+.++++.+|+. ...+ +++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~ 187 (286)
T PRK13646 109 FGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMS-QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL 187 (286)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 32 1222 23456889999997 4444 47899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||+||||++++.++||++++|++|+++. .|+..++
T Consensus 188 l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~ 233 (286)
T PRK13646 188 LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS-QTSPKEL 233 (286)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9764 5699999999999999999999999999874 5676654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=253.45 Aligned_cols=179 Identities=26% Similarity=0.466 Sum_probs=150.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CC--CHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--PYEK 75 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~--~~~~ 75 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|.......+||++|++. .+++.+|+.+++.... .. ....
T Consensus 347 i~~Ge~~~l~-G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~ 424 (556)
T PRK11819 347 LPPGGIVGII-GPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIKVGNREIP 424 (556)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchh-hcCCCCCHHHHHHhhcccccccccHHH
Confidence 4567888898 665 5999999 9999999999998865557999999862 3678889999886321 11 1234
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~ 155 (211)
...+++.+|+.....++++.+|||||||||+||||++.+|++|||||||+|||+.++..+.++|.++++|||+||||+++
T Consensus 425 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 504 (556)
T PRK11819 425 SRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWF 504 (556)
T ss_pred HHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 56789999996432234889999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHhhCCeEEEEeC-CceeeecCChHHHHHH
Q psy2681 156 IRETDCELWALEK-KNIRKFNGDFDDYREK 184 (211)
Q Consensus 156 ~~~~~~~v~~l~~-g~i~~~~g~~~~~~~~ 184 (211)
+..+|+++++|++ |++..+.|++.+|.+.
T Consensus 505 ~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 505 LDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999986 6777688998887653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=227.44 Aligned_cols=170 Identities=23% Similarity=0.258 Sum_probs=137.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++...+++.+|+.+++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~ 106 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA 106 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHH
Confidence 466788888884443 5999999 9999999999997532 23699999987323566789988875
Q ss_pred hh---cCC-C-HH---H-HHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 67 KL---FNL-P-YE---K-SRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 67 ~~---~~~-~-~~---~-~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. ... . .. . +.++++.+++. ...+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 185 (228)
T cd03257 107 EPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN-RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185 (228)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhh-CCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 21 111 1 11 1 23688999995 4445 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|+++ +.|||++|||++.+..+||++++|++|+++.
T Consensus 186 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 186 DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999764 5699999999999999999999999998853
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=240.03 Aligned_cols=176 Identities=19% Similarity=0.206 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc----CCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT----PNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~----p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
++..|..+.+++--. ++|||++ |+|+++ |++|+|..++ +..++|+||++...+++.+++
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence 456788889994443 5999999 999997 4889997543 125999999985457888888
Q ss_pred HHHHHh----hcCCC----HHHHHHHHHhCCCCC---ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 62 CEYLMK----LFNLP----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 62 ~e~~~~----~~~~~----~~~~~~~l~~~gl~~---~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.+++.. ..+.. .+.+.++++.+||.+ ..+ +++.+|||||||||+|||||+.+|++||+||||++||+.
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~-~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~ 187 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLD-VYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHh-CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 765532 11222 234678999999974 234 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++..++++|+++ +.|+|+||||+..+.++||++++|.+|++++ .|+..+
T Consensus 188 ~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive-~g~~~~ 240 (326)
T PRK11022 188 IQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE-TGKAHD 240 (326)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 999999998764 5699999999999999999999999999976 455544
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=227.80 Aligned_cols=177 Identities=22% Similarity=0.248 Sum_probs=143.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC----CcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP----NKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p----~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|+++| ++|+|..++ +..++|++|++...+++.+++.+++.
T Consensus 8 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~ 86 (230)
T TIGR02770 8 SLKRGEVLALV-GESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI 86 (230)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence 45678888888 554 5999999 9999999 899997643 24699999997322456678877654
Q ss_pred hh---cCCC----HHHHHHHHHhCCCC---CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLP---SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~---~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. .+.. .+++.++++.+++. ...+ +++.+|||||||||+||||++.+|+++||||||+|||+.++..+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~ 165 (230)
T TIGR02770 87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLK-KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL 165 (230)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 21 1111 23467889999997 3444 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+++ +.|||++||+++++..+||++++|++|+++. .++.+++.
T Consensus 166 ~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 214 (230)
T TIGR02770 166 KLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE-RGTVKEIF 214 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 998764 5699999999999999999999999999864 56666553
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=239.62 Aligned_cols=175 Identities=26% Similarity=0.327 Sum_probs=143.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------------------CeEEEEEeCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------------------RLRIGKFDQHSG 52 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------------------~~~ig~v~q~~~ 52 (211)
++..|..+.++ |-. ++|||++ |+|+++|++|+|...+ +..+||++|++.
T Consensus 48 ~i~~Ge~~~I~-G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~ 126 (320)
T PRK13631 48 TFEKNKIYFII-GNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126 (320)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECch
Confidence 45678888999 554 5999999 9999999999997531 235999999874
Q ss_pred CCCCCCCCHHHHHHhh---cCCCH----HHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCC
Q psy2681 53 EHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 124 (211)
Q Consensus 53 ~~l~~~~t~~e~~~~~---~~~~~----~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt 124 (211)
..++. .|+.+++... .+.+. ..+.++++.+|+. ...++ ++.+|||||||||+|||||+.+|++|||||||
T Consensus 127 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPt 204 (320)
T PRK13631 127 YQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER-SPFGLSGGQKRRVAIAGILAIQPEILIFDEPT 204 (320)
T ss_pred hcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 33554 5899887532 12222 3456789999996 45554 78999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 125 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 125 ~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+++. .|+.+++
T Consensus 205 sgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~-~g~~~~~ 263 (320)
T PRK13631 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK-TGTPYEI 263 (320)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999764 5799999999999999999999999999975 5776654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=235.34 Aligned_cols=175 Identities=26% Similarity=0.337 Sum_probs=141.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
+++.|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++...++. .|+.++
T Consensus 29 ~i~~Ge~~~l~-G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~ 106 (280)
T PRK13649 29 TIEDGSYTAFI-GHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKD 106 (280)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHH
Confidence 46678888888 554 5999999 9999999999997542 23589999986322444 689888
Q ss_pred HHhh---cCCCH----HHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 65 LMKL---FNLPY----EKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 65 ~~~~---~~~~~----~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
+... .+... ..+.++++.+|+.. ..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (280)
T PRK13649 107 VAFGPQNFGVSQEEAEALAREKLALVGISESLFE-KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185 (280)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 7532 22222 23567889999974 444 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|+++ +.|||++|||++++..+||++++|++|+++. .|+.+++
T Consensus 186 ~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (280)
T PRK13649 186 TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL-SGKPKDI 232 (280)
T ss_pred HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 998765 5799999999999999999999999999864 5666554
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=229.18 Aligned_cols=176 Identities=22% Similarity=0.315 Sum_probs=141.8
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcc--cCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGEL--TPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
+++..|..+.++ |-+ ++|||++ |+|+. +|++|+|..++ +..++|++|++. +++.+|+.++
T Consensus 21 l~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~t~~~~ 97 (243)
T TIGR01978 21 LTVKKGEIHAIM-GPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPE--EIPGVSNLEF 97 (243)
T ss_pred eEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccc--ccCCcCHHHH
Confidence 356778899999 554 5999999 99995 79999997543 123899999875 6788898887
Q ss_pred HHhhc---C-------CC----HHHHHHHHHhCCCCC-ccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q psy2681 65 LMKLF---N-------LP----YEKSRRQLGMFGLPS-YAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLD 128 (211)
Q Consensus 65 ~~~~~---~-------~~----~~~~~~~l~~~gl~~-~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD 128 (211)
+.... . .. .+.+.++++.+|+.. ..+ +++. +|||||||||+|||||+.+|+++||||||++||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 176 (243)
T TIGR01978 98 LRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLN-RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176 (243)
T ss_pred HHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcc-cccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 64211 1 11 134567899999974 444 3666 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChHHHH
Q psy2681 129 IESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 129 ~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.++..+.++|+++ +.|||++|||++++..+ ||++++|++|+++. .|+.+.+.
T Consensus 177 ~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (243)
T TIGR01978 177 IDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDVELAK 233 (243)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCHHHhc
Confidence 99999999999876 46999999999999998 89999999999864 56665443
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=232.95 Aligned_cols=176 Identities=23% Similarity=0.229 Sum_probs=145.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|+||++. +++..++.+++...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~~~~~~ 106 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNAT--TPGDITVQELVARGR 106 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCc--CCCCCcHHHHHHhCc
Confidence 456788888884443 5999999 9999999999997643 235999999975 67778999887532
Q ss_pred -cC------CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 -FN------LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 -~~------~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .. ...+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 185 (265)
T PRK10253 107 YPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLEL 185 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-CcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 10 11 2346778999999876654 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|.++ +.|||++|||++++.++||++++|++|+++. .|+..++.
T Consensus 186 L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (265)
T PRK10253 186 LSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9764 5699999999999999999999999999864 57766654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=232.41 Aligned_cols=178 Identities=17% Similarity=0.249 Sum_probs=142.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC--------------------eEEEEEeCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR--------------------LRIGKFDQHSGEHLFPDD 59 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~--------------------~~ig~v~q~~~~~l~~~~ 59 (211)
+++..|..+.+++.-. ++|||++ |+|+++|++|+|..... ..++|++|++...+++..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 106 (258)
T PRK11701 27 FDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV 106 (258)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccc
Confidence 3567788899994443 6999999 99999999999975431 248999998743356667
Q ss_pred CHHHHHHhh---cC-CC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 60 TPCEYLMKL---FN-LP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 60 t~~e~~~~~---~~-~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
++.+++... .. .. ...+.++++.+++.. ..+ +++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 107 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~ 185 (258)
T PRK11701 107 SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARID-DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185 (258)
T ss_pred cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHh-CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 777665421 11 11 234567899999964 444 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++..+|+++++|++|+++. .|+.+++
T Consensus 186 ~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 239 (258)
T PRK11701 186 VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE-SGLTDQV 239 (258)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999998754 5699999999999999999999999999964 5665554
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=239.79 Aligned_cols=178 Identities=21% Similarity=0.257 Sum_probs=144.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC---cceEEecC---------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN---KGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~---~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++|+ +|+|..++ +..|+|+||++...+++.+++.
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 356788899994443 5999999 99999996 99997543 1369999999854578888988
Q ss_pred HHHHh---hc-CCCH----HHHHHHHHhCCCCCcc--ccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 63 EYLMK---LF-NLPY----EKSRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 63 e~~~~---~~-~~~~----~~~~~~l~~~gl~~~~--~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+++.. .. +... .++.++++.+||.+.. .++++.+|||||+|||+|||||+.+|++||+||||++||+.++
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~ 197 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQ 197 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 76642 11 2222 3466789999997421 1247899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.++|+++ +.|+|+||||+..+.++||++++|.+|++++ .|+.+++
T Consensus 198 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive-~g~~~~i 249 (330)
T PRK09473 198 AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME-YGNARDV 249 (330)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999988764 5699999999999999999999999999976 4665543
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=229.84 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=144.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+++..|..+.+++.-. ++|||++ ++|+.+|++|+|..++ +..++|++|++. +++..|+.+++..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~ 103 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR--VFSRMTVEENLAM 103 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcc--cCCCCcHHHHHHH
Confidence 4677889999994443 5999999 9999999999997542 235999999864 6777899998853
Q ss_pred hc--CCC---HHHHHHHHHhC-CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 68 LF--NLP---YEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 68 ~~--~~~---~~~~~~~l~~~-gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.. ... ...+.++++.+ ++.+..+. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 104 GGFFAERDQFQERIKWVYELFPRLHERRIQ-RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred hhhccChhHHHHHHHHHHHHHHHHHHHHhC-chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 21 111 22345667777 46655554 7899999999999999999999999999999999999999999999876
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 183 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 225 (237)
T PRK11614 183 LREQGMTIFLVEQNANQALKLADRGYVLENGHVVL-EDTGDALL 225 (237)
T ss_pred HHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe-eCCHHHHh
Confidence 4 5799999999999999999999999999864 67776654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=255.65 Aligned_cols=177 Identities=21% Similarity=0.426 Sum_probs=145.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHh-------------
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK------------- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~------------- 67 (211)
++..|.++.+++.-. ++|||++ |+|.++|++|+|.......++|++|++. .+ ..++.+++..
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~--~~-~~~~~~~v~~~~~~~~~l~~~~~ 99 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETP--AL-PQPALEYVIDGDREYRQLEAQLH 99 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--CC-CCCHHHHHHHhhHHHHHHHHHHH
Confidence 467889999994443 5999999 9999999999999877667999999642 11 2343333210
Q ss_pred -------------hc-------CC-CHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 68 -------------LF-------NL-PYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 68 -------------~~-------~~-~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
.. .. ...++.++++.+|+.. ..+ +++.+|||||||||+||+||+.+|++||||||||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~-~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn 178 (638)
T PRK10636 100 DANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE-RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTN 178 (638)
T ss_pred HHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc-CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 00 00 1235677899999973 444 4899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 126 NLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 126 gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|||+.++.++.++|+++++|||+||||++++..+|+++++|++|++..+.|+++.|..
T Consensus 179 ~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 179 HLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred cCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999999999989999999999999999999999999999888999887754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=258.16 Aligned_cols=181 Identities=39% Similarity=0.706 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHh-hcCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRR 78 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~-~~~~~~~~~~~ 78 (211)
.+..|.++.++ |-+ ++|||++ |+|+++|++|+|....+.++||++|++...+....+....+.. ......+.+.+
T Consensus 531 ~i~~Ge~i~Lv-G~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 609 (718)
T PLN03073 531 GIDLDSRIAMV-GPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 609 (718)
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHH
Confidence 45678899999 554 5999999 9999999999999877778999999753222111121112211 12334567888
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~ 158 (211)
+++.+|+......+++.+|||||||||+||||++.+|++|||||||||||+.++..+.+.|.++++|||+||||++++..
T Consensus 610 ~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~ 689 (718)
T PLN03073 610 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISG 689 (718)
T ss_pred HHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 99999997532234889999999999999999999999999999999999999999999999887799999999999999
Q ss_pred hCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 159 TDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 159 ~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+|+++++|.+|+++.+.|++.+|.+.
T Consensus 690 ~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 690 SVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999997678998887654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=233.37 Aligned_cols=176 Identities=24% Similarity=0.298 Sum_probs=141.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++.. .+...++.+++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~-~~~~~~~~~~l~~ 101 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQ-QIFYTDIDSDIAF 101 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhh-ccccccHHHHHHH
Confidence 567788899994443 5999999 9999999999997532 1359999998642 2234567766642
Q ss_pred h---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+... ..+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 180 (271)
T PRK13638 102 SLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180 (271)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1 22222 235678999999876654 789999999999999999999999999999999999999999999998
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++++..+||++++|++|+++. .|+.+++
T Consensus 181 ~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 223 (271)
T PRK13638 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGAPGEV 223 (271)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 75 5699999999999999999999999999864 5666554
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=251.93 Aligned_cols=175 Identities=22% Similarity=0.280 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++. +++.+|+.+++..
T Consensus 33 ~i~~Ge~~~li-G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~ 109 (510)
T PRK15439 33 TLHAGEVHALL-GGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPL--LFPNLSVKENILF 109 (510)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCc--cCCCCcHHHHhhc
Confidence 35678888888 554 5999999 9999999999997643 135999999874 7888999998864
Q ss_pred hcCC---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 68 LFNL---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 68 ~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.... ..+++.++++.+|+....++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|+++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (510)
T PRK15439 110 GLPKRQASMQKMKQLLAALGCQLDLDS-SAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA 188 (510)
T ss_pred ccccchHHHHHHHHHHHHcCCCccccC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 2211 13456789999999877664 78999999999999999999999999999999999999999999999765
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 189 ~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 228 (510)
T PRK15439 189 QGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGKTADLS 228 (510)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecChHHcC
Confidence 5799999999999999999999999999864 67776654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=234.89 Aligned_cols=175 Identities=23% Similarity=0.287 Sum_probs=142.3
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
+..|..+.+++.-. ++|||++ ++|+++|++|+|..++ +..+||++|++. ..++..|+.+++...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPD-NQFVGATVEDDVAFGLE 108 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChH-HhcccccHHHHHHhhHH
Confidence 34677888884332 6999999 9999999999997543 236899999863 245667999988532
Q ss_pred -cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+... +.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 187 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQDFKER-EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIR 187 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCHhHhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 12222 346788999999876664 78999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++|||++.+. .||++++|++|+++. .|+.+++.
T Consensus 188 ~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~-~g~~~~~~ 228 (279)
T PRK13650 188 DDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES-TSTPRELF 228 (279)
T ss_pred HhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 569999999999994 799999999999864 57766543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=258.05 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=145.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.++.|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +.+++|+||++...+++.+|+.+++
T Consensus 346 ~i~~Ge~~~lv-G~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l 424 (623)
T PRK10261 346 DLWPGETLSLV-GESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSI 424 (623)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHH
Confidence 45678888899 554 5999999 9999999999997543 2369999999743478889999987
Q ss_pred Hhh---cCC-C----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 66 MKL---FNL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 66 ~~~---~~~-~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
... .+. . .+++.++++.+||. ...+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~ 503 (623)
T PRK10261 425 MEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503 (623)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 532 122 1 13567899999996 4455 488999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++|+++ +.|||+||||++++.++||++++|.+|+++. .|+..++
T Consensus 504 ~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~-~g~~~~i 551 (623)
T PRK10261 504 NLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE-IGPRRAV 551 (623)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 999653 5799999999999999999999999999975 4655543
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=233.59 Aligned_cols=188 Identities=24% Similarity=0.260 Sum_probs=150.0
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc-C----CcceEEecC---------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT-P----NKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-p----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+..|+.+.+++-=. ++||+.+ |.|+++ | .+|+|..++ .+.|+|+||+|...|+|-+++
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~I 107 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI 107 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhH
Confidence 45677888883333 5999999 999997 3 567776432 347999999998788998888
Q ss_pred HHHHHh----hcCC-C----HHHHHHHHHhCCCCCc--cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 62 CEYLMK----LFNL-P----YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 62 ~e~~~~----~~~~-~----~~~~~~~l~~~gl~~~--~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.+.+.. ..+. . .+++.++|+.+|+++. ..+.++.+|||||||||.||.|++.+|++||+||||++||+.
T Consensus 108 g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt 187 (316)
T COG0444 108 GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187 (316)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHH
Confidence 765542 1222 1 2357789999999864 334588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCCh--------HHHHHHHHHHhhhh
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF--------DDYREKLLTSLGEA 192 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~--------~~~~~~~~~~~~~~ 192 (211)
.+.+++++|+++ +.++|+||||+..+.++||||+||..|++++. |+. ..|.+.++..+...
T Consensus 188 ~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 188 VQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCHHHHhcCCCChHHHHHHHhCccc
Confidence 999999999764 67999999999999999999999999999874 443 34666777776544
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=232.59 Aligned_cols=176 Identities=26% Similarity=0.358 Sum_probs=144.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|...+ +..++|++|++...+ ...|+.+++...
T Consensus 26 ~i~~Ge~~~i~-G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~~~l~~~ 103 (277)
T PRK13652 26 IAPRNSRIAVI-GPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI-FSPTVEQDIAFG 103 (277)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccc-ccccHHHHHHhH
Confidence 45678889999 554 5999999 9999999999997543 135899999874223 357899888531
Q ss_pred ---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+... +.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 104 PINLGLDEETVAHRVSSALHMLGLEELRDR-VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12332 245778999999876665 7899999999999999999999999999999999999999999999975
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 183 l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 226 (277)
T PRK13652 183 LPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA-YGTVEEIF 226 (277)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE-ECCHHHHh
Confidence 4 5699999999999999999999999999864 57776653
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=233.92 Aligned_cols=177 Identities=21% Similarity=0.294 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||+||++... +...|+.+++..
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~-~~~~tv~e~l~~ 106 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQ-LFSASVYQDVSF 106 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchh-hccccHHHHHHh
Confidence 467788999994443 5999999 9999999999997543 23599999987422 335789998853
Q ss_pred h---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+.+ ...+.++++.+|+.+..++ ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 107 GAVNLKLPEDEVRKRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 2 2222 2346778999999877664 889999999999999999999999999999999999999999999987
Q ss_pred hc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++ +.|||++|||++++..+|+++++|++|+++. .|+.+++.
T Consensus 186 ~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 230 (283)
T PRK13636 186 EMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVF 230 (283)
T ss_pred HHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 64 5699999999999999999999999999864 67766643
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=251.64 Aligned_cols=176 Identities=27% Similarity=0.360 Sum_probs=145.2
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEec-C-----------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS-P-----------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~-~-----------------~~~ig~v~q~~~~~l~~~~t 60 (211)
+.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+ . +.+++|++|++. +++.+|
T Consensus 305 ~~i~~Ge~~~l~-G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~t 381 (520)
T TIGR03269 305 LEVKEGEIFGIV-GTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRT 381 (520)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCc
Confidence 356778889999 554 5999999 999999999999863 1 135899999864 778899
Q ss_pred HHHHHHhhc--CCC----HHHHHHHHHhCCCCC-----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 61 PCEYLMKLF--NLP----YEKSRRQLGMFGLPS-----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 61 ~~e~~~~~~--~~~----~~~~~~~l~~~gl~~-----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
+.+++.... ... ..++.++++.+|+.. ..+ +++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 382 v~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~ 460 (520)
T TIGR03269 382 VLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILD-KYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460 (520)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 999885321 111 234667899999975 344 48899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 130 ESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 130 ~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++. .|+..++.
T Consensus 461 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 516 (520)
T TIGR03269 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK-IGDPEEIV 516 (520)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999643 5799999999999999999999999999864 56665543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=226.97 Aligned_cols=176 Identities=25% Similarity=0.336 Sum_probs=146.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
++++.|..+.+++.-. ++|||++ |+|.++|++|+|...+ +..++|++|++. +++.+|+.+++...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~nl~~~~~ 98 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYA--LFPHLTVFENIAFGLR 98 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccc--cCCCCcHHHHHHHHHH
Confidence 4678888999994443 6999999 9999999999997642 346999999875 67778998887532
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.. ...+..+++.+|+.+..++ .+.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 177 (232)
T cd03300 99 LKKLPKAEIKERVAEALDLVQLEGYANR-KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1222 2345678999999877665 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|||++||+++++.++||++++|++|+++. .++.+++
T Consensus 178 ~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~~~~~ 218 (232)
T cd03300 178 KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGTPEEI 218 (232)
T ss_pred HHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHH
Confidence 5699999999999999999999999999864 5665544
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=219.52 Aligned_cols=180 Identities=21% Similarity=0.311 Sum_probs=147.8
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.|+-..++ |=+ ++||.|. +.|+++|++|.|..+. +..+||+||+++ .|..+||.+|+.....
T Consensus 29 ~GEiVGLL-GPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S--IFr~LtV~dNi~~vlE 105 (243)
T COG1137 29 SGEIVGLL-GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS--IFRKLTVEDNIMAVLE 105 (243)
T ss_pred CCcEEEEE-CCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccch--HhhcCcHHHHHHHHHh
Confidence 34445555 433 5899999 9999999999997542 456999999986 8999999999864321
Q ss_pred C---C------HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 71 L---P------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 71 ~---~------~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
. + ..+.+++|+.|.+.+.++. +..+||||||+|+.|||||+.+|+++||||||+|+||.+...+.++++.
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~-~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDS-KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcC-cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 1 1 1235689999999988775 7899999999999999999999999999999999999999888877765
Q ss_pred c---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhh
Q psy2681 142 Y---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLG 190 (211)
Q Consensus 142 ~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~ 190 (211)
+ +..|+|+.|+..+...+|||.+++.+|++. +.|+++++.+ ...++.|
T Consensus 185 L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~n~~Vr~~Y 236 (243)
T COG1137 185 LKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVNNEDVRRVY 236 (243)
T ss_pred HHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhcChhhhhhc
Confidence 4 679999999999999999999999999996 5899887654 4555554
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=226.73 Aligned_cols=177 Identities=22% Similarity=0.279 Sum_probs=146.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+.+..|..+.+++.-. ++|||++ ++|+.+|++|+|..++ +..++|++|++. +++..++.+++....
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~ 97 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYA--LFPHMTVYKNIAYGLK 97 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCc--cCCCccHHHHHHHHHH
Confidence 3466788889994443 5999999 9999999999997643 346999999864 677889998875321
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
+.. .+.+.++++.+|+.+..++ ++.+|||||+||++||||++.+|++++|||||+|||+.++..+++.|+++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~ 176 (235)
T cd03299 98 KRKVDKKEIERKVLEIAEMLGIDHLLNR-KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176 (235)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHHhc-CcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 111 2345678999999876665 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++||+++++.++|+++++|.+|+++. .++.+.+.
T Consensus 177 ~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 218 (235)
T cd03299 177 KEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ-VGKPEEVF 218 (235)
T ss_pred HhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 5699999999999999999999999999874 56665543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=233.53 Aligned_cols=177 Identities=23% Similarity=0.277 Sum_probs=141.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ +..++|++|++...++ ..|+.+
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e 110 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF-QETIEK 110 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh-hhHHHH
Confidence 3567788889984443 5999999 9999999999996432 2358999998632233 358888
Q ss_pred HHHhh---cCCCH----HHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 64 YLMKL---FNLPY----EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 64 ~~~~~---~~~~~----~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
++... .+... +.+.++++.+++. +..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+
T Consensus 111 nl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l 189 (289)
T PRK13645 111 DIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK-RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDF 189 (289)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 87532 12222 2356788999995 4555 47899999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 136 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 136 ~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 190 ~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 238 (289)
T PRK13645 190 INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS-IGSPFEI 238 (289)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9988764 5699999999999999999999999999864 5666554
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=220.36 Aligned_cols=173 Identities=23% Similarity=0.380 Sum_probs=146.7
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCCCCC
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHLFPD 58 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l~~~ 58 (211)
-.|.+|.||++-. ++||+++ |.-+.+|+.|.|..+. +.+.|+|||+.+ ++..
T Consensus 30 ~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FN--LWsH 107 (256)
T COG4598 30 NAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFN--LWSH 107 (256)
T ss_pred CCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcc--hhHH
Confidence 3678999997764 6999999 9999999999997431 335899999875 8899
Q ss_pred CCHHHHHHhh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 59 DTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 59 ~t~~e~~~~~----~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+|+.+|+... .+.++ ++++.+|.++|+.+..+. ++..|||||+||++|||||+.+|+++++|||||+|||+
T Consensus 108 mtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~-YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPE 186 (256)
T COG4598 108 MTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA-YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE 186 (256)
T ss_pred HHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc-CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHH
Confidence 9999998642 23332 456789999999987775 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
-.-+++..++++ +.|+++|||.+.|+..+++.++++++|.+.+ .|+++++
T Consensus 187 lVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE-~G~P~qv 239 (256)
T COG4598 187 LVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE-EGPPEQV 239 (256)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc-cCChHHH
Confidence 999988888765 7899999999999999999999999998854 6776553
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=232.36 Aligned_cols=174 Identities=28% Similarity=0.344 Sum_probs=142.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++.. .+...|+.+++..
T Consensus 24 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~enl~~ 101 (274)
T PRK13644 24 VIKKGEYIGII-GKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPET-QFVGRTVEEDLAF 101 (274)
T ss_pred EEeCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhh-hcccchHHHHHHh
Confidence 46678888999 554 5999999 9999999999997542 2359999998742 2455789988753
Q ss_pred h---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+.. .+.+.++++.+|+....++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 102 GPENLCLPPIEIRKRVDRALAEIGLEKYRHR-SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 2 1222 2346678999999877664 789999999999999999999999999999999999999999999997
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++.+. .||++++|++|+++. .|+.+++
T Consensus 181 ~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 222 (274)
T PRK13644 181 KLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVL-EGEPENV 222 (274)
T ss_pred HHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEE-ECCHHHH
Confidence 64 569999999999995 699999999999864 5666654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=232.44 Aligned_cols=176 Identities=24% Similarity=0.320 Sum_probs=144.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+++.|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..+||++|++. .++...|+.+++...
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~-~~~~~~tv~enl~~~ 106 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPD-NQFVGATVQDDVAFG 106 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHH-HhcccccHHHHHhhh
Confidence 3567888999994443 5999999 9999999999997543 236999999862 245567999988532
Q ss_pred ---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+... +.+.++++.+||.+...+ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 107 LENIGVPREEMVERVDQALRQVGMEDFLNR-EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred HhhCCCCHHHHHHHHHHHHHHcCChhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12222 346788999999877665 7899999999999999999999999999999999999999999999976
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+ +.|||++|||++.+.. |+++++|.+|+++. .|+.+++
T Consensus 186 l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~ 227 (279)
T PRK13635 186 LKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILE-EGTPEEI 227 (279)
T ss_pred HHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHH
Confidence 4 5699999999999974 99999999999864 5666554
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=249.90 Aligned_cols=173 Identities=20% Similarity=0.282 Sum_probs=144.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|..++ +..++|++|++. +++.+|+.+++..
T Consensus 26 ~i~~Ge~~~l~-G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~ 102 (501)
T PRK10762 26 NVYPGRVMALV-GENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELN--LIPQLTIAENIFL 102 (501)
T ss_pred EEcCCeEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchh--ccCCCcHHHHhhh
Confidence 35667888888 554 5999999 9999999999997642 235999999864 7888999998853
Q ss_pred hc------C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 68 LF------N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 68 ~~------~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.. . .. ..++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 181 (501)
T PRK10762 103 GREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDK-LVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF 181 (501)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHcCCCCCccC-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHH
Confidence 21 1 11 2346788999999877664 78999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++|+++ +.|||+||||++++..+||++++|++|+++. .++..+
T Consensus 182 ~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 227 (501)
T PRK10762 182 RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA-EREVAD 227 (501)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ecCcCc
Confidence 888765 5699999999999999999999999999864 455443
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=226.17 Aligned_cols=169 Identities=25% Similarity=0.363 Sum_probs=138.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|.... +..++|++|+. ..+++.+|+.+++..
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~tv~e~l~~~~~ 121 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK-TQLWWDLPVIDSFYLLAA 121 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc-cccCCCCcHHHHHHHHHH
Confidence 356788888884443 5999999 9999999999997543 23689998542 236778899888742
Q ss_pred hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
..+... ..+.++++.+|+.+..++ ++.+||||||||++||+|++.+|+++||||||+|||+.++..+.++|+++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (236)
T cd03267 122 IYDLPPARFKKRLDELSELLDLEELLDT-PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200 (236)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 222222 235678899999876664 78999999999999999999999999999999999999999999999875
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|||++||+++++.++||++++|.+|+++.
T Consensus 201 ~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred hcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 4699999999999999999999999998853
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=231.00 Aligned_cols=177 Identities=25% Similarity=0.349 Sum_probs=144.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++...++ ..|+.+++..
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~ 102 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAF 102 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc-cccHHHHHHH
Confidence 356788888994443 5999999 9999999999997532 2358999998632233 4688888753
Q ss_pred h---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. .+.. .+.+.++++.+|+.++.++ ++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 181 (275)
T PRK13639 103 GPLNLGLSKEEVEKRVKEALKAVGMEGFENK-PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181 (275)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 1 1222 2346678999999877664 889999999999999999999999999999999999999999999998
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++ +.|||++|||++++..+||++++|++|+++. .|+.+++.
T Consensus 182 ~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (275)
T PRK13639 182 DLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVF 225 (275)
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 75 5699999999999999999999999999874 57766653
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=225.58 Aligned_cols=176 Identities=22% Similarity=0.204 Sum_probs=142.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++..|+.++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--~~~~~tv~en 102 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN--PIPNLSIFEN 102 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc--cCCCCcHHHH
Confidence 456778888884443 5999999 9999974 699997542 246999999874 6778899998
Q ss_pred HHhhc---CC--C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 65 LMKLF---NL--P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 65 ~~~~~---~~--~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
+.... .. . .+.+.++++.+|+.+ ..+ +++.+||||||||++||||++.+|+++||||||+|||+.+
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~ 181 (250)
T PRK14247 103 VALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLD-APAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN 181 (250)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 85321 11 1 234567899999853 234 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+..+.+.|+++ +.|||++|||++++.++|+++++|++|+++. .|+.+++.
T Consensus 182 ~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14247 182 TAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE-WGPTREVF 233 (250)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE-ECCHHHHH
Confidence 99999999875 4699999999999999999999999999864 56766553
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=227.31 Aligned_cols=177 Identities=18% Similarity=0.235 Sum_probs=140.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC--------------------eEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR--------------------LRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~--------------------~~ig~v~q~~~~~l~~~~t 60 (211)
++..|..+.+++.-. ++|||++ ++|+.+|++|+|..+.. ..++|++|++...+++..+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 104 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVS 104 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcccc
Confidence 467788888984443 5999999 99999999999976421 2489999986423445566
Q ss_pred HHHHHHh----hcCC----CHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 61 PCEYLMK----LFNL----PYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 61 ~~e~~~~----~~~~----~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
+.+++.. .... ....+.++++.+|+.. ..+ +++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~ 183 (253)
T TIGR02323 105 AGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRID-DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183 (253)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhh-cCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 6666532 1111 1245678899999963 555 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 132 IDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 132 ~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+..+.++|.+. +.|||+|||+++++..+|+++++|++|+++. .++.+++
T Consensus 184 ~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~ 236 (253)
T TIGR02323 184 QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE-SGLTDQV 236 (253)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-ECCHHHH
Confidence 99999988754 5799999999999999999999999999864 4565554
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=250.31 Aligned_cols=170 Identities=16% Similarity=0.273 Sum_probs=141.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~ 66 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|...+ +..+||++|++. ..+++++|+.+++.
T Consensus 285 ~i~~Ge~~~l~-G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (510)
T PRK09700 285 SVCRGEILGFA-GLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMA 363 (510)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhc
Confidence 35678888888 665 5999999 9999999999997643 135899999842 24678899999875
Q ss_pred hhc-----------CC-C----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 67 KLF-----------NL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 67 ~~~-----------~~-~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
... +. . ...+.++++.+|+. +..+ +++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~ 442 (510)
T PRK09700 364 ISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVN-QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDV 442 (510)
T ss_pred cccccccccccccccccChHHHHHHHHHHHHhcCCCCCCcc-CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCH
Confidence 311 10 1 12356889999996 5555 48899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeee
Q psy2681 130 ESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKF 174 (211)
Q Consensus 130 ~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~ 174 (211)
.++..+.++|+++ +.|||+||||++++.++||++++|++|+++..
T Consensus 443 ~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 443 GAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999765 67999999999999999999999999998653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=250.23 Aligned_cols=174 Identities=21% Similarity=0.229 Sum_probs=145.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|...+ +..++|++|++. +++.+|+.+++..
T Consensus 27 ~i~~Ge~~~li-G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~ 103 (510)
T PRK09700 27 TVYPGEIHALL-GENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELS--VIDELTVLENLYI 103 (510)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeeccc--ccCCCcHHHHhhh
Confidence 35677888888 554 5999999 9999999999997542 135999999864 6788899998753
Q ss_pred h-------cCC---C----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 68 L-------FNL---P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 68 ~-------~~~---~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
. ++. . ..++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~ 182 (510)
T PRK09700 104 GRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE-KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182 (510)
T ss_pred ccccccccccccccCHHHHHHHHHHHHHHcCCCCCccc-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 1 111 1 2346678999999876654 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.++|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 183 ~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (510)
T PRK09700 183 YLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV 232 (510)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence 999999765 579999999999999999999999999986 46766654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=226.96 Aligned_cols=176 Identities=19% Similarity=0.179 Sum_probs=141.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+.+..|..+.+++.-. ++|||++ ++|+++| ++|+|..++ +..++|++|++. ++ ..|+
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~-~~tv 104 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN--PF-LMSI 104 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc--cc-cCcH
Confidence 4567889999994443 5999999 9999987 489987532 235999999875 45 4899
Q ss_pred HHHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. . .+.+.++++.+++. +..+ +++.+||||||||++|||||+.+|+++||||||+|||+
T Consensus 105 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~ 183 (254)
T PRK14273 105 YDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLN-TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183 (254)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 9988532 111 1 23456778888873 3344 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++..+.+.|+++ +.|||++||+++++.++||++++|++|+++. .|+..++.
T Consensus 184 ~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 237 (254)
T PRK14273 184 ISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESSTDELF 237 (254)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999876 4699999999999999999999999999874 56665543
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=227.63 Aligned_cols=174 Identities=20% Similarity=0.192 Sum_probs=140.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 110 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN--PFP-MSIY 110 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc--cCc-ccHH
Confidence 467788899994443 5999999 9999975 799987532 235999999874 566 8999
Q ss_pred HHHHhh---cCCCH----HHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 63 EYLMKL---FNLPY----EKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 63 e~~~~~---~~~~~----~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
+++... .+... ..+.++++.+++. ...+ +++.+|||||||||+|||||+.+|+++||||||+|||+.+
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 189 (258)
T PRK14268 111 DNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLK-SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189 (258)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 988532 22222 2356789999884 2334 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .++.+++
T Consensus 190 ~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 240 (258)
T PRK14268 190 TARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE-FGQTRQI 240 (258)
T ss_pred HHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999875 4699999999999999999999999999864 5666554
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=225.11 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=142.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccC----CcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTP----NKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p----~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++...+.+..++.+++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 103 (254)
T PRK10418 24 LTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHAR 103 (254)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHH
Confidence 3466788899994443 5999999 9999999 999997643 24699999987422345567766653
Q ss_pred h---hcCC--CHHHHHHHHHhCCCCC---ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 K---LFNL--PYEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~---~~~~--~~~~~~~~l~~~gl~~---~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
. ..+. ..+.+.++++.+++.+ ..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (254)
T PRK10418 104 ETCLALGKPADDATLTAALEAVGLENAARVLK-LYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182 (254)
T ss_pred HHHHHcCCChHHHHHHHHHHHcCCCChhhhhh-cCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence 2 1222 2345778999999976 234 47899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||++||+++.+..+||++++|++|+++. .++.+++
T Consensus 183 L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 228 (254)
T PRK10418 183 LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE-QGDVETL 228 (254)
T ss_pred HHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 8764 5699999999999999999999999999864 5666654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=254.92 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=145.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------------------CeEEEEEeCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------------------RLRIGKFDQHSGEH 54 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------------------~~~ig~v~q~~~~~ 54 (211)
+++..|..+.+++--. ++|||++ |+|+++|++|+|.... +..|||++|++...
T Consensus 37 ~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~ 116 (623)
T PRK10261 37 FSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTS 116 (623)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhh
Confidence 3567889999994443 5999999 9999999999986421 13599999987434
Q ss_pred CCCCCCHHHHHHhh----cCCCH----HHHHHHHHhCCCCC---ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCC
Q psy2681 55 LFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123 (211)
Q Consensus 55 l~~~~t~~e~~~~~----~~~~~----~~~~~~l~~~gl~~---~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEP 123 (211)
+++.+|+.+++... .+... +++.++++.+||.+ ..+ +++.+|||||||||+||+||+.+|++||||||
T Consensus 117 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEP 195 (623)
T PRK10261 117 LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILS-RYPHQLSGGMRQRVMIAMALSCRPAVLIADEP 195 (623)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHh-CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 67889999988532 12222 35677899999963 344 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 124 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 124 t~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|++||+.++..+.++|+++ +.|||+||||++++.++||++++|++|+++. .|++.++
T Consensus 196 t~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~-~g~~~~~ 256 (623)
T PRK10261 196 TTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE-TGSVEQI 256 (623)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc-cCCHHHh
Confidence 9999999999999998764 5699999999999999999999999999874 5666554
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=226.37 Aligned_cols=173 Identities=21% Similarity=0.267 Sum_probs=139.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.. |++|+|..++ +..++|++|++. +++ .|+
T Consensus 28 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 103 (253)
T PRK14242 28 EFEQNQVTALI-GPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN--PFP-KSI 103 (253)
T ss_pred EEeCCCEEEEE-CCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC--CCc-CcH
Confidence 46778888898 554 5999999 999864 5899997532 236999999874 565 589
Q ss_pred HHHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. . .+++.++++.+|+.+ ..+ +++.+|||||||||+||||++.+|+++||||||+|||+
T Consensus 104 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~ 182 (253)
T PRK14242 104 FENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLH-ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182 (253)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9887532 121 1 234567889999853 233 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++
T Consensus 183 ~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 235 (253)
T PRK14242 183 IATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE-VGPTEQI 235 (253)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999876 4699999999999999999999999999864 5666554
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=247.92 Aligned_cols=173 Identities=19% Similarity=0.232 Sum_probs=143.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC--CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP--NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p--~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++| ++|+|..++ +..+||++|++. +++.+|+.+++
T Consensus 27 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l 103 (506)
T PRK13549 27 KVRAGEIVSLC-GENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELA--LVKELSVLENI 103 (506)
T ss_pred EEeCCeEEEEE-CCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc--cCCCCcHHHHh
Confidence 45678888898 554 5999999 9999986 899997542 245999999874 77889999988
Q ss_pred Hhhc-----C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 66 MKLF-----N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 66 ~~~~-----~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.... . .. .+++.++++.+|+....++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 182 (506)
T PRK13549 104 FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT-PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVL 182 (506)
T ss_pred hhcccccccCCcCHHHHHHHHHHHHHHcCCCCCccc-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 5321 1 11 2346788999999876664 8899999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 136 AEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
.++|.++ +.|||++|||++++..+||++++|++|+++. .++.++
T Consensus 183 ~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~ 229 (506)
T PRK13549 183 LDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG-TRPAAG 229 (506)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee-eccccc
Confidence 9999765 5699999999999999999999999999864 455443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=248.93 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=143.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~ 66 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|+||++. ..+++.+|+.+++.
T Consensus 285 ~i~~Ge~~~l~-G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 285 EVRAGEILGLA-GVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 35678888899 665 5999999 9999999999997643 135899999752 23677888888764
Q ss_pred hh----cC---CC---HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 67 KL----FN---LP---YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 67 ~~----~~---~~---~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.. .. .. .+.+.++++.+|+. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l 442 (510)
T PRK15439 364 ALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE-QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDI 442 (510)
T ss_pred hhhhhhhccccChHHHHHHHHHHHHHcCCCCCCcc-CccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHH
Confidence 21 01 11 12466889999997 5555 48899999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 136 AEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.|+++ +.|||+||||++++.++||++++|++|+++. .++.+++
T Consensus 443 ~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~-~~~~~~~ 490 (510)
T PRK15439 443 YQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG-ALTGAAI 490 (510)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EEccccC
Confidence 9998865 6799999999999999999999999999874 4444443
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=228.73 Aligned_cols=177 Identities=16% Similarity=0.153 Sum_probs=138.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-c-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-F- 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~- 69 (211)
+++..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++........++.+++... .
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~ 107 (272)
T PRK15056 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYG 107 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccc
Confidence 3567888999994443 5999999 9999999999997653 1359999998642111223455554210 0
Q ss_pred -----CC----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 70 -----NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 70 -----~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. ....+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~ 186 (272)
T PRK15056 108 HMGWLRRAKKRDRQIVTAALARVDMVEFRHR-QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186 (272)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCChhHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 11 12345678999999876664 789999999999999999999999999999999999999999999997
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++ +.|||++|||++++.++|++++++ +|+++. .|+.+++
T Consensus 187 ~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~-~g~~~~~ 228 (272)
T PRK15056 187 ELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA-SGPTETT 228 (272)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHhc
Confidence 65 569999999999999999998776 898864 5666654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=226.50 Aligned_cols=174 Identities=22% Similarity=0.249 Sum_probs=141.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|..++ +.+++|++|++. +++ .|+
T Consensus 35 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv 110 (260)
T PRK10744 35 DIAKNQVTAFI-GPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT--PFP-MSI 110 (260)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc--cCc-CcH
Confidence 56678888898 554 6999999 999986 5899986532 246999999874 555 799
Q ss_pred HHHHHhh---c-CCCH----HHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---F-NLPY----EKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~-~~~~----~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... . .... +++.++++.+++. ...+ +++.+||||||||++||||++.+|+++||||||+|||+
T Consensus 111 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~ 189 (260)
T PRK10744 111 YDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLH-QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDP 189 (260)
T ss_pred HHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHh-cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCH
Confidence 9887532 1 1222 3466789999974 2334 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++..+.+.|+++ +.|||++||+++.+..+|+++++|++|+++. .|+.+++.
T Consensus 190 ~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 243 (260)
T PRK10744 190 ISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE-FGNTDTIF 243 (260)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999876 4699999999999999999999999999875 56666543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=249.01 Aligned_cols=175 Identities=22% Similarity=0.279 Sum_probs=143.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
+++.|..+.++ |-+ ++|||++ ++|++ |++|+|+.++ +..++|+||++...+++.+|+.+++
T Consensus 308 ~i~~Ge~~~i~-G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 308 TLRPGETLGLV-GESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 56778889999 554 5999999 99998 5899997543 2358999998632467788999988
Q ss_pred Hhh---cC--CC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 66 MKL---FN--LP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 66 ~~~---~~--~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
... +. .. ...+.++++.+|+.. ..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 464 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH-RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHH
Confidence 532 11 11 234678899999973 445 48899999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 136 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 136 ~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 465 ~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 513 (529)
T PRK15134 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE-QGDCERV 513 (529)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE-EcCHHHH
Confidence 9999754 5799999999999999999999999999864 5666554
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=224.41 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=131.4
Q ss_pred cCeeeeecCCC-Ccccccc-ccCcccCCc-----ceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 7 KLRIAVLQGLR-NPLSFIK-PKGELTPNK-----GELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 7 ~~~~~~i~~~~-~~sTLl~-i~G~~~p~~-----G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+-.-++|+==. ++|||++ +..+..... |+|...+ |+++|+|||.|. .|| +++++|+.
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn--PFp-~SIydNVa 109 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN--PFP-MSIYDNVA 109 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC--CCC-chHHHHHH
Confidence 33445663223 4899999 876655544 7776432 668999999986 455 89999987
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.. .+... +.+++.|+...|.+ .+++ ....||||||||+.||||++.+|++||||||||+|||.+...+
T Consensus 110 yG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~-sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kI 188 (253)
T COG1117 110 YGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHK-SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI 188 (253)
T ss_pred HhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhC-CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHH
Confidence 42 23322 33566777777753 3333 6778999999999999999999999999999999999999999
Q ss_pred HHHHHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceeeecCC
Q psy2681 136 AEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGD 177 (211)
Q Consensus 136 ~~~l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~ 177 (211)
.++|.+++ -||++|||++..+.+++|+.+++..|+++++..+
T Consensus 189 EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 189 EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 99999884 4999999999999999999999999999987433
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=245.14 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=144.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|++|++. +++.+|+.+++..
T Consensus 20 ~i~~Ge~~~li-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~ 96 (491)
T PRK10982 20 KVRPHSIHALM-GENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELN--LVLQRSVMDNMWL 96 (491)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccc--cccCCCHHHHhhc
Confidence 45678888888 554 5999999 9999999999997543 235999999874 6788899998753
Q ss_pred hc----C--CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LF----N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~----~--~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.. + .. .+++.++++.+|+....++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 175 (491)
T PRK10982 97 GRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRA-KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175 (491)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCccC-chhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 21 1 11 1246778999999876654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|+++ +.|||++|||++++..+||++++|++|+++. .++..+.
T Consensus 176 ~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 221 (491)
T PRK10982 176 IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA-TQPLAGL 221 (491)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe-ecChhhC
Confidence 99765 5699999999999999999999999999864 4554443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=221.98 Aligned_cols=167 Identities=26% Similarity=0.371 Sum_probs=135.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++ .|+.+++....
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~ 102 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVT--LFY-GTLRDNITLGA 102 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCc--ccc-chHHHHhhcCC
Confidence 456778888884343 5999999 9999999999997643 236999999875 454 58888875332
Q ss_pred -CCCHHHHHHHHHhCCCCCccccC----------CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
......+.++++.+++.+..+.. ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 182 (220)
T cd03245 103 PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182 (220)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 12344566788888887554431 2469999999999999999999999999999999999999999999
Q ss_pred HHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++. .|||++|||++++ ++||+++++++|+++.
T Consensus 183 l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 183 LRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred HHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 98863 5999999999987 6999999999998853
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=228.98 Aligned_cols=176 Identities=22% Similarity=0.273 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.+++.-. ++|||++ ++|+++|++|+|..++ +..+||+||++...++ ..++.+++...
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~ 110 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFG 110 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhh
Confidence 456778888885443 5999999 9999999999997542 2368999998742233 45788777532
Q ss_pred ---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.+.. ...+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 189 (280)
T PRK13633 111 PENLGIPPEEIRERVDESLKKVGMYEYRRH-APHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189 (280)
T ss_pred HhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1222 2346778999999877665 7899999999999999999999999999999999999999999999976
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ +.|||++|||++++.. ||++++|++|+++. .|+.+++.
T Consensus 190 l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~ 232 (280)
T PRK13633 190 LNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGTPKEIF 232 (280)
T ss_pred HHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 5 5699999999999976 99999999999864 57766654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=247.60 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=144.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~ 66 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. ..+++.+|+.+++.
T Consensus 275 ~i~~Ge~~~ii-G~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~ 353 (501)
T PRK11288 275 SVRAGEIVGLF-GLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNIN 353 (501)
T ss_pred EEeCCcEEEEE-cCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhc
Confidence 45678889999 665 5999999 9999999999998643 135899999863 23677889999874
Q ss_pred hhc-------C---CC---HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 67 KLF-------N---LP---YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 67 ~~~-------~---~~---~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
... + .. .+.+.++++.+++. +..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 432 (501)
T PRK11288 354 ISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE-QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAK 432 (501)
T ss_pred cccchhhcccccccChHHHHHHHHHHHHhcCcccCCcc-CccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHH
Confidence 210 1 01 13467899999994 4555 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
..+.++|.++ +.|||+||||++++.++|+++++|.+|+++. .+..+++.
T Consensus 433 ~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 484 (501)
T PRK11288 433 HEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG-ELAREQAT 484 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE-EEccccCC
Confidence 9999998654 6799999999999999999999999999864 45555443
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=222.92 Aligned_cols=175 Identities=25% Similarity=0.333 Sum_probs=145.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
++..|+.+.++ |-+ ++|||++ |+|.++|++|+|..++ +..++|++|++. +++..|+.+++....
T Consensus 22 ~i~~Ge~~~l~-G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~enl~~~~~ 98 (237)
T TIGR00968 22 EVPTGSLVALL-GPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYA--LFKHLTVRDNIAFGLE 98 (237)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChh--hccCCcHHHHHHhHHH
Confidence 46678888888 554 5999999 9999999999997532 246999999874 677789998875321
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
+.. .+.+.++++.+++....++ .+.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~ 177 (237)
T TIGR00968 99 IRKHPKAKIKARVEELLELVQLEGLGDR-YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLH 177 (237)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 222 2345678999999866654 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++||+++++.++||++++|++|+++. .++.+++.
T Consensus 178 ~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 219 (237)
T TIGR00968 178 DEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ-IGSPDEVY 219 (237)
T ss_pred HhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE-ecCHHHHH
Confidence 5799999999999999999999999999875 56666553
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=225.02 Aligned_cols=175 Identities=21% Similarity=0.186 Sum_probs=141.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..|..+.+++.-. ++|||++ ++|+++| ++|+|..++ +..++|++|++. +++..|+.+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e 104 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN--PFPHLTIYD 104 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc--cCCCCcHHH
Confidence 56788888884443 5999999 9999987 499997532 236999999875 677889999
Q ss_pred HHHhh---cCC--CH----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 64 YLMKL---FNL--PY----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 64 ~~~~~---~~~--~~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
++... .+. .. ..+.++++.+|+.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 183 (253)
T PRK14267 105 NVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLN-DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhc-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 88532 111 11 24567888898842 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++..+.+.|+++ +.|||++|||++++..+||++++|++|+++. .|+..++.
T Consensus 184 ~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (253)
T PRK14267 184 GTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVF 236 (253)
T ss_pred HHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999876 4699999999999999999999999999974 56665543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=246.30 Aligned_cols=178 Identities=24% Similarity=0.301 Sum_probs=145.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcc--cCCcceEEecC--------------------------------------
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGEL--TPNKGELRKSP-------------------------------------- 40 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~--~p~~G~i~~~~-------------------------------------- 40 (211)
.+..|..+.+++--. ++|||++ |+|++ +|++|+|....
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 101 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD 101 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCH
Confidence 456788899994443 5999999 99997 79999987530
Q ss_pred ------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHH
Q psy2681 41 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 107 (211)
Q Consensus 41 ------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~i 107 (211)
+..++|+||++. .+++.+|+.+++... .+.. .+++.++++.+|+++..++ ++.+|||||||||+|
T Consensus 102 ~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGq~qrv~i 179 (520)
T TIGR03269 102 KLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITH-IARDLSGGEKQRVVL 179 (520)
T ss_pred HHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-CcccCCHHHHHHHHH
Confidence 235899999732 367778999887532 2222 2346778999999876664 789999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 108 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 108 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
||||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++.++||++++|++|+++. .|+++++..
T Consensus 180 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 258 (520)
T TIGR03269 180 ARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE-EGTPDEVVA 258 (520)
T ss_pred HHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee-ecCHHHHHH
Confidence 99999999999999999999999999998888754 5699999999999999999999999999864 677776644
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=220.07 Aligned_cols=163 Identities=25% Similarity=0.337 Sum_probs=136.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---c
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~ 69 (211)
++..|.++.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++..|+.+++... .
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~ 110 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG--LKADLSTLENLHFLCGLH 110 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcc--cccCCcHHHHHHHHHHhc
Confidence 467788898994443 5999999 9999999999997653 235899999864 67778999887532 1
Q ss_pred CC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 70 NL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 70 ~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
+. ....+.++++.+++.+..+. ++.+||||||||++||||++.+|+++||||||++||+.++..+.++|.++ +.|
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 111 GRRAKQMPGSALAIVGLAGYEDT-LVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189 (214)
T ss_pred CCcHHHHHHHHHHHcCChhhccC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 22 23456788999999876654 78999999999999999999999999999999999999999999999765 679
Q ss_pred EEEEecChHHHHhhCCeEEEEeC
Q psy2681 146 VILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~ 168 (211)
||++|||++++.++|++++++..
T Consensus 190 iii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 190 ALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999998753
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=248.42 Aligned_cols=175 Identities=27% Similarity=0.485 Sum_probs=142.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHH-------------
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM------------- 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~------------- 66 (211)
++..|.++.++ |-+ ++|||++ |+|.++|++|+|.......++|++|.+. .....++.+++.
T Consensus 25 ~i~~Ge~v~Lv-G~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~--~~~~~~v~~~~~~~~~~~~~~~~~~ 101 (635)
T PRK11147 25 HIEDNERVCLV-GRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP--RNVEGTVYDFVAEGIEEQAEYLKRY 101 (635)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCC--CCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 46678999999 554 5999999 9999999999998876556899988653 112223333210
Q ss_pred -----------------h-------hc---C-CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy2681 67 -----------------K-------LF---N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118 (211)
Q Consensus 67 -----------------~-------~~---~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~ll 118 (211)
. .. . ....++.++++.+|+.. + +++.+|||||||||+||+||+.+|++|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~-~~~~~LSgGekqRv~LAraL~~~P~lL 178 (635)
T PRK11147 102 HDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--D-AALSSLSGGWLRKAALGRALVSNPDVL 178 (635)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--C-CchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 0 00 0 01235677899999963 3 488999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 119 ILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 119 lLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
||||||||||+.++.++.++|++++.|||+||||++++..+|+++++|++|+++.+.|+++.|.+
T Consensus 179 LLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 179 LLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999878899887654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=244.85 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=140.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC--CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP--NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p--~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+| ++|+|..++ +..+||+||++. +++.+|+.+++
T Consensus 23 ~i~~Ge~~~li-G~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l 99 (500)
T TIGR02633 23 EVRPGECVGLC-GENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELT--LVPELSVAENI 99 (500)
T ss_pred EEeCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccc--cCCCCcHHHHH
Confidence 35678888888 554 5999999 9999987 799997643 235999999874 67889999987
Q ss_pred Hhhc-----C--CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 66 MKLF-----N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 66 ~~~~-----~--~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
.... . .. ..++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~ 179 (500)
T TIGR02633 100 FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179 (500)
T ss_pred HhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 5321 1 11 13466789999997654344789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.+.|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 180 l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 180 LLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred HHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 99998765 5699999999999999999999999999864
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=245.26 Aligned_cols=166 Identities=22% Similarity=0.262 Sum_probs=140.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++. +++.+|+.+++...
T Consensus 27 i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~~l~~~ 103 (501)
T PRK11288 27 CRAGQVHALM-GENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELH--LVPEMTVAENLYLG 103 (501)
T ss_pred EeCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechh--ccCCCCHHHHHHhc
Confidence 4567788888 554 5999999 9999999999997542 246999999864 77888999988632
Q ss_pred c-----C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 F-----N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~-----~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
. + .. .+++.++++.+|+....++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++.++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 182 (501)
T PRK11288 104 QLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182 (501)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 1 1 11 2346778999999866554 7899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 183 l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 183 IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9865 5699999999999999999999999999864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=247.20 Aligned_cols=176 Identities=16% Similarity=0.224 Sum_probs=142.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-CCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-PNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|..+. +..++|++|++. ..+++++|+.+++
T Consensus 284 ~i~~Ge~~~l~-G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIA-GLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEe-CCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 45678888888 665 5999999 999998 5999998642 234899999863 2367788999987
Q ss_pred Hhh-----cC---CC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 66 MKL-----FN---LP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 66 ~~~-----~~---~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
... .. .. .+.+.++++.+++. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~ 441 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPE-LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAK 441 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcc-cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHH
Confidence 521 11 11 13467889999996 3555 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.++|.++ +.|||++|||++++.++||++++|.+|+++. .++.+++
T Consensus 442 ~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 492 (506)
T PRK13549 442 YEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG-DLINHNL 492 (506)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EeccccC
Confidence 9999998754 6799999999999999999999999999863 4555544
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=210.05 Aligned_cols=165 Identities=25% Similarity=0.271 Sum_probs=139.5
Q ss_pred ccccCeeeeecCC-CCcccccc-ccCcccCCcceEEec---------------CCeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKS---------------PRLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~---------------~~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..++.+.|++-= -++|||+- ++|+..|++|+|+.. ..+++|+|||... +.|++|..||+.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~--Lip~ltAlENV~ 110 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH--LIPNLTALENVA 110 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee--ccccchhhhhcc
Confidence 3567888888333 35999999 999999999999853 2457999999864 899999999985
Q ss_pred hh---cC----CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+ .....+.++|+.+||...... +|.+|||||+|||+||||++..|++||.||||.+||..+-.++.+++
T Consensus 111 lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLl 189 (228)
T COG4181 111 LPLELRGESSADSRAGAKALLEAVGLGKRLTH-YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189 (228)
T ss_pred chhhhcCCccccHHHHHHHHHHHhCccccccc-CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHH
Confidence 32 22 124457889999999987776 78999999999999999999999999999999999999999999988
Q ss_pred Hh----cCCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 140 KN----YQGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 140 ~~----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
-. .+.|+++||||...+.+ |+|++.|.+|+++
T Consensus 190 F~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 190 FALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred HHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 44 46799999999999976 6899999999985
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=224.00 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=142.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+++..|..+.+++.-. ++|||++ |+|+.+| ++|+|..+. +..++|++|++. +++..|+
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv 102 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN--PFPTMSI 102 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc--cCCCCcH
Confidence 4567889999994443 5999999 9999974 699997532 235999999864 6778899
Q ss_pred HHHHHhh---cCC-CH----HHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-PY----EKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~~----~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. .. +.+.++++.+|+. ...+ +++.+|||||||||+||||++.+|+++||||||+|||+
T Consensus 103 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 181 (258)
T PRK14241 103 RDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLD-KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP 181 (258)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 9987532 121 11 2456788889884 2334 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe------CCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE------KKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~------~g~i~~~~g~~~~~ 181 (211)
.++..+.++|+++ +.|||++||+++++.++||++++|+ +|+++. .++..++
T Consensus 182 ~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~~~ 240 (258)
T PRK14241 182 ISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTEKI 240 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCHHHH
Confidence 9999999999876 4699999999999999999999997 788864 5666654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=220.44 Aligned_cols=174 Identities=22% Similarity=0.326 Sum_probs=136.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..++|++|++. ++ ..|+.+++....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~ 100 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV--LF-NRSIRDNIALAD 100 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCch--hc-cchHHHHhhccC
Confidence 466788888984443 5999999 9999999999997653 246999999874 44 468998885321
Q ss_pred -CCCHHHHH---------HHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSR---------RQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~---------~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
......+. ++++.+ ++....+. ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 179 (237)
T cd03252 101 PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179 (237)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 12222222 233444 44444443 789999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++. .|+++++|++|+++. .++.+++.
T Consensus 180 ~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~~~~~~~~ 224 (237)
T cd03252 180 NMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVE-QGSHDELL 224 (237)
T ss_pred HHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-EcCHHHHH
Confidence 99876 469999999999996 599999999999874 56766554
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=245.46 Aligned_cols=176 Identities=20% Similarity=0.255 Sum_probs=143.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~ 66 (211)
++..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++. ..+++.+|+.+++.
T Consensus 274 ~i~~Ge~~~li-G~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 352 (501)
T PRK10762 274 TLRKGEILGVS-GLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 (501)
T ss_pred EEcCCcEEEEe-cCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhh
Confidence 45678888888 554 5999999 9999999999998643 135999999863 23677889998875
Q ss_pred hh----c-C----CC----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 67 KL----F-N----LP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 67 ~~----~-~----~~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
.. . . .. .+++.++++.+|+. ...+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~ 431 (501)
T PRK10762 353 LTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSME-QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAK 431 (501)
T ss_pred hhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCcc-CchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHH
Confidence 31 1 1 11 23467889999995 4555 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
..+.++|+++ +.|||++|||++++..+||++++|++|+++. .++..++
T Consensus 432 ~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 482 (501)
T PRK10762 432 KEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG-EFTREQA 482 (501)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE-EeccccC
Confidence 9999999875 4699999999999999999999999999864 4444443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=226.71 Aligned_cols=174 Identities=24% Similarity=0.318 Sum_probs=142.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++. ..++..|+.+++...
T Consensus 31 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~enl~~~ 108 (271)
T PRK13632 31 EINEGEYVAIL-GHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPD-NQFIGATVEDDIAFG 108 (271)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHH-HhcCcccHHHHHHhH
Confidence 46678888888 554 5999999 9999999999997532 346999999862 135568999987532
Q ss_pred ---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 ---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 ---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
..... ..+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 109 LENKKVPPKKMKDIIDDLAKKVGMEDYLDK-EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12222 235678999999876665 7899999999999999999999999999999999999999999999986
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+ +.|||++||+++.+. .|+++++|++|+++. .|+.+++
T Consensus 188 ~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 229 (271)
T PRK13632 188 LRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA-QGKPKEI 229 (271)
T ss_pred HHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE-ecCHHHH
Confidence 5 369999999999986 799999999999864 4665554
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=219.82 Aligned_cols=174 Identities=24% Similarity=0.273 Sum_probs=136.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.++.|..+.+++--. ++|||++ |+|+.+|++|+|..+. +..++|++|++. ++.. |+.+++....
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~-tv~~~~~~~~ 101 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF--LFSG-TIMENIRLGR 101 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch--hhhh-HHHHHHhccC
Confidence 467788899994443 5999999 9999999999997643 345999999874 5554 8888876432
Q ss_pred C-CCHHHHHHHHHhC-----------CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 N-LPYEKSRRQLGMF-----------GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ~-~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .....+.+.++.+ ++.....+ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 180 (229)
T cd03254 102 PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGE-NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180 (229)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 2 2233344444444 34433333 578999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++||+++++.. |+++++|++|+++. .++.+++.
T Consensus 181 ~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~-~~~~~~~~ 225 (229)
T cd03254 181 ALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIE-EGTHDELL 225 (229)
T ss_pred HHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 99876 4699999999999965 99999999999864 56665543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=223.16 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=140.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc---CCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT---PNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~---p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
++..|..+.+++.-. ++|||++ ++|+++ |++|+|..++ +..++|+||++. +++ .|+.+++.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~--l~~-~tv~eni~ 100 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN--VFV-KSIYENIS 100 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCc--ccc-ccHHHHhh
Confidence 456788888884333 5999999 999974 7999997542 346999999875 565 69999875
Q ss_pred hh---cCC--C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 67 KL---FNL--P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 67 ~~---~~~--~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
.. .+. . ..++.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+.++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~ 179 (246)
T PRK14269 101 YAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSG 179 (246)
T ss_pred hHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 32 111 1 124567899999953 233 367899999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 134 ALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 134 ~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+.+.|+++ +.|||++||+++++.++||++++|++|+++. .|+..++
T Consensus 180 ~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 228 (246)
T PRK14269 180 VIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE-FGESKEF 228 (246)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE-ECCHHHH
Confidence 999999875 5799999999999999999999999999975 4665554
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=241.34 Aligned_cols=178 Identities=22% Similarity=0.261 Sum_probs=146.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC----cceEEecC---------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN----KGELRKSP---------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~----~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|+...+++-=. ++||+.+ +.|++++. +|+|..++ .+.|+|+||+|...+.|-+++
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 356788888884333 5999999 99999887 79996542 357999999998777887887
Q ss_pred HHHHHh---hc-CCC----HHHHHHHHHhCCCCCcccc-CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 62 CEYLMK---LF-NLP----YEKSRRQLGMFGLPSYAHT-IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 62 ~e~~~~---~~-~~~----~~~~~~~l~~~gl~~~~~~-~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
.+.+.. .. ... .+++.++|+++||++.... +++++|||||||||.||+||+.+|++||+||||++||+..+
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q 190 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHH
Confidence 665532 11 122 3456789999999875542 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 133 DALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.+++++|+++ +.++|+||||+..+.++|||+++|.+|++++ .|+.+++
T Consensus 191 ~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE-~G~~~~i 242 (539)
T COG1123 191 AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE-TGPTEEI 242 (539)
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE-ecCHHHH
Confidence 9999999865 6799999999999999999999999999986 5666553
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-32 Score=218.53 Aligned_cols=159 Identities=25% Similarity=0.322 Sum_probs=131.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|...+ +..++|++|++. +++..|+.++
T Consensus 20 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~e~ 96 (206)
T TIGR03608 20 TIEKGKMYAII-GESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA--LIENETVEEN 96 (206)
T ss_pred EEeCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh--hccCCcHHHH
Confidence 46778888888 554 5999999 9999999999996532 235999999875 6778899988
Q ss_pred HHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+.. .+++.++++.+|+++..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 175 (206)
T TIGR03608 97 LDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-KIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLD 175 (206)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHH
Confidence 7532 1221 2346788999999877664 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEE
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
.|+++ +.|||++||+++.+ ..|+++++|
T Consensus 176 ~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 176 LLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred HHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99875 56999999999976 578988764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=221.83 Aligned_cols=175 Identities=20% Similarity=0.243 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+++.|..+.+++.-. ++|||++ ++|+.+ .+|+|..++ +..++|++|++. +++..|+.+++....
T Consensus 18 ~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~ 94 (248)
T PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQT--PPFAMPVFQYLTLHQ 94 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCc--cCCCccHHHHHHhcC
Confidence 467788888884443 5999999 999985 589997543 135899999864 566789999876431
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc-------CCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~-------~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
... .+.+.++++.+|+.+..++ ++.+||||||||++||+|++. +|+++||||||+|||+.++..+.
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~ 173 (248)
T PRK03695 95 PDKTRTEAVASALNEVAEALGLDDKLGR-SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD 173 (248)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCHhHhcC-CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH
Confidence 111 2346788999999876654 789999999999999999997 77999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 174 ~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 221 (248)
T PRK03695 174 RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA-SGRRDEVL 221 (248)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 999765 4699999999999999999999999999864 56666553
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=225.57 Aligned_cols=175 Identities=23% Similarity=0.295 Sum_probs=141.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++...+++..++.+++
T Consensus 34 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l 112 (268)
T PRK10419 34 SLKSGETVALL-GRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII 112 (268)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHH
Confidence 35667788888 554 5999999 9999999999997542 2369999998743356677888876
Q ss_pred Hhh----cCCC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 66 MKL----FNLP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 66 ~~~----~~~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
... .... ...+.++++.+|+.. ..+ +++.+||||||||++|||||+.+|++|||||||+|||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~ 191 (268)
T PRK10419 113 REPLRHLLSLDKAERLARASEMLRAVDLDDSVLD-KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191 (268)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhh-CCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 421 1222 234678999999963 444 478999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+.|+++ +.|||++||+++++.++||++++|++|+++. .|+.++
T Consensus 192 ~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~ 238 (268)
T PRK10419 192 RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE-TQPVGD 238 (268)
T ss_pred HHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee-eCChhh
Confidence 988754 5699999999999999999999999999864 455544
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=226.64 Aligned_cols=175 Identities=23% Similarity=0.282 Sum_probs=142.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCc---ceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNK---GELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~---G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
++..|..+.+++.-. ++|||++ |+|+++|++ |+|..++ +..+||++|++. .+++..|+.+++.
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~-~~~~~~tv~enl~ 107 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPD-NQFVGATVGDDVA 107 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHH-HhhccCCHHHHHH
Confidence 356788899994443 5999999 999999987 8987532 246999999873 2456789999885
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+... +.+.++++.+|+.+..++ ++.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l 186 (282)
T PRK13640 108 FGLENRAVPRPEMIKIVRDVLADVGMLDYIDS-EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI 186 (282)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHCCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 32 22222 346778999999877664 78999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+++ +.|||++||+++++. .||++++|++|+++. .|+.+++
T Consensus 187 ~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~ 230 (282)
T PRK13640 187 RKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEI 230 (282)
T ss_pred HHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHH
Confidence 764 569999999999995 799999999999975 5666554
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.3e-32 Score=221.06 Aligned_cols=160 Identities=26% Similarity=0.312 Sum_probs=132.2
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|..+.++ |-+ ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++ .|+.+++..
T Consensus 28 ~~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~enl~~ 103 (225)
T PRK10247 28 FSLRAGEFKLIT-GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPT--LFG-DTVYDNLIF 103 (225)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccc--ccc-ccHHHHHHh
Confidence 456778888898 554 5999999 9999999999997553 246899999865 555 599998753
Q ss_pred h---cCC--CHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 68 L---FNL--PYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 68 ~---~~~--~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
. ... ....+.++++.+++.. ..+ +++.+|||||+|||+||||++.+|+++||||||+|||+.++..+.+.|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 104 PWQIRNQQPDPAIFLDDLERFALPDTILT-KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred HHhhcCCChHHHHHHHHHHHcCCChHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1 121 2345678999999964 444 47899999999999999999999999999999999999999999998876
Q ss_pred c----CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 142 Y----QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 142 ~----~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
+ +.|||++|||.+++. .||++++|+
T Consensus 183 ~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 183 YVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred HHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 4 569999999999996 699999995
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-32 Score=226.32 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=141.4
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. .+++..++.+++...
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~~v~~~~~~~~~ 110 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPD-NQFVGSIVKYDVAFGLE 110 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChH-HhcccccHHHHHHhhHH
Confidence 46778888884443 5999999 9999999999998643 235899999863 245667777776422
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.... .+.+.++++.+|+.+..+. ++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 189 (269)
T PRK13648 111 NHAVPYDEMHRRVSEALKQVDMLERADY-EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK 189 (269)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1222 2345678999999876664 78999999999999999999999999999999999999999999999764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++||+++++.. ||++++|++|+++. .|+.+++.
T Consensus 190 ~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~ 230 (269)
T PRK13648 190 SEHNITIISITHDLSEAME-ADHVIVMNKGTVYK-EGTPTEIF 230 (269)
T ss_pred HhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 5699999999999986 99999999999974 56666543
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=218.11 Aligned_cols=162 Identities=24% Similarity=0.302 Sum_probs=135.2
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+++..|..+.+++.-. ++|||++ |+|..+|++|+|..+. +..++|++|.+. +++.+|+.+++....
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~ 99 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPG--IKTELTALENLRFYQ 99 (204)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccc--cCcCCcHHHHHHHHH
Confidence 4567788888984443 5999999 9999999999997643 235899999864 677889999875321
Q ss_pred ---C-CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q psy2681 70 ---N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--- 142 (211)
Q Consensus 70 ---~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--- 142 (211)
+ .....+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.++|+++
T Consensus 100 ~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 178 (204)
T PRK13538 100 RLHGPGDDEALWEALAQVGLAGFEDV-PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQ 178 (204)
T ss_pred HhcCccHHHHHHHHHHHcCCHHHhhC-ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 2 234567789999999876654 78999999999999999999999999999999999999999999999875
Q ss_pred CCeEEEEecChHHHHhhCCeEEEE
Q psy2681 143 QGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
+.|||++|||.+++.....|++.+
T Consensus 179 ~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 179 GGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEEecChhhhccCCceEEec
Confidence 579999999999998877777665
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=245.75 Aligned_cols=169 Identities=19% Similarity=0.278 Sum_probs=139.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-CcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-NKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~ 65 (211)
++..|..+.++ |-+ ++|||++ |+|+++| ++|+|..+. +.++||++|++. ..+++.+|+.+++
T Consensus 282 ~i~~Ge~~~l~-G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~ 360 (500)
T TIGR02633 282 SLRRGEILGVA-GLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360 (500)
T ss_pred EEeCCcEEEEe-CCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence 45677888888 665 5999999 9999995 899997643 235899999862 2367888998887
Q ss_pred Hhh----c----CCC----HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 66 MKL----F----NLP----YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 66 ~~~----~----~~~----~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
... . ... ...+.++++.+++.. ..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~ 439 (500)
T TIGR02633 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF-LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAK 439 (500)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCcc-CccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHH
Confidence 421 1 111 134678899999964 444 48899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
..+.++|+++ +.|||++|||++++.++||++++|++|+++.
T Consensus 440 ~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 440 YEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999888764 6799999999999999999999999999864
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=221.43 Aligned_cols=175 Identities=18% Similarity=0.218 Sum_probs=141.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc--C---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT--P---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+ | ++|+|..++ +..++|+||++. +++..|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~ 103 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN--PFPAMSIY 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC--CCCcCcHH
Confidence 466788888884333 5999999 999986 4 689987432 335999999875 67888999
Q ss_pred HHHHhh---cC-CC----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FN-LP----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~-~~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+ .. .+.+.++++.+++.. ..+ ..+.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~ 182 (252)
T PRK14256 104 DNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 182 (252)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 988532 11 11 134567888999853 233 378999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++||+++++.++||++++|.+|+++. .++.+++
T Consensus 183 ~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 234 (252)
T PRK14256 183 STLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE-CGETKKI 234 (252)
T ss_pred HHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 5699999999999999999999999999865 4665554
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-31 Score=223.26 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=139.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 117 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN--PFP-KSIY 117 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC--CCC-CcHH
Confidence 356788888884443 6999999 9999975 899997532 235899999875 555 4898
Q ss_pred HHHHhh---cCC--C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 63 EYLMKL---FNL--P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 63 e~~~~~---~~~--~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
+++... .+. . ...+.++++.+|+.. ..+ +++.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 118 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14235 118 ENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP 196 (267)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 887532 111 1 234567899999953 233 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++|||++++..+|+++++|++|+++. .|+.+++
T Consensus 197 ~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14235 197 IATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE-VGDTEKM 249 (267)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999876 4699999999999999999999999999874 5665554
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=223.84 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=138.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+ |++|+|..++ +..++|++|++. +++ .|+.
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 119 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN--PFP-KSIY 119 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc--cCc-ccHH
Confidence 356788888994443 5999999 999864 6899996532 236999999875 555 4888
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... ... . ...+.++++.+++. ...+ +++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 120 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~ 198 (268)
T PRK14248 120 NNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH-SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPI 198 (268)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHh-cCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHH
Confidence 887532 111 1 12356678888874 2233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.++|+++ +.|||++|||++++.++|+++++|++|+++. .++.+++
T Consensus 199 ~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 250 (268)
T PRK14248 199 SNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE-YDQTEQI 250 (268)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999865 5666554
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=221.76 Aligned_cols=174 Identities=20% Similarity=0.217 Sum_probs=138.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcc--cC---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGEL--TP---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~--~p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
++..|..+.+++.-. ++|||++ |+|+. .| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 103 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN--PFP-MSIY 103 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc--cCc-CcHH
Confidence 467788999994343 5999999 99985 46 489987542 236999999875 555 7999
Q ss_pred HHHHhh---cCCC-----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNLP-----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~~-----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+.. ...+.++++.+++.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 182 (252)
T PRK14239 104 ENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLH-DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182 (252)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 987532 1211 123456788888742 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.++|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 183 ~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 234 (252)
T PRK14239 183 SAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE-YNDTKQM 234 (252)
T ss_pred HHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999875 5666554
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=225.48 Aligned_cols=176 Identities=20% Similarity=0.245 Sum_probs=142.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..+||++|++. .+++..|+.+++...
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~ 107 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPD-NQFVGATVEDDVAFGM 107 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHH-HhhccCCHHHHHHhhH
Confidence 345677888884443 5999999 9999999999997542 346999999863 235567899888532
Q ss_pred --cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+... +.+..+++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 108 ENQGIPREEMIKRVDEALLAVNMLDFKTR-EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHhHhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 12222 245678999999876654 78999999999999999999999999999999999999999999998754
Q ss_pred ----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||++|||++++. .|+++++|++|+++. .|+.+++.
T Consensus 187 ~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 228 (277)
T PRK13642 187 KEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK-EAAPSELF 228 (277)
T ss_pred HHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 569999999999997 599999999999864 56666543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-31 Score=221.24 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=140.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 102 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN--PFP-MSIY 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC--cCC-CcHH
Confidence 456788888884443 5999999 9999875 789987532 235999999875 565 8999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . ...+.++++.+++. +..+ +++.+||+|||||++||||++.+|+++||||||+|||+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 181 (251)
T PRK14270 103 DNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLK-KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPI 181 (251)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 987532 221 1 12356788999874 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++|+++++|++|+++. .++.++.
T Consensus 182 ~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14270 182 STLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE-FNKTEKI 233 (251)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999875 4666554
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=217.95 Aligned_cols=163 Identities=22% Similarity=0.307 Sum_probs=134.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEec--C-----------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKS--P-----------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~--~-----------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..+ . +..++|++|++. +++.+|+
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv 107 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR--VIPRVSA 107 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc--cCCCccH
Confidence 567888999995553 5999999 999999999999764 1 135899999875 7788899
Q ss_pred HHHHHhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 62 CEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 62 ~e~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
.+++... .+.. .+.+.++++.+|+.....++++.+||||||||++||||++.+|+++||||||+|||+.++..
T Consensus 108 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 187 (224)
T TIGR02324 108 LEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 9887531 2222 23456789999997643334789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
+.+.|+++ +.|||++||+.+++..+||+++.+.
T Consensus 188 l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 188 VVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999865 5699999999999999999988763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=218.21 Aligned_cols=174 Identities=24% Similarity=0.279 Sum_probs=137.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++ .|+.+++....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~ 100 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVF--LFN-DTVAENIAYGR 100 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCe--ecc-ccHHHHhhccC
Confidence 356778888884443 5999999 9999999999997643 235999999874 554 69999885321
Q ss_pred -CCCHHHH---------HHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKS---------RRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~---------~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
......+ .++++.+ ++....+. ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 179 (234)
T cd03251 101 PGATREEVEEAARAANAHEFIMELPEGYDTVIGE-RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179 (234)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhcccCcceeecc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 1122222 2344444 56555554 689999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++.. ||++++|++|+++. .++.+++.
T Consensus 180 ~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~-~~~~~~~~ 224 (234)
T cd03251 180 ALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE-RGTHEELL 224 (234)
T ss_pred HHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEee-eCCHHHHH
Confidence 99876 5699999999999976 99999999999864 56666553
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=225.52 Aligned_cols=174 Identities=21% Similarity=0.246 Sum_probs=144.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ |+|+++ ++|+|..+. +..++|+||++. +|+ .|+.+|+...
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~--lf~-~tv~~nl~~~ 100 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVF--IFS-GTFRKNLDPY 100 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcc--cch-hhHHHHhhhc
Confidence 4678899999994332 5999999 999997 789998653 346999999975 565 5889988533
Q ss_pred cCCCHHHHHHHHHhCCCCCccccCCCCC-----------CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHTIPIRD-----------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.....+.+.++++.+|+....+. .+.. ||||||||++||||++.+|+++||||||++||+.+...+.+
T Consensus 101 ~~~~~~~~~~~l~~~gL~~~~~~-~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~ 179 (275)
T cd03289 101 GKWSDEEIWKVAEEVGLKSVIEQ-FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179 (275)
T ss_pred cCCCHHHHHHHHHHcCCHHHHHh-CcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHH
Confidence 33456677888999999876654 5555 99999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|||+|||+++.+.. ||++++|++|+++. .|+++++.
