Psyllid ID: psy2712

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
MRQHDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDESD
ccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHcccccccHHccccHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccEEEHEHccccccccEEEEEcccccccccEEEEEEccccccccEEEEEcccccccccEEEEEEcccccccEEEEEEEccccccccEEEEEEcccccc
mrqhdtdenVRYEVVTAIVTTArrdfdivssSEDLLTFVKERtldkkvmphrltgnaiPILISYVDDClnhgnlidelglhpgtageRGLKLLVMLSYvypchfmqQSSIQALLKMLTIEDEIVAPLVFSVLSFlgkyrplgeVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMdensengvrtVDLFVDILDKVkmnltpdspnyRTAIIALGHIaynmpnkfpavIKNTVSRKIVKELLIKETEESYQYkkdwvfeedlpnevrCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNkgdllqsdkMSKQEMAWMRLSAGCAMLKIceqkgvgdqyspeqfYNLSRLLIDEVPEVREIFANKLHkglgrnlpnkclpldfmgfyalggleeekKLKMSTEKALAQLPNFLPDFMLVFAIpvlthtpaytsneAVDELLVMRACLWFIleplltqpsdsfSSLFFKEMIDQMKNCkdalnpddentnnvsaldlngdentnnvsaldlngdentnnvsaldlngdentnnvsaldlngdentnnvsaldlngdentnnvsaldlngdentnnvsaldlngdesd
mrqhdtdenvryEVVTAivttarrdfdivsssedlLTFVKertldkkvmphrltgnaiPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVmdensengvrTVDLFVDILDKVKmnltpdspnYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKeteesyqykkdwvfeedlpnEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANklhkglgrnlpnkCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSAldlngdentnnvsaldlngdesd
MRQHDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDESD
*********VRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQ******QEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMID******************************************************************************************************************
******D*NVRYEVVTAIVTTARRDF******ED*LTFVKERTLDKKVMPHRLTGNAIPILISYVDDC*****************GERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEV*KEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELL**************VFEEDLPNEVRCKMEGMKMMARWLLGLKAH*ESAQKTFRMLNAVIVNKGDLL******KQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKD**********NVSALDLNGDENT************************************************************************************
********NVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDESD
*****TDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKET*******KDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNG****
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MRQHDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDESD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query602 2.2.26 [Sep-21-2011]
Q29RF7 1337 Sister chromatid cohesion yes N/A 0.724 0.326 0.304 2e-61
A4L9P7 1333 Sister chromatid cohesion yes N/A 0.724 0.327 0.302 6e-61
Q5F3V3 1330 Sister chromatid cohesion yes N/A 0.730 0.330 0.296 3e-60
Q4KLU7 1323 Sister chromatid cohesion N/A N/A 0.730 0.332 0.292 3e-59
Q4QXM3 1323 Sister chromatid cohesion N/A N/A 0.730 0.332 0.292 3e-59
Q5U241 1464 Sister chromatid cohesion N/A N/A 0.735 0.302 0.296 5e-58
A1L1F4 1320 Sister chromatid cohesion yes N/A 0.784 0.357 0.294 9e-58
Q498H0 1448 Sister chromatid cohesion N/A N/A 0.735 0.305 0.288 5e-56
Q4VA53 1446 Sister chromatid cohesion no N/A 0.735 0.306 0.296 5e-56
Q6TRW4 1447 Sister chromatid cohesion no N/A 0.735 0.306 0.296 5e-56
>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 Back     alignment and function desciption
 Score =  237 bits (604), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/500 (30%), Positives = 273/500 (54%), Gaps = 64/500 (12%)

Query: 34   DLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLL 93
            +++ F+ ER     + P  +   AI  L+  ++  +      +E G+ P TA   GL+LL
Sbjct: 609  EMVKFLLER-----IAPVHIDSEAISALVKLMNKSIEGTADDEEEGVSPDTAIRSGLELL 663

Query: 94   VMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQ-- 151
             +LS+ +P  F    + ++LL+ L +ED+ VA     +      +R  G   + ++ Q  
Sbjct: 664  KVLSFTHPTSFHSAETYESLLQCLRMEDDKVAEAAIQI------FRNTGHKIETDLPQIR 717

Query: 152  --LVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKV 209
              L+PI     ++GTP QAKQA+ C++    +    EV                 I + +
Sbjct: 718  STLIPILHQKAKRGTPHQAKQAVHCIHAIFTNK---EVQ-------------LAQIFEPL 761

