Psyllid ID: psy2691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFEALDDEDLEGEGRGRRTHAGGDDGDEEGGDEDGGWDVGDDLVE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHccHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESnlrtadpnatlptvhpeaqllrppapvaeaetnwplltvSKSFFealddedlegegrgrrthaggddgdeeggdedggwdvgddlve
Flexible Loop (DISEMBL)
MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFEALDdedlegegrgrrthaggddgdeeggdedggwdvgddlve
Low Complexity Region (SEG)
MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGlseeaaelesNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFEAlddedlegegrgrrTHAggddgdeeggdedggwdvgddLVE
Disordered region (IsUnstruct)
******IVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHG*****************************************TNWPLLTVSKSFFE******************************************
Disordered Region (DISOPRED)
**GNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNL******************LRPPAPVAEAETNWPLLTVSKSFFEA*****************GGDDGDEEGGDEDGGWDVGDDLV*
Disordered Region (DISEMBL)
MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFEALDDEDLE**********************DGGWDVGDDLVE
Disordered Region (DISPRO)
*QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFEALDDEDL***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFEALDDEDLEGEGRGRRTHAGGDDGDEEGGDEDGGWDVGDDLVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q27954	1224	Coatomer subunit alpha OS	yes	N/A	0.972	0.143	0.570	5e-57
P53621	1224	Coatomer subunit alpha OS	yes	N/A	0.972	0.143	0.570	5e-57
Q8CIE6	1224	Coatomer subunit alpha OS	yes	N/A	0.972	0.143	0.555	3e-55
Q94A40	1216	Coatomer subunit alpha-1	yes	N/A	0.795	0.118	0.474	4e-32
Q9SJT9	1218	Coatomer subunit alpha-2	no	N/A	0.790	0.117	0.490	2e-31
Q55FR9	1221	Coatomer subunit alpha OS	yes	N/A	0.878	0.130	0.459	2e-31
Q0J3D9	1218	Coatomer subunit alpha-3	yes	N/A	0.933	0.138	0.424	9e-30
Q9AUR8	1218	Coatomer subunit alpha-1	yes	N/A	0.933	0.138	0.419	7e-29
Q9AUR7	1218	Coatomer subunit alpha-2	yes	N/A	0.933	0.138	0.414	1e-28
Q96WV5	1207	Putative coatomer subunit	yes	N/A	0.784	0.117	0.445	7e-26

>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1

 Score =  220 bits (560), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 860 EATEGLGDDALGKGQEEGGGWDVEEDL 886

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.
Bos taurus (taxid: 9913)

>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2

 Score =  220 bits (560), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 860 EATEGLGDDALGKGQEEGGGWDVEEDL 886

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.

Homo sapiens (taxid: 9606)

>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2

 Score =  214 bits (544), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 139/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYL+AATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLSAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRGRRTHAG------- 158
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 159 ------GDDGDEEGGDEDGGWDVGDDL 179
                 G+D   +G +E GGWDV +DL
Sbjct: 860 EAPEGLGEDVLGKGQEEGGGWDVEEDL 886

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.

Mus musculus (taxid: 10090)

>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2

 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 102/158 (64%), Gaps = 14/158 (8%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN  IVE  YQ+TKNF++L+FLYLITGNL+KL K+MKIAE++ ++ GQ+  AL LG+V 
Sbjct: 686 QGNSGIVEFAYQQTKNFERLSFLYLITGNLDKLSKLMKIAEVKNNVMGQFHNALYLGDVK 745

Query: 62  ERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPV 121
           ER+KIL++ G   LAY+TA+ HGL++ A  L + L   D   +LP       LL PP P+
Sbjct: 746 ERVKILENAGHLPLAYITASVHGLNDIAERLATEL--GDNVPSLPE-GKTPSLLMPPTPI 802

Query: 122 AEAETNWPLLTVSKSFFE----------ALDDEDLEGE 149
                +WPLL V K  FE           +D+ED+EG+
Sbjct: 803 M-CGGDWPLLRVMKGIFEGGLESADRGGTVDEEDVEGD 839

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 98/151 (64%), Gaps = 8/151 (5%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN +IVE  YQ+TKNF++L+FLYLITGNL+KL K+MKIAE++ ++ GQ+  AL LG+V 
Sbjct: 686 QGNSRIVEFAYQQTKNFERLSFLYLITGNLDKLSKLMKIAEVKNNVMGQFHNALYLGDVK 745

Query: 62  ERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPV 121
           ER+KIL++ G   LAY+TA+ HGL++ A  L   L   D   +LP       LL PP+P+
Sbjct: 746 ERVKILENAGHLPLAYITASVHGLTDIAERLAIEL--GDNVPSLPE-GKTPSLLMPPSPI 802

Query: 122 AEAETNWPLLTVSKSFFEALDDEDLEGEGRG 152
                +WPLL V K  FE      LE   RG
Sbjct: 803 M-CGGDWPLLRVMKGIFEG----GLESANRG 828

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 104/172 (60%), Gaps = 13/172 (7%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN+Q+VEM Y RT  FD+L+FLYL+ GNL  LKKM  I+    DI  ++  +L LG+V 
Sbjct: 676 QGNYQVVEMAYSRTSEFDRLSFLYLLVGNLSTLKKM--ISYESSDIMSRFHFSLYLGDVE 733

Query: 62  ERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPV 121
           ERIKIL+  G   LAY+TA+ HGL+E+A  +  NL T+D  + LP +  ++ LL PP+P+
Sbjct: 734 ERIKILQEAGLHQLAYITASIHGLTEKAESI-GNLITSDGKSQLPQLPKQSYLLVPPSPI 792