T Consensus 180 ~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~-~g~~~~l~ 224 (275)
T cd03289 180 TLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQ-YDSIQKLL 224 (275)
T ss_pred HHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEee-cCCHHHHh
Confidence 99864 5699999999999875 99999999999976 46666544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=219.19 Aligned_cols=165 Identities=24% Similarity=0.305 Sum_probs=136.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|....+++.-. ++|||++ |+|.++|++|+|..++ +..++|++|++. +++..|+.+++.
T Consensus 27 ~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~n~~ 104 (220)
T TIGR02982 27 EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHN--LLGFLTARQNVQ 104 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChh--hcCCCCHHHHHH
Confidence 356678888884443 5999999 9999999999997542 246999999875 677789998875
Q ss_pred hh---cC-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL---FN-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~---~~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .. .. ...+.++++.+|+.+..+. ++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 183 (220)
T TIGR02982 105 MALELQPNLSYQEARERARAMLEAVGLGDHLDY-YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL 183 (220)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 32 11 22 2346788999999876664 7899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
|+++ +.|||++||+++.. ++||++++|++|++
T Consensus 184 l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 184 MQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 8764 57999999999864 79999999999875
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=218.12 Aligned_cols=166 Identities=22% Similarity=0.250 Sum_probs=134.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
++..|..+.++ |-+ ++|||++ |+|..+|++|+|..+. +..++|++|++. +++ .|+.+++...
T Consensus 26 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~ 101 (221)
T cd03244 26 SIKPGEKVGIV-GRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPV--LFS-GTIRSNLDPF 101 (221)
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCc--ccc-chHHHHhCcC
Confidence 35667788888 554 5999999 9999999999997543 346999999875 454 5888887533
Q ss_pred cCCCHHHHHHHHHhCCCCCccc----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
......++.+.++.+++.+... .+++..||+|||||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 181 (221)
T cd03244 102 GEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 181 (221)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 2334455666666666654321 136789999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++ +.|||++||+.+++.. |+++++|++|+++.
T Consensus 182 l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~ 217 (221)
T cd03244 182 IREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVE 217 (221)
T ss_pred HHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEe
Confidence 9876 4699999999999976 89999999999864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=215.39 Aligned_cols=161 Identities=25% Similarity=0.312 Sum_probs=135.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++..|+.+++.....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~ 99 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPG--IKTTLSVLENLRFWHA 99 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccc--cCCCcCHHHHHHhhcc
Confidence 356788899994443 5999999 9999999999997542 236999999864 6778899998864322
Q ss_pred -CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeE
Q psy2681 71 -LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGV 146 (211)
Q Consensus 71 -~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ti 146 (211)
...+.+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|+
T Consensus 100 ~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ti 178 (201)
T cd03231 100 DHSDEQVEEALARVGLNGFEDR-PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMV 178 (201)
T ss_pred cccHHHHHHHHHHcCChhhhcC-chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 234567889999999876654 78999999999999999999999999999999999999999999999765 5799
Q ss_pred EEEecChHHHHhhCCeEEEE
Q psy2681 147 ILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l 166 (211)
|++|||...+..+|++++.+
T Consensus 179 ii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 179 VLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEecCchhhhhccceeEec
Confidence 99999999999999998765
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=217.52 Aligned_cols=167 Identities=22% Similarity=0.245 Sum_probs=137.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc---CCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT---PNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~---p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|.... +..++|++|++. +++.+|+.+++...
T Consensus 29 ~i~~Ge~~~l~-G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~--~~~~~tv~enl~~~ 105 (226)
T cd03234 29 HVESGQVMAIL-GSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDI--LLPGLTVRETLTYT 105 (226)
T ss_pred EEcCCeEEEEE-CCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCc--cCcCCcHHHHHHHH
Confidence 35667778888 553 5999999 999999 9999997643 356999999865 67888999988531
Q ss_pred ---cC---CCH----HHHHH-HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 ---FN---LPY----EKSRR-QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ---~~---~~~----~~~~~-~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.. ... ..+.+ .++.+++....++ .+.+|||||+||++||||++.+|+++||||||+|||+.++..+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~ 184 (226)
T cd03234 106 AILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184 (226)
T ss_pred HHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 11 111 12334 7888998866654 789999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecCh-HHHHhhCCeEEEEeCCceee
Q psy2681 138 AIKNY---QGGVILVSHDE-RLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~ 173 (211)
.++++ +.|+|++||+. +.+.++||++++|++|+++.
T Consensus 185 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 185 TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 99765 56999999998 68899999999999999864
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-31 Score=220.03 Aligned_cols=175 Identities=16% Similarity=0.195 Sum_probs=140.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
++..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 101 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT--PFP-MSIY 101 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc--cCc-ccHH
Confidence 567788889994443 5999999 9999874 899987532 246999999875 555 7999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . .+.+.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~ 180 (250)
T PRK14262 102 DNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPI 180 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHH
Confidence 887532 111 1 123566788888853 234 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++..+.+.|+++ +.|||++|||++.+..+||++++|++|+++. .|+.+++.
T Consensus 181 ~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14262 181 ATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE-YGPTREIV 233 (250)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 999999999876 4699999999999999999999999999974 56666543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-31 Score=224.75 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=139.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+.+..|..+.+++.-. ++|||++ |+|+.+ |++|+|..++ +..++|++|++. +++. ++
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~--l~~~-tv 136 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN--PFPK-SI 136 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc--cCcC-CH
Confidence 3567788999994443 5999999 999987 6899997532 236999999874 5654 88
Q ss_pred HHHHHhh---cCCC---HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 62 CEYLMKL---FNLP---YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 62 ~e~~~~~---~~~~---~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
.+++... .+.. ..++.++++.+|+.. ..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 137 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~ 215 (285)
T PRK14254 137 YDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLD-SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215 (285)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 8887532 1111 235677899999852 334 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEE-EEeCCceeeecCChHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELW-ALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~-~l~~g~i~~~~g~~~~~ 181 (211)
+..+.+.|+++ +.|||++|||++++..+|++++ +|++|+++. .++..++
T Consensus 216 ~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~-~g~~~~~ 267 (285)
T PRK14254 216 TSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE-FDDTDKI 267 (285)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE-eCCHHHH
Confidence 99999999887 4699999999999999999975 569999865 5665554
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-31 Score=220.94 Aligned_cols=173 Identities=20% Similarity=0.264 Sum_probs=138.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..|..+.+++.-. ++|||++ |+|+.+ |++|+|..++ +..++|+||++. +++. ++.+
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~~-tv~~ 104 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN--PFPK-SIYD 104 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc--cccC-CHHH
Confidence 56678888884443 5999999 999986 4799997532 235999999874 5554 8888
Q ss_pred HHHhh---cCC--C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 64 YLMKL---FNL--P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 64 ~~~~~---~~~--~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
++... .+. . ...+.++++.+|+.+ ..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 105 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~ 183 (251)
T PRK14244 105 NVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183 (251)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 87532 121 1 123567899999864 233 368899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .++.+++
T Consensus 184 ~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 235 (251)
T PRK14244 184 ATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE-YNTTQEI 235 (251)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999864 5665554
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=243.32 Aligned_cols=177 Identities=19% Similarity=0.216 Sum_probs=141.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC---------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP---------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t 60 (211)
.+..|..+.+++--. ++|||++ |+|+++| ++|+|..++ +.++||++|++...+++.++
T Consensus 31 ~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~ 110 (529)
T PRK15134 31 QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT 110 (529)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhh
Confidence 456788899994443 5999999 9999986 799986532 13699999986423556678
Q ss_pred HHHHHHhh----cCCC----HHHHHHHHHhCCCCCc---cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 61 PCEYLMKL----FNLP----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 61 ~~e~~~~~----~~~~----~~~~~~~l~~~gl~~~---~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
+.+++... .+.. ..++.++++.+|+.+. .+ +++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~ 189 (529)
T PRK15134 111 LEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLT-DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189 (529)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHh-hCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCH
Confidence 77766421 1222 2356788999999752 34 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++.++.++|+++ +.|||+||||++++..+||++++|++|+++. .|...++
T Consensus 190 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~~~~ 244 (529)
T PRK15134 190 SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE-QNRAATL 244 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999764 5799999999999999999999999999864 4555544
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=224.76 Aligned_cols=174 Identities=20% Similarity=0.234 Sum_probs=139.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+ |++|+|..++ +..++|++|++. +++ .|+.
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~ 137 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN--PFP-KSIF 137 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC--CCc-cCHH
Confidence 467788889994443 5999999 999864 4999987532 236999999975 565 4999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . .+.+.++++.+|+. +..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~ 216 (286)
T PRK14275 138 DNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD-KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPK 216 (286)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 988632 121 1 12345678888873 3344 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 217 ~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~ 268 (286)
T PRK14275 217 ATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE-HAPTAQL 268 (286)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 3599999999999999999999999999864 5666554
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=222.33 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=131.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|..++ +..++|++|++. +++ .|+
T Consensus 35 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv 110 (269)
T PRK14259 35 DIPRGKVTALI-GPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN--PFP-KSI 110 (269)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc--cch-hhH
Confidence 35678888888 554 5999999 999987 6899997542 235999999874 566 499
Q ss_pred HHHHHhhc---CCC---HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 62 CEYLMKLF---NLP---YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 62 ~e~~~~~~---~~~---~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
.+++.... +.. .+.+.++++.+++. +..+ +++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 111 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~ 189 (269)
T PRK14259 111 YENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLN-ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIS 189 (269)
T ss_pred HHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhC-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 99885321 111 23456678888763 2344 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
+..+.++|+++ +.|||++|||++++..+||++++|++
T Consensus 190 ~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 190 TLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99999999876 46999999999999999999999996
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=220.01 Aligned_cols=174 Identities=20% Similarity=0.243 Sum_probs=138.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCc---ccC--CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGE---LTP--NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~---~~p--~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+ .+| ++|+|..++ +..++|++|++. +++ .|+
T Consensus 25 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 100 (250)
T PRK14245 25 EIEEKSVVAFI-GPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN--PFP-KSI 100 (250)
T ss_pred EEeCCCEEEEE-CCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc--cCc-ccH
Confidence 45678888888 554 5999999 9986 454 589986532 235999999874 555 588
Q ss_pred HHHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. . ...+.++++.+|+.+ ..+ +++.+||||||||++|||||+.+|+++||||||+|||+
T Consensus 101 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 179 (250)
T PRK14245 101 FENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP 179 (250)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 8887532 111 1 134567889999853 233 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+.+++.
T Consensus 180 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~-~~~~~~~~ 233 (250)
T PRK14245 180 ISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE-YDDTKKIF 233 (250)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999876 4699999999999999999999999999864 56666553
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=221.02 Aligned_cols=175 Identities=18% Similarity=0.257 Sum_probs=141.0
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
++.|..+.+++.-. ++|||++ |+|..+|++|+|...+ +..++|++|++. +++..|+.++
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~n 110 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN--PFPHLSIYDN 110 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc--cCCCCcHHHH
Confidence 56788899994443 5999999 9999999987654221 346999999875 6777899988
Q ss_pred HHhhc---CC-CH----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 65 LMKLF---NL-PY----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 65 ~~~~~---~~-~~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+.... +. .. ..+.++++.+++.. ..+ +++..||+|||||++||||++.+|+++||||||+|||+.++
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~ 189 (257)
T PRK14246 111 IAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLN-SPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS 189 (257)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhc-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 75321 11 22 23567889999863 334 37899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 133 DALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 133 ~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
..+.+.|.++ +.|||+|||+++++.++|+++++|++|+++. .|+.+++.
T Consensus 190 ~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~~ 240 (257)
T PRK14246 190 QAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE-WGSSNEIF 240 (257)
T ss_pred HHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999876 3699999999999999999999999999875 46655543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=220.59 Aligned_cols=174 Identities=19% Similarity=0.223 Sum_probs=139.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++ |++|+|..++ +..++|++|++. +++ .|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 102 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT--PFP-FSVY 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc--cCC-CcHH
Confidence 456788888884443 5999999 999987 4799986432 235999999874 554 6999
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . ...+.++++.+++. ...+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~ 181 (251)
T PRK14251 103 DNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLD-RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181 (251)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhc-cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHH
Confidence 987532 121 1 13456788888984 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++|+++++|++|+++. .++.+++
T Consensus 182 ~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 182 SSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 5699999999999999999999999999975 4565544
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=218.79 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=139.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC-----cceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN-----KGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++|+ +|+|..++ +..++|++|++. +++..|+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~ 103 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN--PFPTMSVF 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc--cCcCCCHH
Confidence 466788889994443 5999999 99999874 79986532 236999999875 67778999
Q ss_pred HHHHhh---cCC-CH----HHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-PY----EKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~~----~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. .. +.+.++++.+++. +..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 182 (252)
T PRK14272 104 DNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLK-TPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182 (252)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 988532 121 12 2234456667653 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++||+++++..+||++++|++|+++. .|+.+++
T Consensus 183 ~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 234 (252)
T PRK14272 183 STARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE-HGPTDQL 234 (252)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 3799999999999999999999999999864 5666554
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=222.74 Aligned_cols=175 Identities=23% Similarity=0.274 Sum_probs=142.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCC--------cceEEecC-----------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPN--------KGELRKSP-----------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~--------~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t 60 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|+ +|+|..++ +..++|++|++. +++..|
T Consensus 23 ~i~~Ge~~~l~-G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~--~~~~~t 99 (272)
T PRK13547 23 RIEPGRVTALL-GRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ--PAFAFS 99 (272)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC--CCCCCc
Confidence 45678888888 554 5999999 99999998 89997643 224899999864 345689
Q ss_pred HHHHHHhhc-C-------C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh---------cCCCeEEE
Q psy2681 61 PCEYLMKLF-N-------L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL---------NNPDILIL 120 (211)
Q Consensus 61 ~~e~~~~~~-~-------~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~---------~~p~lllL 120 (211)
+.+++.... . . ..+.+.++++.+|+....++ ++.+|||||||||+|||||+ .+|++|||
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllL 178 (272)
T PRK13547 100 AREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178 (272)
T ss_pred HHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEE
Confidence 999875321 0 0 12345678999999876664 78999999999999999999 59999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 121 DEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 121 DEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
||||+|||+.++..+.++|+++ +.|||+||||++++.++||++++|++|+++. .++.+++.
T Consensus 179 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 243 (272)
T PRK13547 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA-HGAPADVL 243 (272)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-ecCHHHHc
Confidence 9999999999999999999764 5699999999999999999999999999864 56666553
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=214.48 Aligned_cols=176 Identities=24% Similarity=0.350 Sum_probs=145.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
....|+.+++| |-+ ++|||++ |+|+.+|.+|+|.+.+ +..++||||... +|+.+||.||+..
T Consensus 25 ~v~~Geiv~ll-G~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~--iF~~LTVeENL~~ 101 (237)
T COG0410 25 EVERGEIVALL-GRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR--IFPRLTVEENLLL 101 (237)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc--chhhCcHHHHHhh
Confidence 34567888999 554 5999999 9999999999998643 457999999865 8999999999863
Q ss_pred h-cCCC----HH-HHHHHHHhCC-CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 L-FNLP----YE-KSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~-~~~~----~~-~~~~~l~~~g-l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
. +... .. ..+++++.|- |.+..+ ++.+.|||||||.++|||||+.+|++|+|||||.||-|.-.+++.+.|+
T Consensus 102 g~~~~~~~~~~~~~~e~v~~lFP~Lker~~-~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 102 GAYARRDKEAQERDLEEVYELFPRLKERRN-QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180 (237)
T ss_pred hhhcccccccccccHHHHHHHChhHHHHhc-CcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence 2 1111 11 1556777775 334444 4789999999999999999999999999999999999999999999998
Q ss_pred hcC----CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 141 NYQ----GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 141 ~~~----~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++ .||++|.++..++.+++||.++|.+|+++ +.|+.+++..
T Consensus 181 ~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 181 ELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred HHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 763 39999999999999999999999999996 5788877654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=242.21 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=141.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCC-C-----CCCHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLF-P-----DDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~-~-----~~t~~ 62 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|.... +..++|++|++...++ + .+++.
T Consensus 25 ~i~~Ge~~~li-G~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 103 (490)
T PRK10938 25 TLNAGDSWAFV-GANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA 103 (490)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHH
Confidence 45678888888 554 5999999 9999999999997532 1248999998642121 1 35666
Q ss_pred HHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 63 e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
+++.... ...+++.++++.+|+++..++ ++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|+++
T Consensus 104 ~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 104 EIIQDEV-KDPARCEQLAQQFGITALLDR-RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred Hhcccch-hHHHHHHHHHHHcCCHhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 6653211 123457789999999876654 88999999999999999999999999999999999999999999999876
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|||++|||++++.++||++++|++|+++. .|+.+++
T Consensus 182 ~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 222 (490)
T PRK10938 182 HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE-TGEREEI 222 (490)
T ss_pred HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 5699999999999999999999999999864 5666654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=245.52 Aligned_cols=162 Identities=27% Similarity=0.349 Sum_probs=138.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CC-CHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL-PYEKSRR 78 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~-~~~~~~~ 78 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|... ..++|++|++. +++..|+.+++.... .. ......+
T Consensus 362 i~~Geiv~l~-G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~ 436 (590)
T PRK13409 362 IYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIK--PDYDGTVEDLLRSITDDLGSSYYKSE 436 (590)
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEeccccc--CCCCCcHHHHHHHHhhhcChHHHHHH
Confidence 4678888999 554 5999999 999999999999875 47999999865 567889999876421 11 2234678
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChH
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDER 154 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~ 154 (211)
+++.+++.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++
T Consensus 437 ~L~~l~l~~~~~~-~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 437 IIKPLQLERLLDK-NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred HHHHCCCHHHHhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 9999999876654 89999999999999999999999999999999999999999999999875 579999999999
Q ss_pred HHHhhCCeEEEEeCCcee
Q psy2681 155 LIRETDCELWALEKKNIR 172 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i~ 172 (211)
++..+||++++|++ ++.
T Consensus 516 ~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 516 MIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHhCCEEEEEcC-cce
Confidence 99999999999965 554
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=218.37 Aligned_cols=174 Identities=21% Similarity=0.226 Sum_probs=138.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~t~~ 101 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN--PFP-MSIY 101 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc--cCc-ccHH
Confidence 456788888884343 5999999 9998763 689997542 235999999874 565 7898
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . .+.+.++++.+++. ...+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 102 ~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 180 (250)
T PRK14240 102 DNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLK-KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPI 180 (250)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHh-cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 887532 221 1 23456678888874 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++.+..+|+++++|++|+++. .++.+++
T Consensus 181 ~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (250)
T PRK14240 181 STLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE-FGDTVDL 232 (250)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999975 4665554
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=249.17 Aligned_cols=177 Identities=21% Similarity=0.302 Sum_probs=147.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||+| ++|+++|++|+|..++ ++.+||++|++. +| ..|+.+|+...
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~~~ 550 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR--LM-SGSIFENIAGG 550 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCc--cC-cccHHHHHhcC
Confidence 3567899999995554 5999999 9999999999998653 457999999985 54 46899999754
Q ss_pred cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
...+.+++.++++..|+.+.... .....||||||||++||||++++|+++|||||||+||+.+.+.+.+.
T Consensus 551 ~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~ 630 (686)
T TIGR03797 551 APLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES 630 (686)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 33567778888888877643221 12357999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|++.+.|+|+|||+++.+.. +|++++|++|++++ .|+.+++.+
T Consensus 631 L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~-~G~~~~Ll~ 673 (686)
T TIGR03797 631 LERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQ-QGTYDELMA 673 (686)
T ss_pred HHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99988899999999999865 79999999999975 688776543
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=220.14 Aligned_cols=174 Identities=23% Similarity=0.265 Sum_probs=139.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc--C---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT--P---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..|..+.+++.-. ++|||++ |+|+++ | ++|+|..++ +..++|++|++. +++. ++.+
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~~-tv~e 111 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN--PFPQ-SIFD 111 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc--cccc-CHHH
Confidence 56788899994443 5999999 999987 3 589986432 235999999875 5554 8988
Q ss_pred HHHhh---cCC-CH----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 64 YLMKL---FNL-PY----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 64 ~~~~~---~~~-~~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
++... .+. .. .++.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+.+
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 190 (259)
T PRK14274 112 NVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVS 190 (259)
T ss_pred HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 87532 121 21 23556788888853 233 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+..+.+.|.++ +.|||++|||++.+.++||++++|++|+++. .|+.+++.
T Consensus 191 ~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 242 (259)
T PRK14274 191 TRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE-CNDTNKMF 242 (259)
T ss_pred HHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 99999999876 4699999999999999999999999999975 57766653
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=218.14 Aligned_cols=176 Identities=18% Similarity=0.253 Sum_probs=143.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCCHH---
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE--- 74 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~~~--- 74 (211)
++..|.++.+++.-. ++|||++ |+|+++|++|+|..+. .+++++|.+. +.+.+|+.+++... .+....
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g--~~~~~~~~~~--~~~~~tv~enl~~~~~~~~~~~~~~~ 121 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG--EVSVIAISAG--LSGQLTGIENIEFKMLCMGFKRKEIK 121 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC--EEeEEecccC--CCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 566788999994443 5999999 9999999999998765 3567777653 56678898887521 233322
Q ss_pred -HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 75 -KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 75 -~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
.+..+++.+++.+..+. ++.+|||||+||++||+|++.+|++|||||||+|||+.++..+.+.|.++ +.|||++|
T Consensus 122 ~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiis 200 (264)
T PRK13546 122 AMTPKIIEFSELGEFIYQ-PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200 (264)
T ss_pred HHHHHHHHHcCCchhhcC-CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 23457888899876664 78999999999999999999999999999999999999999999998765 57999999
Q ss_pred cChHHHHhhCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 151 HDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
|+++++..+|+++++|++|+++. .|+.+++...
T Consensus 201 H~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~~~~ 233 (264)
T PRK13546 201 HNLGQVRQFCTKIAWIEGGKLKD-YGELDDVLPK 233 (264)
T ss_pred CCHHHHHHHcCEEEEEECCEEEE-eCCHHHHHHH
Confidence 99999999999999999999874 5777665543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=212.58 Aligned_cols=159 Identities=19% Similarity=0.243 Sum_probs=129.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++ .|+.+++....
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~~~l~~~~ 106 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPT--LFS-GTIRSNLDPFD 106 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCc--ccC-ccHHHHhcccC
Confidence 456788888884443 5999999 9999999999998643 346999999974 555 58999885332
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEE
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVI 147 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tii 147 (211)
......+.+.++ + . +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.++|+++ +.|+|
T Consensus 107 ~~~~~~~~~~l~---~----~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii 178 (207)
T cd03369 107 EYSDEEIYGALR---V----S-EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTIL 178 (207)
T ss_pred CCCHHHHHHHhh---c----c-CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 233333444444 2 3 367899999999999999999999999999999999999999999999876 46999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceee
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++||+.+.+.. ||++++|++|++..
T Consensus 179 i~th~~~~~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 179 TIAHRLRTIID-YDKILVMDAGEVKE 203 (207)
T ss_pred EEeCCHHHHhh-CCEEEEEECCEEEe
Confidence 99999999976 89999999999864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=216.82 Aligned_cols=174 Identities=26% Similarity=0.315 Sum_probs=135.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..++ +..++|++|++. +++ .|+.+++....
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~ 101 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV--LFD-GTIAENIRYGK 101 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchh--hhh-hhHHHHhhccC
Confidence 456788889994443 5999999 9999999999997643 235999999874 454 58888875321
Q ss_pred -CCCHHHHHHHHH---------hC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLG---------MF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~---------~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
........+.++ .+ ++.....+ ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~ 180 (238)
T cd03249 102 PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180 (238)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhhccccceeecc-CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 112222222232 22 34333443 678999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++|||++++. .||++++|++|+++. .++.+++.
T Consensus 181 ~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~-~~~~~~~~ 225 (238)
T cd03249 181 ALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVE-QGTHDELM 225 (238)
T ss_pred HHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 99875 469999999999997 799999999999864 56665554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=207.28 Aligned_cols=140 Identities=26% Similarity=0.235 Sum_probs=121.6
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
+..|.++.+++.-. ++|||++ ++|+++|++|+|.......++|++|++. + +..|+.+++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~-~~~tv~~nl~~~------------- 87 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--L-PLGTLREQLIYP------------- 87 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--c-ccccHHHHhhcc-------------
Confidence 45778888884443 5999999 9999999999999887788999999874 3 356888886421
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCC
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 161 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~ 161 (211)
++.+||||||||++||||++.+|+++||||||++||+.++..+.+.+++++.|+|++|||.+.+ ..||
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d 155 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHD 155 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCC
Confidence 2478999999999999999999999999999999999999999999999888999999999876 5899
Q ss_pred eEEEEeCCce
Q psy2681 162 ELWALEKKNI 171 (211)
Q Consensus 162 ~v~~l~~g~i 171 (211)
++++|++++.
T Consensus 156 ~i~~l~~~~~ 165 (166)
T cd03223 156 RVLDLDGEGG 165 (166)
T ss_pred EEEEEcCCCC
Confidence 9999988763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=222.00 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=137.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+++ |++|+|..++ +..++|++|++. +++ .|+.
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 122 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN--PFP-KSIY 122 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc--ccc-ccHH
Confidence 356788899994332 5999999 999987 6999997542 235999999875 555 5999
Q ss_pred HHHHhh---cCCC-H----HHHHHHHHhCCC----CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNLP-Y----EKSRRQLGMFGL----PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~~-~----~~~~~~l~~~gl----~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+.. . ..+.++++.+++ .+..+ +++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 123 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~ 201 (271)
T PRK14238 123 DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLH-DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPI 201 (271)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHh-cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHH
Confidence 987532 1221 1 123455666643 33344 378999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .|+..++
T Consensus 202 ~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~ 253 (271)
T PRK14238 202 STLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE-YDDTDKI 253 (271)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999975 4666554
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=233.81 Aligned_cols=190 Identities=63% Similarity=1.022 Sum_probs=177.5
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
-..-||+|+ |-+ +.|||++ +.|.+.|+.|+.+.+.+.+||++.|+....+....|..+|+...++++.+.+++.|.
T Consensus 611 DmdSRiaIV-GPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG 689 (807)
T KOG0066|consen 611 DMDSRIAIV-GPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLG 689 (807)
T ss_pred cccceeEEE-CCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhh
Confidence 345689999 554 6999999 999999999999999999999999988777888999999999999999999999999
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCC
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 161 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~ 161 (211)
.|||....+.-++..|||||+.||++|-.-+..|++||||||||+||+++...+.+.|+++++.||+||||-.++.+..|
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C 769 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDC 769 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCc
Confidence 99999888877899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCceeeecCChHHHHHHHHHHhhhhhhc
Q psy2681 162 ELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVY 195 (211)
Q Consensus 162 ~v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~ 195 (211)
..||+++.+|-.+.|++++|+.+.++.+.++++.
T Consensus 770 ~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv~vs 803 (807)
T KOG0066|consen 770 NLWVVENQGIDEIDGDFEDYKKEVLDALGEVLVS 803 (807)
T ss_pred eEEEEccCChhhccccHHHHHHHHHHHHHHHhhC
Confidence 9999999999888999999999999999987754
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=217.80 Aligned_cols=174 Identities=22% Similarity=0.328 Sum_probs=138.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCc--ccCCcceEEecC-----------C-eEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGE--LTPNKGELRKSP-----------R-LRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~--~~p~~G~i~~~~-----------~-~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
+++..|..+.+++.-. ++|||++ |+|+ ++|++|+|.... + ..++|++|++. +++..++.+++
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~--~~~~~~~~~~l 105 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPI--EIPGVSNADFL 105 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccc--ccccccHHHHH
Confidence 5677888999994443 5999999 9998 579999997532 1 14788999864 67777888776
Q ss_pred HhhcC----------CC----HHHHHHHHHhCCCCC-ccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 66 MKLFN----------LP----YEKSRRQLGMFGLPS-YAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 66 ~~~~~----------~~----~~~~~~~l~~~gl~~-~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
..... .. ...+.++++.+|+.. ..++ ++. .|||||||||+||||++.+|+++||||||+|||+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 184 (252)
T CHL00131 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR-NVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184 (252)
T ss_pred HHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc-ccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 42210 01 123567899999973 4444 666 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChH
Q psy2681 130 ESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 130 ~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~ 179 (211)
.++..+.+.|+++ +.|||++|||++++... ||++++|++|+++. .|+.+
T Consensus 185 ~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 237 (252)
T CHL00131 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK-TGDAE 237 (252)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE-ecChh
Confidence 9999999999865 57999999999999886 89999999999864 56554
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=216.24 Aligned_cols=175 Identities=19% Similarity=0.266 Sum_probs=134.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcc--cCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGEL--TPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
++..|..+.+++.-. ++|||++ |+|+. +|++|+|..++ +..++|++|++. +++..+..++..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~~~ 100 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV--EIPGVSNQFFLQ 100 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCch--hccchhHHHHHH
Confidence 567788899994443 5999999 99995 69999997543 135999999864 455555444332
Q ss_pred hh------c-C---CC----HHHHHHHHHhCCCCCccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 67 KL------F-N---LP----YEKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 67 ~~------~-~---~~----~~~~~~~l~~~gl~~~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
.. . . .. ...+.++++.+++.+....+++. +|||||||||+||||++.+|+++||||||+|||+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~ 180 (248)
T PRK09580 101 TALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180 (248)
T ss_pred HhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 11 0 0 01 12346788889995322333554 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChHH
Q psy2681 132 IDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 132 ~~~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+..+.+.|+++ +.|||++|||++++... ++++++|++|+++. .|+++.
T Consensus 181 ~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~-~g~~~~ 232 (248)
T PRK09580 181 LKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTL 232 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE-eCCHHH
Confidence 99999988764 57999999999999887 89999999999864 677663
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=217.33 Aligned_cols=173 Identities=20% Similarity=0.238 Sum_probs=138.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-----CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-----NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-----~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 25 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 100 (249)
T PRK14253 25 PIPARQVTALI-GPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN--PFP-MSIY 100 (249)
T ss_pred EecCCCEEEEE-CCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC--cCc-ccHH
Confidence 45678888888 554 5999999 9999986 589887532 235999999875 565 7998
Q ss_pred HHHHhh---cCCC-H----HHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNLP-Y----EKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~~-~----~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+.. . +.+.++++.+++.. ..+ +++.+|||||||||+||||++.+|+++||||||+|||+.
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 179 (249)
T PRK14253 101 ENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPI 179 (249)
T ss_pred HHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhh-cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 887532 1211 1 23456778888743 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.++|+++ +.|||++||+++++..+|+++++|++|+++. .|+.+++
T Consensus 180 ~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 231 (249)
T PRK14253 180 ATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVI 231 (249)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999875 5666554
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=217.50 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=139.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC-----cceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN-----KGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|+ +|+|..+. +..++|++|++. +++ .|+.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv~ 102 (251)
T PRK14249 26 DFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN--PFP-KSIF 102 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc--cCc-CcHH
Confidence 466788888884443 5999999 99999997 59886431 346999999975 555 4888
Q ss_pred HHHHhh---cCCC-----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNLP-----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~~-----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+.. .+.+.++++.+++. +..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (251)
T PRK14249 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181 (251)
T ss_pred HHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 887532 1211 12345567778864 2334 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
++..+.++|+++ +.|||++|||++++.++||++++|++|+++. .++..++
T Consensus 182 ~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14249 182 STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE-YGRTGEI 233 (251)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999865 4666554
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=215.70 Aligned_cols=167 Identities=25% Similarity=0.289 Sum_probs=134.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCCH----
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY---- 73 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~~---- 73 (211)
.+..|..+.+++.-. ++|||++ ++|+++|++|+|..+... +.+.... ..+++..|+.+++... ++...
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~--~~~~~~~tv~enl~~~~~~~~~~~~~~~ 120 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLG--GGFNPELTGRENIYLNGRLLGLSRKEID 120 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhccc--ccCCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 456788888884443 5999999 999999999999876532 2222111 2256678998887532 22222
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
+.+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +.|||++|
T Consensus 121 ~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~s 199 (224)
T cd03220 121 EKIDEIIEFSELGDFIDL-PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVS 199 (224)
T ss_pred HHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 235678899999876664 78999999999999999999999999999999999999999999998765 46999999
Q ss_pred cChHHHHhhCCeEEEEeCCceee
Q psy2681 151 HDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+.+++..+++++++|++|+++.
T Consensus 200 H~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 200 HDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999853
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=218.88 Aligned_cols=173 Identities=21% Similarity=0.216 Sum_probs=139.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+++ |++|+|..++ +..++|+||++. +++ .|+
T Consensus 42 ~i~~Ge~~~I~-G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 117 (267)
T PRK14237 42 QFEKNKITALI-GPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN--PFA-KSI 117 (267)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc--ccc-ccH
Confidence 35678888898 554 5999999 999986 5899986432 335999999864 555 599
Q ss_pred HHHHHhhc---CC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKLF---NL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~~---~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++.... +. . ...+.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+
T Consensus 118 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 118 YENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLH-KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP 196 (267)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99886321 11 1 133556788888842 344 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.++|+++ +.|||++||+++++.++||++++|++|+++. .|+..++
T Consensus 197 ~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14237 197 ISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNI 249 (267)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999876 4699999999999999999999999999975 5666554
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=215.58 Aligned_cols=174 Identities=22% Similarity=0.261 Sum_probs=135.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..+. +..++|++|++. ++ ..|+.+++....
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~ 99 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV--LF-NDTIGYNIRYGR 99 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCCh--hh-cchHHHHHhhcC
Confidence 466788889984443 5999999 9999999999997643 235999999974 55 468998885422
Q ss_pred -CCCHHHHHHHHHhC-----------CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMF-----------GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
......+...++.+ ++...... ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~ 178 (236)
T cd03253 100 PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE-RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178 (236)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 22222333333333 33333333 578999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|.++ +.|||++||+.+++.. |+++++|++|+++. .++.+++.
T Consensus 179 ~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~-~~~~~~~~ 223 (236)
T cd03253 179 ALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVE-RGTHEELL 223 (236)
T ss_pred HHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEe-eCCHHHHh
Confidence 99766 5699999999999975 99999999999864 56665554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=209.52 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=121.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~~ 67 (211)
.++.|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. ..+++..|+.+++..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 567788889994443 5999999 9999999999997542 236999999853 236777888888743
Q ss_pred hcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CC
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QG 144 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ 144 (211)
... ||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.
T Consensus 102 ~~~--------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 155 (182)
T cd03215 102 SSL--------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155 (182)
T ss_pred Hhh--------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 210 9999999999999999999999999999999999999999999865 56
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
|+|++||+++++.++|+++++|++|++
T Consensus 156 tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 156 AVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=238.11 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=136.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHH--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEY-- 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~-- 64 (211)
++..|..+.++ |-+ ++|||++ |+|+.+|++|+|..++ +..++|++|++. ..+++++++.++
T Consensus 270 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 348 (491)
T PRK10982 270 DLHKGEILGIA-GLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSL 348 (491)
T ss_pred EEeCCcEEEEe-cCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhee
Confidence 56778899999 665 5999999 9999999999998653 123899999853 235666766544
Q ss_pred ---HHhh---cCC-C----HHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 65 ---LMKL---FNL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 65 ---~~~~---~~~-~----~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+... ++. . ...+.++++.+++. +..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~ 427 (491)
T PRK10982 349 ISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHR-TQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAK 427 (491)
T ss_pred hhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcc-cccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHH
Confidence 2211 111 1 23456789999995 3444 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 133 DALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 133 ~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
..++++|.++ +.|||++|||++++.++||++++|.+|+++.
T Consensus 428 ~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 428 FEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred HHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 9999988654 6799999999999999999999999999874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=218.38 Aligned_cols=174 Identities=19% Similarity=0.183 Sum_probs=137.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.. |++|+|..+. +..++|++|++. +++ .|+
T Consensus 32 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~~-~tv 107 (264)
T PRK14243 32 DIPKNQITAFI-GPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN--PFP-KSI 107 (264)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc--ccc-ccH
Confidence 35678889999 554 5999999 999876 4799987532 235999999874 555 488
Q ss_pred HHHHHhhc---CCC---HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 62 CEYLMKLF---NLP---YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 62 ~e~~~~~~---~~~---~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
.+++.... ... .+.+..+++.+++.. ..+ +++.+||||||||++||||++.+|++|||||||+|||+.+
T Consensus 108 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 186 (264)
T PRK14243 108 YDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLK-QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIS 186 (264)
T ss_pred HHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 88875321 111 233455677777742 233 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe---------CCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE---------KKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~---------~g~i~~~~g~~~~~~ 182 (211)
+..+.+.|.++ +.|||++||+++++.++||++++|+ +|+++. .|+..++.
T Consensus 187 ~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~~~~~~ 247 (264)
T PRK14243 187 TLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE-FDRTEKIF 247 (264)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE-eCCHHHHH
Confidence 99999999876 3699999999999999999999998 788864 56766653
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=215.84 Aligned_cols=164 Identities=21% Similarity=0.313 Sum_probs=132.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++ .|+.+++....
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~~nl~~~~ 112 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPV--LFA-RSLQDNIAYGL 112 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccH--HHh-hhHHHHhcccc
Confidence 456788888884443 5999999 9999999999997643 246999999874 554 58888875321
Q ss_pred C-CCHH---------HHHHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 N-LPYE---------KSRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ~-~~~~---------~~~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .... .+.++++.+ |+...... ++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 191 (226)
T cd03248 113 QSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191 (226)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 1111 124567777 78766654 689999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
.|+++ +.|||++|||++++.. ||++++|++|++
T Consensus 192 ~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 192 ALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 99876 3699999999999965 999999998863
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=216.00 Aligned_cols=173 Identities=22% Similarity=0.256 Sum_probs=136.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc--C---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT--P---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.++.|..+.+++.-. ++|||++ |+|+.+ | ++|+|..++ +..++|++|++. +++ .|+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~ 103 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN--PFP-FSIY 103 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc--cCC-CcHH
Confidence 456788899994443 5999999 999865 5 589986432 236999999875 565 6888
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . ...+.+.++.+++. +..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 104 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~ 182 (252)
T PRK14255 104 ENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLH-ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182 (252)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 887532 121 1 12345567777763 2333 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
++..+.+.|+++ +.|||++|||++++.++|+++++|++|+++.+ ++..+
T Consensus 183 ~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~ 233 (252)
T PRK14255 183 SSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF-ADTKQ 233 (252)
T ss_pred HHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 999999999876 46999999999999999999999999999753 54433
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=217.18 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=141.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.++.|..+.+++.-. ++|||++ |+|+++| ++|+|..+. +..++|++|++. ++ ..|+.
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--~~-~~tv~ 106 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN--PF-SMSIF 106 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc--cc-cccHH
Confidence 467888999994443 5999999 9999986 799986532 235999999975 45 58999
Q ss_pred HHHHhhc---CC---CHHHHHHHHHhCCCCCcc---ccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 63 EYLMKLF---NL---PYEKSRRQLGMFGLPSYA---HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 63 e~~~~~~---~~---~~~~~~~~l~~~gl~~~~---~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
+++.... .. ....+.++++.+++.... ..+++.+|||||+||++||||++.+|+++||||||+|||+.++.
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~ 186 (261)
T PRK14263 107 DNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATR 186 (261)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 9885321 11 123567789999985321 12367899999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe--------CCceeeecCChHHHH
Q psy2681 134 ALAEAIKNY--QGGVILVSHDERLIRETDCELWALE--------KKNIRKFNGDFDDYR 182 (211)
Q Consensus 134 ~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~--------~g~i~~~~g~~~~~~ 182 (211)
.+.+.|+++ +.|||++||+++++.++||++++|+ +|+++. .|+.+++.
T Consensus 187 ~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~~~~~ 244 (261)
T PRK14263 187 RVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE-MGPTAQIF 244 (261)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE-eCCHHHHH
Confidence 999999876 4699999999999999999999996 788865 56766553
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=218.55 Aligned_cols=174 Identities=20% Similarity=0.177 Sum_probs=137.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.++.|..+.+++.-. ++|||++ |+|+.+| ++|+|..++ +..++|+||++. +++ .++.
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~ 118 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN--PFP-KSIY 118 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc--ccc-ccHH
Confidence 467788999994443 5999999 9999863 589987532 246999999875 555 4888
Q ss_pred HHHHhhc---CC---CHHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q psy2681 63 EYLMKLF---NL---PYEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132 (211)
Q Consensus 63 e~~~~~~---~~---~~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~ 132 (211)
+++.... .. ..+.+.++++.+++. +..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 119 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~ 197 (274)
T PRK14265 119 ENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK-EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197 (274)
T ss_pred HHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhc-CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 8875321 11 122345677888763 2333 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe---------CCceeeecCChHHH
Q psy2681 133 DALAEAIKNY--QGGVILVSHDERLIRETDCELWALE---------KKNIRKFNGDFDDY 181 (211)
Q Consensus 133 ~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~---------~g~i~~~~g~~~~~ 181 (211)
..+.++|+++ +.|||++|||++++.++||++++|+ +|+++. .|+..++
T Consensus 198 ~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g~~~~~ 256 (274)
T PRK14265 198 RQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FSPTEQM 256 (274)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eCCHHHH
Confidence 9999999876 4699999999999999999999997 788864 5776654
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=242.19 Aligned_cols=176 Identities=22% Similarity=0.252 Sum_probs=145.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +.+++|++|++. +|+ .|+.+|+...
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~--lF~-~Ti~~NI~~~ 438 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPV--VLA-DTFLANVTLG 438 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCc--ccc-chHHHHHHhC
Confidence 3567899999994443 6999999 9999999999998653 457999999985 555 4899998755
Q ss_pred cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
...+++++.++++.+|+.+...+ .....||||||||++||||++.+|+++||||||++||+.+.+.+.+.
T Consensus 439 ~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~ 518 (592)
T PRK10790 439 RDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA 518 (592)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 45566777788887776532211 12357999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ ++|+|+|||+++.+.. +|++++|++|+++. .|+.+++.
T Consensus 519 l~~~~~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~-~G~~~~L~ 562 (592)
T PRK10790 519 LAAVREHTTLVVIAHRLSTIVE-ADTILVLHRGQAVE-QGTHQQLL 562 (592)
T ss_pred HHHHhCCCEEEEEecchHHHHh-CCEEEEEECCEEEE-EcCHHHHH
Confidence 9876 5799999999988875 79999999999975 67877654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=262.29 Aligned_cols=177 Identities=20% Similarity=0.224 Sum_probs=149.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.++ |.+ ++|||++ |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+++...
T Consensus 952 ~I~~Gei~aLL-G~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~--L~~~LTV~E~L~f~~ 1028 (2272)
T TIGR01257 952 TFYENQITAFL-GHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNI--LFHHLTVAEHILFYA 1028 (2272)
T ss_pred EEcCCcEEEEE-CCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCc--CCCCCCHHHHHHHHH
Confidence 34566777788 665 5999999 9999999999997643 346999999875 78899999988532
Q ss_pred --cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+.. .+++.++++.+||.+..++ ++++|||||||||+||+||+.+|+++||||||+|||+.+++.++++|++.
T Consensus 1029 ~lkg~~~~~~~~~v~~lL~~vgL~~~~~~-~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1029 QLKGRSWEEAQLEMEAMLEDTGLHHKRNE-EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 2322 2346789999999887765 78999999999999999999999999999999999999999999999876
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+.|||++|||++++..+|||+++|++|+++. .|+...++++
T Consensus 1108 ~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~-~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1108 RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC-SGTPLFLKNC 1150 (2272)
T ss_pred hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHHHh
Confidence 5699999999999999999999999999864 6777766543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=206.34 Aligned_cols=162 Identities=28% Similarity=0.400 Sum_probs=138.8
Q ss_pred Ccccccc-ccCcccCCcceEEec-----------------CCeEEEEEeCCCCCCCCCCCCHHHHHHhh----cCCCH--
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKS-----------------PRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY-- 73 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~-----------------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~----~~~~~-- 73 (211)
++|||++ +.=+..|.+|+.... .++.+|++||... ++|.+||.+|+... .+.++
T Consensus 40 gkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~--lwphltv~enlieap~kv~gl~~~q 117 (242)
T COG4161 40 GKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN--LWPHLTVQENLIEAPCRVLGLSKDQ 117 (242)
T ss_pred chHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc--cCchhHHHHHHHhhhHHHhCCCHHH
Confidence 5899999 888889999998642 1457999999864 89999999998532 23433
Q ss_pred --HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 74 --EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 74 --~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
.++.++|+++.+.++.++ .+-.|||||+|||+|||||+.+|++|++||||++|||+-..++.++|+++ |.|-++
T Consensus 118 a~~~a~ellkrlrl~~~adr-~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvi 196 (242)
T COG4161 118 ALARAEKLLKRLRLKPYADR-YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVI 196 (242)
T ss_pred HHHHHHHHHHHhcccccccc-CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEE
Confidence 345689999999998886 77899999999999999999999999999999999999999999999887 569999
Q ss_pred EecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 149 VSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 149 vsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|||..+.+.+.+.+++.|++|++++ .|+.+-+.+
T Consensus 197 vthev~va~k~as~vvyme~g~ive-~g~a~~ft~ 230 (242)
T COG4161 197 VTHEVEVARKTASRVVYMENGHIVE-QGDASCFTE 230 (242)
T ss_pred EEeehhHHHhhhhheEeeecCeeEe-ecchhhccC
Confidence 9999999999999999999999986 577665543
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=208.67 Aligned_cols=161 Identities=22% Similarity=0.249 Sum_probs=127.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
++..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +++|++|++. ++ ..|+.+++............+.+
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~--l~-~~t~~enl~~~~~~~~~~~~~~~ 101 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPW--IQ-NGTIRENILFGKPFDEERYEKVI 101 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCch--hc-cCcHHHHhccCCCcCHHHHHHHH
Confidence 567788888884443 5999999 9999999999998876 7999999975 45 56999988643222233333334
Q ss_pred HhCCC-----------CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HHHhc---CCe
Q psy2681 81 GMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKNY---QGG 145 (211)
Q Consensus 81 ~~~gl-----------~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~---~~t 145 (211)
+.+++ +..... ++.+||+|||||++||||++.+|+++||||||++||+.+++.+.+ ++.+. +.|
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~-~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~t 180 (204)
T cd03250 102 KACALEPDLEILPDGDLTEIGE-KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180 (204)
T ss_pred HHcCcHHHHHhccCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCE
Confidence 44333 223333 578999999999999999999999999999999999999999987 45433 469
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 146 VILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
||++||+++.+.. ++++++|++|+
T Consensus 181 vi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 181 RILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred EEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 9999999999987 99999999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=246.04 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=145.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ ++.+||++|++. +| +.|+.+|+...
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTi~eNi~l~ 576 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIF--LF-EGTVRDNLTLW 576 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCCh--hh-hccHHHHhhCC
Confidence 4577899999995553 5999999 9999999999998653 567999999975 44 56999999643
Q ss_pred c-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ..+.+++.++++..++.+...+ .....||||||||++||||++++|+++|||||||+||+.+...+.+
T Consensus 577 ~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~ 656 (710)
T TIGR03796 577 DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD 656 (710)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHH
Confidence 2 3456677777777666432211 1346799999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|++.+.|+|+|||+++.+.. +|++++|++|+++. .|+.+++.+
T Consensus 657 ~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~-~G~~~~Ll~ 700 (710)
T TIGR03796 657 NLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQ-RGTHEELWA 700 (710)
T ss_pred HHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEEE-ecCHHHHHH
Confidence 999888899999999999865 89999999999975 688776643
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=219.11 Aligned_cols=174 Identities=21% Similarity=0.281 Sum_probs=140.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-----CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-----NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-----~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|..+.++ |-+ ++|||++ |+|+++| ++|+|..+. +..++|++|++. +++ .|+.
T Consensus 43 ~i~~Ge~~~I~-G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~ 118 (276)
T PRK14271 43 GFPARAVTSLM-GPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN--PFP-MSIM 118 (276)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc--cCC-ccHH
Confidence 45677888888 554 5999999 9999985 699987532 236999999875 566 7999
Q ss_pred HHHHhh---cC-CCHH----HHHHHHHhCCCCCc----cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FN-LPYE----KSRRQLGMFGLPSY----AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~-~~~~----~~~~~l~~~gl~~~----~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .. .... .+.++++.+++... .+ +.+.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 119 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~ 197 (276)
T PRK14271 119 DNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPT 197 (276)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 887532 11 1222 24567888998642 33 468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++|+++. .++..++.
T Consensus 198 ~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 250 (276)
T PRK14271 198 TTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLF 250 (276)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999876 4699999999999999999999999999875 56666554
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=262.72 Aligned_cols=176 Identities=22% Similarity=0.261 Sum_probs=148.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.|++..
T Consensus 1962 I~~GEi~gLL-G~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~--L~~~LTv~E~L~l~a~ 2038 (2272)
T TIGR01257 1962 VRPGECFGLL-GVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDA--IDDLLTGREHLYLYAR 2038 (2272)
T ss_pred EcCCcEEEEE-CCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEecccc--CCCCCCHHHHHHHHHH
Confidence 4567778888 665 5999999 9999999999998643 246999999865 7888999998753
Q ss_pred hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.++.+. +.+.++++.+||.+..++ ++++|||||||||+||+||+.+|+++||||||+|||+.+++.+++.|++.
T Consensus 2039 l~g~~~~~~~~~v~~lLe~lgL~~~~dk-~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257 2039 LRGVPAEEIEKVANWSIQSLGLSLYADR-LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 233332 235678999999877764 88999999999999999999999999999999999999999999999765
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+.|||++||++++++.+||++++|.+|+++. .|+..+++++
T Consensus 2118 ~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~-~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2118 REGRAVVLTSHSMEECEALCTRLAIMVKGAFQC-LGTIQHLKSK 2160 (2272)
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHHH
Confidence 5699999999999999999999999999864 6777766543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=244.60 Aligned_cols=174 Identities=22% Similarity=0.272 Sum_probs=142.9
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+..|.++.+++.-. ++|||+| ++|+++|..|+|..++ |++||||+|++. ...-|+.||+....
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~---Lf~gSI~eNi~l~~p 572 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF---LFSGSIRENIALGNP 572 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch---hhcCcHHHHHhcCCC
Confidence 46789999996665 5999999 9999999999998653 678999999974 45568999987543
Q ss_pred CCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
..+.+++.+++...|..+ .... .-..||||||||++||||++++|++||||||||+||+.+.+.+.+.
T Consensus 573 ~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~ 651 (709)
T COG2274 573 EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651 (709)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH
Confidence 334455655555554432 2222 3567999999999999999999999999999999999999999999
Q ss_pred HHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.++. .|+|+|||....+. .||++++|++|++++ .|+.+++..
T Consensus 652 L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~-~gs~~ell~ 696 (709)
T COG2274 652 LLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVE-QGSHEELLA 696 (709)
T ss_pred HHHHhcCCeEEEEEccchHhh-hccEEEEccCCceec-cCCHHHHHH
Confidence 99884 79999999999986 569999999999975 788877654
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=217.07 Aligned_cols=173 Identities=24% Similarity=0.265 Sum_probs=139.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+ |++|+|..++ +..++|++|++. +++. |+
T Consensus 47 ~i~~Ge~~~I~-G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~~-tv 122 (272)
T PRK14236 47 RIPKNRVTAFI-GPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN--PFPK-SI 122 (272)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc--cCcc-cH
Confidence 45678888888 554 5999999 999987 4899987432 346999999874 5664 89
Q ss_pred HHHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+. . .+.+.++++.+++.. ..+ +++.+||||||||++||||++.+|+++||||||+|||+
T Consensus 123 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~ 201 (272)
T PRK14236 123 YENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLH-ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201 (272)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 8887532 221 1 133567788888853 333 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++||+++++.++|+++++|++|+++. .|+..++
T Consensus 202 ~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 254 (272)
T PRK14236 202 ISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE-YGDTDTL 254 (272)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe-cCCHHHH
Confidence 9999999999876 4699999999999999999999999999864 5666554
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=205.57 Aligned_cols=137 Identities=31% Similarity=0.386 Sum_probs=119.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.+..|..+.+++.-. ++|||++ ++|..+|++|+|..+. +..++|++|++. +++..++.+++.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~~~---- 95 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS--LYENLTVRENLK---- 95 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCc--cccCCcHHHHhh----
Confidence 456788888884443 5999999 9999999999997543 246899999875 677788887762
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|+|
T Consensus 96 --------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 149 (173)
T cd03230 96 --------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149 (173)
T ss_pred --------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999999999999999999999875 46999
Q ss_pred EEecChHHHHhhCCeEEEEeCCce
Q psy2681 148 LVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
++|||.+++..+|+++++|++|++
T Consensus 150 i~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 150 LSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999998863
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=215.89 Aligned_cols=175 Identities=18% Similarity=0.193 Sum_probs=139.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC-----cceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN-----KGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~-----~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
++..|..+.+++.-. ++|||++ ++|+.+|+ +|+|..+. +..++|++|++. +++ .|+.
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--l~~-~tv~ 105 (261)
T PRK14258 29 EIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN--LFP-MSVY 105 (261)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc--cCc-ccHH
Confidence 456788889994443 5999999 99999985 78775421 235999999864 566 7998
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . ...+.++++.+++.+ ..+ +++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~ 184 (261)
T PRK14258 106 DNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIH-KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184 (261)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 887532 121 1 123567888998743 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeC-----CceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK-----KNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~-----g~i~~~~g~~~~~~ 182 (211)
++..+.+.|+++ +.|||++|||++++.++||++++|++ |+++. .++.+++.
T Consensus 185 ~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~~ 244 (261)
T PRK14258 185 ASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE-FGLTKKIF 244 (261)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE-eCCHHHHH
Confidence 999999998763 57999999999999999999999999 88864 57766653
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=208.81 Aligned_cols=153 Identities=25% Similarity=0.345 Sum_probs=131.5
Q ss_pred Ccccccc-ccCcccCCcceEEecCC------eEEEEEeCCCCCCCCCCCCHHHHHHh---hcCCCH----HHHHHHHHhC
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMF 83 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~~~------~~ig~v~q~~~~~l~~~~t~~e~~~~---~~~~~~----~~~~~~l~~~ 83 (211)
++|||++ ++|+++|+.|+|..+.+ ..-|.|||++. +.|++|+.+|+.. ..+..+ +.+.+.+..+
T Consensus 43 GKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~V 120 (259)
T COG4525 43 GKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120 (259)
T ss_pred cHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4899999 99999999999987653 35799999976 8999999999864 234432 3467889999
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChHHHHhh
Q psy2681 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRET 159 (211)
Q Consensus 84 gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~ 159 (211)
||.+..++ ++.+|||||||||.|||||+.+|++|+||||+++||.-+++.+.++|.+ .++.+++||||++++.-+
T Consensus 121 gL~~~~~~-~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 121 GLEGAEHK-YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL 199 (259)
T ss_pred Cccccccc-ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence 99987764 8999999999999999999999999999999999999999998888754 377999999999999999
Q ss_pred CCeEEEEeC--Cceee
Q psy2681 160 DCELWALEK--KNIRK 173 (211)
Q Consensus 160 ~~~v~~l~~--g~i~~ 173 (211)
++++++|.. |+++.
T Consensus 200 atrLvvlsp~pgRvv~ 215 (259)
T COG4525 200 ATRLVVLSPGPGRVVE 215 (259)
T ss_pred hheeEEecCCCceeeE
Confidence 999999985 45543
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=239.88 Aligned_cols=175 Identities=23% Similarity=0.293 Sum_probs=142.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ +.|++ |++|+|..++ ++.|+|++|++. +| +.|+.+|+...
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--LF-~~TI~eNI~~g 446 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQ--LP-HGTLRDNVLLG 446 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCc--CC-CcCHHHHhhcC
Confidence 3467889999995443 6999999 99999 9999998654 457999999985 55 46999998754
Q ss_pred -cCCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
.+.+++++.++++..++.+ .... ....||||||||++||||++.+|+++|||||||+||+++.+.+.
T Consensus 447 ~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~ 525 (588)
T PRK11174 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 2356677777666665532 2222 34579999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.+. ++|+|+|||+++.+.. +|++++|++|++++ .|+.+++.+
T Consensus 526 ~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e-~G~~~eL~~ 572 (588)
T PRK11174 526 QALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQ-QGDYAELSQ 572 (588)
T ss_pred HHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEee-cCCHHHHHh
Confidence 999876 5799999999998865 79999999999975 688777653
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=215.46 Aligned_cols=173 Identities=21% Similarity=0.194 Sum_probs=138.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-----CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-----NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-----~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+| ++|+|..+. +..++|++|++. +++ .|+
T Consensus 29 ~i~~Ge~~~l~-G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv 104 (259)
T PRK14260 29 DIYRNKVTAII-GPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN--PFP-MSI 104 (259)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc--cCC-ccH
Confidence 34567888888 554 5999999 9999885 489887542 235999999875 565 899
Q ss_pred HHHHHhh---cC-CC----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 62 CEYLMKL---FN-LP----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 62 ~e~~~~~---~~-~~----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
.+++... .+ .. .+.+.++++.+++. +..+ +++.+||||||||++||||++.+|+++||||||+|||+
T Consensus 105 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 183 (259)
T PRK14260 105 YENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLN-KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP 183 (259)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 9987532 11 12 12356778888874 2344 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe-----CCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE-----KKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~-----~g~i~~~~g~~~~~ 181 (211)
.++..+.+.|+++ +.|||++||+++++.++||++++|+ +|+++. .|+..++
T Consensus 184 ~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~ 241 (259)
T PRK14260 184 IATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQI 241 (259)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCHHHH
Confidence 9999999999876 4699999999999999999999997 488864 5676654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=210.70 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=127.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.++.|..+.+++.-. ++|||++ |+|+++|++|+|.... +..++|++|++. ++ +.|+.+++
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~-~~t~~~nl 99 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW--LL-NATVEENI 99 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc--cc-cccHHHHH
Confidence 467788889994443 5999999 9999999999997532 245999999874 45 57888888
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCc-----------cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 66 MKLFNLPYEKSRRQLGMFGLPSY-----------AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
............++++.+++.+. .. .++..|||||||||+||||++.+|+++||||||++||+.++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 178 (218)
T cd03290 100 TFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178 (218)
T ss_pred hhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHH
Confidence 64322233344556666665321 22 3678999999999999999999999999999999999999998
Q ss_pred HHH--HHHh---cCCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 135 LAE--AIKN---YQGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 135 l~~--~l~~---~~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+.+ +++. .+.|+|++||+.+.+. .||++++|++|.
T Consensus 179 l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 179 LMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 887 4443 3579999999999985 689999998873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=209.90 Aligned_cols=159 Identities=27% Similarity=0.300 Sum_probs=131.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---cC
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN 70 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~ 70 (211)
+..|..+.+++.-. ++|||++ |+|+.+|++|+|..++ +..++|++|.+. +++..|+.+++... .+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~tv~~~l~~~~~~~~ 102 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNA--MKPALTVAENLEFWAAFLG 102 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCc--CCCCCcHHHHHHHHHHhcC
Confidence 45678888884443 5999999 9999999999997653 235899998754 56778999987532 22
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
.....+.++++.+|+....+ +++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|||
T Consensus 103 ~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 181 (207)
T PRK13539 103 GEELDIAAALEAVGLAPLAH-LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVI 181 (207)
T ss_pred CcHHHHHHHHHHcCCHHHHc-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 33456788999999986554 488999999999999999999999999999999999999999999999865 57999
Q ss_pred EEecChHHHHhhCCeEEEEe
Q psy2681 148 LVSHDERLIRETDCELWALE 167 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~ 167 (211)
++||+.+++.. ++++.+.
T Consensus 182 i~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 182 AATHIPLGLPG--ARELDLG 199 (207)
T ss_pred EEeCCchhhcc--CcEEeec
Confidence 99999999986 7877664
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=214.67 Aligned_cols=173 Identities=23% Similarity=0.263 Sum_probs=138.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-----CcceEEecC---------------CeEEEEEeCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-----NKGELRKSP---------------RLRIGKFDQHSGEHLFPDD 59 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~ 59 (211)
.+..|..+.++ |-+ ++|||++ |+|+.+| ++|+|..++ +..++|++|++. +++.
T Consensus 38 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~- 113 (265)
T PRK14252 38 MVHEKQVTALI-GPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN--PFPK- 113 (265)
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc--CCcc-
Confidence 45678888898 554 5999999 9999875 789987531 235899999875 5664
Q ss_pred CHHHHHHhh---cCCC-----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 60 TPCEYLMKL---FNLP-----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 60 t~~e~~~~~---~~~~-----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
|+.+++... .+.. .+.+.++++.+++. +..+ +++.+|||||+||++||||++.+|+++||||||+||
T Consensus 114 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gL 192 (265)
T PRK14252 114 SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLG-DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSAL 192 (265)
T ss_pred hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 888887532 1211 23456677788764 2333 478999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 128 DIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 128 D~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+.++..+.+.|+++ +.|||+|||+++++.++|+++++|++|+++. .|+.+++
T Consensus 193 D~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 247 (265)
T PRK14252 193 DPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE-FGATDTI 247 (265)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999876 3699999999999999999999999999975 4665554
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=204.89 Aligned_cols=134 Identities=28% Similarity=0.443 Sum_probs=114.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++.-. ++|||++ |+|+.+|++|+|..+. +..++|++|++. +++ .|+.+++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~l---- 96 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDE--LFS-GSIAENI---- 96 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCc--ccc-CcHHHHC----
Confidence 456678888884443 5999999 9999999999997643 346899999874 555 4777664
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeE
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGV 146 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~ti 146 (211)
||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.||
T Consensus 97 ---------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 149 (173)
T cd03246 97 ---------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149 (173)
T ss_pred ---------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999999999999999999999999765 4699
Q ss_pred EEEecChHHHHhhCCeEEEEeCCce
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
|++|||++++. .|+++++|++|++
T Consensus 150 i~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 150 IVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred EEEeCCHHHHH-hCCEEEEEECCCC
Confidence 99999999985 7999999999864
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=218.91 Aligned_cols=176 Identities=20% Similarity=0.210 Sum_probs=139.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~ 61 (211)
+.+..|..+.+++.-. ++|||++ |+|+++ |++|+|..++ +..++|++|++. +++ .|+
T Consensus 66 ~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv 142 (305)
T PRK14264 66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN--PFP-KSI 142 (305)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc--ccc-ccH
Confidence 3567788888984443 5999999 999986 6899997542 236999999874 555 589
Q ss_pred HHHHHhhc---------------CCC-----HHHHHHHHHhCCCC----CccccCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy2681 62 CEYLMKLF---------------NLP-----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTLNNPDI 117 (211)
Q Consensus 62 ~e~~~~~~---------------~~~-----~~~~~~~l~~~gl~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~l 117 (211)
.+++.... ... .+.+.++++.+++. +..+ +++.+|||||||||+|||||+.+|++
T Consensus 143 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~l 221 (305)
T PRK14264 143 RENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD-DNALGLSGGQQQRLCIARCLAVDPEV 221 (305)
T ss_pred HHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc-CccccCCHHHHHHHHHHHHHhcCCCE
Confidence 98876321 010 23356778888874 2334 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeE-EEEeCCceeeecCChHHHH
Q psy2681 118 LILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCEL-WALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 118 llLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v-~~l~~g~i~~~~g~~~~~~ 182 (211)
|||||||+|||+.++..+.++|+++ +.|||++|||++++..+|+++ ++|++|+++. .|+.+++.
T Consensus 222 LLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~-~g~~~~~~ 288 (305)
T PRK14264 222 ILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE-YDDTDKIF 288 (305)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE-eCCHHHHH
Confidence 9999999999999999999999876 469999999999999999997 5679999875 56766553
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=231.52 Aligned_cols=173 Identities=25% Similarity=0.349 Sum_probs=143.2
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|.++.++ |-. ++|||++ ++|+.+|++|+|+.++ +++++|++|+|. + ..-|+.||+....
T Consensus 344 ~~~g~~talv-G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~--l-f~gTireNi~l~~ 419 (559)
T COG4988 344 IKAGQLTALV-GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY--L-FAGTIRENILLAR 419 (559)
T ss_pred ecCCcEEEEE-CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCc--c-ccccHHHHhhccC
Confidence 4567888898 553 5999999 9999999999998763 467999999985 4 4468899986443
Q ss_pred -CCCHHHHHHHHHhCCCCCcccc-----CCC----CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHT-----IPI----RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~-----~~~----~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
+.+++.+.+++++.|+.+...+ ..+ ..|||||+|||++||||+.+++++|+||||+|||.++...+.+.|
T Consensus 420 ~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l 499 (559)
T COG4988 420 PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499 (559)
T ss_pred CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHH
Confidence 3567788888888877653331 123 449999999999999999999999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+. ++|+|++||++..+.. +|+|++|++|+++. .|+.+++.
T Consensus 500 ~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~-~g~~~~L~ 542 (559)
T COG4988 500 QELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVE-QGTHEELS 542 (559)
T ss_pred HHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceec-cCCHHHHh
Confidence 876 5799999999999976 59999999999975 67777653
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=213.79 Aligned_cols=174 Identities=16% Similarity=0.132 Sum_probs=135.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..+. +..++|++|++. +++ .|+.+++....
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~ 119 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPI--LFS-GSIRFNLDPEC 119 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCc--ccc-cHHHHhcCcCC
Confidence 456788888994443 5999999 9999999999997542 346999999874 554 47777764221
Q ss_pred CCCHHHHHH---------HHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRR---------QLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~---------~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
......+.+ .++.+ |++..... ++.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 198 (257)
T cd03288 120 KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV 198 (257)
T ss_pred CCCHHHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 112222333 33333 45444443 5789999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.++ +.|||++||+++.+.. |+++++|++|+++. .|+.+++.
T Consensus 199 l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~-~g~~~~~~ 242 (257)
T cd03288 199 VMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE-CDTPENLL 242 (257)
T ss_pred HHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE-eCCHHHHH
Confidence 9875 5799999999999986 99999999999874 57766654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=213.02 Aligned_cols=174 Identities=18% Similarity=0.187 Sum_probs=137.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc--C---CcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT--P---NKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p---~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..|..+.+++.-. ++|||++ |+|+.. | ++|+|..++ +..++|++|++. +++ .|+.+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~e 105 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN--PFP-KSIYE 105 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc--cCc-ccHHH
Confidence 55677888884443 5999999 999875 3 489886432 235999999875 565 49999
Q ss_pred HHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 64 YLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 64 ~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
++... .+. . ...+.++++.+++.+ ..+ +++.+||||||||++||||++.+|+++||||||+|||+.+
T Consensus 106 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~ 184 (253)
T PRK14261 106 NVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLH-DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIA 184 (253)
T ss_pred HHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 87532 111 1 123556788888742 234 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+..+.+.|+++ +.|||++||+++++.++||++++|++|+++. .|+..++.
T Consensus 185 ~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14261 185 TAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE-FDKTTQIF 236 (253)
T ss_pred HHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE-cCCHHHHH
Confidence 99999999876 4699999999999999999999999999864 56665543
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=209.37 Aligned_cols=150 Identities=27% Similarity=0.386 Sum_probs=122.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+++.|..+.++ |-+ ++|||++ |+|+++|++|+|..+. +..++|++|++...++ ..|+.+++.
T Consensus 14 ~i~~Ge~~~i~-G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~ 91 (190)
T TIGR01166 14 AAERGEVLALL-GANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVA 91 (190)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHH
Confidence 56788889888 554 5999999 9999999999997532 2358999998632234 468888875
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+... +.+.++++.+|+.+..++ ++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 170 (190)
T TIGR01166 92 FGPLNLGLSEAEVERRVREALTAVGASGLRER-PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170 (190)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 32 22222 345678999999876664 78999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHH
Q psy2681 140 KNY---QGGVILVSHDERL 155 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~ 155 (211)
+++ +.|||++|||+++
T Consensus 171 ~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 171 RRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHcCCEEEEEeecccc
Confidence 875 5699999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=220.67 Aligned_cols=174 Identities=20% Similarity=0.205 Sum_probs=140.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEec-------------CCeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKS-------------PRLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~-------------~~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
.+..|.++.+++.-. ++|||++ |+|+.. |++|+|..+ .+..++|+||++. ++ ..|+.
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~--~~-~~ti~ 180 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT--PF-EMSIF 180 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc--cC-CCcHH
Confidence 466788999994443 5999999 999986 579998642 1346999999975 44 47999
Q ss_pred HHHHhhc---CCCHH-----HHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKLF---NLPYE-----KSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~~---~~~~~-----~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+|+.... +.... .+.++++.+++.+ ... +++.+||||||||++||||++.+|++|||||||++||+.
T Consensus 181 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~ 259 (329)
T PRK14257 181 DNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259 (329)
T ss_pred HHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 9986321 12221 2456788888742 334 378999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+...+.+.|+++ +.|||+|||+++.+.++||++++|++|++++ .|++.++
T Consensus 260 ~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e-~g~~~~l 311 (329)
T PRK14257 260 ATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE-AGETKTI 311 (329)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999876 4699999999999999999999999999976 5777665
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=207.73 Aligned_cols=151 Identities=28% Similarity=0.404 Sum_probs=118.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+.. .+ .+ ..+. .....+.. +.+++
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~-~~---~~-----~~~~-~~~~~i~~--------~~q~l 82 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK-DL---AS-----LSPK-ELARKIAY--------VPQAL 82 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-EC---Cc-----CCHH-HHHHHHhH--------HHHHH
Confidence 355678888884443 5999999 99999999999987542 11 00 0000 00111110 11288
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
+.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +.|+|++||+++++
T Consensus 83 ~~~gl~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 83 ELLGLAHLADR-PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHcCCHhHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 88999876654 78999999999999999999999999999999999999999999999765 46999999999999
Q ss_pred HhhCCeEEEEeCCcee
Q psy2681 157 RETDCELWALEKKNIR 172 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~ 172 (211)
.++||++++|++|+++
T Consensus 162 ~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 162 ARYADRVILLKDGRIV 177 (180)
T ss_pred HHhCCEEEEEECCEEE
Confidence 9999999999999875
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=220.58 Aligned_cols=175 Identities=19% Similarity=0.259 Sum_probs=145.0
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
++.|.-+.+++-=. ++|||=. +.+++++. |+|...+ +.++-.|||+|+-++.|.+|+.+.+..
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~E 388 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEE 388 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhh
Confidence 35566677773333 5899988 89998776 8887432 457899999998889999999887753
Q ss_pred h---c--CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 68 L---F--NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 68 ~---~--~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
. . ..+ .+++.++|+.+||+....++++.++|||||||++||||++.+|++++||||||+||...+.++.++
T Consensus 389 GL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L 468 (534)
T COG4172 389 GLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL 468 (534)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH
Confidence 2 1 122 345778999999987666678999999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
|+++ +.+.++||||+..+..+|++++||++|++++ .|+.++
T Consensus 469 Lr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE-~G~~~~ 513 (534)
T COG4172 469 LRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE-QGPTEA 513 (534)
T ss_pred HHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEee-eCCHHH
Confidence 9865 5699999999999999999999999999986 465544
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=228.88 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=140.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCCHH--
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE-- 74 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~~~-- 74 (211)
+.++.|..+.+++.-. ++|||++ |+|+++|++|+|..+... .++.+.+ .+.+.+|+.+++... .+....
T Consensus 45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~--~~i~~~~--~l~~~lTV~EnL~l~~~~~~~~~~e~ 120 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA--ALIAISS--GLNGQLTGIENIELKGLMMGLTKEKI 120 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe--eeEEecc--ccCCCCcHHHHHHhhhhhcCCCHHHH
Confidence 3567888999994443 5999999 999999999999876532 2233332 256678999987531 223222
Q ss_pred --HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 75 --KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 75 --~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
.+.++++.+++.+..++ ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++
T Consensus 121 ~e~i~elLe~lgL~~~ld~-~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIV 199 (549)
T PRK13545 121 KEIIPEIIEFADIGKFIYQ-PVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFI 199 (549)
T ss_pred HHHHHHHHHHcCChhHhhC-CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34568899999876664 78999999999999999999999999999999999999999999999765 5799999
Q ss_pred ecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 150 SHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|||++++..+||++++|.+|+++. .|+.+++.
T Consensus 200 SHdl~~i~~l~DrIivL~~GkIv~-~G~~~el~ 231 (549)
T PRK13545 200 SHSLSQVKSFCTKALWLHYGQVKE-YGDIKEVV 231 (549)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999864 56665543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=207.62 Aligned_cols=158 Identities=26% Similarity=0.332 Sum_probs=128.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+++..|..+.+++.-. ++|||++ |+|.++|++|+|..+. +..++|++|++. +++..|+.+++....
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~ 98 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPG--LKPELSALENLHFWA 98 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcc--cccCCcHHHHHHHHH
Confidence 3567788999994332 6999999 9999999999997643 246899999764 677789999875321
Q ss_pred ---CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C
Q psy2681 70 ---NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---Q 143 (211)
Q Consensus 70 ---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~ 143 (211)
......+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++ +
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 177 (198)
T TIGR01189 99 AIHGGAQRTIEDALAAVGLTGFEDL-PAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARG 177 (198)
T ss_pred HHcCCcHHHHHHHHHHcCCHHHhcC-ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 2223457789999999876654 78999999999999999999999999999999999999999999999875 5
Q ss_pred CeEEEEecChHHHHhhCCeEE
Q psy2681 144 GGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~ 164 (211)
.|||++||+...+. |++++
T Consensus 178 ~tii~~sH~~~~~~--~~~~~ 196 (198)
T TIGR01189 178 GIVLLTTHQDLGLV--EAREL 196 (198)
T ss_pred CEEEEEEccccccc--ceEEe
Confidence 79999999986553 35554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=203.86 Aligned_cols=136 Identities=32% Similarity=0.379 Sum_probs=116.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
++.|..+.++ |-+ ++|||++ ++|+++|++|+|..+. +..++|++|++. +++..|+.+++..
T Consensus 23 i~~G~~~~i~-G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~ 99 (178)
T cd03229 23 IEAGEIVALL-GPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA--LFPHLTVLENIAL 99 (178)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc--cCCCCCHHHheee
Confidence 4677888888 554 6999999 9999999999997432 236899999875 6677788776531
Q ss_pred hcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q 143 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~ 143 (211)
. ||||||||++||||++.+|+++||||||+|||+.++..+.++|+++ +
T Consensus 100 ~----------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~ 151 (178)
T cd03229 100 G----------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151 (178)
T ss_pred c----------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 9999999999999999999999999999999999999999999765 4
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
.|+|++|||++++..+||++++|++|+
T Consensus 152 ~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 152 ITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 799999999999999999999998874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=237.29 Aligned_cols=177 Identities=23% Similarity=0.257 Sum_probs=143.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ |+|+++|++|+|..++ +..++|+||++. +| +.|+.+|+...
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--lf-~~Ti~~Ni~~~ 440 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVH--LF-NDTIANNIAYA 440 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCce--ee-cchHHHHHhcC
Confidence 3567889999995554 5999999 9999999999998653 357999999975 45 46899999743
Q ss_pred c--CCCHHHHHHHHHhCCCCCccc-------c---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F--NLPYEKSRRQLGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~--~~~~~~~~~~l~~~gl~~~~~-------~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+++++.++++..|+.+... . ....+||||||||++||||++++|+++||||||++||+++...+.
T Consensus 441 ~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~ 520 (582)
T PRK11176 441 RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520 (582)
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHH
Confidence 2 245677777777777543211 1 123569999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.+. +.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 521 ~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e-~g~~~~l~~ 567 (582)
T PRK11176 521 AALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVE-RGTHAELLA 567 (582)
T ss_pred HHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEE-eCCHHHHHh
Confidence 999876 479999999998875 589999999999975 677776543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=214.26 Aligned_cols=173 Identities=22% Similarity=0.262 Sum_probs=133.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|.++.+++.-. ++|||++ |+|+++|++|+|..+. .++|++|++. +++ .++.+++............+.+
T Consensus 59 ~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~l 133 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSW--IMP-GTIKENIIFGVSYDEYRYKSVV 133 (282)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccc--ccc-cCHHHHhhcccccCHHHHHHHH
Confidence 467788999995543 5999999 9999999999998765 6999999864 555 4888887532222222333444
Q ss_pred HhCCCCCccc----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc--CCeEE
Q psy2681 81 GMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY--QGGVI 147 (211)
Q Consensus 81 ~~~gl~~~~~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~--~~tii 147 (211)
+.+++.+... ..++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+ ..+ +.|||
T Consensus 134 ~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIi 213 (282)
T cd03291 134 KACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRI 213 (282)
T ss_pred HHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 5455432111 1245799999999999999999999999999999999999999998754 433 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++||+++++. .|+++++|++|+++. .|+..++.
T Consensus 214 iisH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 246 (282)
T cd03291 214 LVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 246 (282)
T ss_pred EEeCChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999985 799999999999864 56666554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=206.64 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=136.8
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEE-ecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cCCCHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR-KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE 74 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~-~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~~~~~ 74 (211)
+.++.+..+.++ |-+ ++|||++ |+|+++|++|+|. .... .+ .+.+.+ .+++.+|+.+++... ++....
T Consensus 8 ~~i~~Ge~~~l~-G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~-~~-~~~~~~--~l~~~ltv~enl~~~~~~~~~~~~ 82 (213)
T PRK15177 8 FVMGYHEHIGIL-AAPGSGKTTLTRLLCGLDAPDEGDFIGLRGD-AL-PLGANS--FILPGLTGEENARMMASLYGLDGD 82 (213)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCccCCCCCEEEecCc-ee-cccccc--ccCCcCcHHHHHHHHHHHcCCCHH
Confidence 467889999999 554 5999999 9999999999996 4432 11 122333 367888999988532 233333
Q ss_pred HH-HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh-c-CCeEEEEec
Q psy2681 75 KS-RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-Y-QGGVILVSH 151 (211)
Q Consensus 75 ~~-~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-~-~~tiiivsH 151 (211)
.. ..+.+.++++...++ ++.+||+|||||++||||++.+|+++||||||+++|+.++..+.+.+.+ . +.|+|++||
T Consensus 83 ~~~~~~~~~~~l~~~~~~-~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH 161 (213)
T PRK15177 83 EFSHFCYQLTQLEQCYTD-RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTH 161 (213)
T ss_pred HHHHHHHHHhChhHHhhc-hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEEC
Confidence 33 334466778766554 7899999999999999999999999999999999999999999998754 3 468999999
Q ss_pred ChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 152 DERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 152 d~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++.++..+||++++|++|+++ +.++..+.+
T Consensus 162 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 191 (213)
T PRK15177 162 NPRLIKEHCHAFGVLLHGKIT-MCEDLAQAT 191 (213)
T ss_pred CHHHHHHhcCeeEEEECCeEE-EeCCHHHHH
Confidence 999999999999999999986 467766554
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=211.70 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=139.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCccc-----CCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELT-----PNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPC 62 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~-----p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~ 62 (211)
++..|..+.+++.-. ++|||++ |+|+.. |++|+|..++ +..++|+||++. +++ .++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~--~~~-~t~~ 101 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN--PFP-KSIF 101 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc--cCc-chHH
Confidence 456778888884443 6999999 999864 4899987432 235999999875 565 4888
Q ss_pred HHHHhh---cCC-C----HHHHHHHHHhCCCCC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 63 EYLMKL---FNL-P----YEKSRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 63 e~~~~~---~~~-~----~~~~~~~l~~~gl~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+++... .+. . .+.+.++++.+|+.. ..+ +++.+||+|||||++||||++.+|+++||||||+|||+.
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~ 180 (250)
T PRK14266 102 DNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD-KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180 (250)
T ss_pred HHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHH
Confidence 887532 111 1 133566788888743 233 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 131 SIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 131 ~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++..+.++|+++ +.|||++||+++++..+|+++++|++|+++. .|+.+++.
T Consensus 181 ~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14266 181 STTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE-SGLTDQIF 233 (250)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE-eCCHHHHH
Confidence 999999999875 4699999999999999999999999999864 57776653
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=201.78 Aligned_cols=138 Identities=28% Similarity=0.357 Sum_probs=117.9
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 71 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~ 71 (211)
+..|..+.+++.-. ++|||++ ++|+.+|++|+|..+. +..++|++|++. +++ .|+.+++
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~-~tv~~~i------ 95 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY--LFD-TTLRNNL------ 95 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe--eec-ccHHHhh------
Confidence 45677888884443 5999999 9999999999997654 245899999864 443 5776664
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEE
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILV 149 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiiv 149 (211)
+.+||+|||||++||||++.+|+++||||||++||+.++..+.+.|.++ +.|||++
T Consensus 96 ----------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~ 153 (178)
T cd03247 96 ----------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153 (178)
T ss_pred ----------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5689999999999999999999999999999999999999999999876 5699999
Q ss_pred ecChHHHHhhCCeEEEEeCCceee
Q psy2681 150 SHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
||+.+++. .|+++++|++|+++.