Query: 210  KMNLTPDSP-NYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKD 268
              +L  D P    T +++LGHI+   P++F + +K+ V+  IVK+LL+ +     +  K 
Sbjct: 762  SRSLNADVPEQLITPLVSLGHISMLAPDQFASPMKSVVANFIVKDLLMNDRSTGEKNGKL 821

Query: 269  WVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-ESAQKTFRMLNAVIVNKGDLLQSDKMS 327
            W  +E++  EV  K++ +K++ RWLLG+K ++ +SA  T R+L+A++V++GDL +  ++S
Sbjct: 822  WSPDEEVSPEVLAKVQAIKLLVRWLLGMKNNQSKSANSTLRLLSAMLVSEGDLTEQKRIS 881

Query: 328  KQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLG 387
            K +M+ +RL+AG A++K+ ++    +  +PEQF   + ++ DE  +VR+IFA KLHK L 
Sbjct: 882  KSDMSRLRLAAGSAIMKLAQEPCYHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALV 941

Query: 388  RNLPNKCLPLDFMGFYALGGLEEEKKLK----------------------MSTEKALAQL 425
            + L    LPL++M  +AL   +  K+ +                      M+TEK L+  
Sbjct: 942  KLL----LPLEYMAIFALCAKDPVKERRAHARQCLLKNISIRREYIKQNPMATEKLLS-- 995

Query: 426  PNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKE 485
               LP++++ + I +L H P +T ++ VD+L  ++ CLWF+LE L+T+ +++ S  F K+
Sbjct: 996  --LLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECLWFMLEVLMTK-NENNSHAFMKK 1052

Query: 486  MIDQMKNCKDALNPDDENTN 505
            M + +K  +DA +PD+  TN
Sbjct: 1053 MAENIKLTRDAQSPDESKTN 1072
Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.
Homo sapiens (taxid: 9606)
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 Back     alignment and function description
>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-b PE=1 SV=1 Back     alignment and function description
>sp|Q4QXM3|PD5AA_XENLA Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis GN=pds5a-a PE=1 SV=1 Back     alignment and function description
>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 Back     alignment and function description
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1 Back     alignment and function description
>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 Back     alignment and function description
>sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
91086137 1200 PREDICTED: similar to androgen induced i 0.719 0.360 0.563 1e-151
383864025 1210 PREDICTED: sister chromatid cohesion pro 0.719 0.357 0.537 1e-148
383864027 1198 PREDICTED: sister chromatid cohesion pro 0.719 0.361 0.537 1e-148
340717140 1210 PREDICTED: sister chromatid cohesion pro 0.719 0.357 0.535 1e-148
350416424 1198 PREDICTED: sister chromatid cohesion pro 0.719 0.361 0.535 1e-148
328778597 1210 PREDICTED: sister chromatid cohesion pro 0.719 0.357 0.533 1e-148
345492144 1211 PREDICTED: sister chromatid cohesion pro 0.719 0.357 0.557 1e-148
345492146 1199 PREDICTED: sister chromatid cohesion pro 0.719 0.361 0.557 1e-148
380015096 1198 PREDICTED: LOW QUALITY PROTEIN: sister c 0.719 0.361 0.531 1e-147
332021295 1197 Sister chromatid cohesion protein PDS5-l 0.719 0.361 0.531 1e-146
>gi|91086137|ref|XP_968906.1| PREDICTED: similar to androgen induced inhibitor of proliferation (as3) / pds5 [Tribolium castaneum] gi|270010223|gb|EFA06671.1| hypothetical protein TcasGA2_TC009599 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/477 (56%), Positives = 339/477 (71%), Gaps = 44/477 (9%)

Query: 57   AIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKM 116
            AI +L+ YV+DCL  GN IDE+GLHP TAG+RGLKLLVMLS V+PCHF     ++ L+++
Sbjct: 609  AIKLLVGYVEDCLKGGNTIDEVGLHPATAGDRGLKLLVMLSVVFPCHFQYADVLEQLMEL 668

Query: 117  LTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLY 176
            L +EDE VAPLV SV +FLGKYR L E F + M  L PIC+++ + GTPKQAK AI C+Y
Sbjct: 669  LKLEDENVAPLVLSVFTFLGKYRCLYEQFPDLMDALAPICKNLAQTGTPKQAKGAIHCIY 728

Query: 177  KNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPN 236
            KN+        + E+         LF DIL+ VK NL P SP+YRTAI+ LGHIA+N+P 
Sbjct: 729  KNM------PALHEH---------LFPDILNSVKENLGPTSPHYRTAIVTLGHIAFNVPE 773