Query: 122 --AEAETNWPLLTVSKSFFEALDDEDLEGEGR-GRRTHAGGDDGDEEGGDED 170
                E NWPLLT +KS        D+ GE R G         GD E  DED
Sbjct: 793 NCNPNELNWPLLTTTKSV------SDVMGENRFGVEQSTSTPTGDWE-SDED 837

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1

 Score =  129 bits (324), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 115/205 (56%), Gaps = 36/205 (17%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN  IVE  YQRTKNF++LAFLYLITG ++K+  M KIA    ++ GQ+  AL LG+  
Sbjct: 686 QGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGFMCKIAGQNNNLMGQFHNALYLGDAM 745

Query: 62  ERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQ---LLRPP 118
           +R++IL++ GQ  LAY+TAATHGL+E A  L + L        +P++ PE +   LL PP
Sbjct: 746 KRVEILENAGQLPLAYITAATHGLTEIADRLAAEL-----GENIPSL-PEGKTRSLLIPP 799

Query: 119 APVAEAETNWPLLTVSKSFFE-ALD-------------------DEDLEGEGRGRRTHAG 158
           AP+  A  +WPLL V +  FE  LD                   DEDL+          G
Sbjct: 800 APLT-ASGDWPLLRVMRGIFEGGLDATGKAELEEDDEAAGADWGDEDLDMVDASEAMANG 858

Query: 159 GDDGDEEGGD------EDGGWDVGD 177
           GD  D E G+      E+GGWD+ D
Sbjct: 859 GDGFDAEEGEANEEDGEEGGWDLED 883

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1

 Score =  126 bits (317), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 113/205 (55%), Gaps = 36/205 (17%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN  IVE  YQRTKNF++LAFLYLITG ++K+  M KIA    ++ GQ+  AL LG+  
Sbjct: 686 QGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGFMCKIAGQNNNLMGQFHNALYLGDAL 745

Query: 62  ERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQ---LLRPP 118
           +R++IL++ GQ  LAY+TA THGL+E A  L + L        +P++ PE +   LL PP
Sbjct: 746 KRVEILENAGQLPLAYITATTHGLTEIADRLAAEL-----GENIPSL-PEGKARSLLIPP 799

Query: 119 APVAEAETNWPLLTVSKSFFE-ALD-------------------DEDLEGEGRGRRTHAG 158
           AP+  A  +WPLL V    FE  LD                   DEDL+          G
Sbjct: 800 APLT-ASGDWPLLRVMHGIFEGGLDATGKAELEEDDEAAGADWGDEDLDMVDASEAMANG 858

Query: 159 GDDGDEEGGD------EDGGWDVGD 177
           GD  D E G+      E+GGWD+ D
Sbjct: 859 GDGFDAEEGEANEEDGEEGGWDLED 883

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 112/205 (54%), Gaps = 36/205 (17%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN  IVE  YQRTKNF++LAFLYLITG ++K+  M KIA    ++ GQ+  AL LG+  
Sbjct: 686 QGNVGIVEYAYQRTKNFERLAFLYLITGYMDKVGFMCKIAGQNNNLMGQFHNALYLGDAM 745

Query: 62  ERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQ---LLRPP 118
           +R++IL++ GQ  LAY+TA THGL+E A  L + L        +P++ PE +   LL PP
Sbjct: 746 KRVEILENAGQLPLAYITATTHGLTEIADRLAAEL-----GENIPSL-PEGKARSLLIPP 799

Query: 119 APVAEAETNWPLLTVSKSFFEALDDEDLEGEGRGRRTHAGGDDGDE------------EG 166
           AP+  A  +WPLL V +  FE   D   + E       AG D GDE             G
Sbjct: 800 APLT-ASGDWPLLRVMRGIFEGGLDATGKAELEEDDEAAGADWGDEGLDIVDASEAMANG 858

Query: 167 GD--------------EDGGWDVGD 177
           GD              E+GGWD+ D
Sbjct: 859 GDGFDAEEGEANEEDGEEGGWDLED 883

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1

 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 4/146 (2%)

Query: 3   GNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGE 62
           GNH+I E+ +Q+ + F+KL+FLYLITGN EKL+KM  IAE R D    +Q +L L EV  
Sbjct: 692 GNHKIAEITFQKLRYFEKLSFLYLITGNAEKLQKMAIIAEKRNDTLSLFQNSLYLNEVES 751

Query: 63  RIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVA 122
           RI IL+  G   +AYLTA ++GL E+A ++ S+    +    LP++         P PV 
Sbjct: 752 RINILEQAGMYPIAYLTAKSNGLEEKAQQILSHCNKTEEEIKLPSL---GSAFTTPVPVN 808

Query: 123 EAET-NWPLLTVSKSFFEALDDEDLE 147
           E  T NWPLL  S S FE    E +E
Sbjct: 809 ETYTHNWPLLDTSHSTFEKSLQERME 834

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
321472821	1224	hypothetical protein DAPPUDRAFT_301644 [	0.988	0.146	0.576	3e-57
197100845	928	coatomer subunit alpha [Pongo abelii] gi	0.972	0.189	0.570	1e-55
403293999	1233	PREDICTED: coatomer subunit alpha isofor	0.972	0.142	0.570	2e-55
403293997	1224	PREDICTED: coatomer subunit alpha isofor	0.972	0.143	0.570	2e-55
291397624	1224	PREDICTED: coatomer protein complex, sub	0.972	0.143	0.570	2e-55
291397626	1233	PREDICTED: coatomer protein complex, sub	0.972	0.142	0.570	2e-55
2494888	1224	RecName: Full=Coatomer subunit alpha; Al	0.972	0.143	0.570	2e-55
157785569	1224	coatomer subunit alpha [Bos taurus] gi|1	0.972	0.143	0.570	2e-55
168278389	1224	coatomer subunit alpha [synthetic constr	0.972	0.143	0.570	2e-55
410266558	1224	coatomer protein complex, subunit alpha	0.972	0.143	0.570	2e-55