T Consensus 154 sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 154 THHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred ecCHHHHH-hCCEEEEEECCEEEe
Confidence 99999996 689999999999863
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=239.60 Aligned_cols=176 Identities=26% Similarity=0.355 Sum_probs=143.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +| +.|+.+|+....
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~--lf-~~TI~eNi~~~~ 563 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPR--LF-YGTLRDNIALGA 563 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChh--hh-hhhHHHHHhCCC
Confidence 467789999995554 5999999 9999999999998653 457999999985 44 469999997443
Q ss_pred -CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
..+.+++.++++..++.+.... .....||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 564 ~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~ 643 (694)
T TIGR03375 564 PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643 (694)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 3456777777777765432211 13457999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.+. +.|+|+|||+++.+. .||++++|++|++++ .|+.+++.+
T Consensus 644 l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e-~G~~~eLl~ 688 (694)
T TIGR03375 644 LKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVA-DGPKDQVLE 688 (694)
T ss_pred HHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEe-eCCHHHHHH
Confidence 9876 579999999999885 689999999999975 678776543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=234.77 Aligned_cols=176 Identities=20% Similarity=0.217 Sum_probs=143.6
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. + .+.|+.+|+...
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--l-f~~Ti~~Ni~~~ 429 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV--L-FNDTIANNIAYG 429 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc--c-ccccHHHHHhcC
Confidence 5677899999995553 6999999 9999999999998654 456999999985 4 456999998744
Q ss_pred c--CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F--NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~--~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.++++.+|+.+...+ ..-..||||||||++||||++.+|++++|||||++||+.+.+.+.
T Consensus 430 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~ 509 (571)
T TIGR02203 430 RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509 (571)
T ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 2 3567777788888776532221 023469999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|.+. ++|+|+|||+...+. .||+++++++|+++. .|+.+++.
T Consensus 510 ~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~-~g~~~~l~ 555 (571)
T TIGR02203 510 AALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVE-RGTHNELL 555 (571)
T ss_pred HHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEe-eCCHHHHH
Confidence 999886 479999999998874 589999999999875 57766553
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=233.10 Aligned_cols=170 Identities=17% Similarity=0.237 Sum_probs=133.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC-CcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP-NKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p-~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|..+| ++|+|..++ +..++|++|++........++.+++.
T Consensus 282 ~i~~Ge~~~i~-G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~ 360 (490)
T PRK10938 282 QVNPGEHWQIV-GPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL 360 (490)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence 35678888888 554 5999999 9998765 699987542 23599999986411112345655543
Q ss_pred hh-c------C-CC---HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 67 KL-F------N-LP---YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 67 ~~-~------~-~~---~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
.. . . .. .+.+.++++.+|+.+ ..+ +++.+|||||||||+||||++.+|++|||||||+|||+.++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 439 (490)
T PRK10938 361 SGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-APFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQL 439 (490)
T ss_pred hccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHH
Confidence 21 1 1 11 235678999999986 555 4889999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---C-CeEEEEecChHHHHh-hCCeEEEEeCCceeee
Q psy2681 135 LAEAIKNY---Q-GGVILVSHDERLIRE-TDCELWALEKKNIRKF 174 (211)
Q Consensus 135 l~~~l~~~---~-~tiiivsHd~~~~~~-~~~~v~~l~~g~i~~~ 174 (211)
+.++|+++ + .|||+||||++++.+ +|+++++|++|+++.+
T Consensus 440 l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 440 VRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999875 3 369999999999987 5899999999998654
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=205.22 Aligned_cols=156 Identities=24% Similarity=0.247 Sum_probs=128.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..++ +..++|++|++. +++..|+.+++....
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~~~~~~~ 100 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSG--INPYLTLRENCLYDIH 100 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccc--cCcCCCHHHHHHHHHh
Confidence 456788888884332 6999999 9999999999997643 236999999864 667889999876321
Q ss_pred -CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
......+.++++.+++....+ +++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.|+++ +.|
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~t 179 (200)
T PRK13540 101 FSPGAVGITELCRLFSLEHLID-YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179 (200)
T ss_pred cCcchHHHHHHHHHcCCchhhh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCE
Confidence 112345778999999976555 478999999999999999999999999999999999999999999999864 569
Q ss_pred EEEEecChHHHHhhCCe
Q psy2681 146 VILVSHDERLIRETDCE 162 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~ 162 (211)
||++||+..++.. +|.
T Consensus 180 iii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 180 VLLTSHQDLPLNK-ADY 195 (200)
T ss_pred EEEEeCCchhccc-cch
Confidence 9999999999866 454
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=232.62 Aligned_cols=175 Identities=23% Similarity=0.316 Sum_probs=145.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +|. .|+.+|+....
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~~Ni~~~~ 438 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVH--LFS-ATLRDNLLLAA 438 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccch--hhc-ccHHHHhhcCC
Confidence 466788999995443 5999999 9999999999998653 346999999975 554 68999986432
Q ss_pred -CCCHHHHHHHHHhCCCCCcccc---------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHT---------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~---------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
..+.+++.++++.+++.+...+ .....||||||||++||||++.+|+++||||||++||+.+...+.+.|
T Consensus 439 ~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l 518 (574)
T PRK11160 439 PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518 (574)
T ss_pred CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 3467778888999988754332 134679999999999999999999999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+. ++|+|+|||+++.+.. +|++++|++|++++ .|+.+++.
T Consensus 519 ~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~-~g~~~~l~ 561 (574)
T PRK11160 519 AEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIE-QGTHQELL 561 (574)
T ss_pred HHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 876 5799999999999865 89999999999975 57776654
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=202.40 Aligned_cols=144 Identities=28% Similarity=0.288 Sum_probs=121.1
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcc--cCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGEL--TPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~--~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
+..|..+.++ |-+ ++|||++ |+|+. +|++|+|..+. +..++|++|++. +++.+|+.+++....
T Consensus 32 i~~Ge~~~l~-G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~--~~~~~t~~~~i~~~~- 107 (194)
T cd03213 32 AKPGELTAIM-GPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDI--LHPTLTVRETLMFAA- 107 (194)
T ss_pred EcCCcEEEEE-CCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCccc--CCCCCcHHHHHHHHH-
Confidence 4566777888 554 6999999 99999 99999997642 346999999864 677889988774210
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
. ..+||||||||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|+|
T Consensus 108 -----------~-----------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 165 (194)
T cd03213 108 -----------K-----------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165 (194)
T ss_pred -----------H-----------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 0189999999999999999999999999999999999999999999875 46999
Q ss_pred EEecChH-HHHhhCCeEEEEeCCceee
Q psy2681 148 LVSHDER-LIRETDCELWALEKKNIRK 173 (211)
Q Consensus 148 ivsHd~~-~~~~~~~~v~~l~~g~i~~ 173 (211)
++|||++ .+..+||++++|++|+++.
T Consensus 166 i~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 166 CSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred EEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 9999996 7888999999999999853
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=237.22 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=142.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|.++.+++.-. ++|||++ ++|++.|++|+|..++ +..+||++|++. +| +.|+.+|+...
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~l~~ 572 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPY--IF-SGSILENLLLGA 572 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCce--eh-hHHHHHHHhccC
Confidence 467789999995553 6999999 9999999999998754 457999999985 55 45999999754
Q ss_pred -cCCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...+.+++.++++..++.+ .... ....||||||||++||||++++|+++||||||++||+.+...+.
T Consensus 573 ~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~ 651 (708)
T TIGR01193 573 KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV 651 (708)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHH
Confidence 2345667777777666532 2222 34679999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY-QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~-~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|.+. +.|+|+|||+++.+. .+|++++|++|+++. .|+.+++.
T Consensus 652 ~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~-~G~~~~L~ 696 (708)
T TIGR01193 652 NNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIE-QGSHDELL 696 (708)
T ss_pred HHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEEE-ECCHHHHH
Confidence 999876 579999999999885 589999999999975 68877654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=202.78 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=124.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCccc---CCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELT---PNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~---p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+++..|..+.+++.-. ++|||++ ++|+++ |++|+|..+. +..++|++|++. +++.+|+.+++.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~ 105 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDV--HFPTLTVRETLD 105 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccc--cCCCCcHHHHHh
Confidence 4677888899994443 5999999 999999 8999987532 346999999864 677889999875
Q ss_pred hhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----
Q psy2681 67 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142 (211)
Q Consensus 67 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---- 142 (211)
.... . . .+ +++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++
T Consensus 106 ~~~~-----~----~-------~~-~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 168 (202)
T cd03233 106 FALR-----C----K-------GN-EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL 168 (202)
T ss_pred hhhh-----h----c-------cc-cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 3211 0 0 23 367899999999999999999999999999999999999999999999865
Q ss_pred CCeEEEE-ecChHHHHhhCCeEEEEeCCceee
Q psy2681 143 QGGVILV-SHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 143 ~~tiiiv-sHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.|+|++ +|+.+.+.+.||++++|++|+++.
T Consensus 169 ~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 169 KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 3465555 556788889999999999999863
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=224.94 Aligned_cols=167 Identities=22% Similarity=0.254 Sum_probs=142.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|+.+++++... ++|||+| |+|.++|++|+|..++ ...|+.++|+.. +.|++||.||+....
T Consensus 31 v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~--L~p~LsVaeNifLgr 108 (500)
T COG1129 31 VRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS--LVPNLSVAENIFLGR 108 (500)
T ss_pred EeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh--ccCCccHHHHhhccc
Confidence 45688899994443 5999999 9999999999998653 236999999976 899999999985211
Q ss_pred ------C-CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 ------N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ------~-~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+ .+ ...+.++|+.+|+....+ .++.+||.||||.|+||||+..+++++||||||++|+....+.++++
T Consensus 109 e~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~-~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ 187 (500)
T COG1129 109 EPTRRFGLIDRKAMRRRARELLARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL 187 (500)
T ss_pred ccccCCCccCHHHHHHHHHHHHHHcCCCCChh-hhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 1 12 234677899999864444 48999999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++++ |.+||+|||.++++.++|||+.||.+|+.+.
T Consensus 188 ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 188 IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9876 5699999999999999999999999999864
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=202.78 Aligned_cols=148 Identities=27% Similarity=0.342 Sum_probs=121.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCc--ccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGE--LTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~--~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
+++..|..+.+++.-. ++|||++ |+|. .+|++|+|..+. +..++|++|++. +++..++.+++
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~~~~~~l 98 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP--EIPGVKNADFL 98 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh--hccCccHHHHH
Confidence 4567788888884443 5999999 9999 479999997542 224999999864 56666665543
Q ss_pred HhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---
Q psy2681 66 MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--- 142 (211)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--- 142 (211)
++...+|||||+||++||||++.+|+++||||||++||+.++..+.+.|.++
T Consensus 99 -------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~ 153 (200)
T cd03217 99 -------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153 (200)
T ss_pred -------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 1133689999999999999999999999999999999999999999999875
Q ss_pred CCeEEEEecChHHHHh-hCCeEEEEeCCceeeecCC
Q psy2681 143 QGGVILVSHDERLIRE-TDCELWALEKKNIRKFNGD 177 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~-~~~~v~~l~~g~i~~~~g~ 177 (211)
+.|||++||+++.+.+ ++|++++|++|++.. .+.
T Consensus 154 ~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~-~~~ 188 (200)
T cd03217 154 GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK-SGD 188 (200)
T ss_pred CCEEEEEecCHHHHHHhhCCEEEEEECCEEEE-Ecc
Confidence 5699999999999988 799999999999865 453
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=199.08 Aligned_cols=133 Identities=30% Similarity=0.400 Sum_probs=113.7
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+.+|++|++..+. +..++|++|++. +++ .++.+++
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~--~~~-~t~~e~l---- 96 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPF--LFS-GTIRENI---- 96 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCch--hcc-chHHHHh----
Confidence 456788888884443 5999999 9999999999997643 235899999864 444 4776654
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEE
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVI 147 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tii 147 (211)
||+||||||+||||++.+|+++||||||+|||+.++..+.++|+++ +.|||
T Consensus 97 ---------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii 149 (171)
T cd03228 97 ---------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVI 149 (171)
T ss_pred ---------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999876 46999
Q ss_pred EEecChHHHHhhCCeEEEEeCCc
Q psy2681 148 LVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
++|||++++.. ||++++|++|+
T Consensus 150 ~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 150 VIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999987 99999998874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=229.04 Aligned_cols=175 Identities=27% Similarity=0.369 Sum_probs=139.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|.++|++|+|..++ +..++|++|++. +++ .|+.+|+...
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--lf~-~ti~~Ni~~~ 415 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE--LFP-GTVAENIARF 415 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcc--ccc-ccHHHHHhcc
Confidence 4567889999995554 5999999 9999999999997653 347999999975 555 4899998633
Q ss_pred c-CCCHHHHHHHHH---------hC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLG---------MF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~---------~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.+.++ .+ |++..... ....||||||||++||||++.+|+++||||||++||+.+...+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~ 494 (544)
T TIGR01842 416 GENADPEKIIEAAKLAGVHELILRLPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494 (544)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHH
Confidence 2 234444444444 33 44443333 56789999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|.+. +.|+|++||+.+.+ +.||++++|++|+++. .|+.+++.
T Consensus 495 ~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~-~g~~~~l~ 541 (544)
T TIGR01842 495 NAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIAR-FGERDEVL 541 (544)
T ss_pred HHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEe-eCCHHHHh
Confidence 999875 47999999999976 4689999999999975 67766553
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=230.92 Aligned_cols=176 Identities=22% Similarity=0.323 Sum_probs=141.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +| +.|+.+|+...
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~Ti~~Ni~~~ 432 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG--LF-NRSIEDNIRVG 432 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc--cc-cccHHHHHhcC
Confidence 3567789999995543 6999999 9999999999998653 457999999985 55 46899998744
Q ss_pred c-CCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~-------~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. +.+++++.++++.+++.+.. +. .....||||||||++||||++++|+++||||||++||+.+...+.+
T Consensus 433 ~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~ 512 (588)
T PRK13657 433 RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKA 512 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 2 34566666666666653211 11 1235699999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|.+. ++|+|+|||+.+.+. .+|++++|++|+++. .|+.+++.
T Consensus 513 ~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~-~g~~~~l~ 557 (588)
T PRK13657 513 ALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVE-SGSFDELV 557 (588)
T ss_pred HHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEE-eCCHHHHH
Confidence 99876 579999999998875 589999999999975 57766553
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=236.77 Aligned_cols=176 Identities=21% Similarity=0.246 Sum_probs=140.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
++..|.++.+++.-. ++|||++ +.|+++|++|+|..++ +.+++|++|++. +| +.|+.+|+...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~--lF-~gTIreNI~~g~ 579 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV--LF-SGSVRENIAYGL 579 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc--cc-ccCHHHHHhcCC
Confidence 466889999994443 6999999 9999999999998654 457999999985 44 57999999743
Q ss_pred cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.+.+++++.++++..++.+...+ .....||||||||++||||++++|+++||||||++||+++...+.+.
T Consensus 580 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~ 659 (711)
T TIGR00958 580 TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES 659 (711)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHh
Confidence 23456677777777766432211 12357999999999999999999999999999999999999999983
Q ss_pred HHhcCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
....++|+|+|||+++.+. .+|+|++|++|++++ .|+.+++.+
T Consensus 660 ~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive-~Gt~~eL~~ 702 (711)
T TIGR00958 660 RSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVE-MGTHKQLME 702 (711)
T ss_pred hccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEE-eeCHHHHHh
Confidence 3233579999999999886 479999999999975 688776543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=229.66 Aligned_cols=176 Identities=21% Similarity=0.281 Sum_probs=139.8
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.+++.-. ++|||++ ++|.++|++|+|..++ +..++|++|++. ++ ..|+.+|+...
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~ 432 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAG--LF-NRSIRENIRLG 432 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCc--cC-cccHHHHHhcC
Confidence 4577889999994333 6999999 9999999999997643 347999999975 55 46899998643
Q ss_pred c-CCCHHHHHHHHHhCC-----------CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.+.++..+ ++..... ....||||||||++|||||+.+|+++||||||++||+.+.+.+.
T Consensus 433 ~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~ 511 (585)
T TIGR01192 433 REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511 (585)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 2 234455544444433 3333333 46789999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.+. +.|+|+|||+++.+. .+|++++|++|+++. .|+.+++.+
T Consensus 512 ~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 558 (585)
T TIGR01192 512 NAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIE-KGSFQELIQ 558 (585)
T ss_pred HHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEE-ECCHHHHHH
Confidence 999876 579999999999995 589999999999975 677766643
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=230.04 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=141.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +|. .|+.+|+...
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf~-~ti~~Ni~~~ 412 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF--LFS-DTVANNIALG 412 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe--ecc-ccHHHHHhcC
Confidence 4567888999995554 5999999 9999999999998653 356999999975 554 5999998643
Q ss_pred -cCCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...+.+++.++++..++.+ .... ....||||||||++||||++.+|+++||||||++||+.+...+.
T Consensus 413 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~ 491 (569)
T PRK10789 413 RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQIL 491 (569)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHH
Confidence 2345566666666666542 2222 34679999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+++ +.|+|++||+++.+. .+|++++|++|+++. .|+.+++.
T Consensus 492 ~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 537 (569)
T PRK10789 492 HNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQ-RGNHDQLA 537 (569)
T ss_pred HHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEE-ecCHHHHH
Confidence 999875 579999999998886 589999999999975 67776654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=201.05 Aligned_cols=146 Identities=22% Similarity=0.193 Sum_probs=120.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcc--cCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGEL--TPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 71 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~--~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~ 71 (211)
++..|..+.+++.-. ++|||++ |+|.. +|++|++..+. +..++|++|++. +++..|+.+++....
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~-- 104 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDV--HSPNLTVREALRFSA-- 104 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCc--cccCCcHHHHHHHHH--
Confidence 355677888884443 5999999 99986 48999998653 346999999864 677889999875210
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
.+ .+|||||+||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|||+
T Consensus 105 -------~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 163 (192)
T cd03232 105 -------LL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163 (192)
T ss_pred -------HH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 00 089999999999999999999999999999999999999999999865 579999
Q ss_pred EecChH-HHHhhCCeEEEEeC-Cceee
Q psy2681 149 VSHDER-LIRETDCELWALEK-KNIRK 173 (211)
Q Consensus 149 vsHd~~-~~~~~~~~v~~l~~-g~i~~ 173 (211)
+||+++ .+...||++++|++ |+++.
T Consensus 164 vtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 164 TIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred EEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 999998 47888999999998 88763
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=235.67 Aligned_cols=176 Identities=24% Similarity=0.317 Sum_probs=143.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. ++ +.|+.+|+...
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~--lf-~~ti~eNi~~~ 554 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV--LF-SRSIRDNIALC 554 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe--eh-hhhHHHHHhcC
Confidence 4678899999995553 6999999 9999999999998653 356999999975 44 46899998643
Q ss_pred c-CCCHHHHHHHHHhCCCC-----------CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.++++..++. ..... ....||||||||++||||++.+|+++||||||++||+.+...+.
T Consensus 555 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~ 633 (694)
T TIGR01846 555 NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHH
Confidence 2 34556666666665543 22222 35689999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.+. +.|+|++||+++.+.. ||++++|++|+++. .|+.+++.+
T Consensus 634 ~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~-~g~~~~l~~ 680 (694)
T TIGR01846 634 RNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAE-SGRHEELLA 680 (694)
T ss_pred HHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEE-eCCHHHHHH
Confidence 999876 5799999999999865 89999999999975 677776543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=191.34 Aligned_cols=121 Identities=44% Similarity=0.699 Sum_probs=111.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|....+++.-. ++|||++ ++|+.+|++|+|..+....++|++|
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------------------------------- 70 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------------------------------- 70 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------------------------------
Confidence 456778888884443 5999999 9999999999999887778899887
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD 160 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~ 160 (211)
||+||+||++||||++.+|+++||||||++||+.++..+.+.+++++.|+|++||+.+++..+|
T Consensus 71 ----------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~ 134 (144)
T cd03221 71 ----------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVA 134 (144)
T ss_pred ----------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CeEEEEeCCc
Q psy2681 161 CELWALEKKN 170 (211)
Q Consensus 161 ~~v~~l~~g~ 170 (211)
+++++|++|+
T Consensus 135 d~v~~l~~g~ 144 (144)
T cd03221 135 TKIIELEDGK 144 (144)
T ss_pred CEEEEEeCCC
Confidence 9999999885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=232.58 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=137.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc--------CC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--------NL 71 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~--------~~ 71 (211)
+.+..|..+.+++.-. ++|||++ ++|+.+|++|++....+.+++|++|++. +++. |+.+++.... +.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~ 549 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY--MTLG-TLRDQIIYPDSSEDMKRRGL 549 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC--CCCc-CHHHHHhcCCChhhhhccCC
Confidence 3567888999994443 5999999 9999999999998877778999999975 5555 9999986321 22
Q ss_pred CHHHHHHHHHhCCCCCccccCC---------CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIP---------IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~---------~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
..+++.++++.+++.+..++ + ..+||||||||++||||++++|+++||||||++||+.+...+.+.+++.
T Consensus 550 ~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~ 628 (659)
T TIGR00954 550 SDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF 628 (659)
T ss_pred CHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 45667788999999765443 3 3689999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 143 QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+.|+|+|||+++.+ +.||++++|+.+
T Consensus 629 ~~tvI~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 629 GITLFSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred CCEEEEEeCchHHH-HhCCEEEEEeCC
Confidence 88999999999987 578999999643
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-29 Score=231.76 Aligned_cols=177 Identities=24% Similarity=0.277 Sum_probs=143.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCC--cceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPN--KGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~--~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.+++.-. ++|||++ |+|..+|+ +|+|..++ ++++||++|++. +++.+|+.|++....
T Consensus 90 ~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~a~~ 167 (659)
T PLN03211 90 MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI--LYPHLTVRETLVFCSLL 167 (659)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccc--cCCcCCHHHHHHHHHHh
Confidence 456778888884443 5999999 99999885 89998654 246999999864 788899999875321
Q ss_pred ----CCCH----HHHHHHHHhCCCCCccc----cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 ----NLPY----EKSRRQLGMFGLPSYAH----TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ----~~~~----~~~~~~l~~~gl~~~~~----~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.... +.++++++.+||.+..+ ++.++.|||||||||+||++|+.+|+++||||||+|||+.++..+.+
T Consensus 168 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~ 247 (659)
T PLN03211 168 RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL 247 (659)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHH
Confidence 1122 23567899999976543 23567899999999999999999999999999999999999999999
Q ss_pred HHHhc---CCeEEEEecChH-HHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~-~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||++||+++ .+.+.+|++++|++|+++ +.|+.++..
T Consensus 248 ~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv-~~G~~~~~~ 295 (659)
T PLN03211 248 TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAM 295 (659)
T ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE-EECCHHHHH
Confidence 99865 579999999998 588899999999999986 467765543
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=201.16 Aligned_cols=153 Identities=24% Similarity=0.206 Sum_probs=126.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC--C
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L 71 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~--~ 71 (211)
.+..|.++.+++.-. ++|||++ ++|+.+|++|+|..++ ...++|++|++. +++..|+.+++..... .
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~--~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG--LKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC--CCccCCHHHHHHHHHHhcc
Confidence 456788889994443 5999999 9999999999998654 234899998764 5677899998854221 1
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEE
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN---YQGGVIL 148 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~---~~~tiii 148 (211)
....+.++++.+++.+..++ ++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+++ .+.|+|+
T Consensus 100 ~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 178 (195)
T PRK13541 100 SAETLYAAIHYFKLHDLLDE-KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLL 178 (195)
T ss_pred cHHHHHHHHHHcCCHhhhcc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 23456778899999876654 7899999999999999999999999999999999999999999999864 3579999
Q ss_pred EecChHHHHh
Q psy2681 149 VSHDERLIRE 158 (211)
Q Consensus 149 vsHd~~~~~~ 158 (211)
+||+.+.+..
T Consensus 179 ~sh~~~~i~~ 188 (195)
T PRK13541 179 SSHLESSIKS 188 (195)
T ss_pred EeCCccccch
Confidence 9999998875
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=223.93 Aligned_cols=186 Identities=39% Similarity=0.671 Sum_probs=163.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC--CCHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQ 79 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~--~~~~~~~~~ 79 (211)
+.++.|+++++=.. +.|||+| ++|.+.|..|.++.....+++++.|+....+.-+.+..++....+. ...+.++.+
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~i 492 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSI 492 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHH
Confidence 45778999994333 4899999 9999999999999877777888888766556667788888876554 455678899
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhh
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 159 (211)
+.+|||.......++++||+|||.||.+|+.++.+|.+|+|||||||||.++...+.+.|+++.++||+||||..++..+
T Consensus 493 lgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 493 LGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQV 572 (614)
T ss_pred HHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHH
Confidence 99999997766779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCceeeecCChHHHHHHHHHHh
Q psy2681 160 DCELWALEKKNIRKFNGDFDDYREKLLTSL 189 (211)
Q Consensus 160 ~~~v~~l~~g~i~~~~g~~~~~~~~~~~~~ 189 (211)
++++|+..++.+..|+|++..|.....++.
T Consensus 573 aeEi~~c~~~~~~~~~G~i~~yk~~l~~~~ 602 (614)
T KOG0927|consen 573 AEEIWVCENGTVTKWDGDIEIYKEHLKKKR 602 (614)
T ss_pred HHHhHhhccCceeecCccHHHHHHHHHHHH
Confidence 999999999999999999999887665554
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=228.34 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=141.3
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|+||++. ..+.|+.+|+...
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~---lf~~Ti~~Ni~~~ 437 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV---LFAASVMENIRYG 437 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc---cccccHHHHHhcC
Confidence 4577899999995553 6999999 9999999999998653 346999999975 3456899998643
Q ss_pred c-CCCHHHHHHHHHhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+.+++.++++.+|+.+ .... ....||||||||++||||++.+|+++||||||++||+.+.+.+.
T Consensus 438 ~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~ 516 (576)
T TIGR02204 438 RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ 516 (576)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHH
Confidence 2 234566777777766542 1112 34579999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|++. +.|+|+|||+.+.+. .+|+++++++|+++. .|+.+++.
T Consensus 517 ~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~-~g~~~~l~ 562 (576)
T TIGR02204 517 QALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVA-QGTHAELI 562 (576)
T ss_pred HHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEe-eecHHHHH
Confidence 999876 579999999998875 589999999999975 57766543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=226.61 Aligned_cols=173 Identities=27% Similarity=0.345 Sum_probs=140.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|.++.++ |-. ++||+++ +.|++.|++|+|..++ +.+++|++|++. +|. .|+.+|+....
T Consensus 352 i~~Ge~vaiV-G~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~--LF~-~TI~~NI~~g~ 427 (567)
T COG1132 352 IEPGEKVAIV-GPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL--LFS-GTIRENIALGR 427 (567)
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce--eec-ccHHHHHhcCC
Confidence 5678899988 554 5999999 9999999999998743 567999999975 665 78999997543
Q ss_pred C-CCHHHHHHHHHhCC-----------CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 N-LPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ~-~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. .+++++.++++..+ ++..... ....||||||||++||||++.+|++++||||||+||+.+...+.+
T Consensus 428 ~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~ 506 (567)
T COG1132 428 PDATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506 (567)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH
Confidence 2 45566665555543 3333322 345799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+.+. ++|+|+|+|.+..+.. +|+|++|++|++++ .|+.+++..
T Consensus 507 ~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e-~G~h~eLl~ 552 (567)
T COG1132 507 ALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVE-RGTHEELLA 552 (567)
T ss_pred HHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEE-ecCHHHHHH
Confidence 99754 4599999999999987 89999999999875 688877654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=196.05 Aligned_cols=163 Identities=26% Similarity=0.315 Sum_probs=139.6
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc---
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--- 69 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~--- 69 (211)
.|++|.+++=-. ++|||+| ++-++.|++|++.+.+ +.+|+|+.|.|. +|++ ||.+|+...+
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa--Lfg~-tVeDNlifP~~~r 104 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA--LFGD-TVEDNLIFPWQIR 104 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcc--cccc-chhhccccchHHh
Confidence 577888883333 5999999 9999999999997643 557999999986 6664 7788875433
Q ss_pred --CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C
Q psy2681 70 --NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q 143 (211)
Q Consensus 70 --~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~ 143 (211)
..++..+..++++|++.+....+++.+||||||||++|+|.|..-|++|+|||||++||+.+++.+.++|.++ .
T Consensus 105 ~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 105 NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 3356678889999999887767789999999999999999999999999999999999999999999999876 4
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
.+++.||||.+.+.+.++++|-+..|.+
T Consensus 185 vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 185 VAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred eEEEEEecChHHHhhhhheEEEeccCcc
Confidence 6999999999999999999999988865
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=222.53 Aligned_cols=175 Identities=22% Similarity=0.299 Sum_probs=145.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-c
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-F 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~ 69 (211)
+..|+++++++.=. ++|||++ +.|...|++|+|..++ +..+++++|.+. +| .-|+.+|+... .
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~h--lF-~~Tlr~NL~lA~~ 437 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVH--LF-SGTLRDNLRLANP 437 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchH--HH-HHHHHHHHhhcCC
Confidence 56789999994443 5999999 9999999999998654 336899999864 44 45888888643 3
Q ss_pred CCCHHHHHHHHHhCCCCCccccC----------CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
+.+++++.++++++||++..... --..||||||||++|||+|+++.+++||||||.|||+.+.+++++.+
T Consensus 438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll 517 (573)
T COG4987 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL 517 (573)
T ss_pred CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH
Confidence 45678888999999987544332 23579999999999999999999999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+. ++|+|+|||++..++. +|+|++|++|++++ .|++.++..
T Consensus 518 ~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie-~G~~~~Ll~ 561 (573)
T COG4987 518 FEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIE-EGTHAELLA 561 (573)
T ss_pred HHHhcCCeEEEEecccccHhh-cCEEEEEECCeeee-cCCHHhhhc
Confidence 765 6799999999999975 59999999999975 788877654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=192.06 Aligned_cols=135 Identities=22% Similarity=0.256 Sum_probs=105.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++.-. ++|||++ |+|+++|++|+|..+.. .+ . ..+..+.. -
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~-~~-----------~-~~~~~~~~--------------~ 74 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK-EV-----------S-FASPRDAR--------------R 74 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE-EC-----------C-cCCHHHHH--------------h
Confidence 456778888884443 6999999 99999999999976531 00 0 00110000 0
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIR 157 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~ 157 (211)
..++ .+.+||||||||++||||++.+|+++||||||++||+.++..+.+.|+++ +.|+|++|||++++.
T Consensus 75 ~~i~--------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 75 AGIA--------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCeE--------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 0011 11239999999999999999999999999999999999999999999876 569999999999999
Q ss_pred hhCCeEEEEeCCcee
Q psy2681 158 ETDCELWALEKKNIR 172 (211)
Q Consensus 158 ~~~~~v~~l~~g~i~ 172 (211)
++|+++++|++|+++
T Consensus 147 ~~~d~~~~l~~g~i~ 161 (163)
T cd03216 147 EIADRVTVLRDGRVV 161 (163)
T ss_pred HhCCEEEEEECCEEE
Confidence 999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=195.77 Aligned_cols=181 Identities=26% Similarity=0.303 Sum_probs=145.0
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---c
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F 69 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~ 69 (211)
|+...+| |=+ ++|||+| ++|.+.|++|++..+. .++-+.+||+.. +.+..++.|.+... +
T Consensus 27 Gev~ail-GPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~--laFpFtv~eVV~mGr~p~ 103 (259)
T COG4559 27 GEVLAIL-GPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSS--LAFPFTVQEVVQMGRIPH 103 (259)
T ss_pred CcEEEEE-CCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcc--cccceEHHHHHHhccccc
Confidence 5566677 555 5999999 9999999999998653 235688999865 55667888877521 1
Q ss_pred --CCC--HHH--HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 --NLP--YEK--SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 --~~~--~~~--~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~------~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.. +.. +..+|...++..+..+ ...+|||||||||.+||.|++ ++++|+||||||+||+..+..+++
T Consensus 104 ~~g~~~~e~~~i~~~ala~~d~~~la~R-~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~ 182 (259)
T COG4559 104 RSGREPEEDERIAAQALAATDLSGLAGR-DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR 182 (259)
T ss_pred ccCCCchhhHHHHHHHHHHcChhhhhcc-chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHH
Confidence 111 222 5678999999887765 678999999999999999974 445899999999999999999999
Q ss_pred HHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH-HHHHHHHHhhhh
Q psy2681 138 AIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YREKLLTSLGEA 192 (211)
Q Consensus 138 ~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~-~~~~~~~~~~~~ 192 (211)
+.+++ +..|+.|-||++.+..+|||+++|.+|+++. .|++.+ +..+.++..|..
T Consensus 183 laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~vlt~Etl~~vyg~ 240 (259)
T COG4559 183 LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQDVLTDETLERVYGA 240 (259)
T ss_pred HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHHhcCHHHHHHHhCC
Confidence 99877 5699999999999999999999999999975 677655 556777777654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=203.55 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=126.8
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEE-----------ecC-------------CeEEEEEeCCCCCCCCC
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELR-----------KSP-------------RLRIGKFDQHSGEHLFP 57 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~~~l~~ 57 (211)
+..|..+.+++.-. ++|||++ ++|+++|++|+|+ ... ...++|++|... +++
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ 100 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVD--LIP 100 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhc--cCc
Confidence 35677888884333 5999999 9999999999995 111 113678888754 344
Q ss_pred CCCHHHHHHhhcC--CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 58 DDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 58 ~~t~~e~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.++.+++..... .....+.++++.+|+.+..++ ++.+||||||||++||||++.+|+++||||||++||+.++..+
T Consensus 101 -~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l 178 (255)
T cd03236 101 -KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR-NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNA 178 (255)
T ss_pred -hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHH
Confidence 344444432211 113456789999999876654 7899999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 136 AEAIKNY---QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
.+.|+++ +.|||++|||++++..+||++++|++
T Consensus 179 ~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 179 ARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence 9998765 57999999999999999999999954
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=244.16 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=144.8
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|.++.++ |-. ++|||++ +.|+++|++|+|..++ +.+++|+||+|. +|. -|+.+|+..
T Consensus 1257 l~I~~GekvaIV-G~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~--LF~-gTIr~NL~~ 1332 (1495)
T PLN03232 1257 FFVSPSEKVGVV-GRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPV--LFS-GTVRFNIDP 1332 (1495)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCe--eeC-ccHHHHcCC
Confidence 457789999999 553 5999999 9999999999998653 567999999985 565 599999864
Q ss_pred hcCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++++.++++..++.+...+ .....||||||||++|||||+++|++||||||||+||+++...+.+
T Consensus 1333 ~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~ 1412 (1495)
T PLN03232 1333 FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQR 1412 (1495)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 334566777777777766432211 1335799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|+|+|+|.++.+.. ||+|++|++|++++ .|+++++.
T Consensus 1413 ~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE-~Gt~~eLl 1457 (1495)
T PLN03232 1413 TIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-YDSPQELL 1457 (1495)
T ss_pred HHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 99875 5799999999999976 79999999999987 47776654
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=216.03 Aligned_cols=184 Identities=42% Similarity=0.655 Sum_probs=156.5
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-cCCCHHHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQL 80 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~l 80 (211)
+.-.||+++ |=+ ..||++| +.|...|..|.+...++.+++|++|..-..+....+..++.... .+..++.++..+
T Consensus 388 e~~sRi~~v-g~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl 466 (582)
T KOG0062|consen 388 ESDSRISRV-GENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHL 466 (582)
T ss_pred chhhhhhee-ccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHH
Confidence 344577777 443 5899999 89999999999999999999999998653333333445555443 356788899999
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD 160 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~ 160 (211)
..||++......++..||||||-||+||.+...+|.+|+||||||+||.++...+...|+.+++.||+||||.+++..+|
T Consensus 467 ~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c 546 (582)
T KOG0062|consen 467 GSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLC 546 (582)
T ss_pred HhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcC
Confidence 99999876655578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCceeeecCChHHHHHHHHHHh
Q psy2681 161 CELWALEKKNIRKFNGDFDDYREKLLTSL 189 (211)
Q Consensus 161 ~~v~~l~~g~i~~~~g~~~~~~~~~~~~~ 189 (211)
..+|+.++|++..+.|...++++.....+
T Consensus 547 ~E~Wvve~g~vt~ieg~~~~yKkl~~~e~ 575 (582)
T KOG0062|consen 547 KELWVVEDGKVTPIEGGIDKYKKLLGAEL 575 (582)
T ss_pred ceeEEEcCCcEEeeeccHHHHHHHHHHHH
Confidence 99999999999999999988877554444
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=214.71 Aligned_cols=166 Identities=25% Similarity=0.353 Sum_probs=143.6
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+..|+-+.++ |=+ ++|||.+ +.|.++|++|+|.+++ +..||+|+|++. +++.+||.||+...
T Consensus 27 v~~GeIHaLL-GENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~--Lv~~lTV~ENiiLg 103 (501)
T COG3845 27 VKKGEIHALL-GENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFM--LVPTLTVAENIILG 103 (501)
T ss_pred ecCCcEEEEe-ccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccc--cccccchhhhhhhc
Confidence 4567788888 554 5999999 9999999999998654 346999999976 89999999998632
Q ss_pred cC------CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FN------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~------~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+ .+++.++.+++||+-..+. ++.+||-|+||||.|.+||..+|++|||||||+-|-|...+.|++.
T Consensus 104 ~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~-~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~ 182 (501)
T COG3845 104 LEPSKGGLIDRRQARARIKELSERYGLPVDPDA-KVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI 182 (501)
T ss_pred CccccccccCHHHHHHHHHHHHHHhCCCCCccc-eeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 21 12 3456788999999876665 8999999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++++ |+|||+|||-+.++.++|||+.+|..|+++.
T Consensus 183 l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 183 LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 8866 6799999999999999999999999999753
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=224.73 Aligned_cols=161 Identities=25% Similarity=0.302 Sum_probs=130.1
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEE-----------ecC-------------CeEEEEEeCCCC--CC
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR-----------KSP-------------RLRIGKFDQHSG--EH 54 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~--~~ 54 (211)
+..|..+.++ |-+ ++|||+| |+|+++|++|+|. ..+ ..++++.+|... +.
T Consensus 96 i~~Gev~gLv-G~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 96 PKEGKVTGIL-GPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence 3457788888 665 5999999 9999999999986 211 124566666532 11
Q ss_pred CCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 55 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 55 l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
++ ..|+.+++... .....+.++++.+|+....++ ++.+|||||||||+||+||+.+|+++||||||++||+.++.+
T Consensus 175 ~~-~~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~-~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~ 250 (590)
T PRK13409 175 VF-KGKVRELLKKV--DERGKLDEVVERLGLENILDR-DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLN 250 (590)
T ss_pred hh-cchHHHHHHhh--hHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 22 23777777532 123467889999999876664 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 135 LAEAIKNY--QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 135 l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+.++|+++ +.|||+||||++++..++|++++|.++
T Consensus 251 l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 251 VARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999877 789999999999999999999999764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=224.27 Aligned_cols=109 Identities=26% Similarity=0.497 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
++.+++..+|+.....++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++++.|||+||||++
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred HHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45567888888643334578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 155 LIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
++..+|+++++|++|++..+.|+++.+..
T Consensus 403 ~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 403 FLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999878898876543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=221.63 Aligned_cols=161 Identities=28% Similarity=0.335 Sum_probs=131.8
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
|++..|.++.+++.-. ++|||++ ++|+++|++|+|..++ ++.++|++|++. +| +.|+.+|+...
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~ti~~Ni~~~ 419 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF--LF-AGTIAENIRLA 419 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCc--cc-CcCHHHHHhcc
Confidence 5677899999994443 5999999 9999999999997653 346999999985 55 46999998643
Q ss_pred c-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ..+++++.++++..++.+...+ .....||||||||++||||++.+|+++||||||++||+.+.+.+.+
T Consensus 420 ~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~ 499 (529)
T TIGR02857 420 RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTE 499 (529)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2 3456677778887777542221 1346799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEE
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
.+.+. +.|+|+|||+++.+. .||++++|
T Consensus 500 ~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 500 ALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99876 579999999999985 58998864
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=190.15 Aligned_cols=125 Identities=25% Similarity=0.249 Sum_probs=109.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..+..+.+++.-. ++|||++ ++|+++|++|+|..+. ..++|++|++.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~q~~~---------------------------- 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-ITPVYKPQYID---------------------------- 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-EEEEEEcccCC----------------------------
Confidence 456788899994443 5999999 9999999999998765 35888887531
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
||||||||++||||++.+|+++||||||++||+.++..+.+.+.++ +.|||++|||++++
T Consensus 72 ----------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 72 ----------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred ----------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 9999999999999999999999999999999999999999999765 37999999999999
Q ss_pred HhhCCeEEEEeCCcee
Q psy2681 157 RETDCELWALEKKNIR 172 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~ 172 (211)
..+|+++++|+++..+
T Consensus 136 ~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 136 DYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHhCCEEEEEcCCCcc
Confidence 9999999999887553
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=222.49 Aligned_cols=171 Identities=17% Similarity=0.124 Sum_probs=134.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|.++.+++.-. ++|||++ ++|+++|++|+|..++ +..++|++|++. +|. .|+.++ .
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--lf~-~ti~~n---~ 417 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH--LFD-QLLGPE---G 417 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChh--HHH-Hhhccc---c
Confidence 4567888999994443 6999999 9999999999997643 357999999974 443 344444 1
Q ss_pred cCCCHHHHHHHHHhCCCCCcccc--C--CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh---
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHT--I--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--- 141 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~--~--~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~--- 141 (211)
...+.+.+.++++.+++...... . ....||||||||++||||++.+|+++||||||++||+.+...+.+.+.+
T Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~ 497 (547)
T PRK10522 418 KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ 497 (547)
T ss_pred CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 12335567788889888754321 0 1358999999999999999999999999999999999999999888753
Q ss_pred -cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 142 -YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 142 -~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
.+.|+|+|||+++.+. .+|++++|++|++++..++..
T Consensus 498 ~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 498 EMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred hCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 2679999999998765 689999999999987766543
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-28 Score=224.40 Aligned_cols=166 Identities=21% Similarity=0.278 Sum_probs=138.9
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|+.+.+++.-. ++|||++ |+|+.+|++|++..+. +..++|++|++. +++..++.+++.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~ 108 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH--LLSHLTAAQNVE 108 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcc--cCCCCCHHHHHH
Confidence 56788888884443 5999999 9999999999997542 236999999874 788889988875
Q ss_pred hh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.. .+++.++++.+|+.+..+. ++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll 187 (648)
T PRK10535 109 VPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAIL 187 (648)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 31 1222 2346778999999876654 78999999999999999999999999999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+++ +.|+|++||+.+.+. .||++++|++|+++.
T Consensus 188 ~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 188 HQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVR 223 (648)
T ss_pred HHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEe
Confidence 765 569999999999886 699999999999865
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-28 Score=242.51 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=143.5
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|.++.++ |-. ++|||++ +.|++.|++|+|..++ |.+++++||+|. +|. -|+.+|+..
T Consensus 1260 ~~I~~GekVaIV-GrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~--LF~-GTIreNLd~ 1335 (1622)
T PLN03130 1260 FEISPSEKVGIV-GRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV--LFS-GTVRFNLDP 1335 (1622)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCc--ccc-ccHHHHhCc
Confidence 456789999999 553 5999999 9999999999998653 567999999985 554 599999864
Q ss_pred hcCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++++.++++..++.+...+ .....||||||||++|||||+.+|++||||||||+||.++...+.+
T Consensus 1336 ~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~ 1415 (1622)
T PLN03130 1336 FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415 (1622)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 434566777777777666432211 1235799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|+|+|+|.++.+.. ||+|++|++|++++ .|+++++.
T Consensus 1416 ~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE-~Gt~~eLl 1460 (1622)
T PLN03130 1416 TIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE-FDTPENLL 1460 (1622)
T ss_pred HHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE-eCCHHHHH
Confidence 99875 5799999999999976 69999999999986 46665543
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=201.69 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=122.8
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHh
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 82 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~ 82 (211)
..|.-+.+++-=. ++||+-| +.|+++|++|+|...+... ..++ .....+++.++|+.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i-------------~~~~--------~~~~~~~v~elL~~ 95 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI-------------TKLS--------KEERRERVLELLEK 95 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-------------hhcc--------hhHHHHHHHHHHHH
Confidence 4566677773333 5999999 9999999999998764320 0111 01123568889999
Q ss_pred CCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHh
Q psy2681 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRE 158 (211)
Q Consensus 83 ~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~ 158 (211)
+|+......+++++|||||+||++|||||+.+|+++++|||+|+||...+.++.+++.++ +.|.+++|||+..+..
T Consensus 96 Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 96 VGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 999774445689999999999999999999999999999999999999999999999765 6799999999999999
Q ss_pred hCCeEEEEeCCceeee
Q psy2681 159 TDCELWALEKKNIRKF 174 (211)
Q Consensus 159 ~~~~v~~l~~g~i~~~ 174 (211)
+|||+.+|..|++++.
T Consensus 176 isdri~VMy~G~iVE~ 191 (268)
T COG4608 176 ISDRIAVMYLGKIVEI 191 (268)
T ss_pred hcccEEEEecCceeEe
Confidence 9999999999999874
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-28 Score=231.38 Aligned_cols=174 Identities=25% Similarity=0.272 Sum_probs=138.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+..|.-+.+++.=. ++||+++ +.+++.|++|+|..++ +.+||.|.|+|- ....|+.||+....
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePv---lF~~tI~eNI~~G~~ 452 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV---LFATTIRENIRYGKP 452 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechh---hhcccHHHHHhcCCC
Confidence 34567788885554 5999999 9999999999998653 557999999984 55689999997443
Q ss_pred CCCHHHHHHHHHhCCC-----------CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+.+.+++.++.+..+. +..... +-.+||||||||++|||||+.+|++|||||||++||+++...+.+.
T Consensus 453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge-~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~A 531 (1228)
T KOG0055|consen 453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGE-RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEA 531 (1228)
T ss_pred cccHHHHHHHHHHccHHHHHHhhHHhhcccccC-CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHH
Confidence 3345555554443332 222222 2346999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.+. +.|.|+|+|++..+.+ +|++++|++|++++ .|+.+++..
T Consensus 532 Ld~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE-~G~h~ELi~ 576 (1228)
T KOG0055|consen 532 LDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE-QGTHDELIA 576 (1228)
T ss_pred HHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE-ecCHHHHHh
Confidence 9876 6799999999999987 89999999999986 677776544
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=200.77 Aligned_cols=178 Identities=25% Similarity=0.392 Sum_probs=138.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCC----------eEEEEEeCCCCCCCCCCCCHHH---HHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPR----------LRIGKFDQHSGEHLFPDDTPCE---YLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~t~~e---~~~ 66 (211)
++-.|.+...+ |-+ ++||++| ++|.+.|++|.|..++. +++++++-.. .++..++.+.+ ...
T Consensus 46 ~IP~G~ivgfl-GaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk-~ql~Wdlp~~ds~~v~~ 123 (325)
T COG4586 46 EIPKGEIVGFL-GANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK-LQLWWDLPALDSLEVLK 123 (325)
T ss_pred ecCCCcEEEEE-cCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhh-heeeeechhhhhHHHHH
Confidence 34567777777 665 5999999 99999999999987531 1344443221 12333333322 222
Q ss_pred hhcCCCHH----HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 67 KLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 67 ~~~~~~~~----~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
..+..+.. +...+.+.+++++.... ++..||-|||.|+.||.+|+++|++|+|||||-|||+.++..+.++++++
T Consensus 124 ~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~-~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 124 LIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred HHHhCCHHHHHHHHHHHHHHhcchhhhhh-hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 34455443 44567788899887775 89999999999999999999999999999999999999999999999876
Q ss_pred ----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHHH
Q psy2681 143 ----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 143 ----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+.||+++||+++.+...|+||+.++.|+++ |+|+..++.+.
T Consensus 203 n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~ 247 (325)
T COG4586 203 NEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQ 247 (325)
T ss_pred HHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHH
Confidence 469999999999999999999999999996 78998876553
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=222.14 Aligned_cols=174 Identities=22% Similarity=0.236 Sum_probs=142.4
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCC---cceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPN---KGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~---~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
+..|..+.+++.-. ++|||++ |+|..+|. +|+|..++ ++.+||++|++. +++.+|+.|++....
T Consensus 48 i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~--~~~~lTV~e~l~f~~~ 125 (617)
T TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDL--FIPTLTVREHLMFQAH 125 (617)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccc--cCccCcHHHHHHHHHh
Confidence 45677788885554 5999999 99999885 79998654 236899999875 788999999886321
Q ss_pred -C----CC----HHHHHHHHHhCCCCCccccCCCC------CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 70 -N----LP----YEKSRRQLGMFGLPSYAHTIPIR------DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 70 -~----~~----~~~~~~~l~~~gl~~~~~~~~~~------~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
. .. ...+.++++.+|+.+..++ +++ .|||||||||+||++|+.+|++++|||||+|||+.+...
T Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t-~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~ 204 (617)
T TIGR00955 126 LRMPRRVTKKEKRERVDEVLQALGLRKCANT-RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204 (617)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCchhcCcC-ccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHH
Confidence 1 11 2346789999999876665 554 599999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChH-HHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 135 LAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~-~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.+.|++. +.|||+++|++. .+.+.+|++++|++|+++ +.|+.++.
T Consensus 205 l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v-~~G~~~~~ 254 (617)
T TIGR00955 205 VVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQA 254 (617)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE-EECCHHHH
Confidence 99999875 579999999995 778899999999999986 46776654
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-29 Score=196.82 Aligned_cols=182 Identities=18% Similarity=0.265 Sum_probs=149.0
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
..|-.-++| |=+ ++|||+. ++.++++++|+|+..+ .++++.+-|.+. +...+||.+.+.+.
T Consensus 25 ~~g~iTs~I-GPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~--i~~rlTV~dLv~FGRf 101 (252)
T COG4604 25 PKGGITSII-GPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENH--INSRLTVRDLVGFGRF 101 (252)
T ss_pred cCCceeEEE-CCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhch--hhheeEHHHHhhcCCC
Confidence 344445667 554 5999999 8999999999998653 235677778754 67788998887532
Q ss_pred -c--C-C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 69 -F--N-L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 69 -~--~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+ + . +...+.++++.++|++..++ +..+||||||||..||+.++++.+.++||||.|+||......+++.|++
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L~~l~dr-yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHLEDLSDR-YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcccchHHH-hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHH
Confidence 1 1 1 23457889999999987775 8999999999999999999999999999999999999999888888864
Q ss_pred ----cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhhh
Q psy2681 142 ----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLGE 191 (211)
Q Consensus 142 ----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~~ 191 (211)
+++||++|-||++++..++|.++.|++|+++. .|++++..+ +.++.++.
T Consensus 181 la~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~-~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK-QGSPDEIIQPEILSEIYD 234 (252)
T ss_pred HHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe-cCCHHHhcCHHHHHHHhc
Confidence 58999999999999999999999999999975 788877654 67777765
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=213.62 Aligned_cols=174 Identities=22% Similarity=0.233 Sum_probs=144.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-c
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-F 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~ 69 (211)
+.+|.++++++.-. ++||++| +.+... .+|+|..++ |+.|||+||+.. + .+.|+..|+... .
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~--L-FndTIl~NI~YGn~ 450 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV--L-FNDTILYNIKYGNP 450 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc--c-cchhHHHHhhcCCC
Confidence 56899999996665 5999999 999988 899998653 567999999864 4 456889998643 2
Q ss_pred CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
..+.+++.+..+++|+.+...+ .+-..|||||||||+||||++.+|+++++|||||+||.++...+.+.+
T Consensus 451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i 530 (591)
T KOG0057|consen 451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI 530 (591)
T ss_pred CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHH
Confidence 3457788888899888653322 134579999999999999999999999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+. ++|+|+|-|+++.+.. ||+|+++++|++.+ .|+.+++..
T Consensus 531 ~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e-~gth~ell~ 574 (591)
T KOG0057|consen 531 MDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKE-YGTHSELLA 574 (591)
T ss_pred HHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEE-eccHHHHhh
Confidence 874 5799999999999976 59999999999976 477766554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=205.11 Aligned_cols=176 Identities=23% Similarity=0.296 Sum_probs=135.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-----CcceEEecC---------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP-----NKGELRKSP---------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p-----~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t 60 (211)
|+.+|+.+++++-=. ++|-..+ +.|+++. -+|+|...+ ..+|+++||+|..+++|-.|
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 567888999984333 2343334 5555532 256665432 24799999999877888777
Q ss_pred HHHHHH----hhcCCC----HHHHHHHHHhCCCCCc--cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 61 PCEYLM----KLFNLP----YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 61 ~~e~~~----~~~~~~----~~~~~~~l~~~gl~~~--~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
+...+. ...+.+ +.++.++|+.+|+.+. ..+.++.+|||||||||.||+||+.+|++||.||||++||+.
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVt 191 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVT 191 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhh
Confidence 655443 222333 3456689999999752 223478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
.+.+++++|+++ +.++++||||+..+.+++|||+||.+|.+++ .|...
T Consensus 192 vQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~ 243 (534)
T COG4172 192 VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTE 243 (534)
T ss_pred hHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHH
Confidence 999999999865 6799999999999999999999999999986 44443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=237.18 Aligned_cols=175 Identities=14% Similarity=0.190 Sum_probs=144.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++.=. ++|||++ +.|+++|++|+|..++ +..++|+||+|. +|. -|+.+|+....
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~--LF~-gTIreNIdp~~ 1408 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPV--LFD-GTVRQNVDPFL 1408 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCc--ccc-ccHHHHhCccc
Confidence 467899999994443 5999999 9999999999998653 567999999985 555 59999996433
Q ss_pred CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN-PDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~-p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
..+++++.++++..++.+.... .....||||||||++|||||+++ |++||||||||+||+++...+.+.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 4567788888888887643211 12357999999999999999995 899999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|++. +.|+|+|+|.++.+.. ||+|++|++|++++ .|+++++.
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE-~Gt~~eLl 1532 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAE-MGSPRELV 1532 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 9875 5799999999999865 69999999999986 57777664
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=219.00 Aligned_cols=166 Identities=19% Similarity=0.164 Sum_probs=131.4
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+.+..|..+.+++.-. ++|||++ ++|.++|++|+|..++ +..++|++|++. +|. .|+.++. .
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~--lf~-~ti~~n~--~ 437 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH--LFD-DLIGPDE--G 437 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChh--hhh-hhhhccc--c
Confidence 3567888999995553 5999999 9999999999997643 346999999874 444 3455553 1
Q ss_pred cCCCHHHHHHHHHhCCCCCccccC-----CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-H--
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHTI-----PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-K-- 140 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~-- 140 (211)
.....+++.++++.+++.+..... ....||||||||++||||++.+|+++||||||++||+.+.+.+.+.+ +
T Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 517 (555)
T TIGR01194 438 EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL 517 (555)
T ss_pred cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 223456677889999987644321 23579999999999999999999999999999999999999997754 2
Q ss_pred -hcCCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 141 -NYQGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 141 -~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
..++|+|+|||+++.+ +.||++++|++|++++
T Consensus 518 ~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 518 KRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVK 550 (555)
T ss_pred HhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEE
Confidence 2368999999999876 4789999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-28 Score=199.03 Aligned_cols=169 Identities=22% Similarity=0.384 Sum_probs=137.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEec------------CCeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS------------PRLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~------------~~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
|+..|.+-.++ |.+ ++|||++ ++|...|++|.+... .+++||++.......+.+..++.+.+..
T Consensus 53 ~V~~ge~W~I~-G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlS 131 (257)
T COG1119 53 QVNPGEHWAIV-GPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLS 131 (257)
T ss_pred eecCCCcEEEE-CCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeee
Confidence 67788888888 776 5999999 999999999988642 1567899865433234455566665431
Q ss_pred -------hc--CCC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 68 -------LF--NLP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 68 -------~~--~~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.+ ..+ ..++..+++.+|+.+..++ +..+||-||||||.|||||+.+|++|||||||+|||..+++.+
T Consensus 132 g~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~l 210 (257)
T COG1119 132 GFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQL 210 (257)
T ss_pred cccccccccccCCCHHHHHHHHHHHHHcchhhhccC-chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHH
Confidence 12 122 2356778999999987764 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 136 AEAIKNY-----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 136 ~~~l~~~-----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
.+.|.+. +.++|+|||+.+++....++++.+.+|+++.
T Consensus 211 l~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 211 LNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999876 2489999999999999999999999999863
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=236.15 Aligned_cols=176 Identities=21% Similarity=0.246 Sum_probs=142.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccC-------------------------------------------------
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTP------------------------------------------------- 31 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p------------------------------------------------- 31 (211)
.+..|..+.+++.=. ++|||++ |.|++.|
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 466788999994433 5999999 9999998
Q ss_pred -----CcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCCHHHHHHHHHhCCCCCcc-----
Q psy2681 32 -----NKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA----- 89 (211)
Q Consensus 32 -----~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~l~~~gl~~~~----- 89 (211)
++|+|..++ +..||||+|+|. +| +.|+.||+.... ..+.+++.++++..++.+..
T Consensus 1270 ~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--LF-~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~ 1346 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--LF-NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPN 1346 (1466)
T ss_pred cccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 589997653 567999999985 54 679999997542 34567777777777664322
Q ss_pred --cc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhC
Q psy2681 90 --HT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETD 160 (211)
Q Consensus 90 --~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~ 160 (211)
+. .....||||||||++|||||+.+|++||||||||+||+++.+.+.+.|.+. +.|+|+|||.+..+. .|
T Consensus 1347 GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~a 1425 (1466)
T PTZ00265 1347 KYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK-RS 1425 (1466)
T ss_pred ccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHH-hC
Confidence 11 134579999999999999999999999999999999999999999999875 569999999999986 47
Q ss_pred CeEEEEeC----CceeeecCChHHHH
Q psy2681 161 CELWALEK----KNIRKFNGDFDDYR 182 (211)
Q Consensus 161 ~~v~~l~~----g~i~~~~g~~~~~~ 182 (211)
|+|++|++ |+++...|+.+++.
T Consensus 1426 D~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1426 DKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred CEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999 88654468877764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-27 Score=234.80 Aligned_cols=176 Identities=20% Similarity=0.234 Sum_probs=144.9
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|.++.++ |-. ++|||++ +.|++.|++|+|..++ |.+++++||+|. +|. -|+.+|+..
T Consensus 1307 ~~I~~GekiaIV-GrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~--LF~-gTIr~NLdp 1382 (1522)
T TIGR00957 1307 VTIHGGEKVGIV-GRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPV--LFS-GSLRMNLDP 1382 (1522)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCc--ccC-ccHHHHcCc
Confidence 356789999999 554 6999999 9999999999998653 567999999985 565 599999863
Q ss_pred hcCCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~-------~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++++.++++..++.+.. +. .....||||||||++||||++.+|++|||||||++||+++...+.+
T Consensus 1383 ~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~ 1462 (1522)
T TIGR00957 1383 FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS 1462 (1522)
T ss_pred ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 3345677777788777664321 11 1235699999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|++. +.|+|+|+|+++.+.. +|+|++|++|++++ .|+++++.+
T Consensus 1463 ~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE-~G~~~eLl~ 1508 (1522)
T TIGR00957 1463 TIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAE-FGAPSNLLQ 1508 (1522)
T ss_pred HHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99875 5699999999999976 59999999999987 577777654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=215.54 Aligned_cols=149 Identities=30% Similarity=0.368 Sum_probs=122.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
+.+..|.++.+++.-. ++|||++ +.|+++|++|+|..++ +..++|++|++. +| +.|+.+|+...
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~--lF-~~TI~eNI~~g~ 432 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAH--LF-DTTVRDNLRLGR 432 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcc--cc-cccHHHHHhccC
Confidence 3567889999995443 6999999 9999999999998765 357999999985 44 56999998753
Q ss_pred cCCCHHHHHHHHHhCCCCCccc-------c---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~-------~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
...+++++.++++..++.+... . ..-..||||||||++||||++.+|+++|||||||+||+++...+.+.
T Consensus 433 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~ 512 (529)
T TIGR02868 433 PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLED 512 (529)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2346777888888887754222 1 12356999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecCh
Q psy2681 139 IKNY--QGGVILVSHDE 153 (211)
Q Consensus 139 l~~~--~~tiiivsHd~ 153 (211)
+.+. +.|+|+|||++
T Consensus 513 l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 513 LLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEEecCC
Confidence 9876 57999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=181.21 Aligned_cols=169 Identities=20% Similarity=0.272 Sum_probs=134.9
Q ss_pred cccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC--------------------CeEEEEEeCCCCCCCCCC----
Q psy2681 5 CLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP--------------------RLRIGKFDQHSGEHLFPD---- 58 (211)
Q Consensus 5 ~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~--------------------~~~ig~v~q~~~~~l~~~---- 58 (211)
--|+++.+++-- -++|||++ |+|-+.|+.|+|.... +...|++.|+|.+.+-..
T Consensus 30 ~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG 109 (258)
T COG4107 30 YPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAG 109 (258)
T ss_pred cCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccC
Confidence 357778888433 35999999 9999999999996421 346899999986443322
Q ss_pred CCHHHHHHh----hcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 59 DTPCEYLMK----LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 59 ~t~~e~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
-++.|-++. .|+.-+..+..+++++.++...-...+..+||||+||++|||-|.+.|+++++||||.|||+..+..
T Consensus 110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 110 GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHH
Confidence 234444432 2344456677899999997533333678999999999999999999999999999999999999999
Q ss_pred HHHHHHh----cCCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 135 LAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 135 l~~~l~~----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++++++. ++.++++||||+..+.-.++|.++|+.|++++
T Consensus 190 LLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9998865 46799999999999999999999999999875
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-27 Score=232.91 Aligned_cols=162 Identities=23% Similarity=0.318 Sum_probs=131.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEec-C-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS-P-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~-~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-. ++|||++ |+|+++|++|+|..+ . +..|||++|++. +|. .|+.+|+..
T Consensus 407 ~i~~Ge~vaIv-G~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~--LF~-~TI~eNI~~ 482 (1466)
T PTZ00265 407 TLTEGKTYAFV-GESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPL--LFS-NSIKNNIKY 482 (1466)
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEeccccc--chh-ccHHHHHHh
Confidence 45678889999 554 5999999 999999999999873 1 346999999975 665 599999864
Q ss_pred hc----------------------------------------------------------CCCHHHHHHHHHhCCCCCcc
Q psy2681 68 LF----------------------------------------------------------NLPYEKSRRQLGMFGLPSYA 89 (211)
Q Consensus 68 ~~----------------------------------------------------------~~~~~~~~~~l~~~gl~~~~ 89 (211)
.. ....+++.++++.+++.+..
T Consensus 483 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i 562 (1466)
T PTZ00265 483 SLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFV 562 (1466)
T ss_pred cCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHH
Confidence 21 01234566677777765431
Q ss_pred c----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHH
Q psy2681 90 H----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERL 155 (211)
Q Consensus 90 ~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 155 (211)
. ......||||||||++||||++.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+++.
T Consensus 563 ~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 563 SALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST 642 (1466)
T ss_pred HhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 1 1256789999999999999999999999999999999999999999999876 4699999999999
Q ss_pred HHhhCCeEEEEeCC
Q psy2681 156 IRETDCELWALEKK 169 (211)
Q Consensus 156 ~~~~~~~v~~l~~g 169 (211)
+ +.||++++|++|
T Consensus 643 i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 643 I-RYANTIFVLSNR 655 (1466)
T ss_pred H-HhCCEEEEEeCC
Confidence 8 579999999886
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=231.20 Aligned_cols=174 Identities=22% Similarity=0.269 Sum_probs=143.0
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
|.+..|.++.++ |-. ++|||++ +.|++. .+|+|..++ +.+++|+||+|. +|. -|+.+|+.-
T Consensus 1240 ~~I~~GekvaIv-GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~--LF~-GTIR~NLdp 1314 (1490)
T TIGR01271 1240 FSVEGGQRVGLL-GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVF--IFS-GTFRKNLDP 1314 (1490)
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCc--cCc-cCHHHHhCc
Confidence 467889999999 553 6999999 999986 799997653 567999999985 555 599999954
Q ss_pred hcCCCHHHHHHHHHhCCCCCccccC------C----CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSYAHTI------P----IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~~~~~------~----~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++++.++++.+++.+...+. . -..||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 1315 ~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~ 1394 (1490)
T TIGR01271 1315 YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK 1394 (1490)
T ss_pred ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3344677888888888875432211 1 23699999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|||+|||.++.+.. +|+|++|++|+++++ |++.++.
T Consensus 1395 ~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~-g~p~~Ll 1439 (1490)
T TIGR01271 1395 TLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY-DSIQKLL 1439 (1490)
T ss_pred HHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-CCHHHHH
Confidence 99875 5699999999999876 799999999999874 6666554
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=230.58 Aligned_cols=171 Identities=19% Similarity=0.247 Sum_probs=137.9
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCccc---CCcceEEecC-------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELT---PNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~---p~~G~i~~~~-------~~~ig~v~q~~~~~l~~~~t~~e~~~~~--- 68 (211)
+..|..+.+++.-. ++|||++ |+|..+ |++|+|..++ ++.+||++|++. +++.+|+.|++...
T Consensus 786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~--~~~~~Tv~E~L~~~a~l 863 (1394)
T TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDL--HLPTSTVRESLRFSAYL 863 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeeccccc--CCCCCCHHHHHHHHHHh
Confidence 45667788884333 5999999 999987 7889998654 346899999864 67889999988632
Q ss_pred c---CCCH----HHHHHHHHhCCCCCccccCCCC----CCChHHHHHHHHHHHHhcCCC-eEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F---NLPY----EKSRRQLGMFGLPSYAHTIPIR----DLSGGQKARVALAELTLNNPD-ILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~---~~~~----~~~~~~l~~~gl~~~~~~~~~~----~LSgG~kqRv~iaral~~~p~-lllLDEPt~gLD~~~~~~l~ 136 (211)
. ..+. +.++++++.+|+.+..++ .++ .|||||||||+||++|+.+|+ +|||||||+|||+.+...+.
T Consensus 864 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~-~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 864 RQPKSVSKSEKMEYVEEVIKLLEMESYADA-VVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCChhhCCC-eeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 1 1122 346789999999877664 565 799999999999999999997 99999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHH-HHhhCCeEEEEeCC-ceeeecCCh
Q psy2681 137 EAIKNY---QGGVILVSHDERL-IRETDCELWALEKK-NIRKFNGDF 178 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~-~~~~~~~v~~l~~g-~i~~~~g~~ 178 (211)
+.|+++ +.|||++||+++. +.+.+|++++|.+| +++ +.|+.
T Consensus 943 ~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~ 988 (1394)
T TIGR00956 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL 988 (1394)
T ss_pred HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence 999875 5699999999986 45678999999998 765 44554
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-26 Score=184.09 Aligned_cols=179 Identities=22% Similarity=0.311 Sum_probs=147.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHH---hhcCCCH----
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPY---- 73 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~---~~~~~~~---- 73 (211)
+..|.++.+| |.+ ++|||+| |+|.++|++|+|..++ +++++..-. ..+.+++|..+|+. ...+...
T Consensus 50 i~~Ge~vGii-G~NGaGKSTLlkliaGi~~Pt~G~v~v~G--~v~~li~lg-~Gf~pelTGreNi~l~~~~~G~~~~ei~ 125 (249)
T COG1134 50 IYKGERVGII-GHNGAGKSTLLKLIAGIYKPTSGKVKVTG--KVAPLIELG-AGFDPELTGRENIYLRGLILGLTRKEID 125 (249)
T ss_pred EeCCCEEEEE-CCCCCcHHHHHHHHhCccCCCCceEEEcc--eEehhhhcc-cCCCcccchHHHHHHHHHHhCccHHHHH
Confidence 5678999999 776 5999999 9999999999998865 455444332 34678899999875 2345544
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
+.++++.+.-+|.++.+. |++.||.||+-|++++.|...+|++||+||-.+--|+.-++.-.+.+.++ +.|||+||
T Consensus 126 ~~~~eIieFaELG~fi~~-PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VS 204 (249)
T COG1134 126 EKVDEIIEFAELGDFIDQ-PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVS 204 (249)
T ss_pred HHHHHHHHHHHHHHHhhC-chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 345678888888888875 99999999999999999999999999999999999999888877777665 57999999
Q ss_pred cChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHHH
Q psy2681 151 HDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTS 188 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~~ 188 (211)
||+..+.++||++++|++|++. +.|+.++..+.+.+.
T Consensus 205 Hd~~~I~~~Cd~~i~l~~G~i~-~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 205 HDLGAIKQYCDRAIWLEHGQIR-MEGSPEEVIPAYEED 241 (249)
T ss_pred CCHHHHHHhcCeeEEEeCCEEE-EcCCHHHHHHHHHHh
Confidence 9999999999999999999996 468887765544333
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=228.24 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=132.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
++..|..+.+++.-. ++|||++ |+|+++|++|+|..++ .++|++|++. +++ .|+.+|+.........+..+++
T Consensus 448 ~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~--l~~-~Ti~eNI~~g~~~~~~~~~~~~ 522 (1490)
T TIGR01271 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSW--IMP-GTIKDNIIFGLSYDEYRYTSVI 522 (1490)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCc--cCC-ccHHHHHHhccccchHHHHHHH
Confidence 345677788885553 5999999 9999999999998765 6999999975 555 5999998743222222233333
Q ss_pred HhCCCCC-----------ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHhc--CCeE
Q psy2681 81 GMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IKNY--QGGV 146 (211)
Q Consensus 81 ~~~gl~~-----------~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~--~~ti 146 (211)
+..++.+ .... +...||||||||++||||++.+|+++||||||++||+.+...+.+. +... +.|+
T Consensus 523 ~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tv 601 (1490)
T TIGR01271 523 KACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTR 601 (1490)
T ss_pred HHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeE
Confidence 3222211 1222 4678999999999999999999999999999999999999999974 5443 5799
Q ss_pred EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+|||+++.+.. ||++++|++|+++. .|+++++.
T Consensus 602 ilvtH~~~~~~~-ad~ii~l~~g~i~~-~g~~~~l~ 635 (1490)
T TIGR01271 602 ILVTSKLEHLKK-ADKILLLHEGVCYF-YGTFSELQ 635 (1490)
T ss_pred EEEeCChHHHHh-CCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999875 89999999999864 67776654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=228.57 Aligned_cols=172 Identities=20% Similarity=0.222 Sum_probs=135.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
++..|..+.+++.-. ++|||++ +.|+++|++|+|..++ .++|++|++. ++ +.|+.+|+......+.++..+++
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~--l~-~~Ti~eNI~~g~~~~~~~~~~~~ 734 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAW--IQ-NDSLRENILFGKALNEKYYQQVL 734 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCcc--cc-CCcHHHHhhcCCccCHHHHHHHH
Confidence 456788888885554 5999999 9999999999998765 6999999975 44 57999998743333334334333
Q ss_pred HhCCCC-----------CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh-----cCC
Q psy2681 81 GMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-----YQG 144 (211)
Q Consensus 81 ~~~gl~-----------~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-----~~~ 144 (211)
+..++. ..... +..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+ .++
T Consensus 735 ~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~ 813 (1522)
T TIGR00957 735 EACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNK 813 (1522)
T ss_pred HHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCC
Confidence 332221 12233 5678999999999999999999999999999999999999999998853 146
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+|+|||+++.+.. +|++++|++|+++. .|+++++.
T Consensus 814 tvIlvTH~~~~l~~-~D~ii~l~~G~i~~-~g~~~~l~ 849 (1522)
T TIGR00957 814 TRILVTHGISYLPQ-VDVIIVMSGGKISE-MGSYQELL 849 (1522)
T ss_pred EEEEEeCChhhhhh-CCEEEEecCCeEEe-eCCHHHHH
Confidence 99999999999876 89999999999864 67776654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=180.94 Aligned_cols=175 Identities=23% Similarity=0.326 Sum_probs=148.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
++--|+...+| |=+ ++||++. |+|..+|+.|++.... +..||--||.|. .|.++||++|+.
T Consensus 27 ~v~~Gelr~lI-GpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~Pt--Vfe~ltV~eNLe 103 (249)
T COG4674 27 SVDPGELRVLI-GPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPT--VFENLTVRENLE 103 (249)
T ss_pred EecCCeEEEEE-CCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCe--ehhhccHHHHHH
Confidence 45567778888 655 5999999 9999999999997543 346888899886 899999999985
Q ss_pred hhcC------------C---CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q psy2681 67 KLFN------------L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 131 (211)
Q Consensus 67 ~~~~------------~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~ 131 (211)
...+ . .+.+++++|...||.+..+. ....||.||||++.|++.++++|++|++|||++|+--..
T Consensus 104 lA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~E 182 (249)
T COG4674 104 LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182 (249)
T ss_pred HHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHH
Confidence 2211 1 13467889999999988775 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 132 IDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 132 ~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.....++|+.+. .+|++|.|||.|+..++++|-+|+.|.+.. .|+.+++.
T Consensus 183 t~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~-EGsld~v~ 234 (249)
T COG4674 183 TEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA-EGSLDEVQ 234 (249)
T ss_pred HHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceee-cccHHHhh
Confidence 999999999874 499999999999999999999999999864 78877664
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=179.30 Aligned_cols=135 Identities=24% Similarity=0.280 Sum_probs=107.6
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCe------EEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRL------RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK 75 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~------~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~ 75 (211)
+..|.++.+++--. ++|||++ +. +++|++...... .++|++|
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q-------------------------- 67 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ-------------------------- 67 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH--------------------------
Confidence 45678888884443 5999999 74 368888654221 1222222
Q ss_pred HHHHHHhCCCCCc-cccCCCCCCChHHHHHHHHHHHHhcC--CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 76 SRRQLGMFGLPSY-AHTIPIRDLSGGQKARVALAELTLNN--PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 76 ~~~~l~~~gl~~~-~~~~~~~~LSgG~kqRv~iaral~~~--p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
.++++.+++... .+ +++.+||||||||++||||++.+ |+++||||||++||+.++..+.+.|+++ +.|||++
T Consensus 68 -~~~l~~~~L~~~~~~-~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIiv 145 (176)
T cd03238 68 -LQFLIDVGLGYLTLG-QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145 (176)
T ss_pred -HHHHHHcCCCccccC-CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 357888998753 44 47899999999999999999999 9999999999999999999999998764 6799999
Q ss_pred ecChHHHHhhCCeEEEEeCCce
Q psy2681 150 SHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i 171 (211)
||+++++ ..||++++|.+|..
T Consensus 146 SH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 146 EHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred eCCHHHH-HhCCEEEEECCCCC
Confidence 9999997 57999999988754
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=225.11 Aligned_cols=174 Identities=20% Similarity=0.155 Sum_probs=138.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcc----cCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGEL----TPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~----~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..|..+.++ |-. ++|||+| |+|.. +|++|+|..++ +..++|++|++. +++.+|+.|++.
T Consensus 84 i~~Ge~~aIl-G~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~--~~~~lTV~E~l~ 160 (1394)
T TIGR00956 84 IKPGELTVVL-GRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV--HFPHLTVGETLD 160 (1394)
T ss_pred EECCEEEEEE-CCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc--cCCCCCHHHHHH
Confidence 3456667777 554 5999999 99986 57899998653 235999999864 788999999875
Q ss_pred hh---c-------CCCHH----H-HHHHHHhCCCCCcccc----CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 67 KL---F-------NLPYE----K-SRRQLGMFGLPSYAHT----IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 67 ~~---~-------~~~~~----~-~~~~l~~~gl~~~~~~----~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
.. . +...+ + .+.+++.+||.+..++ ..++.|||||||||+||++|+.+|++++|||||+||
T Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgL 240 (1394)
T TIGR00956 161 FAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGL 240 (1394)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 32 1 11221 2 2457899999876553 135789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc----CCeEEEEecCh-HHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 128 DIESIDALAEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 128 D~~~~~~l~~~l~~~----~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+.++..+.+.|+++ +.|||+++|+. +.+.+.+|++++|.+|+++ +.|+.++.
T Consensus 241 D~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv-~~G~~~~~ 298 (1394)
T TIGR00956 241 DSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKA 298 (1394)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE-EECCHHHH
Confidence 999999999999764 56999999996 7888999999999999986 46776554
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=225.92 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=136.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccC--CcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTP--NKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p--~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
+..|..+.+++.-. ++|||++ |+|..++ .+|+|..++ ++.+||++|++. +++.+|+.|++....
T Consensus 903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~l 980 (1470)
T PLN03140 903 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI--HSPQVTVRESLIYSAFL 980 (1470)
T ss_pred EECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHh
Confidence 34566777773333 5999999 9998763 689987653 245899999864 788899999885321
Q ss_pred ----CCCH----HHHHHHHHhCCCCCccccCCC-----CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 70 ----NLPY----EKSRRQLGMFGLPSYAHTIPI-----RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 70 ----~~~~----~~~~~~l~~~gl~~~~~~~~~-----~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
..+. +.++++++.+||.+..+. .+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.
T Consensus 981 r~~~~~~~~~~~~~v~~vl~~lgL~~~~~~-~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140 981 RLPKEVSKEEKMMFVDEVMELVELDNLKDA-IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCChhHhCC-ccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 1122 236789999999876654 44 589999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChH-HHHhhCCeEEEEeC-CceeeecCCh
Q psy2681 137 EAIKNY---QGGVILVSHDER-LIRETDCELWALEK-KNIRKFNGDF 178 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~-~~~~~~~~v~~l~~-g~i~~~~g~~ 178 (211)
+.|+++ +.|||++||+++ .+.+.+|++++|.+ |+++ +.|+.
T Consensus 1060 ~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~G~~ 1105 (1470)
T PLN03140 1060 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YSGPL 1105 (1470)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EECCc
Confidence 999875 579999999998 46788999999997 6665 45654
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=176.31 Aligned_cols=173 Identities=21% Similarity=0.219 Sum_probs=142.7
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
+.|--+++|+... ++|||.| ++|.++|++|+|..+. .+.|-++||+|+..+.|.+++.+.+....
T Consensus 37 ~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l 116 (267)
T COG4167 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL 116 (267)
T ss_pred cCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh
Confidence 5677789995443 5999999 9999999999998653 35789999999877888887766553211
Q ss_pred --CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+. .+++.+-|.++||-..-.+.++..||.||||||++||||+.+|+++|.||..++||...+.++.+++.++
T Consensus 117 ~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 117 NTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred cccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 222 2456678999998554444578999999999999999999999999999999999999999999887654
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCC
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 177 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~ 177 (211)
|.+.|+|+.++-.+..++|.|+||+.|+++++..+
T Consensus 197 ek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 197 EKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 67999999999999999999999999999885433
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-26 Score=206.31 Aligned_cols=174 Identities=26% Similarity=0.326 Sum_probs=136.7
Q ss_pred ccccCeeeeecCC--CCcccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGL--RNPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~--~~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..|...+++ |- .++||+.+ +-.++.|++|+|..++ +++||+|.|+|- +| .-|+.||+....
T Consensus 491 i~pGe~vALV-GPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv--LF-s~sI~eNI~YG~ 566 (716)
T KOG0058|consen 491 IRPGEVVALV-GPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPV--LF-SGSIRENIAYGL 566 (716)
T ss_pred eCCCCEEEEE-CCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccce--ee-cccHHHHHhcCC
Confidence 3467788888 55 36999999 9999999999998653 568999999985 44 468899997432
Q ss_pred -CCCHHHHHHHHHhCC-------CCCcccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFG-------LPSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~g-------l~~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+.+.+++..+.++.+ +++-.+. .+-.+||||||||+||||||+.+|.+|||||.||+||.++...+.+.
T Consensus 567 ~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 567 DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEA 646 (716)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHH
Confidence 334555544433322 2222221 14468999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.+. +.|||+|.|.+..+++ +|+|+++++|++++ .|+.+++.+
T Consensus 647 L~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E-~G~h~eLl~ 691 (716)
T KOG0058|consen 647 LDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVE-MGTHDELLS 691 (716)
T ss_pred HHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEe-cccHHHHhh
Confidence 9765 5799999999999975 59999999999976 677776654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-26 Score=226.14 Aligned_cols=174 Identities=22% Similarity=0.278 Sum_probs=137.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
++..|.++.+++.-. ++|||++ |.|.++|++|.+.. .+..++|++|+|. ++ +.|+.+|+......+.++..+++
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~--Lf-~gTIreNI~fg~~~~~e~~~~vl 714 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSW--IF-NATVRENILFGSDFESERYWRAI 714 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCccc--cc-cccHHHHhhcCCccCHHHHHHHH
Confidence 456788888995554 5999999 99999999987643 3457999999985 44 56999999755445667777777
Q ss_pred HhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHhc--CCeEE
Q psy2681 81 GMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IKNY--QGGVI 147 (211)
Q Consensus 81 ~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~--~~tii 147 (211)
+..++.+.... .....||||||||++||||+..+|+++|||||||+||+.+.+.+.+. +... ++|+|
T Consensus 715 ~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~I 794 (1495)
T PLN03232 715 DVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRV 794 (1495)
T ss_pred HHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEE
Confidence 76665432211 12356999999999999999999999999999999999998877654 4432 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+|||+++.+. .+|+|++|++|+++. .|+++++.