Query: 237  KFPAVIKNTVSRKIVKELLIKETEESYQYKKD---WVFEEDLPNEVRCKMEGMKMMARWL 293
            ++   IKN VSRKIVKELL+KE  E      D   W  EE+LP E RCK+EG+K MARWL
Sbjct: 774  RYKVQIKNIVSRKIVKELLVKEVGERDIDMSDSEIWCPEEELPEETRCKIEGLKAMARWL 833

Query: 294  LGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGD 353
            LGLK    SAQKTFRMLNA I++KGDLLQS K+ K EM+W+RL+AGCAMLK+CEQKGVGD
Sbjct: 834  LGLKQDTASAQKTFRMLNAFILHKGDLLQSGKLLKCEMSWLRLAAGCAMLKVCEQKGVGD 893

Query: 354  QYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKK 413
            QY+ EQFYNLS+L++DEV +VREIFA KLHKGL + LPNKCLPLDFMG+YAL G E E +
Sbjct: 894  QYTAEQFYNLSQLMVDEVKQVREIFAAKLHKGLSKGLPNKCLPLDFMGYYALAGRETESR 953

Query: 414  LKMS-------------------------TEKALAQLPNFLPDFMLVFAIPVLTHTPAYT 448
            L+ +                          +KA++QLP  LPD+MLVFA+P+L H PA +
Sbjct: 954  LRTTIKNYMVADINRRRDYVKTLTMGTGQADKAMSQLPFILPDYMLVFAVPILAHDPALS 1013

Query: 449  SNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDENTN 505
              + V +L+  + CLWFILEPL+T+ SD FS  F+K +I++MKN KDA+ PDD++ N
Sbjct: 1014 RWDDVQDLIRAKQCLWFILEPLVTK-SDYFSYGFYKSLIERMKNHKDAIRPDDDSIN 1069

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383864025|ref|XP_003707480.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383864027|ref|XP_003707481.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340717140|ref|XP_003397045.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like [Bombus terrestris] gi|350416427|ref|XP_003490946.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350416424|ref|XP_003490945.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|328778597|ref|XP_623860.2| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A-like [Apis mellifera] Back     alignment and taxonomy information
>gi|345492144|ref|XP_003426788.1| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345492146|ref|XP_001602270.2| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-A isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380015096|ref|XP_003691547.1| PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog B-A-like [Apis florea] Back     alignment and taxonomy information
>gi|332021295|gb|EGI61674.1| Sister chromatid cohesion protein PDS5-like protein B-A [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
FB|FBgn02600121218 pds5 [Drosophila melanogaster 0.621 0.307 0.467 1.7e-121
UNIPROTKB|Q498H0 1448 pds5b-a "Sister chromatid cohe 0.566 0.235 0.304 8.4e-66
UNIPROTKB|Q29RF7 1337 PDS5A "Sister chromatid cohesi 0.717 0.323 0.317 9.2e-66
UNIPROTKB|I3LU95 1291 PDS5A "Uncharacterized protein 0.717 0.334 0.317 1.3e-65
UNIPROTKB|E2R7R4 1337 PDS5A "Uncharacterized protein 0.717 0.323 0.317 1.9e-65
RGD|1307094 1333 Pds5a "PDS5, regulator of cohe 0.717 0.324 0.313 3.1e-65
UNIPROTKB|F1NIQ3 1330 PDS5A "Sister chromatid cohesi 0.717 0.324 0.307 1.4e-64
UNIPROTKB|Q5F3V3 1330 PDS5A "Sister chromatid cohesi 0.717 0.324 0.305 1.7e-64
UNIPROTKB|Q4KLU7 1323 pds5a-b "Sister chromatid cohe 0.724 0.329 0.303 3.3e-63
UNIPROTKB|Q4QXM3 1323 pds5a-a "Sister chromatid cohe 0.724 0.329 0.303 3.3e-63
FB|FBgn0260012 pds5 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 921 (329.3 bits), Expect = 1.7e-121, Sum P(3) = 1.7e-121
 Identities = 179/383 (46%), Positives = 253/383 (66%)

Query:    42 RTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYP 101
             + L ++V    +   +I +LIS ++ C+  G++ +E+G+    AGERGLKLL MLSYV+ 
Sbjct:   596 KMLIERVASVMVDKESIGVLISLIEQCIEKGSMCEEIGISAQEAGERGLKLLAMLSYVFS 655