>gi|321472821|gb|EFX83790.1| hypothetical protein DAPPUDRAFT_301644 [Daphnia pulex]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/203 (57%), Positives = 147/203 (72%), Gaps = 24/203 (11%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQ+VEMCYQRTKNF+KLAFLYLITGNL+KL+KMMKIAEIR+D SGQYQ+ALLLG++
Sbjct: 684 LQGNHQVVEMCYQRTKNFNKLAFLYLITGNLDKLRKMMKIAEIRKDTSGQYQSALLLGDM 743

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAP 120
            ER+K+L++CGQTSLA+LTAATHGL+EEA  L+  L  A     +PTV+P A  L+PP P
Sbjct: 744 QERVKVLRNCGQTSLAFLTAATHGLNEEAELLQQQLEAA--GQPVPTVNPSAVFLQPPPP 801

Query: 121 VAEAETNWPLLTVSKSFFE------------ALDDEDLEGEGRGRRTHAG---------- 158
           +A+AE+NWPLLTVSK FF+            A+  E+  GE  G    A           
Sbjct: 802 IAQAESNWPLLTVSKGFFDGAMAARTIASGSAVATEEDAGEPDGWGDDADLGLDDEDKPV 861

Query: 159 GDDGDEEGGDEDGGWDVGDDLVE 181
           G  G+ E GDE+GGW+VGD+ +E
Sbjct: 862 GSAGNAESGDEEGGWEVGDEDLE 884

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197100845|ref|NP_001126364.1| coatomer subunit alpha [Pongo abelii] gi|55731220|emb|CAH92324.1| hypothetical protein [Pongo abelii]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 387 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 446

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 447 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 503

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 504 PIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 563

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 564 EATEGLGDDALGKGQEEGGGWDVEEDL 590

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403293999|ref|XP_003937995.1| PREDICTED: coatomer subunit alpha isoform 2 [Saimiri boliviensis boliviensis]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 692 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 751

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 752 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 808

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 809 PIMPLDTNWPLLTVSKGFFEGTIAGKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 868

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 869 EATEGLGDDAIGKGQEEGGGWDVEEDL 895

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403293997|ref|XP_003937994.1| PREDICTED: coatomer subunit alpha isoform 1 [Saimiri boliviensis boliviensis]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGTIAGKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 860 EATEGLGDDAIGKGQEEGGGWDVEEDL 886

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291397624|ref|XP_002715282.1| PREDICTED: coatomer protein complex, subunit alpha isoform 1 [Oryctolagus cuniculus]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 860 EATEGLGDDALGKGQEEGGGWDVEEDL 886

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291397626|ref|XP_002715283.1| PREDICTED: coatomer protein complex, subunit alpha isoform 2 [Oryctolagus cuniculus]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 692 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 751

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 752 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 808

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 809 PIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 868

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 869 EATEGLGDDALGKGQEEGGGWDVEEDL 895

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|2494888|sp|Q27954.1|COPA_BOVIN RecName: Full=Coatomer subunit alpha; AltName: Full=Alpha-coat protein; Short=Alpha-COP; AltName: Full=HEP-COP; Short=HEPCOP; Contains: RecName: Full=Xenin; AltName: Full=Xenopsin-related peptide; Contains: RecName: Full=Proxenin gi|1237029|emb|CAA65543.1| alpha-cop protein [Bos primigenius]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 860 EATEGLGDDALGKGQEEGGGWDVEEDL 886

Source: Bos primigenius

Species: Bos primigenius

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157785569|ref|NP_001099115.1| coatomer subunit alpha [Bos taurus] gi|157279392|gb|AAI53252.1| COPA protein [Bos taurus] gi|296489829|tpg|DAA31942.1| TPA: coatomer subunit alpha [Bos taurus]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 860 EATEGLGDDALGKGQEEGGGWDVEEDL 886

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|168278389|dbj|BAG11074.1| coatomer subunit alpha [synthetic construct]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 860 EATEGLGDDALGKGQEEGGGWDVEEDL 886

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|410266558|gb|JAA21245.1| coatomer protein complex, subunit alpha [Pan troglodytes] gi|410266560|gb|JAA21246.1| coatomer protein complex, subunit alpha [Pan troglodytes] gi|410266564|gb|JAA21248.1| coatomer protein complex, subunit alpha [Pan troglodytes]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 31/207 (14%)

Query: 1   MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
           +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct: 683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query: 61  GERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNA-TLPTVHPEAQLLRPPA 119
            ER++ILK+CGQ SLAYLTAATHGL EEA  L+    T DP   T+P + P A+LL+PPA
Sbjct: 743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLKE---TFDPEKETIPDIDPNAKLLQPPA 799

Query: 120 PVAEAETNWPLLTVSKSFFEA--------------LDDEDLEGEGRG------------- 152
           P+   +TNWPLLTVSK FFE               +D + +  EG G             
Sbjct: 800 PIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFV 859

Query: 153 RRTHAGGDDGDEEGGDEDGGWDVGDDL 179
             T   GDD   +G +E GGWDV +DL
Sbjct: 860 EATEGLGDDALGKGQEEGGGWDVEEDL 886