T Consensus 795 lvTH~~~~l~-~aD~Ii~L~~G~i~~-~Gt~~eL~ 827 (1495)
T PLN03232 795 LVTNQLHFLP-LMDRIILVSEGMIKE-EGTFAELS 827 (1495)
T ss_pred EEECChhhHH-hCCEEEEEeCCEEEE-ecCHHHHH
Confidence 9999999875 579999999999975 67877654
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-26 Score=182.43 Aligned_cols=167 Identities=23% Similarity=0.242 Sum_probs=133.2
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc---
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--- 69 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~--- 69 (211)
.+.=+-+|+... ++|||++ ++|.+.|++|+|.... ...++-|||+|.....+.+|+.||+....
T Consensus 31 ~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg 110 (263)
T COG1101 31 EGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRG 110 (263)
T ss_pred CCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcC
Confidence 344456774443 5999999 9999999999997643 12467789999877889999999986321
Q ss_pred ---CCC-------HHHHHHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 ---NLP-------YEKSRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 ---~~~-------~~~~~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.. .+...+.+..+ ||+..+.. ++.-|||||||-++++.|.+++|++|+|||-|++|||.....+++
T Consensus 111 ~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~-~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~ 189 (263)
T COG1101 111 KKRGLSSALNERRRSSFRERLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME 189 (263)
T ss_pred cccccchhhhHHHHHHHHHHHhhcccchhhhhcC-hhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHH
Confidence 111 12234455555 45666665 789999999999999999999999999999999999999988876
Q ss_pred HH----HhcCCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 138 AI----KNYQGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 138 ~l----~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
.= .+.+.|.+||||+++.+..+.+|.++|++|+|+.
T Consensus 190 lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 190 LTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 54 4557799999999999999999999999999974
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=223.88 Aligned_cols=171 Identities=20% Similarity=0.251 Sum_probs=133.1
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHH----
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR---- 77 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~---- 77 (211)
+..|..+.+++.-. ++|||++ |+|.++|++|+|... ..++|++|++. ++ +.|+.+|+........+...
T Consensus 683 i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~--l~-~~Tv~enI~~~~~~~~~~~~~~~~ 757 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAW--IM-NATVRGNILFFDEEDAARLADAVR 757 (1560)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCc--cC-CCcHHHHHHcCChhhHHHHHHHHH
Confidence 45677788884444 4899999 999999999999763 47999999975 44 56999998643222222222
Q ss_pred -----HHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-H-hc-CCeEE
Q psy2681 78 -----RQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-K-NY-QGGVI 147 (211)
Q Consensus 78 -----~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~-~~-~~tii 147 (211)
+.++.+ |+...... +..+||||||||++||||++.+|+++||||||++||+.+...+.+.+ . .. ++|+|
T Consensus 758 ~~~l~~~l~~l~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvI 836 (1560)
T PTZ00243 758 VSQLEADLAQLGGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRV 836 (1560)
T ss_pred HhhhHHHHHHhhccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 234444 55544444 67899999999999999999999999999999999999988887643 2 22 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++||+++.+. .||++++|++|++. ..|+++++.
T Consensus 837 lvTH~~~~~~-~ad~ii~l~~G~i~-~~G~~~~l~ 869 (1560)
T PTZ00243 837 LATHQVHVVP-RADYVVALGDGRVE-FSGSSADFM 869 (1560)
T ss_pred EEeCCHHHHH-hCCEEEEEECCEEE-EecCHHHHH
Confidence 9999999985 68999999999986 468877764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=225.82 Aligned_cols=173 Identities=21% Similarity=0.291 Sum_probs=138.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCc-ceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNK-GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 79 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~-G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~ 79 (211)
++..|..+.+++.-. ++|||++ |.|.++|++ |+|.. +..++|++|+|. ++ +.|+.+|+......+.++..++
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--~~~Iayv~Q~p~--Lf-ngTIreNI~fg~~~d~e~y~~v 713 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--RGTVAYVPQVSW--IF-NATVRDNILFGSPFDPERYERA 713 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--cCeEEEEcCccc--cC-CCCHHHHHhCCCcccHHHHHHH
Confidence 456788899996664 5999999 999999999 89975 457999999985 44 5799999976544556677777
Q ss_pred HHhCCCCCccc-------c---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HHHhc--CCeE
Q psy2681 80 LGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKNY--QGGV 146 (211)
Q Consensus 80 l~~~gl~~~~~-------~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~--~~ti 146 (211)
++..++.+... . .....||||||||++||||+..+|+++|||||||+||+.+.+.+.+ .+... ++|+
T Consensus 714 l~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTv 793 (1622)
T PLN03130 714 IDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTR 793 (1622)
T ss_pred HHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEE
Confidence 77666543211 1 1345699999999999999999999999999999999998887754 45543 5799
Q ss_pred EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+|||++..+. .+|+|++|++|+++. .|+++++.
T Consensus 794 IlVTH~l~~l~-~aD~Ii~L~~G~i~e-~Gt~~eL~ 827 (1622)
T PLN03130 794 VLVTNQLHFLS-QVDRIILVHEGMIKE-EGTYEELS 827 (1622)
T ss_pred EEEECCHhHHH-hCCEEEEEeCCEEEE-eCCHHHHH
Confidence 99999998876 579999999999975 68877764
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=215.30 Aligned_cols=172 Identities=26% Similarity=0.376 Sum_probs=144.7
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH---hh
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM---KL 68 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~---~~ 68 (211)
++-..+. |.+ ++||+++ ++|..+|++|++...+ ++.+||.||... +.+.+|..|.+. ..
T Consensus 591 gecfgLL-G~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~--l~~~lT~rEhL~~~arl 667 (885)
T KOG0059|consen 591 GECFGLL-GVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDA--LWEELTGREHLEFYARL 667 (885)
T ss_pred CceEEEe-cCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhh--hhhhccHHHHHHHHHHH
Confidence 3444544 766 5999999 9999999999997532 345999999864 889999988764 33
Q ss_pred cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 69 FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 69 ~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.+.+. +.++..++.+||.++.++ +++.||||+|+|+.+|.|++.+|++++|||||+|+||.+++.+++++.+.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~-~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k 746 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANK-QVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK 746 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhcc-chhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 45443 346778999999998886 79999999999999999999999999999999999999999999999876
Q ss_pred -CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 -QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 -~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++||++||.+++++..|+|+.+|-+|++.. -|+..+++.
T Consensus 747 ~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c-iGs~q~LKs 787 (885)
T KOG0059|consen 747 NGKAIILTSHSMEEAEALCTRTAIMVIGQLRC-IGSPQELKS 787 (885)
T ss_pred cCCEEEEEcCCHHHHHHHhhhhheeecCeeEE-ecChHHHHh
Confidence 2399999999999999999999999999975 477766654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=221.95 Aligned_cols=173 Identities=21% Similarity=0.231 Sum_probs=137.6
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCC---cceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPN---KGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~---~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
..|....++ |-. ++|||++ |+|.++|+ +|+|..++ ++.++|++|++. +++.+|+.|++...
T Consensus 189 ~~Ge~~~ll-GpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~--~~~~lTV~EtL~f~a~ 265 (1470)
T PLN03140 189 KPSRMTLLL-GPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDV--HVGVMTVKETLDFSAR 265 (1470)
T ss_pred eCCeEEEEE-cCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEeccccc--CCCcCcHHHHHHHHHH
Confidence 345555666 554 5999999 99999998 99998653 356999999864 78899999987531
Q ss_pred -cC----------CC-HH---------------------------HHHHHHHhCCCCCccc----cCCCCCCChHHHHHH
Q psy2681 69 -FN----------LP-YE---------------------------KSRRQLGMFGLPSYAH----TIPIRDLSGGQKARV 105 (211)
Q Consensus 69 -~~----------~~-~~---------------------------~~~~~l~~~gl~~~~~----~~~~~~LSgG~kqRv 105 (211)
.+ .. .+ .++.+++.+||++..+ +..++.|||||||||
T Consensus 266 ~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRV 345 (1470)
T PLN03140 266 CQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRV 345 (1470)
T ss_pred hcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceee
Confidence 11 00 00 1245788999976432 235789999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecCh-HHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 106 ~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+||++++.+|++++|||||+|||+.+...+.+.|++. +.|+|+++|+. ..+..++|++++|.+|+++ +.|+.++
T Consensus 346 sia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv-y~G~~~~ 424 (1470)
T PLN03140 346 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV-YQGPRDH 424 (1470)
T ss_pred eehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE-EeCCHHH
Confidence 9999999999999999999999999999999999865 56999999996 6888999999999999986 4677655
Q ss_pred H
Q psy2681 181 Y 181 (211)
Q Consensus 181 ~ 181 (211)
.
T Consensus 425 ~ 425 (1470)
T PLN03140 425 I 425 (1470)
T ss_pred H
Confidence 4
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=171.78 Aligned_cols=120 Identities=35% Similarity=0.484 Sum_probs=100.5
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC-----------eEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR-----------LRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~-----------~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
+..+....+++.-. ++|||++ ++|.++|++|++..+.. ..++|++|
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------------------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------------------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee---------------------
Confidence 45566777774433 5999999 99999999999976542 11222222
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
||+||+||++||++++.+|++++|||||+|||+.++..+.+.+.++ +.|++
T Consensus 81 --------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii 134 (157)
T cd00267 81 --------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVI 134 (157)
T ss_pred --------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999999999999999999999865 36999
Q ss_pred EEecChHHHHhhCCeEEEEeCCc
Q psy2681 148 LVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
++||+++++..+|++++++.+|+
T Consensus 135 ~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 135 IVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999998874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=195.90 Aligned_cols=176 Identities=26% Similarity=0.346 Sum_probs=136.2
Q ss_pred cccccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
++.+|.-+.+|+-= -++|||.| +.|..+|.+|.|+.+. .++|||+||+-. +|+ -|+.||+.++.
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe--LF~-GTIaeNIaRf~ 434 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE--LFD-GTIAENIARFG 434 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce--ecC-CcHHHHHHhcc
Confidence 45678888999333 36999999 9999999999998643 458999999975 665 58999998776
Q ss_pred -CCCHHHHHHHHHhCCC-------CCcccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGL-------PSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl-------~~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+.+.+++-+..+.-|. +.-.+. .--..||||||||+++||||..+|.+++||||-++||.+....+.+.
T Consensus 435 ~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 435 EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 3444444333322222 111121 02357999999999999999999999999999999999999999998
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|.+. +.|+|+|||.+..+. .+|++++|++|++..| |+.++...
T Consensus 515 i~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~F-G~r~eVLa 560 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAF-GPREEVLA 560 (580)
T ss_pred HHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhc-CCHHHHHH
Confidence 8654 679999999999886 5699999999999765 67666544
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=177.04 Aligned_cols=95 Identities=27% Similarity=0.310 Sum_probs=84.1
Q ss_pred HHHHHhCCCCCc-cccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 77 RRQLGMFGLPSY-AHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 77 ~~~l~~~gl~~~-~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
.+.++.+++... .+ +++.+||||||||++||||++.+| +++||||||+|||+.++..+.+.|++. +.|||++|
T Consensus 118 ~~~l~~~~l~~~~~~-~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~it 196 (226)
T cd03270 118 LGFLVDVGLGYLTLS-RSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVE 196 (226)
T ss_pred HHHHHHCCCCccccc-CccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 568999999763 44 478999999999999999999998 599999999999999999999998764 56999999
Q ss_pred cChHHHHhhCCeEEEE------eCCceee
Q psy2681 151 HDERLIRETDCELWAL------EKKNIRK 173 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l------~~g~i~~ 173 (211)
||++++ .+||++++| ++|+++.
T Consensus 197 H~~~~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 197 HDEDTI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred eCHHHH-HhCCEEEEeCCCccccCCEEEe
Confidence 999987 589999999 7787764
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-26 Score=199.54 Aligned_cols=173 Identities=23% Similarity=0.385 Sum_probs=128.8
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCe--EEE-EEeCCCCCCCCCCCCHHHHHHhh----cCCCHHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRL--RIG-KFDQHSGEHLFPDDTPCEYLMKL----FNLPYEKS 76 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~--~ig-~v~q~~~~~l~~~~t~~e~~~~~----~~~~~~~~ 76 (211)
|+|-.+. |-+ ++|||+| |+- |.|...+.. -.| +++-.. ..+..+....+++..- .....+.+
T Consensus 106 GrRYGLv-GrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei 177 (582)
T KOG0062|consen 106 GRRYGLV-GRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEI 177 (582)
T ss_pred cccccee-CCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHh-hhhhccHHHHHHHHhhhhhhccchHHHH
Confidence 5566666 554 5999999 864 333322110 011 111110 1133444444555422 11133444
Q ss_pred HH-HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH
Q psy2681 77 RR-QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155 (211)
Q Consensus 77 ~~-~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~ 155 (211)
.. +|.-+|+++....+++++||||-|.|++|||||..+||+||||||||+||..+..|+.+.|..++.|+|+||||..|
T Consensus 178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~F 257 (582)
T KOG0062|consen 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNF 257 (582)
T ss_pred HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHH
Confidence 44 89999998876677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCeEEEEeCCceeeecCChHHHHHHHHH
Q psy2681 156 IRETDCELWALEKKNIRKFNGDFDDYREKLLT 187 (211)
Q Consensus 156 ~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~ 187 (211)
+..+|..|+.+++-++-.|.|+++.+.+..-+
T Consensus 258 Ln~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E 289 (582)
T KOG0062|consen 258 LNTVCTDIIHLENLKLDYYKGNYSQFVKTKPE 289 (582)
T ss_pred HHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHH
Confidence 99999999999999998899999987654333
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=208.50 Aligned_cols=173 Identities=26% Similarity=0.331 Sum_probs=140.2
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
+.+|.-++++ |-- ++||.+. +-..+.|++|.|..++ |+++|.|.|+|. || +.|+.||+...
T Consensus 1013 i~~GqTvALV-G~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~--LF-~~TIrENI~YG~ 1088 (1228)
T KOG0055|consen 1013 IRAGQTVALV-GPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV--LF-NGTIRENIAYGS 1088 (1228)
T ss_pred ecCCCEEEEE-CCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch--hh-cccHHHHHhccC
Confidence 4567778888 553 5999999 8999999999998643 568999999985 44 57899999754
Q ss_pred cCCCHHHHHHHHHhCCC-------C----CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 FNLPYEKSRRQLGMFGL-------P----SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl-------~----~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
...+.+++.++++..+. + ..... +-.+||||||||++||||++.+|++|||||.||+||.++.+.+.+
T Consensus 1089 ~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQe 1167 (1228)
T KOG0055|consen 1089 EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQE 1167 (1228)
T ss_pred CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHH
Confidence 22456666666655433 2 22222 456899999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|.+. +.|.|+|.|.+..+.. ||.|+|+++|++++ .|+.+++..
T Consensus 1168 ALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1168 ALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred HHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEe-cccHHHHHh
Confidence 99875 6799999999999964 69999999999986 788877654
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-24 Score=167.60 Aligned_cols=144 Identities=27% Similarity=0.342 Sum_probs=117.5
Q ss_pred eecCCC--Ccccccc-ccCcccCCcceEEecCC----------eEEEEEeCCCCCCCCCCCCHHHHHHhhc---C-CCHH
Q psy2681 12 VLQGLR--NPLSFIK-PKGELTPNKGELRKSPR----------LRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LPYE 74 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~-~~~~ 74 (211)
.|.|-+ ++|||+| ++|+..|++|+|.++.. ..+-|+--.+. +=+.+|++||+.++. + .+..
T Consensus 32 ~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~g--iK~eLTa~ENL~F~~~~~~~~~~~ 109 (209)
T COG4133 32 QITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPG--IKTELTALENLHFWQRFHGSGNAA 109 (209)
T ss_pred EEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhcccc--ccchhhHHHHHHHHHHHhCCCchh
Confidence 344665 5999999 99999999999987531 12334433333 567899999987543 3 3456
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEec
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 151 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsH 151 (211)
.+.++++.|||.+..+. |+.+||.|||+||+|||-++..+++.||||||++||..+...+..++... ++-||++||
T Consensus 110 ~i~~Al~~vgL~g~~dl-p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 110 TIWEALAQVGLAGLEDL-PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred hHHHHHHHcCccccccc-chhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 78899999999988875 99999999999999999999999999999999999999999999999765 568999999
Q ss_pred ChHHHHh
Q psy2681 152 DERLIRE 158 (211)
Q Consensus 152 d~~~~~~ 158 (211)
+..-+..
T Consensus 189 q~l~~~~ 195 (209)
T COG4133 189 QPLPIAS 195 (209)
T ss_pred CccCCCc
Confidence 8876643
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=168.09 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=108.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcc---------eEEec--------CCeEEEEEeCCCCCCCCCCCCHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKG---------ELRKS--------PRLRIGKFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G---------~i~~~--------~~~~ig~v~q~~~~~l~~~~t~~e 63 (211)
+..+ ...++ |-+ ++|||++ ++|++.|..| ++... ....++|+||++... +.
T Consensus 20 ~~~g-~~~i~-G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-~~------ 90 (197)
T cd03278 20 FPPG-LTAIV-GPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-YS------ 90 (197)
T ss_pred cCCC-cEEEE-CCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-ee------
Confidence 3344 34444 665 5999999 9988866533 23211 135799999998522 11
Q ss_pred HHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 64 YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 64 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
....+++.++++. .+..+ +++.+||||||||++||++++ .+|+++||||||++||+.++..+.+.|
T Consensus 91 ------~~~~~~~~~~l~~---~~~~~-~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l 160 (197)
T cd03278 91 ------IISQGDVSEIIEA---PGKKV-QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLL 160 (197)
T ss_pred ------EEehhhHHHHHhC---CCccc-cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0013456667766 33344 478999999999999999997 467999999999999999999999999
Q ss_pred Hhc--CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 140 KNY--QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 140 ~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
++. +.|||++||+++++ ..||+++.+...
T Consensus 161 ~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~~ 191 (197)
T cd03278 161 KEFSKETQFIVITHRKGTM-EAADRLYGVTMQ 191 (197)
T ss_pred HHhccCCEEEEEECCHHHH-hhcceEEEEEec
Confidence 876 46999999999987 579999887643
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=192.79 Aligned_cols=173 Identities=27% Similarity=0.299 Sum_probs=140.6
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccC---CcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTP---NKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p---~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~- 69 (211)
.+.|..+++++.=. ++|||++ ++|.... .+|+|..++ ++..|||.|+.. +++.+||.|.+....
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~--l~~~LTV~EtL~f~A~ 130 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDV--LLPTLTVRETLRFSAL 130 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccc--ccccccHHHHHHHHHH
Confidence 34567778884443 5999999 9998864 789998776 346899999864 899999999875321
Q ss_pred ----C-CC----HHHHHHHHHhCCCCCccccCCCC-----CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 70 ----N-LP----YEKSRRQLGMFGLPSYAHTIPIR-----DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 70 ----~-~~----~~~~~~~l~~~gl~~~~~~~~~~-----~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
. .+ +++++++++.+|+....++ .++ .+|||||+||+||.-++++|.+|+|||||+|||..+...+
T Consensus 131 lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t-~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~v 209 (613)
T KOG0061|consen 131 LRLPSSLSKEEKRERVEEVISELGLEKCADT-LIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQV 209 (613)
T ss_pred hcCCCCCCHHHHHHHHHHHHHHcCChhhccc-eecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHH
Confidence 1 11 3457889999999866665 564 5999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecCh-HHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 136 AEAIKNY---QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
.+.|+++ |+|||++-|.+ ..+.+..|++++|.+|+++ |.|+..+
T Consensus 210 v~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v-y~G~~~~ 257 (613)
T KOG0061|consen 210 VQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV-YSGSPRE 257 (613)
T ss_pred HHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE-EecCHHH
Confidence 9999876 67999999997 4566778999999999875 5676644
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-23 Score=198.65 Aligned_cols=173 Identities=21% Similarity=0.274 Sum_probs=142.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
+-.|..+++++-.. ++|+|+. |.|.++..+|++..++ .++|++|.|. ..+-|+.||+......++++.+++++
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g--siaYv~Q~pW---I~ngTvreNILFG~~~d~~rY~~Vi~ 618 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--SVAYVPQQPW---IQNGTVRENILFGSPYDEERYDKVIK 618 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC--eEEEeccccH---hhCCcHHHhhhcCccccHHHHHHHHH
Confidence 34577788886554 5999999 9999999999998876 4999999985 45679999998777777888888777
Q ss_pred hCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHhc--CCeEEE
Q psy2681 82 MFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IKNY--QGGVIL 148 (211)
Q Consensus 82 ~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~--~~tiii 148 (211)
...|..+... .+--+||||||||++||||+.++++++|||-|+|++|...-..+++- ++.+ ++|+|+
T Consensus 619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~IL 698 (1381)
T KOG0054|consen 619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVIL 698 (1381)
T ss_pred HccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEE
Confidence 7766543221 13467999999999999999999999999999999999987777655 4333 579999
Q ss_pred EecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 149 VSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 149 vsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|||.++++.+ +|.|++|++|++.. .|+++++.+
T Consensus 699 VTHql~~L~~-ad~Iivl~~G~I~~-~Gty~el~~ 731 (1381)
T KOG0054|consen 699 VTHQLQFLPH-ADQIIVLKDGKIVE-SGTYEELLK 731 (1381)
T ss_pred EeCchhhhhh-CCEEEEecCCeEec-ccCHHHHHh
Confidence 9999999865 59999999999975 799998764
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=159.32 Aligned_cols=157 Identities=25% Similarity=0.304 Sum_probs=123.5
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCC---cceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPN---KGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~---~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.|+...+|+--. ++|||+. +.|.+.++ .|+++.+. ++++|++||++- +|+.++|.+|+....
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~l--LFphlsVg~Nl~fAlp~ 104 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDAL--LFPHLSVGQNLLFALPA 104 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccc--cccccccccceEEecCc
Confidence 455566663233 4899999 98888663 68887542 568999999976 899999999986322
Q ss_pred ---CC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH----HHh
Q psy2681 70 ---NL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA----IKN 141 (211)
Q Consensus 70 ---~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~----l~~ 141 (211)
+. .+..+...+++.|++...++ .+..||||||.||++.|+|+..|+.++||||||.||..-+.++.++ ++.
T Consensus 105 ~~KG~aRr~~a~aAL~~~gL~g~f~~-dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ 183 (213)
T COG4136 105 TLKGNARRNAANAALERSGLDGAFHQ-DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA 183 (213)
T ss_pred ccccHHHHhhHHHHHHHhccchhhhc-ChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 11 23446788999999988876 7899999999999999999999999999999999999776666555 455
Q ss_pred cCCeEEEEecChHHHHhhCCeEEEE
Q psy2681 142 YQGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 142 ~~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
.+...++||||...+. ...||+.+
T Consensus 184 agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 184 AGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred cCCCeEEEecccccCC-CCCeeeee
Confidence 6778999999999986 55676644
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=180.99 Aligned_cols=168 Identities=18% Similarity=0.252 Sum_probs=135.0
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCC-CCCCCCCCHHHHHHhh--
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSG-EHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~-~~l~~~~t~~e~~~~~-- 68 (211)
.|+-+.+-+.+. +-|-|++ +.|.-++.+|+|..++ +..++|+|.+.. ..++..+++.+|+...
T Consensus 284 ~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l 363 (500)
T COG1129 284 AGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASL 363 (500)
T ss_pred CCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhh
Confidence 455555553333 4667888 9999999999998654 235999998764 4578888888886321
Q ss_pred cC------CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 69 FN------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 69 ~~------~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+ ...++++.+.+++...-...++..||||.||||.|||.|+.+|++|||||||.|+|+-++.+++++
T Consensus 364 ~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~l 443 (500)
T COG1129 364 RRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL 443 (500)
T ss_pred hhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHH
Confidence 11 11 123567888898865434458999999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++ |.+||++|.++.++..+||||+||.+|+++.
T Consensus 444 i~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 444 IRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9876 6799999999999999999999999999875
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=169.84 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHhhcCC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHH
Q psy2681 56 FPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN---PDILILDEPTNNLDIES 131 (211)
Q Consensus 56 ~~~~t~~e~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~---p~lllLDEPt~gLD~~~ 131 (211)
+.++|+.|++..+... ...+..++++.+||......+++.+|||||+||++||++|+.+ |+++||||||+|||+..
T Consensus 128 v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~ 207 (261)
T cd03271 128 VLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD 207 (261)
T ss_pred HhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH
Confidence 3566777765443222 1245667899999986322347899999999999999999996 79999999999999999
Q ss_pred HHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE------eCCceee
Q psy2681 132 IDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRK 173 (211)
Q Consensus 132 ~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l------~~g~i~~ 173 (211)
+..+.+.|+++ +.|||++|||++++. .+|+++.| ++|+++.
T Consensus 208 ~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~ 257 (261)
T cd03271 208 VKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVA 257 (261)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE
Confidence 99999998765 579999999999986 68999999 6777753
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=180.72 Aligned_cols=108 Identities=33% Similarity=0.588 Sum_probs=97.5
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC-eEEEEecChH
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-GVILVSHDER 154 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-tiiivsHd~~ 154 (211)
+.++|.-+|+......+++.+||||+|.|++|||+|..+|++|||||||||||++++.+|.+.|.++.. +++++||+.+
T Consensus 201 ~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QD 280 (614)
T KOG0927|consen 201 AAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQD 280 (614)
T ss_pred HHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchh
Confidence 345677777755444458999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred HHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 155 LIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
++..+|..|+.+.+++.+.|.|+++.|..
T Consensus 281 fln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 281 FLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred hhhhHhhhhheecccceeeecCCHHHHhh
Confidence 99999999999999998889999998754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=176.07 Aligned_cols=191 Identities=23% Similarity=0.313 Sum_probs=143.4
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC---CHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR 78 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~---~~~~~~~ 78 (211)
-.++.|.++ |=+ ++||+.+ ++|.++|++|. ....+++|=||.-.+ ..+.||.+++....+. +..-..+
T Consensus 365 ~~gEvigil-GpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~--~~~gtV~~~l~~~~~~~~~~s~~~~e 438 (591)
T COG1245 365 YDGEVIGIL-GPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISP--DYDGTVEDLLRSAIRSAFGSSYFKTE 438 (591)
T ss_pred ecceEEEEE-CCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecC--CCCCcHHHHHHHhhhhhcccchhHHh
Confidence 345667777 554 5999999 99999999998 445689999997542 3466888887643221 1122346
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChH
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDER 154 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~ 154 (211)
+++.++|++..++ ++.+|||||.|||+||.||..++++++||||++.||.+.+..+.+.|+++ ++|.++|.||+.
T Consensus 439 i~~pl~l~~i~e~-~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 439 IVKPLNLEDLLER-PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred hcCccchHHHHhc-ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee
Confidence 8899999887775 89999999999999999999999999999999999999988888777765 579999999999
Q ss_pred HHHhhCCeEEEEeC--CceeeecCC--hHHHHHHHHHHhhhhhhcCCccccc
Q psy2681 155 LIRETDCELWALEK--KNIRKFNGD--FDDYREKLLTSLGEAMVYNPSVAAE 202 (211)
Q Consensus 155 ~~~~~~~~v~~l~~--g~i~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (211)
++..++||++++.. |+--...++ ..+-.+..+..+.--|+.++...++
T Consensus 518 ~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l~vTFRRD~~t~RP 569 (591)
T COG1245 518 MIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTFRRDPETGRP 569 (591)
T ss_pred hhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHHcCcEEecCcccCCC
Confidence 99999999998863 211111121 2233456677777667776654433
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=156.72 Aligned_cols=175 Identities=25% Similarity=0.320 Sum_probs=137.9
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcc--cCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGEL--TPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~--~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
..|+.+.++ |=+ ++|||.+ |+|.- ++++|+|..++ +..+...||.|. -++..++.+++..
T Consensus 28 ~~GEvhaiM-GPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~--ei~GV~~~~fLr~ 104 (251)
T COG0396 28 KEGEVHAIM-GPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPV--EIPGVTNSDFLRA 104 (251)
T ss_pred cCCcEEEEE-CCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCc--cCCCeeHHHHHHH
Confidence 456778888 554 5999999 99965 78999997543 345777899985 3667777777753
Q ss_pred hcCC----------CHHHHHHHHHhCCCCCccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 68 LFNL----------PYEKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 68 ~~~~----------~~~~~~~~l~~~gl~~~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
..+. ....+++.++.+++++...+|.+. .+|||||+|..|+.+++.+|++.|||||-||||..+.+.+.
T Consensus 105 a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~ 184 (251)
T COG0396 105 AMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184 (251)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHH
Confidence 2211 134567789999998733344665 59999999999999999999999999999999999999998
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhC-CeEEEEeCCceeeecCChHHHHHH
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETD-CELWALEKKNIRKFNGDFDDYREK 184 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~-~~v~~l~~g~i~~~~g~~~~~~~~ 184 (211)
+.++++ +.++++|||....+..+. |++.+|-+|+++. .|++ ++.++
T Consensus 185 ~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~-sG~~-el~~~ 234 (251)
T COG0396 185 EGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK-SGDP-ELAEE 234 (251)
T ss_pred HHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe-cCCH-HHHHH
Confidence 888766 569999999999987764 8999999999975 6776 44443
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-23 Score=162.88 Aligned_cols=148 Identities=22% Similarity=0.348 Sum_probs=120.9
Q ss_pred Ccccccc-ccCcccCCcceEEec-------------------CCeEEEEEeCCCCCCCCCCCCHHHHHHh---hcCCC--
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKS-------------------PRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP-- 72 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~-------------------~~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~~~~-- 72 (211)
++|||++ +.|.+.|++|+|... .+..|||+.|... ..|.-...+.++. ..+.+
T Consensus 49 GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~ 126 (235)
T COG4778 49 GKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPRE 126 (235)
T ss_pred cHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHH
Confidence 5899999 999999999999742 1456999999753 3455444444432 12333
Q ss_pred --HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 73 --YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 73 --~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
..++..++.++++++.+...++..+||||||||.|||.++.+-++|+|||||++||..++..+.++|.+. |.++|
T Consensus 127 ~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlv 206 (235)
T COG4778 127 VARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206 (235)
T ss_pred HHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEE
Confidence 3456778999999886666689999999999999999999999999999999999999999999999764 56899
Q ss_pred EEecChHHHHhhCCeEEEEe
Q psy2681 148 LVSHDERLIRETDCELWALE 167 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~ 167 (211)
=+=||.+.-+.+|||++.+.
T Consensus 207 GIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 207 GIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred EeeccHHHHHHHhhheeecc
Confidence 99999999999999998664
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-22 Score=161.59 Aligned_cols=153 Identities=20% Similarity=0.176 Sum_probs=108.8
Q ss_pred eeeeecCCC--Ccccccc-ccCcc-cCCcceEEe----------cCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGEL-TPNKGELRK----------SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~-~p~~G~i~~----------~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~ 74 (211)
.+.++ |-+ ++|||++ |++.+ .+..+.... .....+++++|++.. .+. +.. .++.+..
T Consensus 30 ~~~i~-G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~-~~~---~~r----~~gl~~~ 100 (213)
T cd03279 30 LFLIC-GPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGK-KYR---VER----SRGLDYD 100 (213)
T ss_pred EEEEE-CCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCe-EEE---EEE----ecCCCHH
Confidence 55555 665 5999999 88533 233232221 113468888887641 111 111 1133333
Q ss_pred HHHH--HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 75 KSRR--QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN----------NPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 75 ~~~~--~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~----------~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+.+ .+...++.+..+. ++..||+||+||++||+|++. +|+++||||||++||+.++..+.+.+.++
T Consensus 101 ~~~~~~~l~~g~l~~~l~~-~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~ 179 (213)
T cd03279 101 QFTRIVLLPQGEFDRFLAR-PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI 179 (213)
T ss_pred HHHHhhhhhhcchHHHhcC-CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3322 2344445555554 789999999999999999985 57899999999999999999999988765
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
+.|||++||+++++..++++++++++|+.
T Consensus 180 ~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 180 RTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 46999999999999999999999998864
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=162.18 Aligned_cols=157 Identities=19% Similarity=0.246 Sum_probs=113.4
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCC-cceEEec--------------CCeEEEEEeCCCCC-------CCCCCCCHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPN-KGELRKS--------------PRLRIGKFDQHSGE-------HLFPDDTPCE 63 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~-~G~i~~~--------------~~~~ig~v~q~~~~-------~l~~~~t~~e 63 (211)
.+..|.|-+ ++|||++ |.+.+.+. .|+++.. ....+++++|++.. .+.+.+++.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 344455776 5999999 99988775 3454321 12378999998531 1233444443
Q ss_pred HHHh-----h-c---CCCHHHHHHHHHhCCCC--------------------CccccCCCCCCChHHHHHHHHHHHHh--
Q psy2681 64 YLMK-----L-F---NLPYEKSRRQLGMFGLP--------------------SYAHTIPIRDLSGGQKARVALAELTL-- 112 (211)
Q Consensus 64 ~~~~-----~-~---~~~~~~~~~~l~~~gl~--------------------~~~~~~~~~~LSgG~kqRv~iaral~-- 112 (211)
++.. . . ....+++.++++.+|+. +..+ .++.+||+|||||++||+|++
T Consensus 106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~-~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWK-ESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhc-ccccccCHHHHHHHHHHHHHHHh
Confidence 2211 1 1 12345678899999986 2223 368999999999999999998
Q ss_pred --cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 113 --NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 113 --~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
.+|+++|+||||++||+.++..+.+.|+++ +.++|++||+.+.. +.||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~-~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMF-NNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHH-HhCCEEEEEE
Confidence 578999999999999999999999999875 46899999996555 5689998654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=189.43 Aligned_cols=174 Identities=20% Similarity=0.231 Sum_probs=140.1
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
|.|..++|+.++ |-. ++|||.. +..+..|.+|+|..++ |.+++.+||+|- +|. -|++.|+--
T Consensus 1161 ~~I~p~eKVGIV-GRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv--LFs-GTvR~NLDP 1236 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIV-GRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPV--LFS-GTVRFNLDP 1236 (1381)
T ss_pred EEEcCCceEEEe-CCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCc--eec-CccccccCc
Confidence 678889999999 664 5999999 9999999999998653 678999999985 443 467777654
Q ss_pred hcCCCHHHHHHHHHhCCCCCc-------ccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 68 LFNLPYEKSRRQLGMFGLPSY-------AHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 68 ~~~~~~~~~~~~l~~~gl~~~-------~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+...+++++.++|+...|.+. ++. .--.++|-||||-++|||||+.+.+||+|||.|+++|+++-..+.+
T Consensus 1237 f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~ 1316 (1381)
T KOG0054|consen 1237 FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 1316 (1381)
T ss_pred ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHH
Confidence 444456666666666554321 111 1236799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|++. +.|||.|-|.++.+... |||+||++|++++++ ++..+
T Consensus 1317 tIR~~F~dcTVltIAHRl~TVmd~-DrVlVld~G~v~Efd-sP~~L 1360 (1381)
T KOG0054|consen 1317 TIREEFKDCTVLTIAHRLNTVMDS-DRVLVLDAGRVVEFD-SPAEL 1360 (1381)
T ss_pred HHHHHhcCCeEEEEeeccchhhhc-CeEEEeeCCeEeecC-ChHHH
Confidence 99874 57999999999999875 999999999999874 44443
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-21 Score=154.84 Aligned_cols=147 Identities=30% Similarity=0.360 Sum_probs=109.0
Q ss_pred eeeecCCC--Ccccccc-c----cCcccCCcceEEe--------cCCeEEEEEeCCC-CCCC--CCCCCHHHHHHhhcCC
Q psy2681 10 IAVLQGLR--NPLSFIK-P----KGELTPNKGELRK--------SPRLRIGKFDQHS-GEHL--FPDDTPCEYLMKLFNL 71 (211)
Q Consensus 10 ~~~i~~~~--~~sTLl~-i----~G~~~p~~G~i~~--------~~~~~ig~v~q~~-~~~l--~~~~t~~e~~~~~~~~ 71 (211)
+-.|.|-+ ++|||++ + .|...|++|.+.. .....+++++|++ ...+ ....++++++...
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~--- 100 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC--- 100 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee---
Confidence 44555776 5999999 8 5999998875431 1245789999986 2211 2233566655321
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHH------HHHHHHHhcCCCeEEEeCCCCCCCHHHHH-HHHHHHHhc--
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR------VALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNY-- 142 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqR------v~iaral~~~p~lllLDEPt~gLD~~~~~-~l~~~l~~~-- 142 (211)
......+.+ + +++.+||+||+|| ++||+|++.+|+++++||||++||+.++. .+.++|+++
T Consensus 101 ~~~~~~~~~---------~-~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~ 170 (204)
T cd03240 101 HQGESNWPL---------L-DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS 170 (204)
T ss_pred chHHHHHHH---------h-cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 223333333 3 3678999999996 78999999999999999999999999999 999999765
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+.|||++||+++.+. .||+++.|.+.+
T Consensus 171 ~~~~~iiiitH~~~~~~-~~d~i~~l~~~~ 199 (204)
T cd03240 171 QKNFQLIVITHDEELVD-AADHIYRVEKDG 199 (204)
T ss_pred ccCCEEEEEEecHHHHh-hCCEEEEEeeCC
Confidence 459999999999875 689999886543
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-21 Score=157.90 Aligned_cols=75 Identities=27% Similarity=0.326 Sum_probs=65.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
.++..||||||||++||+|++. +|+++|+||||++||+.++..+++.|+++ +.+||++||+. ++.++||++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~-~~~~~~d~i~~ 232 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP-ELLEVADKFYG 232 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHhhCCEEEE
Confidence 3789999999999999999973 68999999999999999999999999887 35777777775 46689999998
Q ss_pred Ee
Q psy2681 166 LE 167 (211)
Q Consensus 166 l~ 167 (211)
|.
T Consensus 233 l~ 234 (243)
T cd03272 233 VK 234 (243)
T ss_pred EE
Confidence 75
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-21 Score=146.40 Aligned_cols=113 Identities=35% Similarity=0.485 Sum_probs=90.8
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
+..+..+.++ |-+ ++|||++ ++|..+|++|.|..+. +..++|++|++. +++..++.++.
T Consensus 8 i~~g~~~~i~-G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~tv~~~~---- 80 (137)
T PF00005_consen 8 IKPGEIVAIV-GPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQ--LFPGLTVRENE---- 80 (137)
T ss_dssp EETTSEEEEE-ESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHC--HHTTSBHHHHH----
T ss_pred EcCCCEEEEE-ccCCCccccceeeecccccccccccccccccccccccccccccccccccccc--ccccccccccc----
Confidence 4566777777 554 6999999 9999999999997642 346999999854 77888888872
Q ss_pred CCCHHHHHHHHHhCCCCCcccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
....+.++++.+++...... +++.+||+|||||++||+|++.+|+++|||||||
T Consensus 81 --~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 --SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp --HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred --ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 24457788888887654332 2339999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=163.63 Aligned_cols=173 Identities=25% Similarity=0.276 Sum_probs=128.4
Q ss_pred cccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-C
Q psy2681 5 CLKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-N 70 (211)
Q Consensus 5 ~~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~ 70 (211)
-++..+.+++-= -++||+++ +...+.+++|.|..++ ++.||.+||+.- +| +.|...|+.... .
T Consensus 287 ~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtv--LF-NDti~yni~ygr~~ 363 (497)
T COG5265 287 PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV--LF-NDTIAYNIKYGRPD 363 (497)
T ss_pred cCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccce--eh-hhhHHHHHhccCcc
Confidence 466777777332 25899999 8999999999998653 456999999864 44 446666665322 2
Q ss_pred CCHHHHHHHHHhCCCC-------Ccccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 71 LPYEKSRRQLGMFGLP-------SYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~-------~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
...+++.+..+...+. +-.+. .+.-.|||||||||+|||+++.+|++++|||.||+||..+.+++...|+
T Consensus 364 at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~ 443 (497)
T COG5265 364 ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR 443 (497)
T ss_pred ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHH
Confidence 2333333333332221 11111 1223599999999999999999999999999999999999999999998
Q ss_pred hc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+. +.|-+++.|.+..+.. +|.+++|++|++++ .|+-.++.
T Consensus 444 ~~~~~rttlviahrlsti~~-adeiivl~~g~i~e-rg~h~~ll 485 (497)
T COG5265 444 EVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE-RGTHEELL 485 (497)
T ss_pred HHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEe-cCcHHHHH
Confidence 76 5699999999999975 59999999999986 67766554
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.9e-22 Score=153.49 Aligned_cols=186 Identities=18% Similarity=0.207 Sum_probs=143.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
|.-+|+.+-+|+=.. ++|||+- ++|++ |-+|+|...+ .++-+|+.|+..+ ...+.|+.|+....
T Consensus 21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p--~f~mpV~~YL~L~q 97 (248)
T COG4138 21 EVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP--PFAMPVWHYLTLHQ 97 (248)
T ss_pred ccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCC--cchhhhhhhhhhcC
Confidence 566889999994333 5999999 99987 6699997643 2345788887642 34567888875332
Q ss_pred CC--CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc-------CCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 70 NL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 70 ~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~-------~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. ....+..+...+++++++.+ .+++|||||-|||-+|..+++ ..+++|+|||.|+||+..+..+-.+|.
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~R-s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~ 176 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLS 176 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhh-hhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHH
Confidence 21 12345678889999998875 789999999999999988763 457999999999999999988888887
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH-HHHHHHHHhhhhh
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YREKLLTSLGEAM 193 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~-~~~~~~~~~~~~~ 193 (211)
++ +.+|||++||++--.+-++++|.+..|++.. .|..++ +....+.+.++..
T Consensus 177 ~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~-~G~~~eVlt~~vL~q~fg~~ 232 (248)
T COG4138 177 ALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA-SGRREEVLTPPVLAQAYGMN 232 (248)
T ss_pred HHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe-ecchhhhcChHHHHHHhccc
Confidence 66 5699999999999999999999999999875 566554 4456777776543
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-21 Score=158.91 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=105.2
Q ss_pred eeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-----------cCCCHH-
Q psy2681 10 IAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-----------FNLPYE- 74 (211)
Q Consensus 10 ~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-----------~~~~~~- 74 (211)
+-.|.|-+ ++||+++ |.-.. +..+......+++++++... +++.+++.++...+ ++....
T Consensus 27 i~~ivGpNGaGKSTll~~i~~~~---G~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 101 (212)
T cd03274 27 FSAIVGPNGSGKSNVIDSMLFVF---GFRASKMRQKKLSDLIHNSA--GHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDH 101 (212)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---ccCHHHhhhhhHHHHhcCCC--CCCCCceEEEEEEEEeCCCHHHHHHCCcCCCC
Confidence 34444776 5999999 75111 11111111235777777653 45555544432211 111111
Q ss_pred -H----HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--C
Q psy2681 75 -K----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--Q 143 (211)
Q Consensus 75 -~----~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~ 143 (211)
. ..++++.+++++..++ ++..||+|||||++||+|++. +|+++++||||+|||+.++..+.+.++++ +
T Consensus 102 ~~~~v~~~~~~~~~~L~~~~~~-~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~ 180 (212)
T cd03274 102 NRFLILQGEVEQIAQMPKKSWK-NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKN 180 (212)
T ss_pred CceEEcCCcEEEeecccccccc-chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCC
Confidence 1 1445677888766654 689999999999999999974 58999999999999999999999999987 3
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
.|+|++||+. .+.++||++++|..-
T Consensus 181 ~~~iivs~~~-~~~~~~d~v~~~~~~ 205 (212)
T cd03274 181 AQFIVISLRN-NMFELADRLVGIYKT 205 (212)
T ss_pred CEEEEEECcH-HHHHhCCEEEEEEec
Confidence 5999999995 566899999988643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=146.36 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=104.9
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCC-----cce----EEe--cCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPN-----KGE----LRK--SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 71 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~-----~G~----i~~--~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~ 71 (211)
..-.+.+|.|-+ ++|||+. +....... .|. +.. .....+.+.+++.. ++++ .....
T Consensus 19 f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~--~~~~--------~~~~~ 88 (198)
T cd03276 19 FGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG--LDAN--------PLCVL 88 (198)
T ss_pred cCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC--ccCC--------cCCHH
Confidence 334465677876 5999999 74222111 121 001 11345788888754 3331 01111
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-----
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNY----- 142 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----- 142 (211)
....+.++++. .+... +++++||+|||||++||+|+ +.+|+++||||||+|||+.++..+.++|.+.
T Consensus 89 ~~~~~~~~l~~---~~~~~-~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~ 164 (198)
T cd03276 89 SQDMARSFLTS---NKAAV-RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQP 164 (198)
T ss_pred HHHHHHHHhcc---ccccC-CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCC
Confidence 23456667766 44444 47899999999999999999 5899999999999999999999999988763
Q ss_pred C-CeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 143 Q-GGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 143 ~-~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+ .|||++||+++.+..+ |+|.++..+.
T Consensus 165 ~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 165 GRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred CcEEEEEECCcccccccc-cceeEEEecC
Confidence 2 3899999999999887 8999887653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-20 Score=152.44 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=106.8
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------------CeEEEEEeCCCCCC-CCCCCCHHH----H
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------------RLRIGKFDQHSGEH-LFPDDTPCE----Y 64 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------------~~~ig~v~q~~~~~-l~~~~t~~e----~ 64 (211)
.+..|.|-+ ++|||+. |++...+..|.++... ...+...++..... .....++.+ +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 355666886 5999999 9988877666654210 12344444322100 000000000 0
Q ss_pred HHhhcCCCHHHHHHHHHhCCCCCcc---------------------ccCCCCCCChHHHHHHHHHHHHhcC----CCeEE
Q psy2681 65 LMKLFNLPYEKSRRQLGMFGLPSYA---------------------HTIPIRDLSGGQKARVALAELTLNN----PDILI 119 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~l~~~gl~~~~---------------------~~~~~~~LSgG~kqRv~iaral~~~----p~lll 119 (211)
...........+.++++.+|+.... ...++.+||+|||||++||++++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 0001123355667788888884210 0124589999999999999999864 89999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 120 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 120 LDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
|||||++||+.++..+.+.|.++ +.+||+|||+.+.+ +.||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 99999999999999999999876 45999999998776 67999988764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=172.51 Aligned_cols=101 Identities=26% Similarity=0.321 Sum_probs=87.1
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.+..+||......+++.+|||||+|||.||++|+.+| +++||||||+|||+.+...+.+.|+++ +.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4677888654223588999999999999999999986 899999999999999999999999765 56999999999
Q ss_pred HHHHhhCCeEEEE------eCCceeeecCChHHH
Q psy2681 154 RLIRETDCELWAL------EKKNIRKFNGDFDDY 181 (211)
Q Consensus 154 ~~~~~~~~~v~~l------~~g~i~~~~g~~~~~ 181 (211)
+++. .||++++| ++|+++ +.|+..++
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el 581 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEI 581 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEe-eccCHHHH
Confidence 9986 89999999 788875 46777665
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-20 Score=165.47 Aligned_cols=172 Identities=23% Similarity=0.266 Sum_probs=127.5
Q ss_pred ccCeeeeecCC-CCcccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CC
Q psy2681 6 LKLRIAVLQGL-RNPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL 71 (211)
Q Consensus 6 ~~~~~~~i~~~-~~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~ 71 (211)
.|-.+++++-- -++||+++ +......++|.|+.++ |..||.|||+.- +|. .|+..|+.... ..
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtv--LFN-dTI~yNIryak~~A 639 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTV--LFN-DTILYNIRYAKPSA 639 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcce--eec-ceeeeheeecCCCC
Confidence 45667777333 36999999 8899999999998654 567999999864 444 45555554221 12
Q ss_pred CHHHHHHHHH-------hCCCCCcccc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 72 PYEKSRRQLG-------MFGLPSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 72 ~~~~~~~~l~-------~~gl~~~~~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+.+++.++.+ .+++++-... .+--.|||||||||+|||+++..|.+++|||.||+||..+.+.+...|.+
T Consensus 640 sneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~r 719 (790)
T KOG0056|consen 640 SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALAR 719 (790)
T ss_pred ChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHH
Confidence 2333333222 2344332222 12336999999999999999999999999999999999999999999988
Q ss_pred c--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 142 Y--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 142 ~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
. +.|-|+|.|.+..+.. +|.|+++.+|.+++ .|.-+++.
T Consensus 720 lca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvE-rG~HeeLl 760 (790)
T KOG0056|consen 720 LCANRTTIVVAHRLSTIVN-ADLILVISNGRIVE-RGRHEELL 760 (790)
T ss_pred HhcCCceEEEeeeehheec-ccEEEEEeCCeEee-cCcHHHHH
Confidence 7 5699999999999975 59999999999976 67766654
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=167.63 Aligned_cols=123 Identities=28% Similarity=0.322 Sum_probs=99.3
Q ss_pred CCCHHHHHHhhcCC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHH
Q psy2681 58 DDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESID 133 (211)
Q Consensus 58 ~~t~~e~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~ 133 (211)
++|+.|++..+... ...+..+.++.+||......+++.+|||||+||+.||++|+.+| +++||||||+|||+..+.
T Consensus 791 ~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~ 870 (943)
T PRK00349 791 DMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIR 870 (943)
T ss_pred cCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHH
Confidence 56777766544222 12345678999999763233478999999999999999999999 999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
.+.+.|+++ +.|||+||||++.+. .+|+++.| ++|+++ +.|+.+++.
T Consensus 871 ~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~ 926 (943)
T PRK00349 871 KLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVA 926 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHH
Confidence 999998765 569999999999985 68999999 577776 467776654
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=172.87 Aligned_cols=102 Identities=26% Similarity=0.328 Sum_probs=88.5
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
+++.+||.....++++.+|||||+|||+||++|+.+| +++||||||+|||+.....+.++|+++ +.|||+||||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 6888899755223589999999999999999999997 999999999999999999999998765 57999999999
Q ss_pred HHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 154 RLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 154 ~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
+++. .||++++| .+|+++ +.|+++++.
T Consensus 552 ~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~~ 584 (943)
T PRK00349 552 DTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEIM 584 (943)
T ss_pred HHHH-hCCEEEEeccccCCCCCEEe-eccCHHHHh
Confidence 9986 59999999 888875 578877763
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-19 Score=160.31 Aligned_cols=160 Identities=25% Similarity=0.236 Sum_probs=125.3
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CCCHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRR 78 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~~~~~~~~ 78 (211)
+..|.++=+.+-=. ++|||+| |+|+-+.-+|+|.......+-|+||.|+ ++.-|..|.+.... ..+++...+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY---~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY---LPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC---CCCccHHHHHhCCCCCCCCChHHHHH
Confidence 45566766663333 5999999 9999999999998776667899999986 55558888776322 245677888
Q ss_pred HHHhCCCCCcccc-----CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEec
Q psy2681 79 QLGMFGLPSYAHT-----IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN--YQGGVILVSH 151 (211)
Q Consensus 79 ~l~~~gl~~~~~~-----~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~--~~~tiiivsH 151 (211)
+|.++||.+...+ +=-..||+||||||++||.++++|++++|||-|++||+.+...+++++++ .+.|||-|+|
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 9999998753221 01146999999999999999999999999999999999999999999998 4779999999
Q ss_pred ChHHHHhhCCeEEEEe
Q psy2681 152 DERLIRETDCELWALE 167 (211)
Q Consensus 152 d~~~~~~~~~~v~~l~ 167 (211)
..... .+.++.+.+.
T Consensus 573 r~tl~-~~h~~~l~l~ 587 (604)
T COG4178 573 RPTLW-NFHSRQLELL 587 (604)
T ss_pred chhhH-HHHhhheeec
Confidence 77655 4445555443
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=166.68 Aligned_cols=104 Identities=27% Similarity=0.396 Sum_probs=88.1
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc---CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN---NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
+..++++.+||......+++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+.+.|+++ +.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345688899997532234789999999999999999997 59999999999999999999999999865 579999
Q ss_pred EecChHHHHhhCCeEEEE------eCCceeeecCChHH
Q psy2681 149 VSHDERLIRETDCELWAL------EKKNIRKFNGDFDD 180 (211)
Q Consensus 149 vsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~ 180 (211)
+|||++++. .||++++| ++|+++ +.|+.++
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~ 922 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEE 922 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHH
Confidence 999999985 68999999 677776 4566554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=151.69 Aligned_cols=167 Identities=23% Similarity=0.327 Sum_probs=133.8
Q ss_pred ccCeeeeecCC--CCcccccc-ccCcccCCcceEEecCC-------------eEEEEEeCCC-CCCCCCCCCHHHHHHhh
Q psy2681 6 LKLRIAVLQGL--RNPLSFIK-PKGELTPNKGELRKSPR-------------LRIGKFDQHS-GEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 6 ~~~~~~~i~~~--~~~sTLl~-i~G~~~p~~G~i~~~~~-------------~~ig~v~q~~-~~~l~~~~t~~e~~~~~ 68 (211)
+|+-+.+- |. ++.+.|+. |+|+.+|.+|+|..++. ..++|+|.+. ...+.+++++.+|+...
T Consensus 283 ~GEIvGIA-GV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~ 361 (501)
T COG3845 283 AGEIVGIA-GVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG 361 (501)
T ss_pred cCcEEEEE-ecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhh
Confidence 34444444 66 56889999 99999998999976542 3589999886 34577889999987521
Q ss_pred -cC---------CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 69 -FN---------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 69 -~~---------~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
+. .. ...+.++++.|++...-...++.+||||.+||+-+||-+..+|++|++-.||.|||..+.+.
T Consensus 362 ~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~ 441 (501)
T COG3845 362 RHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEF 441 (501)
T ss_pred hccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHH
Confidence 11 11 13356789999986332334789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+.+.|.+. +.+|+++|-|++++..+||||.+|.+|+++.
T Consensus 442 I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 442 IHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred HHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 99988654 6799999999999999999999999999864
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-19 Score=157.57 Aligned_cols=114 Identities=25% Similarity=0.531 Sum_probs=103.6
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
.+++.+|.-+|++.....+|...+|||-|.||+|||||...|-+|.||||||+||..+..|+-+.|.-|.+|++|||||.
T Consensus 390 arARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ 469 (807)
T KOG0066|consen 390 ARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 (807)
T ss_pred hHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence 34567899999987767779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeEEEEeCCceeeecCChHHHHHHHHH
Q psy2681 154 RLIRETDCELWALEKKNIRKFNGDFDDYREKLLT 187 (211)
Q Consensus 154 ~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~ 187 (211)
.|+..+|..|+.|.+.++-.|.|+|.-+.+.+.+
T Consensus 470 gFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Q 503 (807)
T KOG0066|consen 470 GFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQ 503 (807)
T ss_pred chHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 9999999999999999998889998876554433
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-18 Score=169.73 Aligned_cols=102 Identities=25% Similarity=0.375 Sum_probs=88.4
Q ss_pred HHHHhCCCCCc-cccCCCCCCChHHHHHHHHHHHHh---cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 78 RQLGMFGLPSY-AHTIPIRDLSGGQKARVALAELTL---NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 78 ~~l~~~gl~~~-~~~~~~~~LSgG~kqRv~iaral~---~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
++++.+|+... .+ +++.+|||||+||++||++|+ .+|+++||||||+|||+.++..+.++|+++ +.|||+||
T Consensus 791 ~~L~~vGL~~l~l~-q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIs 869 (1809)
T PRK00635 791 HALCSLGLDYLPLG-RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869 (1809)
T ss_pred HHHHHcCCcchhhc-CccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 47888999865 45 488999999999999999998 699999999999999999999999999765 56999999
Q ss_pred cChHHHHhhCCeEEEEe------CCceeeecCChHHHH
Q psy2681 151 HDERLIRETDCELWALE------KKNIRKFNGDFDDYR 182 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l~------~g~i~~~~g~~~~~~ 182 (211)
|+++++ +.+|++++|. +|+++ ..|+.+++.
T Consensus 870 Hdl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~ 905 (1809)
T PRK00635 870 HNMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELI 905 (1809)
T ss_pred CCHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHH
Confidence 999999 7999999995 55664 467777654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-18 Score=170.16 Aligned_cols=101 Identities=30% Similarity=0.406 Sum_probs=85.9
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.|..+||.....++++.+|||||+|||+||+||+.+| +++||||||+|||+..+..+.++|+++ +.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4677899765223478999999999999999999999 899999999999999999999998865 56999999999
Q ss_pred HHHHhhCCeEEEEe------CCceeeecCChHHH
Q psy2681 154 RLIRETDCELWALE------KKNIRKFNGDFDDY 181 (211)
Q Consensus 154 ~~~~~~~~~v~~l~------~g~i~~~~g~~~~~ 181 (211)
+. .+.||++++|. +|+++ +.|+.+++
T Consensus 539 ~v-i~~aDrVi~L~pGag~~gG~Iv-~~G~~~ei 570 (1809)
T PRK00635 539 QM-ISLADRIIDIGPGAGIFGGEVL-FNGSPREF 570 (1809)
T ss_pred HH-HHhCCEEEEEcCCcccCCCEEE-EecCHHHH
Confidence 94 58899999996 55664 56777766
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-18 Score=166.02 Aligned_cols=163 Identities=23% Similarity=0.279 Sum_probs=126.3
Q ss_pred Ccccccc-ccCccc--CCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHh---hc---CCC----HHHH
Q psy2681 18 NPLSFIK-PKGELT--PNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LF---NLP----YEKS 76 (211)
Q Consensus 18 ~~sTLl~-i~G~~~--p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~---~~~----~~~~ 76 (211)
++|||++ ++|-.. ..+|+|..++ ++.+||+-|+.. ..+..||.|-+.. +. ..+ .+.+
T Consensus 829 GKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~Di--H~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 829 GKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDI--HSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred chHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccc--cCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 5899999 998752 1345554432 457999999864 3588999997642 11 122 1347
Q ss_pred HHHHHhCCCCCccccCCCCC----CChHHHHHHHHHHHHhcCC-CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 77 RRQLGMFGLPSYAHTIPIRD----LSGGQKARVALAELTLNNP-DILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~----LSgG~kqRv~iaral~~~p-~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
+++++.++|+++.+. -++. ||..||+|+.||--|+.+| .+|+|||||||||..+...+.++++++ |.||+.
T Consensus 907 e~Vi~lleL~~~~da-iVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 907 EEVIELLELKEYADA-LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHhCchhhhhh-hccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 889999999876664 4555 9999999999999999999 999999999999999999999999876 779999
Q ss_pred EecChH-HHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 149 VSHDER-LIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 149 vsHd~~-~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+-|.+. .+.+..|+++.|+.|+-..|-|+..+-.+
T Consensus 986 TIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 999974 33455699999999887778777654333
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-18 Score=137.69 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=106.5
Q ss_pred eEEEEEeCCCCCCCCCCCCHHHHH-Hh------------hcCCCHHHHHHHHHhCCCCCccc--cCCCCCCChHHHHHHH
Q psy2681 42 LRIGKFDQHSGEHLFPDDTPCEYL-MK------------LFNLPYEKSRRQLGMFGLPSYAH--TIPIRDLSGGQKARVA 106 (211)
Q Consensus 42 ~~ig~v~q~~~~~l~~~~t~~e~~-~~------------~~~~~~~~~~~~l~~~gl~~~~~--~~~~~~LSgG~kqRv~ 106 (211)
..|+++||+|..-+.|..++...+ .. .+++.+.++-++|.++|+.+..+ ..++.+|--|+-|||.
T Consensus 89 ~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVM 168 (330)
T COG4170 89 HNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVM 168 (330)
T ss_pred cchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeee
Confidence 358899999864455555443222 11 12344567788999999976432 2367999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 107 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 107 iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
||.|++.+|++||.|||||++++.++.+++.+|.+. +.||+++|||+..+.+.||++-||.-|+-++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 999999999999999999999999999999999765 4599999999999999999999999887654
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-18 Score=148.92 Aligned_cols=93 Identities=29% Similarity=0.376 Sum_probs=83.5
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEec
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 151 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsH 151 (211)
...++.++++|....++ .+++|||||.||++||.|++.+++++++||||+.||+..+-...+.++++ +++||+|.|
T Consensus 193 ~~devve~l~L~nvl~r-~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 193 KFDEVVERLGLENVLDR-DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred cHHHHHHHhcchhhhhh-hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 35678899999988775 79999999999999999999999999999999999999998888888876 469999999
Q ss_pred ChHHHHhhCCeEEEEeC
Q psy2681 152 DERLIRETDCELWALEK 168 (211)
Q Consensus 152 d~~~~~~~~~~v~~l~~ 168 (211)
|+..+..++|-+.++..
T Consensus 272 DLavLD~lsD~vhI~YG 288 (591)
T COG1245 272 DLAVLDYLSDFVHILYG 288 (591)
T ss_pred hHHHHHHhhheeEEEec
Confidence 99999999888877753
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-16 Score=128.70 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=66.9
Q ss_pred CCCCCCChHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C-CeEEEEecChHHHHhhCC-
Q psy2681 92 IPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNY----Q-GGVILVSHDERLIRETDC- 161 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~-~tiiivsHd~~~~~~~~~- 161 (211)
..+.+||+||||++.+++++ +.+|+++|+||||++||+.++..+.+.+.+. + .|+|++||++......++
T Consensus 122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~ 201 (213)
T cd03277 122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEK 201 (213)
T ss_pred cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCc
Confidence 46789999999998877654 5899999999999999999999999998654 2 379999999887777765
Q ss_pred -eEEEEeCCc
Q psy2681 162 -ELWALEKKN 170 (211)
Q Consensus 162 -~v~~l~~g~ 170 (211)
++++|.+|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 677888876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=121.24 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 97 LSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 97 LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
||+||+||++||++++ .+|+++++|||+++||+..+..+.+.+.++ +.++|++||+.+.+. .+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999998765 469999999998875 7899998865
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-16 Score=128.56 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=66.3
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HHHh---cCCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKN---YQGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~---~~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
..+.+|+||+|++.++++ +.+|+++|+||||+|||+.....+.. .+.+ .+.++|++||+. .+...+++++.+++
T Consensus 88 ~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~-~l~~~~d~~~~l~~ 165 (200)
T cd03280 88 SLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG-ELKAYAYKREGVEN 165 (200)
T ss_pred CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH-HHHHHHhcCCCeEE
Confidence 568999999999999988 48999999999999999999887753 4443 367999999985 55678899999999
Q ss_pred Ccee
Q psy2681 169 KNIR 172 (211)
Q Consensus 169 g~i~ 172 (211)
|++.
T Consensus 166 g~l~ 169 (200)
T cd03280 166 ASME 169 (200)
T ss_pred EEEE
Confidence 9885
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-16 Score=129.67 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 95 RDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
..|||||+||++||++++. +|+++++||||++||+..+..+.+.+.++ +.|+|++||++... ..+|+++.+.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEE
Confidence 3599999999999987654 99999999999999999999999999876 45999999999865 68999999887
Q ss_pred Cc
Q psy2681 169 KN 170 (211)
Q Consensus 169 g~ 170 (211)
++
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 64
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=134.12 Aligned_cols=155 Identities=20% Similarity=0.174 Sum_probs=116.6
Q ss_pred eecCCC--Ccccccc-ccCcccCCcceEEecCC---eEEEEEeCCCCCCCCCCCCHHHHHHhh--------cCCCHHHHH
Q psy2681 12 VLQGLR--NPLSFIK-PKGELTPNKGELRKSPR---LRIGKFDQHSGEHLFPDDTPCEYLMKL--------FNLPYEKSR 77 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~---~~ig~v~q~~~~~l~~~~t~~e~~~~~--------~~~~~~~~~ 77 (211)
+|+|-. ++|+|+| +.|+-+..+|++.+..+ ..+-|+||.|. ++.-|..+.+... ...+.+++.
T Consensus 465 LItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPY---mt~GTLRdQvIYP~~~~~~~~~~~~d~~i~ 541 (659)
T KOG0060|consen 465 LITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY---MTLGTLRDQVIYPLKAEDMDSKSASDEDIL 541 (659)
T ss_pred EEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCC---ccccchhheeeccCccccccccCCCHHHHH
Confidence 566664 5999999 99998889999987654 34899999985 3334666654321 112345566
Q ss_pred HHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEE
Q psy2681 78 RQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVI 147 (211)
Q Consensus 78 ~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tii 147 (211)
..|+.++|.+...+ .=...||+||+||+++||.+.++|++-||||-|+++|.+....+.+.+++.+.|.|
T Consensus 542 r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~i 621 (659)
T KOG0060|consen 542 RILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFI 621 (659)
T ss_pred HHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEE
Confidence 66666555431110 01357999999999999999999999999999999999999999999999999999
Q ss_pred EEecChHHHHhhCCeEEEEeCCc
Q psy2681 148 LVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
-|+|...+- ++=+.++-|..++
T Consensus 622 SVgHRkSL~-kfHd~~L~~~g~g 643 (659)
T KOG0060|consen 622 SVGHRKSLW-KFHDYVLRMDGRG 643 (659)
T ss_pred EeccHHHHH-hhhhEEEEecCCC
Confidence 999987765 4557777776543
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-15 Score=146.38 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCCCCCChHHHHHHHHHHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHh
Q psy2681 92 IPIRDLSGGQKARVALAELTLN----------NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRE 158 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~~----------~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 158 (211)
++++.|||||++||+||+||+. +|++||+||||++||+.+...+.+.|..+ +.+|+||||++++...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 4789999999999999999986 79999999999999999999999998765 5699999999999999
Q ss_pred hCCeEEEEeCC
Q psy2681 159 TDCELWALEKK 169 (211)
Q Consensus 159 ~~~~v~~l~~g 169 (211)
++++|+|++.+
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-16 Score=136.97 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=116.0
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCC-C--CC----CCCCCCHHHHHHhhcC-CCHHH
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHS-G--EH----LFPDDTPCEYLMKLFN-LPYEK 75 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~-~--~~----l~~~~t~~e~~~~~~~-~~~~~ 75 (211)
.|+-.=+|++.. ++|||.+ ++|+.+|++|+|..++.. |..+. . .. .|.+.-...-+....+ .+.+.
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p----V~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~ 423 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP----VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQL 423 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc----CCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHH
Confidence 455566787775 5999999 999999999999887531 11000 0 00 0000000000111111 24566
Q ss_pred HHHHHHhCCCCCc---ccc-CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH----HHhcCCeEE
Q psy2681 76 SRRQLGMFGLPSY---AHT-IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA----IKNYQGGVI 147 (211)
Q Consensus 76 ~~~~l~~~gl~~~---~~~-~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~----l~~~~~tii 147 (211)
+..+++++.+.+. .+. -..-.||.|||+|+++.-|++.+.+++++||=.+.-||.-++++... +++.|+||+
T Consensus 424 i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~ 503 (546)
T COG4615 424 IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIF 503 (546)
T ss_pred HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEE
Confidence 7777777766431 111 12357999999999999999999999999999999999999988765 467799999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecC
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNG 176 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g 176 (211)
.||||-... ..+||++.+.+|++++..|
T Consensus 504 aIsHDd~YF-~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 504 AISHDDHYF-IHADRLLEMRNGQLSELTG 531 (546)
T ss_pred EEecCchhh-hhHHHHHHHhcCceeeccc
Confidence 999997765 4679999999999987544
|
|
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-15 Score=117.11 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=121.0
Q ss_pred eecCCC--Ccccccc-ccCcccCCcceEEecCC-----------eEEEEEeCCC--------CCCCCCCCCHHHHHHhhc
Q psy2681 12 VLQGLR--NPLSFIK-PKGELTPNKGELRKSPR-----------LRIGKFDQHS--------GEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~-----------~~ig~v~q~~--------~~~l~~~~t~~e~~~~~~ 69 (211)
++.|-+ ++|||+| ++|---.-.|.|...++ ....|+--+= ...+..+.++...+....
T Consensus 44 LlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~ 123 (291)
T KOG2355|consen 44 LLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVG 123 (291)
T ss_pred EEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhcc
Confidence 344665 5999999 89877666677764321 1233332110 001334666666666555
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCe
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGG 145 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~t 145 (211)
+...++-+++++.++++-.+ +...+|-|||+||+|++.|++.=++|+|||-|-.||+.++..+++++++- +.|
T Consensus 124 g~dp~Rre~LI~iLDIdl~W---RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat 200 (291)
T KOG2355|consen 124 GDDPERREKLIDILDIDLRW---RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT 200 (291)
T ss_pred CCChhHhhhhhhheeccceE---EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence 55566677788888886432 45789999999999999999999999999999999999999999999853 679
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 146 VILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|++.||..+=++...+.++.+++|+++.
T Consensus 201 IVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 201 IVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EEEEeeeccchhhcchhEEEecCCeeee
Confidence 9999999999999999999999999864
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-15 Score=135.09 Aligned_cols=75 Identities=25% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHhcC----CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 95 RDLSGGQKARVALAELTLNN----PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
+.|||||+||++||++++.. |+++||||||+|||+.+...+.+.|+++ +.+||+|||++..+. .|+++++|.+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 57999999999999999985 6999999999999999999999999876 569999999999885 8999999987
Q ss_pred Cc
Q psy2681 169 KN 170 (211)
Q Consensus 169 g~ 170 (211)
+.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 53
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=134.15 Aligned_cols=89 Identities=27% Similarity=0.337 Sum_probs=73.3
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh----------cCCCeEEEeCCC-CCCCHHHHHHHHHHHHhc-CCe
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL----------NNPDILILDEPT-NNLDIESIDALAEAIKNY-QGG 145 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~----------~~p~lllLDEPt-~gLD~~~~~~l~~~l~~~-~~t 145 (211)
..+...|... .++..|||||+||++||+|++ .+|+++|||||| ++||+.++..+.+.|.++ +.+
T Consensus 454 ~~~~~~g~~~----~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~ 529 (562)
T PHA02562 454 ETIKSRGRED----FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTN 529 (562)
T ss_pred hHHhcCCCCc----cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCe
Confidence 4455555432 256899999999999999987 599999999998 789999999999999887 459
Q ss_pred EEEEecChHHHHhhCCeEEEEeC-Cce
Q psy2681 146 VILVSHDERLIRETDCELWALEK-KNI 171 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~-g~i 171 (211)
||+|||+.+.. ..++++++|.+ |+.
T Consensus 530 iiiish~~~~~-~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 530 VFVISHKDHDP-QKFDRHLKMEKVGRF 555 (562)
T ss_pred EEEEECchhch-hhhhcEEEEEEECCe
Confidence 99999997766 46799998886 544
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=111.99 Aligned_cols=73 Identities=36% Similarity=0.364 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 95 RDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
..||+||+||++||++++. +|+++|+|||++|+|+.....+.+.+.++ +.++|++||+.+... .+|+++.|.
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 4599999999999999987 78999999999999999999998888654 369999999999986 468988875
Q ss_pred C
Q psy2681 168 K 168 (211)
Q Consensus 168 ~ 168 (211)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=129.53 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 95 RDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
+.|||||+||++||++++. +|+++|||||++|||..+...+.+.|++. +.+||+|||++..+ .+||+.+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEec
Confidence 3589999999999999997 68999999999999999999999999876 36999999999877 68899999876
Q ss_pred C
Q psy2681 169 K 169 (211)
Q Consensus 169 g 169 (211)
+
T Consensus 508 ~ 508 (553)
T PRK10869 508 E 508 (553)
T ss_pred c
Confidence 4
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=128.51 Aligned_cols=107 Identities=27% Similarity=0.343 Sum_probs=88.7
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
..+.|..+||.....-++...|||||.|||-||.-|..+. -++||||||+||-..-...|++.|.++ |.|||+|
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI 881 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456778899865555688999999999999999998877 999999999999999999999998876 6799999
Q ss_pred ecChHHHHhhCCeEEEEe-----CCceeeecCChHHHHH
Q psy2681 150 SHDERLIRETDCELWALE-----KKNIRKFNGDFDDYRE 183 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~-----~g~i~~~~g~~~~~~~ 183 (211)
.|+++.+. .||.|+-|- +|+-+.+.|+++++.+
T Consensus 882 EHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 882 EHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred ecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999884 678877662 3344456899888764
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=134.95 Aligned_cols=77 Identities=27% Similarity=0.291 Sum_probs=70.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhc--------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhC
Q psy2681 92 IPIRDLSGGQKARVALAELTLN--------NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETD 160 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~~--------~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 160 (211)
+++..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+ |.+|+||||..++..++.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 4789999999999999999996 89999999999999999999999998765 579999999999999998
Q ss_pred CeEEEEeC
Q psy2681 161 CELWALEK 168 (211)
Q Consensus 161 ~~v~~l~~ 168 (211)
.++.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 88887765
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=133.67 Aligned_cols=76 Identities=38% Similarity=0.499 Sum_probs=65.9
Q ss_pred CCCCCCChHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kq------Rv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 162 (211)
+++..|||||++ |++||++++.+|+++|+||||++||+.++..+.++|..+ +.+||+||||.++. ..|++
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d~ 862 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAADY 862 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCCe
Confidence 367899999999 555666888999999999999999999999999998765 45899999999865 68999
Q ss_pred EEEEeC
Q psy2681 163 LWALEK 168 (211)
Q Consensus 163 v~~l~~ 168 (211)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999873
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-13 Score=116.88 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=67.3
Q ss_pred CCCCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC---C
Q psy2681 94 IRDLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD---C 161 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~---~ 161 (211)
.+.+|+||+|++.||++++ .+|+++|+||||++||+..+..+.+.+.+++ .+++++|+...+..+| +
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRA 259 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCc
Confidence 4568999999999999985 7999999999999999999999999998876 5677777777777776 6
Q ss_pred eEEEEeCCce
Q psy2681 162 ELWALEKKNI 171 (211)
Q Consensus 162 ~v~~l~~g~i 171 (211)
+++.+++|++
T Consensus 260 ~i~~l~~g~i 269 (270)
T cd03242 260 QIFRVDAGTL 269 (270)
T ss_pred cEEEEeCcEE
Confidence 7888988875
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=132.09 Aligned_cols=78 Identities=32% Similarity=0.474 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHH------HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cC--CeEEEEecChHHHHhhC
Q psy2681 93 PIRDLSGGQKARVAL------AELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQ--GGVILVSHDERLIRETD 160 (211)
Q Consensus 93 ~~~~LSgG~kqRv~i------aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~--~tiiivsHd~~~~~~~~ 160 (211)
++..|||||++|++| |++++.+|++++|||||++||+..+..+.+++.. .+ .+||+||||.+++ .+|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence 578999999999975 5899999999999999999999999999888763 22 3899999999987 589
Q ss_pred CeEEEEe-CCce
Q psy2681 161 CELWALE-KKNI 171 (211)
Q Consensus 161 ~~v~~l~-~g~i 171 (211)
++++.+. .|+.
T Consensus 877 d~ii~~~~~~~~ 888 (895)
T PRK01156 877 DVAYEVKKSSGS 888 (895)
T ss_pred CeEEEEEecCCe
Confidence 9999886 3443
|
|
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-14 Score=124.01 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=107.8
Q ss_pred eecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCC-------CCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 12 VLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGE-------HLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~-------~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
+|.|=+ ++|+|++ +.|+-+...|...+..+.++-|+||.|+. +..-..++.++.. .+..+++...+|.
T Consensus 512 LItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~--kg~~d~dL~~iL~ 589 (728)
T KOG0064|consen 512 LITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR--KGYTDQDLEAILD 589 (728)
T ss_pred EEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHh--cCCCHHHHHHHHH
Confidence 344555 4999999 89998889999988878889999999861 1111223333332 2334455555555
Q ss_pred hCCC----------CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEec
Q psy2681 82 MFGL----------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSH 151 (211)
Q Consensus 82 ~~gl----------~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsH 151 (211)
.+.| +...+.+ ..||||+|||+++||.+.++|+.-+|||-||+..++....+.+..+..+.+.|-|||
T Consensus 590 ~v~L~~i~qr~~g~da~~dWk--d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsith 667 (728)
T KOG0064|consen 590 IVHLEHILQREGGWDAVRDWK--DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITH 667 (728)
T ss_pred HhhHHHHHHhccChhhhccHH--hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeec
Confidence 5443 3333321 479999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHH
Q psy2681 152 DERLIR 157 (211)
Q Consensus 152 d~~~~~ 157 (211)
......
T Consensus 668 rpslwk 673 (728)
T KOG0064|consen 668 RPSLWK 673 (728)
T ss_pred CccHHH
Confidence 987764
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=137.97 Aligned_cols=69 Identities=39% Similarity=0.484 Sum_probs=62.2
Q ss_pred CCCCCChHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--------CCeEEEEecChHHHHh
Q psy2681 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--------QGGVILVSHDERLIRE 158 (211)
Q Consensus 93 ~~~~LSgG~kq------Rv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--------~~tiiivsHd~~~~~~ 158 (211)
..+.||||||| |++||+|++.+|++|+|||||+|||+.+...+.+.|..+ +.+||+||||++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 34789999999 999999999999999999999999999999888877653 4699999999999998
Q ss_pred hCC
Q psy2681 159 TDC 161 (211)
Q Consensus 159 ~~~ 161 (211)
+|.
T Consensus 1276 ~~~ 1278 (1311)
T TIGR00606 1276 LGR 1278 (1311)
T ss_pred Hhh
Confidence 863
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=117.49 Aligned_cols=162 Identities=21% Similarity=0.227 Sum_probs=117.8
Q ss_pred cCeeeeecCCC--Ccccccc-ccCc--------ccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGE--------LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK 75 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~--------~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~ 75 (211)
|.+..+. |-- ++||+++ |.|. ++|++|.|......--+.+|....+. +...|+.+.+....+ +...
T Consensus 409 GdvvaVv-GqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~-f~~~tilehl~s~tG-D~~~ 485 (593)
T COG2401 409 GDVVAVV-GQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPE-FGEVTILEHLRSKTG-DLNA 485 (593)
T ss_pred CCeEEEE-ecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccc-cCchhHHHHHhhccC-chhH
Confidence 4444455 442 5899999 8653 47888888754333233455543332 334566665543322 2344
Q ss_pred HHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEe
Q psy2681 76 SRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVS 150 (211)
Q Consensus 76 ~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~~tiiivs 150 (211)
+.++|.+.|+.+ .+.++++++||.|||.|+.||++++..|++++.||-.++||+.+...+..-|.+ .+.|++++|
T Consensus 486 AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvT 565 (593)
T COG2401 486 AVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565 (593)
T ss_pred HHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 678999999975 444567899999999999999999999999999999999999998887776654 577999999
Q ss_pred cChHHHHhh-CCeEEEEeCCce
Q psy2681 151 HDERLIRET-DCELWALEKKNI 171 (211)
Q Consensus 151 Hd~~~~~~~-~~~v~~l~~g~i 171 (211)
|+.++...+ -|.++.+.-|+.
T Consensus 566 hrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 566 HRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred cCHHHHhccCCceeEEeecccc
Confidence 999999988 577776666654
|
|
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=120.80 Aligned_cols=147 Identities=22% Similarity=0.272 Sum_probs=111.5
Q ss_pred Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-c--CCCHHHHHHHHHhCCCCCccccCC
Q psy2681 18 NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F--NLPYEKSRRQLGMFGLPSYAHTIP 93 (211)
Q Consensus 18 ~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~--~~~~~~~~~~l~~~gl~~~~~~~~ 93 (211)
.+|||++ ++|.++|++|.=. +...++|=||...+. ..-++.+.+... + ......+.+.++.+.++...+. -
T Consensus 379 gkTTfi~mlag~~~pd~~~e~--p~lnVSykpqkispK--~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dq-e 453 (592)
T KOG0063|consen 379 GKTTFIRMLAGRLKPDEGGEI--PVLNVSYKPQKISPK--REGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQ-E 453 (592)
T ss_pred chhHHHHHHhcCCCCCccCcc--cccceeccccccCcc--ccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhH-H
Confidence 5999999 9999999887321 234688888875421 233555555321 1 1234456677788888776665 6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+..||||++|||++|.+|=..+++++.|||.+.||.+.+..-...++ ..++|-.+|.||.-.+...+||+++.+.-
T Consensus 454 vq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 454 VQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred hhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 89999999999999999999999999999999999998765544444 44779999999999999999999987643
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-13 Score=112.34 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=74.2
Q ss_pred HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHHHHHH-HHHHh-cCCeEEEE
Q psy2681 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEP---TNNLDIESIDALA-EAIKN-YQGGVILV 149 (211)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral--~~~p~lllLDEP---t~gLD~~~~~~l~-~~l~~-~~~tiiiv 149 (211)
.+++.++++.+. ..+.+|.|+++++.+++++ +.+|+++||||| |++||+.+..+.. +.+.+ .+.++|++
T Consensus 74 ~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlis 149 (222)
T cd03285 74 DCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFA 149 (222)
T ss_pred ceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 456677777643 2568999999999999999 899999999999 9999999876544 56654 36799999
Q ss_pred ecChHHHHhhCCeEEEEeCCcee
Q psy2681 150 SHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
||+ ..+.++|+++..+.+|++.