Query:   102 CHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPL-GEVFKEEMKQLVPICQDMI 160
              HF   +S++ L+ +L+ E + VAPLV   L+ LG+Y+PL  +     + +L P+C+D  
Sbjct:   656 AHFFTDTSLRHLISLLSYEQDYVAPLVLKTLTHLGRYQPLIDDPTPAILDELAPVCKDFA 715

Query:   161 EKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVD----LFVDILDKVKMNLTPD 216
               GTPKQAK A+RC++ N   S + +     + +   T      +F +I++ +++ LTP+
Sbjct:   716 LIGTPKQAKHAVRCIFVNSQSSASTDGATSGAGSASTTTQTVHPIFNEIIETLRLKLTPN 775

Query:   217 SPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYK----KDWVFE 272
               + RT I+ LGHIAYNMP  F   IKN ++R+IVKELLI+E      Y+     DW  +
Sbjct:   776 CEHQRTKIVTLGHIAYNMPQAFLTPIKNMIARRIVKELLIQEVPAQRDYELPEDSDWCAQ 835

Query:   273 EDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMA 332
             E LP +  CK++ +K MARWLLGL+  + +AQKTFRML A +  +GDLL  +++   E +
Sbjct:   836 EKLPPDTLCKLDALKAMARWLLGLRTDEHAAQKTFRMLAAFVNQRGDLLGQNRLCGAEKS 895

Query:   333 WMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPN 392
             W+RL A CAMLK+CEQKGVGDQYS EQ+  LS+L+ D VPEVREIFA KLHKGL R+LP 
Sbjct:   896 WLRLGAACAMLKVCEQKGVGDQYSAEQYLQLSQLMADPVPEVREIFARKLHKGLSRSLPR 955

Query:   393 KCLPLDFMGFYALGGLEEEKKLK 415
              CLPLDFMG Y L GLE E+KL+
Sbjct:   956 NCLPLDFMGLYVLAGLETERKLQ 978
GO:0007059 "chromosome segregation" evidence=IMP
GO:0007062 "sister chromatid cohesion" evidence=IMP
GO:0030717 "karyosome formation" evidence=IMP
GO:0005700 "polytene chromosome" evidence=IDA
GO:0008278 "cohesin complex" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
UNIPROTKB|Q498H0 pds5b-a "Sister chromatid cohesion protein PDS5 homolog B-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LU95 PDS5A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIQ3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3V3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLU7 pds5a-b "Sister chromatid cohesion protein PDS5 homolog A-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q4QXM3 pds5a-a "Sister chromatid cohesion protein PDS5 homolog A-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 0.002
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information 
 Score = 41.0 bits (96), Expect = 0.002
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 468 EPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLN 527
           + L     D F  L+  +  D         + DD++   +   D + D   NN    D +
Sbjct: 84  KSLDDDDDDEFDFLYEDDEDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFD 143

Query: 528 GDENTNNVSALDLNGDENTNNVSALDLNGDEN--TNNVSALDLNGDENTNNVSALDLNGD 585
            D+++N  S  D    ++ N  SA  L  ++   T N       G++     +A    G 
Sbjct: 144 QDDSSN--SQTDQGLKQSVNLSSAEKLIEEKKGQTENTFKFYNFGNDGEE--AAAKDGGK 199

Query: 586 ENTNNVSALDLNGDESD 602
             +++   L+ +  + D
Sbjct: 200 SKSSDPGPLNDSDGQGD 216

Length = 844

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 602
KOG1525|consensus 1266 100.0
KOG2171|consensus 1075 97.7
KOG1525|consensus 1266 96.45
PTZ00429746 beta-adaptin; Provisional 96.42
KOG1824|consensus 1233 96.36
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 96.02
KOG2171|consensus 1075 95.58
PTZ00429746 beta-adaptin; Provisional 95.58
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 94.82
KOG0414|consensus1251 94.78
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 93.63
KOG1242|consensus569 92.33
KOG1824|consensus1233 92.22
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.79
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 90.48
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 90.25
KOG2259|consensus 823 87.15
PRK09687280 putative lyase; Provisional 82.52
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 81.11
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 80.29
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 80.18
>KOG1525|consensus Back     alignment and domain information 
Probab=100.00  E-value=3e-43  Score=414.23  Aligned_cols=448  Identities=29%  Similarity=0.445  Sum_probs=390.7

Q ss_pred             cccccccc-CcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchH
Q psy2712          48 VMPHRLTG-NAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAP  126 (602)
Q Consensus        48 ~spl~~N~-ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e  126 (602)
                      .-|+.++. +++..+++....++.+.......++..+.+...+..||.++|.++|.+|..++.+..+...+..++..+.+
T Consensus       597 I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~  676 (1266)
T KOG1525|consen  597 IAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAP  676 (1266)
T ss_pred             hcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhH
Confidence            45577888 88899998888777666656667777888999999999999999999999999999999888877788889