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
RGD|1310525	568	Copa "coatomer protein complex	0.751	0.239	0.685	3.3e-47
UNIPROTKB|F1RJX8	1224	COPA "Uncharacterized protein"	0.745	0.110	0.695	2.6e-46
FB|FBgn0025725	1234	alphaCop "alpha-coatomer prote	0.756	0.111	0.690	2.7e-46
UNIPROTKB|F1PU93	1214	COPA "Coatomer subunit alpha"	0.751	0.112	0.685	5.4e-46
UNIPROTKB|Q27954	1224	COPA "Coatomer subunit alpha"	0.751	0.111	0.685	5.5e-46
UNIPROTKB|P53621	1224	COPA "Coatomer subunit alpha"	0.751	0.111	0.685	5.5e-46
UNIPROTKB|G3V6T1	1224	Copa "Protein Copa" [Rattus no	0.751	0.111	0.685	5.5e-46
MGI|MGI:1334462	1224	Copa "coatomer protein complex	0.751	0.111	0.678	1.5e-45
ZFIN|ZDB-GENE-020905-2	1226	copa "coatomer protein complex	0.751	0.110	0.657	4.3e-43
WB|WBGene00022119	1232	Y71F9AL.17 [Caenorhabditis ele	0.762	0.112	0.557	3e-36

RGD|1310525 Copa "coatomer protein complex subunit alpha" [Rattus norvegicus (taxid:10116)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 96/140 (68%), Positives = 111/140 (79%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct:    27 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 86

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNA-TLPTVHPEAQLLRPPA 119
              ER++ILK+CGQ SLAYLTAATHG             T DP   T+P + P A+LL+PPA
Sbjct:    87 SERVRILKNCGQKSLAYLTAATHGLDEEAESLK---ETFDPEKETIPDIDPNAKLLQPPA 143

Query:   120 PVAEAETNWPLLTVSKSFFE 139
             P+   +TNWPLLTVSK FFE
Sbjct:   144 PIMPLDTNWPLLTVSKGFFE 163

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030157 "pancreatic juice secretion" evidence=ISO

UNIPROTKB|F1RJX8 COPA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 497 (180.0 bits), Expect = 2.6e-46, P = 2.6e-46
 Identities = 98/141 (69%), Positives = 114/141 (80%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct:   683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLR-TADPNA-TLPTVHPEAQLLRPP 118
              ER++ILK+CGQ SLAYLTAATHG          NL+ T DP   T+P + P A+LL+PP
Sbjct:   743 SERVRILKNCGQKSLAYLTAATHGLDEEAE----NLKETFDPEKETIPDIDPNAKLLQPP 798

Query:   119 APVAEAETNWPLLTVSKSFFE 139
             AP+   +TNWPLLTVSK FFE
Sbjct:   799 APIMPLDTNWPLLTVSKGFFE 819

GO:0030157 "pancreatic juice secretion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

FB|FBgn0025725 alphaCop "alpha-coatomer protein" [Drosophila melanogaster (taxid:7227)]

 Score = 497 (180.0 bits), Expect = 2.7e-46, P = 2.7e-46
 Identities = 96/139 (69%), Positives = 113/139 (81%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQ+VEMCYQRTKNFDKL+FLYLITGNLEKLKKM KIAEIR+D+S QYQ ALLLG+V
Sbjct:   682 LQGNHQVVEMCYQRTKNFDKLSFLYLITGNLEKLKKMNKIAEIRKDVSAQYQGALLLGDV 741

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNATLPTVHPEAQLLRPPAP 120
              ER+ ILK+CGQ SLAYLTAATHG          ++ T+  N+ LP V+P AQLL+PP P
Sbjct:   742 KERVNILKNCGQLSLAYLTAATHGFDELTESLGESI-TSQGNS-LPEVNPNAQLLQPPVP 799

Query:   121 VAEAETNWPLLTVSKSFFE 139
             + + ETNWPLL+VSK FFE
Sbjct:   800 IQQLETNWPLLSVSKGFFE 818

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS;NAS

GO:0030126 "COPI vesicle coat" evidence=ISS;NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|F1PU93 COPA "Coatomer subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 494 (179.0 bits), Expect = 5.4e-46, P = 5.4e-46
 Identities = 96/140 (68%), Positives = 111/140 (79%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct:   673 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 732

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNA-TLPTVHPEAQLLRPPA 119
              ER++ILK+CGQ SLAYLTAATHG             T DP   T+P + P A+LL+PPA
Sbjct:   733 SERVRILKNCGQKSLAYLTAATHGLDEEAESLK---ETFDPEKETIPDIDPNAKLLQPPA 789

Query:   120 PVAEAETNWPLLTVSKSFFE 139
             P+   +TNWPLLTVSK FFE
Sbjct:   790 PIMPLDTNWPLLTVSKGFFE 809

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q27954 COPA "Coatomer subunit alpha" [Bos taurus (taxid:9913)]

 Score = 494 (179.0 bits), Expect = 5.5e-46, P = 5.5e-46
 Identities = 96/140 (68%), Positives = 111/140 (79%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct:   683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNA-TLPTVHPEAQLLRPPA 119
              ER++ILK+CGQ SLAYLTAATHG             T DP   T+P + P A+LL+PPA
Sbjct:   743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLK---ETFDPEKETIPDIDPNAKLLQPPA 799

Query:   120 PVAEAETNWPLLTVSKSFFE 139
             P+   +TNWPLLTVSK FFE
Sbjct:   800 PIMPLDTNWPLLTVSKGFFE 819

GO:0005515 "protein binding" evidence=IPI

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0030157 "pancreatic juice secretion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P53621 COPA "Coatomer subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 494 (179.0 bits), Expect = 5.5e-46, P = 5.5e-46
 Identities = 96/140 (68%), Positives = 111/140 (79%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct:   683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNA-TLPTVHPEAQLLRPPA 119
              ER++ILK+CGQ SLAYLTAATHG             T DP   T+P + P A+LL+PPA
Sbjct:   743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLK---ETFDPEKETIPDIDPNAKLLQPPA 799

Query:   120 PVAEAETNWPLLTVSKSFFE 139
             P+   +TNWPLLTVSK FFE
Sbjct:   800 PIMPLDTNWPLLTVSKGFFE 819

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS;IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030157 "pancreatic juice secretion" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

UNIPROTKB|G3V6T1 Copa "Protein Copa" [Rattus norvegicus (taxid:10116)]

 Score = 494 (179.0 bits), Expect = 5.5e-46, P = 5.5e-46
 Identities = 96/140 (68%), Positives = 111/140 (79%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct:   683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNA-TLPTVHPEAQLLRPPA 119
              ER++ILK+CGQ SLAYLTAATHG             T DP   T+P + P A+LL+PPA
Sbjct:   743 SERVRILKNCGQKSLAYLTAATHGLDEEAESLK---ETFDPEKETIPDIDPNAKLLQPPA 799

Query:   120 PVAEAETNWPLLTVSKSFFE 139
             P+   +TNWPLLTVSK FFE
Sbjct:   800 PIMPLDTNWPLLTVSKGFFE 819

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0030157 "pancreatic juice secretion" evidence=IEA

MGI|MGI:1334462 Copa "coatomer protein complex subunit alpha" [Mus musculus (taxid:10090)]

 Score = 490 (177.5 bits), Expect = 1.5e-45, P = 1.5e-45
 Identities = 95/140 (67%), Positives = 111/140 (79%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQIVEMCYQRTKNFDKL+FLYLITGNLEKL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct:   683 LQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDV 742

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNA-TLPTVHPEAQLLRPPA 119
              ER++ILK+CGQ SLAYL+AATHG             T DP   T+P + P A+LL+PPA
Sbjct:   743 SERVRILKNCGQKSLAYLSAATHGLDEEAESLK---ETFDPEKETIPDIDPNAKLLQPPA 799

Query:   120 PVAEAETNWPLLTVSKSFFE 139
             P+   +TNWPLLTVSK FFE
Sbjct:   800 PIMPLDTNWPLLTVSKGFFE 819

GO:0005179 "hormone activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030157 "pancreatic juice secretion" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

ZFIN|ZDB-GENE-020905-2 copa "coatomer protein complex, subunit alpha" [Danio rerio (taxid:7955)]

 Score = 467 (169.5 bits), Expect = 4.3e-43, P = 4.3e-43
 Identities = 92/140 (65%), Positives = 106/140 (75%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QG+HQ+VEMCYQRTKNFDKL FLYLITGNL KL+KMMKIAEIR+D+SG YQ AL LG+V
Sbjct:   685 LQGHHQVVEMCYQRTKNFDKLTFLYLITGNLTKLRKMMKIAEIRKDMSGHYQGALYLGDV 744

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTAD-PNATLPTVHPEAQLLRPPA 119
              ER++ILK+CGQ SLAYLTAATHG             T D     +P V P AQLL+PP 
Sbjct:   745 SERVRILKNCGQKSLAYLTAATHGMDEEAEALK---ETFDLEKEMVPEVDPNAQLLQPPP 801

Query:   120 PVAEAETNWPLLTVSKSFFE 139
             P+   +TNWPLLTVSK FFE
Sbjct:   802 PINPLDTNWPLLTVSKGFFE 821

GO:0030117 "membrane coat" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030903 "notochord development" evidence=IMP

WB|WBGene00022119 Y71F9AL.17 [Caenorhabditis elegans (taxid:6239)]

 Score = 403 (146.9 bits), Expect = 3.0e-36, P = 3.0e-36
 Identities = 78/140 (55%), Positives = 96/140 (68%)

Query:     1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEV 60
             +QGNHQIVEM YQRTKNF+KL+FLY +TGN +KL KMMKIA+ R D  G +Q AL  G+V
Sbjct:   687 LQGNHQIVEMSYQRTKNFEKLSFLYFVTGNTDKLVKMMKIAQARNDAHGHFQTALYTGDV 746

Query:    61 GERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNATLPTVHPEAQLLRPPAP 120
              ER+K+L++CGQTSLAYL AATHG           L +      +P V P A+LL PP P
Sbjct:   747 EERVKVLRNCGQTSLAYLAAATHGYSAEAEELKAELESRQQ--PIPPVDPNARLLVPPPP 804

Query:   121 VAEAETNWPLLTVSKSFFEA 140
             VA  E NWPLL  ++  F+A
Sbjct:   805 VARLEENWPLLASARGTFDA 824

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CIE6	COPA_MOUSE	No assigned EC number	0.5555	0.9723	0.1437	yes	N/A
P53621	COPA_HUMAN	No assigned EC number	0.5700	0.9723	0.1437	yes	N/A
Q27954	COPA_BOVIN	No assigned EC number	0.5700	0.9723	0.1437	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	181
pfam04053	429	pfam04053, Coatomer_WDAD, Coatomer WD associated r	3e-37
pfam06957	421	pfam06957, COPI_C, Coatomer (COPI) alpha subunit C	0.003

>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region

 Score =  132 bits (335), Expect = 3e-37
 Identities = 43/84 (51%), Positives = 55/84 (65%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN ++ E  YQ+ K+FDKL  LYL TGN EKLKK+ KIAE R D +  +Q AL LG+V 
Sbjct: 346 QGNIKLAEEAYQKAKDFDKLLLLYLSTGNKEKLKKLAKIAEERGDYNSAFQNALYLGDVE 405

Query: 62  ERIKILKSCGQTSLAYLTAATHGL 85
           + + IL   G+   AYL A T+G 
Sbjct: 406 KCVDILIKTGRLPEAYLFAKTYGP 429

This region is composed of WD40 repeats. Length = 429

>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 7/39 (17%)

Query: 143 DEDLEGEGRGRRTHAGGDDGD-EEGGDEDGGWDVGDDLV 180
           D  LEGE          DD +  EGGDE+GGWDV DDLV
Sbjct: 52  DGYLEGE------DGLLDDEEGPEGGDEEGGWDVEDDLV 84

This family represents the C-terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit. Coatomer (COPI) is a large cytosolic protein complex which forms a coat around vesicles budding from the Golgi apparatus. Such coatomer-coated vesicles have been proposed to play a role in many distinct steps of intracellular transport. Note that many family members also contain the pfam04053 domain. Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG0292|consensus	1202		100.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	99.95
KOG0276|consensus	794		99.77
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	93.84
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.47
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	82.64
KOG1920|consensus	1265		81.04

>KOG0292|consensus

Probab=100.00  E-value=3.3e-46  Score=358.54  Aligned_cols=136  Identities=65%  Similarity=1.032  Sum_probs=130.8

Q ss_pred             CCccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHH
Q psy2691           1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTA   80 (181)
Q Consensus         1 ~qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~A   80 (181)
                      +||||+|||||||++|+|++|||||++|||.+||+||++||+.|+|.++.|||+||+||+++|++||.++|++|+||++|
T Consensus       684 ~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta  763 (1202)
T KOG0292|consen  684 RQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTA  763 (1202)
T ss_pred             HhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcHHHHHHHHhhCCCCCCCCCCCCCCCCcccCCCCccccCCCCCCccccccchhh
Q psy2691          81 ATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTVSKSFFE  139 (181)
Q Consensus        81 kt~g~~e~a~~i~~~~~~~~~~~~lp~~~~~~~~~~P~~p~~~~~~nWPll~~~~s~fe  139 (181)
                      ++||+++.|++++++++..  ...||+..+++++++||+|+++. +||||+.+++++||
T Consensus       764 ~~~G~~~~ae~l~ee~~~~--~~~lP~~~~~a~ll~pP~p~~~l-~nwPLl~~s~~~fe  819 (1202)
T KOG0292|consen  764 AAHGLEDQAEKLGEELEKQ--VPSLPEVDPNASLLQPPVPIMPL-ENWPLLSVSKGTFE  819 (1202)
T ss_pred             hhcCcHHHHHHHHHhhccc--cCCCCCCCCcccccCCCCccccc-cCCchhhhhhhhhh
Confidence            9999999999999999975  45799988889999999999666 79999999999999

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.95  E-value=4e-28  Score=222.39  Aligned_cols=85  Identities=48%  Similarity=0.660  Sum_probs=78.1

Q ss_pred             CCccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHH
Q psy2691           1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTA   80 (181)
Q Consensus         1 ~qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~A   80 (181)
                      +|||++|||+||||++||++|+|||+++||++||+||+++|+.+|++|++|+|+||+||+++||++|+++||+||||+||
T Consensus       359 ~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A  438 (443)
T PF04053_consen  359 RQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFA  438 (443)
T ss_dssp             HTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHH
T ss_pred             HcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC
Q psy2691          81 ATHGL   85 (181)
Q Consensus        81 kt~g~   85 (181)
                      |||||
T Consensus       439 ~ty~~  443 (443)
T PF04053_consen  439 RTYGP  443 (443)
T ss_dssp             HHTT-
T ss_pred             HhcCC
Confidence            99997

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0276|consensus

Probab=99.77  E-value=9.1e-19  Score=165.41  Aligned_cols=89  Identities=25%  Similarity=0.327  Sum_probs=86.0

Q ss_pred             CccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHH
Q psy2691           2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAA   81 (181)
Q Consensus         2 qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Ak   81 (181)
                      .|++.+|++|++|++|+.+|+|||+++||.++|.++++.|+..|.+|.+|.++|++|++++|.++|++++|+|+|++|||
T Consensus       679 ~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~Ar  758 (794)
T KOG0276|consen  679 AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFAR  758 (794)
T ss_pred             cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcHHHH
Q psy2691          82 THGLSEEAA   90 (181)
Q Consensus        82 t~g~~e~a~   90 (181)
                      ||+|+++..
T Consensus       759 tYlps~vs~  767 (794)
T KOG0276|consen  759 TYLPSQVSR  767 (794)
T ss_pred             hhChHHHHH
Confidence            999976544

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.84  E-value=0.017  Score=53.81  Aligned_cols=13  Identities=69%  Similarity=1.475  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCc
Q psy2691         167 GDEDGGWDVGDDL  179 (181)
Q Consensus       167 ~~e~~gWd~~dDl  179 (181)
                      +++++||||+|||
T Consensus        72 ~~e~~gWD~ddDl   84 (422)
T PF06957_consen   72 EDEEGGWDLDDDL   84 (422)
T ss_dssp             -------------
T ss_pred             ccccccccccccc
Confidence            4466799998675

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.47  E-value=1.8  Score=42.47  Aligned_cols=81  Identities=21%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             HHHHHHHHH--hcCchhHHHHHHhhCCHHHHHHHHHHHH-Hhc--------------------------------hhhHH
Q psy2691           6 QIVEMCYQR--TKNFDKLAFLYLITGNLEKLKKMMKIAE-IRR--------------------------------DISGQ   50 (181)
Q Consensus         6 ~laE~~yq~--~kdfd~LsfLYl~tGn~ekL~km~~iAe-~rg--------------------------------d~~~~   50 (181)
                      +||...|++  .+|--.-+++|+..|...-|..|-++|. +++                                .+.-+
T Consensus       392 ~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~~~~~k~~~Fl~ndF~~~rwr~AAlKNAyaLlsk~Ry~~A  471 (631)
T PF12234_consen  392 KIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWHKEQQKMAKFLSNDFTEPRWRTAALKNAYALLSKHRYEYA  471 (631)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcccccHHHHHHHhhcCCChHHHHHHHHhHHHHHhcccHHHH
Confidence            477888998  4777778999999999999999988763 111                                11122


Q ss_pred             HHHHHhhCCHHHHHHHHHH-cCCchHHHHHHHhcCCc
Q psy2691          51 YQAALLLGEVGERIKILKS-CGQTSLAYLTAATHGLS   86 (181)
Q Consensus        51 f~~~l~lgdv~~rv~vL~~-~g~~plAyl~Akt~g~~   86 (181)
                      =.-.|+.|++..+|+|+.+ .+.+.||.++||-|.-+
T Consensus       472 AaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d  508 (631)
T PF12234_consen  472 AAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGD  508 (631)
T ss_pred             HHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCC
Confidence            2234667889999999876 48899999999999875

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=82.64  E-value=11  Score=33.74  Aligned_cols=90  Identities=10%  Similarity=0.040  Sum_probs=55.7

Q ss_pred             HHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHH
Q psy2691           9 EMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEE   88 (181)
Q Consensus         9 E~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~   88 (181)
                      ..+|-..++|+.|.-+..+.-..=+-.-..+++-..|....+-..-=-+.+ ++||+.+.++|.+.+|.-.|...+..+.
T Consensus       215 i~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~  293 (319)
T PF04840_consen  215 IKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDL  293 (319)
T ss_pred             HHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHH
Confidence            345555555555554433222222222233344444443332222222566 9999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q psy2691          89 AAELESNLRTA   99 (181)
Q Consensus        89 a~~i~~~~~~~   99 (181)
                      -..|...+..+
T Consensus       294 L~~i~~~~~~~  304 (319)
T PF04840_consen  294 LKQILKRCPGN  304 (319)
T ss_pred             HHHHHHHCCCC
Confidence            99998877644

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1920|consensus

Probab=81.04  E-value=13  Score=39.29  Aligned_cols=86  Identities=12%  Similarity=0.090  Sum_probs=63.8

Q ss_pred             CccHHHHHHHHHHhcCchhHHHHHH-hhCCHHHHH----HHHHHHHHhchhhHHHH-HHHhhCCHHHHHHHHHHcCCchH
Q psy2691           2 QGNHQIVEMCYQRTKNFDKLAFLYL-ITGNLEKLK----KMMKIAEIRRDISGQYQ-AALLLGEVGERIKILKSCGQTSL   75 (181)
Q Consensus         2 qGn~~laE~~yq~~kdfd~LsfLYl-~tGn~ekL~----km~~iAe~rgd~~~~f~-~~l~lgdv~~rv~vL~~~g~~pl   75 (181)
                      -||++=|-.||+-+++...++=+.- .+-..+++.    +|+.--..++++.-+-. .-.|++|+++-|.+|+++-++.+
T Consensus       965 ~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen  965 CGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEE 1044 (1265)
T ss_pred             hccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence            4788888888888888887665554 233344444    45544555666655554 47899999999999999999999


Q ss_pred             HHHHHHhcCCcH
Q psy2691          76 AYLTAATHGLSE   87 (181)
Q Consensus        76 Ayl~Akt~g~~e   87 (181)
                      |.-.|..++-++
T Consensus      1045 Alrva~~~~~~d 1056 (1265)
T KOG1920|consen 1045 ALRVASKAKRDD 1056 (1265)
T ss_pred             HHHHHHhcccch
Confidence            999999999544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
3mkq_B	177	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-14

>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 177

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN  + EM YQ   +FDKL+FLYL+TG++ KL KM  IA+ R D               
Sbjct: 47  QGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTK 106
Query: 62  ERIKILKSCGQTSLAYLTAATHGXXXXXXXXXXNLRTADPNATLPTVHPEAQLLRPPAPV 121
           ER  I    G   LAY  A  +G               + + TLP     +  ++ P  +
Sbjct: 107 ERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQMDASNFVQRPV-I 165
Query: 122 AEAETNWPL 130
           ++    WPL
Sbjct: 166 SKPLEKWPL 174
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	7e-43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 177

 Score =  140 bits (353), Expect = 7e-43
 Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           QGN  + EM YQ   +FDKL+FLYL+TG++ KL KM  IA+ R D               
Sbjct: 47  QGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTK 106

Query: 62  ERIKILKSCGQTSLAYLTAATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPV 121
           ER  I    G   LAY  A  +G    A+         + + TLP     +  ++ P  +
Sbjct: 107 ERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQMDASNFVQRP-VI 165

Query: 122 AEAETNWPLL 131
           ++    WPL 
Sbjct: 166 SKPLEKWPLK 175

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  131 bits (331), Expect = 5e-36
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 2   QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVG 61
           + N ++    +    + + L  L+    N E L  + K AE     +  + A  + G++ 
Sbjct: 694 RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQ 753

Query: 62  ERIKILKSCGQTSLAYLTAATHGLSEEAAE 91
               +L    + S A    +T+GL +    
Sbjct: 754 GAKDLLIKSQRFSEAAFLGSTYGLGDNEVN 783

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 58/185 (31%)