T Consensus 150 TH~-~el~~~~~~~~~i~~g~~~ 171 (222)
T cd03285 150 THF-HELTALADEVPNVKNLHVT 171 (222)
T ss_pred ech-HHHHHHhhcCCCeEEEEEE
Confidence 996 6677899999888888764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-13 Score=130.90 Aligned_cols=74 Identities=30% Similarity=0.439 Sum_probs=65.7
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
.++..|||||++|++||++++ .+|+++||||||++||+.++..+.++|... +.++|+|||++.++ ..||+++.
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~~~ 1163 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQLYG 1163 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhHee
Confidence 367899999999999999985 677999999999999999999999999876 35899999999987 56899875
Q ss_pred E
Q psy2681 166 L 166 (211)
Q Consensus 166 l 166 (211)
+
T Consensus 1164 ~ 1164 (1179)
T TIGR02168 1164 V 1164 (1179)
T ss_pred e
Confidence 4
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.2e-13 Score=128.08 Aligned_cols=169 Identities=21% Similarity=0.298 Sum_probs=125.3
Q ss_pred eeeeecCCC--Ccccccc-ccCcccC---CcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHH---hhc--
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTP---NKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLM---KLF-- 69 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p---~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~---~~~-- 69 (211)
++-++.|.- +.|||++ ++|...- ..|+|+.++ ++.++|.+|+.. .++.+||.|-+. ...
T Consensus 142 ~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~Dv--H~p~lTVreTldFa~rck~~ 219 (1391)
T KOG0065|consen 142 EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDV--HFPELTVRETLDFAARCKGP 219 (1391)
T ss_pred ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccc--ccceeEEeehhhHHHhccCC
Confidence 455665663 4899999 9876633 244676543 467899999754 688899877553 211
Q ss_pred -----CCCHHH-----HHHHHHhCCCCCcccc----CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 70 -----NLPYEK-----SRRQLGMFGLPSYAHT----IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 70 -----~~~~~~-----~~~~l~~~gl~~~~~~----~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
+..+.+ .+.+++.+||+.-.+. ......|||||+||.+|-+++.+++++++||+|+|||..+.-++
T Consensus 220 ~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~i 299 (1391)
T KOG0065|consen 220 GSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQI 299 (1391)
T ss_pred ccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHH
Confidence 122222 3467999999864443 23467999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CCeEEEEecCh-HHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 136 AEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 136 ~~~l~~~----~~tiiivsHd~-~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
.+.|++. +.|.+++-|.. ..+-...|+|++|.+|.++ |.|+.++
T Consensus 300 ik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i-y~Gp~d~ 348 (1391)
T KOG0065|consen 300 IKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI-YQGPRDE 348 (1391)
T ss_pred HHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE-EeccHHH
Confidence 9998865 45777766664 5566778999999999996 5677654
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=113.82 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCCCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC--C
Q psy2681 93 PIRDLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD--C 161 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~--~ 161 (211)
+...+|.||+|++.||++++ .+|+++|+|||+++||+..+..+.+.+.+.+..++++||+.+.+...+ +
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence 34689999999999999986 799999999999999999999999999876678999999988776653 4
Q ss_pred eEEEEeCCce
Q psy2681 162 ELWALEKKNI 171 (211)
Q Consensus 162 ~v~~l~~g~i 171 (211)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 7889999876
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-12 Score=124.95 Aligned_cols=75 Identities=23% Similarity=0.257 Sum_probs=66.7
Q ss_pred CCCCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEE
Q psy2681 93 PIRDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++ +.++|++||+...+ ..||+++.+
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~~~ 1149 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAIGV 1149 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeEeE
Confidence 567899999999999999985 78999999999999999999999999886 35899999999766 688999866
Q ss_pred eC
Q psy2681 167 EK 168 (211)
Q Consensus 167 ~~ 168 (211)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 53
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=119.08 Aligned_cols=76 Identities=36% Similarity=0.538 Sum_probs=65.1
Q ss_pred CCCCCChHHHH------HHHHHHHHhcC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHhc---CC-eEEEEecChHHH
Q psy2681 93 PIRDLSGGQKA------RVALAELTLNN-----P-DILILDEPTNNLDIESIDALAEAIKNY---QG-GVILVSHDERLI 156 (211)
Q Consensus 93 ~~~~LSgG~kq------Rv~iaral~~~-----p-~lllLDEPt~gLD~~~~~~l~~~l~~~---~~-tiiivsHd~~~~ 156 (211)
++..||||||+ |++++++++.+ | +++|+||||++||+..+..+.++|..+ +. +||+||||..++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 89999998863 2 679999999999999999999988765 33 799999999998
Q ss_pred HhhCCeEEEEeCC
Q psy2681 157 RETDCELWALEKK 169 (211)
Q Consensus 157 ~~~~~~v~~l~~g 169 (211)
. .+|+++.+...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 5 68999988644
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=106.61 Aligned_cols=104 Identities=26% Similarity=0.305 Sum_probs=83.4
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc--CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.|-.+||...-..|....|||||.||+-||.-+=. --=+++||||+.||-+.--.++.+.|+++ |.|+|+|.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 45567887654456789999999999999999854 34689999999999999999888887654 77999999999
Q ss_pred HHHHhhCCeEEEEe-----CCceeeecCChHHHHH
Q psy2681 154 RLIRETDCELWALE-----KKNIRKFNGDFDDYRE 183 (211)
Q Consensus 154 ~~~~~~~~~v~~l~-----~g~i~~~~g~~~~~~~ 183 (211)
+.+. .+|.++-|- +|+-+.+.|+++++.+
T Consensus 544 dti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 544 DTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred HHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 9885 579988763 3344457899988764
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-11 Score=103.37 Aligned_cols=63 Identities=25% Similarity=0.228 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHHHhc---------CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHH
Q psy2681 95 RDLSGGQKARVALAELTLN---------NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 157 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~---------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 157 (211)
..+|.||++++.||.+++. +|+++|||||+++||+..+..+.+.|.+.+.+++++||+.+.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 4699999999999999999 99999999999999999999999999876679999999987764
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.7e-11 Score=94.55 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=59.9
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HH---HhcCCeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AI---KNYQGGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l---~~~~~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
..+.+|.+++| +..+.+++.+|+++|+||||+|+|+.....+.. ++ .+.+.++|++||+.+.+. .++++..+.+
T Consensus 88 ~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~ 165 (202)
T cd03243 88 GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVPGVKN 165 (202)
T ss_pred CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCCCeEE
Confidence 45678887776 666678889999999999999999988776543 33 334679999999988876 5567777777
Q ss_pred Ccee
Q psy2681 169 KNIR 172 (211)
Q Consensus 169 g~i~ 172 (211)
+++.
T Consensus 166 ~~~~ 169 (202)
T cd03243 166 LHME 169 (202)
T ss_pred EEEE
Confidence 7664
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-11 Score=95.57 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=53.7
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHH---h-cCCeEEEEecChHHH
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIK---N-YQGGVILVSHDERLI 156 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~---~-~~~tiiivsHd~~~~ 156 (211)
.++..+...+ ..+++|+|++|...++. .+.+|+++|+|||++|+|+.....+. .+++ + .+.++|++||+.+.
T Consensus 48 ~~~~~d~~~~-~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l- 124 (185)
T smart00534 48 RIGASDSLAQ-GLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL- 124 (185)
T ss_pred EeCCCCchhc-cccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH-
Confidence 3444444443 67889999887444433 24599999999999999999766653 3333 3 25699999999964
Q ss_pred HhhCCe
Q psy2681 157 RETDCE 162 (211)
Q Consensus 157 ~~~~~~ 162 (211)
.+.++.
T Consensus 125 ~~~~~~ 130 (185)
T smart00534 125 TKLADE 130 (185)
T ss_pred HHHhhc
Confidence 456553
|
|
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-11 Score=106.80 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=79.4
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecC
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD 152 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd 152 (211)
..++++.+.|....++ -+.+||||+-||.+||.+.+++.++.++|||.+.||+..+......|+.+ ..-||+|.||
T Consensus 194 ~~~~~~~~~L~~~~~r-e~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHD 272 (592)
T KOG0063|consen 194 KEEVCDQLDLNNLLDR-EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHD 272 (592)
T ss_pred HHHHHHHHHHhhHHHh-hhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence 3456777777766654 68999999999999999999999999999999999999998888888776 4579999999
Q ss_pred hHHHHhhCCeEEEEeC
Q psy2681 153 ERLIRETDCELWALEK 168 (211)
Q Consensus 153 ~~~~~~~~~~v~~l~~ 168 (211)
+..+....|-+.++-.
T Consensus 273 LsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 273 LSVLDYLSDFICCLYG 288 (592)
T ss_pred chHHHhhhcceeEEec
Confidence 9999999888877753
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=92.40 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred eeeeecCCC--Ccccccc-ccCcccC-CcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC---CHHHHHHHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTP-NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRRQLG 81 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p-~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~---~~~~~~~~l~ 81 (211)
++-+|.|-+ ++|||+| ++|.... ..|.-... -++++|. ..+++.+++.+++...... ...++.++++
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a----~~~~~q~--~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~ 99 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA----SSFELPP--VKIFTSIRVSDDLRDGISYFYAELRRLKEIVE 99 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEec----CccCccc--ceEEEeccchhccccccChHHHHHHHHHHHHH
Confidence 444566775 5999999 8876642 23321111 1355663 2467777777765321111 0122333444
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHH---hcCCeEEEEecChHHHH
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIK---NYQGGVILVSHDERLIR 157 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~---~~~~tiiivsHd~~~~~ 157 (211)
.+++ .+|+++|+||||+|+|+.....+. .+++ +.+.++|++||+++.+.
T Consensus 100 ~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~ 152 (199)
T cd03283 100 KAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD 152 (199)
T ss_pred hccC---------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence 4331 699999999999999999877553 3443 34679999999999987
Q ss_pred hh
Q psy2681 158 ET 159 (211)
Q Consensus 158 ~~ 159 (211)
..
T Consensus 153 ~~ 154 (199)
T cd03283 153 LL 154 (199)
T ss_pred hh
Confidence 65
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=93.23 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=60.6
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH----HHHHHHhcCCeEEEEecCh
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~----l~~~l~~~~~tiiivsHd~ 153 (211)
+++..++..+...+ ..+.+|+|++|+ ..+.+++.+|+++|+|||++|+|+..... +.+.+.+.+.++|++||+.
T Consensus 74 ~I~~~~~~~d~~~~-~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 74 RLLSRLSNDDSMER-NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred heeEecCCccccch-hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 34555666554443 678999999976 45566889999999999999999976443 3344444578999999999
Q ss_pred HHHHhhC
Q psy2681 154 RLIRETD 160 (211)
Q Consensus 154 ~~~~~~~ 160 (211)
+++...+
T Consensus 152 ~l~~~~~ 158 (204)
T cd03282 152 DIAAILG 158 (204)
T ss_pred HHHHHhh
Confidence 9987665
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-10 Score=90.55 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=81.8
Q ss_pred eeeeecCCC--Ccccccc-cc--CcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhC
Q psy2681 9 RIAVLQGLR--NPLSFIK-PK--GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 83 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~--G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~ 83 (211)
|.-+|.|-+ ++|||+| +. +.+ +..|.........++|+.|... .+....++.+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~-~l~~~~si~~-------------------- 87 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFT-RMSSRESVSS-------------------- 87 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeee-eeCCccChhh--------------------
Confidence 667777887 5999999 75 333 6677776666667888877532 2222222211
Q ss_pred CCCCccccCCCCCCC--hHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH-HHHHHHHhc------CCeEEEEecChH
Q psy2681 84 GLPSYAHTIPIRDLS--GGQKARVALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNY------QGGVILVSHDER 154 (211)
Q Consensus 84 gl~~~~~~~~~~~LS--gG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~-~l~~~l~~~------~~tiiivsHd~~ 154 (211)
.+| .-+-||++++++++.+|.++|+|||++|+|+.... .+...++++ +.++|++||+.+
T Consensus 88 ------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 88 ------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred ------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 122 34668999999999999999999999999996533 333444432 138999999999
Q ss_pred HHHhhC
Q psy2681 155 LIRETD 160 (211)
Q Consensus 155 ~~~~~~ 160 (211)
.+....
T Consensus 156 l~~~~~ 161 (213)
T cd03281 156 LFNRSL 161 (213)
T ss_pred HHHhhh
Confidence 987653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-10 Score=108.39 Aligned_cols=76 Identities=33% Similarity=0.466 Sum_probs=63.8
Q ss_pred CCCCCCChHHHHHHHHHHHH------hcC--CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhC
Q psy2681 92 IPIRDLSGGQKARVALAELT------LNN--PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETD 160 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral------~~~--p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~ 160 (211)
+++..||||++-.++||-+| ..+ -+++||||||.+||+.+...+.+.|.+. +.+|+||||+.++...+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~- 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERA- 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhC-
Confidence 58899999999887777666 356 7999999999999999999999998765 46999999999998655
Q ss_pred CeEEEEeC
Q psy2681 161 CELWALEK 168 (211)
Q Consensus 161 ~~v~~l~~ 168 (211)
+.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 66666654
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-10 Score=113.23 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=56.1
Q ss_pred CCCCCChHHHHHHH----HHHH--------HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 93 PIRDLSGGQKARVA----LAEL--------TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 93 ~~~~LSgG~kqRv~----iara--------l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
+++.||||||||++ +|++ +..+|++++|||||+|||+.++..+++++.+++.++||+||.+.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchh
Confidence 56899999999996 5655 45899999999999999999999999999999999999999864
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-09 Score=84.91 Aligned_cols=86 Identities=29% Similarity=0.413 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeE
Q psy2681 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGV 146 (211)
Q Consensus 73 ~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~ti 146 (211)
...+.+.+..+++.. ..||||||..++||.-| ..+.++++||||.++||...+..+.++|++.. .-+
T Consensus 120 ~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ 192 (220)
T PF02463_consen 120 LKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF 192 (220)
T ss_dssp HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred ccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445666777766642 38999999999998665 36789999999999999999999999999885 589
Q ss_pred EEEecChHHHHhhCCeEEEE
Q psy2681 147 ILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l 166 (211)
|++||+....... ++.+.+
T Consensus 193 ii~Th~~~~~~~a-~~~~~v 211 (220)
T PF02463_consen 193 IITTHNPEMFEDA-DKLIGV 211 (220)
T ss_dssp EEE-S-HHHHTT--SEEEEE
T ss_pred ccccccccccccc-cccccc
Confidence 9999998888654 676644
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=88.97 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=49.7
Q ss_pred HHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHH-HHHHHHHHhc-CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 101 QKARVALAELT--LNNPDILILDEP---TNNLDIESI-DALAEAIKNY-QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 101 ~kqRv~iaral--~~~p~lllLDEP---t~gLD~~~~-~~l~~~l~~~-~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
+..+..+++++ +.+|+++|+||| |+++|..+. ..+.+.+.+. +.++|++||+.++ .++++++..+.++.+
T Consensus 94 ~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~~~v~~~~~ 170 (216)
T cd03284 94 MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL-TELEGKLPRVKNFHV 170 (216)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH-HHHhhcCCCeEEEEE
Confidence 33344455555 579999999999 999998763 5567777776 7899999999754 456666544555544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-09 Score=85.08 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=76.1
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDE--PTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
+...+|++++-+..+++..+.+|+++++|| |+.++|+...+.+.+.+ +.+.++|+++|+. .+...++++..+.+|+
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQEIKSRPGGR 152 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHHHhccCCcE
Confidence 456899999999999999999999999999 77788888777788887 6688999999995 5556779999999999
Q ss_pred eeeec-CChHHHHHHHHHHh
Q psy2681 171 IRKFN-GDFDDYREKLLTSL 189 (211)
Q Consensus 171 i~~~~-g~~~~~~~~~~~~~ 189 (211)
++... .+.+.+.+..++.+
T Consensus 153 i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 153 VYELTPENRDSLPFEILNRL 172 (174)
T ss_pred EEEEcchhhhhHHHHHHHHH
Confidence 87653 34455555555443
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-10 Score=106.16 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=53.5
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHH---hcCCeEEEEecChHHHH
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIK---NYQGGVILVSHDERLIR 157 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~---~~~~tiiivsHd~~~~~ 157 (211)
.++.||+||++++.|++++ .+|.++|+|||++|+|+.....+. .++. +.+.++|++||+.++..
T Consensus 382 ~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 382 NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 4678999999999998876 899999999999999999988774 3443 34679999999987643
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=93.53 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEE
Q psy2681 95 RDLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
..+|+||++++.+|..|+ .+|+++|||||+++||...+.++.+.|.....++|-.|+ ....+++++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~----~~~~~~~~~~ 337 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE----APPGAALTLR 337 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC----CCCCCceEEE
Confidence 468999999999999999 899999999999999999999999999765544444343 3456789999
Q ss_pred EeCCcee
Q psy2681 166 LEKKNIR 172 (211)
Q Consensus 166 l~~g~i~ 172 (211)
+.+|++.
T Consensus 338 ~~~~~~~ 344 (349)
T PRK14079 338 IEAGVFT 344 (349)
T ss_pred EeccEec
Confidence 9888764
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-09 Score=88.93 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=72.7
Q ss_pred eeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCC
Q psy2681 10 IAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 87 (211)
Q Consensus 10 ~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~ 87 (211)
+.+++.-. ++|||++ ++|.++|++|++...++ .+..+. ...+........+... +|.
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~-~v~~~d-----------~~~ei~~~~~~~~q~~-------~~~-- 172 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILSTGISQLGLRGK-KVGIVD-----------ERSEIAGCVNGVPQHD-------VGI-- 172 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCCCCceEEECCE-Eeecch-----------hHHHHHHHhccccccc-------ccc--
Confidence 34443332 5999999 99999999999987643 232110 0011111000000000 000
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH--H---------
Q psy2681 88 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL--I--------- 156 (211)
Q Consensus 88 ~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~--~--------- 156 (211)
+...|.+=.|.....+.+.+.+|+++++|||++. +....+.+.+. .+.++|++||+... +
T Consensus 173 -----r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l 243 (270)
T TIGR02858 173 -----RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDVEDLYKRPVFKEL 243 (270)
T ss_pred -----cccccccchHHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHHHHHHhChHHHHH
Confidence 1111222122222234444479999999999853 33444444443 37799999997655 4
Q ss_pred --HhhCCeEEEEeCCc
Q psy2681 157 --RETDCELWALEKKN 170 (211)
Q Consensus 157 --~~~~~~v~~l~~g~ 170 (211)
..+++++++|.+++
T Consensus 244 ~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 244 IENEAFERYVVLSRRK 259 (270)
T ss_pred HhcCceEEEEEEecCC
Confidence 36689999998765
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-09 Score=98.75 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=63.3
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-HH---HhcCCeEEEEecChHHHH
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AI---KNYQGGVILVSHDERLIR 157 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-~l---~~~~~tiiivsHd~~~~~ 157 (211)
.+|-+..... .++.+|+||+|++.|++++ .+|.++|+|||++|+|+.....+.. ++ .+.+.++|++||+.+...
T Consensus 377 ~ig~~~si~~-~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~ 454 (782)
T PRK00409 377 DIGDEQSIEQ-SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKA 454 (782)
T ss_pred ecCCccchhh-chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHH
Confidence 3444333333 5788999999999999988 8999999999999999988776643 33 344679999999998887
Q ss_pred hhCCeEEE
Q psy2681 158 ETDCELWA 165 (211)
Q Consensus 158 ~~~~~v~~ 165 (211)
..+++..+
T Consensus 455 ~~~~~~~v 462 (782)
T PRK00409 455 LMYNREGV 462 (782)
T ss_pred HHhcCCCe
Confidence 66655443
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=81.90 Aligned_cols=64 Identities=33% Similarity=0.508 Sum_probs=52.2
Q ss_pred CCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHH
Q psy2681 93 PIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLI 156 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~ 156 (211)
+...+|.|++|.+.|+.++...+ .++++|||-++|.|..+..+.++|.+. +.-+|++||.+.++
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45677999999999988888766 899999999999999999999999865 35899999998764
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.70 E-value=4e-08 Score=77.61 Aligned_cols=75 Identities=8% Similarity=0.044 Sum_probs=59.6
Q ss_pred CCCCCChHHHH------HHHHHHHHhcCCCeEEEeCCCCCCC---HHHHHHHHHHHH---hcCCeEEEEecChHH-----
Q psy2681 93 PIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIK---NYQGGVILVSHDERL----- 155 (211)
Q Consensus 93 ~~~~LSgG~kq------Rv~iaral~~~p~lllLDEPt~gLD---~~~~~~l~~~l~---~~~~tiiivsHd~~~----- 155 (211)
++..+|+|++| +.....+...+|+++++|||++.+| ......+.+++. +.+.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 56789999998 5555555678999999999999999 666666665554 457799999998765
Q ss_pred ----HHhhCCeEEEEe
Q psy2681 156 ----IRETDCELWALE 167 (211)
Q Consensus 156 ----~~~~~~~v~~l~ 167 (211)
+..++|.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 678888888876
|
A related protein is found in archaea. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.8e-08 Score=68.60 Aligned_cols=49 Identities=35% Similarity=0.510 Sum_probs=37.8
Q ss_pred CCCCCChHHHHH-HHHHHH--H----hc------CCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 93 PIRDLSGGQKAR-VALAEL--T----LN------NPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 93 ~~~~LSgG~kqR-v~iara--l----~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
..+.+||||||. +.++.+ + .. .|.+++|||||++||+.....+++++++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 678999999954 333333 2 22 4799999999999999999999999864
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-07 Score=75.52 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=43.8
Q ss_pred CCCCChH--HHHHHHHHHHHhcCCCeEEEeCCC-----CCCCHHHHHHHHHHHHhc
Q psy2681 94 IRDLSGG--QKARVALAELTLNNPDILILDEPT-----NNLDIESIDALAEAIKNY 142 (211)
Q Consensus 94 ~~~LSgG--~kqRv~iaral~~~p~lllLDEPt-----~gLD~~~~~~l~~~l~~~ 142 (211)
++..||+ +++++.||++++.+|+++++|||| ++||+.++..+.+.++++
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 3445554 889999999999999999999999 999999999999999875
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.8e-07 Score=73.68 Aligned_cols=75 Identities=19% Similarity=0.091 Sum_probs=62.1
Q ss_pred CCCChHH--------HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH--HHHHHHHhcCCeEEEEecChHHHHhhCCeEE
Q psy2681 95 RDLSGGQ--------KARVALAELTLNNPDILILDEPTNNLDIESID--ALAEAIKNYQGGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 95 ~~LSgG~--------kqRv~iaral~~~p~lllLDEPt~gLD~~~~~--~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~ 164 (211)
..+|||+ +||+++||++..++++.+| ||+.+|..+.. -+.+.++....|+|++||.+.....+ +.|.
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~-paI~ 204 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIF-PAID 204 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCC-CeEE
Confidence 3479999 9999999999999999999 99999963332 34566665567999999999998654 8999
Q ss_pred EEeCCcee
Q psy2681 165 ALEKKNIR 172 (211)
Q Consensus 165 ~l~~g~i~ 172 (211)
+|..|.+.
T Consensus 205 vl~s~sr~ 212 (249)
T cd01128 205 ILKSGTRK 212 (249)
T ss_pred EcCCCCcc
Confidence 99999874
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.7e-06 Score=78.53 Aligned_cols=65 Identities=26% Similarity=0.293 Sum_probs=50.1
Q ss_pred CCCCCChHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHH-HHHhcCCeEEEEecChHHHHh
Q psy2681 93 PIRDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAE-AIKNYQGGVILVSHDERLIRE 158 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~------~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~tiiivsHd~~~~~~ 158 (211)
++..|||||+|-++||..++. ..++ ++||||+.||...+..+.. ++.....-||+.|||-++-..
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~~~ 619 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVDEK 619 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhCHH
Confidence 567899999999766655432 4556 5699999999999999874 776666678889999766543
|
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=77.65 Aligned_cols=61 Identities=23% Similarity=0.171 Sum_probs=52.6
Q ss_pred hcCCCeEEEeCCCCCC-CHHHHHHHHHHHHh---cCCeEEEEecChHHHH---------hhCCeEEEEeCCcee
Q psy2681 112 LNNPDILILDEPTNNL-DIESIDALAEAIKN---YQGGVILVSHDERLIR---------ETDCELWALEKKNIR 172 (211)
Q Consensus 112 ~~~p~lllLDEPt~gL-D~~~~~~l~~~l~~---~~~tiiivsHd~~~~~---------~~~~~v~~l~~g~i~ 172 (211)
..+|+++++|||+.+| |+.....+.+.++. .+.+++++||+++.+. ..|+.+++|.++++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~ 723 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR 723 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence 5799999999999999 68988888888764 4679999999999886 578888999998764
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=64.30 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=47.1
Q ss_pred CCCh--HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH----HHhc-CCeEEEEecChHHHHhhC
Q psy2681 96 DLSG--GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA----IKNY-QGGVILVSHDERLIRETD 160 (211)
Q Consensus 96 ~LSg--G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~----l~~~-~~tiiivsHd~~~~~~~~ 160 (211)
.+|. .+-+++.-+...+.+|.++|+|||++|+++.....+... +.+. +.++|++||+.+++...+
T Consensus 89 ~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 89 GESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 3454 344455444455689999999999999999876655444 3333 678999999999988765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG4637 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.5e-05 Score=65.17 Aligned_cols=70 Identities=36% Similarity=0.522 Sum_probs=61.3
Q ss_pred CCCChHHHHHHHHHHHHhc--CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEEEecChHHHHhhCCeEE
Q psy2681 95 RDLSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHDERLIRETDCELW 164 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~--~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--tiiivsHd~~~~~~~~~~v~ 164 (211)
.+||-|+-+-+++|.+|.. .|.++++|||-++|-|.....+..++.+..+ -||++||..+++..+--+-+
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v 342 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSV 342 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccce
Confidence 4899999999999999985 7999999999999999999999999987643 89999999999876644333
|
|
| >PF13175 AAA_15: AAA ATPase domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.7e-05 Score=68.59 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=53.0
Q ss_pred CCCCCCChHHHHHHHHHHHHh------cC-CC---eEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHH
Q psy2681 92 IPIRDLSGGQKARVALAELTL------NN-PD---ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERL 155 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~------~~-p~---lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~ 155 (211)
-++..+|.|.++.+.|+..+. .+ +. ++++|||-++|.|..+..+.+.|.++ +..||++||.+.+
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 367899999999888776652 22 22 99999999999999999999999875 3589999999865
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.8e-05 Score=61.26 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=65.2
Q ss_pred eecCCC--Ccccccc-ccC-cccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCC
Q psy2681 12 VLQGLR--NPLSFIK-PKG-ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 87 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G-~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~ 87 (211)
+|.|-+ ++||+++ +++ .+.+..|...+.....++|+.|- +.. ++-.+
T Consensus 35 ~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i-----~~~------------------------~~~~d 85 (222)
T cd03287 35 IITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV-----LTR------------------------MGASD 85 (222)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE-----EEE------------------------ecCcc
Confidence 344543 5888888 777 66777777665544445544331 111 11111
Q ss_pred ccccCCCCCCCh--HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH----HHHHHHHhc-CCeEEEEecChHHHH
Q psy2681 88 YAHTIPIRDLSG--GQKARVALAELTLNNPDILILDEPTNNLDIESID----ALAEAIKNY-QGGVILVSHDERLIR 157 (211)
Q Consensus 88 ~~~~~~~~~LSg--G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~----~l~~~l~~~-~~tiiivsHd~~~~~ 157 (211)
. ....+|- .+-+++.-+..-+.+|.++|+|||.+|.|+.... .+.+.+.+. +.++|++||+.+...
T Consensus 86 ~----~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 86 S----IQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred c----cccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 0 1112332 2333333333446789999999997777754433 345555555 669999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0962|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.7e-05 Score=75.65 Aligned_cols=65 Identities=43% Similarity=0.573 Sum_probs=53.7
Q ss_pred CCCChHHH------HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--------CCeEEEEecChHHHHhh
Q psy2681 95 RDLSGGQK------ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--------QGGVILVSHDERLIRET 159 (211)
Q Consensus 95 ~~LSgG~k------qRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--------~~tiiivsHd~~~~~~~ 159 (211)
+--|.||| =|+|+|=.+..++.+|-|||||++||..+..-+...+.+. +--.|++|||..|+..+
T Consensus 1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i 1260 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLL 1260 (1294)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHh
Confidence 45799999 5888999999999999999999999999987766655322 23788999999998754
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=64.61 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=91.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 79 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~ 79 (211)
+.+..|.++.++++-. .+|||++ ++|..+|+.|.+. ++.+.. ..+.+++...
T Consensus 151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~--------~iGerg-------~ev~e~~~~~----------- 204 (432)
T PRK06793 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVIS--------LVGERG-------REVKDFIRKE----------- 204 (432)
T ss_pred ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEE--------eCCCCc-------ccHHHHHHHH-----------
Confidence 5677888999996664 5899999 9999988776442 333321 3445554321
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHh-------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-------NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~-------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
+..-|+....--....+.|.|+|+|++.+.+.+ .++-++++|+||++.|+. .++...+.+. +.+..+.
T Consensus 205 l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~ 282 (432)
T PRK06793 205 LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLME 282 (432)
T ss_pred hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeee
Confidence 111122210000135789999999999999888 899999999999999986 5555555544 3477778
Q ss_pred ecChHHHHhhCCeEEEEeCCcee
Q psy2681 150 SHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
||...++++.+. ..+|.+.
T Consensus 283 s~l~~L~ERag~----~~~GSiT 301 (432)
T PRK06793 283 SYMKKLLERSGK----TQKGSIT 301 (432)
T ss_pred ccchhHHHHhcc----CCCcceE
Confidence 886666666542 3577664
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=58.63 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=53.4
Q ss_pred CCCChHHHHHHHHHHHHhc--CCCeEEEeCCCCC---CCHHHHHHHHHHHH---hcCCeEEEEecChHH-------HHhh
Q psy2681 95 RDLSGGQKARVALAELTLN--NPDILILDEPTNN---LDIESIDALAEAIK---NYQGGVILVSHDERL-------IRET 159 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~--~p~lllLDEPt~g---LD~~~~~~l~~~l~---~~~~tiiivsHd~~~-------~~~~ 159 (211)
...|.++++.+..+..++. +|+++++||||+. .|......+.+.++ +.+.|+++++|+... +..+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3467899999999999987 9999999999964 44555555544453 346799999997654 4556
Q ss_pred CCeEEEEe
Q psy2681 160 DCELWALE 167 (211)
Q Consensus 160 ~~~v~~l~ 167 (211)
+|-++.|.
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 66666665
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=60.70 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCC----CHHHHHHHHHHHHhc---CCeEEEEecChHHH--------
Q psy2681 96 DLSGGQKARVALAELTL----NNPDILILDEPTNNL----DIESIDALAEAIKNY---QGGVILVSHDERLI-------- 156 (211)
Q Consensus 96 ~LSgG~kqRv~iaral~----~~p~lllLDEPt~gL----D~~~~~~l~~~l~~~---~~tiiivsHd~~~~-------- 156 (211)
.+|+++.++-.+.+.+. .+|+++++||||+++ |+.....+.++++.+ +.|+ ++||+....
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~ 173 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTIL 173 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeE
Confidence 46777665555554443 369999999999999 888778888887654 4444 556765542
Q ss_pred HhhCCeEEEEe
Q psy2681 157 RETDCELWALE 167 (211)
Q Consensus 157 ~~~~~~v~~l~ 167 (211)
..++|-++.|+
T Consensus 174 ~~~~DgvI~L~ 184 (230)
T PRK08533 174 RTAATMLIRLE 184 (230)
T ss_pred EEeeeEEEEEE
Confidence 33445555554
|
|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00015 Score=72.63 Aligned_cols=71 Identities=28% Similarity=0.370 Sum_probs=61.0
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHHhhCCeEE
Q psy2681 93 PIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~v~ 164 (211)
.+..||||||-.++||..|+ ...++.+|||-=++||..+...+.++|++.. .-.|+|||....... +++.+
T Consensus 1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~-ad~l~ 1139 (1163)
T COG1196 1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEA-ADRLV 1139 (1163)
T ss_pred chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHH-HHHHe
Confidence 45679999999999988874 6889999999999999999999999999874 469999999877754 46664
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00017 Score=70.07 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=45.0
Q ss_pred HHHHHhcCCCeEEEeCCCCCC-CHHHHHHHHHHHH---hcCCeEEEEecChHHHHh
Q psy2681 107 LAELTLNNPDILILDEPTNNL-DIESIDALAEAIK---NYQGGVILVSHDERLIRE 158 (211)
Q Consensus 107 iaral~~~p~lllLDEPt~gL-D~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~ 158 (211)
|++++..+|+++++|||+.+| |+..+..+.+.++ +.+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677888999999999999999 7888888877775 446799999999998875
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00056 Score=54.72 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=64.8
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
.....|.||-=---+.+. .++.-++|||||-++|.|.-+..++..|+++ |.-+||+||.+-++.---.+|+-+..+
T Consensus 126 sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 126 SLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred chhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecC
Confidence 457889999755444444 4567899999999999999999999998876 568999999998887777888888888
Q ss_pred cee
Q psy2681 170 NIR 172 (211)
Q Consensus 170 ~i~ 172 (211)
++.
T Consensus 205 g~~ 207 (233)
T COG3910 205 GIE 207 (233)
T ss_pred Ccc
Confidence 764
|
|
| >KOG0933|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=6.5e-05 Score=71.88 Aligned_cols=62 Identities=32% Similarity=0.470 Sum_probs=51.4
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChH
Q psy2681 93 PIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDER 154 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~ 154 (211)
..++||||||-.|||+..|+ ..++++||||--++||....+.|-.+|+.. +.-.|+||=---
T Consensus 1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeG 1146 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEG 1146 (1174)
T ss_pred HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhh
Confidence 56899999999998876553 688999999999999999999999999864 346777775433
|
|
| >KOG0964|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=8.2e-05 Score=71.01 Aligned_cols=72 Identities=28% Similarity=0.402 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC--eEEEEecChHHHHhhCCeEEEE
Q psy2681 94 IRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--tiiivsHd~~~~~~~~~~v~~l 166 (211)
+.+||||||--||||..++ -.++++||||--++||+..+..+.++|+++.. -.|.+|-.++++ .++|.++-+
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll-~vAdKfygV 1172 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELL-SVADKFYGV 1172 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHH-HHHHhhhce
Confidence 4589999999999998885 46799999999999999999999999998843 466666666555 678888743
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00084 Score=60.49 Aligned_cols=147 Identities=10% Similarity=0.052 Sum_probs=86.9
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------------CeEEEEEeCCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------------RLRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------------~~~ig~v~q~~~~~l~~~~t 60 (211)
+.+..+.++.++++-. .+|||++ ++|...|+.|.+...+ ++.+.++.+... .+
T Consensus 153 ~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~---~~--- 226 (438)
T PRK07721 153 LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ---PA--- 226 (438)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC---CH---
Confidence 3566788999996554 5899999 9999999998875311 234555543221 00
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCCh-HHHHH-HHHHHHHhcCCCeEEEeCC--CCCCCHHHHHHHH
Q psy2681 61 PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG-GQKAR-VALAELTLNNPDILILDEP--TNNLDIESIDALA 136 (211)
Q Consensus 61 ~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg-G~kqR-v~iaral~~~p~lllLDEP--t~gLD~~~~~~l~ 136 (211)
+..+...+. .-.+.+++..-|-+-.. -..+++- -|-+| +++ .+.|| |+|+|+.....+.
T Consensus 227 ~~r~~~~~~---a~~iAEyfr~~g~~Vll---~~Dsltr~A~A~rEisl-----------~~ge~P~~~G~dp~~~~~l~ 289 (438)
T PRK07721 227 LMRIKGAYT---ATAIAEYFRDQGLNVML---MMDSVTRVAMAQREIGL-----------AVGEPPTTKGYTPSVFAILP 289 (438)
T ss_pred HHHHHHHHH---HHHHHHHHHHCCCcEEE---EEeChHHHHHHHHHHHH-----------hcCCCCccccCCHHHHHHHH
Confidence 111111000 01122333322422111 1223332 22222 111 12343 7899999999999
Q ss_pred HHHHhcC----C------eEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 137 EAIKNYQ----G------GVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 137 ~~l~~~~----~------tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+++.+.+ + ||++.+||++. .+|+++..+.+|+++.
T Consensus 290 ~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 290 KLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVL 334 (438)
T ss_pred HHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEE
Confidence 9987653 2 89999999984 7899999999999863
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00023 Score=58.83 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=34.4
Q ss_pred HHhcCCCeEEEeCCCCC------CCHHHHHHHHHHHHh----cCCeEEEEecChH
Q psy2681 110 LTLNNPDILILDEPTNN------LDIESIDALAEAIKN----YQGGVILVSHDER 154 (211)
Q Consensus 110 al~~~p~lllLDEPt~g------LD~~~~~~l~~~l~~----~~~tiiivsHd~~ 154 (211)
+...+|+++++| |++. +|+.....+.+.|.+ .+.+||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346899999999 8764 688888877777644 4679999999864
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PF13166 AAA_13: AAA domain | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00097 Score=63.42 Aligned_cols=67 Identities=28% Similarity=0.477 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHHHH--hc-------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C--CeEEEEecChHHHHh
Q psy2681 93 PIRDLSGGQKARVALAELT--LN-------NPDILILDEPTNNLDIESIDALAEAIKNY---Q--GGVILVSHDERLIRE 158 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral--~~-------~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~--~tiiivsHd~~~~~~ 158 (211)
+...||-|||.-+++|-=| +. +..++++|-|-|+||...+..+...|.+. . .-|||-|||+.+...
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~ 576 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE 576 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence 4578999999999987533 23 67899999999999999999999999876 3 479999999988764
Q ss_pred h
Q psy2681 159 T 159 (211)
Q Consensus 159 ~ 159 (211)
+
T Consensus 577 l 577 (712)
T PF13166_consen 577 L 577 (712)
T ss_pred H
Confidence 4
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0018 Score=48.99 Aligned_cols=62 Identities=21% Similarity=0.070 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEEEeCCCCC----------CCHHHHHHHHHHHH---hcCCeEEEEecChHHHH
Q psy2681 96 DLSGGQKARVALAELTLNNPDILILDEPTNN----------LDIESIDALAEAIK---NYQGGVILVSHDERLIR 157 (211)
Q Consensus 96 ~LSgG~kqRv~iaral~~~p~lllLDEPt~g----------LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~ 157 (211)
..+.+..+++..+++...+|+++++|||++- .|......+.+++. +.+.|+|+++|......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 4456666778889999999999999999954 44444555555543 34679999999876553
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0017 Score=56.92 Aligned_cols=76 Identities=25% Similarity=0.240 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCC---e
Q psy2681 95 RDLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC---E 162 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~---~ 162 (211)
...|-||++-+++|.-|+ ..++|||||+-++.||..-+..+++. .+.+.-+++++-+.+.+...-. +
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~~~Q~fvT~t~~~~~~~~~~~~~~ 352 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IELGVQVFVTTTDLEDIDDNLDENAQ 352 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cccCCeEEEEccCHHHhhhhhhccce
Confidence 469999999998887664 67899999999999999999999999 6667667777777777763333 6
Q ss_pred EEEEeCCce
Q psy2681 163 LWALEKKNI 171 (211)
Q Consensus 163 v~~l~~g~i 171 (211)
++.+.+|++
T Consensus 353 ~f~V~~g~i 361 (363)
T COG1195 353 MFHVEDGKI 361 (363)
T ss_pred EEEEeccee
Confidence 777788876
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0045 Score=60.32 Aligned_cols=79 Identities=23% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc--CCCeEEEeCC---CCCCCHHHH-HHHHHHHHhc-CCeEEEEe
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN--NPDILILDEP---TNNLDIESI-DALAEAIKNY-QGGVILVS 150 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~--~p~lllLDEP---t~gLD~~~~-~~l~~~l~~~-~~tiiivs 150 (211)
.++.++|-.+. ....+|--|.....++.++-. ++.++|+||| |+.+|..+. ..+.+.+.+. +.++|++|
T Consensus 652 ~I~triga~d~----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aT 727 (854)
T PRK05399 652 RIFTRIGASDD----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFAT 727 (854)
T ss_pred eeeeccCcccc----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEe
Confidence 34455554432 345688888888888888765 9999999999 999997663 3466666665 46899999
Q ss_pred cChHHHHhhCC
Q psy2681 151 HDERLIRETDC 161 (211)
Q Consensus 151 Hd~~~~~~~~~ 161 (211)
|+.+.. .+++
T Consensus 728 H~~el~-~l~~ 737 (854)
T PRK05399 728 HYHELT-ELEE 737 (854)
T ss_pred chHHHH-HHhh
Confidence 995544 4444
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.003 Score=61.21 Aligned_cols=47 Identities=30% Similarity=0.221 Sum_probs=38.3
Q ss_pred HhcCCCeEEEeCCCCCCC-HHHHHHHHHHHH---hcCCeEEEEecChHHHH
Q psy2681 111 TLNNPDILILDEPTNNLD-IESIDALAEAIK---NYQGGVILVSHDERLIR 157 (211)
Q Consensus 111 l~~~p~lllLDEPt~gLD-~~~~~~l~~~l~---~~~~tiiivsHd~~~~~ 157 (211)
+-.+|+++++|||+.+|| +.....+.+.++ +.+.+++++||++..+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID 682 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence 346899999999999999 676777777664 45779999999998665
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=96.72 E-value=9.4e-05 Score=67.48 Aligned_cols=76 Identities=9% Similarity=0.042 Sum_probs=52.0
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHH--HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---hcCCeEEEEecChHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALA--ELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDERL 155 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~ia--ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~---~~~~tiiivsHd~~~ 155 (211)
+.+++++..++ ....+|+|++|||.|+ .++...|+.. +..+..+.++++ +.+.|+|++||+.+.
T Consensus 101 ~~~~l~~~l~~-i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 101 GGFDLSALIER-INYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred ccCCHHHHHHH-HHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 34455444443 5678999999999999 5665555444 355666666554 447899999998764
Q ss_pred ---------HHhhCCeEEEEe
Q psy2681 156 ---------IRETDCELWALE 167 (211)
Q Consensus 156 ---------~~~~~~~v~~l~ 167 (211)
.+.++|.|+.|+
T Consensus 170 ~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 170 YGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ccccccCCceeEeeeeEEEEE
Confidence 266788888776
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >KOG0996|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0023 Score=62.51 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=59.7
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
+.+..||||+|-.-+||..++ ...+++++||--++||..+...+..+|++. +.-.||||=.-+. .++++|.+-
T Consensus 1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnM-FELa~rLvG 1269 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNM-FELANRLVG 1269 (1293)
T ss_pred hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhH-HHHHhhhee
Confidence 468999999999988888776 467999999999999999999999999976 3457777764444 356788775
Q ss_pred E
Q psy2681 166 L 166 (211)
Q Consensus 166 l 166 (211)
+
T Consensus 1270 I 1270 (1293)
T KOG0996|consen 1270 I 1270 (1293)
T ss_pred e
Confidence 4
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0075 Score=58.38 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=40.3
Q ss_pred HHhcCCCeEEEeCCCCCCC-HHHHHHHHHHHH---hcCCeEEEEecChHHHHh
Q psy2681 110 LTLNNPDILILDEPTNNLD-IESIDALAEAIK---NYQGGVILVSHDERLIRE 158 (211)
Q Consensus 110 al~~~p~lllLDEPt~gLD-~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~ 158 (211)
.+..+|.++++|||...|| +.....+.+.++ +.++.++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 3457999999999999999 777777777765 457799999999987654
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0019 Score=51.27 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHH--HHhhCCeEEEEeCCc
Q psy2681 99 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERL--IRETDCELWALEKKN 170 (211)
Q Consensus 99 gG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~--~~~~~~~v~~l~~g~ 170 (211)
.|+-+|..||.++..+|+.+..+| +.+||.....+.+.+.+. +.+|++.+|.+.. +...||.++++..+.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 388999999999999999998887 889999999999998765 2489999999865 677899999887663
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.029 Score=51.80 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHHh--cC--CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHHhhCCeEEEEeC
Q psy2681 95 RDLSGGQKARVALAELTL--NN--PDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEK 168 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~--~~--p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~v~~l~~ 168 (211)
+..||||--|++||.-.+ .. .+.|||||--+|+--.....+-+.|++++ .-||.|||-+..+.. ++.-+.+.+
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~-ad~H~~V~K 508 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAM-ADTHFLVEK 508 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhh-hcceEEEEE
Confidence 568999999999887554 33 55999999999999999999999999985 479999998877765 455555543
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.007 Score=52.52 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=35.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHh
Q psy2681 118 LILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRE 158 (211)
Q Consensus 118 llLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~ 158 (211)
+++|||+.+||+.++..+++.|.+. +.++|++||+.+.+..
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLP 158 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChH
Confidence 5578999999999999999999987 4689999999886653
|
|
| >KOG0018|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0084 Score=58.29 Aligned_cols=74 Identities=30% Similarity=0.383 Sum_probs=60.5
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
++...||||+|--.+||..++ +.+++.+|||--++||-.+...+..+|+..+--.|+||=-..+..+ ++-.+-+
T Consensus 1047 r~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr~~~~Q~IvISLK~~~y~k-adaLVGv 1124 (1141)
T KOG0018|consen 1047 RPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIRSSNFQFIVISLKEEFYQK-ADALVGV 1124 (1141)
T ss_pred CchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHhcCCceEEEEeccHHHhhh-hhceeee
Confidence 366889999999999998886 4589999999999999999999999999666667777776667655 3555544
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.012 Score=47.16 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEE
Q psy2681 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 106 ~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
++++++..+|+++++|||. |.+....+.+... .+..++.++|..+... ..+|++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a~-~G~~v~~t~Ha~~~~~-~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAAE-TGHLVMSTLHTNSAAK-TIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHHH-cCCEEEEEecCCcHHH-HHhHHHhh
Confidence 4788999999999999996 6776665555443 4678999999876553 34565433
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.016 Score=49.80 Aligned_cols=77 Identities=21% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--C-CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 104 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--Q-GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 104 Rv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~-~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
.-.+..+|-.+|+++++|||.+ . +.+++++.. + .+++.++|..+... ..+|+..+..|++... |...+
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~---~----e~~~~l~a~~~g~~~~i~T~Ha~~~~~-~~~Rl~~l~~~~~~~~-g~~~~ 278 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG---D----EAFDFIRAVNTGHPGSITTLHAGSPEE-AFEQLALMVKSSQAGL-GLDFA 278 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC---H----HHHHHHHHHhcCCCeEEEEEeCCCHHH-HHHHHHHHhhcccccc-CCCHH
Confidence 3467778999999999999996 2 233444433 3 36799999998554 4688887877776543 43333
Q ss_pred HHHHHHHHh
Q psy2681 181 YREKLLTSL 189 (211)
Q Consensus 181 ~~~~~~~~~ 189 (211)
...+.+.+.
T Consensus 279 ~~~~~i~~~ 287 (308)
T TIGR02788 279 YIVKLVREV 287 (308)
T ss_pred HHHHHHHHh
Confidence 333333333
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.039 Score=55.41 Aligned_cols=65 Identities=34% Similarity=0.476 Sum_probs=52.9
Q ss_pred CCCCCChHHHH------HHHHHHHH-hcCCCe-EEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHH
Q psy2681 93 PIRDLSGGQKA------RVALAELT-LNNPDI-LILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIR 157 (211)
Q Consensus 93 ~~~~LSgG~kq------Rv~iaral-~~~p~l-llLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~ 157 (211)
++..||.|-+= |++++..+ -..+++ +|+|+||.+.|..-....+++|.++. .=||+=||+.+.+.
T Consensus 1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVE 1096 (1111)
T ss_pred eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHH
Confidence 56789999994 56666666 445555 99999999999999999999999874 46888899888775
|
|
| >COG3044 Predicted ATPase of the ABC class [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.26 Score=44.07 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH-------------HHHHHHHhc-C--CeEEEEecChHHHHh
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID-------------ALAEAIKNY-Q--GGVILVSHDERLIRE 158 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~-------------~l~~~l~~~-~--~tiiivsHd~~~~~~ 158 (211)
..-||-+.+-..|=+++=...+.+|+||=+++...-.+. .+.+.+.+. + .++|+||.-...+..
T Consensus 319 gdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla 398 (554)
T COG3044 319 GDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLA 398 (554)
T ss_pred CCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhh
Confidence 578999999999999999999999999999987653332 233333333 3 488888888888889
Q ss_pred hCCeEEEEeCCcee
Q psy2681 159 TDCELWALEKKNIR 172 (211)
Q Consensus 159 ~~~~v~~l~~g~i~ 172 (211)
.+||+++|++.+-.
T Consensus 399 ~aDRaIvMeDhrpk 412 (554)
T COG3044 399 VADRAIVMEDHRPK 412 (554)
T ss_pred hcceEEEecccCcc
Confidence 99999999988753
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.099 Score=47.28 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=41.9
Q ss_pred cCCCeEEEeCCCCCCCHH-HHHHHHHHHHhc---CCeEEEEe-cChHHHHhhCCeEE-EEeCCceeee
Q psy2681 113 NNPDILILDEPTNNLDIE-SIDALAEAIKNY---QGGVILVS-HDERLIRETDCELW-ALEKKNIRKF 174 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~-~~~~l~~~l~~~---~~tiiivs-Hd~~~~~~~~~~v~-~l~~g~i~~~ 174 (211)
.+|++|++|||...+|.. .+..++..+..+ ++.+|++| |++..+..+.+++. -+..|-++.+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i 260 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKL 260 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEee
Confidence 479999999999988765 345677776543 55666665 88888776666554 2445545444
|
|
| >COG4913 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.24 Score=46.96 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=57.9
Q ss_pred CCCChHHHHHHH---HHHHHh--------cCC--CeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC--hHHHHhh
Q psy2681 95 RDLSGGQKARVA---LAELTL--------NNP--DILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD--ERLIRET 159 (211)
Q Consensus 95 ~~LSgG~kqRv~---iaral~--------~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd--~~~~~~~ 159 (211)
..+|||||++++ ||.+|. +.| ..+||||.|+-=|+......+..+++++--.+++|-. +..+..+
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~fglh~v~iTPlk~I~~l~~~ 1068 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREFGLHAVFITPLKEIRLLRHH 1068 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHcCceEEEechHHHHHHHHhh
Confidence 469999999986 455553 223 3689999999999999999999999999877777753 4556666
Q ss_pred CCeEEEEeCC
Q psy2681 160 DCELWALEKK 169 (211)
Q Consensus 160 ~~~v~~l~~g 169 (211)
...++++++.
T Consensus 1069 v~S~ivVh~~ 1078 (1104)
T COG4913 1069 VRSAIVVHRR 1078 (1104)
T ss_pred ccceEEEecC
Confidence 6666766654
|
|
| >TIGR01070 mutS1 DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.15 Score=49.77 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHH-HHHHHHHHHh-cCCeEEEEecChHHHH
Q psy2681 95 RDLSGGQKARVALAELT--LNNPDILILDEP---TNNLDIES-IDALAEAIKN-YQGGVILVSHDERLIR 157 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral--~~~p~lllLDEP---t~gLD~~~-~~~l~~~l~~-~~~tiiivsHd~~~~~ 157 (211)
..+|-=|--...++..| +.++.++|+||+ |+.+|-.+ ...+.+.+.+ .+..++++||..++..
T Consensus 650 ~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 650 SGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred cCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 34566555555555555 578999999999 55555555 4446667666 5668999999986653
|
|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.054 Score=55.67 Aligned_cols=60 Identities=25% Similarity=0.392 Sum_probs=46.1
Q ss_pred CCCCChHHHHHHHHHHHHh--------cC--------C-CeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEe-cChH
Q psy2681 94 IRDLSGGQKARVALAELTL--------NN--------P-DILILDEPTNNLDIESIDALAEAIKNYQGGVILVS-HDER 154 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~--------~~--------p-~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivs-Hd~~ 154 (211)
.+.||||||..+..+..++ .. | .+|+|||- +++|..+...++++++.++.-+||+| +++.
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~~~q~i~~tP~~~~ 1440 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERLDMQLLIAAPENIS 1440 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCcEEEechhhcc
Confidence 5789999998877666554 21 2 44699999 99999999999999999887555555 4443
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.078 Score=42.18 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
...+.+..+....... .+..++|.|++++..+ .+.+|+++|+|.|+.+.++.
T Consensus 63 ~~~~~l~~l~~~~~~~-~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 63 LLISHLQDLKNGKSVE-IPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHHHHHHCCCCEe-ccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 3445666666554444 3778999999876655 57889999999999998863
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.8 Score=32.65 Aligned_cols=59 Identities=37% Similarity=0.333 Sum_probs=45.6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH-------H--HHhcCCeEEEEecC
Q psy2681 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-------A--IKNYQGGVILVSHD 152 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~-------~--l~~~~~tiiivsHd 152 (211)
....++++..+..+.++-..+|.++++||+..-.+......... . ....+..+|.++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 35678888899999999888899999999999999988776543 1 11224588888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.65 Score=41.86 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH---------------HHHHH----HhcCCeEEEEecChH
Q psy2681 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA---------------LAEAI----KNYQGGVILVSHDER 154 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~---------------l~~~l----~~~~~tiiivsHd~~ 154 (211)
..+=||-.-|-..|.-|+=..+++||+||=|++-..-.+.. |.+.+ .+++.+.|+|+--..
T Consensus 320 T~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg 399 (448)
T PF09818_consen 320 TENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG 399 (448)
T ss_pred ccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch
Confidence 35789999999999999999999999999999754432221 12222 334665555556666
Q ss_pred HHHhhCCeEEEEeCCce
Q psy2681 155 LIRETDCELWALEKKNI 171 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i 171 (211)
.....+|+|+.|++-+-
T Consensus 400 dy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 400 DYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhHhhCCEEEEecCccc
Confidence 77788999999987654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.47 Score=39.20 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHHHH--hcCCCeEEEeCCCCCCCHHHHHHH----HHHHHh-cCCeEEEEecChHHHH
Q psy2681 96 DLSGGQKARVALAELT--LNNPDILILDEPTNNLDIESIDAL----AEAIKN-YQGGVILVSHDERLIR 157 (211)
Q Consensus 96 ~LSgG~kqRv~iaral--~~~p~lllLDEPt~gLD~~~~~~l----~~~l~~-~~~tiiivsHd~~~~~ 157 (211)
.+|.=+.-...++.++ +.+..++|+||+..|=++.....+ .+.|.+ .+..+|++||+.+...
T Consensus 102 ~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 102 GLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp SSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 4555333333333333 567889999999999999765544 444444 4668999999987644
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >COG4694 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.26 Score=45.49 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=52.1
Q ss_pred CCC-CChHHHHHHHHHHHHh---cC-----CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhh
Q psy2681 94 IRD-LSGGQKARVALAELTL---NN-----PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET 159 (211)
Q Consensus 94 ~~~-LSgG~kqRv~iaral~---~~-----p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 159 (211)
+++ ||-|++.-++++--|+ .+ -+++++|-|.+++|....-....+++.. +.-|++-|||-.++..+
T Consensus 526 ~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~rd~ 603 (758)
T COG4694 526 VGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFYRDI 603 (758)
T ss_pred ccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceehHHH
Confidence 344 9999999888765443 34 4688999999999999988888888765 45899999998776654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.34 Score=45.75 Aligned_cols=48 Identities=29% Similarity=0.497 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+.+.++.+|+...... .+..+||| +|++|| +..||+..+..+.+.+.+
T Consensus 244 a~~~l~~~gl~~~~~g-~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 244 ARRDLAETGVPEPKTG-LVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHcCCCchhcC-chhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 4556788888766654 77899999 999999 799999999999999975
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.25 Score=46.09 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=44.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHHhhC-CeEEEE
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETD-CELWAL 166 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~-~~v~~l 166 (211)
..|.+||.+||-++|-|..+..++++++..+ .-+|++||..+++.... +.++.+
T Consensus 300 ~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~l 356 (581)
T COG3593 300 ARPNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLADLDSICRL 356 (581)
T ss_pred cccceEEEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccCcccEEEE
Confidence 3455999999999999999999999999887 78999999999987443 344433
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.61 Score=36.32 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=47.5
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCC--CHHHHHHHHHHHHhc--CCeEEEEecCh-HHHHhhCCeEEEEeC
Q psy2681 105 VALAELTL--NNPDILILDEPTNNL--DIESIDALAEAIKNY--QGGVILVSHDE-RLIRETDCELWALEK 168 (211)
Q Consensus 105 v~iaral~--~~p~lllLDEPt~gL--D~~~~~~l~~~l~~~--~~tiiivsHd~-~~~~~~~~~v~~l~~ 168 (211)
...|+..+ .+.++++|||-...+ +....+.+.++|++. +..+|++.++. ..+...+|.|-.|..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 34444444 578999999998874 456778899999876 35899999986 456678888877754
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.54 Score=41.06 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 105 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
-+++++|-.+|+++++||+. |+++.....+.. ..|.+++.+.|-.
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTN 230 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCC
Confidence 34778899999999999997 888877655543 3366888888873
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.66 Score=36.26 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=43.6
Q ss_pred HHHHHHhCCCCC-ccccCCCCCCChHHHHHHH--HHHHHhc-CCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 76 SRRQLGMFGLPS-YAHTIPIRDLSGGQKARVA--LAELTLN-NPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 76 ~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~--iaral~~-~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
+.+++..+++.- ...+ ++..+|+|++|++. +++.+-. +++++ |+|++|..+...+.+.|.++
T Consensus 127 i~~~l~~~~~~~iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred HHHHHHHcCCcEEEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHH
Confidence 345566666642 2334 57789999999877 5555544 34444 99999999999999988753
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.7 Score=33.29 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=41.6
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC---------h-HHHHhhCCeEEEEe
Q psy2681 112 LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD---------E-RLIRETDCELWALE 167 (211)
Q Consensus 112 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd---------~-~~~~~~~~~v~~l~ 167 (211)
..+++++++||- --|+.+....+.+.++..+.+|+++.++ . ..+..++|.|..|.
T Consensus 76 ~~~~dvviIDEa-q~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 76 GEKIDCVLIDEA-QFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCCCEEEEEcc-ccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 357899999999 4466665566777777778899999999 2 35556788887764
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.16 Score=41.27 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=34.6
Q ss_pred CCCeEEEeCCCCCC--CHHHHH----HHHHHHHhcCCeEEEEecChH--------HHHhhCCeEEEEe
Q psy2681 114 NPDILILDEPTNNL--DIESID----ALAEAIKNYQGGVILVSHDER--------LIRETDCELWALE 167 (211)
Q Consensus 114 ~p~lllLDEPt~gL--D~~~~~----~l~~~l~~~~~tiiivsHd~~--------~~~~~~~~v~~l~ 167 (211)
+|+++++|-|+.-+ ++.... .+...+++.+.|+|+++|... .++.+||-++.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 57788888876542 332222 344455667889999999643 2456677787776
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >COG4938 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.71 Score=39.45 Aligned_cols=55 Identities=18% Similarity=0.381 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhh
Q psy2681 105 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET 159 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~ 159 (211)
+.++.....+--++|..+|-++|-|+.+..+.++|.+. +.-+++-||.-..+..+
T Consensus 251 i~L~lli~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhiiNgl 308 (374)
T COG4938 251 IGLMLLIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHIINGL 308 (374)
T ss_pred HHHHeeeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHHhhhh
Confidence 34444334455678899999999999999999998765 56899999987777654
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=1.3 Score=39.53 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCeEEEeC----------CCCCCCHHHHHHHHHHHHhc-------CCeEEEEecChHHHH
Q psy2681 106 ALAELTLNNPDILILDE----------PTNNLDIESIDALAEAIKNY-------QGGVILVSHDERLIR 157 (211)
Q Consensus 106 ~iaral~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~~ 157 (211)
.+..|....|.++++|| +.++.|......+.+++... +..||++||.++.+.
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 45556678999999999 55677888777787777654 236999999876553
|
|
| >PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.40 E-value=1.6 Score=34.67 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=50.5
Q ss_pred HHHHHHHHHh--cCCCeEEEeCCCCCCCH--HHHHHHHHHHHhcC--CeEEEEecCh-HHHHhhCCeEEEEeCC
Q psy2681 103 ARVALAELTL--NNPDILILDEPTNNLDI--ESIDALAEAIKNYQ--GGVILVSHDE-RLIRETDCELWALEKK 169 (211)
Q Consensus 103 qRv~iaral~--~~p~lllLDEPt~gLD~--~~~~~l~~~l~~~~--~tiiivsHd~-~~~~~~~~~v~~l~~g 169 (211)
+-...|+..+ .+.++++|||-...++. ...+.+.++|++.. ..||++-++. ..+...+|.|-.|..+
T Consensus 102 ~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~ 175 (178)
T PRK07414 102 ELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELRRS 175 (178)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence 3345566566 56899999999987765 56788999998763 4799988885 5566788998888765
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=87.66 E-value=1 Score=36.50 Aligned_cols=54 Identities=22% Similarity=0.211 Sum_probs=36.9
Q ss_pred cCCCeEEEeCCCCCC------CHHHHHHHHHHH---HhcCCeEEEEecCh---------HHHHhhCCeEEEEe
Q psy2681 113 NNPDILILDEPTNNL------DIESIDALAEAI---KNYQGGVILVSHDE---------RLIRETDCELWALE 167 (211)
Q Consensus 113 ~~p~lllLDEPt~gL------D~~~~~~l~~~l---~~~~~tiiivsHd~---------~~~~~~~~~v~~l~ 167 (211)
.+++++++| |.+.+ |...+..+.+++ ++.+.|++++||.. ..++.+||.++.|.
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 478999999 54443 444455555554 45578999999952 44677888888885
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=87.59 E-value=0.39 Score=42.76 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=49.2
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cC---CeEEEEecChHHHHhhCCeEE
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQ---GGVILVSHDERLIRETDCELW 164 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~----~~---~tiiivsHd~~~~~~~~~~v~ 164 (211)
+..+++..+++....+.++...|.++++ |-+|......+.+.+.+ ++ ..+.+++|+-.-+..+++.++
T Consensus 255 ~~e~~~~l~~eL~~~~~~L~~kP~IlVl----NKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~ 329 (390)
T PRK12298 255 PVENARIIINELEKYSPKLAEKPRWLVF----NKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLM 329 (390)
T ss_pred hHHHHHHHHHHHHhhhhhhcCCCEEEEE----eCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHH
Confidence 4567889999999999999999999999 99997655544444332 22 357788888766666655553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 211 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-14 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-14 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-14 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 9e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-07 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-06 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-06 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-06 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-06 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 6e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 8e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-04 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-04 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 2e-42
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 37 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL-PSYAHTIPI 94
+ + G+ + + + D F L ++ M GL P I
Sbjct: 840 VDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154
R LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+K ++GGVI+++H
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959
Query: 155 LIRETDCELWALEKKNIRKFNGDFD 179
+ E+WA++ + ++
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHNWV 984
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 6e-29
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Query: 40 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG 99
R + +H + D + +++ + E + +L FG +PI LSG
Sbjct: 493 EECRTV-YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSG 551
Query: 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159
G K ++ALA L N DIL+LDEPTN+LD ++ L + I +SHD +
Sbjct: 552 GWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 611
Query: 160 DCELWALEKKNIRKFNGDFDDYREK 184
+ E +RK+ G+F ++ +K
Sbjct: 612 CEYIINYEGLKLRKYKGNFTEFVKK 636
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 4e-10
Identities = 33/202 (16%), Positives = 56/202 (27%), Gaps = 29/202 (14%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHL--FPDDTPCEYLMKLFNL--PYEKSRRQLGM 82
GEL P GE+ RI QH+ H+ D TP EY+ F E R
Sbjct: 721 GELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQ 780
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNP----DILILDEPTNNLDIESIDALAEA 138
I + G + + + L + E +
Sbjct: 781 INENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSV 840
Query: 139 IKNYQGGVILVSHDERLIRETD-------CELWALEKKNIRK------FNGDFDDYR--- 182
+ LV +++ E D + L +K I + + + +
Sbjct: 841 DNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR 900
Query: 183 -----EKLLTSLGEAMVYNPSV 199
+K+ L P +
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHL 922
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 6e-19
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILV 149
+ LSGG+ RVA+A L DEP++ LDI +A I N V++V
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 150 SHD 152
HD
Sbjct: 285 EHD 287
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-18
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---LGMF 83
G P +G++ L + Q+ + T E L K+ + + + L
Sbjct: 404 GVEEPTEGKVE--WDLTVAYKPQYI--KAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
G+ DLSGG+ RVA+A L + DI +LDEP+ LD+E A++ AI++
Sbjct: 460 GIIDLYDRNV-EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518
Query: 144 ----GGVILVSHDERLIRET 159
++V HD +I
Sbjct: 519 EKNEKTALVVEHDVLMIDYV 538
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-18
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 18/139 (12%)
Query: 27 GELTPNKGELR------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR 77
L P KGE+ + +I + + + +YL L+ + K+
Sbjct: 57 TYLKPLKGEIIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNE 114
Query: 78 --RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135
L + + +LS G RV LA L N +I +LD+P +D +S +
Sbjct: 115 IMDALESVEVLDLKK--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 136 AEAIKNY---QGGVILVSH 151
++I +G VI+ S
Sbjct: 173 LKSILEILKEKGIVIISSR 191
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-17
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 151
LSGG R+ +A L D+ I D+P++ LD+ +A+AI+ VI+V H
Sbjct: 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDH 195
Query: 152 D 152
D
Sbjct: 196 D 196
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-16
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 12/141 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGM 82
GE+T ++G + + + Q D T +YL S
Sbjct: 316 GEITADEGSVTP-EKQILSYKPQRI--FPNYDGTVQQYLENASKDALSTSSWFFEEVTKR 372
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142
L + DLSGG+ ++ +A D+ +LD+P++ LD+E +A+AIK
Sbjct: 373 LNLHRLLESNV-NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431
Query: 143 Q----GGVILVSHDERLIRET 159
++ HD +
Sbjct: 432 TRERKAVTFIIDHDLSIHDYI 452
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 6e-17
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVS 150
I+ LSGG+ RVA+A L N DEP++ LDI A AI V++V
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 151 HD 152
HD
Sbjct: 216 HD 217
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---LGMF 83
G P +G++ L + Q+ + T E L K+ + + L
Sbjct: 334 GVEEPTEGKIE--WDLTVAYKPQYI--KADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAI 139
G+ +LSGG+ RVA+A L + DI +LDEP+ LD+E A+ +
Sbjct: 390 GIIDLYDREV-NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 448
Query: 140 KNYQGGVILVSHDERLIRET 159
+ + ++V HD +I
Sbjct: 449 EKNEKTALVVEHDVLMIDYV 468
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-16
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIP 93
R I + +G + + EYL + + + GL
Sbjct: 87 RKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-R 143
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVS 150
+ S G ++ +A + NP + ILDEPT+ LD+ + + + +K +++ S
Sbjct: 144 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203
Query: 151 H 151
H
Sbjct: 204 H 204
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 8e-16
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 121
+L L + L L LS GQ V + + P+I+ LD
Sbjct: 95 YLYEELKGLDRDLFLEMLKALKLGEEILRRKL-YKLSAGQSVLVRTSLALASQPEIVGLD 153
Query: 122 EPTNNLDIESIDALAEAIKNYQGGVILVSHD 152
EP N+D ++ IK Y ILV+H+
Sbjct: 154 EPFENVDAARRHVISRYIKEYGKEGILVTHE 184
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-15
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 12/140 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---LGMF 83
G L P++G+ P+L + Q T + K + + Q +
Sbjct: 400 GALKPDEGQD--IPKLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
+ + LSGG+ RVA+ DI ++DEP+ LD E ++ I+ +
Sbjct: 456 RIDDIIDQEV-QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
Query: 144 GG----VILVSHDERLIRET 159
+V HD +
Sbjct: 515 LHNKKTAFIVEHDFIMATYL 534
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-15
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVS 150
I LSGG+ R A+ + D+ + DEP++ LD++ A+ I++ VI V
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 151 HD 152
HD
Sbjct: 279 HD 280
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 4e-15
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 10 IAVLQGLRNPLS-----FIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 64
+ +L S F K G++ + +R+ IG E + +
Sbjct: 64 LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ----HIGFVSHSLLEKFQEGERVIDV 119
Query: 65 LM-------KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 113
++ ++ ++ R + L + G+ + A I LS G+K RV +A +
Sbjct: 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-YIGYLSTGEKQRVMIARALMG 178
Query: 114 NPDILILDEPTNNLDIES-------IDALAEAIKNYQGGVILVSHD 152
P +LILDEP LD + +D+L+++ +I V+H
Sbjct: 179 QPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLA--MIYVTHF 222
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 5e-14
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 69 FNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 124
LP ++ R++ L G+ LS GQK RVA+A + + P +LILDEPT
Sbjct: 113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-LSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 125 NNLDIESIDALAEAIK--NYQGG--VILVSHD 152
LD + + + + + G +I+ +HD
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 9e-13
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 69 FNLPYEKSRR---QLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 123
F + + GL S+ +P LSGG+K RVA+A + ++ PDILILDEP
Sbjct: 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 124 TNNLDIESIDALAEAIKNYQGG---VILVSHD 152
LD E L ++ ++ VIL+SHD
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-12
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 66 MKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV----ALAELTLNNPDI 117
+ F P Y+ + + L L A LSGGQ+ + A+A + +
Sbjct: 95 INTFAKPKSHDYQVAMQALDYLNLTHLAKR-EFTSLSGGQRQLILIARAIA----SECKL 149
Query: 118 LILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHD 152
++LDEPT+ LD + L + ++ V+ +H
Sbjct: 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-12
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALA-------ELTLNNPDILILDEPTNNLDI 129
G L LSGG+ RV LA +L+LDEP N+LD+
Sbjct: 108 NDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
Query: 130 ---ESIDALAEAIKNYQGGVILVSHD 152
++D + A+ +++ SHD
Sbjct: 167 AQQSALDKILSALSQQGLAIVMSSHD 192
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + NP IL+LDE T+ LD ES + A+ + G I+++H R
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH--R 584
Query: 155 L--IRETDC 161
L +R D
Sbjct: 585 LSTVRNADV 593
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-11
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+A+A + P IL+LDE T+ LD ES + EA+ + G I+++H R
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH--R 1229
Query: 155 L--IRETDC 161
L I+ D
Sbjct: 1230 LSTIQNADL 1238
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 2e-12
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 83 FGLPSYAHTIPIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALA 136
+ P+ LSGG++ + LA +LILDEPT LD E L
Sbjct: 235 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294
Query: 137 EAIKNYQGG---VILVSHDERLIRETD 160
++ Y VILVSHDE L D
Sbjct: 295 TIMERYLKKIPQVILVSHDEELKDAAD 321
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 6e-12
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
E+ L GL P +LSGG++ RVA+A N P +L DEPT NLD +
Sbjct: 119 ERGEYLLSELGLGDKLSRKP-YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 134 ALAEAIK--NYQGG-VILVSHDERLIRETD 160
+ + N G +++V+H+ L T
Sbjct: 178 RVMDIFLKINEGGTSIVMVTHERELAELTH 207
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-11
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H R
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH--R 203
Query: 155 L--IRETDC 161
L ++ D
Sbjct: 204 LSTVKNADR 212
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-10
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 74 EKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
+++ L M L +A+ P LSGGQ+ RVA+A NNP I++ D+PT LD ++
Sbjct: 123 KRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 133 DALAEAIK--NYQGG--VILVSHDERLIRETD 160
+ + + +K N + G V++V+HD + R +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGE 213
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-10
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 93 PIRDLSGGQKARVALA-ELTL-----NNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P+ LSGG++ + LA L + +LILDEPT LD E L ++ Y
Sbjct: 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 146 --VILVSHDERLIRETD 160
VILVSHDE L D
Sbjct: 114 PQVILVSHDEELKDAAD 130
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-10
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
+ R G+ P LSGG++ RVALA + P +L+LDEP + +D+++
Sbjct: 105 RRVREMAEKLGIAHLLDRKP-ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163
Query: 134 ALAEAIKNYQGGV----ILVSHD 152
L E ++ Q + V+HD
Sbjct: 164 VLMEELRFVQREFDVPILHVTHD 186
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-10
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 141
+SGGQ+ R+A+A L NP IL+LDE T +LD ES + AL +K
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-10
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 152
LSGGQ+ VALA + P +LILD T+ LD + L E+ + V+L++
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ- 215
Query: 153 ERL--IRETD 160
+L
Sbjct: 216 -QLSLAERAH 224
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-10
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGG++ R+A+A L +P I+I DE T++LD ++ +A+++ + +I+++H R
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH--R 213
Query: 155 L--IRETDC 161
L I +
Sbjct: 214 LSTISSAES 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 8e-10
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
L + G+ A P +LSGGQ+ R ALA +P++++LDEP + LD + + E +
Sbjct: 123 LELTGISELAGRYP-HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM 181
Query: 140 KNYQ--GGV--ILVSHD 152
G + VSHD
Sbjct: 182 IAALRANGKSAVFVSHD 198
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-09
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGG+K RVA+A L P I++LDE T+ LD + A+ ++ I+V+H R
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH--R 248
Query: 155 L--IRETD 160
L + D
Sbjct: 249 LSTVVNAD 256
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-09
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
++ + P LSGG++ RVALA + NP IL+LDEP + LD
Sbjct: 106 KRVLDTARDLKIEHLLDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-09
Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 141
LSGGQK R+++A + LNNP ILILDE T+ LD+ES I +AL K+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 526
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 141
LSGGQ+ RVA+A L + +LILDE T+ LD ES I AL E KN
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 3e-09
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 63 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE-------LTLNNP 115
E + + + + + I +LSGG++ VAL+ L N
Sbjct: 247 EAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRV 306
Query: 116 DILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL 155
+ +ILDEPT LD LAE + + +I+++H L
Sbjct: 307 ECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 141
LSGGQ+ R+A+A L + ILILDE T+ LD ES I AL E KN
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 529
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-09
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 17/139 (12%)
Query: 32 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFG 84
++ EL K+ R +IG QH +L T ++L N P ++ +R+ L + G
Sbjct: 96 SESELTKA-RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE---SIDALAEAIKN 141
L + P +LSGGQK RVA+A +NP +L+ D+ T+ LD SI L + I N
Sbjct: 153 LGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI-N 210
Query: 142 YQGG--VILVSHDERLIRE 158
+ G ++L++H+ +++
Sbjct: 211 RRLGLTILLITHEMDVVKR 229
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-08
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
+ R L L SYA+ P +LSGGQ+ RVALA P +L+ DEP +D
Sbjct: 124 ARVRELLRFMRLESYANRFP-HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-08
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 93 PIRDLSGGQKARV------ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 145
P R LSGG++A + +LAE+ D +DE ++LD E+ + +A +K +
Sbjct: 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLN 335
Query: 146 --VILVSHDERL 155
++ ++HD
Sbjct: 336 KVIVFITHDREF 347
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-08
Identities = 37/113 (32%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 28 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----YEKSRRQ 79
L L K R +G Q +LFP T + K+ P K+
Sbjct: 87 NLKAKDTNLNKV-REEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMEL 143
Query: 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
L GL AH P LSGGQ RVA+A P I++ DEPT+ LD E +
Sbjct: 144 LDKVGLKDKAHAYPDS-LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 7e-07
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130
E++ + L G+ A LSGGQ+ RV++A PD+L+ DEPT+ LD E
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 7e-07
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT---NNLDIE 130
EK+ + L L +LSGGQ V + + NP ++++DEP
Sbjct: 132 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 131 SIDALAEAIKNYQGGVILVSHDERLI 156
I +K +++ H ++
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDIV 216
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
++ + + + P R+LSG Q+ RVALA + +P +L+LDEP +NLD
Sbjct: 119 KRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-06
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135
LS G K + LA L+ IL+LDEP+ +LD + +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQI 193
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVS 150
SGGQK R+++A + P +LILD+ T+++D + + + +K Y G +++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ RVA+A + P++L+LDEP +NLD
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-05
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL-AEAIKNYQGG--VILVSHDE 153
LSGGQ+AR++LA + D+ +LD P LD+ + + + ILV+
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 154 RLIRETD 160
+++ D
Sbjct: 220 EHLKKAD 226
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-05
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ RVALA + P +L+ DEP +NLD
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-05
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL-AEAIKNYQGG--VILVSHDE 153
LSGGQ+AR++LA + D+ +LD P LD+ + + + ILV+
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 154 RLIRETD 160
+++ D
Sbjct: 191 EHLKKAD 197
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-05
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEP 123
LSGGQK RV+LA +N DI + D+P
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDP 154
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 10/37 (27%)
Query: 97 LSGGQK-----ARVALAELTLNNPDILILDEPTNNLD 128
LS GQ+ R LA NP ILILDE T+N+D
Sbjct: 492 LSQGQRQLLAITRAFLA-----NPKILILDEATSNVD 523
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 9e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
LSGGQ+ RVA+A + PD+L++DEP +NLD
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128
R+LSGGQ+ RVAL + P + ++DEP +NLD
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 5e-04
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL---AEAIKNYQG---GVILVSH 151
SGG+K R + +L + P +LDE + LD IDAL A + +G G ++++H
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLD---IDALKVVARGVNAMRGPNFGALVITH 201
Query: 152 DERLIR 157
+R++
Sbjct: 202 YQRILN 207
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 38.3 bits (90), Expect = 7e-04
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 98 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL---AEAIKNYQG---GVILVSH 151
SGG+K R + ++ + P++ ILDE + LD IDAL A+ + + + I+V+H
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLD---IDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 152 DERLIR 157
+R++
Sbjct: 223 YQRILD 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.98 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.98 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.98 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.98 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.98 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.94 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.9 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.88 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.87 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.86 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.86 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.86 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.84 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.83 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.82 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.8 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.78 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.76 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.75 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.74 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.71 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.7 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.66 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.63 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.62 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.6 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.57 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.55 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.53 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.5 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.47 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.44 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.41 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.35 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.34 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.33 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.32 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.21 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.21 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.17 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.13 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.12 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.1 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.09 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.07 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.07 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.06 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.04 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.98 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.97 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.94 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.88 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.85 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.82 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.82 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.77 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.76 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.66 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.45 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.42 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.39 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.36 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.35 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.23 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.01 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.99 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.98 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.92 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.91 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.86 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.83 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.72 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.71 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.63 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.37 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.36 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.34 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.29 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.27 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.27 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.16 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.14 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.11 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.93 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.78 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.72 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 96.68 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.52 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.37 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.35 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.35 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.1 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.42 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 95.36 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.28 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 95.07 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 94.66 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 94.43 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.13 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 93.96 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 92.64 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 92.25 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 91.83 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 91.73 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 91.4 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 91.3 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 89.57 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 89.27 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 88.99 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 88.13 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 88.05 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 85.91 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 85.67 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 85.63 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 85.0 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 84.59 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 81.24 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 81.18 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=276.14 Aligned_cols=174 Identities=22% Similarity=0.297 Sum_probs=148.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ +++|||+||++. +++.+|+.+++
T Consensus 50 ~i~~Gei~~Ii-GpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~--l~~~~TV~env 126 (366)
T 3tui_C 50 HVPAGQIYGVI-GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN--LLSSRTVFGNV 126 (366)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCC--CCTTSCHHHHH
T ss_pred EEcCCCEEEEE-cCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCc--cCCCCCHHHHH
Confidence 35678888888 554 5999999 9999999999998643 236999999975 88999999998
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.+. +++.++++.+||.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~-~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l 205 (366)
T 3tui_C 127 ALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205 (366)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 632 33332 356789999999887765 8899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+++ +.|||+||||++.+.++||++++|++|+++. .|+..++
T Consensus 206 L~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~-~g~~~ev 251 (366)
T 3tui_C 206 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEV 251 (366)
T ss_dssp HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-CCBHHHH
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 8764 6799999999999999999999999999975 6766554
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=262.09 Aligned_cols=172 Identities=23% Similarity=0.270 Sum_probs=142.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||+||++. +++.+|+.++
T Consensus 27 ~i~~Ge~~~ii-G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~en 103 (235)
T 3tif_A 27 NIKEGEFVSIM-GPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN--LIPLLTALEN 103 (235)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC--CCTTSCHHHH
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc--cCCCCcHHHH
Confidence 35678888999 554 5999999 9999999999998653 125999999975 7888999999
Q ss_pred HHhh---c---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 65 LMKL---F---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 65 ~~~~---~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
+... . ... .+++.++++.+++.+...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~ 183 (235)
T 3tif_A 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183 (235)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 8632 1 222 23466789999998754234899999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChH
Q psy2681 135 LAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 135 l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~ 179 (211)
+.++|+++ +.|||+||||++.+ ++||++++|++|+++. .++..