Q ss_pred             HHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHH
Q psy2712         127 LVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDIL  206 (602)
Q Consensus       127 ~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii  206 (602)
                      .+|+.+-+.|  ++.....|...+.+.+.++.++..|+|.|||+|.+|+.++.+.+..            ++..+|.++.
T Consensus       677 ~vLk~~~~~~--~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~~~------------~l~q~~~~~~  742 (1266)
T KOG1525|consen  677 VVLKKLESQG--KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSKFC------------KLKQTFEEIK  742 (1266)
T ss_pred             HHHHHHHhcc--ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhhhh------------HHHHHhhhhH
Confidence            9999999998  4444557777888999999999999999999999999887776521            1257788888


Q ss_pred             HHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccc-cCCCCccCCC-CCHHHHHHHH
Q psy2712         207 DKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQ-YKKDWVFEED-LPNEVRCKME  284 (602)
Q Consensus       207 e~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~-~~~~W~~d~~-l~~e~~aKi~  284 (602)
                      +.+...+....+++.+++++||+|++..|..|.++.+..+..||+|++++.+..+++. ....|++.+. +++.+.+|+.
T Consensus       743 d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~e~~~~~~~~P~~~~~~p~~~~k~~  822 (1266)
T KOG1525|consen  743 DNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPGEKNKSKEWLPSDKLLSPNTSLKVL  822 (1266)
T ss_pred             HHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCccccccCccccCCcccccchhhhhHHH
Confidence            8887777777889999999999999999999999999989999999999888888875 4478999555 4999999999


Q ss_pred             HHHHHHHHhhcccchh---h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHH
Q psy2712         285 GMKMMARWLLGLKAHK---E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQF  360 (602)
Q Consensus       285 aLK~lvn~Ll~~~~~~---~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f  360 (602)
                      ++|++++||++...+.   + .+...+++|..++.+.|++..+..+|..+++|||+.|+++++|+|..+.|.+++++++|
T Consensus       823 a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~a~~~ilKl~~~~~~~e~~~~~~~  902 (1266)
T KOG1525|consen  823 AIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLTAKITILKLASEKSYHEFINAEQY  902 (1266)
T ss_pred             HHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhhhhhheeeecccccchhccCCHHHH
Confidence            9999999999998764   2 22226779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchHHhHHHHH-------HHH-----------
Q psy2712         361 YNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTE-------KAL-----------  422 (602)
Q Consensus       361 ~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~elk~~v~-------~~~-----------  422 (602)
                      ..++++++|++++||..|+.||++++.+.+    +|..||+.++|++.++..+......       .|.           
T Consensus       903 ~~~~~~i~de~~~vR~~f~~kl~k~l~~i~----lp~~~~a~~~l~~~d~~~~~~~~~~~~~t~~~~~~r~~t~~e~~~s  978 (1266)
T KOG1525|consen  903 EKLILLISDECLQVRLVFLLKLHKGLSRIK----LPLEYMAKFKLCAPDVSKELLANKREEETKNSASRREQTKFERATS  978 (1266)
T ss_pred             HHHHHHhcCCchhHHHHHHHHccccccccc----cchhhhhHHHHhccchhhhhhhHHHHhhhhcchhhhhhhhhhhccC
Confidence            999999999999999999999999999888    9999999999999998887665511       111           


Q ss_pred             HcCCCCCchhHHHHHhhhccCCCCCCCcccHHHHHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhhhccCCCCCCCc
Q psy2712         423 AQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDE  502 (602)
Q Consensus       423 ~~~~~~~pEy~L~rLIhLLAHHPDF~~~~d~~~L~~~~~yL~FyLe~lat~~~eN~sl~f~~~i~erIKq~rDa~~~~~~  502 (602)
                      .....+.|||+.+|.+|++||||+|.+.++++.|..+.+|+||.++.+..+ .+|+..-++..+.+.+++.+|..+|++.
T Consensus       979 ~~~~~~~~e~V~~~~~~~la~d~~~~~~edv~~l~~~ke~~~~vl~~l~~~-~~n~~~~~~~~~~~~~~~~~d~~s~~d~ 1057 (1266)
T KOG1525|consen  979 DGTLAHLPEYVGSYVIHLLAHDPDFVKAEDVDSLSDLKECLWFVLEDLDEE-NENNQHKFWKREKEEIKGSEDEESPDDV 1057 (1266)
T ss_pred             chhhhhhhHHhhhhhhhhhccCccccccchhhhHHHHHHhHHHHHhhhhhh-hccchhHHHHHHHhhhhcchhhcCCccc
Confidence            122457799999999999999999999988999999999999999999998 7899888999999999999999998887