Query: 6   QIVEMCYQRTKNFDKLA-FLYLITGNLEKLKKMMKIAEIRRDISG-QYQAALL-LGEVGE 62
            + ++ YQ   N+   +     I   +  ++     AE+RR +    Y+  LL L  V  
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-----AELRRLLKSKPYENCLLVLLNVQN 255

Query: 63  RIKILK----SCGQT-------SLA-YLTAAT----------HGLSE-EAAELES---NL 96
             K       SC +         +  +L+AAT            L+  E   L     + 
Sbjct: 256 A-KAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 97  RTADPNATLP----TVHPE-----AQLLRPPAPVAEAETNWP------LLTVSKSFFEAL 141
           R  D    LP    T +P      A+ +R      +   NW       L T+ +S    L
Sbjct: 314 RPQD----LPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVL 366

Query: 142 DDEDL 146
           +  + 
Sbjct: 367 EPAEY 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.75
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.23
2pm7_A	399	Protein WEB1, protein transport protein SEC31; bet	83.52

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-43  Score=287.28  Aligned_cols=132  Identities=32%  Similarity=0.515  Sum_probs=121.2

Q ss_pred             CCccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHH
Q psy2691           1 MQGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTA   80 (181)
Q Consensus         1 ~qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~A   80 (181)
                      +||||+|||+|||++|||++|+|||++|||.++|+||++||+.+|++|++|+++||+||+++||++|+++||+||||+||
T Consensus        46 ~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A  125 (177)
T 3mkq_B           46 AQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVA  125 (177)
T ss_dssp             HTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcHHHHHHHHhhCCCCCCCCCCCCCCCCcccCCCCccccCCCCCCcccc
Q psy2691          81 ATHGLSEEAAELESNLRTADPNATLPTVHPEAQLLRPPAPVAEAETNWPLLTV  133 (181)
Q Consensus        81 kt~g~~e~a~~i~~~~~~~~~~~~lp~~~~~~~~~~P~~p~~~~~~nWPll~~  133 (181)
                      +|||++++|++|++++|++++++.+|+. ..+.+.+||+|+.+...|||++..
T Consensus       126 ~t~g~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~~~p~~~~~~~~~nwp~~~~  177 (177)
T 3mkq_B          126 KANGDEAAASAFLEQAEVDEQDVTLPDQ-MDASNFVQRPVISKPLEKWPLKEA  177 (177)
T ss_dssp             HHTTCHHHHHHHHHHTTCCGGGCCCCSC-CCCSCCSCCCCCSSCCSSCCBCCC
T ss_pred             HHcCcHHHHHHHHHHhCCccccccCCCc-CCcccCCCCCCCCCCCCCCCCCCC
Confidence            9999999999999999999999889987 444433666666445699999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.75  E-value=6.6e-18  Score=152.64  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=84.7

Q ss_pred             CccHHHHHHHHHHhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHH
Q psy2691           2 QGNHQIVEMCYQRTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGERIKILKSCGQTSLAYLTAA   81 (181)
Q Consensus         2 qGn~~laE~~yq~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Ak   81 (181)
                      +||+++|++||++++||++|.|||.++||.++|.+|+++|+.+|+++.+|++++++|++++|++++++++|+++|+.+|+
T Consensus       694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          694 RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcH
Q psy2691          82 THGLSE   87 (181)
Q Consensus        82 t~g~~e   87 (181)
                      +|++.+
T Consensus       774 ~~~~~~  779 (814)
T 3mkq_A          774 TYGLGD  779 (814)
T ss_dssp             HTTCCH
T ss_pred             HhCCCh
Confidence            999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.23  E-value=1.4  Score=39.43  Aligned_cols=84  Identities=13%  Similarity=0.005  Sum_probs=46.6

Q ss_pred             HhcCchhHHHHHHhhCCHHHHHHHHHHHHHhchhhHHHHHHHhhCCHHH----------------HHHHHHHcCCchHHH
Q psy2691          14 RTKNFDKLAFLYLITGNLEKLKKMMKIAEIRRDISGQYQAALLLGEVGE----------------RIKILKSCGQTSLAY   77 (181)
Q Consensus        14 ~~kdfd~LsfLYl~tGn~ekL~km~~iAe~rgd~~~~f~~~l~lgdv~~----------------rv~vL~~~g~~plAy   77 (181)
                      +.++|+...=++....+...-++|++.|.+.+++..|-.|+--+||...                ..++....|++..|+
T Consensus       664 ~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~  743 (814)
T 3mkq_A          664 KVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF  743 (814)
T ss_dssp             HHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence            3455555555555555556666666666666666666666555555543                334444455555566


Q ss_pred             HHHHhcCCcHHHHHHHHhhC
Q psy2691          78 LTAATHGLSEEAAELESNLR   97 (181)
Q Consensus        78 l~Akt~g~~e~a~~i~~~~~   97 (181)
                      .++.-.|.-+.|.++...++
T Consensus       744 ~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          744 NAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             HHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHcC
Confidence            55555555555555555444

>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B

Probab=83.52  E-value=1.8  Score=38.55  Aligned_cols=41  Identities=12%  Similarity=0.017  Sum_probs=37.2

Q ss_pred             hHHHHHHHhhCCHHHHHHHHHHcCCchHHHHHHHhcCCcHH
Q psy2691          48 SGQYQAALLLGEVGERIKILKSCGQTSLAYLTAATHGLSEE   88 (181)
Q Consensus        48 ~~~f~~~l~lgdv~~rv~vL~~~g~~plAyl~Akt~g~~e~   88 (181)
                      ...+..+|+.||.++-|++..+.+|+..|.++|.+.|.+-+
T Consensus       147 d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~  187 (399)
T 2pm7_A          147 EQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERL  187 (399)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHH
Confidence            45588899999999999999999999999999999887655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00