T Consensus 184 i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~ 230 (235)
T 3tif_A 184 IMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLR 230 (235)
T ss_dssp HHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChh
Confidence 99999764 67999999999965 7899999999999975 34433
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=263.13 Aligned_cols=175 Identities=26% Similarity=0.330 Sum_probs=148.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+++.
T Consensus 46 ~i~~Gei~~li-G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~l~ 122 (263)
T 2olj_A 46 HIREGEVVVVI-GPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN--LFPHMTVLNNIT 122 (263)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCC--CCTTSCHHHHHH
T ss_pred EEcCCCEEEEE-cCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCc--CCCCCCHHHHHH
Confidence 45678888999 554 5999999 9999999999998643 124999999874 788899999886
Q ss_pred hh----cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 67 KL----FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 67 ~~----~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~ 201 (263)
T 2olj_A 123 LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201 (263)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-ChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 42 2333 2346789999999877664 8899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||+||||++++.++||++++|++|+++. .|+.+++.
T Consensus 202 l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 247 (263)
T 2olj_A 202 MKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLF 247 (263)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9765 5799999999999999999999999999864 56766553
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=262.44 Aligned_cols=174 Identities=25% Similarity=0.364 Sum_probs=147.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHL 55 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l 55 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||+||++. +
T Consensus 28 ~i~~Ge~~~li-G~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~--l 104 (262)
T 1b0u_A 28 QARAGDVISII-GSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--L 104 (262)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC--C
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcc--c
Confidence 45678889999 554 5999999 9999999999997643 124999999864 7
Q ss_pred CCCCCHHHHHHhh----cCCC----HHHHHHHHHhCCCCCc-cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q psy2681 56 FPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPSY-AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126 (211)
Q Consensus 56 ~~~~t~~e~~~~~----~~~~----~~~~~~~l~~~gl~~~-~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~g 126 (211)
++.+|+.+++... .+.. .+++.++++.+|+.+. .++ ++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 105 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 183 (262)
T 1b0u_A 105 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183 (262)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 8889999988642 2333 2346789999999876 664 8899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 127 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 127 LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 184 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 240 (262)
T 1b0u_A 184 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 240 (262)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999998765 5799999999999999999999999999874 5666654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=271.69 Aligned_cols=176 Identities=21% Similarity=0.277 Sum_probs=147.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.+++--. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +|+.+|+.+|+..
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~--l~p~ltV~eni~~ 103 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV--LFPHLTVYRNIAY 103 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCC--CCTTSCHHHHHHT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCc--CCCCCCHHHHHHH
Confidence 356678888884443 4999999 9999999999997532 246999999975 8999999999974
Q ss_pred hc---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 LF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. +.. .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|.
T Consensus 104 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 104 GLGNGKGRTAQERQRIEAMLELTGISELAGR-YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp TSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 32 111 2457789999999987775 889999999999999999999999999999999999999999887654
Q ss_pred h----cCCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 N----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~----~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+ .+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 183 ~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~el~ 227 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TASPHELY 227 (359)
T ss_dssp HHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-EeCHHHHH
Confidence 3 47799999999999999999999999999975 57776654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=259.14 Aligned_cols=173 Identities=24% Similarity=0.330 Sum_probs=145.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 71 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~ 71 (211)
+.. ..+.++ |-+ ++|||++ ++|+++|++|+|..++ ++.+||+||++. +++.+|+.+++......
T Consensus 22 i~~-e~~~li-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~~~ 97 (240)
T 2onk_A 22 MGR-DYCVLL-GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPHLSVYRNIAYGLRN 97 (240)
T ss_dssp ECS-SEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC--CCTTSCHHHHHHTTCTT
T ss_pred ECC-EEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCc--cCCCCcHHHHHHHHHHH
Confidence 344 567777 554 5999999 9999999999998643 346999999875 78889999998643211
Q ss_pred -----CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----
Q psy2681 72 -----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142 (211)
Q Consensus 72 -----~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---- 142 (211)
..+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.++|+++
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~ 176 (240)
T 2onk_A 98 VERVERDRRVREMAEKLGIAHLLDR-KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF 176 (240)
T ss_dssp SCHHHHHHHHHHHHHTTTCTTTTTC-CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHcCCHHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 13456789999999877664 88999999999999999999999999999999999999999999999764
Q ss_pred CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 177 g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 215 (240)
T 2onk_A 177 DVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp TCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 5799999999999999999999999999864 56766553
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=272.42 Aligned_cols=175 Identities=19% Similarity=0.241 Sum_probs=149.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |=. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+...
T Consensus 25 ~i~~Ge~~~ll-GpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~--l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 25 DIHEGEFVVFV-GPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA--LYPHLSVAENMSFGLK 101 (381)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCC--CCTTSCHHHHHTHHHH
T ss_pred EECCCCEEEEE-cCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCc--CCCCCCHHHHHHHHHH
Confidence 35667888888 554 5999999 9999999999998643 246999999975 89999999998632
Q ss_pred -cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.+. +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~ 180 (381)
T 3rlf_A 102 LAGAKKEVINQRVNQVAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (381)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTC-CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 23332 456789999999887765 88999999999999999999999999999999999999999999988754
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|+..++.
T Consensus 181 ~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l~ 222 (381)
T 3rlf_A 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELY 222 (381)
T ss_dssp HHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHHH
Confidence 6799999999999999999999999999975 56766643
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=264.27 Aligned_cols=176 Identities=23% Similarity=0.319 Sum_probs=146.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||+||++...++ .+|+.+++.
T Consensus 30 ~i~~Ge~~~ii-GpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~ 107 (275)
T 3gfo_A 30 NIKRGEVTAIL-GGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVS 107 (275)
T ss_dssp EEETTSEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHH
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHH
Confidence 35668888888 554 5999999 9999999999998653 2359999998742334 689999886
Q ss_pred hh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 KL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
.. .+.+. +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 108 FGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 32 23332 356789999999877664 88999999999999999999999999999999999999999999998
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+++ +.|||+||||++++..+||++++|++|+++. .|+..++.
T Consensus 187 ~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 232 (275)
T 3gfo_A 187 VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNPKEVF 232 (275)
T ss_dssp HHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE-EECHHHHT
T ss_pred HHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 754 5699999999999999999999999999974 67776653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=269.19 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=149.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.+..|..+.++ |-. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+.....
T Consensus 25 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~ 101 (359)
T 2yyz_A 25 EVKDGEFVALL-GPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA--LYPHMTVFENIAFPLR 101 (359)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCC--CCTTSCHHHHHHGGGS
T ss_pred EEcCCCEEEEE-cCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHH
Confidence 35677888888 554 5999999 9999999999998643 246999999975 7899999999975322
Q ss_pred ---CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 71 ---LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 71 ---~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.. .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (359)
T 2yyz_A 102 ARRISKDEVEKRVVEIARKLLIDNLLDR-KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180 (359)
T ss_dssp SSCSHHHHTTHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 21 2357789999999887765 88999999999999999999999999999999999999999999988764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 181 ~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 222 (359)
T 2yyz_A 181 QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVY 222 (359)
T ss_dssp HHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 6799999999999999999999999999975 57776653
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=261.00 Aligned_cols=183 Identities=21% Similarity=0.211 Sum_probs=151.7
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ ++.++|++|++. +++.+|+.+++...
T Consensus 33 ~i~~Ge~~~li-G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~ 109 (266)
T 4g1u_C 33 HIASGEMVAII-GPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSE--LAFPFSVSEVIQMG 109 (266)
T ss_dssp EEETTCEEEEE-CCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCC--CCSCCBHHHHHHGG
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCc--cCCCCCHHHHHHhh
Confidence 35678889999 554 5999999 9999999999998653 135999999875 66779999998643
Q ss_pred cC-----CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 FN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~------~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.. ...+++.++++.+++.+..++ ++.+|||||||||+|||||+. +|++|||||||+|||+.++..+.+
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~ 188 (266)
T 4g1u_C 110 RAPYGGSQDRQALQQVMAQTDCLALAQR-DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR 188 (266)
T ss_dssp GTTSCSTTHHHHHHHHHHHTTCSTTTTS-BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHcCChhHhcC-CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHH
Confidence 21 124567889999999887765 789999999999999999999 999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHhh
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSLG 190 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~~ 190 (211)
+|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++.. ..+..++
T Consensus 189 ~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~-~g~~~~~~~~~~l~~~~ 245 (266)
T 4g1u_C 189 LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA-CGTPEEVLNAETLTQWY 245 (266)
T ss_dssp HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHCCHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-EcCHHHHhCcHHHHHHh
Confidence 99765 3499999999999999999999999999974 677776542 3344444
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-38 Score=255.20 Aligned_cols=167 Identities=21% Similarity=0.280 Sum_probs=141.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +..++|+||++. +++.+|+.+++
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l 103 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY--LIPELTALENV 103 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCC--CCTTSCHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcc--cCCCCCHHHHH
Confidence 456788888884443 5999999 9999999999997643 135999999874 78889999988
Q ss_pred Hhh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR-KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 532 2322 2346789999999887765 8899999999999999999999999999999999999999999999
Q ss_pred HHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 139 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 139 l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 183 l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 183 FLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp HHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 8765 57999999999998 7999999999999864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=268.82 Aligned_cols=175 Identities=26% Similarity=0.342 Sum_probs=148.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+
T Consensus 27 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni 103 (353)
T 1oxx_K 27 NIENGERFGIL-GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA--LYPNLTAFENI 103 (353)
T ss_dssp EECTTCEEEEE-CSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC--CCTTSCHHHHH
T ss_pred EECCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCc--cCCCCCHHHHH
Confidence 35667888888 665 5999999 9999999999997532 246999999975 88999999998
Q ss_pred Hhhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.... +.. .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 182 (353)
T 1oxx_K 104 AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182 (353)
T ss_dssp HGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 7532 223 2356789999999887765 8899999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 183 l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 229 (353)
T 1oxx_K 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLY 229 (353)
T ss_dssp HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 8754 6799999999999999999999999999975 56766653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=269.88 Aligned_cols=175 Identities=25% Similarity=0.334 Sum_probs=148.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..+. ++.+||+||++. +++.+|+.+|+...
T Consensus 37 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~l~ 113 (355)
T 1z47_A 37 QIREGEMVGLL-GPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA--LFQHMTVYDNVSFGLR 113 (355)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGC--CCTTSCHHHHHHHHHH
T ss_pred EECCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHH
Confidence 35567888888 554 5999999 9999999999998643 346999999875 88999999998642
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.+ .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 114 ~~~~~~~~~~~~v~~~l~~~gL~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 114 EKRVPKDEMDARVRELLRFMRLESYANR-FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 2333 2356789999999887765 88999999999999999999999999999999999999999999988754
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 193 ~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 234 (355)
T 1z47_A 193 DEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVY 234 (355)
T ss_dssp HHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 57766653
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=257.69 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=148.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+++...
T Consensus 37 ~i~~Gei~~l~-G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~~~ 113 (256)
T 1vpl_A 37 EIEEGEIFGLI-GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVA 113 (256)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC--CCTTSBHHHHHHHHH
T ss_pred EEcCCcEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCC--CCCCCcHHHHHHHHH
Confidence 35678888888 554 5999999 9999999999998653 235999999875 67888999988532
Q ss_pred --cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 69 --FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 --~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
++... +++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 114 GFYASSSSEIEEMVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHCCGGGGGS-BGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHCCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 23332 356788999999877665 78999999999999999999999999999999999999999999999765
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 193 ~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 234 (256)
T 1vpl_A 193 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELK 234 (256)
T ss_dssp HHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHH
T ss_pred HhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-ecCHHHHH
Confidence 5799999999999999999999999999864 56666553
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=267.96 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=148.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+...
T Consensus 22 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 22 KVESGEYFVIL-GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS--LFPHMNVKKNLEFGMR 98 (348)
T ss_dssp EECTTCEEEEE-CCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC--CCTTSCHHHHHHHHHH
T ss_pred EEcCCCEEEEE-CCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcc--cCCCCCHHHHHHHHHH
Confidence 45677888888 555 4999999 9999999999998654 235999999875 88999999998642
Q ss_pred -cCC-CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----
Q psy2681 69 -FNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---- 142 (211)
Q Consensus 69 -~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---- 142 (211)
.+. ..+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 99 ~~~~~~~~~v~~~l~~~~L~~~~~~-~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~ 177 (348)
T 3d31_A 99 MKKIKDPKRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177 (348)
T ss_dssp HHCCCCHHHHHHHHHHTTCTTTTTS-CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc
Confidence 122 23668889999999987765 88999999999999999999999999999999999999999999998764
Q ss_pred CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 143 QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++
T Consensus 178 g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~ 215 (348)
T 3d31_A 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEI 215 (348)
T ss_dssp TCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 6799999999999999999999999999975 5666654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=256.29 Aligned_cols=175 Identities=19% Similarity=0.246 Sum_probs=146.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ +..+||+||++. +++.+|+.+++..
T Consensus 28 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~ltv~enl~~ 104 (240)
T 1ji0_A 28 KVPRGQIVTLI-GANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR--IFPELTVYENLMM 104 (240)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC--CCTTSBHHHHHHG
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCc--cCCCCcHHHHHHH
Confidence 45678888888 554 5999999 9999999999998643 124999999874 7888999999864
Q ss_pred hc--CC--C--HHHHHHHHHhCC-CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 LF--NL--P--YEKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~~--~~--~--~~~~~~~l~~~g-l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. .. . .+.+.++++.++ +.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 105 GAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ-LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp GGTTCCCSSHHHHHHHHHHHHCHHHHTTTTS-BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcccHhhHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 32 11 1 234677899994 8776664 789999999999999999999999999999999999999999999997
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
++ +.|||+||||++++.++||++++|++|+++. .|+..++.
T Consensus 184 ~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHH
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 65 5699999999999999999999999999864 56666553
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=268.60 Aligned_cols=175 Identities=23% Similarity=0.278 Sum_probs=149.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|+...
T Consensus 25 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~ 101 (362)
T 2it1_A 25 KIKDGEFMALL-GPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWA--LYPHMTVYKNIAFPLE 101 (362)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCC--CCTTSCHHHHHHHHHH
T ss_pred EECCCCEEEEE-CCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcc--cCCCCCHHHHHHHHHH
Confidence 35677888888 554 5999999 9999999999998643 246999999975 88999999998642
Q ss_pred -cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+... +++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 102 LRKAPREEIDKKVREVAKMLHIDKLLNR-YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhhC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 23332 356789999999987765 88999999999999999999999999999999999999999999998764
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 181 ~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~ 222 (362)
T 2it1_A 181 KELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVY 222 (362)
T ss_dssp HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 57766653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=268.66 Aligned_cols=176 Identities=21% Similarity=0.268 Sum_probs=144.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.+++--. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +|+.+|+.+|+....
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~eni~~~~~~ 110 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA--VWPHMTVYENIAFPLKI 110 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC--------CCCHHHHHHTTCC-
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcc--cCCCCCHHHHHHHHHHh
Confidence 456778888883333 5999999 9999999999998643 246999999875 789999999997532
Q ss_pred -CCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 70 -NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 70 -~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
+... +++.++++.+||.+..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 111 KKFPKDEIDKRVRWAAELLQIEELLNR-YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTS-CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 2232 356789999999887765 78999999999999999999999999999999999999999999998764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 190 ~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 230 (372)
T 1v43_A 190 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVY 230 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 6799999999999999999999999999975 57766653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=258.85 Aligned_cols=173 Identities=17% Similarity=0.197 Sum_probs=146.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|..+.++ |-+ ++|||+| |+|+++|++|+|..++ +..+||+||++. +++.+|+.+++..
T Consensus 29 ~i~~Ge~~~li-G~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~ 105 (257)
T 1g6h_A 29 SVNKGDVTLII-GPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ--PLKEMTVLENLLI 105 (257)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCG--GGGGSBHHHHHHG
T ss_pred EEeCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCc--cCCCCcHHHHHHH
Confidence 45678888999 554 5999999 9999999999998643 125999999874 6788999999864
Q ss_pred hc-----C-----------CC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 68 LF-----N-----------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 68 ~~-----~-----------~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
.. + .. .+++.++++.+|+++..++ ++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L 184 (257)
T 1g6h_A 106 GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184 (257)
T ss_dssp GGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred HHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCC-CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 21 1 11 2346789999999877664 78999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 128 DIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 128 D~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
|+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.++
T Consensus 185 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 185 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 999999999999765 6799999999999999999999999999864 466555
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=256.98 Aligned_cols=171 Identities=20% Similarity=0.258 Sum_probs=144.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc----C----C
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----N----L 71 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~----~----~ 71 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|.. +..+||+||++. +++.+|+.+++.... + .
T Consensus 27 ~i~~Ge~~~l~-G~nGsGKSTLl~~l~Gl~~p~~G~I~~--~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~ 101 (253)
T 2nq2_C 27 DLNKGDILAVL-GQNGCGKSTLLDLLLGIHRPIQGKIEV--YQSIGFVPQFFS--SPFAYSVLDIVLMGRSTHINTFAKP 101 (253)
T ss_dssp EEETTCEEEEE-CCSSSSHHHHHHHHTTSSCCSEEEEEE--CSCEEEECSCCC--CSSCCBHHHHHHGGGGGGSCTTCCC
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEE--eccEEEEcCCCc--cCCCCCHHHHHHHhhhhhcccccCC
Confidence 35677888888 554 5999999 99999999999983 357999999875 677889999986421 1 1
Q ss_pred C---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CC
Q psy2681 72 P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QG 144 (211)
Q Consensus 72 ~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~ 144 (211)
. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 180 (253)
T 2nq2_C 102 KSHDYQVAMQALDYLNLTHLAKR-EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180 (253)
T ss_dssp CHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHcCChHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 2 2356789999999877664 78999999999999999999999999999999999999999999999765 57
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|||++|||++++..+||++++|++|+ + ..|+.+++
T Consensus 181 tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 181 TVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI 215 (253)
T ss_dssp EEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred EEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence 99999999999999999999999999 5 35666655
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=267.96 Aligned_cols=175 Identities=22% Similarity=0.321 Sum_probs=148.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-. ++|||+| |+|+++|++|+|..++ ++.+||+||++. +++.+|+.+|
T Consensus 25 ~i~~Ge~~~ll-GpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~--l~~~ltv~en 101 (372)
T 1g29_1 25 EVKDGEFMILL-GPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA--LYPHMTVYDN 101 (372)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC--CCTTSCHHHH
T ss_pred EEcCCCEEEEE-CCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCc--cCCCCCHHHH
Confidence 35667888888 554 5999999 9999999999997532 235999999975 8899999999
Q ss_pred HHhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 65 LMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 65 ~~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+... .+... +++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+
T Consensus 102 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 180 (372)
T 1g29_1 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180 (372)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 8642 23332 356789999999887765 889999999999999999999999999999999999999999999
Q ss_pred HHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|+|+||||++++..+||++++|++|+++. .|++.++.
T Consensus 181 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 228 (372)
T 1g29_1 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVY 228 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHH
Confidence 88754 6799999999999999999999999999974 57776653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=255.10 Aligned_cols=176 Identities=26% Similarity=0.320 Sum_probs=147.1
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-- 69 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||++|++. ..++.+|+.+++....
T Consensus 29 ~i~~Ge~~~li-G~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 29 VINEGECLLVA-GNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPE-DQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGG-GGCCCSSHHHHHHHTTTT
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccch-hhcCCCcHHHHHHHHHHh
Confidence 45678888899 554 5999999 9999999999998754 245999999852 1355689999986421
Q ss_pred --C--CCHHHHHHHHHhCCCC--CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 70 --N--LPYEKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 70 --~--~~~~~~~~~l~~~gl~--~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
. ...+++.++++.+|+. +..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDR-VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TCTTSCSHHHHHHHHHHTTCCHHHHTTC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCcccccC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 1 1245678899999998 76664 78999999999999999999999999999999999999999999999765
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++..+||++++|++|+++. .|+..++.
T Consensus 186 ~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 226 (266)
T 2yz2_A 186 TLGKTVILISHDIETVINHVDRVVVLEKGKKVF-DGTRMEFL 226 (266)
T ss_dssp HTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE-EEEHHHHH
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 5799999999999999999999999999864 56665543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=252.18 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=147.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|+ |+|..++ +..++|++|++. +++.+|+.+++...
T Consensus 22 ~i~~Ge~~~li-G~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 22 EVRAGEILHLV-GPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQT--PPFATPVWHYLTLH 97 (249)
T ss_dssp EEETTCEEEEE-CCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCC--CCTTCBHHHHHHTT
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCc--cCCCCcHHHHHHHh
Confidence 35677888888 554 5999999 99999999 9998654 135999999975 67888999998643
Q ss_pred c--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC-------eEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 F--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD-------ILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~-------lllLDEPt~gLD~~~~~~l~~~l 139 (211)
. ....+.+.++++.+|+.+..++ ++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+.+.|
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l 176 (249)
T 2qi9_C 98 QHDKTRTELLNDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176 (249)
T ss_dssp CSSTTCHHHHHHHHHHTTCGGGTTS-BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHH
T ss_pred hccCCcHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHH
Confidence 1 1235678889999999877665 789999999999999999999999 99999999999999999999999
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+++ +.|||++|||++++..+||++++|++|+++. .|+.+++
T Consensus 177 ~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 220 (249)
T 2qi9_C 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEV 220 (249)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHH
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 765 5799999999999999999999999999864 5666655
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=252.00 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=146.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEE-EEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIG-KFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig-~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+. |..+.++ |-+ ++|||++ |+|++ |++|+|..+. ++.++ |+||++. + .+|+.+++...
T Consensus 27 ~i~-Ge~~~i~-G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~--l--~~tv~enl~~~~~ 99 (263)
T 2pjz_A 27 EVN-GEKVIIL-GPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYE--I--GVTVNDIVYLYEE 99 (263)
T ss_dssp EEC-SSEEEEE-CCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSC--T--TSBHHHHHHHHHH
T ss_pred EEC-CEEEEEE-CCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCc--c--CCcHHHHHHHhhh
Confidence 456 7888888 554 5999999 99999 9999998654 33699 9999875 4 78999988642
Q ss_pred -cCCCHHHHHHHHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeE
Q psy2681 69 -FNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 146 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ti 146 (211)
+....+++.++++.+|+. +..++ ++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++..||
T Consensus 100 ~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tv 178 (263)
T 2pjz_A 100 LKGLDRDLFLEMLKALKLGEEILRR-KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178 (263)
T ss_dssp HTCCCHHHHHHHHHHTTCCGGGGGS-BGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEE
T ss_pred hcchHHHHHHHHHHHcCCChhHhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcE
Confidence 234566788999999998 76664 789999999999999999999999999999999999999999999999885699
Q ss_pred EEEecChHHHHhhCC-eEEEEeCCceeeecCChHHHH
Q psy2681 147 ILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 147 iivsHd~~~~~~~~~-~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+||||++++.++|| ++++|++|+++. .|+.+++.
T Consensus 179 iivtHd~~~~~~~~d~~i~~l~~G~i~~-~g~~~~l~ 214 (263)
T 2pjz_A 179 ILVTHELDMLNLYKEYKAYFLVGNRLQG-PISVSELL 214 (263)
T ss_dssp EEEESCGGGGGGCTTSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEEcCHHHHHHhcCceEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999 999999999864 56666543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=258.75 Aligned_cols=177 Identities=20% Similarity=0.279 Sum_probs=145.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ ++.+||++|++...++..+|+.+++.
T Consensus 43 ~i~~Ge~~~li-G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~ 121 (279)
T 2ihy_A 43 QIAKGDKWILY-GLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI 121 (279)
T ss_dssp EEETTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHH
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHH
Confidence 45678888999 554 5999999 9999999999998653 13599999986422334569999986
Q ss_pred hhc-------C-CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 67 KLF-------N-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 67 ~~~-------~-~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
... + .. .+++.++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l 200 (279)
T 2ihy_A 122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESL 200 (279)
T ss_dssp TTC---------CCHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHH
Confidence 421 1 12 2346788999999877664 7899999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeE--EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 136 AEAIKNY---QGGV--ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 136 ~~~l~~~---~~ti--iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+++|+++ +.|| |+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 201 ~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 251 (279)
T 2ihy_A 201 LSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ-QGAVEDIL 251 (279)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE-EEEHHHHC
T ss_pred HHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 9999765 5799 999999999999999999999999864 56666653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=246.14 Aligned_cols=173 Identities=23% Similarity=0.323 Sum_probs=140.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..+||+||++. +++ .|+.+++...
T Consensus 31 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~ 106 (247)
T 2ff7_A 31 SIKQGEVIGIV-GRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV--LLN-RSIIDNISLA 106 (247)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--CTT-SBHHHHHTTT
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc--ccc-ccHHHHHhcc
Confidence 45678888888 554 5999999 9999999999998653 235999999875 554 5999998643
Q ss_pred c-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ....+++.++++.+++.+...+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~ 186 (247)
T 2ff7_A 107 NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186 (247)
T ss_dssp CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 2 2345556667777776543321 2468999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|+++ +.|||+||||++.+.. ||++++|++|+++. .|+.+++
T Consensus 187 ~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~l 230 (247)
T 2ff7_A 187 NMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE-QGKHKEL 230 (247)
T ss_dssp HHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHH
Confidence 99876 6799999999998864 99999999999874 5666554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=247.98 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=140.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|+||++. +++ .|+.+++...
T Consensus 41 ~i~~Ge~~~i~-G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~ 116 (271)
T 2ixe_A 41 TLYPGKVTALV-GPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL--LFG-RSFRENIAYG 116 (271)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC--CCS-SBHHHHHHTT
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc--ccc-ccHHHHHhhh
Confidence 35678888888 554 5999999 9999999999998653 235999999975 565 5999998643
Q ss_pred cC-CCH-HH---------HHHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 69 FN-LPY-EK---------SRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 69 ~~-~~~-~~---------~~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
.. ... .. +.++++.+ |+....++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 117 LTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE-TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp CSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred cccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 21 111 11 23457777 67766654 7899999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 136 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 136 ~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.+.|+++ +.|||+||||++++.. ||++++|++|+++. .|+.+++.
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~ 244 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLM 244 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 9999876 4699999999999875 99999999999864 57776654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=245.16 Aligned_cols=176 Identities=24% Similarity=0.276 Sum_probs=143.5
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ +..++|+||++. +++ .|+.+++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~ 100 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA--IMA-GTIRENLTYGL 100 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSC--CCC-EEHHHHTTSCT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCc--ccc-ccHHHHHhhhc
Confidence 456778888884443 5999999 9999999999997642 345999999975 565 5999998643
Q ss_pred -cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
.....+.+.++++.+++.+..++ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~ 180 (243)
T 1mv5_A 101 EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180 (243)
T ss_dssp TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHH
T ss_pred cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 22345667788888888765432 2467999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|+++ +.|||+||||++.+. .||++++|++|+++. .|+..++..
T Consensus 181 ~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 226 (243)
T 1mv5_A 181 ALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SGKHNELVA 226 (243)
T ss_dssp HHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CSCHHHHHH
T ss_pred HHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-eCCHHHHHh
Confidence 99765 679999999999886 599999999999864 677776543
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=246.12 Aligned_cols=174 Identities=20% Similarity=0.289 Sum_probs=141.6
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCc--ccCCcceEEecCC------------eEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGE--LTPNKGELRKSPR------------LRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~--~~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||+| |+|+ .+|++|+|..++. ..++|++|++. +++.+|+.+++
T Consensus 42 ~i~~Ge~~~l~-G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~~ 118 (267)
T 2zu0_C 42 DVHPGEVHAIM-GPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV--EIPGVSNQFFL 118 (267)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCC--CCTTCBHHHHH
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcc--ccccccHHHHH
Confidence 45678888888 554 5999999 9999 4789999986531 23999999975 68888998877
Q ss_pred Hhh-------cC---CCH----HHHHHHHHhCCCCC-ccccCCCC-CCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q psy2681 66 MKL-------FN---LPY----EKSRRQLGMFGLPS-YAHTIPIR-DLSGGQKARVALAELTLNNPDILILDEPTNNLDI 129 (211)
Q Consensus 66 ~~~-------~~---~~~----~~~~~~l~~~gl~~-~~~~~~~~-~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~ 129 (211)
... .. ... +++.++++.+|+.. ..+ +++. +|||||||||+|||||+.+|++|||||||+|||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT-RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTT-SBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred HHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhc-CCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 421 11 122 34678899999964 444 4676 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChHHH
Q psy2681 130 ESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 130 ~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.++..+.++|+++ +.|||+||||++++..+ ||++++|++|+++. .|+.+++
T Consensus 198 ~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 252 (267)
T 2zu0_C 198 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLV 252 (267)
T ss_dssp HHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999876 46999999999999886 89999999999974 5665544
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=249.36 Aligned_cols=174 Identities=21% Similarity=0.273 Sum_probs=141.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-. ++|||++ |+|+++|++|+|..++ +..|||+||++. +| ..|+.+|+...
T Consensus 76 ~i~~Ge~vaiv-G~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~Tv~eNi~~~ 151 (306)
T 3nh6_A 76 TVMPGQTLALV-GPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV--LF-NDTIADNIRYG 151 (306)
T ss_dssp EECTTCEEEEE-SSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCC--CC-SEEHHHHHHTT
T ss_pred EEcCCCEEEEE-CCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCc--cC-cccHHHHHHhh
Confidence 35678889999 555 4999999 9999999999998754 346999999975 55 46999998743
Q ss_pred c-CCCHHHHHHHHHhCCCC-----------CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ......+.++++.+++. ..... +..+|||||||||+|||||+.+|++|||||||++||+.+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~ 230 (306)
T 3nh6_A 152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230 (306)
T ss_dssp STTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH
Confidence 2 23445555555555443 23333 56799999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.++ +.|+|+|||+++.+.. ||+|++|++|+++. .|+.+++.+
T Consensus 231 ~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 231 ASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLS 277 (306)
T ss_dssp HHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999875 5799999999999987 99999999999975 678777654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=237.55 Aligned_cols=171 Identities=24% Similarity=0.291 Sum_probs=135.0
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +++|+||++. +++. |+.+++............+.+
T Consensus 31 i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~ 104 (229)
T 2pze_A 31 IERGQLLAVA-GSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--IMPG-TIKENIIFGVSYDEYRYRSVI 104 (229)
T ss_dssp EETTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--CCSB-CHHHHHHTTSCCCHHHHHHHH
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--ccCC-CHHHHhhccCCcChHHHHHHH
Confidence 4567888888 554 5999999 9999999999999876 5999999975 5664 999998753322333344455
Q ss_pred HhCCCCCccc----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc--CCeEE
Q psy2681 81 GMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY--QGGVI 147 (211)
Q Consensus 81 ~~~gl~~~~~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~--~~tii 147 (211)
+.+++.+... .+++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.+ .++ +.|||
T Consensus 105 ~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi 184 (229)
T 2pze_A 105 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184 (229)
T ss_dssp HHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEE
T ss_pred HHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 5555432111 1245899999999999999999999999999999999999999999974 443 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+||||++++. .||++++|++|+++. .|+.+++.
T Consensus 185 ~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 217 (229)
T 2pze_A 185 LVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 217 (229)
T ss_dssp EECCCHHHHH-HCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEcCChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999986 599999999999864 56766543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=244.95 Aligned_cols=172 Identities=19% Similarity=0.288 Sum_probs=137.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCc--ccCCcceEEecCC------------eEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGE--LTPNKGELRKSPR------------LRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~--~~p~~G~i~~~~~------------~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|..+.++ |-+ ++|||++ |+|+ ++|++|+|..++. ..++|++|++. +++.+|+.+++
T Consensus 25 ~i~~Ge~~~l~-G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~--~~~~~tv~e~l 101 (250)
T 2d2e_A 25 VVPKGEVHALM-GPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPV--EVPGVTIANFL 101 (250)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC---CCSCBHHHHH
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCc--cccCCCHHHHH
Confidence 45678888888 554 5999999 9998 7899999986531 23789999875 67889999987
Q ss_pred Hhh----cC--CC----HHHHHHHHHhCCCC-CccccCCCCC-CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 66 MKL----FN--LP----YEKSRRQLGMFGLP-SYAHTIPIRD-LSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 66 ~~~----~~--~~----~~~~~~~l~~~gl~-~~~~~~~~~~-LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
... .+ .. .+++.++++.+|++ +..+ +++.+ |||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 102 RLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 531 12 12 23467889999995 5555 47888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhh-CCeEEEEeCCceeeecCChH
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~-~~~v~~l~~g~i~~~~g~~~ 179 (211)
.+.++|+++ +.|||+||||++++..+ ||++++|++|+++. .|+.+
T Consensus 181 ~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 181 VVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp HHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 999999876 46999999999999888 59999999999874 56655
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=240.83 Aligned_cols=163 Identities=21% Similarity=0.230 Sum_probs=135.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---c-
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F- 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~- 69 (211)
.+..|..+.++ |-+ ++|||++ ++|+++|++|+|..++ +..++|+||++. +++.+|+.+++... +
T Consensus 31 ~i~~Ge~~~ii-G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 31 TIEKGNVVNFH-GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp EEETTCCEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC--CCTTSBHHHHHHHHHHHTT
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc--CCCCCCHHHHHHHHHHhcC
Confidence 35677888888 554 5999999 9999999999998764 246999999975 67888999988532 1
Q ss_pred -CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG 145 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t 145 (211)
....+++.++++.+|++.. + +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++ +.|
T Consensus 108 ~~~~~~~~~~~l~~~gl~~~-~-~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 108 VKVNKNEIMDALESVEVLDL-K-KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp CCCCHHHHHHHHHHTTCCCT-T-SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred CchHHHHHHHHHHHcCCCcC-C-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 2235667889999999877 5 478999999999999999999999999999999999999999999999765 469
Q ss_pred EEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 146 VILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
||++|||++++..+|++++. ..|++
T Consensus 186 iiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 186 VIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp EEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred EEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999999999998887763 34544
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=238.37 Aligned_cols=172 Identities=20% Similarity=0.221 Sum_probs=135.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ .++|+||++. ++..|+.+++............+++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~---~~~~tv~enl~~~~~~~~~~~~~~~ 101 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW---IQNDSLRENILFGCQLEEPYYRSVI 101 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC---CCSEEHHHHHHTTSCCCTTHHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc---CCCcCHHHHhhCccccCHHHHHHHH
Confidence 356778888884443 5999999 9999999999999876 5999999874 3578999998653222222233333
Q ss_pred HhCCCC------C-----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---hc--CC
Q psy2681 81 GMFGLP------S-----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NY--QG 144 (211)
Q Consensus 81 ~~~gl~------~-----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~---~~--~~ 144 (211)
+.+++. + ... +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|. ++ +.
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~ 180 (237)
T 2cbz_A 102 QACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180 (237)
T ss_dssp HHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTS
T ss_pred HHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCC
Confidence 333321 1 123 4789999999999999999999999999999999999999999999984 32 56
Q ss_pred eEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 145 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|||+||||++.+. .||++++|++|+++. .|+.+++.
T Consensus 181 tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 216 (237)
T 2cbz_A 181 TRILVTHSMSYLP-QVDVIIVMSGGKISE-MGSYQELL 216 (237)
T ss_dssp EEEEECSCSTTGG-GSSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEEEecChHHHH-hCCEEEEEeCCEEEE-eCCHHHHh
Confidence 9999999999875 699999999999864 57766653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=237.91 Aligned_cols=173 Identities=22% Similarity=0.263 Sum_probs=139.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.++ |-+ ++|||++ |+|+++| +|+|..++ +..++|+||++. +++ .|+.+++...
T Consensus 42 ~i~~Ge~~~i~-G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~ 116 (260)
T 2ghi_A 42 FIPSGTTCALV-GHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTI--LFN-ETIKYNILYG 116 (260)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCC--CCS-EEHHHHHHTT
T ss_pred EECCCCEEEEE-CCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCc--ccc-cCHHHHHhcc
Confidence 35678888888 554 5999999 9999987 89998653 235999999975 554 5999998642
Q ss_pred c-CCCHHHHHHHHHhCCCCCccc----------cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 69 F-NLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 69 ~-~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
. ....+++.++++.+++.+... .+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 117 KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196 (260)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 2 234455667777777643211 13578999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|+++ +.|||+||||++.+. .||++++|++|+++. .|+.+++.
T Consensus 197 ~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 241 (260)
T 2ghi_A 197 AVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLL 241 (260)
T ss_dssp HHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99876 569999999999886 599999999999874 57776654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=249.43 Aligned_cols=173 Identities=20% Similarity=0.218 Sum_probs=145.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+++ ++|+|..+. ++.+||+||++. +|+ +|+.+|+....
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~--lf~-~tv~enl~~~~ 118 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVF--IFS-GTFRKNLDPNA 118 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCC--CCS-EEHHHHHCTTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcc--cCc-cCHHHHhhhcc
Confidence 356778888884443 4999999 999998 899998654 246999999975 565 69999986444
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCC-----------CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRD-----------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
....+++.++++.+++.+..++ ++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.
T Consensus 119 ~~~~~~v~~~l~~~~L~~~~~~-~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 119 AHSDQEIWKVADEVGLRSVIEQ-FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp CSCHHHHHHHHHHTTCHHHHTT-STTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCHHHHhh-cccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 4556778899999999877765 6677 999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|++. +.|+|+||||++.+ ..||++++|++|+++. .|++.++.
T Consensus 198 l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~-~g~~~el~ 241 (390)
T 3gd7_A 198 LKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQ-YDSILELY 241 (390)
T ss_dssp HHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEE-ESSHHHHH
T ss_pred HHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9876 56999999998765 4699999999999975 57776654
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=235.80 Aligned_cols=172 Identities=23% Similarity=0.290 Sum_probs=134.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..+. +++|+||++. +++ .|+.+++. ..........+.+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~~-~tv~enl~-~~~~~~~~~~~~~ 133 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--IMP-GTIKENII-GVSYDEYRYRSVI 133 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--CCS-SBHHHHHH-TTCCCHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--cCc-ccHHHHhh-CcccchHHHHHHH
Confidence 456788889994443 5999999 9999999999999876 5999999875 566 49999987 3222333344555
Q ss_pred HhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc--CCeEE
Q psy2681 81 GMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY--QGGVI 147 (211)
Q Consensus 81 ~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~--~~tii 147 (211)
+.+++.+.... +++.+|||||||||+|||||+.+|+++||||||+|||+.++..+++.+ .++ +.|||
T Consensus 134 ~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tvi 213 (290)
T 2bbs_A 134 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213 (290)
T ss_dssp HHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEE
T ss_pred HHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEE
Confidence 55665322111 135799999999999999999999999999999999999999999974 343 57999
Q ss_pred EEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+||||++.+. .||++++|++|+++. .|+.+++.
T Consensus 214 ivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 246 (290)
T 2bbs_A 214 LVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 246 (290)
T ss_dssp EECCCHHHHH-HSSEEEEEETTEEEE-EECHHHHH
T ss_pred EEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHHh
Confidence 9999999986 599999999999864 57776653
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=252.06 Aligned_cols=175 Identities=22% Similarity=0.252 Sum_probs=144.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.++||+||++. +++ .|+.+|+....
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~ 441 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH--LFN-DTIANNIAYAA 441 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCc--ccc-ccHHHHHhccC
Confidence 456788899994443 5999999 9999999999998653 346999999975 565 59999987432
Q ss_pred --CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 --NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 --~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.+.+++.++++.+++.+...+ .+..+||||||||++||||++.+|+++||||||++||+.+...+.+
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b5x_A 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521 (582)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 3456677788888877543322 1457999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|++. +.|+|+|||+++.+. .||++++|++|+++. .|+.+++.
T Consensus 522 ~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 522 ALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLL 566 (582)
T ss_pred HHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99876 579999999999986 699999999999975 67777654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=250.68 Aligned_cols=172 Identities=25% Similarity=0.281 Sum_probs=142.6
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-c-C-CCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F-N-LPYEKSR 77 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~-~-~~~~~~~ 77 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|.. ...++|++|++. .++.+|+.+++... . . ...+.+.
T Consensus 309 i~~Ge~~~i~-G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~ 383 (538)
T 1yqt_A 309 IKKGEVIGIV-GPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKT 383 (538)
T ss_dssp EETTCEEEEE-CCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHH
Confidence 4578899999 665 5999999 99999999999976 347999999875 45678888776532 1 1 1345577
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecCh
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE 153 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~ 153 (211)
++++.+++.+..+ +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||+
T Consensus 384 ~~l~~~~l~~~~~-~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 384 ELLKPLGIIDLYD-REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp HTTTTTTCGGGTT-SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred HHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 8999999986665 489999999999999999999999999999999999999999999998764 67999999999
Q ss_pred HHHHhhCCeEEEEeC--CceeeecCChHHHH
Q psy2681 154 RLIRETDCELWALEK--KNIRKFNGDFDDYR 182 (211)
Q Consensus 154 ~~~~~~~~~v~~l~~--g~i~~~~g~~~~~~ 182 (211)
+++..+||++++|++ |.+. ..|++.++.
T Consensus 463 ~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~ 492 (538)
T 1yqt_A 463 LMIDYVSDRLMVFEGEPGKYG-RALPPMGMR 492 (538)
T ss_dssp HHHHHHCSEEEEEEEETTTEE-EECCCEEHH
T ss_pred HHHHHhCCEEEEEeCCcceEe-ecCCHHHHH
Confidence 999999999999986 5554 346665544
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=253.17 Aligned_cols=173 Identities=26% Similarity=0.288 Sum_probs=142.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh-c-C-CCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F-N-LPYEKSR 77 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~-~-~-~~~~~~~ 77 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|.. ...+||+||++. .++.+|+.+++... . . .....+.
T Consensus 379 v~~Gei~~i~-G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~ 453 (607)
T 3bk7_A 379 IRKGEVIGIV-GPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKT 453 (607)
T ss_dssp EETTCEEEEE-CCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHH
T ss_pred cCCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHH
Confidence 4568889999 665 5999999 99999999999976 357999999874 45678998876532 1 1 1234567
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecCh
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE 153 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~ 153 (211)
++++.+|+.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||+
T Consensus 454 ~~l~~~~l~~~~~~-~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 454 ELLKPLGIIDLYDR-NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp HTHHHHTCTTTTTS-BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 88999999876664 88999999999999999999999999999999999999999999999764 67999999999
Q ss_pred HHHHhhCCeEEEEeC--CceeeecCChHHHHH
Q psy2681 154 RLIRETDCELWALEK--KNIRKFNGDFDDYRE 183 (211)
Q Consensus 154 ~~~~~~~~~v~~l~~--g~i~~~~g~~~~~~~ 183 (211)
+++..+||++++|++ |.+. ..|++.++..
T Consensus 533 ~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred HHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence 999999999999985 5554 3466655443
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-32 Score=250.77 Aligned_cols=176 Identities=22% Similarity=0.236 Sum_probs=144.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.++||+||++. +++ .|+.+|+....
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~ 441 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH--LFN-DTVANNIAYAR 441 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC--CCS-SBHHHHHHTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc--CCC-CCHHHHHhccC
Confidence 456788899994443 5999999 9999999999998654 236999999975 565 59999997532
Q ss_pred --CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 --NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 --~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
+.+.+++.++++.+++.+...+ .+..+||||||||++||||++.+|+++||||||++||+.+...+.+
T Consensus 442 ~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b60_A 442 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 (582)
T ss_dssp TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence 3456777888888877543222 2457999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+++. +.|+|+|||+++.+. .||++++|++|+++. .|+.+++.+
T Consensus 522 ~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b60_A 522 ALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 567 (582)
T ss_dssp HHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHH
Confidence 99875 679999999999886 699999999999975 577776543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-32 Score=248.91 Aligned_cols=176 Identities=26% Similarity=0.285 Sum_probs=142.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ ++++||++|++. +++. |+.+|+....
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~-tv~eni~~~~ 439 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI--LFSD-TVKENILLGR 439 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC--CCSS-BHHHHHGGGC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCc--cCcc-cHHHHHhcCC
Confidence 456788899994333 5999999 9999999999998764 246999999975 5654 9999986432
Q ss_pred -CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
....+++.+.++..++.+.... .+..+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~ 519 (578)
T 4a82_A 440 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519 (578)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 2345666667776665432221 13468999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++. +.|+|+|||+++.+.. ||++++|++|+++. .|+.+++.+
T Consensus 520 l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el~~ 564 (578)
T 4a82_A 520 LDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIA 564 (578)
T ss_dssp HHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9765 5699999999999865 99999999999975 688877653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-32 Score=250.25 Aligned_cols=176 Identities=22% Similarity=0.253 Sum_probs=143.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.++||++|++. +++ .|+.+|+....
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~tv~eni~~~~ 453 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI--LFS-TTVKENLKYGN 453 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC--CCS-SBHHHHHHSSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc--ccc-ccHHHHHhcCC
Confidence 466788999994443 5999999 9999999999998754 346999999975 554 59999986432
Q ss_pred -CCCHHHHHHHHHhCCCCCccccC----------CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
..+.+++.++++.+++.+..... ...+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 533 (598)
T 3qf4_B 454 PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533 (598)
T ss_dssp TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 23445566777777765433321 1268999999999999999999999999999999999999999999
Q ss_pred HHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 139 IKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 139 l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+++. +.|+|+|||+++.+.. ||++++|++|+++. .|+.+++.+
T Consensus 534 l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 534 MWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp HHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHH
T ss_pred HHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9875 6799999999999875 89999999999975 688877643
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.6e-32 Score=247.29 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=141.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.+++|+||++. ++. .|+.+|+....
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~-~tv~eni~~~~ 441 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV--LFS-GTIKENLKWGR 441 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCC--CCS-EEHHHHHTTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCc--CcC-ccHHHHHhccC
Confidence 466788999994333 5999999 9999999999998754 346999999975 564 59999986432
Q ss_pred -CCCHHHHHHHHHhCC-----------CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++.+.++..+ ++....+ +..+||||||||++||||++.+|+++||||||++||+.+...+.+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~ 520 (587)
T 3qf4_A 442 EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520 (587)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 234455555554444 3333343 678999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+++. +.|+|+|||+++.+. .||++++|++|+++. .|+.+++.+
T Consensus 521 ~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 521 GLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp HHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99875 579999999999986 799999999999975 688877654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-32 Score=246.59 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=136.6
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC----CCHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKS 76 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~----~~~~~~ 76 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|.... ..++|++|+.. .....|+.+++..... .....+
T Consensus 291 i~~Gei~~i~-G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~ 366 (538)
T 3ozx_A 291 AKEGEIIGIL-GPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIF--PNYDGTVQQYLENASKDALSTSSWFF 366 (538)
T ss_dssp EETTCEEEEE-CCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCC--CCCSSBHHHHHHHHCSSTTCTTSHHH
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhcc--cccCCCHHHHHHHhhhhccchhHHHH
Confidence 4567888888 665 5999999 9999999999998653 46999999864 3457789988764321 123456
Q ss_pred HHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecC
Q psy2681 77 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 152 (211)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd 152 (211)
.++++.+++.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||
T Consensus 367 ~~~l~~~~l~~~~~~-~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 367 EEVTKRLNLHRLLES-NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHTTTTTTGGGCTTS-BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHcCCHHHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 788999999877664 89999999999999999999999999999999999999999999998764 5799999999
Q ss_pred hHHHHhhCCeEEEEeCC
Q psy2681 153 ERLIRETDCELWALEKK 169 (211)
Q Consensus 153 ~~~~~~~~~~v~~l~~g 169 (211)
++++..+||++++|+++
T Consensus 446 l~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 446 LSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHHHCSEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeCC
Confidence 99999999999999863
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=243.09 Aligned_cols=170 Identities=19% Similarity=0.236 Sum_probs=139.0
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc-C--CCHHHHHHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-N--LPYEKSRRQL 80 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~--~~~~~~~~~l 80 (211)
|+.+.++ |-+ ++|||++ |+|+++|++|+.. ....++|++|+.. .....++.+++.... . .....+.+++
T Consensus 378 GEiv~ii-G~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 452 (608)
T 3j16_B 378 SEILVMM-GENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVV 452 (608)
T ss_dssp TCEEEEE-SCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCC--CCCCSBHHHHHHHHCSSTTTSHHHHHHTH
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEeccccc--ccCCccHHHHHHHHhhcccccHHHHHHHH
Confidence 4667888 665 5999999 9999999999742 3456999999864 344568888765322 1 2345567889
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeEEEEecChHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLI 156 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~tiiivsHd~~~~ 156 (211)
+.+++.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||++++
T Consensus 453 ~~l~l~~~~~~-~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 453 KPLRIDDIIDQ-EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp HHHTSTTTSSS-BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHcCChhhhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999887765 89999999999999999999999999999999999999999999988764 67999999999999
Q ss_pred HhhCCeEEEEeC--CceeeecCChHHHHH
Q psy2681 157 RETDCELWALEK--KNIRKFNGDFDDYRE 183 (211)
Q Consensus 157 ~~~~~~v~~l~~--g~i~~~~g~~~~~~~ 183 (211)
..+|||+++|++ |+++ ..|++.++..
T Consensus 532 ~~~aDrvivl~~~~g~~~-~~g~p~~~~~ 559 (608)
T 3j16_B 532 TYLADKVIVFEGIPSKNA-HARAPESLLT 559 (608)
T ss_dssp HHHCSEEEECEEETTTEE-ECCCCEEHHH
T ss_pred HHhCCEEEEEeCCCCeEE-ecCChHHHhh
Confidence 999999999986 6665 4566655543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=249.78 Aligned_cols=171 Identities=36% Similarity=0.577 Sum_probs=137.5
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCC--CCCCCCHHHHHHh---------
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEH--LFPDDTPCEYLMK--------- 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~--l~~~~t~~e~~~~--------- 67 (211)
+++..|.++.++ |-+ ++|||+| |+|+++|++|+|..++..+++|++|++... ...+.|+.+++..
T Consensus 694 l~I~~GeivaIi-GpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~ 772 (986)
T 2iw3_A 694 FQCSLSSRIAVI-GPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRE 772 (986)
T ss_dssp EEEETTCEEEEC-SCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTT
T ss_pred EEEcCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhh
Confidence 567889999999 665 4999999 999999999999987666799999864100 0011122222110
Q ss_pred --------------------------------------------------------------------------------
Q psy2681 68 -------------------------------------------------------------------------------- 67 (211)
Q Consensus 68 -------------------------------------------------------------------------------- 67 (211)
T Consensus 773 ~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~ 852 (986)
T 2iw3_A 773 TMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVE 852 (986)
T ss_dssp TTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHH
T ss_pred hhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhh
Confidence
Q ss_pred -------------------hcCCCHHHHHHHHHhCCCCCcc-ccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 68 -------------------LFNLPYEKSRRQLGMFGLPSYA-HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 68 -------------------~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
........+.++++.+||.... .++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 853 ~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gL 932 (986)
T 2iw3_A 853 SHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTC
T ss_pred hHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 0011245677899999997532 23478999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 128 DIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 128 D~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
|+.+...+.+.|+++++|||+||||++++..+|+++++|.+|+++.
T Consensus 933 D~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 933 DRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp CHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred CHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999998899999999999999999999999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-30 Score=233.15 Aligned_cols=160 Identities=24% Similarity=0.266 Sum_probs=129.8
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEE---------ec-------------CCeEEEEEeCCCCCCCCC-
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR---------KS-------------PRLRIGKFDQHSGEHLFP- 57 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~---------~~-------------~~~~ig~v~q~~~~~l~~- 57 (211)
+..|..+.++ |-+ ++|||+| |+|+++|++|++. .. ....+++++|... .++
T Consensus 44 i~~Ge~~~Lv-G~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~--~~~~ 120 (538)
T 1yqt_A 44 VKEGMVVGIV-GPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVD--LIPK 120 (538)
T ss_dssp CCTTSEEEEE-CCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGG--GSGG
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhh--hcch
Confidence 5678899999 554 5999999 9999999999841 11 1235788888643 111
Q ss_pred --CCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 58 --DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 58 --~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
..++.+++.... ..+++.++++.+|++...++ ++.+|||||||||+||+||+.+|++||||||||+||+.++.++
T Consensus 121 ~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~~-~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l 197 (538)
T 1yqt_A 121 AVKGKVIELLKKAD--ETGKLEEVVKALELENVLER-EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNA 197 (538)
T ss_dssp GCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTTS-BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 136777664321 12357789999999877664 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 136 AEAIKNY---QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 136 ~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
.++|+++ +.|||+||||++++..+||++++|+++
T Consensus 198 ~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 198 ARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999765 679999999999999999999999865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-30 Score=234.55 Aligned_cols=161 Identities=22% Similarity=0.242 Sum_probs=130.5
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEE---------ec-------------CCeEEEEEeCCCC--CCCC
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR---------KS-------------PRLRIGKFDQHSG--EHLF 56 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~---------~~-------------~~~~ig~v~q~~~--~~l~ 56 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|++. .. ....+++++|... +.++
T Consensus 114 i~~Ge~~~Li-G~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 114 VKDGMVVGIV-GPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCTTSEEEEE-CCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCEEEEE-CCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 4678889999 554 5999999 9999999999851 11 1234788888642 1111
Q ss_pred CCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 57 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 57 ~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
..++.+++... ...+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++||||||||+||+.++..+.
T Consensus 193 -~~tv~e~l~~~--~~~~~~~~~L~~lgL~~~~~~-~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~ 268 (607)
T 3bk7_A 193 -KGKVRELLKKV--DEVGKFEEVVKELELENVLDR-ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268 (607)
T ss_dssp -CSBHHHHHHHT--CCSSCHHHHHHHTTCTTGGGS-BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred -cccHHHHhhhh--HHHHHHHHHHHHcCCCchhCC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 23788877532 122457789999999887764 89999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 137 EAIKNY---QGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 137 ~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
++|+++ +.|||+||||++++..+||++++|.++
T Consensus 269 ~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 269 RVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 999876 679999999999999999999999865
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=246.54 Aligned_cols=174 Identities=22% Similarity=0.274 Sum_probs=139.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++--. ++|||++ +.|+++|++|+|..++ +.++||++|++. ++. .|+.+|+....
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~~-~ti~eNi~~g~ 488 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV--LFA-TTIAENIRYGR 488 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCC--CCS-SCHHHHHHHHC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCc--cCC-ccHHHHHhcCC
Confidence 466788999994443 5999999 9999999999998764 346999999985 565 49999997543
Q ss_pred -CCCHHHHHHHHHhCCCC-----------CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++.+.++..++. ..... +..+||||||||++||||++.+|++||||||||+||+.+...+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 34455555555544432 22222 456899999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.++.. +.|+|+|||+++.+.. ||++++|++|+++. .|+++++.
T Consensus 568 ~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~-~g~~~~l~ 612 (1284)
T 3g5u_A 568 ALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE-QGNHDELM 612 (1284)
T ss_dssp HHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-EECHHHHH
T ss_pred HHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHH
Confidence 98754 6799999999999976 89999999999975 67777654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=247.68 Aligned_cols=175 Identities=23% Similarity=0.312 Sum_probs=139.8
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|.++.++ |-. ++|||++ +.|+++|++|+|..++ +.+++|+||++. ++ ..|+.+|+...
T Consensus 1055 ~i~~Ge~v~iv-G~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1055 EVKKGQTLALV-GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI--LF-DCSIAENIAYG 1130 (1284)
T ss_dssp EECSSSEEEEE-CSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCC--CC-SSBHHHHHTCC
T ss_pred EEcCCCEEEEE-CCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCc--cc-cccHHHHHhcc
Confidence 35678899999 664 5999999 9999999999998653 457999999984 44 57999998632
Q ss_pred c---CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q psy2681 69 F---NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 135 (211)
Q Consensus 69 ~---~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l 135 (211)
. ..+.+.+.+.++..++.+...+ ....+|||||||||+|||||+.+|++|||||||+|||+.+...+
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2 2345555555555544322111 13468999999999999999999999999999999999999999
Q ss_pred HHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 136 AEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 136 ~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+.|++. +.|+|+||||++.+.. ||++++|++|++++ .|+++++.+
T Consensus 1211 ~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1211 QEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999875 5699999999999865 99999999999976 578777654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=237.67 Aligned_cols=174 Identities=24% Similarity=0.367 Sum_probs=139.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-cc-CcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHh-hcCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PK-GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRR 78 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~-G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~-~~~~~~~~~~~ 78 (211)
.+..|.++.+++.-. ++|||+| |+ |.+ .|. ......+++|++|++. .+++.+|+.+++.. ..+. .+++.+
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~~~ltv~e~l~~~~~~~-~~~v~~ 530 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTHSDTSVLDFVFESGVGT-KEAIKD 530 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCCTTSBHHHHHHTTCSSC-HHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccccCCcHHHHHHHhhcCH-HHHHHH
Confidence 456788999994443 5999999 87 443 121 0011234788888752 35778899998864 1122 567888
Q ss_pred HHHhCCCC-CccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHH
Q psy2681 79 QLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 157 (211)
Q Consensus 79 ~l~~~gl~-~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~ 157 (211)
+++.+|+. ...+ +++.+|||||||||+|||||+.+|++|||||||||||+.++.++.++|++.+.|||+||||++++.
T Consensus 531 ~L~~lgL~~~~~~-~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 531 KLIEFGFTDEMIA-MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLD 609 (986)
T ss_dssp HHHHTTCCHHHHH-SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHH
T ss_pred HHHHcCCChhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 99999996 4444 488999999999999999999999999999999999999999999999987779999999999999
Q ss_pred hhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 158 ETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 158 ~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.+||++++|++|+++.+.|+++++..
T Consensus 610 ~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 610 NVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999998766788887653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=246.04 Aligned_cols=176 Identities=22% Similarity=0.272 Sum_probs=144.9
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
+.+..|.++.++ |-. ++|||++ +.|++.|++|+|..++ |.+++||||+|. +| +-|+.+|+..
T Consensus 1100 l~I~~Ge~vaIV-G~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~--LF-~gTIreNI~~ 1175 (1321)
T 4f4c_A 1100 FSVEPGQTLALV-GPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT--LF-DCSIAENIIY 1175 (1321)
T ss_dssp EEECTTCEEEEE-CSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCC--CC-SEEHHHHHSS
T ss_pred EEECCCCEEEEE-CCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCE--ee-CccHHHHHhc
Confidence 356789999999 554 5999999 9999999999998754 457999999985 55 4599999853
Q ss_pred h---cCCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 68 L---FNLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 68 ~---~~~~~~~~~~~l~~~gl~~~~-------~~---~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
. .+.+.+++.++++..++.+.. +. ..-..||||||||++|||||+.+|++||||||||+||+++...
T Consensus 1176 gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~ 1255 (1321)
T 4f4c_A 1176 GLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKV 1255 (1321)
T ss_dssp SSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHH
Confidence 2 234567788888877764321 11 1235799999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 135 LAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 135 l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.+.|++. ++|+|+|+|.++.+.. ||+|+||++|++++ .|+++++.+
T Consensus 1256 Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~ 1304 (1321)
T 4f4c_A 1256 VQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMS 1304 (1321)
T ss_dssp HHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999876 5799999999999865 69999999999987 588877654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-29 Score=225.29 Aligned_cols=162 Identities=24% Similarity=0.265 Sum_probs=125.1
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEE-----------ecC-------------CeEEEEEeCCCCC-CCC
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELR-----------KSP-------------RLRIGKFDQHSGE-HLF 56 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~-----------~~~-------------~~~ig~v~q~~~~-~l~ 56 (211)
..|..+.++ |=+ ++|||+| |+|+++|++|++. ... ...+...+|.... ..+
T Consensus 23 ~~Gei~gLi-GpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 23 KNNTILGVL-GKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CTTEEEEEE-CCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCEEEEE-CCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 356778888 554 5999999 9999999999872 111 1123444443210 001
Q ss_pred CCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 57 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 57 ~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...++.+++.... ....+.++++.+|+....++ ++.+|||||||||+|||||+.+|++||||||||+||+.++.++.
T Consensus 102 ~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~-~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~ 178 (538)
T 3ozx_A 102 LKGTVNEILTKID--ERGKKDEVKELLNMTNLWNK-DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178 (538)
T ss_dssp CCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTS-BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred ccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 2235666553321 12346788999999877664 89999999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCc
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKN 170 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~ 170 (211)
++|+++ +.|||+||||++++..+||+++++.+|.
T Consensus 179 ~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 179 KAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999876 6799999999999999999999998654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=225.68 Aligned_cols=165 Identities=21% Similarity=0.239 Sum_probs=125.8
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCC----
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGE---- 53 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~---- 53 (211)
..|..+.++ |-+ ++|||+| |+|+++|++|+|.... .....+.+|....
T Consensus 101 ~~Gei~~Lv-GpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 101 RPGQVLGLV-GTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CTTSEEEEE-CCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCEEEEE-CCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence 457788888 554 5999999 9999999999983110 0011122222110
Q ss_pred CCCCCCCHHHHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q psy2681 54 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133 (211)
Q Consensus 54 ~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~ 133 (211)
...+..++.+++........+.+.++++.+|+....++ ++.+|||||||||+|||||+.+|++|||||||++||+.++.
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~ 258 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR-DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL 258 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGS-CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCC-ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence 00011234444433333345678899999999887765 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCce
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 171 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i 171 (211)
.+.++|+++ +.|||+||||++++..+||++++|.++..
T Consensus 259 ~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 259 NAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999876 56999999999999999999999987653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=240.10 Aligned_cols=173 Identities=23% Similarity=0.243 Sum_probs=142.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ +.|++.|++|+|..++ +.+||||+|+|. + .+.|+.+|+....
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~--L-f~~TI~eNI~~g~ 516 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA--L-FNCTIEENISLGK 516 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--C-CSEEHHHHHHTTC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcce--e-eCCchhHHHhhhc
Confidence 356788899995554 5999999 9999999999998764 347999999985 4 4569999997543
Q ss_pred -CCCHHHHHHHHHhCCCCCc-----------cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSY-----------AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~-----------~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
..+.+++.++++..++.+. ... .-..||||||||++||||++.+|+++|||||||+||+.+...+.+
T Consensus 517 ~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~ 595 (1321)
T 4f4c_A 517 EGITREEMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595 (1321)
T ss_dssp TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred ccchHHHHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence 3467777777777665322 222 346799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
.|.++ ++|+|+|||++..+. .||+|++|++|++++ .|+.+++
T Consensus 596 ~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive-~Gth~eL 639 (1321)
T 4f4c_A 596 ALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVE-VGDHRAL 639 (1321)
T ss_dssp HHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeec-cCCHHHH
Confidence 99875 679999999999885 579999999999976 5776654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=219.10 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=115.3
Q ss_pred cccccCeeeeecCCC--Cccccc---------------------c-ccCcccCCcceEE-------ec-------CCeEE
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFI---------------------K-PKGELTPNKGELR-------KS-------PRLRI 44 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl---------------------~-i~G~~~p~~G~i~-------~~-------~~~~i 44 (211)
.+..|..+.++ |-+ ++|||+ + +.|+..|+.|.+. .. .+..+
T Consensus 40 ~i~~Ge~~~li-GpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~i 118 (670)
T 3ux8_A 40 EIPRGKLVVLT-GLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTV 118 (670)
T ss_dssp EEETTSEEEEE-CSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBH
T ss_pred EECCCCEEEEE-CCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhce
Confidence 35678889999 665 599997 7 7888888855543 21 12234
Q ss_pred EEEeCCCC-----------------CCCCCCCCHHHHHHhhcCC--C---H----------HHHHHHHHhCCCCCccccC
Q psy2681 45 GKFDQHSG-----------------EHLFPDDTPCEYLMKLFNL--P---Y----------EKSRRQLGMFGLPSYAHTI 92 (211)
Q Consensus 45 g~v~q~~~-----------------~~l~~~~t~~e~~~~~~~~--~---~----------~~~~~~l~~~gl~~~~~~~ 92 (211)
|+++|.+. ...++.+|+.+++...... . . .....+++.+||.+...++
T Consensus 119 g~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 198 (670)
T 3ux8_A 119 GTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSR 198 (670)
T ss_dssp HHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTC
T ss_pred eeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcC
Confidence 45554322 1123455666665432110 0 0 0112358889998653335
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE-
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL- 166 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l- 166 (211)
++.+|||||||||+|||||+.+|+ +|||||||+|||+.++.++.++|+++ +.|||+||||++++. .||++++|
T Consensus 199 ~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~ 277 (670)
T 3ux8_A 199 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIG 277 (670)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEec
Confidence 889999999999999999999998 99999999999999999999998765 579999999999876 59999999
Q ss_pred -----eCCceeeecCChHHHH
Q psy2681 167 -----EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 167 -----~~g~i~~~~g~~~~~~ 182 (211)
++|+++ +.|+++++.
T Consensus 278 ~g~~~~~G~i~-~~g~~~~~~ 297 (670)
T 3ux8_A 278 PGAGIHGGEVV-AAGTPEEVM 297 (670)
T ss_dssp SSSGGGCCSEE-EEECHHHHH
T ss_pred ccccccCCEEE-EecCHHHHh
Confidence 788886 467776654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-25 Score=204.22 Aligned_cols=121 Identities=26% Similarity=0.340 Sum_probs=96.6
Q ss_pred CCHHHHHHhhcCCC-HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHH
Q psy2681 59 DTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDA 134 (211)
Q Consensus 59 ~t~~e~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~ 134 (211)
+++.+++....... ..+..+.+..+|+......+++.+|||||||||+|||||+.+| ++|||||||+|||+.++..
T Consensus 505 ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 505 MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 56666665432221 2345677888999754334588999999999999999999887 4999999999999999999
Q ss_pred HHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE------eCCceeeecCChHHH
Q psy2681 135 LAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDY 181 (211)
Q Consensus 135 l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~ 181 (211)
++++|+++ +.|||+||||++++. .||++++| ++|+++. .|+++++
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~-~g~~~~~ 638 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVA-VGTPEEV 638 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEE-EECHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEE-ecCHHHH
Confidence 99998765 679999999999884 69999999 7898864 5776654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-24 Score=202.09 Aligned_cols=107 Identities=27% Similarity=0.386 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEE
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVI 147 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tii 147 (211)
.+..++|+.+||......+++.+|||||||||+|||||+.+| ++|||||||+|||+.++..+++.|+++ +.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 345678999999754434588999999999999999999875 799999999999999999999998765 67999
Q ss_pred EEecChHHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 148 LVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 148 ivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
+||||++++.. ||++++| ++|+++ ..|+++++.
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~ 901 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIA 901 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHH
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHH
Confidence 99999999865 9999999 788886 468877654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-26 Score=207.04 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=136.0
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcc-e-EEecC--CeEEEEEeCCCCC-CCCCCCCHHHHHHhhc---C-C
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKG-E-LRKSP--RLRIGKFDQHSGE-HLFPDDTPCEYLMKLF---N-L 71 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G-~-i~~~~--~~~ig~v~q~~~~-~l~~~~t~~e~~~~~~---~-~ 71 (211)
.+..|.++.+++.-. ++|||+| |+|+.+|++| + |..+. ++.++|+||+... .+...+++.+++.... + .
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~ 213 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGAT 213 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcc
Confidence 356788999996554 5999999 9999999999 8 87653 5578999998631 1233456555542110 1 1
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHH--HhcCCCe----EEEeC-CCCCCCHHHHHHHHHHHHhcCC
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL--TLNNPDI----LILDE-PTNNLDIESIDALAEAIKNYQG 144 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iara--l~~~p~l----llLDE-Pt~gLD~~~~~~l~~~l~~~~~ 144 (211)
....+..+++.+|+.+..+ +.+|||||||||+|||| |+.+|++ +|||| ||++||+. ...+.+++++++.
T Consensus 214 ~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~ 289 (460)
T 2npi_A 214 LLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNV 289 (460)
T ss_dssp SSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCC
Confidence 1123446788899986543 67999999999999999 9999999 99999 99999999 8888888888888
Q ss_pred eEEEEecChH------HHHhhCCe-----EEEEe-CCceeeecCChHHHH
Q psy2681 145 GVILVSHDER------LIRETDCE-----LWALE-KKNIRKFNGDFDDYR 182 (211)
Q Consensus 145 tiiivsHd~~------~~~~~~~~-----v~~l~-~g~i~~~~g~~~~~~ 182 (211)
|+|+||||.+ ++..+||+ +++|. +|+++ .++..++.
T Consensus 290 tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~ 337 (460)
T 2npi_A 290 NIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR 337 (460)
T ss_dssp CEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred CEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence 9999999988 78889999 99999 89986 57776553
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=193.79 Aligned_cols=105 Identities=22% Similarity=0.332 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN---PDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 148 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~---p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii 148 (211)
++.++++.+||......+++.+|||||||||+||++|+.+ |++|||||||+|||+.++..+.++|+++ +.|||+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4567899999986433358899999999999999999996 7999999999999999999999998764 679999
Q ss_pred EecChHHHHhhCCeEEEE------eCCceeeecCChHHH
Q psy2681 149 VSHDERLIRETDCELWAL------EKKNIRKFNGDFDDY 181 (211)
Q Consensus 149 vsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~ 181 (211)
||||++++ ..||++++| ++|+++ +.|+++++
T Consensus 789 isHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el 825 (842)
T 2vf7_A 789 VEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEV 825 (842)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHH
T ss_pred EcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHH
Confidence 99999999 789999999 678886 46776654
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=153.84 Aligned_cols=75 Identities=36% Similarity=0.511 Sum_probs=68.3
Q ss_pred CCCCCCChHHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~ia------ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 162 (211)
+++.+||||||||++|| ||++.+|+++||||||+|||+.++..+.+.+.++ +.|||+||||.+ +...|++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCE
Confidence 47899999999999876 8999999999999999999999999999999876 469999999994 6789999
Q ss_pred EEEEe
Q psy2681 163 LWALE 167 (211)
Q Consensus 163 v~~l~ 167 (211)
+++|.
T Consensus 132 ii~l~ 136 (148)
T 1f2t_B 132 VIRIS 136 (148)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99994
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=171.17 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEE----eC
Q psy2681 97 LSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL----EK 168 (211)
Q Consensus 97 LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l----~~ 168 (211)
|||||||||+||++|+.+| ++|||||||+|||+.++.++.+.|+++ +.|||+||||++++ ..||++++| .+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 47999999999887 579999999 89
Q ss_pred Cceee
Q psy2681 169 KNIRK 173 (211)
Q Consensus 169 g~i~~ 173 (211)
|+++.
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=184.96 Aligned_cols=120 Identities=26% Similarity=0.335 Sum_probs=95.3
Q ss_pred CCHHHHHHhhcCCC-HHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHH
Q psy2681 59 DTPCEYLMKLFNLP-YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESID 133 (211)
Q Consensus 59 ~t~~e~~~~~~~~~-~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p---~lllLDEPt~gLD~~~~~ 133 (211)
+|+.+++..+.... ..+..++++.+||.. ... +++.+|||||||||+||++|+.+| ++|||||||+|||+.++.
T Consensus 807 ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~-~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~ 885 (972)
T 2r6f_A 807 MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLG-QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA 885 (972)
T ss_dssp SBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTT-CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHH
T ss_pred cCHHHHHHHHhcchhHHHHHHHHHHcCCCccccc-CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHH
Confidence 35555554322221 124567899999986 444 488999999999999999999865 999999999999999999
Q ss_pred HHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEE------eCCceeeecCChHHH
Q psy2681 134 ALAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRKFNGDFDDY 181 (211)
Q Consensus 134 ~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~ 181 (211)
.++++|+++ +.|||+||||++++ ..||++++| .+|+++. .|+++++
T Consensus 886 ~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~-~g~~~el 940 (972)
T 2r6f_A 886 RLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVA-VGTPEEV 940 (972)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEE-EESHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEE-ecCHHHH
Confidence 999998765 67999999999998 579999999 6788864 5665544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=186.79 Aligned_cols=106 Identities=28% Similarity=0.401 Sum_probs=91.1
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEe
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 150 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivs 150 (211)
..+.+..+||......+++.+|||||||||+|||||+.+|+ +|||||||+|||+....++.++|+++ +.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34578889997653335889999999999999999999887 99999999999999999999999876 46999999
Q ss_pred cChHHHHhhCCeEEEE------eCCceeeecCChHHHHH
Q psy2681 151 HDERLIRETDCELWAL------EKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 151 Hd~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~~ 183 (211)
||++++.. ||++++| ++|+++ +.|+++++.+
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLK 560 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHH
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEEE-Eeechhhhhc
Confidence 99999865 9999999 777775 5788877643
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.9e-22 Score=171.52 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=73.9
Q ss_pred CCCCCCChHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKARVALAELTL------NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 162 (211)
+++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+.+.|+++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 378899999999999999999 799999999999999999999999999876 5799999999998 567899
Q ss_pred EEEEeCCcee
Q psy2681 163 LWALEKKNIR 172 (211)
Q Consensus 163 v~~l~~g~i~ 172 (211)
+++|++|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999885
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-21 Score=180.82 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=87.2
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecC
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD 152 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd 152 (211)
+.|..+||......+++.+|||||+|||+||++|..+| ++|||||||+|||+....+|++.|+++ +.|||+||||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 35888999764233589999999999999999999985 999999999999999999999988764 6799999999
Q ss_pred hHHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 153 ERLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 153 ~~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
++++. .||++++| ++|+++ +.|+++++.
T Consensus 566 l~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~ 599 (972)
T 2r6f_A 566 EDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVM 599 (972)
T ss_dssp HHHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTT
T ss_pred HHHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHH
Confidence 99886 69999999 567775 567766543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=175.42 Aligned_cols=102 Identities=26% Similarity=0.343 Sum_probs=86.9
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
.+..+||......+++.+|||||||||+||++|+.+| .+|||||||++||+....+++++|+++ +.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 6888999865233588999999999999999999999 599999999999999999999988654 67999999999
Q ss_pred HHHHhhCCeEEEE------eCCceeeecCChHHHH
Q psy2681 154 RLIRETDCELWAL------EKKNIRKFNGDFDDYR 182 (211)
Q Consensus 154 ~~~~~~~~~v~~l------~~g~i~~~~g~~~~~~ 182 (211)
+++. .||++++| .+|+++ +.|+++++.
T Consensus 442 ~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~ 474 (842)
T 2vf7_A 442 DVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLK 474 (842)
T ss_dssp HHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGG
T ss_pred HHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHH
Confidence 9775 69999999 567665 567776653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-22 Score=160.68 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=85.3
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEe--------cCCeEEEEEeCCCCCCCCCCC-CHHHHHHhhcC-C
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK--------SPRLRIGKFDQHSGEHLFPDD-TPCEYLMKLFN-L 71 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~--------~~~~~ig~v~q~~~~~l~~~~-t~~e~~~~~~~-~ 71 (211)
..|..+.++ |-+ ++|||++ ++|+ +|++|+|.. ..+..+||+||++...+.... .....+ .. .
T Consensus 20 ~~Ge~~~li-G~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~---~~~~ 94 (208)
T 3b85_A 20 DTNTIVFGL-GPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDAL---RDMV 94 (208)
T ss_dssp HHCSEEEEE-CCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHH---TTTS
T ss_pred cCCCEEEEE-CCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHH---HHhc
Confidence 356778888 554 5999999 9999 999999842 123468999987622221111 111111 11 1
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEE
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILV 149 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiiv 149 (211)
....+.++++. |+ ||||||+|||||+.+|++|||||||+| ++..+.++|+++ +.||| |
T Consensus 95 ~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-v 154 (208)
T 3b85_A 95 EPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-V 154 (208)
T ss_dssp CTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-E
T ss_pred cHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-E
Confidence 22345555554 32 999999999999999999999999999 888999999876 45888 9
Q ss_pred ecChHHHHh
Q psy2681 150 SHDERLIRE 158 (211)
Q Consensus 150 sHd~~~~~~ 158 (211)
|||++++..
T Consensus 155 tHd~~~~~~ 163 (208)
T 3b85_A 155 TGDITQVDL 163 (208)
T ss_dssp EEC------
T ss_pred ECCHHHHhC
Confidence 999998764
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=134.51 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=74.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE
Q psy2681 92 IPIRDLSGGQKARVALAELTLN----NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
+++..||||||||++||++++. +|+++||||||+|||+.+...+.++|+++ +.++|++||+.... ..||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 3678999999999999999974 46999999999999999999999999876 35899999998765 68899985
Q ss_pred E--eCCceeeecCChHHHHH
Q psy2681 166 L--EKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 166 l--~~g~i~~~~g~~~~~~~ 183 (211)
+ .+|.......+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 4 46655444556655443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=146.75 Aligned_cols=86 Identities=23% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeE--
Q psy2681 92 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCEL-- 163 (211)
Q Consensus 92 ~~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v-- 163 (211)
.++..||+|||||++||+||+ .+|+++||||||++||+..+..+.++|+++ +.+||++||+.+ +...||++
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~ 293 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHG 293 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEE
Confidence 367899999999999999997 689999999999999999999999999887 569999999975 55688976
Q ss_pred EEEeCCceeeecCCh
Q psy2681 164 WALEKKNIRKFNGDF 178 (211)
Q Consensus 164 ~~l~~g~i~~~~g~~ 178 (211)
+++.+|.......+.
T Consensus 294 v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 294 VTMVNGVSAIVPVEV 308 (322)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEEeCCEEEEEEEEc
Confidence 788888765443333
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=157.09 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=69.8
Q ss_pred CCCCC-ChHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 93 PIRDL-SGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 93 ~~~~L-SgG~kqRv~iaral~~~p--~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
++..| ||||||||+||++++.+| ++|||||||+|||+.++..+.+.|+++ +.|||+||||++.+. .||++++|.
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~~ 471 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVE 471 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEe
Confidence 56788 999999999999999999 999999999999999999999999876 579999999999886 699999996
Q ss_pred CC
Q psy2681 168 KK 169 (211)
Q Consensus 168 ~g 169 (211)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=147.86 Aligned_cols=75 Identities=36% Similarity=0.532 Sum_probs=66.6
Q ss_pred CCCCCCChHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kq------Rv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~ 162 (211)
+++.+||||||| |+++|++++.+|++|||||||+|||+..+..+.++|+++ +.|||+||||.+ +...|++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~ 322 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH 322 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCE
Confidence 478999999999 678888888999999999999999999999999999875 459999999976 5678999
Q ss_pred EEEEe
Q psy2681 163 LWALE 167 (211)
Q Consensus 163 v~~l~ 167 (211)
+++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98875
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=135.33 Aligned_cols=152 Identities=12% Similarity=0.081 Sum_probs=102.3
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCC-cceEEe-----cCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPN-KGELRK-----SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 79 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~-~G~i~~-----~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~ 79 (211)
++.++ |-+ ++|||++ ++|.+... .|.... ..+..+||++|++. .. +++.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~----~~----~~~~------------- 59 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE----GK----KKIF------------- 59 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT----CC----EEEE-------------
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc----HH----HHHH-------------
Confidence 35556 554 4999999 99987432 332211 12346899988641 10 1110
Q ss_pred HHhCCCC--CccccCCCCCCChHHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcCCeEEEEe
Q psy2681 80 LGMFGLP--SYAHTIPIRDLSGGQKARVALAEL-----TLNNPDILILDE--PTNNLDIESIDALAEAIKNYQGGVILVS 150 (211)
Q Consensus 80 l~~~gl~--~~~~~~~~~~LSgG~kqRv~iara-----l~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~~tiiivs 150 (211)
..++.. .... +++.+||||||||++||+| ++.+|+++|||| ||++||+..+..+.+.+.+.+.|+|++|
T Consensus 60 -~~~~~~~~~~~~-~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~ 137 (178)
T 1ye8_A 60 -SSKFFTSKKLVG-SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137 (178)
T ss_dssp -EETTCCCSSEET-TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred -HhhcCCcccccc-ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 011111 1233 3678999999999999996 999999999999 9999999999999999988777788888
Q ss_pred ---cChHHHHhhCCeEEEEeCCceeee-cCChHHHHHHHHHH
Q psy2681 151 ---HDERLIRETDCELWALEKKNIRKF-NGDFDDYREKLLTS 188 (211)
Q Consensus 151 ---Hd~~~~~~~~~~v~~l~~g~i~~~-~g~~~~~~~~~~~~ 188 (211)
||..++..++++ .+|+++.+ ..+.+++.+++.+.
T Consensus 138 H~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~~l~~~ 175 (178)
T 1ye8_A 138 PIRDVHPLVKEIRRL----PGAVLIELTPENRDVILEDILSL 175 (178)
T ss_dssp CSSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHHHHHHH
T ss_pred ccCCCchHHHHHHhc----CCcEEEEecCcCHHHHHHHHHHH
Confidence 599999999887 34444433 23444554444443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-20 Score=166.25 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=115.3
Q ss_pred eeeeecCCC-Ccccccc-ccCcccCCcceEEecCCe--EEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCC
Q psy2681 9 RIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRL--RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 84 (211)
Q Consensus 9 ~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~--~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~g 84 (211)
.+.+++.-. ++|||+| ++|+.+|++|+|...... +.++++|++ .++.+++.+++.... ....+.++++.++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~---~~~~ltv~D~~g~~~--~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP---NIPNVVFWDLPGIGS--TNFPPDTYLEKMK 145 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS---SCTTEEEEECCCGGG--SSCCHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc---ccCCeeehHhhcccc--hHHHHHHHHHHcC
Confidence 677884443 5999999 999999999999765421 137888874 345556555442211 1234678899999
Q ss_pred CCCccccCCCCCCChH--HHHHHHHHHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--------C-
Q psy2681 85 LPSYAHTIPIRDLSGG--QKARVALAELTLN----------NPDILILDEPTNNLDIESIDALAEAIKNY--------Q- 143 (211)
Q Consensus 85 l~~~~~~~~~~~LSgG--~kqRv~iaral~~----------~p~lllLDEPt~gLD~~~~~~l~~~l~~~--------~- 143 (211)
+.+... .+. ||+| |+||++||++++. +|++++|||||+|||+.++..+++.++++ +
T Consensus 146 L~~~~~--~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 146 FYEYDF--FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp GGGCSE--EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccCC--eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 876432 333 9999 9999999999999 99999999999999999999888877653 1
Q ss_pred ---CeEEEEecChHH--HHhhCCeEE-EEeCCc
Q psy2681 144 ---GGVILVSHDERL--IRETDCELW-ALEKKN 170 (211)
Q Consensus 144 ---~tiiivsHd~~~--~~~~~~~v~-~l~~g~ 170 (211)
.+|+++||++.. ++++++++. .|..|.
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 468899999887 888888875 455554
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=144.60 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=73.8
Q ss_pred CCCC-CCChHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCC
Q psy2681 92 IPIR-DLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 161 (211)
Q Consensus 92 ~~~~-~LSgG~kqRv~iaral~---------~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~ 161 (211)
++++ .||||||||++||++|+ .+|++|||||||++||+..+..+.+.+.++..|+|++||. +. .++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA 335 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence 3566 79999999999999999 8999999999999999999999999999887899999995 33 789
Q ss_pred eEEEEeCCceeeecCChH
Q psy2681 162 ELWALEKKNIRKFNGDFD 179 (211)
Q Consensus 162 ~v~~l~~g~i~~~~g~~~ 179 (211)
+++++++|+++. .|+..
T Consensus 336 ~i~~l~~G~i~~-~g~~~ 352 (359)
T 2o5v_A 336 LTLRAQAGRFTP-VADEE 352 (359)
T ss_dssp EEEEEETTEEEE-CCCTT
T ss_pred EEEEEECCEEEe-cCCHH
Confidence 999999999864 45544
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=137.35 Aligned_cols=76 Identities=30% Similarity=0.503 Sum_probs=67.6
Q ss_pred CCCCCCChHHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--CeEEEEecChHHHHhhCCe
Q psy2681 92 IPIRDLSGGQKARV------ALAELTLNN-PDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCE 162 (211)
Q Consensus 92 ~~~~~LSgG~kqRv------~iaral~~~-p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~tiiivsHd~~~~~~~~~~ 162 (211)
+++..|||||+||+ ++|++++.+ |+++||||||++||+..+..+.+.|.++. .+||+|||+.+ +...|++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 36689999999988 567899999 99999999999999999999999998863 48999999987 5788999
Q ss_pred EEEEeC
Q psy2681 163 LWALEK 168 (211)
Q Consensus 163 v~~l~~ 168 (211)
++++.+
T Consensus 355 ~~~l~k 360 (371)
T 3auy_A 355 IINVKK 360 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999873
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-17 Score=125.24 Aligned_cols=138 Identities=9% Similarity=0.068 Sum_probs=90.0
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
+..|..+.++ |-. ++|||++ +.+-....++. ...|+++|++.... ...++.+.+. ......
T Consensus 6 i~~gei~~l~-G~nGsGKSTl~~~~~~~~~~~~~d------~~~g~~~~~~~~~~-~~~~~~~~~~--------~~~~~~ 69 (171)
T 4gp7_A 6 IPELSLVVLI-GSSGSGKSTFAKKHFKPTEVISSD------FCRGLMSDDENDQT-VTGAAFDVLH--------YIVSKR 69 (171)
T ss_dssp EESSEEEEEE-CCTTSCHHHHHHHHSCGGGEEEHH------HHHHHHCSSTTCGG-GHHHHHHHHH--------HHHHHH
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHccCCeEEccH------HHHHHhcCcccchh-hHHHHHHHHH--------HHHHHH
Confidence 4456777777 665 5999999 65322221111 11266777653211 1111111111 111222
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH----------------HHHHHHHHHHh---
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----------------SIDALAEAIKN--- 141 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~----------------~~~~l~~~l~~--- 141 (211)
...|.....+ .....|+|||||++||+|++.+|++++|||||++||+. .+..+.+.+++
T Consensus 70 ~~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~ 147 (171)
T 4gp7_A 70 LQLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR 147 (171)
T ss_dssp HHTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH
T ss_pred HhCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh
Confidence 3345554444 34567999999999999999999999999999999999 55778887543
Q ss_pred cCCeEEEEecChHHHHhh
Q psy2681 142 YQGGVILVSHDERLIRET 159 (211)
Q Consensus 142 ~~~tiiivsHd~~~~~~~ 159 (211)
.+.|+|++|||++++..+
T Consensus 148 ~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 148 EGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HTCSEEEEECSHHHHHHE
T ss_pred cCCcEEEEeCCHHHhhhh
Confidence 377999999999999765
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=134.69 Aligned_cols=74 Identities=28% Similarity=0.366 Sum_probs=66.2
Q ss_pred CCCCCChHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEE
Q psy2681 93 PIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
++..||||||||++||++|+ .+|+++||||||++||+..+..+.++|+++ +.++|++||+...+ ..||++++
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~~ 408 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALVG 408 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEEE
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEEE
Confidence 45679999999999999999 589999999999999999999999999876 35999999997665 57899998
Q ss_pred Ee
Q psy2681 166 LE 167 (211)
Q Consensus 166 l~ 167 (211)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-17 Score=141.00 Aligned_cols=154 Identities=9% Similarity=0.040 Sum_probs=115.1
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..+.++ |.+ ++||+++ ++|.++|++|+|.... +..++|++|++. .+++..++.+++
T Consensus 99 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHHHHHHHHH
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHHHHHHHHH
Confidence 45566777 665 5999999 9999999999997532 124899999753 146667788877
Q ss_pred Hhhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 66 MKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 66 ~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.... +.. ..+++.+|+.+..++ ++.+|| |||++||||++.+|+ +|+|| ||+|||+.++. .++-++
T Consensus 177 ~~~~~~~~d----~~lldt~gl~~~~~~-~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~--~~~~~~ 245 (302)
T 3b9q_A 177 KRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEV 245 (302)
T ss_dssp HHHHHTTCS----EEEECCCCCSSCCHH-HHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHH
T ss_pred HHHHHcCCc----chHHhcCCCCcchhH-HHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--HHHHHh
Confidence 5321 111 135677888765554 678999 999999999999999 99999 99999998653 333335
Q ss_pred cCCeEEEEec---------ChHHHHhhCCeEEEEeCCcee
Q psy2681 142 YQGGVILVSH---------DERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 142 ~~~tiiivsH---------d~~~~~~~~~~v~~l~~g~i~ 172 (211)
.+.|+|++|| .++.+......+.++..|+.+
T Consensus 246 ~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 246 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 6789999999 567777888899999999753
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-16 Score=138.96 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=104.2
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 81 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~ 81 (211)
..|..+.++ |-. ++|||++ ++|...|. |+ ..+.+.+|++. ..+..+... .+.+.. + +.
T Consensus 279 ~~G~i~~i~-G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~------~~l~~~~~~-~g~~~~---~-~~ 339 (525)
T 1tf7_A 279 FKDSIILAT-GATGTGKTLLVSRFVENACAN-KE------RAILFAYEESR------AQLLRNAYS-WGMDFE---E-ME 339 (525)
T ss_dssp ESSCEEEEE-ECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCH------HHHHHHHHT-TSCCHH---H-HH
T ss_pred CCCcEEEEE-eCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCH------HHHHHHHHH-cCCCHH---H-HH
Confidence 345566666 553 5999999 99998885 43 12455666531 112222211 233322 2 22
Q ss_pred hCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH-----HHHHHHHHHHh---cCCeEEEEecCh
Q psy2681 82 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-----SIDALAEAIKN---YQGGVILVSHDE 153 (211)
Q Consensus 82 ~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~-----~~~~l~~~l~~---~~~tiiivsHd~ 153 (211)
.+|+....+. ++.+|||||+||+++|+++..+|+++|+| ||++||+. .+..+.++++. .+.|||++||+.
T Consensus 340 ~~g~~~~~~~-~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 340 RQNLLKIVCA-YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HTTSEEECCC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred hCCCEEEEEe-ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4555444443 67899999999999999999999999999 99999998 88887777654 477999999999
Q ss_pred ----------HHHHhhCCeEEEEeCCc
Q psy2681 154 ----------RLIRETDCELWALEKKN 170 (211)
Q Consensus 154 ----------~~~~~~~~~v~~l~~g~ 170 (211)
..+..+||++++|.+|.
T Consensus 418 ~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 418 QFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred cccCcccccCcccceeeeEEEEEEEEE
Confidence 78888999999998775
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-18 Score=144.36 Aligned_cols=133 Identities=11% Similarity=0.107 Sum_probs=83.9
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCC----CH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL----PY 73 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~----~~ 73 (211)
.+.++ |-+ ++|||+| |+|...|++|++...+ +..++|++|++. +++.+|+.+++...... ..
T Consensus 4 ~v~lv-G~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVV-GQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEE-ESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHH
Confidence 45666 443 5999999 9999999999886432 357999999865 66777777665422111 11
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
+.+.+++. ....+ +.+.+||||||||+++|||++. ++++|||+++||+.... +++.+.+. .+||+|.|..
T Consensus 81 ~~i~~~~~----~~~~~-~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 81 EPIEKYIN----EQYEK-FLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHH----HHHHH-HHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHHTT-SEEEEEETTG
T ss_pred HHHHHHHH----HHHHh-hhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHHhc-CcEEEEEecc
Confidence 23333333 22223 3568999999999999999886 99999999999998844 44455554 7888888876
Q ss_pred H
Q psy2681 154 R 154 (211)
Q Consensus 154 ~ 154 (211)
+
T Consensus 151 D 151 (270)
T 3sop_A 151 D 151 (270)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-16 Score=137.15 Aligned_cols=154 Identities=9% Similarity=0.040 Sum_probs=115.2
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..+.++ |.+ ++||+++ ++|.++|++|+|.... +..++|++|++. .+++..++.+++
T Consensus 156 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHHHHHHHHH
T ss_pred CCeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChhhhHHHHH
Confidence 35567777 776 5999999 9999999999997532 124899999752 145666777776
Q ss_pred Hhhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 66 MKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 66 ~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.... +.. ..+++.+|+.+..++ ++.+|| |||++||||++.+|+ +|+|| ||+|||+.++. ..+-..
T Consensus 234 ~~~~~~~~d----~~lldt~Gl~~~~~~-~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~ 302 (359)
T 2og2_A 234 KRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEV 302 (359)
T ss_dssp HHHHHTTCS----EEEEECCCCSSCCHH-HHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHH
T ss_pred HHHHhCCCH----HHHHHhcCCChhhhh-HHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHh
Confidence 5321 111 134677888765554 678999 999999999999999 99999 99999998653 333334
Q ss_pred cCCeEEEEec---------ChHHHHhhCCeEEEEeCCcee
Q psy2681 142 YQGGVILVSH---------DERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 142 ~~~tiiivsH---------d~~~~~~~~~~v~~l~~g~i~ 172 (211)
.+.|+|++|| .+..+......+.++..|..+
T Consensus 303 ~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 303 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 6789999999 467777788899999888653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.6e-17 Score=136.73 Aligned_cols=150 Identities=13% Similarity=0.018 Sum_probs=105.6
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh--cCC----CHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNL----PYEK 75 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~--~~~----~~~~ 75 (211)
...+..+.+++.-. ++|||++ |+|+++|+.|. ..+++++|++. +++. ++.+++... ++. ..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~------~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~ 157 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH------PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRA 157 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC------CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC------CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHH
Confidence 44566788884443 5999999 99999998774 46899999864 5555 787776422 121 2355
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~ 155 (211)
+.+.++.++ .+..+. ++..|||||+||+++|++++.+|++||+|||+..+|+.. ..+.+.-...|+++|+.+.
T Consensus 158 ~~~~L~~l~-~~~~~~-~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~ 230 (312)
T 3aez_A 158 LMRFVTSVK-SGSDYA-CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIED 230 (312)
T ss_dssp HHHHHHHHH-TTCSCE-EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHH
T ss_pred HHHHHHHhC-CCcccC-CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHH
Confidence 677888887 444333 577999999999999999999999999999999998521 1233333456888888866
Q ss_pred HH-hhCCeEEEEeCC
Q psy2681 156 IR-ETDCELWALEKK 169 (211)
Q Consensus 156 ~~-~~~~~v~~l~~g 169 (211)
.. +...|.+.+.++
T Consensus 231 ~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 231 IEQWYVSRFLAMRTT 245 (312)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 43 334454444444
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-18 Score=137.44 Aligned_cols=149 Identities=9% Similarity=-0.042 Sum_probs=96.8
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceE--Ee-----cCCeEEEEEeCCCCCCCCCCCCHHHHHH-------
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGEL--RK-----SPRLRIGKFDQHSGEHLFPDDTPCEYLM------- 66 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i--~~-----~~~~~ig~v~q~~~~~l~~~~t~~e~~~------- 66 (211)
+..|..+.++ |-. ++|||++ |+|+++...+.+ .. ..+..++|+||++. +++.+++.+++.
T Consensus 17 i~~Gei~~l~-GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~l~~~~~~~~ 93 (207)
T 1znw_A 17 AAVGRVVVLS-GPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT--RFQQLIDQGELLEWAEIHG 93 (207)
T ss_dssp --CCCEEEEE-CSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH--HHHHHHHTTCEEEEEEEGG
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH--HHHHHHhcCCceeehhhcC
Confidence 4567778888 554 5999999 999985322221 10 01235889998764 334333333221
Q ss_pred --hhcCCCHHHHHHH----------HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC----CHH
Q psy2681 67 --KLFNLPYEKSRRQ----------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL----DIE 130 (211)
Q Consensus 67 --~~~~~~~~~~~~~----------l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL----D~~ 130 (211)
..++.+.....+. ++.+|+....+. ++..|| +|+.+|++++|||||+++ |+.
T Consensus 94 n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~ 161 (207)
T 1znw_A 94 GLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-MPEAVT-----------VFLAPPSWQDLQARLIGRGTETADV 161 (207)
T ss_dssp GTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-CTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHH
T ss_pred chhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-cCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHH
Confidence 1112223222222 334444433333 567777 899999999999999998 788
Q ss_pred HHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 131 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 131 ~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
.+..+.++++++ +.|+|+||||++++..+|+++++|.
T Consensus 162 ~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 162 IQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 888898887654 4699999999999999999998874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-14 Score=122.14 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=83.5
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHh
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 82 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~ 82 (211)
..+..+.+++.-. ++|||++ ++|+++|++|.|.......+ .+..... .
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---------~~~~~~~---------------------~ 218 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---------VFKHHKN---------------------Y 218 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---------CCSSCSS---------------------E
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---------ccccchh---------------------E
Confidence 3466777775553 5999999 99999999999987542100 0000000 0
Q ss_pred CCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--C-CeEEEEecChHHHHhh
Q psy2681 83 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--Q-GGVILVSHDERLIRET 159 (211)
Q Consensus 83 ~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~-~tiiivsHd~~~~~~~ 159 (211)
+++ +.. |||+||++||+||..+|+++++||||+. + +.+.|+.+ + .|+|++||+.+ +...
T Consensus 219 i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~~l~~~~~g~~tvi~t~H~~~-~~~~ 280 (330)
T 2pt7_A 219 TQL--------FFG--GNITSADCLKSCLRMRPDRIILGELRSS---E----AYDFYNVLCSGHKGTLTTLHAGS-SEEA 280 (330)
T ss_dssp EEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHHHHHHHHTTCCCEEEEEECSS-HHHH
T ss_pred EEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHHHHHHHhcCCCEEEEEEcccH-HHHH
Confidence 000 001 8999999999999999999999999982 2 33444433 3 47999999999 6678
Q ss_pred CCeEEEEeCCce
Q psy2681 160 DCELWALEKKNI 171 (211)
Q Consensus 160 ~~~v~~l~~g~i 171 (211)
++|+++|.+|+.
T Consensus 281 ~dri~~l~~g~~ 292 (330)
T 2pt7_A 281 FIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHHTSG
T ss_pred hhhheehhcCCc
Confidence 899999988864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-16 Score=134.16 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=97.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHH-HHHhhcCCCHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE-YLMKLFNLPYEKSRRQ 79 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e-~~~~~~~~~~~~~~~~ 79 (211)
.+..|..+.+++--. ++|||++ |+|++ +|+| ++|++|.+. ++. .++.+ ++....... ..+.+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------~~~v~q~~~--lf~-~ti~~~ni~~~~~~~-~~~~~~ 187 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------LSFANHKSH--FWL-ASLADTRAALVDDAT-HACWRY 187 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------ECGGGTTSG--GGG-GGGTTCSCEEEEEEC-HHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------EEEecCccc--ccc-ccHHHHhhccCcccc-HHHHHH
Confidence 356788889984443 5999999 99998 8888 356777653 333 24443 332211112 245556
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhh
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRET 159 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~ 159 (211)
++.+ +...++ ...|||||||| |||++.+|++|| |++||+.+...+.. +||++..+ ..
T Consensus 188 i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~ 244 (305)
T 2v9p_A 188 FDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RF 244 (305)
T ss_dssp HHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-EC
T ss_pred HHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-Hh
Confidence 6664 443332 57899999999 999999999999 99999998887752 28998875 57
Q ss_pred CCeEEEEeCCceeeecCChHHH
Q psy2681 160 DCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 160 ~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
+|++ +|++|+++ ..|+..++
T Consensus 245 aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 245 EQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp CCCC-CCC---CC-CCCCHHHH
T ss_pred CCEE-EEeCCEEE-EeCCHHHH
Confidence 8999 99999986 47888777
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-15 Score=117.54 Aligned_cols=156 Identities=13% Similarity=0.123 Sum_probs=101.0
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEec---------CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS---------PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~---------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~ 74 (211)
|.++.++ |-+ ++|||++ ++|.++ ++| +... .+.++||++|+.. ... .++...
T Consensus 1 G~~i~i~-G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~----g~~---~~l~~~------ 64 (189)
T 2i3b_A 1 ARHVFLT-GPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS----GTR---GPLSRV------ 64 (189)
T ss_dssp CCCEEEE-SCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT----SCE---EEEEEC------
T ss_pred CCEEEEE-CCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc----cce---ehhhcc------
Confidence 3467777 654 5999999 999998 888 6432 2457899988642 111 111100
Q ss_pred HHHHHHHhCCCCC-----ccccCCCCCCChHHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcC
Q psy2681 75 KSRRQLGMFGLPS-----YAHTIPIRDLSGGQKARV-ALAE---LTLNNPDILILDE--PTNNLDIESIDALAEAIKNYQ 143 (211)
Q Consensus 75 ~~~~~l~~~gl~~-----~~~~~~~~~LSgG~kqRv-~iar---al~~~p~lllLDE--Pt~gLD~~~~~~l~~~l~~~~ 143 (211)
.++.++ ... ++...+|+|||+++ ++++ |++.+|+++|+|| |++.+|+...+.+.+++....
T Consensus 65 -------~~~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~ 136 (189)
T 2i3b_A 65 -------GLEPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG 136 (189)
T ss_dssp -------CCCCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS
T ss_pred -------cccCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC
Confidence 011111 112 24557999999988 4444 5899999999999 999999999999999998765
Q ss_pred CeEE---EEecCh--HHHHhhCCeEEEEeCCceeeec-CChHHHHHHHHHHhh
Q psy2681 144 GGVI---LVSHDE--RLIRETDCELWALEKKNIRKFN-GDFDDYREKLLTSLG 190 (211)
Q Consensus 144 ~tii---ivsHd~--~~~~~~~~~v~~l~~g~i~~~~-g~~~~~~~~~~~~~~ 190 (211)
.+|+ .|||+. .++.+++ .+.+|+++... .+.+...+++++.+.
T Consensus 137 ~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~~~~nr~~~~~~i~~~~~ 185 (189)
T 2i3b_A 137 TIILGTIPVPKGKPLALVEEIR----NRKDVKVFNVTKENRNHLLPDIVTCVQ 185 (189)
T ss_dssp CCEEEECCCCCSSCCTTHHHHH----TTCCSEEEECCSSSGGGHHHHHHHHHT
T ss_pred cEEEEEeecCCCCchHHHHHHe----ecCCcEEEEeChHhHHHHHHHHHHHHH
Confidence 4453 455987 5555443 34566665543 466666666655543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-14 Score=125.44 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=108.1
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC-------------------eEEEEEeCCCCCCCCCCCC
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR-------------------LRIGKFDQHSGEHLFPDDT 60 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~-------------------~~ig~v~q~~~~~l~~~~t 60 (211)
+.+..|.++.++++-. ++|||++ |+|+..|+.|.+...+. +.++|++|... .+++.++
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~-~~~~~~~ 230 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV-SPLLRMQ 230 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS-CHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC-CHHHHHH
Confidence 3567889999997775 5999999 99999999998875432 35899999642 2344556
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhCC--CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 61 PCEYLMKLFNLPYEKSRRQLGMFG--LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 61 ~~e~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
+.+++.... +++...+ .....+ .+..||+|| ||++|| +.+|++ |+|||+.+...+.++
T Consensus 231 v~~~~~~~a--------e~~~~~~~~v~~~ld--~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~l 290 (438)
T 2dpy_A 231 GAAYATRIA--------EDFRDRGQHVLLIMD--SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPAL 290 (438)
T ss_dssp HHHHHHHHH--------HHHHTTTCEEEEEEE--CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHH
T ss_pred HHHHHHHHH--------HHHHhCCCCHHHHHH--hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHH
Confidence 666553210 1111111 111122 367899999 999999 888988 999999999999999
Q ss_pred HHhcC------C------eEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 139 IKNYQ------G------GVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 139 l~~~~------~------tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
+.+.. + ||+++|||++ ..+||+++++.+|+++
T Consensus 291 l~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 291 VERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV 334 (438)
T ss_dssp HTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE
T ss_pred HHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE
Confidence 97652 2 8999999998 5678888888888775
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-13 Score=132.66 Aligned_cols=132 Identities=10% Similarity=0.097 Sum_probs=89.0
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEE-EEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCC
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 84 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig-~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~g 84 (211)
++-+|.|-+ ++|||+| + |++.+. .++| ||||++. .+++.+++ +.++|
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aqiG~~Vpq~~~-----~l~v~d~I--------------~~rig 840 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQMGCYVPAEVC-----RLTPIDRV--------------FTRLG 840 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHH---------HTTTCCEESSEE-----EECCCSBE--------------EEECC
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHH---------hheeEEeccCcC-----CCCHHHHH--------------HHHcC
Confidence 445555776 5999999 8 998762 2345 8888642 12222221 22345
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH-HHHHHHHHh---c-CCeEEEEecChHHHHhh
Q psy2681 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI-DALAEAIKN---Y-QGGVILVSHDERLIRET 159 (211)
Q Consensus 85 l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~-~~l~~~l~~---~-~~tiiivsHd~~~~~~~ 159 (211)
+.+.... ..+.+|++|++ +++|++++.+|+++||||||+|+|+... ..++.++.. . +.++|++||+.+++..+
T Consensus 841 ~~d~~~~-~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~ 918 (1022)
T 2o8b_B 841 ASDRIMS-GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDY 918 (1022)
T ss_dssp ----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHT
T ss_pred CHHHHhh-chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHh
Confidence 5444332 45678888876 9999999999999999999999999874 334555443 3 67999999999999999
Q ss_pred CCeEEEEeCCcee
Q psy2681 160 DCELWALEKKNIR 172 (211)
Q Consensus 160 ~~~v~~l~~g~i~ 172 (211)
++++.++ +|++.
T Consensus 919 ~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 919 SQNVAVR-LGHMA 930 (1022)
T ss_dssp SSCSSEE-EEEEE
T ss_pred CCcceee-cCeEE
Confidence 9888765 45553
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-13 Score=127.78 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=85.2
Q ss_pred cCeeeeecCCC--Ccccccc-ccCccc-CCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHh
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELT-PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 82 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~-p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~ 82 (211)
+..+.++ |-+ ++|||+| ++|+.. +..|.+....+..+++++| ++...++.+++
T Consensus 576 g~i~~I~-GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-----i~~~~~~~d~l----------------- 632 (765)
T 1ewq_A 576 HELVLIT-GPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-----IYTRIGASDDL----------------- 632 (765)
T ss_dssp SCEEEEE-SCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE-----EEEECCC---------------------
T ss_pred CcEEEEE-CCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH-----hhccCCHHHHH-----------------
Confidence 3444444 665 5999999 999874 6788764333345666554 23333332221
Q ss_pred CCCCCccccCCCCCCChHHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHH-HHHHHHHHhcCCeEEEEecChHHH
Q psy2681 83 FGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEP---TNNLDIESI-DALAEAIKNYQGGVILVSHDERLI 156 (211)
Q Consensus 83 ~gl~~~~~~~~~~~LSgG~kqRv~iaral--~~~p~lllLDEP---t~gLD~~~~-~~l~~~l~~~~~tiiivsHd~~~~ 156 (211)
...+|+||++++.+++++ +.+|+++||||| |++||+.+. ..+.+.|.+.+.++|++||+.++.
T Consensus 633 -----------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 633 -----------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT 701 (765)
T ss_dssp -------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred -----------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 124799999999999999 999999999999 999999886 578888888778999999999886
Q ss_pred H
Q psy2681 157 R 157 (211)
Q Consensus 157 ~ 157 (211)
.
T Consensus 702 ~ 702 (765)
T 1ewq_A 702 A 702 (765)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.3e-16 Score=124.96 Aligned_cols=152 Identities=10% Similarity=0.085 Sum_probs=96.5
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCH-HHHH--
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTP-CEYL-- 65 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~-~e~~-- 65 (211)
+.+..|..+.+++--. ++|||++ |+|++ | |++.... +..++|+||++. +++.++. .+++
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~ 92 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKT--IFEDKLKNEDFLEY 92 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHH--HHHHHHHTTCEEEE
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHH--HHHHhhhccchhhh
Confidence 3466777888884333 5999999 99988 6 8886511 234677777653 2221110 0000
Q ss_pred ----HhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHH-----HHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 66 ----MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL-----AELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 66 ----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~i-----aral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...++.+...+.++++...+. .. ..+|||||+||++| +++++.+|++++|||||+++|..+...+.
T Consensus 93 ~~~~~~~~g~~~~~i~~~l~~~~~~-il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~ 167 (218)
T 1z6g_A 93 DNYANNFYGTLKSEYDKAKEQNKIC-LF----EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ 167 (218)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEE-EE----EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred hhcccccCCCcHHHHHHHHhCCCcE-EE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence 011222345566777764431 11 14799999999999 89999999999999999999998877777
Q ss_pred HHHHhc----------CCeEEEEecChHHHHhhCCeE
Q psy2681 137 EAIKNY----------QGGVILVSHDERLIRETDCEL 163 (211)
Q Consensus 137 ~~l~~~----------~~tiiivsHd~~~~~~~~~~v 163 (211)
+.+.+. ..+.|+++||++.+....+++
T Consensus 168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 168 KRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 766532 235666667766665555444
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-15 Score=116.89 Aligned_cols=138 Identities=9% Similarity=0.026 Sum_probs=104.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcC----CCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSR 77 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~----~~~~~~~ 77 (211)
...+..+.++++.. ++|||++ ++|.+.| .++|++|++...-...+++.++....++ ...+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 34566788887775 5999999 9998876 4789999864111245677666532221 2345677
Q ss_pred HHHHhCCCCCccccCCCCCCChHHH----HHHHHHHHHhcCCCeEEEeCCCCC-------CCHHHHHHHHHHHHhc----
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQK----ARVALAELTLNNPDILILDEPTNN-------LDIESIDALAEAIKNY---- 142 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~k----qRv~iaral~~~p~lllLDEPt~g-------LD~~~~~~l~~~l~~~---- 142 (211)
+.++.+++.+.... ++.++|+|++ ||++++++++.+|.++++||||++ ||+.....+.+.+.+.
T Consensus 72 ~~l~~~~~~~~~~~-~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLPVEM-PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCCEEE-CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcCC-CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 78888888776665 7889999974 688999999999999999999999 9998888888877653
Q ss_pred CCeEEEEecCh
Q psy2681 143 QGGVILVSHDE 153 (211)
Q Consensus 143 ~~tiiivsHd~ 153 (211)
+.|++.++|+.
T Consensus 151 g~t~~~~~~~~ 161 (211)
T 3asz_A 151 GRSLEGVVAQY 161 (211)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67899999985
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.4e-13 Score=113.58 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=101.2
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC------------------eEEEEEeCCCCCCCCCCCCH
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR------------------LRIGKFDQHSGEHLFPDDTP 61 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~------------------~~ig~v~q~~~~~l~~~~t~ 61 (211)
+.+..|.++.++++-. ++|||++ |+|+..|+.|.+...+. ..+.+++|... ..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-------~~ 138 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-------PA 138 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-------CH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-------CH
Confidence 3467889999997775 5999999 99999999998764321 23555555321 11
Q ss_pred HHHHHhhcCCCHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 62 CEYLMKLFNLPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 62 ~e~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.+.+..... .....+++...+-.- ...+ .+..||+|| ||+++| +.+|++ |+|||+.....+.+++.
T Consensus 139 ~~r~~~~~~--~~~~ae~~~~~~~~vl~~ld-~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~lle 205 (347)
T 2obl_A 139 LERMKAAFT--ATTIAEYFRDQGKNVLLMMD-SVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLE 205 (347)
T ss_dssp HHHHHHHHH--HHHHHHHHHTTTCEEEEEEE-THHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHHHHHHhccccHHHHHh-hHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHH
Confidence 111110000 001111211111100 0012 578999999 899999 688887 99999999999999998
Q ss_pred hc-----CC-----eEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 141 NY-----QG-----GVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 141 ~~-----~~-----tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
+. +. ||+++|||++ ..+||+++++.+|+++.
T Consensus 206 r~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 206 RAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp TCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred HHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 65 23 7999999998 67899999999998863
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-11 Score=114.38 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=63.1
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHH--hcCCCeEEEeCCCCCCCHHHHHHH-HHH---HHh-cCCeEEEEec
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEPTNNLDIESIDAL-AEA---IKN-YQGGVILVSH 151 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral--~~~p~lllLDEPt~gLD~~~~~~l-~~~---l~~-~~~tiiivsH 151 (211)
++.++|+.+. ....+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ +.+ +.+ .+.++|++||
T Consensus 708 i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH 783 (934)
T 3thx_A 708 ILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATH 783 (934)
T ss_dssp EEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 3445555432 3456888888888888888 999999999999999999887666 333 333 3679999999
Q ss_pred ChHHHHhhCCeEEEEeCCcee
Q psy2681 152 DERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 152 d~~~~~~~~~~v~~l~~g~i~ 172 (211)
+.+.. .+++++..+.+|++.
T Consensus 784 ~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 784 FHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp CGGGG-GGGGTCTTEEEEEEE
T ss_pred cHHHH-HHhcccceeEeeEEE
Confidence 97665 688888777777663
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.3e-11 Score=113.27 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=55.2
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHHh----cCCeEEEEecChH
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIKN----YQGGVILVSHDER 154 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~----~~~tiiivsHd~~ 154 (211)
+..+|+.+.... ..+.+|+||+|++.|+++ +.+|+++||||||+|||+.....+. .++.. .+.|+|++|||.+
T Consensus 720 ~~~ig~~d~l~~-~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 720 FTRMGAADNIYK-GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp EEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHhCChHHHHHH-hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 344555444443 568899999999999999 8999999999999999999887775 44432 3679999999987
Q ss_pred HHH
Q psy2681 155 LIR 157 (211)
Q Consensus 155 ~~~ 157 (211)
.+.
T Consensus 798 l~~ 800 (918)
T 3thx_B 798 VCE 800 (918)
T ss_dssp GGG
T ss_pred HHH
Confidence 653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-11 Score=98.14 Aligned_cols=140 Identities=6% Similarity=-0.027 Sum_probs=85.1
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEec----CCeEEEEEeCCCCCCCCCCCCHHHHHHh-hcCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKS----PRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSR 77 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~----~~~~ig~v~q~~~~~l~~~~t~~e~~~~-~~~~~~~~~~ 77 (211)
.+..+.++ |-. ++|||++ +++.+. .|.+... ....+.|+..+.. . ..+...+.. ..........
T Consensus 29 ~G~i~~i~-G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~~~ 100 (279)
T 1nlf_A 29 AGTVGALV-SPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEERQ 100 (279)
T ss_dssp TTSEEEEE-ESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHHHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhhhh
Confidence 34455555 443 5999999 877554 3333111 1234666654321 0 011112221 1233445556
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHHH---HHHHHHHH----hcCCeEEE
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN--NLDIESI---DALAEAIK----NYQGGVIL 148 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~--gLD~~~~---~~l~~~l~----~~~~tiii 148 (211)
++++.+++...... ++..||+|++|++ ++++.+|+++++||||+ ++|.... ..+.+.|+ +.+.|||+
T Consensus 101 ~~~~~l~l~~~~~~-~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~ 176 (279)
T 1nlf_A 101 AVADGLLIQPLIGS-LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF 176 (279)
T ss_dssp HHHHHEEECCCTTS-CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred hccCceEEeecCCC-CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence 67788888766554 7899999997765 68888999999999999 9997443 55555554 44789999
Q ss_pred EecChHHHH
Q psy2681 149 VSHDERLIR 157 (211)
Q Consensus 149 vsHd~~~~~ 157 (211)
+||+.....
T Consensus 177 i~H~~~~~~ 185 (279)
T 1nlf_A 177 LHHASKGAA 185 (279)
T ss_dssp EEEC-----
T ss_pred EecCCCccc
Confidence 999987764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-13 Score=124.74 Aligned_cols=143 Identities=8% Similarity=-0.070 Sum_probs=88.6
Q ss_pred cccccCeeeeecCCC-Ccccccc-c--cCcccCCcceEEecCC----------eEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-P--KGELTPNKGELRKSPR----------LRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i--~G~~~p~~G~i~~~~~----------~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.+++--. ++|||++ + +|+.+|++|.+..... ..+||++|++.. ..+ +...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~--~~~------l~~~ 106 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVD--EGK------LFIL 106 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHH--TTS------EEEE
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhc--cCc------EEEE
Confidence 345677778884443 5999999 5 6999999998875431 124444443210 000 0000
Q ss_pred cCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh-cCCCeEEEeCCCC-----CCCHHHHHHHHHHHHhc
Q psy2681 69 FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-NNPDILILDEPTN-----NLDIESIDALAEAIKNY 142 (211)
Q Consensus 69 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~-~~p~lllLDEPt~-----gLD~~~~~~l~~~l~~~ 142 (211)
.... ..... .....+.-+. +.-.+..+|. .+|+++++||||+ +||+..+..+.++++.+
T Consensus 107 ~~~~-------------~~~~~-~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 107 DASP-------------DPEGQ-EVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp ECCC-------------CSSCC-SCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred ecCc-------------ccchh-hhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0000 00000 0112233332 3344455553 5799999999998 46999999998888654
Q ss_pred ---CCeEEEEecChHHH---------HhhCCeEEEEeC
Q psy2681 143 ---QGGVILVSHDERLI---------RETDCELWALEK 168 (211)
Q Consensus 143 ---~~tiiivsHd~~~~---------~~~~~~v~~l~~ 168 (211)
+.|||++||+++.+ ..+||++++|++
T Consensus 172 ~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 172 KQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 67999999999884 566999999988
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.3e-12 Score=103.60 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=78.1
Q ss_pred cccCeeeeecCCC--Ccccccc-ccCcccCC-cceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKGELTPN-KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~-~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
..+..+.++ |-. ++|||++ ++|.++|+ +|+|..... .++|++|... .+ ...
T Consensus 23 ~~g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~-~~------------v~q---------- 77 (261)
T 2eyu_A 23 RKMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKK-SI------------VNQ---------- 77 (261)
T ss_dssp CSSEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSS-SE------------EEE----------
T ss_pred CCCCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcc-ee------------eeH----------
Confidence 345556666 554 5999999 99999998 899875432 1334433221 00 000
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhC
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD 160 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~ 160 (211)
..+|++. ..| |++||++|..+|+++++|||| |+++...+.+.. ..+.+|+++||+.+. ...+
T Consensus 78 ~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~~-~~~~ 139 (261)
T 2eyu_A 78 REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNTA-IDTI 139 (261)
T ss_dssp EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSSH-HHHH
T ss_pred HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcchH-HHHH
Confidence 1333321 122 899999999999999999999 999877666654 347799999999873 4555
Q ss_pred CeEE
Q psy2681 161 CELW 164 (211)
Q Consensus 161 ~~v~ 164 (211)
++++
T Consensus 140 dri~ 143 (261)
T 2eyu_A 140 HRIV 143 (261)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-10 Score=94.95 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=57.7
Q ss_pred CCCCChHH-HHHHHHHHHHhcCCCeEEEeCCCC---C---CCH-HHHHHHHHHHHh----cCCeEEEEecCh--H-----
Q psy2681 94 IRDLSGGQ-KARVALAELTLNNPDILILDEPTN---N---LDI-ESIDALAEAIKN----YQGGVILVSHDE--R----- 154 (211)
Q Consensus 94 ~~~LSgG~-kqRv~iaral~~~p~lllLDEPt~---g---LD~-~~~~~l~~~l~~----~~~tiiivsHd~--~----- 154 (211)
+..+|.++ +||+. |+++..+|+++|+||||+ + +|. .....+.+.|++ .+.|||++||+. +
T Consensus 127 ~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~ 205 (296)
T 1cr0_A 127 FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAH 205 (296)
T ss_dssp CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC--------
T ss_pred CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccc
Confidence 46789998 67777 999999999999999999 5 455 555667766654 478999999995 4
Q ss_pred ---------------HHHhhCCeEEEEeCCce
Q psy2681 155 ---------------LIRETDCELWALEKKNI 171 (211)
Q Consensus 155 ---------------~~~~~~~~v~~l~~g~i 171 (211)
.+...||++++|.+|+.
T Consensus 206 ~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 206 EEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CCC---CHHHHCSEEEEEEEC--
T ss_pred ccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999988764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-10 Score=91.03 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=79.6
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHh
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 82 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~ 82 (211)
..+..+.+++--. ++|||++ ++|...+..|.... ...+-|+..+.. +.... ...+....+.... .+.+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~--~~~~i~~~~~~~---~~~~~-i~~~~~~~~~~~~---~~~~~ 93 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL--NGSVIWIDTENT---FRPER-IREIAQNRGLDPD---EVLKH 93 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC--SCEEEEEESSSC---CCHHH-HHHHHHHTTSCHH---HHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCC--CCEEEEEECCCC---CCHHH-HHHHHHHcCCCHH---HHhhc
Confidence 4456667773333 5999999 99966654432211 112334433221 11111 1112122222222 22222
Q ss_pred CCCCCccccCCCCCCChHHH-HHHHHHHHHhc-------CCCeEEEeCCCCCCCHH-------HH-----HHHHHHH---
Q psy2681 83 FGLPSYAHTIPIRDLSGGQK-ARVALAELTLN-------NPDILILDEPTNNLDIE-------SI-----DALAEAI--- 139 (211)
Q Consensus 83 ~gl~~~~~~~~~~~LSgG~k-qRv~iaral~~-------~p~lllLDEPt~gLD~~-------~~-----~~l~~~l--- 139 (211)
+. ....++.+++ +.+..+.+++. +|+++++||||+++|+. .. ..+.+.|
T Consensus 94 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~ 165 (231)
T 4a74_A 94 IY--------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRL 165 (231)
T ss_dssp EE--------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred EE--------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 11 1123455444 33666666665 99999999999999983 11 2344444
Q ss_pred -HhcCCeEEEEecCh----HHHHhhCCeEEEEeCCc
Q psy2681 140 -KNYQGGVILVSHDE----RLIRETDCELWALEKKN 170 (211)
Q Consensus 140 -~~~~~tiiivsHd~----~~~~~~~~~v~~l~~g~ 170 (211)
++.+.|||++||+. ..+...+++++++++|+
T Consensus 166 ~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 166 ANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 34478999999954 45889999999998764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-12 Score=107.63 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=87.0
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..+.++ |-. ++|||++ ++|.++|++|+|.... +..++|++|++. +++..++.+++.
T Consensus 102 g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 102 GRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 4567777 665 5999999 9999999999997532 124889999864 566667777664
Q ss_pred hhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 67 KLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 67 ~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~--lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
... +.. ..+++..|..+... ..++...+||++||||++.+|+ ++.|| |+++.+.. ..+..+-...
T Consensus 179 ~~~~~~~d----~~llDt~G~~~~~~----~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~ 247 (304)
T 1rj9_A 179 AMKARGYD----LLFVDTAGRLHTKH----NLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAV 247 (304)
T ss_dssp HHHHHTCS----EEEECCCCCCTTCH----HHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHH
T ss_pred HHHhCCCC----EEEecCCCCCCchH----HHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHc
Confidence 211 100 01233445433222 2344555899999999999999 66677 66665432 2333333445
Q ss_pred CCeEEEEecCh
Q psy2681 143 QGGVILVSHDE 153 (211)
Q Consensus 143 ~~tiiivsHd~ 153 (211)
+.|+|++||+.
T Consensus 248 ~~t~iivTh~d 258 (304)
T 1rj9_A 248 GLTGVIVTKLD 258 (304)
T ss_dssp CCSEEEEECTT
T ss_pred CCcEEEEECCc
Confidence 78999999984
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-11 Score=100.99 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=92.2
Q ss_pred ccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEe-cCCeEEEEEeCCCCCCCCCCCCHHHHHHhhc---CC------
Q psy2681 4 MCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRK-SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL------ 71 (211)
Q Consensus 4 ~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~-~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~---~~------ 71 (211)
+..+..+.++++.. ++|||++ ++|.+ |.+.. ..+..++|++|+. ++..+++.++..... ..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKALKGQYNFDHPDAF 94 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHHTTCCCTTSGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhhccCCCCCCcccc
Confidence 45567788887775 5999999 88765 32211 1234689999974 566788877654221 11
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEEEe
Q psy2681 72 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-YQGGVILVS 150 (211)
Q Consensus 72 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-~~~tiiivs 150 (211)
..+.+.+.++.+ ...... ++..||+||+||+.+ ++++.+|+++|+|||....+.. +.+ .+.+|+++|
T Consensus 95 ~~~~~~~~L~~l--~~~~~~-~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~~~~~i~v~t 162 (245)
T 2jeo_A 95 DNDLMHRTLKNI--VEGKTV-EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDMFHLRLFVDT 162 (245)
T ss_dssp CHHHHHHHHHHH--HTTCCE-EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTTCSEEEEEEC
T ss_pred cHHHHHHHHHHH--HCCCCe-ecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHhcCeEEEEEC
Confidence 123344555543 222333 678999999999988 6888999999999999888764 222 367999999
Q ss_pred cChHHH-HhhCC
Q psy2681 151 HDERLI-RETDC 161 (211)
Q Consensus 151 Hd~~~~-~~~~~ 161 (211)
|+...+ ..++.
T Consensus 163 h~~~~~~r~~~r 174 (245)
T 2jeo_A 163 DSDVRLSRRVLR 174 (245)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 974444 44443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.5e-13 Score=114.04 Aligned_cols=134 Identities=12% Similarity=0.033 Sum_probs=70.0
Q ss_pred eeeeecCCC--Ccccccc-ccCc-ccCCcceEEec--------CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCC-HHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGE-LTPNKGELRKS--------PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP-YEK 75 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~-~~p~~G~i~~~--------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~-~~~ 75 (211)
.+.++ |-. ++|||++ +.|. ..|++| +... ....+++++|... +...+++++......... .+.
T Consensus 20 ~I~lv-G~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~--~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 20 TLMVV-GESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG--VKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp EEEEE-EETTSSHHHHHHHHHC-------------------------CEEEEC-----CCEEEEEEEEC-----------
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC--cccCcchhhhhhhhhhcCcHHH
Confidence 45555 543 6999999 8997 888888 4211 1234678888653 344445444322110000 011
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCC-CCHHHHHHHHHHHHh-cCCeEEEEecCh
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN-LDIESIDALAEAIKN-YQGGVILVSHDE 153 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~g-LD~~~~~~l~~~l~~-~~~tiiivsHd~ 153 (211)
...+... +....+. ++.++|||||||+.+|||++ ++++||||++ ||+.... ++..+.. .+.++|+++||+
T Consensus 96 ~~~l~~~--l~~~~~~-~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~-~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 96 FKTIISY--IDEQFER-YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVA-FMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp CTTHHHH--HHHHHHH-HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHH-HHHHHTTTSCEEEEECCGGG
T ss_pred HHHHHHH--HHHHHHH-HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHH-HHHHHHhcCCEEEEEEeCCC
Confidence 1111111 1111222 57889999999999999986 9999999985 9998753 3333332 256899999997
Q ss_pred H
Q psy2681 154 R 154 (211)
Q Consensus 154 ~ 154 (211)
.
T Consensus 168 ~ 168 (301)
T 2qnr_A 168 L 168 (301)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=86.49 Aligned_cols=74 Identities=7% Similarity=0.021 Sum_probs=60.4
Q ss_pred CCChHHHHHHHHHHHHhcCCC--eEEEeCCCCCC--CHHHHHHHHHHHHh----cCCeEEEEecCh--------HHHHhh
Q psy2681 96 DLSGGQKARVALAELTLNNPD--ILILDEPTNNL--DIESIDALAEAIKN----YQGGVILVSHDE--------RLIRET 159 (211)
Q Consensus 96 ~LSgG~kqRv~iaral~~~p~--lllLDEPt~gL--D~~~~~~l~~~l~~----~~~tiiivsHd~--------~~~~~~ 159 (211)
..|.++.++...+.+...+|+ ++++||||+++ |+.....+.+.|++ .+.|||++||+. ..+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 459999998888888888999 99999999888 99888887777754 367999999999 458889
Q ss_pred CCeEEEEeCC
Q psy2681 160 DCELWALEKK 169 (211)
Q Consensus 160 ~~~v~~l~~g 169 (211)
||++++|...
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-11 Score=109.00 Aligned_cols=137 Identities=19% Similarity=0.279 Sum_probs=81.3
Q ss_pred eeeecCCC-Ccccccc-ccCcccC-CcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCC
Q psy2681 10 IAVLQGLR-NPLSFIK-PKGELTP-NKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 72 (211)
Q Consensus 10 ~~~i~~~~-~~sTLl~-i~G~~~p-~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~ 72 (211)
+.+++.-. ++|||++ |+|+..| ++|.|+..+ +..+||++|++. +++..++.+++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i~~~---- 121 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEINKA---- 121 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CC--CCCHHHHHTTHHHH----
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeeccccc--CCCHHHHHHHHHHH----
Confidence 66663333 5999999 9999988 799885321 346899999864 66767776665321
Q ss_pred HHHHHHHHHh--CCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCC------CCCCCHHHHHHHHHHHHhc--
Q psy2681 73 YEKSRRQLGM--FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP------TNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 73 ~~~~~~~l~~--~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEP------t~gLD~~~~~~l~~~l~~~-- 142 (211)
...+.. .++.. +++.++.+....|+++|+||| |+|||+..+..+.+++.++
T Consensus 122 ----~~~~~~~~~~~s~---------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~ 182 (608)
T 3szr_A 122 ----QNAIAGEGMGISH---------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ 182 (608)
T ss_dssp ----HHHHHCSSSCCCS---------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT
T ss_pred ----HHHhcCCccccch---------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh
Confidence 111111 11111 112223334568999999999 9999999999999999875
Q ss_pred ---CCeEEEEecChHH--------HHhh----CCeEEEEeCCce
Q psy2681 143 ---QGGVILVSHDERL--------IRET----DCELWALEKKNI 171 (211)
Q Consensus 143 ---~~tiiivsHd~~~--------~~~~----~~~v~~l~~g~i 171 (211)
+.+++++|||.+. +..+ ...++++.++-+
T Consensus 183 ~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 183 RQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp SSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred cCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 3488999999753 3333 244567766544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-10 Score=98.69 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=47.1
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEe
Q psy2681 106 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 106 ~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~ 167 (211)
+||+||.++|++|++|||| |.++...+.+.. ..+.+||+++|+.+.+ ..++|++.|.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhc
Confidence 9999999999999999999 777766666654 3478999999999887 5667877663
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-10 Score=100.23 Aligned_cols=74 Identities=18% Similarity=0.074 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHh-------cCCCeEEEeCCCCCCCHHH------------HHHHHHHHH----hcCCeEEEEecChH
Q psy2681 98 SGGQKARVALAELTL-------NNPDILILDEPTNNLDIES------------IDALAEAIK----NYQGGVILVSHDER 154 (211)
Q Consensus 98 SgG~kqRv~iaral~-------~~p~lllLDEPt~gLD~~~------------~~~l~~~l~----~~~~tiiivsHd~~ 154 (211)
|.+++|++.++++++ .+|+++|+||||+++|+.. ...+...|. +.+.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 678999999999998 6899999999999999862 234444443 34789999999987
Q ss_pred HHHhhCCeEEEEeCCce
Q psy2681 155 LIRETDCELWALEKKNI 171 (211)
Q Consensus 155 ~~~~~~~~v~~l~~g~i 171 (211)
.....+........|++
T Consensus 288 ~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 288 RPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp --------------CCC
T ss_pred ccccccCCccccCCcce
Confidence 65443333444445544
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-11 Score=94.68 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCCCcc-ccCCCCCCChHHHHH-HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 75 KSRRQLGMFGLPSYA-HTIPIRDLSGGQKAR-VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~-~~~~~~~LSgG~kqR-v~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
.+.+++...++.... .+ ++..+|+||+|| +..+++++.+|+++++|||||++|..+...+++.|.+.
T Consensus 128 ~~~~~~~~~~~~~~~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHTTCCEEEEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 345567777876543 44 678899999999 89999999999999999999999999999999988764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-08 Score=79.40 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=56.1
Q ss_pred CCCChHH--HHHHHHHHHHhcC-CCeEEEeCCCCCCCHHH--------HHHHHHHH----HhcCCeEEEEecChH-----
Q psy2681 95 RDLSGGQ--KARVALAELTLNN-PDILILDEPTNNLDIES--------IDALAEAI----KNYQGGVILVSHDER----- 154 (211)
Q Consensus 95 ~~LSgG~--kqRv~iaral~~~-p~lllLDEPt~gLD~~~--------~~~l~~~l----~~~~~tiiivsHd~~----- 154 (211)
..+|+++ +++++.+++++.+ |+++++||||+.+|+.. ...+.+.| ++.+.|||+++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~ 162 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence 3455654 5688888899986 99999999999999732 12333333 345789999999865
Q ss_pred --------HHHhhCCeEEEEeCC
Q psy2681 155 --------LIRETDCELWALEKK 169 (211)
Q Consensus 155 --------~~~~~~~~v~~l~~g 169 (211)
.+...||.+++|...
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 677899999999754
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.9e-09 Score=98.61 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=50.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH----HHHHHHh-cCCeEEEEecChHHHHhhCCeEEEEeCC
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKN-YQGGVILVSHDERLIRETDCELWALEKK 169 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~----l~~~l~~-~~~tiiivsHd~~~~~~~~~~v~~l~~g 169 (211)
+.+|+||++. +.+...+.+|+++|||||++|+|+..... +.+.+.+ .+.++|++||+.+++ .+++++..+.++
T Consensus 668 stf~~e~~~~-~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~ 745 (800)
T 1wb9_A 668 STFMVEMTET-ANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANV 745 (800)
T ss_dssp --CHHHHHHH-HHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEE
T ss_pred hhhhHHHHHH-HHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEE
Confidence 4578887754 44455689999999999988888765444 3344444 367999999999765 466665444444
Q ss_pred c
Q psy2681 170 N 170 (211)
Q Consensus 170 ~ 170 (211)
.
T Consensus 746 ~ 746 (800)
T 1wb9_A 746 H 746 (800)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.3e-09 Score=93.49 Aligned_cols=131 Identities=8% Similarity=-0.033 Sum_probs=70.3
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcce--EEe--c---CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCC-HHHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGE--LRK--S---PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP-YEKSR 77 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~--i~~--~---~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~-~~~~~ 77 (211)
.|.++ |-. ++|||++ ++|...|..|. +.. . ....+++++|.+. ++..+++++++....... .....
T Consensus 33 ~I~lv-G~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~--~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 33 TLMVV-GESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG--VQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp EEEEE-CCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--------CEEEEEEECC-----------CH
T ss_pred EEEEE-CCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCC--cccceeeeechhhhhhccchhhHH
Confidence 35556 554 5999999 99998754441 110 0 1234778887654 444555544432111100 00011
Q ss_pred HHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCC---eEEEeCCC-CCCCHHHHHHHHHHHHhcCCeEEEEecCh
Q psy2681 78 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD---ILILDEPT-NNLDIESIDALAEAIKNYQGGVILVSHDE 153 (211)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~---lllLDEPt-~gLD~~~~~~l~~~l~~~~~tiiivsHd~ 153 (211)
.+.+. .. ..++.+++||++|||+++.+|+ ++++|||| ++||+.....+ +.|.. +.+||+|.|-.
T Consensus 110 ~i~~~------i~----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l-k~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 110 PVIDY------ID----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM-KRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp HHHHH------HH----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH-HHHTT-TSEEEEEEEST
T ss_pred HHHHH------HH----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH-HHHhc-cCcEEEEEEcc
Confidence 11111 11 1456778889999999999999 99999999 69999875433 44443 56777777754
Q ss_pred H
Q psy2681 154 R 154 (211)
Q Consensus 154 ~ 154 (211)
+
T Consensus 178 D 178 (418)
T 2qag_C 178 D 178 (418)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-10 Score=92.78 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=81.3
Q ss_pred CeeeeecCCC--Ccccccc-cc---CcccCCcceEEecC---C----eEEEEEeCCCCCCCCCCCCHHHHHHh-h-----
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PK---GELTPNKGELRKSP---R----LRIGKFDQHSGEHLFPDDTPCEYLMK-L----- 68 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~---G~~~p~~G~i~~~~---~----~~ig~v~q~~~~~l~~~~t~~e~~~~-~----- 68 (211)
..+.++ |.. ++|||++ ++ |...|+.|++.... . ..+++++|+.. +++..++.+++.. .
T Consensus 28 ~~i~l~-G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 28 LRAVIL-GPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSL--LVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTCTT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhcCC
Confidence 467777 664 5999999 99 99999999875431 1 12334455543 5566666666542 1
Q ss_pred -----cCC--CHHHHHHHHH--hCC------------CCCccccCCCCCCChHHHHHHHHHHHH-hcCCCeEEEe----C
Q psy2681 69 -----FNL--PYEKSRRQLG--MFG------------LPSYAHTIPIRDLSGGQKARVALAELT-LNNPDILILD----E 122 (211)
Q Consensus 69 -----~~~--~~~~~~~~l~--~~g------------l~~~~~~~~~~~LSgG~kqRv~iaral-~~~p~lllLD----E 122 (211)
.+. ....+..+.. .++ +..... +++..||| |+ +|+ +.+|++++|| |
T Consensus 105 ~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~-r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSR-RWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT-EEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHc-CCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 111 2222333322 222 222222 36788999 55 677 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q psy2681 123 PTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 123 Pt~gLD~~~~~~l~~~l~~~ 142 (211)
||++||+.+...+.+.+.++
T Consensus 177 P~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHH
Confidence 99999999999998888765
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.5e-09 Score=84.83 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=72.3
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccC--CcceEEecCC-------eEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTP--NKGELRKSPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p--~~G~i~~~~~-------~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
.|..|..+.++ |=. ++|||++ ++|..+| ..|.+....+ ..++|+||++. .|+.+++
T Consensus 12 ~~~~G~ii~l~-GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~--~f~~~~~--------- 79 (219)
T 1s96_A 12 HMAQGTLYIVS-APSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD--EFKEMIS--------- 79 (219)
T ss_dssp ---CCCEEEEE-CCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH--HHHHHHH---------
T ss_pred cCCCCcEEEEE-CCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH--HHHHHHh---------
Confidence 36677777777 554 5999999 9999986 5776654321 13455555431 1111111
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEe
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVS 150 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivs 150 (211)
.-.+.+... ....+.|--+++ +..++..++++||| ||+.+...+.+.+. .+.||+++|
T Consensus 80 -----------~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~t 137 (219)
T 1s96_A 80 -----------RDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILP 137 (219)
T ss_dssp -----------TTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEEC
T ss_pred -----------cCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEEC
Confidence 000000000 001111111222 45566678999999 99999999999887 367999999
Q ss_pred cChHHHHh
Q psy2681 151 HDERLIRE 158 (211)
Q Consensus 151 Hd~~~~~~ 158 (211)
|+++.+.+
T Consensus 138 h~~~~l~~ 145 (219)
T 1s96_A 138 PSKIELDR 145 (219)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 99998875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-08 Score=84.81 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=68.4
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCC-cceEEecCC-------eEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPN-KGELRKSPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 74 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~-~G~i~~~~~-------~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~ 74 (211)
.+..+.++ |-. ++|||++ ++|.+.|+ +|.|..... ..+++++|.
T Consensus 135 ~g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~------------------------ 189 (372)
T 2ewv_A 135 KMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR------------------------ 189 (372)
T ss_dssp SSEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE------------------------
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee------------------------
Confidence 34455666 554 5999999 99999987 788853210 011111110
Q ss_pred HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChH
Q psy2681 75 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 154 (211)
Q Consensus 75 ~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~ 154 (211)
.+|++ +..| +.+|+++|..+|+++++|||+ |++....+.+.. ..+.+|+.++|+.+
T Consensus 190 -------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 190 -------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT 245 (372)
T ss_dssp -------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS
T ss_pred -------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch
Confidence 12321 2344 469999999999999999999 777765544443 34678999999865
Q ss_pred HHHhhCCe
Q psy2681 155 LIRETDCE 162 (211)
Q Consensus 155 ~~~~~~~~ 162 (211)
+...++|
T Consensus 246 -~~~~~~r 252 (372)
T 2ewv_A 246 -AIDTIHR 252 (372)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3334344
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-07 Score=78.25 Aligned_cols=122 Identities=14% Similarity=0.093 Sum_probs=65.3
Q ss_pred eecCCC--Ccccccc-ccC-cccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHH
Q psy2681 12 VLQGLR--NPLSFIK-PKG-ELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 78 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G-~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~ 78 (211)
++.|-. ++||+++ ++| +..|+.|.+.... ...++++++.+...+.. .. . .......+++
T Consensus 40 ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~----~~~~~~~~~~ 111 (354)
T 1sxj_E 40 LLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP--SD--M----GNNDRIVIQE 111 (354)
T ss_dssp EEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECC--C----------CCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecH--hh--c----CCcchHHHHH
Confidence 445664 5999999 999 7788888875432 23456666653211111 10 0 0011112333
Q ss_pred HHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHH
Q psy2681 79 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERL 155 (211)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~ 155 (211)
.++.+.-...... .. .||| +..+|+++|+|||++ ||+.+...+.+.+.+. +.++|++||+...
T Consensus 112 ~i~~~~~~~~~~~-~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 112 LLKEVAQMEQVDF-QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred HHHHHHHhccccc-cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 3333211111111 11 4666 788999999999999 9999999999999886 3589999999643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-07 Score=79.63 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=68.3
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCccc-CCcceEEec--------CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELT-PNKGELRKS--------PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY 73 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~-p~~G~i~~~--------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~ 73 (211)
.+..+.++ |-. ++|||++ |+|... |..|+|... ....+++++|+.. +++..++.++. .++...
T Consensus 214 ~G~~~~lv-G~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~~--l~~l~~ 288 (358)
T 2rcn_A 214 TGRISIFA-GQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREFG--LWHLEP 288 (358)
T ss_dssp TTSEEEEE-CCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTCC--CCCCCH
T ss_pred CCCEEEEE-CCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHhh--hcCCCH
Confidence 35566666 665 5999999 999999 999998653 2346899998753 55555655531 233343
Q ss_pred HH----HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHH
Q psy2681 74 EK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 111 (211)
Q Consensus 74 ~~----~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral 111 (211)
+. +.++++.+|+..+.+. ++.+|| ||+||++||+++
T Consensus 289 ~e~~~~~~e~l~~~gl~~f~~~-~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 289 EQITQGFVEFHDYLGHCKYRDC-KHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHHHHTSGGGGGGTTCSSSTTC-CSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCchhcCC-CcccCC-HHHHHHHHHhcC
Confidence 33 3467888999877765 778999 999999999875
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-07 Score=83.83 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=45.8
Q ss_pred HHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH---HHHHhcCCeEEEEec
Q psy2681 80 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA---EAIKNYQGGVILVSH 151 (211)
Q Consensus 80 l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~---~~l~~~~~tiiivsH 151 (211)
+..++++ . .++.+||+|++|++.++++|+.+|.++++ |.+|+.....+. +.+.+.+.+++++|.
T Consensus 240 L~vvDls---~-~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 240 LYVLDAA---D-EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp EEEEETT---S-CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hEEeCCc---c-CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4445554 2 36788999999999999999999999999 999987653322 333333556666553
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-08 Score=79.20 Aligned_cols=135 Identities=10% Similarity=-0.037 Sum_probs=75.5
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCC---------eEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPR---------LRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~---------~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
=++..+..+.++ |.. ++|||++ ++|. |+.|.|..... ..++|++|... ...++.+++....
T Consensus 4 ~~i~~g~~i~l~-G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 4 TDDLGGNILLLS-GHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVA 76 (191)
T ss_dssp --CCTTEEEEEE-ECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEE-CCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHH
Confidence 366777778887 554 5999999 9997 77887765431 11233333210 1234444442110
Q ss_pred C-----CCHHHHHHHHHhCCCCCccc-cCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC
Q psy2681 70 N-----LPYEKSRRQLGMFGLPSYAH-TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143 (211)
Q Consensus 70 ~-----~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 143 (211)
. .....+..++..+++..... ..++..+|+|++|++.++|++..+|+++ +|+.....+.+.+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 77 GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 0 00000000011112211110 2245689999999999999999999876 68888888888776542
Q ss_pred --CeEEEEec
Q psy2681 144 --GGVILVSH 151 (211)
Q Consensus 144 --~tiiivsH 151 (211)
..+++.|+
T Consensus 149 ~~~~~~i~t~ 158 (191)
T 1zp6_A 149 AFEHHVLPVS 158 (191)
T ss_dssp GGGGGEEECT
T ss_pred cccccEEECC
Confidence 23444454
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.7e-08 Score=84.30 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=81.2
Q ss_pred cCeeeeecCCC-Ccccccc-ccCcccCCc----ceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 7 KLRIAVLQGLR-NPLSFIK-PKGELTPNK----GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 7 ~~~~~~i~~~~-~~sTLl~-i~G~~~p~~----G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
+.++.+++.-. ++|||++ |+|++.|++ |++...... ..... ....... ..+...............
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-----~~~~~--~~~~~~~-~~I~~~~q~~~~~~~t~~ 241 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-----GGDEQ--AMQYSDY-PQMALGHQRYIDYAVRHS 241 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-----SSCTT--SSCTTTH-HHHHHHHHHHHHHHHHHC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-----CCCcc--cCChhHH-HHHHHHHHHHHHHHHhcc
Confidence 77888884443 4999999 999999998 665432100 00000 0111122 222211100000000111
Q ss_pred HhCCC--CCccccCCCCCCChHHHHHHHHHHHHh-cCCCeEEEeC---CC------CCCCHHHHHHHHHHHHh----cCC
Q psy2681 81 GMFGL--PSYAHTIPIRDLSGGQKARVALAELTL-NNPDILILDE---PT------NNLDIESIDALAEAIKN----YQG 144 (211)
Q Consensus 81 ~~~gl--~~~~~~~~~~~LSgG~kqRv~iaral~-~~p~lllLDE---Pt------~gLD~~~~~~l~~~l~~----~~~ 144 (211)
+.+-+ .+.... .+..+|+|++|+..+++++. .+|+++|||| |+ .++|+..+..+.+.|.+ .+.
T Consensus 242 ~nl~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~ 320 (365)
T 1lw7_A 242 HKIAFIDTDFITT-QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKV 320 (365)
T ss_dssp SSEEEESSCHHHH-HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGC
T ss_pred CCEEEEeCCchHH-HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCC
Confidence 11101 111111 23456778888888888775 6999999999 65 58999999999888843 367
Q ss_pred eEEEEecChHHHHhhCCeEEEE
Q psy2681 145 GVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 145 tiiivsHd~~~~~~~~~~v~~l 166 (211)
+|++++|. ....++++++.++
T Consensus 321 ~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 321 PYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp CCEEEECS-SHHHHHHHHHHHH
T ss_pred CEEEeCCC-CHHHHHHHHHHHH
Confidence 99999985 3445555554433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.8e-09 Score=93.21 Aligned_cols=149 Identities=13% Similarity=0.213 Sum_probs=97.2
Q ss_pred cccCeeeeecCCC--Ccccccc-ccC------------cccCCcceEEecC------------CeEE---EEEeCCCCCC
Q psy2681 5 CLKLRIAVLQGLR--NPLSFIK-PKG------------ELTPNKGELRKSP------------RLRI---GKFDQHSGEH 54 (211)
Q Consensus 5 ~~~~~~~~i~~~~--~~sTLl~-i~G------------~~~p~~G~i~~~~------------~~~i---g~v~q~~~~~ 54 (211)
..+.++.++ |.. ++|||++ ++| .+.|+.|.+.... .+.+ .++.+.+.
T Consensus 18 ~~g~~vgiV-G~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG-- 94 (392)
T 1ni3_A 18 GNNLKTGIV-GMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG-- 94 (392)
T ss_dssp SSCCEEEEE-ECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG--
T ss_pred cCCCEEEEE-CCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc--
Confidence 446788888 664 5999999 988 6678999987643 2222 35666654
Q ss_pred CCCCCCHH-----HHHHhhcCCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCC--CeEEEeCCCCCC
Q psy2681 55 LFPDDTPC-----EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNL 127 (211)
Q Consensus 55 l~~~~t~~-----e~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p--~lllLDEPt~gL 127 (211)
++...+.. .++...... ..++..++..+ + ..+..+|++. +| ++.++|||++++
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~-----d~il~Vvd~~~--d-~~i~~v~~~~------------dP~~di~ildeel~~~ 154 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAV-----DAIYQVVRAFD--D-AEIIHVEGDV------------DPIRDLSIIVDELLIK 154 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTC-----SEEEEEEECCC--T-TCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHH-----HHHHHHHhccc--c-ceeeeecccc------------CcchhhhhchhhhHHH
Confidence 34433321 122111111 11122222221 1 2455677764 89 999999999999
Q ss_pred CHHHHHHHHHHHHhc----CCeEEEEecChHHHHhhCCeEE-EEeCC-ceeeecCChH
Q psy2681 128 DIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELW-ALEKK-NIRKFNGDFD 179 (211)
Q Consensus 128 D~~~~~~l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~-~l~~g-~i~~~~g~~~ 179 (211)
|+......++.+... +.|++ +|+...+..+|+++. +|.+| +.+. .++..
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~-~~~~~ 209 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIR-KGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGG-GSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceee-cCCCC
Confidence 999999988888765 33543 999999999999998 88999 7754 35543
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.91 E-value=8.7e-08 Score=80.47 Aligned_cols=114 Identities=12% Similarity=-0.093 Sum_probs=68.8
Q ss_pred CeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh---------cC----CC
Q psy2681 8 LRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---------FN----LP 72 (211)
Q Consensus 8 ~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---------~~----~~ 72 (211)
..|.+.+.-. ++|||.+ +.+.+.+.+.. ...+.+++|+.. ++ ..+..+++... .+ ..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~g~~-----~~~~~iv~~D~f--~~-~~~~~~~l~~~~~~~~l~~~~g~p~a~d 103 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGG-----EKSIGYASIDDF--YL-THEDQLKLNEQFKNNKLLQGRGLPGTHD 103 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGG-----GSCEEEEEGGGG--BC-CHHHHHHHHHHTTTCGGGSSSCSTTSBC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCC-----CceEEEeccccc--cC-ChHHHHHHhccccccchhhhccCcchhH
Confidence 3456664443 5999999 98888764211 223455588863 33 33445554321 01 12
Q ss_pred HHHHHHHHHhCCCC------C--ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q psy2681 73 YEKSRRQLGMFGLP------S--YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 130 (211)
Q Consensus 73 ~~~~~~~l~~~gl~------~--~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~ 130 (211)
.....+.++.+.-. . ... ..-..+||||+||+.+|++...+|+|+|+||||+++|+.
T Consensus 104 ~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 104 MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 34455566655322 1 111 133689999999999873333399999999999999985
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.8e-05 Score=61.31 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=42.9
Q ss_pred CCChHHHHH-HHHHHHHh--cCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHH----hcCCeEEEEecChHHH
Q psy2681 96 DLSGGQKAR-VALAELTL--NNPDILILDEPTNNLDIE-------S-----IDALAEAIK----NYQGGVILVSHDERLI 156 (211)
Q Consensus 96 ~LSgG~kqR-v~iaral~--~~p~lllLDEPt~gLD~~-------~-----~~~l~~~l~----~~~~tiiivsHd~~~~ 156 (211)
.++..+... +.-+..++ .+|+++++|||++.+|+. + ...+...|. +.+.|||+++|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 355555433 23233333 589999999999999985 3 223333333 3478999999976654
Q ss_pred Hh-------------------hCCeEEEEeCC
Q psy2681 157 RE-------------------TDCELWALEKK 169 (211)
Q Consensus 157 ~~-------------------~~~~v~~l~~g 169 (211)
.. +||.+++|..+
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------------------CCTTCEEEEEEEC
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 33 78999988765
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.6e-07 Score=76.81 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=90.4
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
+..+.++ |.. ++||+++ ++|.++|++|+|.... +..+.+++|... +++..++.+++.
T Consensus 129 g~vi~lv-G~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e~l~ 205 (328)
T 3e70_C 129 PYVIMFV-GFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYDAIQ 205 (328)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHHHHH
Confidence 4566666 665 5999999 9999999999996431 113558888754 566677777764
Q ss_pred hhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCC
Q psy2681 67 KLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 144 (211)
Q Consensus 67 ~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~ 144 (211)
... +.+ .-+++..|....... .+.+| -.+++++..++.+++||.++. .|.. ..+..+-...+.
T Consensus 206 ~~~~~~~d----~vliDtaG~~~~~~~-l~~eL-------~~i~ral~~de~llvLDa~t~-~~~~--~~~~~~~~~~~i 270 (328)
T 3e70_C 206 HAKARGID----VVLIDTAGRSETNRN-LMDEM-------KKIARVTKPNLVIFVGDALAG-NAIV--EQARQFNEAVKI 270 (328)
T ss_dssp HHHHHTCS----EEEEEECCSCCTTTC-HHHHH-------HHHHHHHCCSEEEEEEEGGGT-THHH--HHHHHHHHHSCC
T ss_pred HHHhccch----hhHHhhccchhHHHH-HHHHH-------HHHHHHhcCCCCEEEEecHHH-HHHH--HHHHHHHHhcCC
Confidence 221 000 001233343322111 22333 348999999999999996554 3332 233333335578
Q ss_pred eEEEEecCh---------HHHHhhCCeEEEEeCCcee
Q psy2681 145 GVILVSHDE---------RLIRETDCELWALEKKNIR 172 (211)
Q Consensus 145 tiiivsHd~---------~~~~~~~~~v~~l~~g~i~ 172 (211)
|+|++||.- ..+......+..+-.|..+
T Consensus 271 t~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 271 DGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 999999953 3444555677888888654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=6.5e-05 Score=57.61 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=37.0
Q ss_pred HhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc---CCeEEEEecChH
Q psy2681 111 TLNNPDILILDEPTN-NLDIESIDALAEAIKNY---QGGVILVSHDER 154 (211)
Q Consensus 111 l~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~---~~tiiivsHd~~ 154 (211)
.+.+|++|++|||++ ++|+..+..+.+++... +.++|++||...
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 345999999999995 99999999999888654 579999999763
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.71 E-value=2e-05 Score=67.90 Aligned_cols=135 Identities=16% Similarity=0.081 Sum_probs=84.6
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCC---------eEEEEEe-CCCCCCCCCCCCHHHHHHhhcCCC
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPR---------LRIGKFD-QHSGEHLFPDDTPCEYLMKLFNLP 72 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~---------~~ig~v~-q~~~~~l~~~~t~~e~~~~~~~~~ 72 (211)
..|..+.+++.-. ++|||++ ++|.++|++|.|..... ..++|++ |++.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~-------------------- 232 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAK-------------------- 232 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------------------------
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccc--------------------
Confidence 4566777775554 5999999 99999999999976531 1233333 2110
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEE
Q psy2681 73 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 149 (211)
Q Consensus 73 ~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiiv 149 (211)
..++++..++..|+.++..+|+.+++|||... ...+++..+ ..|++.+
T Consensus 233 ----------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~-------~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 233 ----------------------EEENAPVTAATLLRSCLRMKPTRILLAELRGG-------EAYDFINVAASGHGGSITS 283 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCST-------HHHHHHHHHHTTCCSCEEE
T ss_pred ----------------------cccccccCHHHHHHHHHhcCCCEEEEcCchHH-------HHHHHHHHHhcCCCeEEEE
Confidence 01234456788999999999999999999962 233444433 3478999
Q ss_pred ecChHHHHhhCCeEEEEeCCceeeecCChHHHHHHHHHHh
Q psy2681 150 SHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 189 (211)
Q Consensus 150 sHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~~~~~~~ 189 (211)
+|... +...++|+..+..+......-++......+.+.+
T Consensus 284 ~H~~~-~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~~~~ 322 (361)
T 2gza_A 284 CHAGS-CELTFERLALMVLQNRQGRQLPYEIIRRLLYLVV 322 (361)
T ss_dssp EECSS-HHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHC
T ss_pred ECCCC-HHHHHHHHHHHHhccccccCCCHHHHHHHHHHHc
Confidence 99976 6677789887776642111234444444443443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=9.9e-06 Score=71.39 Aligned_cols=141 Identities=9% Similarity=-0.016 Sum_probs=81.2
Q ss_pred ccccCe--eeeecCCC--Ccccccc-ccCcccCCcc-eEEe-c---CCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCC-
Q psy2681 4 MCLKLR--IAVLQGLR--NPLSFIK-PKGELTPNKG-ELRK-S---PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP- 72 (211)
Q Consensus 4 ~~~~~~--~~~i~~~~--~~sTLl~-i~G~~~p~~G-~i~~-~---~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~- 72 (211)
+..|.. +.++ |-. ++|||++ |+|... .| .+.. . .+..++|++|++. +++.+|+.+++.......
T Consensus 37 i~~Gei~~vaLv-G~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~~ltv~D~~~~g~~~~~ 111 (427)
T 2qag_B 37 VSQGFCFNILCV-GETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN--VRLKLTIVSTVGFGDQINK 111 (427)
T ss_dssp CC-CCEEEEEEE-CSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC----CEEEEEEEEEECCCC-CCH
T ss_pred ecCCCeeEEEEE-CCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc--cccccchhhhhhhhhcccc
Confidence 445667 8888 554 5999999 999842 22 1111 1 1236899999864 444555554432111111
Q ss_pred -----------HHHHHHHHHhC-CCCC----ccccCCC-----------CCCChHHHHHHHHHHHHhcCCCeEEEeCCCC
Q psy2681 73 -----------YEKSRRQLGMF-GLPS----YAHTIPI-----------RDLSGGQKARVALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 73 -----------~~~~~~~l~~~-gl~~----~~~~~~~-----------~~LSgG~kqRv~iaral~~~p~lllLDEPt~ 125 (211)
...+.+++... ++.. ..+. ++ ..|+... +.|+++|..+++++++|+|+.
T Consensus 112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~-rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD 187 (427)
T 2qag_B 112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDS-RIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKAD 187 (427)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC---CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGG
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccc-cccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchh
Confidence 12334455544 4431 1111 11 2455554 799999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh-c---CCeEEEEecCh
Q psy2681 126 NLDIESIDALAEAIKN-Y---QGGVILVSHDE 153 (211)
Q Consensus 126 gLD~~~~~~l~~~l~~-~---~~tiiivsHd~ 153 (211)
.|.+.....+.+.+++ + +.+|+.+|.|-
T Consensus 188 ~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 188 AISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred ccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 9999888888877765 3 56888888653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.37 E-value=5.5e-06 Score=74.26 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=88.8
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC-----------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~-----------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..+.++ |.+ ++|||++ |+|++++++|+|.... +..++|++|+.. +++..++.+++
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p~~tV~e~l 368 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSASVIFDAI 368 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCHHHHHHHHH
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCHHHHHHHHH
Confidence 45567777 765 5999999 9999999999997531 124789998754 45566677766
Q ss_pred Hhhc--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHh-cCC-CeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 66 MKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-NNP-DILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 66 ~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~-~~p-~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.... +.+ .-+++..|...... .|-.-.+|++.+++++. ..| +++|...|++|.|... .+..+-..
T Consensus 369 ~~a~~~~~D----vVLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--~ak~f~~~ 437 (503)
T 2yhs_A 369 QAAKARNID----VLIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--QAKLFHEA 437 (503)
T ss_dssp HHHHHTTCS----EEEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--HHHHHHHH
T ss_pred HHHHhcCCC----EEEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--HHHHHHhh
Confidence 4321 100 00123333321111 12223357888888764 446 4555555999865542 23333334
Q ss_pred cCCeEEEEecChH---------HHHhhCCeEEEEeCCce
Q psy2681 142 YQGGVILVSHDER---------LIRETDCELWALEKKNI 171 (211)
Q Consensus 142 ~~~tiiivsHd~~---------~~~~~~~~v~~l~~g~i 171 (211)
.+.|.+++||--. .+......|..+-.|..
T Consensus 438 ~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~ 476 (503)
T 2yhs_A 438 VGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGER 476 (503)
T ss_dssp TCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred cCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCC
Confidence 5789999999322 33344456666666643
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.36 E-value=4.7e-06 Score=70.10 Aligned_cols=100 Identities=7% Similarity=-0.116 Sum_probs=66.4
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEe---cC----C-------eEEEEEeCCCCCC---CCCCCCHHHHH
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK---SP----R-------LRIGKFDQHSGEH---LFPDDTPCEYL 65 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~---~~----~-------~~ig~v~q~~~~~---l~~~~t~~e~~ 65 (211)
.+....++ |-. ++|||+| ++ ...|+.|+|.. .+ + ..+||++|.|... +++.+|+ +++
T Consensus 164 ~G~i~~l~-G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 164 EGFICILA-GPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTCEEEEE-CSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred cCcEEEEE-CCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 44555555 775 4999999 99 99999999975 22 0 1369999998521 2246676 554
Q ss_pred H--h---------hcC-----CCHHHHHHHHHhCCCCC-ccccCCCCCCChHHHHHHHHHH
Q psy2681 66 M--K---------LFN-----LPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAE 109 (211)
Q Consensus 66 ~--~---------~~~-----~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgG~kqRv~iar 109 (211)
. . +.+ .....+.++++.++|+. ..+ ++++.|||..++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~-~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYK-SYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHH-HHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 1 1 111 12345789999999986 444 478899998888899886
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.34 E-value=5.4e-07 Score=69.99 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecC-hHHHHhhCCeEEEEe
Q psy2681 98 SGGQKARVALAE------LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD-ERLIRETDCELWALE 167 (211)
Q Consensus 98 SgG~kqRv~iar------al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd-~~~~~~~~~~v~~l~ 167 (211)
|+||+|++.++. +++.+|+...+|+ +||+..... ++.+..+ +.++|.+||. ++.++++|++++ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 888888888888 8999999888883 899988887 7777655 3589999999 999999999987 8
Q ss_pred CCceeeecCChHHH
Q psy2681 168 KKNIRKFNGDFDDY 181 (211)
Q Consensus 168 ~g~i~~~~g~~~~~ 181 (211)
+|+++ +.|+.+.+
T Consensus 170 ~g~~~-~~~~~~~~ 182 (189)
T 2bdt_A 170 NPRFI-FCMAGDPL 182 (189)
T ss_dssp CGGGS-CC------
T ss_pred CCcEE-EeecCCch
Confidence 88886 45665543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00043 Score=57.92 Aligned_cols=131 Identities=9% Similarity=0.044 Sum_probs=79.8
Q ss_pred cCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhC
Q psy2681 7 KLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 83 (211)
Q Consensus 7 ~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~ 83 (211)
+..+.++ |.. ++||++. +++.+.++.| .++.++.+++. ..+..+.+. .+.+.+
T Consensus 105 g~vi~lv-G~~GsGKTTl~~~LA~~l~~~~G-------~~V~lv~~D~~-----r~~a~eqL~-----------~~~~~~ 160 (296)
T 2px0_A 105 SKYIVLF-GSTGAGKTTTLAKLAAISMLEKH-------KKIAFITTDTY-----RIAAVEQLK-----------TYAELL 160 (296)
T ss_dssp SSEEEEE-ESTTSSHHHHHHHHHHHHHHTTC-------CCEEEEECCCS-----STTHHHHHH-----------HHHTTT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcC-------CEEEEEecCcc-----cchHHHHHH-----------HHHHhc
Confidence 3455555 554 5999999 9999988777 25677777642 223333332 223345
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C-CeEEEE--ecChHHH
Q psy2681 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q-GGVILV--SHDERLI 156 (211)
Q Consensus 84 gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~-~tiiiv--sHd~~~~ 156 (211)
|++... ..+. ..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-. . .+++++ ||+...+
T Consensus 161 gl~~~~------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~ 229 (296)
T 2px0_A 161 QAPLEV------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDM 229 (296)
T ss_dssp TCCCCB------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH
T ss_pred CCCeEe------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH
Confidence 553211 1232 334555554 4999999999 9999987665555444322 1 234444 9998888
Q ss_pred HhhCCeEEEEeCCcee
Q psy2681 157 RETDCELWALEKKNIR 172 (211)
Q Consensus 157 ~~~~~~v~~l~~g~i~ 172 (211)
.++++++..+..++++
T Consensus 230 ~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 230 KHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHTTTTSSSCCCEEE
T ss_pred HHHHHHHhcCCCCEEE
Confidence 8887776555556654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00027 Score=53.06 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCe-EEEEecC
Q psy2681 110 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG-VILVSHD 152 (211)
Q Consensus 110 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~t-iiivsHd 152 (211)
+++.+|++|++|||++ ++...+..+++++... +.+ +|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3467899999999998 6665588888887653 567 8888884
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00054 Score=59.83 Aligned_cols=57 Identities=7% Similarity=0.158 Sum_probs=40.0
Q ss_pred cCCCeEEEeCCCCCCCHHHH------------HHHHHHHH----hcCCeEEEEecCh-------------------HHHH
Q psy2681 113 NNPDILILDEPTNNLDIESI------------DALAEAIK----NYQGGVILVSHDE-------------------RLIR 157 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~------------~~l~~~l~----~~~~tiiivsHd~-------------------~~~~ 157 (211)
.+|+++++|||++.+|.... ..+.+.|+ +++.|||+++|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996432 33444443 4578999999982 2346
Q ss_pred hhCCeEEEEeCC
Q psy2681 158 ETDCELWALEKK 169 (211)
Q Consensus 158 ~~~~~v~~l~~g 169 (211)
..++.++.|..+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 778888888765
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=3.2e-05 Score=65.37 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred HhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHH
Q psy2681 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIR 157 (211)
Q Consensus 81 ~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~ 157 (211)
..+++...... ..++|+||+||+..+++++.+|+++ ||| ..+.+.+++. +.+|+++||+...+.
T Consensus 128 ~~vd~~~~~~~--~~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 128 ALVDAVHADEQ--MNQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLG 193 (318)
T ss_dssp EEEETTTHHHH--HHHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGG
T ss_pred EEEEHHHHHHH--HhhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHH
Confidence 34455444432 2379999999999999999999988 999 5566666554 469999999644333
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=5.2e-07 Score=79.43 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=68.0
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEe---------CCCCCCCCCC---
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFD---------QHSGEHLFPD--- 58 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~---------q~~~~~l~~~--- 58 (211)
.+.++ |-+ ++|||++ +.|.+.|++|+|.... ...+++.| |+|...++++
T Consensus 169 ii~I~-GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd 247 (418)
T 1p9r_A 169 IILVT-GPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 247 (418)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred eEEEE-CCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCC
Confidence 34444 554 5999999 9999999999986421 01233433 7664211233
Q ss_pred -CCHHHHHHhh-c---------CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEE
Q psy2681 59 -DTPCEYLMKL-F---------NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 120 (211)
Q Consensus 59 -~t~~e~~~~~-~---------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllL 120 (211)
+|+.+++... . ..+...+...+..+|+.... .+..|||||+|| |||+++.+|++..-
T Consensus 248 ~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~---~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 248 LETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL---ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 4666655421 1 11223344467778887543 467899999999 99999999999763
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.11 E-value=8e-07 Score=80.14 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=41.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEE--EecChHHHHhhCC
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL--VSHDERLIRETDC 161 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiii--vsHd~~~~~~~~~ 161 (211)
..+|+||+||+.++. + | |+|||+.+...+++.+.++ +.|+++ +||+++.+...|.
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 468999998876641 1 7 9999998877666666554 458875 9999999988765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0017 Score=57.99 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=55.3
Q ss_pred CCCCCChHHHHHHHHHH--HHhc---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHH
Q psy2681 93 PIRDLSGGQKARVALAE--LTLN---------------NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 155 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iar--al~~---------------~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~ 155 (211)
..+.+||||+|-..+|. ++++ .-.++++||. +-+|.+.....++++++++--+|+++=+ .
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~ 452 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--N 452 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--S
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--h
Confidence 46789999999754443 3332 2357999999 9999999999999999999988888877 5
Q ss_pred HHhhCCeEEEE
Q psy2681 156 IRETDCELWAL 166 (211)
Q Consensus 156 ~~~~~~~v~~l 166 (211)
+..+.+.++.+
T Consensus 453 i~p~v~~~~~~ 463 (483)
T 3euj_A 453 ISPERGTTYKL 463 (483)
T ss_dssp CCCSSSEEEEC
T ss_pred hhhccCceEEE
Confidence 55566666654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0044 Score=54.65 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCH--------HHHHHHHHHHH----hcCCeEEEEec--------
Q psy2681 94 IRDLSGGQKARVALAELTL--NNPDILILDEPTNNLDI--------ESIDALAEAIK----NYQGGVILVSH-------- 151 (211)
Q Consensus 94 ~~~LSgG~kqRv~iaral~--~~p~lllLDEPt~gLD~--------~~~~~l~~~l~----~~~~tiiivsH-------- 151 (211)
...+|.++.+ ..++.+. .+|+++++|+|+...+. .....+...|+ +++.+||+++|
T Consensus 293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~ 370 (454)
T 2r6a_A 293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR 370 (454)
T ss_dssp CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC
T ss_pred CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence 4579999886 4566665 68999999999997743 22234444444 45789999999
Q ss_pred -C--hH--------HHHhhCCeEEEEeCCce
Q psy2681 152 -D--ER--------LIRETDCELWALEKKNI 171 (211)
Q Consensus 152 -d--~~--------~~~~~~~~v~~l~~g~i 171 (211)
+ +. .++..+|.+++|..+..
T Consensus 371 ~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 3 22 46778999999976654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0052 Score=48.63 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=40.0
Q ss_pred cCCCeEEEeCCCCCC--CHHHHHH----HHHHHHhcCCeEEEEecChHH--------HHhhCCeEEEEeC
Q psy2681 113 NNPDILILDEPTNNL--DIESIDA----LAEAIKNYQGGVILVSHDERL--------IRETDCELWALEK 168 (211)
Q Consensus 113 ~~p~lllLDEPt~gL--D~~~~~~----l~~~l~~~~~tiiivsHd~~~--------~~~~~~~v~~l~~ 168 (211)
.+|+++++|+|++.+ |+..... +.+.+++.+.|||+++|.... +...+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5533332 333445567899999998775 4577898888864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00075 Score=63.63 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc--C-CeEEE-EecChHHHHhhCCe
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNY--Q-GGVIL-VSHDERLIRETDCE 162 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~-gLD~~~~~~l~~~l~~~--~-~tiii-vsHd~~~~~~~~~~ 162 (211)
.+..+|.|+.+|..++.+++.+++++++|||+. +||......++..+... + .+|++ +||+.+.+.++.+.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 456789999999999999999999999999996 99988766666655443 2 36666 49998888777654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.52 E-value=3.4e-06 Score=66.70 Aligned_cols=134 Identities=12% Similarity=0.013 Sum_probs=75.9
Q ss_pred ccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhh--cC----CCHHHHH
Q psy2681 6 LKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FN----LPYEKSR 77 (211)
Q Consensus 6 ~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~--~~----~~~~~~~ 77 (211)
.+..+.+++.-. ++|||++ |+|.+.|. | ..+|+++++.. .+. .+..++.... .+ .......
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGF--HLD-NRLLEPRGLLPRKGAPETFDFEGFQ 89 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGG--BCC-HHHHGGGTCGGGTTSGGGBCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCC--cCC-HHHHHHhcccccCCCCchhhHHHHH
Confidence 456777874443 5999999 99999876 4 24567776542 111 1111111000 01 1222223
Q ss_pred HHHHhCC----CCCccccCCCCCCChHHHHHHHHH-HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecC
Q psy2681 78 RQLGMFG----LPSYAHTIPIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 152 (211)
Q Consensus 78 ~~l~~~g----l~~~~~~~~~~~LSgG~kqRv~ia-ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd 152 (211)
+.+..+. +.-.... ....+|+||+|+++++ ++++.++.++++|||.. ..+...-..+++++++
T Consensus 90 ~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd~~ 157 (208)
T 3c8u_A 90 RLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLEVP 157 (208)
T ss_dssp HHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEECCC
T ss_pred HHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEeCC
Confidence 3333221 1101112 2346899999999998 88888888888888841 1223334578899999
Q ss_pred hHH-HHhhCCe
Q psy2681 153 ERL-IRETDCE 162 (211)
Q Consensus 153 ~~~-~~~~~~~ 162 (211)
.+. +.+...|
T Consensus 158 ~~~~~~R~~~R 168 (208)
T 3c8u_A 158 MADLEARLVQR 168 (208)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 876 4555444
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00021 Score=60.26 Aligned_cols=98 Identities=15% Similarity=0.034 Sum_probs=53.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEe---cC------C---eE-EEEEeCCCCCCCCC--CCCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK---SP------R---LR-IGKFDQHSGEHLFP--DDTPCEYL 65 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~---~~------~---~~-ig~v~q~~~~~l~~--~~t~~e~~ 65 (211)
+..+..+.++ |-. ++|||+| |.|...|..|+|.. .+ . .. +||++|.|....+. .+++ +++
T Consensus 170 ~~~G~~~~lv-G~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 170 HFQDKTTVFA-GQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GGTTSEEEEE-ESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred hcCCCEEEEE-CCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 3445666666 665 5999999 99999999999874 11 0 11 68999998622121 4677 665
Q ss_pred Hh-------h------cC-----CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHH
Q psy2681 66 MK-------L------FN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 104 (211)
Q Consensus 66 ~~-------~------~~-----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqR 104 (211)
.. . .+ .....+.++++.++++....+ ....++.|++||
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~~ 303 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKDR 303 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhhc
Confidence 21 1 11 122457889999999864443 345677888873
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.35 E-value=6.2e-05 Score=63.09 Aligned_cols=91 Identities=12% Similarity=-0.033 Sum_probs=54.5
Q ss_pred ccCeeeeecCCC--Ccccccc-ccCcccCCcceEEe---cC-----------CeEEEEEeCCCCC--------------C
Q psy2681 6 LKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRK---SP-----------RLRIGKFDQHSGE--------------H 54 (211)
Q Consensus 6 ~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~---~~-----------~~~ig~v~q~~~~--------------~ 54 (211)
.+..+.++ |-. ++|||++ |+|+..|++|+|.. .+ ...+||++|.|.. .
T Consensus 168 ~geiv~l~-G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~ 246 (301)
T 1u0l_A 168 KGKISTMA-GLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 246 (301)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred cCCeEEEE-CCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence 45566666 664 4999999 99999999999875 21 0137899998851 1
Q ss_pred CCCCCCHHHHHHhhc----CCCHHHHHHHHHhCCCC-CccccCCCCCCCh
Q psy2681 55 LFPDDTPCEYLMKLF----NLPYEKSRRQLGMFGLP-SYAHTIPIRDLSG 99 (211)
Q Consensus 55 l~~~~t~~e~~~~~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSg 99 (211)
+++++++ +++.... .....++.++++.+||+ +..+ +++..||.
T Consensus 247 l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~-~~~~~lse 294 (301)
T 1u0l_A 247 YFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYE-NYVKMFYE 294 (301)
T ss_dssp GSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHH
T ss_pred HHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHH-HHHHHHHH
Confidence 4566666 5543211 11234678899999996 4444 36677774
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.35 E-value=0.012 Score=50.24 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcC--CCeEEEeCCCCCC----------CH----HH---HHHHHH---HHHhcCCeEEEEecChH------
Q psy2681 103 ARVALAELTLNN--PDILILDEPTNNL----------DI----ES---IDALAE---AIKNYQGGVILVSHDER------ 154 (211)
Q Consensus 103 qRv~iaral~~~--p~lllLDEPt~gL----------D~----~~---~~~l~~---~l~~~~~tiiivsHd~~------ 154 (211)
+-+.++++++.+ |+++++|||++.+ |+ .. ...+.+ .+++.+.|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 456678888654 9999999999998 32 11 122222 23566889999999654
Q ss_pred ----------HHHhhCCeEEEEeCCc
Q psy2681 155 ----------LIRETDCELWALEKKN 170 (211)
Q Consensus 155 ----------~~~~~~~~v~~l~~g~ 170 (211)
.+..+|+.++.+..++
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~ 231 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIE 231 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEee
Confidence 2556788777776543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=5.1e-05 Score=64.40 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=74.4
Q ss_pred eecCCC--Ccccccc-ccCcc----cCCcceEEec-----------CCeEEEEEeCCCCCCCCCCCCHHHHHHhh---cC
Q psy2681 12 VLQGLR--NPLSFIK-PKGEL----TPNKGELRKS-----------PRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN 70 (211)
Q Consensus 12 ~i~~~~--~~sTLl~-i~G~~----~p~~G~i~~~-----------~~~~ig~v~q~~~~~l~~~~t~~e~~~~~---~~ 70 (211)
++.|-. ++|||++ ++|.+ .+.+|.+... .+..+.+++|... +++ ++.+++... +.
T Consensus 55 ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~--l~~--~~~e~L~~~~~~~~ 130 (334)
T 1in4_A 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHR--LNK--AVEELLYSAIEDFQ 130 (334)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGG--CCH--HHHHHHHHHHHTSC
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhh--cCH--HHHHHHHHHHHhcc
Confidence 344654 5999999 99887 6777765421 2346889988653 333 555555321 11
Q ss_pred C--------CHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 71 L--------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 71 ~--------~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
. ....+...+..+++.. ..+ ++..||+|++||+.++ .+||+.+...+.++|++.
T Consensus 131 ~~i~~~~~~~~~~i~~~l~~~~li~-at~-~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 131 IDIMIGKGPSAKSIRIDIQPFTLVG-ATT-RSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp CCC---------------CCCEEEE-EES-CGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred cceeeccCcccccccccCCCeEEEE-ecC-CcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 1 1122334555666644 343 6789999999998654 778887788888777653
Q ss_pred CCeEEEEecChHHHHhhCC
Q psy2681 143 QGGVILVSHDERLIRETDC 161 (211)
Q Consensus 143 ~~tiiivsHd~~~~~~~~~ 161 (211)
... .-++|+.+.+..++.
T Consensus 193 ~~~-~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 193 ASL-MDVEIEDAAAEMIAK 210 (334)
T ss_dssp HHH-TTCCBCHHHHHHHHH
T ss_pred HHH-cCCCcCHHHHHHHHH
Confidence 110 013677776666554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.053 Score=44.99 Aligned_cols=115 Identities=12% Similarity=0.042 Sum_probs=70.1
Q ss_pred CeeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCC
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 84 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~g 84 (211)
..+.++ |-. ++||+.. ++|.+.+.+|++.. +..++. .... .+. ...+.+..|
T Consensus 99 ~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l--------~~~d~~----~~~~-~~q-----------l~~~~~~~~ 153 (295)
T 1ls1_A 99 NLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLL--------VAADTQ----RPAA-REQ-----------LRLLGEKVG 153 (295)
T ss_dssp EEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEE--------EECCSS----CHHH-HHH-----------HHHHHHHHT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEE--------ecCCcc----cHhH-HHH-----------HHHhcccCC
Confidence 345555 654 5889988 99988887776643 222221 1101 111 112234445
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCC-CCCCCHHHHHHHHHHHHhcC--CeEEEEe
Q psy2681 85 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP-TNNLDIESIDALAEAIKNYQ--GGVILVS 150 (211)
Q Consensus 85 l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEP-t~gLD~~~~~~l~~~l~~~~--~tiiivs 150 (211)
++-.... ...+..+.+|.+|+.+...+++++|+||| +.++|......+........ .+++++.
T Consensus 154 l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 154 VPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp CCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred eEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 5422111 12344556788999998899999999999 99999988888877776542 3444444
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.018 Score=51.21 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeCCC----------CCCCHHHHHHHHHHHHhc-------CCeEEEEecChHHH
Q psy2681 99 GGQKARVALAELTLNNPDILILDEPT----------NNLDIESIDALAEAIKNY-------QGGVILVSHDERLI 156 (211)
Q Consensus 99 gG~kqRv~iaral~~~p~lllLDEPt----------~gLD~~~~~~l~~~l~~~-------~~tiiivsHd~~~~ 156 (211)
++++.|..+++|....|.+|++||+. +|.|......+.+++..+ +..||.+||..+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 67888999999999999999999993 466766655555555432 34788899988654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.00019 Score=55.33 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=55.4
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCC---cceEEecCC---------------eEEE----EEeCCCCCCCCCCCCHHH
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPN---KGELRKSPR---------------LRIG----KFDQHSGEHLFPDDTPCE 63 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~---~G~i~~~~~---------------~~ig----~v~q~~~~~l~~~~t~~e 63 (211)
.+.++ |-. ++|||++ +.|.++|+ .|.|..+.. ..+| +++|++. ++..
T Consensus 4 ~v~Iv-G~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~--~~i~----- 75 (171)
T 2f1r_A 4 ILSIV-GTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL--AFIR----- 75 (171)
T ss_dssp EEEEE-ESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEE--EEEE-----
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcE--EEEe-----
Confidence 45566 432 4899999 99999998 788864321 1233 5555432 1100
Q ss_pred HHHhhcCCCHH---HHHHHHHh-C-CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy2681 64 YLMKLFNLPYE---KSRRQLGM-F-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118 (211)
Q Consensus 64 ~~~~~~~~~~~---~~~~~l~~-~-gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~ll 118 (211)
....+ .+.+++.. + |++.. -...|||||+||++||||++.+|++.
T Consensus 76 ------~~~~~~~a~l~~~i~~~l~g~dt~----i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 76 ------RVSEEEGNDLDWIYERYLSDYDLV----ITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ------ECCHHHHTCHHHHHHHHTTTCSEE----EEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ------cCChhhhhCHHHHHHhhCCCCCEE----EECCcCCCCCcEEEEEecccCCCccC
Confidence 00111 23444444 4 34322 23359999999999999999999873
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.04 Score=46.80 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=48.5
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHhc--CCeEEEEe--cChH
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILD-EPTNNLDIESIDALAEAIKNY--QGGVILVS--HDER 154 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLD-EPt~gLD~~~~~~l~~~l~~~--~~tiiivs--Hd~~ 154 (211)
++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+... +..+|+|. ||+.
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 56789999998876 55556778889999 999999999888777777653 56788888 8864
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0011 Score=59.70 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=54.2
Q ss_pred HHHHhCCCCCcccc--CCCCCCChHHHHHH----------HHHHHHhcCCC-eEEEeCCCCCCCHHHHHHHHHHHH----
Q psy2681 78 RQLGMFGLPSYAHT--IPIRDLSGGQKARV----------ALAELTLNNPD-ILILDEPTNNLDIESIDALAEAIK---- 140 (211)
Q Consensus 78 ~~l~~~gl~~~~~~--~~~~~LSgG~kqRv----------~iaral~~~p~-lllLDEPt~gLD~~~~~~l~~~l~---- 140 (211)
+++..+|+.+.... +....+|+||+|+. .+++++...|. ++++||+++.++... ..+.+.+.
T Consensus 248 ~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~-~~~~~~l~~Lar 326 (512)
T 2ius_A 248 KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG-KKVEELIARLAQ 326 (512)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh-HHHHHHHHHHHH
Confidence 56778887653221 11235788887752 35566777888 899999999887432 23333332
Q ss_pred ---hcCCeEEEEecChH-------HHHhhCCeEEE
Q psy2681 141 ---NYQGGVILVSHDER-------LIRETDCELWA 165 (211)
Q Consensus 141 ---~~~~tiiivsHd~~-------~~~~~~~~v~~ 165 (211)
+.|.++|++||.+. ....+..|+.+
T Consensus 327 ~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 327 KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 23569999999987 44555555543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.019 Score=48.19 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=57.5
Q ss_pred eeeeecCCC--Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHHHhCCC
Q psy2681 9 RIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 85 (211)
Q Consensus 9 ~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l~~~gl 85 (211)
.+.++ |.. ++||+++ +++.+.+.+|+|.. +..+. +.. ... +....+.+.+|+
T Consensus 106 vi~iv-G~~GsGKTTl~~~LA~~l~~~g~kV~l--------v~~D~----~r~-~a~-----------eqL~~~~~~~gl 160 (306)
T 1vma_A 106 VIMVV-GVNGTGKTTSCGKLAKMFVDEGKSVVL--------AAADT----FRA-AAI-----------EQLKIWGERVGA 160 (306)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEE--------EEECT----TCH-HHH-----------HHHHHHHHHHTC
T ss_pred EEEEE-cCCCChHHHHHHHHHHHHHhcCCEEEE--------Ecccc----ccH-HHH-----------HHHHHHHHHcCC
Confidence 34444 665 4999999 99999887776543 33232 110 011 123345556666
Q ss_pred CCccccCCCCCCChHHHHHH---HHHHHHhcCCCeEEEeCCCC
Q psy2681 86 PSYAHTIPIRDLSGGQKARV---ALAELTLNNPDILILDEPTN 125 (211)
Q Consensus 86 ~~~~~~~~~~~LSgG~kqRv---~iaral~~~p~lllLDEPt~ 125 (211)
+. +..+|+|+.+++ ++++++..+|+++|+|||..
T Consensus 161 ~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 161 TV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp EE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 42 236789999999 89999999999999999975
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.01 Score=50.71 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHH---hc--CCCeEEEeCCC
Q psy2681 96 DLSGGQKARVALAELT---LN--NPDILILDEPT 124 (211)
Q Consensus 96 ~LSgG~kqRv~iaral---~~--~p~lllLDEPt 124 (211)
.+|+|++||..|++++ .. ++.++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 66 89999999997
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.086 Score=44.79 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH-HHHHhc-CCeEEEEec
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIKNY-QGGVILVSH 151 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~-~~tiiivsH 151 (211)
..||.++.+|+..|...+.+++++|.|+|... +....... .+.++. +..+|+|-|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 47999999999999999999999999999754 33333333 333344 456777654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.065 Score=40.85 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 103 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 103 qRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+.+.+|++++.+|+++++| ||++|..+...+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 999999999999988864
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.013 Score=44.23 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=41.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCe------EEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRL------RIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~------~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++-.. ++|||++ ++|.+ |++|+|...... ...+++|++. ++ .+++.+++.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~--l~-~ltv~e~l~ 96 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFD--LY-RLADPEELE 96 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEE--CT-TCSCTTHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccc--cc-cCCcHHHHH
Confidence 345677888884453 5999999 99999 999999754311 0126788753 56 777766653
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.0059 Score=51.02 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=60.4
Q ss_pred cccCeeeeecCCC-Ccccccc-ccCccc--CCcceEEe---cCC-------eEEEEEeCCCCCCCCCCCCHHHHHHhhcC
Q psy2681 5 CLKLRIAVLQGLR-NPLSFIK-PKGELT--PNKGELRK---SPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFN 70 (211)
Q Consensus 5 ~~~~~~~~i~~~~-~~sTLl~-i~G~~~--p~~G~i~~---~~~-------~~ig~v~q~~~~~l~~~~t~~e~~~~~~~ 70 (211)
..+..+.++++.. ++|||++ ++|++. |++|+|.. +.. ..+|++ |... +++.+++.+++....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~--~~~~~~~~~~~~~~~- 153 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKG--FPESYDMHRLVKFVS- 153 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTT--SGGGBCHHHHHHHHH-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCC--CCCCccHHHHHHHHH-
Confidence 3456788886665 5999999 999988 99999876 321 124455 4432 344556555543211
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q psy2681 71 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 128 (211)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD 128 (211)
...+-..... .+....+.+ +|+..+.+.+.+|+++|+|.|....+
T Consensus 154 ----------~l~~~~~~i~-~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 154 ----------DLKSGVPNVT-APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp ----------HHTTTCSCEE-ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ----------HHhCCCCcee-ccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 1111111011 133333333 33333334556899999999998877
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.001 Score=59.75 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=48.4
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-HhcCCeEEEEecChHHH--HhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 109 ELTLNNPDILILDEPTNNLDIESIDALAEAI-KNYQGGVILVSHDERLI--RETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 109 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~tiiivsHd~~~~--~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|||..+ ++||+ ||++.+||. ...+..-| +.++.++.++||+++.+ .++++++..+..++++...++.++..
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~ 101 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA 101 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence 789999 99999 999999994 33332222 33455789999999887 66666666555555544345665544
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.24 Score=38.74 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=49.6
Q ss_pred HHHHHHHHHHh--cCCCeEEEeCCCC--CCCHHHHHHHHHHHHhc--CCeEEEEecCh-HHHHhhCCeEEEEeCCc
Q psy2681 102 KARVALAELTL--NNPDILILDEPTN--NLDIESIDALAEAIKNY--QGGVILVSHDE-RLIRETDCELWALEKKN 170 (211)
Q Consensus 102 kqRv~iaral~--~~p~lllLDEPt~--gLD~~~~~~l~~~l~~~--~~tiiivsHd~-~~~~~~~~~v~~l~~g~ 170 (211)
+..+..++..+ .+.+++||||.+. .++......+.++|.+. ...||+++.+. ..+.+.+|-|-.|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 44555666667 6789999999976 34445566788888765 35788888774 56667889998886543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.11 Score=45.49 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCCeEEEeCCCCCCCH-HHHHHHHHHHHhc---CCeEEEEecCh
Q psy2681 114 NPDILILDEPTNNLDI-ESIDALAEAIKNY---QGGVILVSHDE 153 (211)
Q Consensus 114 ~p~lllLDEPt~gLD~-~~~~~l~~~l~~~---~~tiiivsHd~ 153 (211)
+|++|++||+..-.+. ..+..++..+... +..||++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999877654 6677787777543 56899999973
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=0.11 Score=43.83 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2681 95 RDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAEAIKNY 142 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~------~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 142 (211)
..+|+|++|++..+++++. .|++++ ||++|..+...+++.|.+.
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 4689999999999999987 688886 9999999999999998763
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=0.36 Score=40.78 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=38.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---C-CeEEEEec
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---Q-GGVILVSH 151 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~-~tiiivsH 151 (211)
.+.++.++++..+++..+.+|+++|+.-..+..|.... ....+++.. + .+|+++|.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-DAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC-HHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH-HHHHHHHHhcccCCCEEEEEeC
Confidence 34678899999999999999998888854444554432 333444433 3 47777776
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.99 E-value=0.51 Score=39.48 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=36.7
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHh------cCCeEEEEecChHHHHhhC
Q psy2681 113 NNPDILILDEPTNNLDIESIDALAEAIKN------YQGGVILVSHDERLIRETD 160 (211)
Q Consensus 113 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~ 160 (211)
.+|.++++||+... |......+..++.+ .+.++|++||+.+....+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 56889999999876 88888888888753 2458999999987655443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.13 E-value=1.3 Score=35.78 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH----------HHHHHHHHHHHhcC-------CeEEEEecCh
Q psy2681 98 SGGQKARVALAELTLNNPDILILDEPTNNLDI----------ESIDALAEAIKNYQ-------GGVILVSHDE 153 (211)
Q Consensus 98 SgG~kqRv~iaral~~~p~lllLDEPt~gLD~----------~~~~~l~~~l~~~~-------~tiiivsHd~ 153 (211)
+++++.+..+..+...+|.+|++||+.+-++. .....++..+.... ..||.+|++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 56788888899999999999999999876543 22334555555431 2577778864
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=0.29 Score=37.18 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 105 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 105 v~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
...|++++.+|+++++| ||++|..+...+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999998888764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=85.91 E-value=0.67 Score=38.47 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH-HHHHHHHhcCCe--EEEEec
Q psy2681 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNYQGG--VILVSH 151 (211)
Q Consensus 97 LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~-~l~~~l~~~~~t--iiivsH 151 (211)
||.++++|+..|...+.++++++.|+|... +.... .+..+.++.+.. +|+|-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 999999999999999999999999999744 43333 233333444556 888876
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=85.67 E-value=0.1 Score=40.14 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-CCeEEEEecChH
Q psy2681 76 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGGVILVSHDER 154 (211)
Q Consensus 76 ~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~tiiivsHd~~ 154 (211)
..++.+.+|... -.|.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.+... +.++|+.+|.+.
T Consensus 47 ~~~i~~~~g~~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~ 116 (206)
T 1jjv_A 47 LSKIVEHFGAQI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLI 116 (206)
T ss_dssp HHHHHHHHCTTC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTT
T ss_pred HHHHHHHhCHHH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhh
Confidence 445556666421 13678899999999888887654333 3456677777777777654 457888899876
Q ss_pred HH--HhhCCeEEEEeC
Q psy2681 155 LI--RETDCELWALEK 168 (211)
Q Consensus 155 ~~--~~~~~~v~~l~~ 168 (211)
.. ...|+.++++.-
T Consensus 117 e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 117 ENKLTALCDRILVVDV 132 (206)
T ss_dssp TTTCGGGCSEEEEEEC
T ss_pred hcCcHhhCCEEEEEEC
Confidence 65 567888888864
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=85.63 E-value=0.34 Score=41.33 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=43.5
Q ss_pred HHHHHhCCCCCcc----ccCCCCCCChHHHHHHHHH----HHH-hcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 77 RRQLGMFGLPSYA----HTIPIRDLSGGQKARVALA----ELT-LNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 77 ~~~l~~~gl~~~~----~~~~~~~LSgG~kqRv~ia----ral-~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
.++++.+++.+.. .+ ++..+|+|+++++.++ +++ ..+|++ +|+|++|..+...+++.|.+
T Consensus 282 ~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 4567777765432 33 5677898988888877 555 444454 79999999999999888865
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=85.00 E-value=0.2 Score=45.62 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 141 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 141 (211)
+.+|+|++|++..++....++.+|++||... |++..+..|++.|.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 5799999999999999999999999999988 899999999999974
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=84.59 E-value=0.0035 Score=48.86 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=37.1
Q ss_pred HHH-HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEE
Q psy2681 107 LAE-LTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 166 (211)
Q Consensus 107 iar-al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l 166 (211)
.++ +++.+|++++|||||+++|..+...+.+.|...... +.++|.. ..+|.++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivn 171 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIIN 171 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEEC
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEEC
Confidence 455 678888888999999999998888887777653211 2334511 456776654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=81.24 E-value=0.58 Score=38.88 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=29.6
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHhc---CCeEEEEecChHHHHh
Q psy2681 114 NPDILILDEPTNNLD---IESIDALAEAIKNY---QGGVILVSHDERLIRE 158 (211)
Q Consensus 114 ~p~lllLDEPt~gLD---~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~ 158 (211)
.|.++++||+.+..+ ......+.+.+... +.++|++||+......
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 488999999987652 33444555555322 4589999998865433
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.18 E-value=0.014 Score=47.86 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=38.3
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCC------------CCCHHHHHHHHHHHHh
Q psy2681 93 PIRDLSGGQKARVALAELTLNNPDILILDEPTN------------NLDIESIDALAEAIKN 141 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~------------gLD~~~~~~l~~~l~~ 141 (211)
.+.+|||||+||+.|++|+.++|++| |||+. --|...+..+++.+.+
T Consensus 134 ~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 134 LLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp HHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred HHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 56789999999999999999999985 99864 3467777777776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 211 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-16 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-15 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-15 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-14 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-14 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-14 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-14 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-14 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-13 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-13 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-13 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 9e-13 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-12 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-11 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-11 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-10 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-10 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-09 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-08 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-06 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 1e-05 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-04 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 72.6 bits (178), Expect = 2e-16
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 30 TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE------YLMKLFNLPYEKSRRQL--- 80
+ EL K R +IG Q +L P T E + E+ R++
Sbjct: 71 DLDDDELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 81 -GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139
M L LSGGQ+ RVA+A NNP I++ D+PT LD ++ + + + +
Sbjct: 129 LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLL 188
Query: 140 KNYQG----GVILVSHDERLIRETD 160
K V++V+HD + R +
Sbjct: 189 KKLNEEDGKTVVVVTHDINVARFGE 213
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 72.2 bits (177), Expect = 5e-16
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 84 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 143
GL + + LSGGQ+ R+A+A L + ILILDE T+ LD ES A+ A+ Q
Sbjct: 141 GLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 199
Query: 144 GG--VILVSHDERLIRETD 160
++++H I + D
Sbjct: 200 KNRTSLVIAHRLSTIEQAD 218
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 69.9 bits (171), Expect = 2e-15
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 28 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----L 80
ELT R +IG QH +L T + ++L N P ++ +R+ L
Sbjct: 68 ELTTLSESELTKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL 125
Query: 81 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140
+ GL + P +LSGGQK RVA+A +NP +L+ DE T+ LD + ++ E +K
Sbjct: 126 SLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184
Query: 141 NYQGG----VILVSHDERLIRE 158
+ ++L++H+ +++
Sbjct: 185 DINRRLGLTILLITHEMDVVKR 206
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 69.8 bits (171), Expect = 3e-15
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQK R+++A + LNNP ILILDE T+ LD+ES + EA+ ++V+H
Sbjct: 155 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 214
Query: 155 LIRETD 160
I D
Sbjct: 215 TITHAD 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 67.9 bits (166), Expect = 1e-14
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 54 HLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 106
++P T E + +K+ P ++ ++ + + + P LSGGQ+ RVA
Sbjct: 88 AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-AQLSGGQRQRVA 146
Query: 107 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHDERLIRE 158
+A + PD+L++DEP +NLD + A+ IK Q I V+HD+
Sbjct: 147 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT 202
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 67.7 bits (165), Expect = 1e-14
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 8 LRIAVLQGLRNPLS---FIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 64
LR+ + GL P +I K P KG I Q L+P T +
Sbjct: 46 LRM--IAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS--YALYPHMTVYDN 101
Query: 65 LM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 117
+ KL +P ++ ++ + GL + P R+LSGGQ+ RVAL + P +
Sbjct: 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQV 160
Query: 118 LILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHDERLIRE 158
++DEP +NLD + + +K Q I V+HD+
Sbjct: 161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMT 205
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.4 bits (167), Expect = 1e-14
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 16/146 (10%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK------SRRQL 80
GEL ++G ++ S R + Q S + P + + Y + Q
Sbjct: 84 GELEASEGIIKHSGR--VSFCSQFS--WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQ 139
Query: 81 GMFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
+ +T+ LSGGQ+AR++LA + D+ +LD P LD+ + + + E
Sbjct: 140 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 199
Query: 138 AIKNYQGG---VILVSHDERLIRETD 160
+ ILV+ +R+ D
Sbjct: 200 SCVCKLMANKTRILVTSKMEHLRKAD 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 66.4 bits (162), Expect = 6e-14
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 26 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLPYEKSRRQ-- 79
G+L + R R+ QH +L+ T E +M ++ L +R +
Sbjct: 73 DGQLKVADKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERAL 130
Query: 80 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137
L G+ A LSGGQ+ RV++A PD+L+ DEPT+ LD E + +
Sbjct: 131 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 190
Query: 138 AIKNYQG---GVILVSHDERLIRE 158
++ +++V+H+ R
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARH 214
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 65.8 bits (160), Expect = 9e-14
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 74 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 133
EK+ + L L +LSGGQ V + + NP ++++DEP +
Sbjct: 129 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 187
Query: 134 ALAEAIKNYQG---GVILVSHDERLIRE 158
+ + + +++ H ++
Sbjct: 188 DIFNHVLELKAKGITFLIIEHRLDIVLN 215
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 63.8 bits (155), Expect = 4e-13
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
LSGGQ+ R+A+A +NNP ILI DE T+ LD ES + + G VI+++H
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199
Query: 155 LIRETD 160
++ D
Sbjct: 200 TVKNAD 205
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 63.0 bits (153), Expect = 9e-13
Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ------LGMF-GLPSYAHTIP 93
R+G G +FP+ T E LM +K + +F L +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVS 150
LSGG++ +A+ ++ P +L++DEP+ L + + E I+ ++LV
Sbjct: 138 -GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 151 HDERLIRE 158
+ +
Sbjct: 197 QNALGALK 204
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 62.2 bits (151), Expect = 1e-12
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 154
+SGGQ+ R+A+A L NP IL+LDE T +LD ES + +A+ + G ++++H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199
Query: 155 LIRETD 160
I + D
Sbjct: 200 TIVDAD 205
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 59.2 bits (143), Expect = 1e-11
Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 22 FIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-- 79
++KP G + +I + + +YL + +L K +
Sbjct: 50 YLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV--PRKISVEDYLKAVASLYGVKVNKNEI 107
Query: 80 ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136
L + + +LS G RV LA L N +I +LD+P +D +S +
Sbjct: 108 MDALESVEVLDLKK--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 165
Query: 137 EAIKNY--QGGVILVSHDERL 155
++I + G++++S E L
Sbjct: 166 KSILEILKEKGIVIISSREEL 186
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 57.3 bits (138), Expect = 8e-11
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 15/151 (9%)
Query: 22 FIKPKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD-DTPCEYLMKLFNLPYEKSRRQ- 79
KG + L ++ + + P TP + + L ++
Sbjct: 48 MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 107
Query: 80 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIE 130
G L LSGG+ RV LA + L +L+LDEP N+LD+
Sbjct: 108 DVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 131 SIDALAEAIKNYQG---GVILVSHDERLIRE 158
AL + + +++ SHD
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLR 197
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 56.9 bits (137), Expect = 1e-10
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 36 LRKSPRLRIGKFDQHSGEHLFPDDTP---CEYLMKLFNLPY----EKSRRQLGMFGLPSY 88
R I + +G + + ++ + E R + GL
Sbjct: 69 EPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK 126
Query: 89 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GG 145
+ S G ++ +A + NP + ILDEPT+ LD+ + + + +K
Sbjct: 127 IKD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 185
Query: 146 VILVSHDERLIRE 158
+++ SH+ +
Sbjct: 186 ILVSSHNMLEVEF 198
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (136), Expect = 2e-10
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 37 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY--------EKSRRQLGMFGLPSY 88
+ ++ Q +F L P KS + GLP
Sbjct: 83 HRYLHRQVAAVGQEP--QVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQG 140
Query: 89 AHTI---PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKN 141
T LSGGQ+ VALA + P +LILD+ T+ LD S L E+ +
Sbjct: 141 YDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPER 200
Query: 142 YQGGVILVSHDERLIRETD 160
Y V+L++ L+ + D
Sbjct: 201 YSRSVLLITQHLSLVEQAD 219
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 53.8 bits (129), Expect = 2e-09
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 93
+G Q L+P + E + +KL E ++ + L P
Sbjct: 71 ERGVGMVFQS--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP 128
Query: 94 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGG-VILV 149
+ LSGGQ+ RVA+ + P + +LDEP +NLD + + G +I V
Sbjct: 129 -KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187
Query: 150 SHDERLIRE 158
+HD+
Sbjct: 188 THDQVEAMT 196
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 50.9 bits (121), Expect = 1e-08
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 8 LRIAVLQGLRNPLS-FIKPKGELTPNKGELRKSPRLR-IGKFDQHSGEHLFPDDTPCEYL 65
+RI + GL P + + L + G+L P R IG Q L+P+ T E +
Sbjct: 48 MRI--IAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT--WALYPNLTAFENI 103
Query: 66 ---MKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 118
+ + ++ + + + P R+LSG Q+ RVALA + +P +L
Sbjct: 104 AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLL 162
Query: 119 ILDEPTNNLD---IESIDALAEAIKNYQGG-VILVSHDERLIRE 158
+LDEP +NLD +S AL + +++ G +++VSHD I
Sbjct: 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA 206
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 44.3 bits (104), Expect = 3e-06
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 41 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRD 96
+ I Q+ LFP + L + ++ + P
Sbjct: 71 KHDIAFVYQN--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-LT 127
Query: 97 LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQG-GVILVSHD 152
LSGG++ RVALA + NP IL+LDEP + LD E+ + + V+ ++HD
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 153 ERLIRE 158
+ R
Sbjct: 188 QTEARI 193
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.8 bits (99), Expect = 1e-05
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 35 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 94
EL K+P + ++ + +D P +K P K + +
Sbjct: 285 ELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYL----------- 333
Query: 95 RDLSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VI 147
SGG+K ALA L + +LDE LDI ++ +A I+ ++ I
Sbjct: 334 ---SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 148 LVSHDERLIRETD 160
++S + ++D
Sbjct: 391 VISLKNTMFEKSD 403
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.5 bits (97), Expect = 2e-05
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 21/150 (14%)
Query: 27 GELTPNKGELR---------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 77
G + P++GE+R R IG Q LFP + + R
Sbjct: 46 GIVKPDRGEVRLNGADITPLPPERRGIGFVPQD--YALFPHLSVYRNIAYGLRNVERVER 103
Query: 78 RQ-----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 132
+ G+ P LSGG++ RVALA + P +L+LDEP + +D+++
Sbjct: 104 DRRVREMAEKLGIAHLLDRKP-ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162
Query: 133 DALAEAIKNYQGG----VILVSHDERLIRE 158
L E ++ Q ++ V+HD
Sbjct: 163 GVLMEELRFVQREFDVPILHVTHDLIEAAM 192
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 37.3 bits (85), Expect = 5e-04
Identities = 16/166 (9%), Positives = 40/166 (24%), Gaps = 14/166 (8%)
Query: 27 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 86
L + + + + K F + +
Sbjct: 22 ERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV---- 77
Query: 87 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI--ESIDALAEAIKNYQG 144
+ A E + ++I+DE + D + + + +
Sbjct: 78 ------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNV 131
Query: 145 GVILVSHDERLIRETDCELWALEKKNIRKFN-GDFDDYREKLLTSL 189
V+ + E+ L + + + D E +L+ L
Sbjct: 132 NVVATIPIRDVHPLVK-EIRRLPGAVLIELTPENRDVILEDILSLL 176
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 211 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.48 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.14 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.74 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.57 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.09 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.24 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 92.79 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 82.22 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.7e-43 Score=286.67 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=145.8
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh---
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~--- 68 (211)
+..|..+.++ |-. ++|||++ ++|+++|++|+|..++ +++|||+||++. +|+.+|+.+|+...
T Consensus 29 v~~Ge~~~li-GpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~ltv~enl~~~~~~ 105 (239)
T d1v43a3 29 IKDGEFLVLL-GPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA--VWPHMTVYENIAFPLKI 105 (239)
T ss_dssp ECTTCEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC--------CCCHHHHHHTTCC-
T ss_pred ECCCCEEEEE-CCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechh--hcccchHHHHHHHHHHH
Confidence 5667888899 554 5999999 9999999999998653 346999999975 89999999998643
Q ss_pred cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy2681 69 FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 142 (211)
Q Consensus 69 ~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-- 142 (211)
.+.+. +++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||+||||.++..++++|+++
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~ 184 (239)
T d1v43a3 106 KKFPKDEIDKRVRWAAELLQIEELLNR-YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184 (239)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTS-CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 23443 346789999999988775 88999999999999999999999999999999999999999999998764
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++.++|||+++|++|+++. .|+++++.
T Consensus 185 ~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el~ 225 (239)
T d1v43a3 185 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVY 225 (239)
T ss_dssp HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 6799999999999999999999999999975 68877754
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=9.3e-43 Score=284.63 Aligned_cols=174 Identities=22% Similarity=0.332 Sum_probs=150.3
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
+..|..+.++ |-. ++|||++ |+|+++|++|+|..++ +++|||+||++. +++.+|+.+++
T Consensus 26 i~~Ge~~~li-G~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~--L~~~ltV~eni 102 (240)
T d1g2912 26 VKDGEFMILL-GPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA--LYPHMTVYDNI 102 (240)
T ss_dssp EETTCEEEEE-CSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC--CCTTSCHHHHH
T ss_pred EcCCCEEEEE-CCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchh--hcchhhhhHhh
Confidence 4678889999 554 5999999 9999999999997542 346999999975 89999999998
Q ss_pred Hh---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~---~~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
.. .++.+. +++.++++.+|+++..++ ++.+|||||||||+|||||+++|++|||||||+|||+.++..++++
T Consensus 103 ~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~ 181 (240)
T d1g2912 103 AFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (240)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred hhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHH
Confidence 63 334443 347789999999987765 8999999999999999999999999999999999999999999999
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||+||||++++.++|||+++|++|+++. .|+++++.
T Consensus 182 l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~-~G~~~el~ 228 (240)
T d1g2912 182 LKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVY 228 (240)
T ss_dssp HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 8754 7799999999999999999999999999975 57776653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=9.7e-43 Score=284.50 Aligned_cols=175 Identities=26% Similarity=0.341 Sum_probs=151.0
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYL 65 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~ 65 (211)
.+..|+.+.++ |-. ++|||++ |+|+++|++|+|..++ ++++||+||++. +|+.+|+.||+
T Consensus 27 ~i~~Ge~~~ii-G~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~--L~p~ltv~eni 103 (242)
T d1oxxk2 27 NIENGERFGIL-GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA--LYPNLTAFENI 103 (242)
T ss_dssp EECTTCEEEEE-CSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC--CCTTSCHHHHH
T ss_pred EECCCCEEEEE-CCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccc--ccccccHHHHh
Confidence 35678889999 554 4999999 9999999999997532 346999999975 89999999999
Q ss_pred Hhh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy2681 66 MKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 138 (211)
Q Consensus 66 ~~~---~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~ 138 (211)
... .+.+. +++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++
T Consensus 104 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~ 182 (242)
T d1oxxk2 104 AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182 (242)
T ss_dssp HGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH
T ss_pred hhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhC-ChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHH
Confidence 743 23443 457789999999887765 8899999999999999999999999999999999999999999998
Q ss_pred HHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 139 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 139 l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+++ +.|||+||||++++.++|||+++|++|+++. .|+++++.
T Consensus 183 i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~-~g~~~el~ 229 (242)
T d1oxxk2 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLY 229 (242)
T ss_dssp HHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 8764 6799999999999999999999999999975 67776653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-42 Score=282.13 Aligned_cols=174 Identities=21% Similarity=0.246 Sum_probs=151.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHh---h
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMK---L 68 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~---~ 68 (211)
+..|+.+.++ |-. ++|||++ ++|+++|++|+|..++ ++++||+||++. +|+.+||.+|+.. .
T Consensus 23 i~~Ge~~~li-GpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~--l~~~~tV~enl~~~~~~ 99 (229)
T d3d31a2 23 VESGEYFVIL-GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS--LFPHMNVKKNLEFGMRM 99 (229)
T ss_dssp ECTTCEEEEE-CCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC--CCTTSCHHHHHHHHHHH
T ss_pred ECCCCEEEEE-CCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccc--cCccccHHHHHHHHHhh
Confidence 4567888899 554 4999999 9999999999998653 346999999975 8999999999863 2
Q ss_pred cC-CCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C
Q psy2681 69 FN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q 143 (211)
Q Consensus 69 ~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~ 143 (211)
.+ ...+++.++++.+++.+..++ ++.+|||||||||+|||||+++|++|||||||+|||+.++..++++|+++ +
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g 178 (229)
T d3d31a2 100 KKIKDPKRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178 (229)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTS-CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHhcchhhHhC-ChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCC
Confidence 23 246678899999999988775 89999999999999999999999999999999999999999999998654 6
Q ss_pred CeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 144 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 144 ~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
.|||+||||++++.++|||+++|++|+++. .|+++++.
T Consensus 179 ~tii~vtHd~~~~~~~~drv~vm~~G~iv~-~g~~~el~ 216 (229)
T d3d31a2 179 LTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIF 216 (229)
T ss_dssp CEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHH
T ss_pred cEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 799999999999999999999999999975 68877653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.6e-43 Score=284.61 Aligned_cols=175 Identities=19% Similarity=0.242 Sum_probs=119.5
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhh--
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~-- 68 (211)
.+..|..+.++ |-. ++|||++ ++|+++|++|+|..++ +++|||+||++. +++.+|+++++...
T Consensus 22 ~i~~Gei~~li-GpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~--l~~~~tv~eni~~~~~ 98 (232)
T d2awna2 22 DIHEGEFVVFV-GPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA--LYPHLSVAENMSFGLK 98 (232)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCC--C---------------
T ss_pred EEcCCCEEEEE-CCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccc--cccchhHHHHHHHHHH
Confidence 35678888899 554 5999999 9999999999998653 346999999975 89999999998632
Q ss_pred -cCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 69 -FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 69 -~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+.+ .+++.++++.+++.+..++ ++.+|||||||||+|||||+++|++|||||||+|||+.++..+++.|+++
T Consensus 99 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~-~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~ 177 (232)
T d2awna2 99 LAGAKKEVINQRVNQVAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177 (232)
T ss_dssp ------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2222 3457889999999988775 88999999999999999999999999999999999999999999988653
Q ss_pred ---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 143 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 143 ---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
+.|||+||||++++.++|||+++|++|+++. .|+++++.
T Consensus 178 ~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el~ 219 (232)
T d2awna2 178 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELY 219 (232)
T ss_dssp HHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EeCHHHHH
Confidence 6799999999999999999999999999975 67877653
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-42 Score=282.59 Aligned_cols=174 Identities=22% Similarity=0.298 Sum_probs=149.1
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC--------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~--------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
.+..|..+.+++--. ++|||++ |+|+.+|++|+|..++ ++++|||||++. +++.+|+.+++.
T Consensus 27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~--l~~~~tv~eni~ 104 (240)
T d3dhwc1 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN--LLSSRTVFGNVA 104 (240)
T ss_dssp EECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC--CCTTSBHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccc--cCCCccHHHHHH
Confidence 456788889994443 5999999 9999999999998653 235999999974 899999999986
Q ss_pred h---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 67 K---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 67 ~---~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
. ..+.+ .+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|
T Consensus 105 ~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~-~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l 183 (240)
T d3dhwc1 105 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (240)
T ss_dssp HHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSS-CBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHH
Confidence 3 22333 3467889999999988765 88999999999999999999999999999999999999999999998
Q ss_pred Hhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHH
Q psy2681 140 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 180 (211)
Q Consensus 140 ~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~ 180 (211)
+++ +.|||+||||++++..+|||+++|++|+++. .|++++
T Consensus 184 ~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~-~G~~~e 227 (240)
T d3dhwc1 184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSE 227 (240)
T ss_dssp HHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE-EEETTT
T ss_pred HHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 764 6799999999999999999999999999975 566554
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.5e-42 Score=280.03 Aligned_cols=170 Identities=25% Similarity=0.353 Sum_probs=146.8
Q ss_pred CeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc-CCC--
Q psy2681 8 LRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLP-- 72 (211)
Q Consensus 8 ~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~-~~~-- 72 (211)
..+.++ |-. ++|||++ |+|+++|++|+|..++ +++|||+||++. +++.+||.||+.... ...
T Consensus 25 e~~~li-GpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~--l~~~ltV~enl~~~l~~~~~~ 101 (240)
T d2onka1 25 DYCVLL-GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPHLSVYRNIAYGLRNVERV 101 (240)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC--CCTTSCHHHHHHTTCTTSCHH
T ss_pred EEEEEE-CCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchh--hcccchhhHhhhhhhcccCHH
Confidence 456666 554 5999999 9999999999998653 457999999975 899999999987432 222
Q ss_pred --HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CCeE
Q psy2681 73 --YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGV 146 (211)
Q Consensus 73 --~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~----~~ti 146 (211)
.+++.++++.+|+++..++ ++.+|||||||||+|||||+++|++|||||||+|||+.++..+++.|+++ +.||
T Consensus 102 ~~~~~v~~~l~~~gl~~~~~~-~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tv 180 (240)
T d2onka1 102 ERDRRVREMAEKLGIAHLLDR-KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTTC-CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHhcCcHhhhhC-ChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 2457889999999988775 88999999999999999999999999999999999999999999998764 6799
Q ss_pred EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 182 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~ 182 (211)
|+||||++++.++||++++|++|+++. .|+++++.
T Consensus 181 i~vtHd~~~~~~~adri~vm~~G~ii~-~G~~~el~ 215 (240)
T d2onka1 181 LHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp EEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEE-EecHHHHh
Confidence 999999999999999999999999975 68877653
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-41 Score=275.51 Aligned_cols=167 Identities=23% Similarity=0.277 Sum_probs=141.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC---------------CeEEEEEeCCCCCCCCCCCCHHHH
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDTPCEY 64 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~---------------~~~ig~v~q~~~~~l~~~~t~~e~ 64 (211)
.+..|..+.++ |-. ++|||++ ++|+++|++|+|..++ +.+|||+||++. +++.+|+.++
T Consensus 27 ~i~~Ge~~~ii-G~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~--l~~~~tv~en 103 (230)
T d1l2ta_ 27 NIKEGEFVSIM-GPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN--LIPLLTALEN 103 (230)
T ss_dssp EECTTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC--CCTTSCHHHH
T ss_pred EEcCCCEEEEE-CCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchh--hCcCccHHHH
Confidence 45678889999 554 5999999 9999999999998653 135999999975 8999999999
Q ss_pred HHhh---c---CCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q psy2681 65 LMKL---F---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 134 (211)
Q Consensus 65 ~~~~---~---~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~ 134 (211)
+... . ..+. +++.++++.++|.+...++++.+|||||||||+|||||+.+|++|||||||++||+.++..
T Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~ 183 (230)
T d1l2ta_ 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183 (230)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHH
Confidence 7631 1 2222 3466789999998643345789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceee
Q psy2681 135 LAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 173 (211)
Q Consensus 135 l~~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~ 173 (211)
++++|+++ +.|||+||||++++ ++|||+++|++|+++.
T Consensus 184 i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 184 IMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (230)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEE
Confidence 99999764 57999999999987 6999999999999975
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.3e-40 Score=272.71 Aligned_cols=175 Identities=25% Similarity=0.365 Sum_probs=148.9
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------------------CeEEEEEeCCCCCCC
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------------------RLRIGKFDQHSGEHL 55 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------------------~~~ig~v~q~~~~~l 55 (211)
.+..|+.+.++ |-. ++|||++ |+|+++|++|+|..++ ++++||+||++. +
T Consensus 24 ~i~~GEi~~ii-G~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~--l 100 (258)
T d1b0ua_ 24 QARAGDVISII-GSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN--L 100 (258)
T ss_dssp EECTTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC--C
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechh--h
Confidence 35678899999 664 5999999 9999999999997542 135999999975 8
Q ss_pred CCCCCHHHHHHhh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q psy2681 56 FPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 127 (211)
Q Consensus 56 ~~~~t~~e~~~~~----~~~~~----~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gL 127 (211)
++.+|+.+++... .+.+. +++.++++.+++.+....+++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 101 ~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gL 180 (258)
T d1b0ua_ 101 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180 (258)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred ccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccC
Confidence 9999999987532 23332 356789999999875444578999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHH
Q psy2681 128 DIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 181 (211)
Q Consensus 128 D~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~ 181 (211)
|+.++..++++|+++ +.|||+||||++++..+|||+++|++|+++. .|+++++
T Consensus 181 D~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~-~g~~~ev 236 (258)
T d1b0ua_ 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 236 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred CHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999998765 5799999999999999999999999999975 6777665
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.7e-40 Score=269.92 Aligned_cols=182 Identities=19% Similarity=0.257 Sum_probs=149.2
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHHh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLMK 67 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~~ 67 (211)
.+..|+.+.++ |-+ ++|||++ |+|+++|++|+|..++ +..++|+||++. +|+.+|+.+++..
T Consensus 28 ~i~~Gei~~li-GpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~--l~~~ltv~en~~~ 104 (240)
T d1ji0a_ 28 KVPRGQIVTLI-GANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR--IFPELTVYENLMM 104 (240)
T ss_dssp EEETTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC--CCTTSBHHHHHHG
T ss_pred EECCCCEEEEE-CCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccc--cCCcccHHHHHHH
Confidence 35678888999 665 5999999 9999999999998653 224899999875 8999999999763
Q ss_pred hc-C-C--C--HHHHHHHHHhC-CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q psy2681 68 LF-N-L--P--YEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 140 (211)
Q Consensus 68 ~~-~-~--~--~~~~~~~l~~~-gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 140 (211)
.. . . . .+...++++.+ ++.+..++ ++++|||||||||+|||||+++|++|||||||+||||.++..++++|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~ 183 (240)
T d1ji0a_ 105 GAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ-LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp GGTTCCCSSHHHHHHHHHHHHCHHHHTTTTS-BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhChHHHHhC-chhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHH
Confidence 22 1 1 1 22345566666 67766664 789999999999999999999999999999999999999999999997
Q ss_pred hc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH-HHHHHh
Q psy2681 141 NY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE-KLLTSL 189 (211)
Q Consensus 141 ~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~-~~~~~~ 189 (211)
++ +.|||++|||++++.++|||+++|++|+++. .|+++++.+ +.+.++
T Consensus 184 ~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~el~~~~~v~~~ 235 (240)
T d1ji0a_ 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELLDNEMVRKA 235 (240)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHHTCHHHHHH
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHhcCHHHHHH
Confidence 65 5799999999999999999999999999974 788887653 344443
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1e-39 Score=266.95 Aligned_cols=175 Identities=18% Similarity=0.252 Sum_probs=150.4
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC----------CeEEEEEeCCCCCCCCCCCCHHHHHHh---
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMK--- 67 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~----------~~~ig~v~q~~~~~l~~~~t~~e~~~~--- 67 (211)
+..|..+.++ |-+ ++|||++ ++|+++|++|+|..++ ++.+||+||.+. +++++|+.|++..
T Consensus 25 v~~Gei~glv-G~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~--~~~~ltv~e~l~~~~~ 101 (238)
T d1vpla_ 25 IEEGEIFGLI-GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAG 101 (238)
T ss_dssp ECTTCEEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCC--CCTTSBHHHHHHHHHH
T ss_pred EcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccc--cCCCccHHHHHHHHHH
Confidence 4567788888 665 5999999 9999999999998653 346999999865 7899999998743
Q ss_pred hcCCCHH----HHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy2681 68 LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 142 (211)
Q Consensus 68 ~~~~~~~----~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~- 142 (211)
.+..... .++.+++.+++.+..++ ++++|||||||||+|||||+++|++|||||||+||||.++..++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~ 180 (238)
T d1vpla_ 102 FYASSSSEIEEMVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180 (238)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCCGGGGGS-BGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHhCCCHHHHhh-hhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3344433 35678889999887765 79999999999999999999999999999999999999999999999765
Q ss_pred --CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 143 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 143 --~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|||++|||++++..+|||+++|++|+++. .|+++++.+
T Consensus 181 ~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~el~~ 222 (238)
T d1vpla_ 181 QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKE 222 (238)
T ss_dssp HTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHHH
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 6799999999999999999999999999974 788887754
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9e-40 Score=269.80 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=149.3
Q ss_pred ccccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------------CeEEEEEeCCCCCCCCCCCCHHHHHH
Q psy2681 2 CQMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------------RLRIGKFDQHSGEHLFPDDTPCEYLM 66 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------------~~~ig~v~q~~~~~l~~~~t~~e~~~ 66 (211)
..+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +..|+|+||++. +++.+|+.+|+.
T Consensus 25 ~~v~~Gei~~li-G~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~--~~~~ltv~enl~ 101 (254)
T d1g6ha_ 25 ISVNKGDVTLII-GPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ--PLKEMTVLENLL 101 (254)
T ss_dssp CEEETTCEEEEE-CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCG--GGGGSBHHHHHH
T ss_pred EEECCCCEEEEE-CCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccc--cCCCCeeeeeee
Confidence 356778889999 664 5999999 9999999999998653 124999999985 789999999985
Q ss_pred hhc--------------C---CC---HHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q psy2681 67 KLF--------------N---LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 126 (211)
Q Consensus 67 ~~~--------------~---~~---~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~g 126 (211)
... . .. .+++.++++.+++....++ ++++|||||||||+|||||+.+|++|||||||+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~g 180 (254)
T d1g6ha_ 102 IGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180 (254)
T ss_dssp GGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred ehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccC-chhhCCcHHHHHHHHHHHHHhCcCchhhcCCccc
Confidence 310 0 11 1346678999999887664 8999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 127 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 127 LD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
||+.++..+++.|+++ +.|||+||||++++.++|||+++|.+|+++. .|++++..+
T Consensus 181 LD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~-~g~~~e~~~ 239 (254)
T d1g6ha_ 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEEEIK 239 (254)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE-EecHHHHhh
Confidence 9999999999998765 6799999999999999999999999999975 677766544
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-36 Score=250.62 Aligned_cols=175 Identities=21% Similarity=0.252 Sum_probs=139.8
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ +++++|++|++. +| +.|+.+|+....
T Consensus 36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~tv~eni~~g~ 112 (251)
T d1jj7a_ 36 TLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQ--VF-GRSLQENIAYGL 112 (251)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC--CC-SSBHHHHHHCSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhcccccc--cc-Ccchhhhhhhhh
Confidence 467889999994443 4999999 9999999999998653 356999999985 55 469999986432
Q ss_pred --CCCHHHH---------HHHHHhC--CCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 70 --NLPYEKS---------RRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 70 --~~~~~~~---------~~~l~~~--gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
....... .+.++.+ |++....+ .+.+|||||||||+|||||+.+|+++||||||++||+.+...++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~ 191 (251)
T d1jj7a_ 113 TQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 191 (251)
T ss_dssp SSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCS-SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHhccccchhhHhc-cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHH
Confidence 1222222 1234444 44444443 56899999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~----~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|.++ +.|+|+||||++.+. .||+|++|++|+++. .|+++++.+
T Consensus 192 ~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~-~Gt~~eLl~ 240 (251)
T d1jj7a_ 192 QLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIRE-GGTHQQLME 240 (251)
T ss_dssp HHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999764 569999999999885 599999999999975 688888764
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.5e-37 Score=252.41 Aligned_cols=177 Identities=24% Similarity=0.287 Sum_probs=140.0
Q ss_pred ccccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 2 CQMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 2 ~~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
+++..|..+.+++--. ++|||++ ++|+++|++|+|..++ +.+|||+||++. +|+. |+.+|+...
T Consensus 23 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~-ti~eNi~~~ 99 (242)
T d1mv5a_ 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSA--IMAG-TIRENLTYG 99 (242)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSC--CCCE-EHHHHTTSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccc--cCCc-chhhheecc
Confidence 3567788999994443 5999999 9999999999998642 457999999975 5654 899998532
Q ss_pred c--CCCHHHHHHHHHhCCCCCcccc----------CCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 F--NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 ~--~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
. ........+.++..++...... .....|||||||||+|||||+.+|++|||||||++||+.+...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~ 179 (242)
T d1mv5a_ 100 LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179 (242)
T ss_dssp TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHH
T ss_pred cccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHH
Confidence 1 2344555555554443321111 134579999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|+++ +.|+|+|||+++.+. .||+|++|++|+++. .|+++++.+
T Consensus 180 ~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~-~G~~~eLl~ 226 (242)
T d1mv5a_ 180 KALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SGKHNELVA 226 (242)
T ss_dssp HHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CSCHHHHHH
T ss_pred HHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999876 679999999999886 599999999999974 789888754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-36 Score=249.40 Aligned_cols=175 Identities=22% Similarity=0.296 Sum_probs=139.9
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++--. ++|||++ ++|+++|++|+|..++ +++++|+||++. +| ..|+.+|+....
T Consensus 25 ~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~Ti~eNi~~~~ 101 (241)
T d2pmka1 25 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV--LL-NRSIIDNISLAN 101 (241)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC--CT-TSBHHHHHCTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccc--cC-CccccccccccC
Confidence 467889999994443 5999999 9999999999998754 346999999974 55 569999986432
Q ss_pred -CCCHHHHHHHHHhCCC-----------CCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+.+.+.++..++ +..... ....|||||||||+|||||+.+|++|||||||++||+.+...+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~ 180 (241)
T d2pmka1 102 PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180 (241)
T ss_dssp TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHH
Confidence 2344444444333322 222222 467899999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|+++ +.|+|+|||+++.+ +.||+|++|++|+++. .|+++++.+
T Consensus 181 ~l~~l~~~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~-~G~~~ell~ 226 (241)
T d2pmka1 181 NMHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKIVE-QGKHKELLS 226 (241)
T ss_dssp HHHHHHTTSEEEEECSSGGGG-TTSSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHhCCCEEEEEECCHHHH-HhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99876 56999999999988 4689999999999975 688877643
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-36 Score=249.03 Aligned_cols=175 Identities=22% Similarity=0.246 Sum_probs=141.3
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhh-
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL- 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~- 68 (211)
.+..|..+.+++--. ++|||++ ++|+++|++|+|..++ +..++|++|++. ++ ..|+.+++...
T Consensus 37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--l~-~~ti~~n~~~~~ 113 (253)
T d3b60a1 37 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH--LF-NDTVANNIAYAR 113 (253)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC--CC-SSBHHHHHHTTT
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccc--cC-CcchhhhhhhcC
Confidence 467889999995443 4999999 9999999999998653 346999999975 44 45778887533
Q ss_pred -cCCCHHHHHHHHHhCC-----------CCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q psy2681 69 -FNLPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 136 (211)
Q Consensus 69 -~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~ 136 (211)
...+.+++.++++..+ ++..... .+.+|||||||||+|||||+.+|++|||||||++||+.+...++
T Consensus 114 ~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~ 192 (253)
T d3b60a1 114 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 192 (253)
T ss_dssp TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHH
Confidence 2345565655554444 3333333 56789999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 137 EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 137 ~~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
+.|+++ +.|+|+||||++.+. .||+|++|++|+++. .|+++++.+
T Consensus 193 ~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~-~G~~~eLl~ 239 (253)
T d3b60a1 193 AALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 239 (253)
T ss_dssp HHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999876 679999999999885 699999999999975 688887654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5e-36 Score=247.02 Aligned_cols=175 Identities=26% Similarity=0.291 Sum_probs=143.4
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecC-----------CeEEEEEeCCCCCCCCCCCCHHHHHHhhc
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF 69 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~-----------~~~ig~v~q~~~~~l~~~~t~~e~~~~~~ 69 (211)
.+..|.++.+++--. ++|||++ ++|+++|++|+|..+. +..++|++|++. +| ..|+.+|+....
T Consensus 40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~--lf-~~Ti~eNi~~g~ 116 (255)
T d2hyda1 40 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI--LF-SDTVKENILLGR 116 (255)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC--CC-SSBHHHHHGGGC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeecccc--CC-CCCHHHHHhccC
Confidence 467889999994443 5999999 9999999999998653 357999999874 54 569999996433
Q ss_pred -CCCHHHHHHHHHhCCCCCc-----------cccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q psy2681 70 -NLPYEKSRRQLGMFGLPSY-----------AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 137 (211)
Q Consensus 70 -~~~~~~~~~~l~~~gl~~~-----------~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~ 137 (211)
....+++.++++..++.+. ... ...+||||||||++|||||+.+|+++|||||||+||+.+...+++
T Consensus 117 ~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~ 195 (255)
T d2hyda1 117 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 195 (255)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 3456667777777665321 112 346799999999999999999999999999999999999999999
Q ss_pred HHHhc--CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 138 AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 138 ~l~~~--~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
.|.++ +.|+|+|||+++.+. .||+|++|++|+++. .|+++++.+
T Consensus 196 ~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~-~G~~~eLl~ 241 (255)
T d2hyda1 196 ALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVE-TGTHRELIA 241 (255)
T ss_dssp HHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99876 569999999999875 689999999999975 688887654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-35 Score=238.08 Aligned_cols=182 Identities=20% Similarity=0.250 Sum_probs=146.4
Q ss_pred cccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecCC-----------eEEEEEeCCCCCCCCCCCCHHHHHHhh
Q psy2681 3 QMCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSPR-----------LRIGKFDQHSGEHLFPDDTPCEYLMKL 68 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~~-----------~~ig~v~q~~~~~l~~~~t~~e~~~~~ 68 (211)
.+..|..+.+| |-+ ++|||++ ++|+. |++|+|...+. ...+|++|... .....++++++...
T Consensus 21 ~I~~Gei~~ii-G~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~ 96 (231)
T d1l7vc_ 21 EVRAGEILHLV-GPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQT--PPFATPVWHYLTLH 96 (231)
T ss_dssp EEETTCEEECB-CCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCC--CCSSCBHHHHHHHH
T ss_pred EEcCCCEEEEE-CCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeecccc--CCccccHHHHhhhc
Confidence 35678888899 665 5999999 99965 78999986542 24789998764 34456777776532
Q ss_pred c--CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhc-------CCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy2681 69 F--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIESIDALAEAI 139 (211)
Q Consensus 69 ~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~-------~p~lllLDEPt~gLD~~~~~~l~~~l 139 (211)
. ....+.+.++++.+++.+..++ ++.+|||||||||+||||+++ +|++|||||||+|||+.++..+.++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i 175 (231)
T d1l7vc_ 97 QHDKTRTELLNDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 175 (231)
T ss_dssp CSCTTCHHHHHHHHHHTTCTTTTTS-BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhcCCHhHhCc-ChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 2 2235567889999999988775 789999999999999999997 77999999999999999999999998
Q ss_pred Hhc---CCeEEEEecChHHHHhhCCeEEEEeCCceeeecCChHHHH-HHHHHHhh
Q psy2681 140 KNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR-EKLLTSLG 190 (211)
Q Consensus 140 ~~~---~~tiiivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~-~~~~~~~~ 190 (211)
+++ +.|||+||||++++.++|||+++|++|+++. .|+.+++. ...+.++|
T Consensus 176 ~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~-~G~~~ev~~~~~l~~~y 229 (231)
T d1l7vc_ 176 SALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVLTPPNLAQAY 229 (231)
T ss_dssp HHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECC-CSBHHHHSCHHHHHHHH
T ss_pred HHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-ECCHHHHhCChHHHHhh
Confidence 765 6799999999999999999999999999974 78887763 33444443
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.1e-34 Score=240.60 Aligned_cols=173 Identities=21% Similarity=0.244 Sum_probs=136.2
Q ss_pred cccccCeeeeecCCC-Ccccccc-ccCcccCCcceEEecCCeEEEEEeCCCCCCCCCCCCHHHHHHhhcCCCHHHHHHHH
Q psy2681 3 QMCLKLRIAVLQGLR-NPLSFIK-PKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 80 (211)
Q Consensus 3 ~~~~~~~~~~i~~~~-~~sTLl~-i~G~~~p~~G~i~~~~~~~ig~v~q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~l 80 (211)
.+..|..+.+++--. ++|||++ |+|+++|++|+|..++ +++|++|++. +++ .|+.+|+............+++
T Consensus 58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~ 132 (281)
T d1r0wa_ 58 NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFSW--IMP-GTIKENIIFGVSYDEYRYKSVV 132 (281)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--CEEEECSSCC--CCS-EEHHHHHTTTSCCCHHHHHHHH
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--EEEEEecccc--ccC-ceeeccccccccccchHHHHHH
Confidence 466789999994443 5999999 9999999999998876 5899999875 554 5899998644334444444444
Q ss_pred HhCCC-------CC----ccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc--CCeE
Q psy2681 81 GMFGL-------PS----YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY--QGGV 146 (211)
Q Consensus 81 ~~~gl-------~~----~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~--~~ti 146 (211)
+..++ .. ... +...+|||||||||+|||||+++|++|||||||++||+.+...+++.+ ... +.|+
T Consensus 133 ~~~~~~~~i~~l~~~~~~~~~-~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tv 211 (281)
T d1r0wa_ 133 KACQLQQDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 211 (281)
T ss_dssp HHTTCHHHHTTSTTGGGCEEC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEE
T ss_pred HHHHhHHHHHhchhhhhhhhh-hhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEE
Confidence 43332 21 122 245679999999999999999999999999999999999999998764 333 5699
Q ss_pred EEEecChHHHHhhCCeEEEEeCCceeeecCChHHHHH
Q psy2681 147 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 183 (211)
Q Consensus 147 iivsHd~~~~~~~~~~v~~l~~g~i~~~~g~~~~~~~ 183 (211)
|+|||+++.+ +.||+|++|++|+++. .|+++++..
T Consensus 212 i~itH~~~~l-~~aDrI~vl~~G~i~~-~Gt~~eL~~ 246 (281)
T d1r0wa_ 212 ILVTSKMEHL-RKADKILILHQGSSYF-YGTFSELQS 246 (281)
T ss_dssp EEECSCHHHH-HTCSEEEEEETTEEEE-EECHHHHHH
T ss_pred EEEechHHHH-HhCCEEEEEECCEEEE-ECCHHHHhc
Confidence 9999999887 5799999999999975 688888754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=3e-31 Score=211.28 Aligned_cols=155 Identities=20% Similarity=0.189 Sum_probs=123.9
Q ss_pred ccccCeeeeecCCC--Ccccccc-ccCcccCCcceEEecC------CeEEEEEeCCCCCCCCCCCCHHHHHHh---hc--
Q psy2681 4 MCLKLRIAVLQGLR--NPLSFIK-PKGELTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LF-- 69 (211)
Q Consensus 4 ~~~~~~~~~i~~~~--~~sTLl~-i~G~~~p~~G~i~~~~------~~~ig~v~q~~~~~l~~~~t~~e~~~~---~~-- 69 (211)
+..|..+.++ |-+ ++|||++ |+|+++|++|+|..++ +.+++|+||+.. ++..+++.+++.. .+
T Consensus 24 i~~Gei~~l~-G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~--~~~~~t~~~~l~~~~~~~~~ 100 (200)
T d1sgwa_ 24 IEKGNVVNFH-GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGV 100 (200)
T ss_dssp EETTCCEEEE-CCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC--CCTTSBHHHHHHHHHHHTTC
T ss_pred EcCCCEEEEE-CCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeeccc--CCCCcCHHHHHHHHHHhcCC
Confidence 4567888898 554 5999999 9999999999998765 446999999864 6678898888752 23
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CC-e
Q psy2681 70 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QG-G 145 (211)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~-t 145 (211)
.....++.+.++.+++.+. . +++.+|||||||||+||||++.+|+++||||||+|||+.++..+++.|.+. ++ +
T Consensus 101 ~~~~~~~~~~l~~~~~~~~-~-~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ 178 (200)
T d1sgwa_ 101 KVNKNEIMDALESVEVLDL-K-KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178 (200)
T ss_dssp CCCHHHHHHHHHHTTCCCT-T-SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE
T ss_pred ccCHHHHHHHHHHcCCccc-c-cccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEE
Confidence 3456677788899888653 3 368999999999999999999999999999999999999999999888765 23 4
Q ss_pred EEEEecChHHHHhhCCeEEEEe
Q psy2681 146 VILVSHDERLIRETDCELWALE 167 (211)
Q Consensus 146 iiivsHd~~~~~~~~~~v~~l~ 167 (211)
||.++|++ .+||.+.+|+
T Consensus 179 ii~~~~~l----~~~D~~~~l~ 196 (200)
T d1sgwa_ 179 IISSREEL----SYCDVNENLH 196 (200)
T ss_dssp EEEESSCC----TTSSEEEEGG
T ss_pred EEEEechh----hhcchhhhee
Confidence 55555554 4688887764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=8.3e-11 Score=99.80 Aligned_cols=73 Identities=27% Similarity=0.374 Sum_probs=60.3
Q ss_pred CCCCCChHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CCeEEEEecChHHHHhhCCeEEE
Q psy2681 93 PIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWA 165 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iaral----~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~---~~tiiivsHd~~~~~~~~~~v~~ 165 (211)
++..||||||.++++|..+ ..++++++||||+++||+..+..+.++|.+. +.-+|++||+...+. .+|+.+.
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~~ 407 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVG 407 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEEE
Confidence 5577899999998776544 4677899999999999999999999999765 235999999999875 5688765
Q ss_pred E
Q psy2681 166 L 166 (211)
Q Consensus 166 l 166 (211)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.74 E-value=1.3e-09 Score=81.94 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEeCCCCC--CCHHHHHHHHHHHHhcCCeEEEEecChHHHHhhCCeEEEEeCCcee
Q psy2681 95 RDLSGGQKARVALAELTLNNPDILILDEPTNN--LDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIR 172 (211)
Q Consensus 95 ~~LSgG~kqRv~iaral~~~p~lllLDEPt~g--LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~~~v~~l~~g~i~ 172 (211)
..+|+|+++|.++++++..+|+++++|||... .+......+.+.+++.+.++|+++|+... ...+++++.+.+|+++
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEE
T ss_pred hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEEE
Confidence 46899999999999999999999999997544 35566677777777778899999999754 3466788888888886
Q ss_pred eec-CChHHHHHHHHHHh
Q psy2681 173 KFN-GDFDDYREKLLTSL 189 (211)
Q Consensus 173 ~~~-g~~~~~~~~~~~~~ 189 (211)
... .+.+.+.++.++.+
T Consensus 159 ~v~~~nrd~~~~~i~~~l 176 (178)
T d1ye8a1 159 ELTPENRDVILEDILSLL 176 (178)
T ss_dssp ECCTTTTTTHHHHHHHHS
T ss_pred EECCccHHHHHHHHHHHH
Confidence 542 34455555555443
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=9.6e-08 Score=77.57 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=62.2
Q ss_pred CCCCCChHHHHHHHHHHH----HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChHHHHhhCCeEEE-
Q psy2681 93 PIRDLSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA- 165 (211)
Q Consensus 93 ~~~~LSgG~kqRv~iara----l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~~~v~~- 165 (211)
.+..+|+|+|+.+.++.. ...+|.++++|||-++|+|.....+.+.|++. +.-||++||.+.++.. +|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~-~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA-ADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG-CSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh-cccEEEE
Confidence 356899999998877665 35678999999999999999999999999876 3579999999998865 477754
Q ss_pred -EeCC
Q psy2681 166 -LEKK 169 (211)
Q Consensus 166 -l~~g 169 (211)
+++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 4444
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.24 E-value=0.057 Score=41.23 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH----HHHHHHhcCCeEEEEecChHHHH
Q psy2681 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDA----LAEAIKNYQGGVILVSHDERLIR 157 (211)
Q Consensus 100 G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~----l~~~l~~~~~tiiivsHd~~~~~ 157 (211)
.|-+++.-+.-.+.+..++|+||+..|=++..... +.+.|.+.+..++++||..+...
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 44455555555567888999999999999976554 44445555778999999987765
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.099 Score=40.05 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH----HHHhc-CCeEEEEecChHHH
Q psy2681 100 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE----AIKNY-QGGVILVSHDERLI 156 (211)
Q Consensus 100 G~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~----~l~~~-~~tiiivsHd~~~~ 156 (211)
.+-+|+.-+.--+.+..++|+||+..|=++.....+.. .+... +..++++||..+..
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 34444444444577778999999999999877655533 23222 34788888876543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=82.22 E-value=2.8 Score=28.86 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-CCeEEEEecC
Q psy2681 97 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGGVILVSHD 152 (211)
Q Consensus 97 LSgG~kqRv~iaral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~tiiivsHd 152 (211)
.+.+....-.+..++-..+..+|+.-+...+++. .+.+... +..++.+||.
T Consensus 112 ~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~-----~~~i~~~~~~~i~~v~~~ 163 (178)
T d1ye8a1 112 ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL-----VKEIRRLPGAVLIELTPE 163 (178)
T ss_dssp GGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHH-----HHHHHTCTTCEEEECCTT
T ss_pred chhhHHHHHHHHHHhccCCCEEEEEEccHHHHHh-----hceEEEEeCCEEEEECCc
Confidence 4445666778888888888999999999888753 3444444 5688888885
|