Q ss_pred             chhh--HHhhcccC
Q psy2712         503 NTNN--VSALDLNG  514 (602)
Q Consensus       503 ~~n~--~~lsDl~~  514 (602)
                      ..|+  |.+||+++
T Consensus      1058 ~~~~kl~~l~d~a~ 1071 (1266)
T KOG1525|consen 1058 GDNIKLYTLCDLAQ 1071 (1266)
T ss_pred             CCCceeeeHHhHHH
Confidence            6654  56899998

>KOG2171|consensus Back     alignment and domain information
>KOG1525|consensus Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
2qih_A157 Protein USPA1; trimeric, parallel alpha-helical co 1e-04
2qih_A157 Protein USPA1; trimeric, parallel alpha-helical co 3e-04
2qih_A157 Protein USPA1; trimeric, parallel alpha-helical co 3e-04
2qih_A157 Protein USPA1; trimeric, parallel alpha-helical co 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 63.7 bits (154), Expect = 1e-10
 Identities = 62/484 (12%), Positives = 149/484 (30%), Gaps = 112/484 (23%)

Query: 5   DTDEN-VRY---EVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKV-MPHRLTGN--A 57
           D +    +Y   ++++        +FD     +   + + +  +D  +     ++G    
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 58  IPILIS--------YVDDCL--NHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQ 107
              L+S        +V++ L  N+  L+  +        E+    ++   Y+        
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI------KTEQRQPSMMTRMYIE-QRDRLY 120

Query: 108 SSIQALLKM-LTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEM----KQ-LV-PICQD-- 158
           +  Q   K  ++     +      +   L + RP   V  + +    K  +   +C    
Sbjct: 121 NDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 159 -------------MIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDI 205
                        +    +P+   + ++ L   +  ++T       S++          I
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-----SRSDHSSNIKLRIHSI 230

Query: 206 LDKVKMNLTPDSPNYRTAIIALGHI-------AYNMPNKFPAVIKNTVSRKIVKELLIKE 258
             +++  L   S  Y   ++ L ++       A+N+  K   ++  T  +++   L    
Sbjct: 231 QAELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAAT 285

Query: 259 TEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK--ESAQKTFRMLNAVIVN 316
           T              D         E   ++ ++L   +          T     ++I  
Sbjct: 286 TTHISLDHHSMTLTPD---------EVKSLLLKYL-DCRPQDLPREVLTTNPRRLSII-- 333

Query: 317 KGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPE--QFYN------------ 362
             + ++    +     W  +   C  L    +  +      E  + ++            
Sbjct: 334 -AESIRDGLATWDN--WKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 363 ---LSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGF-YALGGLEEEKKLKMST 418
              LS +  D +     +  NKLHK    +L  K           ++  +  E K+K+  
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHK---YSLVEK----QPKESTISIPSIYLELKVKLEN 441

Query: 419 EKAL 422
           E AL
Sbjct: 442 EYAL 445
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis} Length = 157 Back     alignment and structure
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis} Length = 157 Back     alignment and structure
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis} Length = 157 Back     alignment and structure
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis} Length = 157 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.61
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.32
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 96.97
1qgr_A 876 Protein (importin beta subunit); transport recepto 96.91
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 96.72
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 96.69
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 96.67
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.56
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 96.56
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.53
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.5
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.44
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 96.23
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.23
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.03
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 95.89
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 95.86
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 95.86
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 95.8
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 95.41
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 95.38
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 95.18
1qgr_A876 Protein (importin beta subunit); transport recepto 94.61
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 94.56
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 94.56
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 94.44
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 94.37
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 94.17
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 94.02
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 93.86
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 93.85
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 93.68
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 93.61
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 93.55
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 93.46
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 92.95
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 92.7
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 92.61
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 92.49
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 91.84
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 91.6
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 91.27
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 90.84
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 89.56
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 89.54
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 88.57
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 88.28
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 87.86
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 87.44
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 86.83
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 85.75
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 84.55
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 84.32
3nmz_A458 APC variant protein; protein-protein complex, arma 81.85
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 81.65
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 81.56
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 81.13
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 80.22
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=97.61  E-value=0.029  Score=64.33  Aligned_cols=318  Identities=12%  Similarity=0.070  Sum_probs=189.2

Q ss_pred             chhHHHHHHHHHHHhh-CCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhh-----hHHhHHHHHHH
Q psy2712          84 TAGERGLKLLVMLSYV-YPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFK-----EEMKQLVPICQ  157 (602)
Q Consensus        84 ~~~~~a~eLL~~IS~~-~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p-----~~~~~l~~~Lk  157 (602)
                      .....+.+.+..|+.. +|.-..  +.+..|++.+...++.+.+.++.+|..+.+  ..+..+.     .....+.+.|.
T Consensus       105 ~vr~~~a~~i~~ia~~~~~~~wp--~ll~~L~~~l~~~~~~~r~~al~~L~~i~~--~~~~~~~~~~~~~~~~~il~~l~  180 (852)
T 4fdd_A          105 LIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICE--DSAEILDSDVLDRPLNIMIPKFL  180 (852)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTCT--THHHHHHHHHSCSSHHHHHHHHHHHHHHHH--HHTTHHHHCSSSSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCccccH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--HhHHHhchhhhcchHHHHHHHHH
Confidence            4556677777777776 454444  499999999988788888889999998873  2222111     01234666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCC
Q psy2712         158 DMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPN  236 (602)
Q Consensus       158 ~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~  236 (602)
                      ++....++.--..|+++|..+.....            ......+.+++..+...+..+++. -..++.+|+.++...|+
T Consensus       181 ~~l~~~~~~vR~~A~~aL~~~~~~~~------------~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~  248 (852)
T 4fdd_A          181 QFFKHSSPKIRSHAVACVNQFIISRT------------QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD  248 (852)
T ss_dssp             TTTTCSSHHHHHHHHHHHHTTTTTTC------------HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhccc------------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence            66566677766788899865544321            111244567777776655544433 34578899999999999


Q ss_pred             CchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcc--cch-hhhHHHHHHHHHHH
Q psy2712         237 KFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGL--KAH-KESAQKTFRMLNAV  313 (602)
Q Consensus       237 ~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~--~~~-~~~a~~v~kLL~~l  313 (602)
                      .+..+... +..++++- + .+.                +  ...+..|+.++...+...  +.. ......++..|...
T Consensus       249 ~~~~~l~~-l~~~l~~~-~-~~~----------------~--~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~  307 (852)
T 4fdd_A          249 RLLPHMHN-IVEYMLQR-T-QDQ----------------D--ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNG  307 (852)
T ss_dssp             HHGGGHHH-HHHHHHHH-H-TCS----------------S--HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHH-c-cCC----------------c--HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence            98888876 56666542 2 110                1  123567777766654321  100 12344555555444


Q ss_pred             Hhh--------cCcccCCCCCCHH-HHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q psy2712         314 IVN--------KGDLLQSDKMSKQ-EMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHK  384 (602)
Q Consensus       314 L~~--------~Gel~~~~~t~~~-~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k  384 (602)
                      +.-        +++.......... ....+|-+|+.++-.|++..  ++.+-+..+..+...++|+.+.||..=+.-|..
T Consensus       308 l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~--~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~  385 (852)
T 4fdd_A          308 MKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGA  385 (852)
T ss_dssp             TSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             cCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            410        1221111000000 12357889999999999864  456666677777788899999999987776655


Q ss_pred             hhccCCCCCCC---ChhhHHHHhhccccchHHhHHHHHHHH-------Hc-CCCCCchhHHHHHhhhcc
Q psy2712         385 GLGRNLPNKCL---PLDFMGFYALGGLEEEKKLKMSTEKAL-------AQ-LPNFLPDFMLVFAIPVLT  442 (602)
Q Consensus       385 ~L~~~~~~~~L---p~rf~~l~fL~A~EPd~elk~~v~~~~-------~~-~~~~~pEy~L~rLIhLLA  442 (602)
                      .....  +..+   -...+..++-...||++.+|......+       .. ....+.+.+++.++..|.
T Consensus       386 i~~~~--~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~  452 (852)
T 4fdd_A          386 IAEGC--MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL  452 (852)
T ss_dssp             TTTTT--HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT
T ss_pred             HHhcc--hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence            44210  0001   123345555556889999988743332       21 223344677888888875
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 96.79
d1b3ua_588 Constant regulatory domain of protein phosphatase 96.56
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 96.46
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 95.52
d1b3ua_588 Constant regulatory domain of protein phosphatase 95.29
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 94.85
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.5
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 94.11
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.02
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 93.69
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 92.82
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 92.6
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 92.06
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 91.85
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 90.53
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 88.73
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 86.22
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 85.53
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 81.72
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 81.13
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.023  Score=63.55  Aligned_cols=266  Identities=11%  Similarity=0.047  Sum_probs=132.6

Q ss_pred             hhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhc----c-cCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHH
Q psy2712          85 AGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKML----T-IEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPI  155 (602)
Q Consensus        85 ~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll----~-~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~  155 (602)
                      ....+...|..+....|....+    ...++.++..+    . .+++.+...++.++..+..  +++..+......+.+.
T Consensus        99 ~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~--~~g~~l~~~~~~il~~  176 (1207)
T d1u6gc_          99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS--RQGGLLVNFHPSILTC  176 (1207)
T ss_dssp             HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH--HTCSSCTTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH--HhhHhhHHHHHHHHHH
Confidence            3444555666666666654433    22334443333    2 2344555557887776642  1122222133456677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCC
Q psy2712         156 CQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMP  235 (602)
Q Consensus       156 Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP  235 (602)
                      |........+.--|-|+.||..+...-.           .......+..+++.+..+  .....-.+.+++||.+++..|
T Consensus       177 l~~~l~~~~~~vR~~A~~~l~~l~~~~~-----------~~~~~~~~~~ll~~l~~~--~~~~~~~~~~~~l~~l~~~~~  243 (1207)
T d1u6gc_         177 LLPQLTSPRLAVRKRTIIALGHLVMSCG-----------NIVFVDLIEHLLSELSKN--DSMSTTRTYIQCIAAISRQAG  243 (1207)
T ss_dssp             HGGGGGCSSHHHHHHHHHHHHHHTTTC---------------CTTHHHHHHHHHHHT--CSSCSCTTHHHHHHHHHHHSS
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHcc
Confidence            7666667777777888999865544322           011123444555544332  223345678999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh-hhHHHHHHHHHHHH
Q psy2712         236 NKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-ESAQKTFRMLNAVI  314 (602)
Q Consensus       236 ~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~-~~a~~v~kLL~~lL  314 (602)
                      ..|..+... +...+++-+ ...             ++++      +-.++.++-.++..+.... .....++..+...+
T Consensus       244 ~~~~~~l~~-i~~~l~~~l-~~~-------------~~~~------r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l  302 (1207)
T d1u6gc_         244 HRIGEYLEK-IIPLVVKFC-NVD-------------DDEL------REYCIQAFESFVRRCPKEVYPHVSTIINICLKYL  302 (1207)
T ss_dssp             GGGTTSCTT-HHHHHHHHH-SSC-------------CTTT------HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred             hhhHHHHHH-HHHHHHHHh-cCc-------------cHHH------HHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHH
Confidence            999988877 666665432 111             0111      2333344433333333211 12222222222111


Q ss_pred             hhcCccc-------------------CC----CCCCHHHH-HHHHHHHHHHHhhhhcccCcCCcCCH---HHHHHHHHHH
Q psy2712         315 VNKGDLL-------------------QS----DKMSKQEM-AWMRLSAGCAMLKICEQKGVGDQYSP---EQFYNLSRLL  367 (602)
Q Consensus       315 ~~~Gel~-------------------~~----~~t~~~~k-srLRL~Aa~~lLKLA~~~~~~~~I~~---~~f~~La~lv  367 (602)
                      ..+....                   ..    ......+. .++|-+|++++-.++..  +.+.+.+   +.+..|...+
T Consensus       303 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~--~~~~l~~~~~~~~~~L~~~l  380 (1207)
T d1u6gc_         303 TYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST--RHEMLPEFYKTVSPALISRF  380 (1207)
T ss_dssp             CCC------------------------------------CTTHHHHHHHHHHHHHHTT--CCTTHHHHHTTTHHHHHSTT
T ss_pred             hcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence            1100000                   00    00001122 36899999999888764  2322221   1222344456


Q ss_pred             hcCchHHHHHHHHHHHHhhcc
Q psy2712         368 IDEVPEVREIFANKLHKGLGR  388 (602)
Q Consensus       368 qD~~~~VR~~Fl~KL~k~L~~  388 (602)
                      .|....||...+..+...+..
T Consensus       381 ~d~~~~vr~~~~~~l~~l~~~  401 (1207)
T d1u6gc_         381 KEREENVKADVFHAYLSLLKQ  401 (1207)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHh
Confidence            799999999988887776643
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure