Psyllid ID: psy2733

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640----
Protein Sequence
KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVSPDQNGNTTSNTMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVSFSEDDVPLQYHLFFPDKSVPLGASLPDEDKGAATSLCQYLPGASLFCPELQVCPDGYESKESSTQNAGTNQ
Secondary Structure (PSIPRED)
ccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHccccccccccccccHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHcccccccHHHHcccccccccccccccHHHHHHcccccEEEEcccccHHHHccccccccccccHHHccccHHHHHHHHHccccccccccccccccccccEEEEcccccHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccEEEcccccccHHHHHHHccccEEEEEcccccccccccEEEccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHcccHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHcccccHccccccccccEEccccccccHHHHHHHHHHHHHHHHHcccccccccHcHEEEEccccccHHcHHHHccccHHHHHHHHHcEEEEEEEcccccccEcccccccccEEEEEccccccEEEEEccHcccEEEEEEccccccccEEEEEccccccccccccccccccHHHHHHHccccccccccccEEccccccccccccccccccc
Coil and Loop (DISEMBL)
KTLLHILAYQGCVEELNILLARGacvyypddagdtalhyaafgnkpdaiqinshvsganrsrkhiykerhrtvttekvqrpsnlpkvepetpmlnmkfiprmnedmldtpsaecsgilikQDFVLLRngcnvniqdnnqdtpmhDAVAKGFEEIQLLLLShpevnlylenskgfnILNYAVLRGNMKVTEKILALNRnlatvpktsdgftplhvACFNDHIEIVELLVEKYKVNInaldlkkrtplmaavgqGQTSVINYLMLRDVALdiqdidgngLLHFLFIKKNfyktpitreksvpiyeeylsvggpsnehGILLAVFLFLVKhgaplslennnrqkpldLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRsscqnvpvecAVCSELGVANvllkpcnhavaceECSSRMKKCIMCKTFIEMRvttdgrmvpgiercdkskIERVNYLESKISEIEEMNTCTICMERcrntiflcghgtcdvcaKTLKFCHMCRKLIEQRINISrafvspdqngnttsntMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVsfseddvplqyhlffpdksvplgaslpdedkgAATSLcqylpgaslfcpelqvcpdgyeskesstqnagtnq
Flexible Loop (DISEMBL)
KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQInshvsganrsrkhiykerhrtvttekvqrpsnlpkvepetpmLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAldlkkrtplMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLslennnrqkplDLILEDTSLLNEIMEHAREYVtdltnennKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIemrvttdgrmvpgiercdkskiervNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVSPDQNGNTTSNTMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVSFSEDDVPLQYHLFFPDKSVPLGASLPDEDKGAATSLCQYLPGASLFCPELQVCPDGyeskesstqnagtnq
Low Complexity Region (SEG)
KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVSPDQNGNTTSNTMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVSFSEDDVPLQYHLFFPDKSVPLGASLPDEDKGAATSLCQYLPGASLFCPELQVCPDGYESKESSTQNAGTNQ
Disordered region (IsUnstruct)
**LLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI************************************************************AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVSPDQNGNTTSNTMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVSFSEDDVPLQYHLFFPDKSVPLG*********AATSLCQYLPGASLFCPELQVCP*****************
Disordered Region (DISOPRED)
KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVS*********NTMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVSFSEDDVPLQYHLFFPDKSVPLGASLPDEDKGAATSLCQYLPGASLFCPELQVCP*****************
Disordered Region (DISEMBL)
KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHR************LPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVSPDQNGNTTSNTMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVSFSEDDVPLQYHLFFPDKSVPLGASLPDEDKGAATSLCQYLPGASLFCPELQVCPDG***************
Disordered Region (DISPRO)
*TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVSPDQNGNTTSNTMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVSFSEDDVPLQYHLFFPDKSVPLGASLPDEDKGAATSLCQYLPGASLFCPELQVCPDGY**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVSPDQNGNTTSNTMFHIRIQILLSDGHLGFVMQSYQRNHLTLLQVSFSEDDVPLQYHLFFPDKSVPLGASLPDEDKGAATSLCQYLPGASLFCPELQVCPDGYESKESSTQNAGTNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	644	2.2.26 [Sep-21-2011]
Q5ZIJ9	954	E3 ubiquitin-protein liga	yes	N/A	0.731	0.493	0.287	2e-61
Q96AX9	1013	E3 ubiquitin-protein liga	no	N/A	0.736	0.467	0.290	9e-57
Q8R516	973	E3 ubiquitin-protein liga	yes	N/A	0.746	0.494	0.298	1e-55
Q68LP1	971	E3 ubiquitin-protein liga	no	N/A	0.740	0.491	0.302	7e-55
Q80SY4	1006	E3 ubiquitin-protein liga	no	N/A	0.739	0.473	0.278	1e-51
Q86YT6	1006	E3 ubiquitin-protein liga	no	N/A	0.740	0.474	0.277	6e-51
Q6GNY1	1011	E3 ubiquitin-protein liga	N/A	N/A	0.739	0.470	0.272	3e-50
Q804S5	1030	E3 ubiquitin-protein liga	no	N/A	0.739	0.462	0.265	1e-48
Q9VUX2	1226	E3 ubiquitin-protein liga	yes	N/A	0.690	0.362	0.257	4e-38
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.419	0.188	0.275	1e-13

>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1

 Score =  237 bits (604), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 155/539 (28%), Positives = 266/539 (49%), Gaps = 68/539 (12%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +T L I +YQG ++ + ILL   A V   D+ GDTALHYAAFGN+ D  ++  +  +GA 
Sbjct: 466 RTALQIASYQGHLDVVKILLQAHATVNLRDEEGDTALHYAAFGNQADVARVLMAKGAGA- 524

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
                                                        D+L+        + +
Sbjct: 525 ---------------------------------------------DLLNNAKCTALYVAV 539

Query: 120 KQDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGF 174
            Q F      L    C+VN+ D++ DTP+H A+   ++ I  +L   P ++  ++N +GF
Sbjct: 540 SQGFTEVVQALCELNCDVNLPDSHGDTPLHYAITADYKVIIEILTEVPNIDFTVQNCQGF 599

Query: 175 NILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN 234
           N+L+Y+ L+GN    +KILA  R L    K  DGFT LH+A  N+H E+ E+L+++ + +
Sbjct: 600 NLLHYSALKGNKLAIKKILARARQLVD-SKKEDGFTALHLAALNNHKEVAEILIKEGRCD 658

Query: 235 INALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPIT 294
           +N  + + +TPL  A+ QG   ++  L+     ++ +D DG+  +H    ++      + 
Sbjct: 659 VNVKNNRNQTPLHLAIIQGHVGLVQLLVSEGSDVNAEDEDGDTAMHIALERQQLMSVLME 718

Query: 295 R---EKSVPIYEEYLSVGGPSN-EHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED- 349
           +   E    ++ +  + G   N E  +  A+  +L + GA ++  N+  + PLDLI +  
Sbjct: 719 KREGEMGSSLFSKLQASGFLGNVELNVGTAIACYLAQEGADINYANHRGKSPLDLITDGR 778

Query: 350 -TSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRS-SCQNVPVECAVCSEL 407
              ++ +  +  RE    ++++ + +  ++ ++      +   S S   VP EC VCSEL
Sbjct: 779 IVQIIKDFSQKFRE--QQVSSDCSAITCSLRRVHTTPNTMTNLSVSSVAVPTECLVCSEL 836

Query: 408 GVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMV---PGIERCDKSKIER 464
            +  +   PC H++ CEECS RMKKCI C+  I  ++  D   V   P  E  D+ K+  
Sbjct: 837 ALL-IHFFPCQHSIVCEECSRRMKKCIKCQVTITKKLKRDSTEVECSPSSESTDQRKL-- 893

Query: 465 VNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
           +  L+++  ++EE  TC IC++     +F CGHG+C  C+  L  C +CR+ I +RI I
Sbjct: 894 MEELQNRYRQMEERITCPICIDDQIKLVFQCGHGSCPDCSTALTVCPICRQAIRERIQI 952

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.
Gallus gallus (taxid: 9031)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3

 Score =  221 bits (564), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 156/537 (29%), Positives = 242/537 (45%), Gaps = 63/537 (11%)

Query: 1    KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
            +T L + AY G VE + +LL   A V  PDD G+TALHYAA GN+P+A ++   +S   R
Sbjct: 524  RTALQVAAYLGQVELIRLLLQARAGVDLPDDEGNTALHYAALGNQPEATRVL--LSAGCR 581

Query: 61   SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
            +                                           D +++  +    + ++
Sbjct: 582  A-------------------------------------------DAINSTQSTALHVAVQ 598

Query: 121  QDFV-----LLRNGCNVNIQDNNQDTPMHDAVAKG--FEEIQLLLLSHPEVNLYLENSKG 173
            + F+     L   GC+VN+ D + DTP+H A++ G     I  +L   P +++   NS+G
Sbjct: 599  RGFLEVVRALCERGCDVNLPDAHSDTPLHSAISAGTGASGIVEVLTEVPNIDVTATNSQG 658

Query: 174  FNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKV 233
            F +L++A L+G+     KILA  R L    K  DGFT LH+A  N+H E+ ++L+ + + 
Sbjct: 659  FTLLHHASLKGHALAVRKILARARQLVDA-KKEDGFTALHLAALNNHREVAQILIREGRC 717

Query: 234  NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPI 293
            ++N  + K ++PL  AV Q    ++  L+    +++ +D +G+  LH    +        
Sbjct: 718  DVNVRNRKLQSPLHLAVQQAHVGLVPLLVDAGCSVNAEDEEGDTALHVALQRHQLLPLVA 777

Query: 294  TREKSVPIYEEYLS----VGGP-SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILE 348
                  P   + LS     G P S E  +  AV  FL   GA +S  N+  + PLDL  E
Sbjct: 778  DGAGGDPGPLQLLSRLQASGLPGSAELTVGAAVACFLALEGADVSYTNHRGRSPLDLAAE 837

Query: 349  DTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVP--VECAVCSE 406
               L  + ++   +   +              L     +          P   EC VCSE
Sbjct: 838  GRVL--KALQGCAQRFRERQAGGGAAPGPRQTLGTPNTVTNLHVGAAPGPEAAECLVCSE 895

Query: 407  LGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVN 466
            L +  VL  PC H   CEEC+ RMKKCI C+  +  ++  DG  V           + V 
Sbjct: 896  LALL-VLFSPCQHRTVCEECARRMKKCIRCQVVVSKKLRPDGSEVASAAPAPGPPRQLVE 954

Query: 467  YLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
             L+S+  ++EE  TC IC++     +F CGHG C  C   L  C +CR+ I  RI I
Sbjct: 955  ELQSRYRQMEERITCPICIDSHIRLVFQCGHGACAPCGSALSACPICRQPIRDRIQI 1011

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2

 Score =  218 bits (555), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 159/532 (29%), Positives = 239/532 (44%), Gaps = 51/532 (9%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           +T L + AY G VE + +LL   A +  PDD G+T LHY A GN+P+A ++      A  
Sbjct: 482 RTALQVAAYLGQVELVRLLLQARASMDLPDDEGNTVLHYTAMGNQPEATRVLLSAGCAVD 541

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
           +R         T     VQR                 F+                  ++K
Sbjct: 542 ARNGTRS----TALHVAVQR----------------GFLE-----------------VVK 564

Query: 121 QDFVLLRNGCNVNIQDNNQDTPMHDAVAKGF--EEIQLLLLSHPEVNLYLENSKGFNILN 178
              +L   GC+VN+ D + DTP+H A++ G     I  +L   P +++   NS+GF +L+
Sbjct: 565 ---ILCERGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTATNSQGFTLLH 621

Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
           +A L+G++    KILA  R L    K  DGFT LH+A  N+H E+ ++L+ + + ++N  
Sbjct: 622 HASLKGHVLAVRKILARARQLVDA-KKEDGFTALHLAALNNHREVAQVLIREGRCDVNVR 680

Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKS 298
           + K ++PL  AV Q    ++  L+    +++ +D +G+  LH    +         R   
Sbjct: 681 NRKLQSPLHLAVQQAHLGLVPLLVDAGCSVNTEDEEGDTALHVALQRHQLLPLVADRAGG 740

Query: 299 VPIYEEYLS----VGGPS-NEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSL- 352
            P   + LS     G P   E  +  AV  FL   GA +S  N+  + PLDL  E   L 
Sbjct: 741 DPGPLQLLSRLQASGLPGCTELTVGAAVACFLALEGADVSYANHRGRSPLDLATEGRVLK 800

Query: 353 -LNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVAN 411
            L    +  RE               +         L    +      EC VCSEL +  
Sbjct: 801 ALQGCAQRFRERQAGGGGGVPPGPRHVLSTPNTVTNLHVSGTAGPEAAECLVCSELALL- 859

Query: 412 VLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESK 471
           +L  PC H   CEEC+ RMKKCI C+  I  ++  DG  V    +      + V  L+S+
Sbjct: 860 ILFSPCQHRTVCEECARRMKKCIRCQVVISKKLRPDGSEVVNAIQVPGPPRQLVEELQSR 919

Query: 472 ISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
             ++EE  TC IC++     +F CGHG C  C   L  C +CR+ I  RI I
Sbjct: 920 YRQMEERITCPICIDSHIRLVFQCGHGACAPCGAALNACPICRQPIRDRIQI 971

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2 SV=2

 Score =  215 bits (548), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 162/536 (30%), Positives = 241/536 (44%), Gaps = 59/536 (11%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI----NSHVS 56
           +T L + AY G VE + +LL   A V   D+ G+TALHY A GN+P+A ++       V 
Sbjct: 480 RTALQVAAYLGQVELVRLLLQARASVDLLDEEGNTALHYTAMGNQPEATRLLLSAGCGVD 539

Query: 57  GANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG 116
             N +R         T     VQR                 F+                 
Sbjct: 540 AQNGTRS--------TALHVAVQR----------------GFLE---------------- 559

Query: 117 ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGF--EEIQLLLLSHPEVNLYLENSKGF 174
            ++K   +L  +GC+VN+ D + DTP+H A++ G     I  +L   P +++   NS+GF
Sbjct: 560 -VVK---ILCEHGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTATNSQGF 615

Query: 175 NILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN 234
            +L++A L+G++    KILA  R L    K  DGFT LH+A  N+H E+ ++L+ + + +
Sbjct: 616 TLLHHASLKGHVLAVRKILARARQLVDA-KKEDGFTALHLAALNNHREVAQVLIREGRCD 674

Query: 235 INALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPIT 294
           +N  + K ++PL  AV Q    ++  L+     ++ +D +G+  LH    +         
Sbjct: 675 VNVRNRKLQSPLHLAVQQAHLGLVPLLVDAGCNVNTEDEEGDTALHVALQRHQLLPLVAD 734

Query: 295 REKSVPIYEEYLS----VGGP-SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED 349
           R    P   + LS     G P S E  +  AV  FL   GA +S  N+  + PLDL  E 
Sbjct: 735 RAGGDPGPLQLLSRLQASGLPGSTELTVGAAVACFLALEGADVSYANHRGRSPLDLATEG 794

Query: 350 TSL--LNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSEL 407
             L  L    +  RE               +         L    +      EC VCSEL
Sbjct: 795 RVLKALQGCAQRFRERQAGGGGGVPPGPRHVLSTPNTVTNLHVSGTAGPEAAECLVCSEL 854

Query: 408 GVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNY 467
            +  VL  PC H   CEEC+ RMKKCI C+  I  ++  DG  V    +      + V  
Sbjct: 855 ALL-VLFSPCQHRTVCEECARRMKKCIRCQVIISKKLRPDGSEVVNAIQVPGPPRQLVEE 913

Query: 468 LESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
           L+S+  ++EE  TC IC++     +F CGHG C  C   L  C +CR+ I  RI I
Sbjct: 914 LQSRYRQMEERITCPICIDSHIRLVFQCGHGACAPCGAALNACPICRQPIRDRIQI 969

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1

 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 162/582 (27%), Positives = 265/582 (45%), Gaps = 106/582 (18%)

Query: 2    TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
            T +   +  G V+ L +LL +   V   D  GD A+H+AAFG++   I++    S    +
Sbjct: 466  TAMQAASQNGHVDILKLLLKQNVDVEAEDKDGDRAVHHAAFGDEGAVIEVLHRGSADLNA 525

Query: 62   RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
            R             ++ Q P ++                 +N+  L          ++K 
Sbjct: 526  R------------NKRRQTPLHIA----------------VNKGHLQ---------VVK- 547

Query: 122  DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
               LL  GC+ ++QD+  DTP+HDA++K  ++I  +LL     ++ + N+ GFN L++A 
Sbjct: 548  --TLLDFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLE-AGADVTITNNNGFNALHHAA 604

Query: 182  LRGNMKVTEKILA-LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
            LRGN      +L+ L R      K  DG+T LH+A  N+H+E+ ELLV +   N++  ++
Sbjct: 605  LRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNV 664

Query: 241  KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE---- 296
             ++T L  AV +  T ++  L+     LDIQD DG+  LH         +    ++    
Sbjct: 665  NQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQLRQLQDMQDV 724

Query: 297  -KSVPIYEE-----YLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDT 350
             K    +E       + +G    E     ++  FL  +GA LS+ N   Q PLDL   D 
Sbjct: 725  GKVDAAWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLC-PDP 783

Query: 351  SLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLA---RRSS----CQNVPV---- 399
            SL   + +  +E V+      +  + +     L+E ++    +R +    C ++      
Sbjct: 784  SLCKALAKCHKEKVSGQVGSRSPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLC 843

Query: 400  ---------------------ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKT 438
                                 EC VCS+   A VL +PC H  ACE C+S MKKC+ C+ 
Sbjct: 844  SPRVKKCLICKEQVQSRTKIEECVVCSDKKAA-VLFQPCGHMCACENCASLMKKCVQCRA 902

Query: 439  FIEMRV----TTDGRM------------VPGIERCDKSKIE---RVNYLESKISEIEEMN 479
             +E RV       G+             +P +++ DK        V  L+ ++ +I+E  
Sbjct: 903  VVERRVPFITCCGGKSSEDPSDEISSGNIPVLQK-DKDNTNVNADVQKLQQQLQDIKEQT 961

Query: 480  TCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRI 521
             C +C++R +N IFLCGHGTC +C   +  C +CRK IE+RI
Sbjct: 962  MCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRI 1003

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation (By similarity). Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1

 Score =  202 bits (514), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 161/581 (27%), Positives = 261/581 (44%), Gaps = 104/581 (17%)

Query: 2    TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
            T +   +  G V+ L +LL +   V   D  GD A+H+AAFG++   I++    S    +
Sbjct: 466  TAMQAASQNGHVDILKLLLKQNVDVEAEDKDGDRAVHHAAFGDEGAVIEVLHRGSADLNA 525

Query: 62   RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
            R             ++ Q P ++                 +N+  L          ++K 
Sbjct: 526  R------------NKRRQTPLHIA----------------VNKGHLQ---------VVK- 547

Query: 122  DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
               LL  GC+ ++QD+  DTP+HDA++K  ++I  +LL     ++ + N+ GFN L++A 
Sbjct: 548  --TLLDFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLE-AGADVTITNNNGFNALHHAA 604

Query: 182  LRGNMKVTEKILA-LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
            LRGN      +L+ L R      K  DG+T LH+A  N+H+E+ ELLV +   N++  ++
Sbjct: 605  LRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNV 664

Query: 241  KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE---- 296
             ++T L  AV +  T ++  L+     LDIQD DG+  LH         +    ++    
Sbjct: 665  NQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQLRQLQDMQDV 724

Query: 297  -KSVPIYEE-----YLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDT 350
             K    +E       + +G    E     ++  FL  +GA LS+ N   Q PLDL   D 
Sbjct: 725  GKVDAAWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLC-PDP 783

Query: 351  SLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLA---RRSS----CQNVPV---- 399
            +L   + +  +E V+      +  + +     L+E ++    +R +    C ++      
Sbjct: 784  NLCKALAKCHKEKVSGQVGSRSPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLC 843

Query: 400  ---------------------ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKT 438
                                 EC VCS+   A VL +PC H  ACE C++ MKKC+ C+ 
Sbjct: 844  SPRVKKCLICKEQVQSRTKIEECVVCSDKKAA-VLFQPCGHMCACENCANLMKKCVQCRA 902

Query: 439  FIEMRV-------------TTDGRMVPGIERCDKSKIER-----VNYLESKISEIEEMNT 480
             +E RV              TD      I    K K        V  L+ ++ +I+E   
Sbjct: 903  VVERRVPFIMCCGGKSSEDATDDISSGNIPVLQKDKDNTNVNADVQKLQQQLQDIKEQTM 962

Query: 481  CTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRI 521
            C +C++R +N IFLCGHGTC +C   +  C +CRK IE+RI
Sbjct: 963  CPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRI 1003

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis (By similarity). Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1

 Score =  200 bits (508), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 159/583 (27%), Positives = 267/583 (45%), Gaps = 107/583 (18%)

Query: 2    TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
            T +   +  G V+ L +LL     V   D  GD A+H+AAFG++   I++     GA+ +
Sbjct: 466  TAMQAASQNGHVDILKLLLKHSVDVEAEDKDGDRAVHHAAFGDEGTVIEVLQR-GGADLN 524

Query: 62   RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
             ++           ++ Q P ++                 +N+  L          ++K+
Sbjct: 525  ARN-----------KRRQTPLHIA----------------VNKGHLQ---------VVKK 548

Query: 122  DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
               LL   C+ ++QD+  DTP+HDA++K  ++I  +LL     ++ + N+ GFN L++A 
Sbjct: 549  ---LLDFSCHPSLQDSEGDTPLHDAISKKRDDILAVLLE-AGADVTITNNNGFNALHHAA 604

Query: 182  LRGNMKVTEKILA-LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
            LRGN      +L+ L R      K  DG+T LH+A  N+H+E+ ELLV +   N++  ++
Sbjct: 605  LRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGSANLDIQNV 664

Query: 241  KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH------FLFIKKNFYKTPIT 294
             ++T L  AV +  T ++  L+  +  LDIQD DG+  LH       L   +        
Sbjct: 665  NQQTALHLAVERQHTQIVRLLVRAEAKLDIQDKDGDTPLHEALRHHTLSQLRQLQDMQDV 724

Query: 295  REKSVPIYEE-----YLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED 349
             +     +E       + +G    E     ++  FL  +GA L++ N   Q PLDL   D
Sbjct: 725  GKVDTTTWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGADLAVRNKKGQSPLDLC-PD 783

Query: 350  TSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLA---RRSS----CQNVPV--- 399
             +L   + +  +E  +     ++  +       L+E ++    +R +    C ++     
Sbjct: 784  PNLCKTLAKCHKEKSSGQVGSHSPSMINNDSETLEECMVCSDLKRDTLFGPCGHIATCSL 843

Query: 400  ----------------------ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCK 437
                                  EC VCS+   A VL +PC H  ACE C+S MKKC+ C+
Sbjct: 844  CSPRVKKCLLCKEQVQSRTKIEECVVCSDKKAA-VLFQPCGHMCACENCASLMKKCVQCR 902

Query: 438  TFIEMRV----------TTD------GRMVPGIERCDKSKIE---RVNYLESKISEIEEM 478
              +E RV          T D      G  +P +++ DK        V  L+ ++ +I+E 
Sbjct: 903  AVVERRVPFVMCCSGKGTEDVADDIAGGNIPALQK-DKDNTNVNADVQKLQQQLQDIKEQ 961

Query: 479  NTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRI 521
              C +C++R +N IF+CGHGTC +C   +  C +CRK IE+RI
Sbjct: 962  TMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRI 1004

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1

 Score =  195 bits (495), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 161/606 (26%), Positives = 269/606 (44%), Gaps = 130/606 (21%)

Query: 2    TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
            T +   +  G V+ L +LL     +   D  GD A+H+A+FG++   I++  H  GA+ +
Sbjct: 466  TAMQAASQNGHVDVLKLLLKHSVDLEAEDKDGDRAVHHASFGDEGSVIEV-LHRGGADLN 524

Query: 62   RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
             ++           ++ Q P ++                 +N+  L          ++K 
Sbjct: 525  ARN-----------KRRQTPLHIA----------------VNKGHLQ---------VVK- 547

Query: 122  DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
               LL  GC+ ++QD+  DTP+HDA++K  +++  +LL     ++ + N+ GFN L++A 
Sbjct: 548  --TLLDFGCHPSLQDSEGDTPLHDAISKKRDDMLSVLLE-AGADVTITNNNGFNALHHAA 604

Query: 182  LRGNMKVTEKILA-LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
            LRGN      +L+ L R      K  DG+T LH+A  N+H+E+ ELLV +   N++  ++
Sbjct: 605  LRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDVQNV 664

Query: 241  KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE-KSV 299
             ++T L  AV +  T ++  L+  +  LD+QD DG+  LH         +    ++ + V
Sbjct: 665  NQQTALHLAVERQHTQIVRLLVRAEAKLDVQDKDGDTPLHEALRHHTLSQLRQLQDMQDV 724

Query: 300  PIYEEY--------LSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTS 351
               E +        + +G    E     ++  FL  +GA L++ N   Q PLDL   D S
Sbjct: 725  SKVEPWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGADLTIRNKKGQSPLDLC-PDPS 783

Query: 352  LLNEIMEHAREYVTDLT-------NENNKVV---TAISQLALD----------------- 384
            L   + +  +E  +          N NN+ +      S +  D                 
Sbjct: 784  LCKALAKCHKEKTSGQVGSRSPSLNSNNETLEECMVCSDMKRDTLFGPCGHIATCSLCSP 843

Query: 385  --EKLLARRSSCQNVPV--ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFI 440
              +K L  +   Q+     EC VCS+   A VL +PC H  ACE C+S MKKC+ C+  +
Sbjct: 844  RVKKCLICKEQVQSRTKIEECVVCSDKKAA-VLFQPCGHMCACENCASLMKKCVQCRAVV 902

Query: 441  EMR--------------VTTDGRM----------------------------VPGIERCD 458
            E R               T D  +                            +P ++R D
Sbjct: 903  ERRTPFVLCCGGKGMEDATDDEDLTGGSNSMAGGSQDLLQPNNLALSWSSGNIPALQR-D 961

Query: 459  KSKIE---RVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRK 515
            K        V  L+ ++ +I+E   C +C++R +N IF+CGHGTC +C   +  C +CRK
Sbjct: 962  KDNTNVNADVQKLQQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRK 1021

Query: 516  LIEQRI 521
             IE+RI
Sbjct: 1022 AIERRI 1027

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intestine. Essential for early embryonic development.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster GN=mib1 PE=1 SV=3

 Score =  160 bits (404), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 147/571 (25%), Positives = 248/571 (43%), Gaps = 126/571 (22%)

Query: 2    TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
            T L   +  G +E + +LL     V   D  GD A+H+AAFG++   I+I +  +GA+ +
Sbjct: 570  TALQAASQNGHIEVIQVLLRHAVDVEIEDKDGDRAVHHAAFGDEAAVIEILAK-AGADLN 628

Query: 62   RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
             ++  ++    +   K                LN                      ++K 
Sbjct: 629  ARNKRRQTSLHIAVNKGH--------------LN----------------------VVK- 651

Query: 122  DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
               LL  GC+ ++QD+  DTP+HDA++K  +E+  LLL     ++ L N+ GFN L++A 
Sbjct: 652  --TLLTLGCHPSLQDSEGDTPLHDAISKEHDEMLSLLLDFG-ADITLNNNNGFNALHHAA 708

Query: 182  LRGNMKVTEKILA-LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
            L+GN    + +L   NR      K  DG+T LH+A  N+H+EI ELLV   K N++  ++
Sbjct: 709  LKGNPSAMKILLTKTNRPWIVEEKKDDGYTALHLAALNNHVEIAELLVHMGKANMDRQNV 768

Query: 241  KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVP 300
              +T L  AV +    ++  L+     L+I D DG+  LH     ++   + + + + V 
Sbjct: 769  NLQTALHLAVERQHVQIVKLLVQDGADLNIPDKDGDTPLHEAL--RHHTLSQLKQLQDVE 826

Query: 301  IYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHA 360
             + + L     +N      ++  FL  +GA L+L+N  +Q PLDL   D +L   +++  
Sbjct: 827  GFGKLLMGLRNANNKKASASIACFLAANGADLTLKNRKQQTPLDLC-PDPNLCKTLVKCY 885

Query: 361  REYVTDLT----------------------NENNKVVTAISQLALDEKLLARRSSC---- 394
             E  TD +                      N+++ V   +S LA      A  SS     
Sbjct: 886  NERKTDDSELPGNVAGTSSSARARAASGSLNQSSSVNMPLSSLAASSTFPAASSSSIFAL 945

Query: 395  ------------QNVPV------ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMC 436
                        ++ P       EC VCS+    + + KPC H   CE C+ R+KKC++C
Sbjct: 946  NGIANEMSQSLHEDPPKSSASLDECLVCSD-AKRDTVFKPCGHVSCCETCAPRVKKCLIC 1004

Query: 437  KTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFL-- 494
            +  +  R                                E+++ C +C +R R  +F   
Sbjct: 1005 RETVSSR--------------------------------EKIDECLVCSDR-RAAVFFRP 1031

Query: 495  CGHG-TCDVCAKTLKFCHMCRKLIEQRINIS 524
            CGH   C+ C+  +K C +CR  I++ ++ S
Sbjct: 1032 CGHMVACEHCSALMKKCVLCRTQIDEILSFS 1062

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta (Dl) and Serrate (Ser) receptors, which act as ligands of Notch proteins. Positively regulates the Notch signaling by ubiquitinating the intracellular domain of Dl and Ser, leading to endocytosis of Dl and Ser receptors. Regulates a subset of Notch signaling events, including wing margin specification, leg segmentation and vein determination, that are distinct from those events requiring neuralize (neur) activity. Also modulates lateral inhibition, a neur- and Dl-dependent signaling event, suggesting a distinct but partially complementary function with neur.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 28/298 (9%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           +TLL   AY G ++ +N+L++RGA +   D  G T L  AA   +    ++ + + G   
Sbjct: 546 RTLLANAAYSGSLDVVNLLVSRGADLEIEDAHGHTPLTLAA---RQGHTKVVNCLIGCGA 602

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSA---ECSGI 117
           +  H  ++    + +               T +++      +  D  D  S      +  
Sbjct: 603 NINHTDQDGWTALRS---------AAWGGHTEVVSALLYAGVKVDCADADSRTALRAAAW 653

Query: 118 LIKQDFVL--LRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGF 174
              +D VL  L++G  VN  DN   T +  A   G  EI   LL H  EVN   E+  G 
Sbjct: 654 GGHEDIVLNLLQHGAEVNKADNEGRTALIAAAYMGHREIVEHLLDHGAEVNH--EDVDGR 711

Query: 175 NILNYAVL-----RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
             L+ A L     +G+  V    L ++R         DG TPL VA +  H+++V+LL+E
Sbjct: 712 TALSVAALCVPASKGHASVVS--LLIDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDLLLE 769

Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN 287
               +++  D   RTPL+AA   G  SV+N L+    A+D  D +G  +L     + N
Sbjct: 770 G-GADVDHTDNNGRTPLLAAASMGHASVVNTLLFWGAAVDSIDSEGRTVLSIASAQGN 826

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	644
242021591	945	ubiquitin ligase protein MIB2, putative	0.736	0.501	0.356	2e-79
391326093	942	PREDICTED: E3 ubiquitin-protein ligase M	0.731	0.5	0.332	1e-68
242276482	996	skeletrophin, putative [Ixodes scapulari	0.690	0.446	0.334	5e-68
183986655	951	mindbomb E3 ubiquitin protein ligase 2 [	0.731	0.495	0.304	9e-63
189217724	916	uncharacterized protein LOC100158387 [Xe	0.734	0.516	0.290	3e-61
410899010	959	PREDICTED: E3 ubiquitin-protein ligase M	0.722	0.484	0.297	4e-61
432864376	1049	PREDICTED: E3 ubiquitin-protein ligase M	0.725	0.445	0.296	4e-61
326932344	744	PREDICTED: e3 ubiquitin-protein ligase M	0.729	0.631	0.290	3e-60
57529411	954	E3 ubiquitin-protein ligase MIB2 [Gallus	0.731	0.493	0.287	2e-59
449486907	954	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.734	0.495	0.283	2e-58

>gi|242021591|ref|XP_002431228.1| ubiquitin ligase protein MIB2, putative [Pediculus humanus corporis] gi|212516477|gb|EEB18490.1| ubiquitin ligase protein MIB2, putative [Pediculus humanus corporis]

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 286/527 (54%), Gaps = 53/527 (10%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
           KT L +  +QG  E +  L+  GA +   D  GDTALHY+AFG++ + + I   H +  N
Sbjct: 467 KTCLQVACHQGHKEIVQFLIESGADLLIADQDGDTALHYSAFGDQAEVMDILLRHGAEIN 526

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
              + +    H  V  + VQ                                       +
Sbjct: 527 SLNRGLCSALHIAVNKQHVQ--------------------------------------CV 548

Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
           ++   LL+  CNVNIQD+  DT +HDA+ K   EI  LL S+  V+  L+N++GFN+L+ 
Sbjct: 549 RK---LLQYKCNVNIQDSYGDTALHDAIGKDNVEITDLLCSYQGVDFTLKNNRGFNVLHQ 605

Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
           A L+GN   TEK+L+  R L  V K  DGF  LH+AC N H  + E L+ + + +IN  +
Sbjct: 606 AALKGNNVATEKLLSKTRQLVDVKK-DDGFAALHLACLNGHKMVAETLLIQGQADINLQN 664

Query: 240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSV 299
            +K+T L+ A  QG+ S++  L+     + + D D    LH + +K+    + I   +S 
Sbjct: 665 NRKQTSLLLAASQGRCSIVELLISMKADIHVVDEDKETALHLVLLKRGSINSEIVELESP 724

Query: 300 PIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEH 359
            IY  +  +    +EH I +A+  +LV  G  L+L+N+  + PLDL+ ED S+   I   
Sbjct: 725 KIYGIHAQIVDLVSEHSIAIAIACYLVLEGCSLTLQNSRGKTPLDLV-EDKSVQVLI--- 780

Query: 360 AREYVT-DLTNENNKVVTAISQLALDEKLLARRSSCQN--VPVECAVCSELGVANVLLKP 416
            + YVT     E+  ++ + ++ + +E    + +  +N   PVEC+VCSE+   NVL +P
Sbjct: 781 -QSYVTLKKMREDAAILNSSTRNSSEESSNEQSNKNENHYSPVECSVCSEIADQNVLFEP 839

Query: 417 CNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIE 476
           C H +ACE+C+SR+KKC+ C   I  R++ DG+++P   R  +   +R+ YLE+KI EIE
Sbjct: 840 CGHKIACEDCASRVKKCLKCGCLISKRISVDGKIIPCKSR--QPSADRLRYLETKIQEIE 897

Query: 477 EMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
           E   CTICMER RN  FLCGH TC+ C+ TLK C MCRK I ++IN+
Sbjct: 898 ESLDCTICMERNRNVAFLCGHRTCEECSLTLKVCPMCRKTITKKINL 944

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391326093|ref|XP_003737559.1| PREDICTED: E3 ubiquitin-protein ligase MIB2-like [Metaseiulus occidentalis]

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 176/529 (33%), Positives = 269/529 (50%), Gaps = 58/529 (10%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           KT L +  +QG    ++ILL   A +   D+ GDTALHYAAFGN+P  I+     SGAN 
Sbjct: 464 KTALQVACHQGHHAIVDILLRSKANLEAHDEDGDTALHYAAFGNQPKVIE-TLLASGANI 522

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
           + +                   N  K  P    +N ++             ++C  +L++
Sbjct: 523 NAQ-------------------NRTKCTPLHVAVNKQY-------------SDCVKVLLR 550

Query: 121 QDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYA 180
                + +  ++N+QD+  DT +HDA++K    I  LL++ P V+  L N +GFN+L++A
Sbjct: 551 PQSHSV-HALDINVQDSYGDTALHDAISKESVGITDLLINVPSVDFSLRNERGFNVLHHA 609

Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
            L+GN    EK+LA  R L  + K  DGF  LH+A  N H  +VELL+E  + + +  + 
Sbjct: 610 ALKGNAFAVEKLLARTRQLVDI-KKEDGFAALHLAALNGHFAVVELLLEVGRCDTDIRNN 668

Query: 241 KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYK-TPITREKSV 299
           +++TPL+ AV QG  +++  L+     +++QD DG+  LH   +K++  + T +      
Sbjct: 669 RQQTPLLLAVSQGHEAIVERLLASGAGVNVQDEDGDTPLHVALVKRSALRGTELVETSDA 728

Query: 300 PIYEEYLSVGGPS-----NEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLN 354
           P   + L+    S      + G+L+A FL   K G+ L  EN+ ++ PL L     +   
Sbjct: 729 PGMAQILATLATSPLDAIEDKGLLIACFL--AKEGSDLLKENHAKRTPLSL-----AGST 781

Query: 355 EIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLL 414
           E+ E  R +       N+ +  A    AL + L+      +    EC +C E   A V  
Sbjct: 782 EVEELLRFWAA-----NSDIQPASPSTALSDALVVLHMEQK----ECEICLE-APAVVKF 831

Query: 415 KPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISE 474
            PC H VACEEC  RMKKCI C+  +  +   +        R  +  +ER+  LES++ E
Sbjct: 832 MPCGHCVACEECCVRMKKCITCQQIVACKTNKNTGATILSSRQRQGSLERLRQLESRLQE 891

Query: 475 IEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
           +EE  +C+ICMER RN  FLCGH  C  CA  LK CHMCRK I +RI +
Sbjct: 892 MEESASCSICMERKRNVAFLCGHAACAKCAAPLKTCHMCRKPITKRIQL 940

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242276482|ref|XP_002404176.2| skeletrophin, putative [Ixodes scapularis] gi|215491507|gb|EEC01148.1| skeletrophin, putative [Ixodes scapularis]

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 267/529 (50%), Gaps = 84/529 (15%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKP----DAIQINSHVS 56
           KT L + ++QG  E + +LL   A V   DD GDTALHYAAFGN+P      ++  +HV+
Sbjct: 541 KTALQVASHQGHQEIVELLLQCAASVEAQDDDGDTALHYAAFGNQPVIMEQLLKAGAHVN 600

Query: 57  GANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG 116
             N+++       H  V  +                                   A C  
Sbjct: 601 AVNKAK---CTALHVAVNKQH----------------------------------ANCVR 623

Query: 117 ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI 176
           +L+K   +L          D+  DT +HDA+ K   EI  LL++ PEV+  L+N +GFN+
Sbjct: 624 VLLKFRSIL---------NDSYGDTALHDAIGKDNLEIIDLLINVPEVDFSLKNKRGFNV 674

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           L++A L+GN   TE++L+  R +  + K  DGF  LH+A  N H  +VE L+ + +   +
Sbjct: 675 LHHAALKGNNFATERLLSRTRQIVDI-KKDDGFAALHLAALNGHFLVVETLLIQGQCEAD 733

Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVA-LDIQDIDGNGLLHFLFIKKNFYKTPITR 295
             + +K+TPL+ AV QG  ++   L+    A ++ +D D +  LH   IK++  +     
Sbjct: 734 VRNNRKQTPLLLAVSQGHCAIAELLLGAGGAQVNAEDEDADTALHLALIKRSAIRPQDLD 793

Query: 296 EKSVPIYEEYLSVGG--PSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLL 353
               P+     S  G  P  E    LA+  FL K GA L+  N   + PLD  L  + ++
Sbjct: 794 PAEAPVIAGIASQLGSSPLPEVDGTLALACFLAKEGADLNKSNLVGRTPLD--LAGSPIV 851

Query: 354 NEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVP-VECAVCSELGVANV 412
            ++++H + +                      K  A  +  + VP  EC +C E  +A V
Sbjct: 852 ADLLQHWKAH----------------------KEWA--APVEVVPGSECQICLE-ALATV 886

Query: 413 LLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKI 472
           + +PC H VACEEC SRMKKC+ C+  I  +    G+  P + R  ++ +ER+ YLESK+
Sbjct: 887 VFEPCGHRVACEECCSRMKKCLSCQQIIVKKTDPAGK--PLMSRARQASLERLRYLESKV 944

Query: 473 SEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRI 521
            E+EE   C+ICMER RN  FLCGHG C +CA+TL+ CHMCRK I ++I
Sbjct: 945 QEMEESQGCSICMERRRNVAFLCGHGACALCAQTLRTCHMCRKAIAKKI 993

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183986655|ref|NP_001116916.1| mindbomb E3 ubiquitin protein ligase 2 [Xenopus (Silurana) tropicalis] gi|170284530|gb|AAI61083.1| mib2 protein [Xenopus (Silurana) tropicalis]

 Score =  248 bits (632), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 163/536 (30%), Positives = 272/536 (50%), Gaps = 65/536 (12%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           +T L + ++ G +E + +LL   A +   DD GDTALHYAA+GN+   +++     GAN 
Sbjct: 466 RTALQVASHLGYMEVVKVLLQANANIDLRDDEGDTALHYAAYGNQAGVVRV-LLSKGAN- 523

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG--IL 118
                                           +LN               +A+C+   I 
Sbjct: 524 ------------------------------AELLN---------------NAKCTALYIA 538

Query: 119 IKQDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKG 173
           + + F     VL    C +N+QD+  DTP+H A+   F  I  +L   P ++  ++N++G
Sbjct: 539 VNKGFTEVVQVLCNPNCAINMQDSFGDTPLHYAITADFRSIIEILTEVPNIDFTVQNNQG 598

Query: 174 FNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKV 233
           FN+L+++ L+GN+    KIL   R L    K  DGFT LH+A  N+H E+VE+L+++ + 
Sbjct: 599 FNLLHHSALKGNVLAVSKILERARQLVD-SKKEDGFTALHLATLNNHQEVVEILIKEGRC 657

Query: 234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPI 293
           ++N  + + +TPL  AV QG  S+++ L+     ++ +D DG+  +H +F++++      
Sbjct: 658 DVNLRNNRNQTPLHLAVAQGHISLVHLLVTEGADVNAEDEDGDTPMHIVFVRQHLKSIDS 717

Query: 294 TREKSVPIYEEYLSVGG-PSN-EHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTS 351
            +E +       L   G P N E  +  A+  FL   GA ++  N+  + PLDLI  D  
Sbjct: 718 QQEGNGSSLLTKLEASGLPGNIELNVGSAMACFLALSGADINYANHRGKSPLDLI-ADGR 776

Query: 352 LLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNV-PVECAVCSELGVA 410
           + + +   A+++   +  ++  V  ++ ++      +   S C    P EC VCSEL V 
Sbjct: 777 ITHLVKNFAQKFREQVELDSPTVSCSLRRVHTTPNTMTNLSPCSAASPAECLVCSELAVL 836

Query: 411 NVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMV---PGIERCDKSKIERVNY 467
            V   PC H++ CEECS RMKKCI C+  I  ++  D   V   P +E  D+ K+  +  
Sbjct: 837 -VSFFPCQHSIVCEECSRRMKKCIKCQVCIARKLRQDSTEVECSPSLEVSDQKKV--MEE 893

Query: 468 LESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
           L+++  ++EE  TC IC++     +F CGHG+C  C+ +L  C +CR+LI +RI I
Sbjct: 894 LQNRYRQMEERITCPICIDNHIKLVFQCGHGSCTECSTSLTACPICRQLIRERIQI 949

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|189217724|ref|NP_001121303.1| uncharacterized protein LOC100158387 [Xenopus laevis] gi|115528808|gb|AAI24958.1| LOC100158387 protein [Xenopus laevis]

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 270/534 (50%), Gaps = 61/534 (11%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           +T L + ++ G +E + +LL   A +   DD GDTALHYAA+GN+   +++         
Sbjct: 431 RTALQVASHLGYMEVVKVLLQANANIDLKDDEGDTALHYAAYGNQAGVVRV--------- 481

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
                                                     N ++L+        I + 
Sbjct: 482 ------------------------------------LLAKGTNAELLNNAKCTALYIAVN 505

Query: 121 QDFV-LLRNGCN----VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFN 175
           + F  +++  CN    +N+QD+  DTP+H A+   F  I  +L   P ++  ++N++GFN
Sbjct: 506 KGFTEVVQVLCNPNGAINMQDSFGDTPLHYAITADFRSIIEILTEVPNIDFTVQNNQGFN 565

Query: 176 ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
           +L+++ L+GN+    KIL   R L    K  DGFT LH+A  N+H E+VE+L+++ + ++
Sbjct: 566 LLHHSTLKGNVLAVRKILERARQLVD-SKKEDGFTALHLATLNNHQEVVEILIKEGRCDV 624

Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITR 295
           N  + + +TPL  AV QG  S+++ L+     ++ +D DG+  +H +F++++       +
Sbjct: 625 NLRNNRNQTPLHLAVAQGHISLVHLLVTEGANVNAEDEDGDTPMHIVFVRQHLKSLESQQ 684

Query: 296 EKSVPIYEEYLSVGG-PSN-EHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLL 353
           E S       L   G P N E  +  A+  FL   GA ++  N+  + PLDLI  D  + 
Sbjct: 685 EGSGSSLLTKLEASGLPGNIELNVGSAMACFLALSGADINYANHRGKSPLDLIT-DGRIT 743

Query: 354 NEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRS-SCQNVPVECAVCSELGVANV 412
           + +   A+++   + +++  +  ++ ++      +   S S    P EC VCSEL V  +
Sbjct: 744 HLVKNFAQKFREQVESDSPAISCSLRRVHTTPNTMTNLSPSSATSPGECLVCSELAVL-I 802

Query: 413 LLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMV---PGIERCDKSKIERVNYLE 469
              PC H++ CEECS RMKKCI C+  I  ++  D   V   P +E  D+ KI  +  L+
Sbjct: 803 SFFPCQHSIVCEECSRRMKKCIKCQVSISKKLRQDSTEVECSPSLELSDQKKI--MEELQ 860

Query: 470 SKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
           ++  ++EE  TC IC++     +F CGHG+C  C+ ++  C +CR++I++RI I
Sbjct: 861 NRYRQMEERITCPICIDNHIKLVFQCGHGSCTECSASITACPICRQVIKERIQI 914

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410899010|ref|XP_003962990.1| PREDICTED: E3 ubiquitin-protein ligase MIB2-like [Takifugu rubripes]

 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 166/558 (29%), Positives = 263/558 (47%), Gaps = 93/558 (16%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           KT L + A+QG +E +  LL     +   D+ GDTALHY AFGN                
Sbjct: 458 KTALQVAAHQGHMEVVKALLQANGSIETKDEDGDTALHYTAFGN---------------- 501

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
                                        +  +  +      N ++L+        I + 
Sbjct: 502 -----------------------------QAEIARLLLSKGANVNILNNSMCTALHIAVN 532

Query: 121 QDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFN 175
           + F     +L  +  +VN+QD+  DTP+HDA+AK F  I  +L+  P ++   +N +GFN
Sbjct: 533 KGFTDLVRLLTEHSADVNLQDSYGDTPLHDAIAKDFRSIIEILVLVPNIDFTQQNHRGFN 592

Query: 176 ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
           +L++A L+GN   TEKILA  R L  V K  DGF+ LH+A  N+H ++ E+L+++ + +I
Sbjct: 593 LLHHAALKGNKLATEKILARARQLVDVKK-EDGFSALHLAALNNHRDVAEILIKEGRCDI 651

Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKK---NFYKTP 292
           N  + + +TPL  AV QG T ++  L+     ++++D DG+  +H   +++   N   +P
Sbjct: 652 NIRNNRNQTPLQLAVTQGHTELVQLLVAEGADVNMEDEDGDTAMHVALLRQQLANVMLSP 711

Query: 293 ITREKSVPIYEE---------YLSVGG--PSNEHGILLAVFLFLVKHGAPLSLENNNRQK 341
                S     E          L+  G   +NE  +  A+  FL + GA ++  N+  + 
Sbjct: 712 TVGTSSADDGSEGCSSTSLHCRLNTAGLLGNNEISVGAAIACFLAQEGADINYANHKGKS 771

Query: 342 PLDLILEDTS--LLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNV-- 397
           PLDL+ + T+  LL    E  R           ++        L    L R  +  N   
Sbjct: 772 PLDLVADSTTVQLLKNFSEQHRL---------QRLQAITCGQGLSGASLRRVHTTPNTMT 822

Query: 398 ---------PVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDG 448
                    P EC +CSEL +  VL  PC H+VACEEC+ RMKKCI C+  I  ++  D 
Sbjct: 823 NLVLPTPPGPSECLICSELALL-VLFCPCQHSVACEECAHRMKKCIKCQVTITKKIRQDQ 881

Query: 449 RMV---PGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAK 505
             V   PG E  ++  +  +  L+S+  ++EE  TC IC++     +F CGH +C  C+ 
Sbjct: 882 TEVDCSPGTENSEQHNL--LEQLQSRYRQMEERITCPICIDNHIKLVFQCGHASCIECSA 939

Query: 506 TLKFCHMCRKLIEQRINI 523
            LK C +CR+ I +RI +
Sbjct: 940 ALKTCPICRQTIRERIQL 957

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432864376|ref|XP_004070291.1| PREDICTED: E3 ubiquitin-protein ligase MIB2-like [Oryzias latipes]

 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 165/556 (29%), Positives = 259/556 (46%), Gaps = 89/556 (16%)

Query: 1    KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
            KT L + A+QG +E +  LL     V   D+ GDTALHYAAFGN                
Sbjct: 548  KTALQVAAHQGHMEVVKALLQANCSVEVKDEDGDTALHYAAFGN---------------- 591

Query: 61   SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
                                         +  +  +      N ++L+        I + 
Sbjct: 592  -----------------------------QAEIARLLLSKGANVNLLNNSMCTALHIAVN 622

Query: 121  QDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFN 175
            + F     VL  +  +VN+QD+  DTP+HDA+AK F  I  +L+  P ++   +N +GFN
Sbjct: 623  KGFTDVVRVLTEHSADVNLQDSYGDTPLHDAIAKDFRSIIEMLVVVPSIDFTQQNHRGFN 682

Query: 176  ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
            +L++A L+GN   TEKILA  R L  V K  DGF+ LH+A  N+H ++ E+LV++ + +I
Sbjct: 683  LLHHAALKGNKLATEKILARARQLVDV-KKDDGFSALHLAALNNHRDVAEVLVKEGRCDI 741

Query: 236  NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITR 295
            N  + + +T L  AV QG T ++  L+     ++++D DG+  +H   ++       ++ 
Sbjct: 742  NVRNNRNQTALQLAVTQGHTELVQLLVDEGADVNMEDEDGDTAMHVALLRPQLANVMLSP 801

Query: 296  EKSVPIYEEYLSVGGPSNEHGIL--------------LAVFLFLVKHGAPLSLENNNRQK 341
                   E+      P+  HG L               A+  FL + GA ++  N+  + 
Sbjct: 802  AVGTGATEDNSEGCSPTTLHGRLSSSGLLGNGELSVGTAIACFLAQEGADINYANHKGKS 861

Query: 342  PLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNV---- 397
            PLDL L D+  L  I   + ++         ++        L    L R  +  N     
Sbjct: 862  PLDL-LADSGALQLIKSFSEKHRL------QRLQAITCGQGLSSASLRRVHTTPNTMTNL 914

Query: 398  -------PVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRM 450
                   P EC +CSEL +  VL  PC H+VACEEC+ RMKKCI C+  I  ++  D   
Sbjct: 915  VLPTPPGPSECLICSELALL-VLFCPCQHSVACEECAHRMKKCIKCQVTITKKIRQDQTE 973

Query: 451  V---PGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTL 507
            V   PG E  ++  +  +  L+S+  ++EE  TC IC++     +F CGH +C  C+  L
Sbjct: 974  VDCSPGTENSEQHNL--LEQLQSRYRQMEERITCPICIDNHIKLVFQCGHASCIECSAAL 1031

Query: 508  KFCHMCRKLIEQRINI 523
            K C +CR+ I +RI +
Sbjct: 1032 KTCPICRQTIRERIQL 1047

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326932344|ref|XP_003212279.1| PREDICTED: e3 ubiquitin-protein ligase MIB2-like [Meleagris gallopavo]

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/540 (29%), Positives = 268/540 (49%), Gaps = 70/540 (12%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           +T L I +YQG ++ + ILL   A V   D+ GDTALHYAAFGN+ D  ++         
Sbjct: 256 RTALQIASYQGHLDVVKILLQAHAAVNLRDEEGDTALHYAAFGNQADVARV--------- 306

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG--IL 118
                                  L     +  +LN               +A+C+   + 
Sbjct: 307 -----------------------LIAKGADADLLN---------------NAKCTALYVA 328

Query: 119 IKQDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKG 173
           + Q F      L    C+VN+ D++ DTP+H A+   ++ I  +L   P ++  ++N +G
Sbjct: 329 VSQGFTEVVQALCELNCDVNLPDSHGDTPLHYAITADYKVIIEILTEVPNIDFTVQNCQG 388

Query: 174 FNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKV 233
           FN+L+Y+ L+GN    +KILA  R L    K  DGFT LH+A  N+H E+ E+L+++ + 
Sbjct: 389 FNLLHYSALKGNKLAIKKILARARQLVD-SKKEDGFTALHLAALNNHKEVAEILIKEGRC 447

Query: 234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPI 293
           ++N  + + +TPL  A+ QG   ++  L+     ++ +D DG+  +H    ++      +
Sbjct: 448 DVNVKNSRNQTPLHLAIIQGHVGLVQLLVSEGSDVNAEDEDGDTAMHIALERQQLMSVLM 507

Query: 294 TR---EKSVPIYEEYLSVGGPSN-EHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED 349
            +   E    ++ +  + G   N E  +  A+  +L + GA ++  N+  + PLDLI + 
Sbjct: 508 EKREGEMGSSLFSKLQASGFLGNIELNVGTAIACYLAQEGADINYANHRGKSPLDLITDG 567

Query: 350 --TSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRS-SCQNVPVECAVCSE 406
               ++ +  +  RE    +T++ + +  ++ ++      +   S S   VP EC VCSE
Sbjct: 568 RIVQIIKDFSQKFRE--QQVTSDCSAITCSLRRVHTTPNTMTNLSVSSVAVPTECLVCSE 625

Query: 407 LGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMV---PGIERCDKSKIE 463
           L +  +   PC H++ CEECS RMKKCI C+  I  ++  D   V   P  E  D+ K+ 
Sbjct: 626 LALL-IHFFPCQHSIVCEECSRRMKKCIKCQVTITKKLKQDSTEVECSPSSESTDQRKL- 683

Query: 464 RVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
            +  L+++  ++EE  TC IC++     +F CGHG+C  C+  L  C +CR+ I +RI I
Sbjct: 684 -MEELQNRYRQMEERITCPICIDDQIKLVFQCGHGSCPDCSTALTVCPICRQAIRERIQI 742

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|57529411|ref|NP_001006301.1| E3 ubiquitin-protein ligase MIB2 [Gallus gallus] gi|68565462|sp|Q5ZIJ9.1|MIB2_CHICK RecName: Full=E3 ubiquitin-protein ligase MIB2; AltName: Full=Mind bomb homolog 2 gi|53135643|emb|CAG32444.1| hypothetical protein RCJMB04_25j24 [Gallus gallus]

 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 155/539 (28%), Positives = 266/539 (49%), Gaps = 68/539 (12%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +T L I +YQG ++ + ILL   A V   D+ GDTALHYAAFGN+ D  ++  +  +GA 
Sbjct: 466 RTALQIASYQGHLDVVKILLQAHATVNLRDEEGDTALHYAAFGNQADVARVLMAKGAGA- 524

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
                                                        D+L+        + +
Sbjct: 525 ---------------------------------------------DLLNNAKCTALYVAV 539

Query: 120 KQDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGF 174
            Q F      L    C+VN+ D++ DTP+H A+   ++ I  +L   P ++  ++N +GF
Sbjct: 540 SQGFTEVVQALCELNCDVNLPDSHGDTPLHYAITADYKVIIEILTEVPNIDFTVQNCQGF 599

Query: 175 NILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN 234
           N+L+Y+ L+GN    +KILA  R L    K  DGFT LH+A  N+H E+ E+L+++ + +
Sbjct: 600 NLLHYSALKGNKLAIKKILARARQLVD-SKKEDGFTALHLAALNNHKEVAEILIKEGRCD 658

Query: 235 INALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPIT 294
           +N  + + +TPL  A+ QG   ++  L+     ++ +D DG+  +H    ++      + 
Sbjct: 659 VNVKNNRNQTPLHLAIIQGHVGLVQLLVSEGSDVNAEDEDGDTAMHIALERQQLMSVLME 718

Query: 295 R---EKSVPIYEEYLSVGGPSN-EHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED- 349
           +   E    ++ +  + G   N E  +  A+  +L + GA ++  N+  + PLDLI +  
Sbjct: 719 KREGEMGSSLFSKLQASGFLGNVELNVGTAIACYLAQEGADINYANHRGKSPLDLITDGR 778

Query: 350 -TSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRS-SCQNVPVECAVCSEL 407
              ++ +  +  RE    ++++ + +  ++ ++      +   S S   VP EC VCSEL
Sbjct: 779 IVQIIKDFSQKFRE--QQVSSDCSAITCSLRRVHTTPNTMTNLSVSSVAVPTECLVCSEL 836

Query: 408 GVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMV---PGIERCDKSKIER 464
            +  +   PC H++ CEECS RMKKCI C+  I  ++  D   V   P  E  D+ K+  
Sbjct: 837 ALL-IHFFPCQHSIVCEECSRRMKKCIKCQVTITKKLKRDSTEVECSPSSESTDQRKL-- 893

Query: 465 VNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
           +  L+++  ++EE  TC IC++     +F CGHG+C  C+  L  C +CR+ I +RI I
Sbjct: 894 MEELQNRYRQMEERITCPICIDDQIKLVFQCGHGSCPDCSTALTVCPICRQAIRERIQI 952

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449486907|ref|XP_004174809.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase MIB2 [Taeniopygia guttata]

 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/537 (28%), Positives = 262/537 (48%), Gaps = 64/537 (11%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           +T L I +YQG +E +  LL   A V   DD GDTALHYAAFGN+ +  ++         
Sbjct: 466 RTALQIASYQGHLEVVKTLLQAHANVDLRDDEGDTALHYAAFGNQAEVARV--------- 516

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
                                                     + D+L+        + + 
Sbjct: 517 ------------------------------------LLAKGASADLLNNAKCTALYVAVS 540

Query: 121 QDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFN 175
           Q F      L    C+VN+ D+  DTP+H A+   ++ +  +L   P ++  ++N +GFN
Sbjct: 541 QGFTEVVRALCELNCDVNLPDSQGDTPLHYAITLDYKVLIEILTEVPNIDFTVQNCQGFN 600

Query: 176 ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
           +L+YA L+GN    +KILA  R L    K  DGFT LH+A  N+H+E+ E+L+++ +  +
Sbjct: 601 LLHYAALKGNKLAIKKILARARQLVD-SKKEDGFTALHLAALNNHMEVAEILIKEGRCEL 659

Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITR 295
           N  + ++++PL  AV QG   ++  L+     ++ +D DG+  +H    ++      + +
Sbjct: 660 NVRNSRRQSPLHLAVIQGHVGMVQLLVRHGSDVNAEDEDGDTAMHMALERQQLMGLALQK 719

Query: 296 ---EKSVPIYEEYLSVGGPSN-EHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTS 351
              +    +  +  + G   N E  +  A+  +L + GA ++  N+  + PLDLI  D  
Sbjct: 720 RDGDMGAALLAKLQASGFLGNVELNVGTAIACYLAQEGADINYANHRGKSPLDLIT-DGR 778

Query: 352 LLNEIMEHAREYVTDLTNENNKVVT-AISQLALDEKLLARRS-SCQNVPVECAVCSELGV 409
           ++  + + ++++     + ++  +T ++ ++      +   S S   VP EC VCSEL +
Sbjct: 779 IVQIVKDFSQKFRDQQVSSDSSTITCSLRRVHTTPNTMTNLSVSSVAVPTECLVCSELAL 838

Query: 410 ANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMV---PGIERCDKSKIERVN 466
             +   PC H++ CEECS RMKKCI C+  I  ++  D   V   P  E  ++ K+  + 
Sbjct: 839 L-IHFFPCQHSIVCEECSRRMKKCIKCQVTITKKLKQDSTEVQCSPSSEGTEQRKL--ME 895

Query: 467 YLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
            L+S+  ++EE  TC IC++     +F CGHG+C  C+  L  C  CR+ I +RI+I
Sbjct: 896 ELQSRYRQMEERITCPICIDDQIKLVFQCGHGSCPDCSTALTVCPXCRQAIRERIHI 952

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	644
UNIPROTKB|F1NSA9	954	MIB2 "E3 ubiquitin-protein lig	0.638	0.430	0.298	8.4e-66
UNIPROTKB|Q5ZIJ9	954	MIB2 "E3 ubiquitin-protein lig	0.638	0.430	0.298	8.4e-66
UNIPROTKB|E1BU56	956	MIB2 "E3 ubiquitin-protein lig	0.638	0.429	0.298	8.6e-66
ZFIN|ZDB-GENE-050628-1	999	mib2 "mind bomb 2" [Danio reri	0.614	0.396	0.323	5.1e-58
FB|FBgn0086442	1049	mib2 "mind bomb 2" [Drosophila	0.330	0.203	0.344	3.6e-57
UNIPROTKB|D4A3U6	948	LOC474147 "Protein LOC474147"	0.616	0.418	0.319	3.1e-48
RGD|1359469	971	Mib2 "mindbomb E3 ubiquitin pr	0.616	0.408	0.319	3.4e-48
UNIPROTKB|Q68LP1	971	Mib2 "E3 ubiquitin-protein lig	0.616	0.408	0.319	3.4e-48
MGI|MGI:2679684	973	Mib2 "mindbomb homolog 2 (Dros	0.616	0.408	0.314	9.3e-48
UNIPROTKB|H0YAM8	829	MIB2 "E3 ubiquitin-protein lig	0.610	0.474	0.302	2.7e-47

UNIPROTKB|F1NSA9 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)]

 Score = 578 (208.5 bits), Expect = 8.4e-66, Sum P(2) = 8.4e-66
 Identities = 130/436 (29%), Positives = 233/436 (53%)

Query:   105 DMLDTPSAECSG--ILIKQDFV-----LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL 157
             D+L+  +A+C+   + + Q F      L    C+VN+ D++ DTP+H A+   ++ I  +
Sbjct:   525 DLLN--NAKCTALYVAVSQGFTEVVQALCELNCDVNLPDSHGDTPLHYAITADYKVIIEI 582

Query:   158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACF 217
             L   P ++  ++N +GFN+L+Y+ L+GN    +KILA  R L    K  DGFT LH+A  
Sbjct:   583 LTEVPNIDFTVQNCQGFNLLHYSALKGNKLAIKKILARARQLVD-SKKEDGFTALHLAAL 641

Query:   218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
             N+H E+ E+L+++ + ++N  + + +TPL  A+ QG   ++  L+     ++ +D DG+ 
Sbjct:   642 NNHKEVAEILIKEGRCDVNVKNNRNQTPLHLAIIQGHVGLVQLLVSEGSDVNAEDEDGDT 701

Query:   278 LLHFLFIKKNFYKTPITR---EKSVPIYEEYLSVGGPSN-EHGILLAVFLFLVKHGAPLS 333
              +H    ++      + +   E    ++ +  + G   N E  +  A+  +L + GA ++
Sbjct:   702 AMHIALERQQLMSVLMEKREGEMGSSLFSKLQASGFLGNVELNVGTAIACYLAQEGADIN 761

Query:   334 LENNNRQKPLDLILED--TSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARR 391
               N+  + PLDLI +     ++ +  +  RE    ++++ + +  ++ ++      +   
Sbjct:   762 YANHRGKSPLDLITDGRIVQIIKDFSQKFREQ--QVSSDCSAITCSLRRVHTTPNTMTNL 819

Query:   392 S-SCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRM 450
             S S   VP EC VCSEL +  +   PC H++ CEECS RMKKCI C+  I  ++  D   
Sbjct:   820 SVSSVAVPTECLVCSELALL-IHFFPCQHSIVCEECSRRMKKCIKCQVTITKKLKQDSTE 878

Query:   451 V---PGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTL 507
             V   P  E  D+ K+  +  L+++  ++EE  TC IC++     +F CGHG+C  C+  L
Sbjct:   879 VECSPSSESTDQRKL--MEELQNRYRQMEERITCPICIDDQIKLVFQCGHGSCPDCSTAL 936

Query:   508 KFCHMCRKLIEQRINI 523
               C +CR+ I +RI I
Sbjct:   937 TVCPICRQAIRERIQI 952

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5ZIJ9 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)]

 Score = 578 (208.5 bits), Expect = 8.4e-66, Sum P(2) = 8.4e-66
 Identities = 130/436 (29%), Positives = 233/436 (53%)

Query:   105 DMLDTPSAECSG--ILIKQDFV-----LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL 157
             D+L+  +A+C+   + + Q F      L    C+VN+ D++ DTP+H A+   ++ I  +
Sbjct:   525 DLLN--NAKCTALYVAVSQGFTEVVQALCELNCDVNLPDSHGDTPLHYAITADYKVIIEI 582

Query:   158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACF 217
             L   P ++  ++N +GFN+L+Y+ L+GN    +KILA  R L    K  DGFT LH+A  
Sbjct:   583 LTEVPNIDFTVQNCQGFNLLHYSALKGNKLAIKKILARARQLVD-SKKEDGFTALHLAAL 641

Query:   218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
             N+H E+ E+L+++ + ++N  + + +TPL  A+ QG   ++  L+     ++ +D DG+ 
Sbjct:   642 NNHKEVAEILIKEGRCDVNVKNNRNQTPLHLAIIQGHVGLVQLLVSEGSDVNAEDEDGDT 701

Query:   278 LLHFLFIKKNFYKTPITR---EKSVPIYEEYLSVGGPSN-EHGILLAVFLFLVKHGAPLS 333
              +H    ++      + +   E    ++ +  + G   N E  +  A+  +L + GA ++
Sbjct:   702 AMHIALERQQLMSVLMEKREGEMGSSLFSKLQASGFLGNVELNVGTAIACYLAQEGADIN 761

Query:   334 LENNNRQKPLDLILED--TSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARR 391
               N+  + PLDLI +     ++ +  +  RE    ++++ + +  ++ ++      +   
Sbjct:   762 YANHRGKSPLDLITDGRIVQIIKDFSQKFREQ--QVSSDCSAITCSLRRVHTTPNTMTNL 819

Query:   392 S-SCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRM 450
             S S   VP EC VCSEL +  +   PC H++ CEECS RMKKCI C+  I  ++  D   
Sbjct:   820 SVSSVAVPTECLVCSELALL-IHFFPCQHSIVCEECSRRMKKCIKCQVTITKKLKRDSTE 878

Query:   451 V---PGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTL 507
             V   P  E  D+ K+  +  L+++  ++EE  TC IC++     +F CGHG+C  C+  L
Sbjct:   879 VECSPSSESTDQRKL--MEELQNRYRQMEERITCPICIDDQIKLVFQCGHGSCPDCSTAL 936

Query:   508 KFCHMCRKLIEQRINI 523
               C +CR+ I +RI I
Sbjct:   937 TVCPICRQAIRERIQI 952

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BU56 MIB2 "E3 ubiquitin-protein ligase MIB2" [Gallus gallus (taxid:9031)]

 Score = 578 (208.5 bits), Expect = 8.6e-66, Sum P(2) = 8.6e-66
 Identities = 130/436 (29%), Positives = 233/436 (53%)

Query:   105 DMLDTPSAECSG--ILIKQDFV-----LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL 157
             D+L+  +A+C+   + + Q F      L    C+VN+ D++ DTP+H A+   ++ I  +
Sbjct:   527 DLLN--NAKCTALYVAVSQGFTEVVQALCELNCDVNLPDSHGDTPLHYAITADYKVIIEI 584

Query:   158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACF 217
             L   P ++  ++N +GFN+L+Y+ L+GN    +KILA  R L    K  DGFT LH+A  
Sbjct:   585 LTEVPNIDFTVQNCQGFNLLHYSALKGNKLAIKKILARARQLVD-SKKEDGFTALHLAAL 643

Query:   218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
             N+H E+ E+L+++ + ++N  + + +TPL  A+ QG   ++  L+     ++ +D DG+ 
Sbjct:   644 NNHKEVAEILIKEGRCDVNVKNNRNQTPLHLAIIQGHVGLVQLLVSEGSDVNAEDEDGDT 703

Query:   278 LLHFLFIKKNFYKTPITR---EKSVPIYEEYLSVGGPSN-EHGILLAVFLFLVKHGAPLS 333
              +H    ++      + +   E    ++ +  + G   N E  +  A+  +L + GA ++
Sbjct:   704 AMHIALERQQLMSVLMEKREGEMGSSLFSKLQASGFLGNVELNVGTAIACYLAQEGADIN 763

Query:   334 LENNNRQKPLDLILED--TSLLNEIMEHAREYVTDLTNENNKVVTAISQLALDEKLLARR 391
               N+  + PLDLI +     ++ +  +  RE    ++++ + +  ++ ++      +   
Sbjct:   764 YANHRGKSPLDLITDGRIVQIIKDFSQKFREQ--QVSSDCSAITCSLRRVHTTPNTMTNL 821

Query:   392 S-SCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRM 450
             S S   VP EC VCSEL +  +   PC H++ CEECS RMKKCI C+  I  ++  D   
Sbjct:   822 SVSSVAVPTECLVCSELALL-IHFFPCQHSIVCEECSRRMKKCIKCQVTITKKLKQDSTE 880

Query:   451 V---PGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTL 507
             V   P  E  D+ K+  +  L+++  ++EE  TC IC++     +F CGHG+C  C+  L
Sbjct:   881 VECSPSSESTDQRKL--MEELQNRYRQMEERITCPICIDDQIKLVFQCGHGSCPDCSTAL 938

Query:   508 KFCHMCRKLIEQRINI 523
               C +CR+ I +RI I
Sbjct:   939 TVCPICRQAIRERIQI 954

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

ZFIN|ZDB-GENE-050628-1 mib2 "mind bomb 2" [Danio rerio (taxid:7955)]

 Score = 603 (217.3 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 132/408 (32%), Positives = 222/408 (54%)

Query:   124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
             VL  +  +VN+QD+  DTP+HDA+AK F  I  +L   P ++   +N++GFN+L++A L+
Sbjct:   594 VLTEHSADVNLQDSYGDTPLHDAIAKDFRSIIEILTVVPNIDFTQQNNRGFNLLHHAALK 653

Query:   184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
             GN   TE IL+  R LA V K  DGF+ LH+A  N+H ++ E+L+++ + +IN  + + +
Sbjct:   654 GNKLATEMILSRARQLADVKK-EDGFSALHLAALNNHRDVAEILLKEGRCDINIRNNRNQ 712

Query:   244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE-KSVPIY 302
             TPL  AV QG  +++  L++    ++ +D DG+  +H    ++       + E     +Y
Sbjct:   713 TPLQLAVTQGHMALVALLVMEGADVNAEDEDGDTAMHTSLSRQQLTTVISSAEGDGAVLY 772

Query:   303 EEYLSVGGPSN-EHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDT--SLLNEIMEH 359
                 S G   N E  +  A+  FL + GA +S  N+  + PLDL+ + +  +L+    E 
Sbjct:   773 GRLCSSGLMGNTELNVGAAIACFLAQEGADISYANHKGKSPLDLVTDSSVQTLIRSFAEK 832

Query:   360 AREYVTDLTNENNKVVTAISQLALDEKLLARRS-SCQNVPVECAVCSELGVANVLLKPCN 418
              R +       ++   +++ ++      +   +      P EC +CSEL +  VL  PC 
Sbjct:   833 HRLHAVSCGTGSSSSSSSLRRVHTTPNTMTNLAVPSVTGPSECLICSELALL-VLFSPCQ 891

Query:   419 HAVACEECSSRMKKCIMCKTFIEMRVTTDGRMV---PGIERCDKSKIERVNYLESKISEI 475
             H+VACEEC+ RMKKCI C+  I  ++  D   V   P  E  ++  +  +  L+S+  ++
Sbjct:   892 HSVACEECAHRMKKCIRCQVTITKKIRQDQTEVECSPSSENSEQHHL--LEQLQSRYRQM 949

Query:   476 EEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
             EE  TC IC++     +F CGH +C  C+  LK C +CR+ I +RI +
Sbjct:   950 EERITCPICIDNHIRLVFQCGHASCIDCSSALKTCPICRQTIRERIQL 997

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0002090 "regulation of receptor internalization" evidence=IDA

GO:0030318 "melanocyte differentiation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

FB|FBgn0086442 mib2 "mind bomb 2" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
 Identities = 75/218 (34%), Positives = 126/218 (57%)

Query:   125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
             LL++  NVNIQD+  DT +HDA+ K   E+  LL + P ++  ++N++GFN+L++A L+G
Sbjct:   549 LLQHNANVNIQDSYGDTALHDAIGKENTEVVELLCNAPNLDFTVKNNRGFNVLHHAALKG 608

Query:   185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
             N+    +IL L+R L  V K  DGF  LH+A  N H ++VE LV + +  ++  + +++T
Sbjct:   609 NVVAARRILLLSRQLVNVRK-DDGFAALHLAALNGHAQVVETLVTEGQAELDIRNNRQQT 667

Query:   245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKK-NFYKTPITREKSVP-IY 302
             P + AV QG   VI  L+     ++ +D DG+  +H   IKK N       + +  P I+
Sbjct:   668 PFLLAVSQGHAGVIERLVRLSCDVNAKDEDGDNAMHLCVIKKSNLQSAAEPQPEEAPEIH 727

Query:   303 EEYLSVGGPS--NEHGILLAVFLFLVKHGAPLSLENNN 338
             + YLS+   S   E  ++ ++ ++L + G  + L N N
Sbjct:   728 KFYLSLVHSSIRPEDRLMYSILIYLSRAGCRVELNNAN 765

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007520 "myoblast fusion" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IMP

GO:0031430 "M band" evidence=IDA

GO:0032033 "myosin II light chain binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0032038 "myosin II heavy chain binding" evidence=IPI

UNIPROTKB|D4A3U6 LOC474147 "Protein LOC474147" [Rattus norvegicus (taxid:10116)]

 Score = 512 (185.3 bits), Expect = 3.1e-48, P = 3.1e-48
 Identities = 131/410 (31%), Positives = 199/410 (48%)

Query:   124 VLLRNGCNVNIQDNNQDTPMHDAVAKGF--EEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
             +L  +GC+VN+ D + DTP+H A++ G     I  +L   P +++   NS+GF +L++A 
Sbjct:   540 ILCEHGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTATNSQGFTLLHHAS 599

Query:   182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
             L+G++    KILA  R L    K  DGFT LH+A  N+H E+ ++L+ + + ++N  + K
Sbjct:   600 LKGHVLAVRKILARARQLVDAKK-EDGFTALHLAALNNHREVAQVLIREGRCDVNVRNRK 658

Query:   242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPI 301
              ++PL  AV Q    ++  L+     ++ +D +G+  LH    +         R    P 
Sbjct:   659 LQSPLHLAVQQAHLGLVPLLVDAGCNVNTEDEEGDTALHVALQRHQLLPLVADRAGGDPG 718

Query:   302 YEEYLS----VGGP-SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEI 356
               + LS     G P S E  +  AV  FL   GA +S  N+  + PLDL  E   +L  +
Sbjct:   719 PLQLLSRLQASGLPGSTELTVGAAVACFLALEGADVSYANHRGRSPLDLATEGR-VLKAL 777

Query:   357 MEHAREYVTDLTNENNKVVTAISQ-LALDEKLLARRSSCQNVP--VECAVCSELGVANVL 413
                A+ +          V       L+    +     S    P   EC VCSEL +  VL
Sbjct:   778 QGCAQRFRERQAGGGGGVPPGPRHVLSTPNTVTNLHVSGTAGPEAAECLVCSELALL-VL 836

Query:   414 LKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKIS 473
               PC H   CEEC+ RMKKCI C+  I  ++  DG  V    +      + V  L+S+  
Sbjct:   837 FSPCQHRTVCEECARRMKKCIRCQVIISKKLRPDGSEVVNAIQVPGPPRQLVEELQSRYR 896

Query:   474 EIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
             ++EE  TC IC++     +F CGHG C  C   L  C +CR+ I  RI I
Sbjct:   897 QMEERITCPICIDSHIRLVFQCGHGACAPCGAALNACPICRQPIRDRIQI 946

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1359469 Mib2 "mindbomb E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)]

 Score = 512 (185.3 bits), Expect = 3.4e-48, P = 3.4e-48
 Identities = 131/410 (31%), Positives = 199/410 (48%)

Query:   124 VLLRNGCNVNIQDNNQDTPMHDAVAKGF--EEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
             +L  +GC+VN+ D + DTP+H A++ G     I  +L   P +++   NS+GF +L++A 
Sbjct:   563 ILCEHGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTATNSQGFTLLHHAS 622

Query:   182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
             L+G++    KILA  R L    K  DGFT LH+A  N+H E+ ++L+ + + ++N  + K
Sbjct:   623 LKGHVLAVRKILARARQLVDAKK-EDGFTALHLAALNNHREVAQVLIREGRCDVNVRNRK 681

Query:   242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPI 301
              ++PL  AV Q    ++  L+     ++ +D +G+  LH    +         R    P 
Sbjct:   682 LQSPLHLAVQQAHLGLVPLLVDAGCNVNTEDEEGDTALHVALQRHQLLPLVADRAGGDPG 741

Query:   302 YEEYLS----VGGP-SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEI 356
               + LS     G P S E  +  AV  FL   GA +S  N+  + PLDL  E   +L  +
Sbjct:   742 PLQLLSRLQASGLPGSTELTVGAAVACFLALEGADVSYANHRGRSPLDLATEGR-VLKAL 800

Query:   357 MEHAREYVTDLTNENNKVVTAISQ-LALDEKLLARRSSCQNVP--VECAVCSELGVANVL 413
                A+ +          V       L+    +     S    P   EC VCSEL +  VL
Sbjct:   801 QGCAQRFRERQAGGGGGVPPGPRHVLSTPNTVTNLHVSGTAGPEAAECLVCSELALL-VL 859

Query:   414 LKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKIS 473
               PC H   CEEC+ RMKKCI C+  I  ++  DG  V    +      + V  L+S+  
Sbjct:   860 FSPCQHRTVCEECARRMKKCIRCQVIISKKLRPDGSEVVNAIQVPGPPRQLVEELQSRYR 919

Query:   474 EIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
             ++EE  TC IC++     +F CGHG C  C   L  C +CR+ I  RI I
Sbjct:   920 QMEERITCPICIDSHIRLVFQCGHGACAPCGAALNACPICRQPIRDRIQI 969

GO:0000151 "ubiquitin ligase complex" evidence=IEA;ISO

GO:0003779 "actin binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0004871 "signal transducer activity" evidence=IEA;ISO

GO:0005769 "early endosome" evidence=IEA;ISO

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA;ISO

UNIPROTKB|Q68LP1 Mib2 "E3 ubiquitin-protein ligase MIB2" [Rattus norvegicus (taxid:10116)]

 Score = 512 (185.3 bits), Expect = 3.4e-48, P = 3.4e-48
 Identities = 131/410 (31%), Positives = 199/410 (48%)

Query:   124 VLLRNGCNVNIQDNNQDTPMHDAVAKGF--EEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
             +L  +GC+VN+ D + DTP+H A++ G     I  +L   P +++   NS+GF +L++A 
Sbjct:   563 ILCEHGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTATNSQGFTLLHHAS 622

Query:   182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
             L+G++    KILA  R L    K  DGFT LH+A  N+H E+ ++L+ + + ++N  + K
Sbjct:   623 LKGHVLAVRKILARARQLVDAKK-EDGFTALHLAALNNHREVAQVLIREGRCDVNVRNRK 681

Query:   242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPI 301
              ++PL  AV Q    ++  L+     ++ +D +G+  LH    +         R    P 
Sbjct:   682 LQSPLHLAVQQAHLGLVPLLVDAGCNVNTEDEEGDTALHVALQRHQLLPLVADRAGGDPG 741

Query:   302 YEEYLS----VGGP-SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEI 356
               + LS     G P S E  +  AV  FL   GA +S  N+  + PLDL  E   +L  +
Sbjct:   742 PLQLLSRLQASGLPGSTELTVGAAVACFLALEGADVSYANHRGRSPLDLATEGR-VLKAL 800

Query:   357 MEHAREYVTDLTNENNKVVTAISQ-LALDEKLLARRSSCQNVP--VECAVCSELGVANVL 413
                A+ +          V       L+    +     S    P   EC VCSEL +  VL
Sbjct:   801 QGCAQRFRERQAGGGGGVPPGPRHVLSTPNTVTNLHVSGTAGPEAAECLVCSELALL-VL 859

Query:   414 LKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKIS 473
               PC H   CEEC+ RMKKCI C+  I  ++  DG  V    +      + V  L+S+  
Sbjct:   860 FSPCQHRTVCEECARRMKKCIRCQVIISKKLRPDGSEVVNAIQVPGPPRQLVEELQSRYR 919

Query:   474 EIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
             ++EE  TC IC++     +F CGHG C  C   L  C +CR+ I  RI I
Sbjct:   920 QMEERITCPICIDSHIRLVFQCGHGACAPCGAALNACPICRQPIRDRIQI 969

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

MGI|MGI:2679684 Mib2 "mindbomb homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 508 (183.9 bits), Expect = 9.3e-48, P = 9.3e-48
 Identities = 129/410 (31%), Positives = 198/410 (48%)

Query:   124 VLLRNGCNVNIQDNNQDTPMHDAVAKGF--EEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
             +L   GC+VN+ D + DTP+H A++ G     I  +L   P +++   NS+GF +L++A 
Sbjct:   565 ILCERGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTATNSQGFTLLHHAS 624

Query:   182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
             L+G++    KILA  R L    K  DGFT LH+A  N+H E+ ++L+ + + ++N  + K
Sbjct:   625 LKGHVLAVRKILARARQLVDAKK-EDGFTALHLAALNNHREVAQVLIREGRCDVNVRNRK 683

Query:   242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPI 301
              ++PL  AV Q    ++  L+    +++ +D +G+  LH    +         R    P 
Sbjct:   684 LQSPLHLAVQQAHLGLVPLLVDAGCSVNTEDEEGDTALHVALQRHQLLPLVADRAGGDPG 743

Query:   302 YEEYLS----VGGPS-NEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEI 356
               + LS     G P   E  +  AV  FL   GA +S  N+  + PLDL  E   +L  +
Sbjct:   744 PLQLLSRLQASGLPGCTELTVGAAVACFLALEGADVSYANHRGRSPLDLATEGR-VLKAL 802

Query:   357 MEHAREYVTDLTNENNKVVTAISQ-LALDEKLLARRSSCQNVP--VECAVCSELGVANVL 413
                A+ +          V       L+    +     S    P   EC VCSEL +  +L
Sbjct:   803 QGCAQRFRERQAGGGGGVPPGPRHVLSTPNTVTNLHVSGTAGPEAAECLVCSELALL-IL 861

Query:   414 LKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKIS 473
               PC H   CEEC+ RMKKCI C+  I  ++  DG  V    +      + V  L+S+  
Sbjct:   862 FSPCQHRTVCEECARRMKKCIRCQVVISKKLRPDGSEVVNAIQVPGPPRQLVEELQSRYR 921

Query:   474 EIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
             ++EE  TC IC++     +F CGHG C  C   L  C +CR+ I  RI I
Sbjct:   922 QMEERITCPICIDSHIRLVFQCGHGACAPCGAALNACPICRQPIRDRIQI 971

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0003779 "actin binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IDA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H0YAM8 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 501 (181.4 bits), Expect = 2.7e-47, P = 2.7e-47
 Identities = 124/410 (30%), Positives = 195/410 (47%)

Query:   125 LLRNGCNVNIQDNNQDTPMHDAVAKGF--EEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
             L   GC+VN+ D + DTP+H A++ G     I  +L   P +++   NS+GF +L++A L
Sbjct:   424 LCERGCDVNLPDAHSDTPLHSAISAGTGASGIVEVLTEVPNIDVTATNSQGFTLLHHASL 483

Query:   183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
             +G+     KILA  R L    K  DGFT LH+A  N+H E+ ++L+ + + ++N  + K 
Sbjct:   484 KGHALAVRKILARARQLVDAKK-EDGFTALHLAALNNHREVAQILIREGRCDVNVRNRKL 542

Query:   243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKS---- 298
             ++PL  AV Q    ++  L+    +++ +D +G+  LH    +      P+  + +    
Sbjct:   543 QSPLHLAVQQAHVGLVPLLVDAGCSVNAEDEEGDTALHVALQRHQLL--PLVADGAGGDP 600

Query:   299 --VPIYEEYLSVGGP-SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNE 355
               + +     + G P S E  +  AV  FL   GA +S  N+  + PLDL  E   L  +
Sbjct:   601 GPLQLLSRLQASGLPGSAELTVGAAVACFLALEGADVSYTNHRGRSPLDLAAEGRVL--K 658

Query:   356 IMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVP--VECAVCSELGVANVL 413
              ++   +   +              L     +          P   EC VCSEL +  VL
Sbjct:   659 ALQGCAQRFRERQAGGGAAPGPRQTLGTPNTVTNLHVGAAPGPEAAECLVCSELALL-VL 717

Query:   414 LKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKIS 473
               PC H   CEEC+ RMKKCI C+  +  ++  DG  V           + V  L+S+  
Sbjct:   718 FSPCQHRTVCEECARRMKKCIRCQVVVSKKLRPDGSEVASAAPAPGPPRQLVEELQSRYR 777

Query:   474 EIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINI 523
             ++EE  TC IC++     +F CGHG C  C   L  C +CR+ I  RI I
Sbjct:   778 QMEERITCPICIDSHIRLVFQCGHGACAPCGSALSACPICRQPIRDRIQI 827

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	644
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-08
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-07
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	1e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
smart00248	30	smart00248, ANK, ankyrin repeats	8e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-04
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	0.002
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 88.6 bits (220), Expect = 6e-21
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
           +  G   L+ A   G+++V + +L    ++    K +DG TPLH+A  N H+EIV+LL+E
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
           K   ++NA D    TPL  A   G   V+  L+     ++ +D DG   LH
Sbjct: 62  K-GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLH 111

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.7 bits (215), Expect = 3e-20
 Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 4/130 (3%)

Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKI 192
           N +D +  TP+H A + G  E+  LLL +   ++  +++ G   L+ A   G++++ + +
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQ 252
           L    ++    +  DG TPLH+A  N ++++V+LL+ K+  ++NA D   RTPL  A   
Sbjct: 60  LEKGADVNA--RDKDGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLAAKN 116

Query: 253 GQTSVINYLM 262
           G   V+  L+
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.0 bits (190), Expect = 7e-17
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +LL NG +VN +DN+  TP+H A   G  EI  LLL     ++   +  G   L+ A   
Sbjct: 25  LLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARN 83

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
           GN+ V + +L    ++    +  DG TPLH+A  N H+E+V+LL+
Sbjct: 84  GNLDVVKLLLKHGADVNA--RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
           +  DG TPLH+A  N H+E+V+LL+E    ++NA D   RTPL  A   G   ++  L+ 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 264 RDVALDIQDIDGNGLLH 280
           +   ++ +D DGN  LH
Sbjct: 62  KGADVNARDKDGNTPLH 78

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           L+ A   GN+++ + +L    +        D  T LH+A  N ++EIV+LL+E +  ++N
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD----VNLGDTDTALHLAARNGNLEIVKLLLE-HGADVN 55

Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQD 272
           A D    T L  A   G   ++  L+     ++++D
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 144 HDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV 202
           H A   G  E+ +LLL    +VNL          L+ A   GN+++ + +L    ++   
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVNA- 56

Query: 203 PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
            K  DG T LH+A  N ++EIV+LL+E    +IN  D
Sbjct: 57  -KDKDGNTALHLAARNGNLEIVKLLLEHG-ADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 24/175 (13%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL-LLSHPEVNLYLENSKGFNILNYAVL 182
           +LL  G NVN  DNN  TP+  A++K      ++  L     N+ ++NS G N+L+   L
Sbjct: 91  LLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL-YL 149

Query: 183 RGNMKVTEKILAL------NRNLAT---------VP---KTSDGFTPLHVACFNDHIEIV 224
             N K+  KIL L      + N            VP   K   GFTPLH A +N++ E V
Sbjct: 150 ESN-KIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208

Query: 225 ELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
           + L++    N N ++    TPL  A+      +   L+       I+ I    L 
Sbjct: 209 KYLLDL-GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN--GPSIKTIIETLLY 260

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 44/161 (27%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
           +T LH+ A  G +E + +LL  GA V   D+ G T LH AA     + ++  +     GA
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE---KGA 64

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
           +                       N    +  TP+         N D++         +L
Sbjct: 65  D----------------------VNARDKDGNTPL--HLAARNGNLDVVK--------LL 92

Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL 159
           +K       +G +VN +D +  TP+H A   G  E+  LLL
Sbjct: 93  LK-------HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
           LH+A  N ++E+V+LL+EK   ++N  D    T L  A   G   ++  L+     ++ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKG-ADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 272 DIDGNGLLHF 281
           D DGN  LH 
Sbjct: 58  DKDGNTALHL 67

Length = 91

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 59.5 bits (144), Expect = 4e-09
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 15/110 (13%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL-----LSHPEVNLYLENSKGFNILN 178
           VLL++ CNV+I+D N +T + +A++    +I  +L     +S P            ++L 
Sbjct: 576 VLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHA--------AGDLLC 627

Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
            A  R ++   +++L    N+ +  +   G T L VA   DH+++V LL+
Sbjct: 628 TAAKRNDLTAMKELLKQGLNVDS--EDHQGATALQVAMAEDHVDMVRLLI 675

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 31/189 (16%)

Query: 125 LLRNGCNVNIQDNNQDTPMH-----DAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
           LL NG ++N    N  TP+H            +EI  LLL +   N+   ++ G   L Y
Sbjct: 54  LLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAPDNNGITPLLY 112

Query: 180 AVLR--GNMKVTEKILALNRNLATVPKTSDGFTPLHVA--CFNDHIEIVELLVEK----- 230
           A+ +   +  + E +L    N     K SDG   LH+        ++I++LL++K     
Sbjct: 113 AISKKSNSYSIVEYLLDNGAN--VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN 170

Query: 231 ----------YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL-- 278
                     Y V IN  D+   TPL  AV       + YL+  D+  +   ++  G   
Sbjct: 171 AKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL--DLGANPNLVNKYGDTP 228

Query: 279 LHFLFIKKN 287
           LH   +  N
Sbjct: 229 LHIAILNNN 237

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 8/178 (4%)

Query: 103 NEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP 162
            +  L    A      + +  + L    ++  +D +   P+H A +KG ++I  LLL+  
Sbjct: 37  KKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASG 96

Query: 163 EVNLYLENSKGFNILNYAVLRGNMK-----VTEKILALNRNLA-TVPKTSDGFTPLHVAC 216
             ++  +++ G   L+ A L GN       V + +L    +L     +  DG TPLH A 
Sbjct: 97  -ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
            N   +IVELL+E    + N+ +    T L  A   G+  ++  L+ + + L +   +
Sbjct: 156 LNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI---LNYA 180
           +L   G +VNI+D+N   P+H A+   F +I  LLL   E   Y  N K  N    L+ A
Sbjct: 142 MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL---EKGAYA-NVKDNNGESPLHNA 197

Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
              G+    + ++    ++    K  +GFTPLH A  ++    +ELL+     +IN  D+
Sbjct: 198 AEYGDYACIKLLIDHGNHIMN--KCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDI 252

Query: 241 KKRTPLMAAVGQG-QTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE 296
              TPL  A+       +I+ L+     + I+D  G   +   F  K   K P+ ++
Sbjct: 253 DGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAF--KYINKDPVIKD 307

Length = 434

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 5/49 (10%)

Query: 477 EMNTCTICMERCRNTIFL-CGH-GTCDVCAKTL---KFCHMCRKLIEQR 520
           E + C IC+ER RN +FL CGH   C+ CAK L   K C +CR+ IE  
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49

Length = 49

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ 50
          T LH  A  G +E +  LL +G  +   D+ G+TALH AA     + ++
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
           G T LH A  +  +E+V+ L+EK  V+IN  D    T L  A   G   V+  L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.2 bits (108), Expect = 8e-07
 Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
           DG TPLH+A  N H+E+V+LL+E    ++NA D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE-AGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRM---KKCIMCKTFIE 441
            C +C E    NV+  PC H   CEEC+ R+   KKC +C+  IE
Sbjct: 4   LCVICLE-RPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIE 47

Length = 49

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 9/166 (5%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH---PEVNLYLENSKGFNILNYAV 181
           LL  G N N +  +  +P+  A+     E   LL+ H   P+V      S+    L+ AV
Sbjct: 21  LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE----LHDAV 76

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
             G++K  E++L L +    V    DG TPLH+A     ++I++LL+     + +  +  
Sbjct: 77  EEGDVKAVEELLDLGKFADDV-FYKDGMTPLHLATILKKLDIMKLLI-ARGADPDIPNTD 134

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN 287
           K +PL  AV  G    I  L+     LDI+D  G   L     K +
Sbjct: 135 KFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 16/166 (9%)

Query: 125 LLRNGCNVNIQDNNQDTP----MHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYA 180
           LL  G +VN +     TP    +H +  K  + ++LLL +  +VN       GF  L+  
Sbjct: 33  LLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP--ERCGFTPLHLY 90

Query: 181 VLRGNMKVTEKILA-LNRNLATVPKTSD-GFTPLHVAC--FNDHIEIVELLVEKYKVNIN 236
           +       T  ++  L +  A V      G TPLHV    FN + +++ LL+ K   ++N
Sbjct: 91  LYNAT---TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK-GADVN 146

Query: 237 ALDLKKRTPLMAAVGQGQTSV--INYLMLRDVALDIQDIDGNGLLH 280
           ALDL   TPL   +     +V  +  L+     +   D     LLH
Sbjct: 147 ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL  G NVNI D   ++P+H AV    + I  +LL +   +    +  G   L+ +V  G
Sbjct: 187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN-GASTDARDKCGNTPLHISV--G 243

Query: 185 NMKVTEKILALNRNLATVPKTSD--GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
             K  + +  L  +   V   S   G T LH +      E    L+ +Y  +IN+L+  K
Sbjct: 244 YCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI---KSERKLKLLLEYGADINSLNSYK 300

Query: 243 RTPLMAAVGQ 252
            TPL +AV Q
Sbjct: 301 LTPLSSAVKQ 310

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
          T LH+ A  G +E + +LL  GA V   D  G+TALH AA     + +++
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKL 79

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 34/142 (23%), Positives = 73/142 (51%), Gaps = 9/142 (6%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVN--LYLENSKGFNILNYA 180
           +L+++G   +++  + ++ +HDAV +G  + ++ LL      +   Y     G   L+ A
Sbjct: 53  LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFY---KDGMTPLHLA 109

Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
            +   + + + ++A   +   +P T D F+PLH+A     I+ +ELL+  +K  ++  D 
Sbjct: 110 TILKKLDIMKLLIARGAD-PDIPNT-DKFSPLHLAVMMGDIKGIELLI-DHKACLDIEDC 166

Query: 241 KKRTPLMAAVGQGQTSVINYLM 262
              TPL+ A+ +G  ++   L+
Sbjct: 167 CGCTPLIIAMAKGDIAICKMLL 188

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 15/253 (5%)

Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
           ++   +L   G +VN  D+ ++TP+H A         +  L     ++  +N KG   L 
Sbjct: 253 LETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL- 311

Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGF-TPLHVACFNDHIEIVELLVEKYKVNINA 237
             ++  N   TE I  L    A V      + TPLH A   D  + + + + +   N+NA
Sbjct: 312 -YLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA 370

Query: 238 LDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN--GLLHFLFIKKNFY---KTP 292
            D   +TP+  A  +    +IN L+  D   DI+ +       LHF     N Y   KT 
Sbjct: 371 RDYCDKTPIHYAAVRNNVVIINTLL--DYGADIEALSQKIGTALHFALCGTNPYMSVKTL 428

Query: 293 ITREKSVPIYEEYLSVGGP---SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED 349
           I R  +V    + LS   P   + +    L V   L+ +GA ++  N   Q PL + LE 
Sbjct: 429 IDRGANVNSKNKDLST--PLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY 486

Query: 350 TSLLNEIMEHARE 362
             ++N ++ +  E
Sbjct: 487 HGIVNILLHYGAE 499

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 63/300 (21%), Positives = 110/300 (36%), Gaps = 43/300 (14%)

Query: 12  CVEELNILLARGACVYYPDDAGDTALH-YAAFGNKPDAIQINSHV-SGANRSRKHIYKER 69
            VEE+  LLA GA V +  + G T LH Y  + ++     +   + +GA+ +        
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 70  --H---RTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDML------DTP-SAECSGI 117
             H      TT  V                 +K + +   D+        TP     SG 
Sbjct: 86  PLHLYLYNATTLDV-----------------IKLLIKAGADVNAKDKVGRTPLHVYLSGF 128

Query: 118 LIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL-LLSHPEVNLYLENSKGF 174
            I    +  LLR G +VN  D    TP+   +      ++LL LL     ++Y  + +  
Sbjct: 129 NINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFR 188

Query: 175 NILNY--AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVA---CFNDHIEIVELLVE 229
           ++L++     +   ++  +++    + A       G TPLH            ++ LL+ 
Sbjct: 189 SLLHHHLQSFKPRARIVRELIRAGCDPAAT--DMLGNTPLHSMATGSSCKRSLVLPLLIA 246

Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFY 289
              ++INA +   +TPL  A           L+     ++    DGN  L  +    N  
Sbjct: 247 G--ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGR 304

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 227 LVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           L+E   +++NA D    TPL  A   G   ++ +L+   V L+++D DG   L  
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 14/140 (10%)

Query: 117 ILIKQDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
           I IK +F     +LL  G   N++DNN ++P+H+A   G      LL+ H   ++  +  
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMNKCK 221

Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTS-DGFTPLHVAC-FNDHIEIVELLVE 229
            GF  L+ A++  N    E ++    N A++     DG TPLH A      I+I+++L+ 
Sbjct: 222 NGFTPLHNAIIH-NRSAIELLI----NNASINDQDIDGSTPLHHAINPPCDIDIIDILL- 275

Query: 230 KYKVNINALDLKKRTPLMAA 249
            +K +I+  D K   P+  A
Sbjct: 276 YHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
           G   L+ A + G +++ + +L    ++       DG T LH+A  N ++E+++LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTD--EDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
           DG TPLH+A  N ++E+V+LL+     +INA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLL-DKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNL 166
           LL +G +VN +D + +T +H A   G  EI +LLL    ++NL
Sbjct: 47  LLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +LL  G +VN +D    TP+H A  +G  ++  LLLS+  +VN+   +    ++L  AV 
Sbjct: 163 MLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD--DLSVLECAV- 219

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
             + K  + I A+  N + + K       L  A  N+ +E   LL+     ++N++D  K
Sbjct: 220 --DSKNIDTIKAIIDNRSNINKND---LSLLKAIRNEDLE-TSLLLYDAGFSVNSIDDCK 273

Query: 243 RTPLMAAVGQGQTS-VINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITR 295
            TPL  A      S ++  L+ R   ++ ++I G   L+ +   KN Y T   R
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLM--AKNGYDTENIR 325

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
           DG TPLH+AC N H+++V +L+E +  +   LD   +TPL  A   G   V+  L 
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 480 TCTICMERCRNTIFL--CGHGTCDVCAKTL----KFCHMCRK 515
            C IC++  R+ + L  CGH  C  C          C +CR 
Sbjct: 4   ECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYA 40
          T LH+ A  G +E +  LL  G  +   D  G TAL  A
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVA 215
           LL H  ++L   +  G   L+ A   G +++ + +L    +L    + SDG T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL--RDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAA 249
           L  +  +       +G TPLH+A     +E+V+ L+ K  V++N  D    T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 1/31 (3%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
           DG TPLH+A  N ++E+V+LL+E +  +INA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLE-HGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 20/121 (16%)

Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH-----------FLFI 284
           NA D   RTPL  A   G   V+  L+     ++ +D DG   LH            L +
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 285 KKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLD 344
           +K        ++ + P++      G         L V   L+KHGA ++  + + + PL 
Sbjct: 61  EKGADVNARDKDGNTPLH-LAARNG--------NLDVVKLLLKHGADVNARDKDGRTPLH 111

Query: 345 L 345
           L
Sbjct: 112 L 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 7/45 (15%)

Query: 480 TCTICMERCRNTIFL--CGHGTCDVCAKTL-----KFCHMCRKLI 517
            C IC+E  R  + L  CGH  C  C           C +CR  I
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 20/134 (14%)

Query: 194 ALNRNLATVPKTSD---GFTPLHVACFNDHIEIVELLVEKYKVNINAL----DLKK---- 242
           +    LA    TS+   G T LH+A    + EIV+LL+E+   ++ A        K    
Sbjct: 111 SGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGV 169

Query: 243 ------RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE 296
                  +PL AA   G  S++  L      +   D  GN LLH L ++  F       E
Sbjct: 170 DSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEF--KAEYEE 227

Query: 297 KSVPIYEEYLSVGG 310
            S  +Y   LS+  
Sbjct: 228 LSCQMYNFALSLLD 241

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	644
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG4177|consensus	1143		100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177|consensus	1143		100.0
PHA02875	413	ankyrin repeat protein; Provisional	99.98
KOG0508|consensus	615		99.98
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
KOG0509|consensus	600		99.97
KOG0509|consensus	600		99.96
KOG0508|consensus	615		99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG4369|consensus	2131		99.93
KOG0502|consensus	296		99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0507|consensus	854		99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0502|consensus	296		99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0507|consensus	854		99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0505|consensus	527		99.88
KOG0514|consensus	452		99.86
KOG0514|consensus	452		99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.83
KOG4369|consensus	2131		99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.8
KOG0505|consensus	527		99.79
PHA02741	169	hypothetical protein; Provisional	99.79
KOG0512|consensus	228		99.79
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.76
KOG0512|consensus	228		99.75
KOG0195|consensus	448		99.69
KOG0195|consensus	448		99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
KOG3676|consensus	782		99.65
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
KOG3676|consensus	782		99.59
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.58
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.57
KOG4214|consensus	117		99.44
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
KOG4214|consensus	117		99.41
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.4
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.34
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.3
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
KOG1710|consensus	396		99.26
KOG1710|consensus	396		99.23
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.21
KOG4172|consensus	62		99.11
KOG0515|consensus	752		99.11
KOG0515|consensus	752		99.11
KOG4275|consensus	350		98.96
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.85
KOG0783|consensus	1267		98.68
KOG0783|consensus	1267		98.61
PF13606	30	Ank_3: Ankyrin repeat	98.51
PF13606	30	Ank_3: Ankyrin repeat	98.51
KOG0818|consensus	669		98.49
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.49
KOG4265|consensus	349		98.48
KOG0506|consensus	622		98.45
KOG0818|consensus	669		98.45
KOG0320|consensus	187		98.42
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.4
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.34
KOG1571|consensus	355		98.31
KOG0506|consensus	622		98.31
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.24
KOG0782|consensus	1004		98.21
KOG0522|consensus	560		98.2
KOG0782|consensus	1004		98.18
KOG0705|consensus	749		98.18
KOG4172|consensus	62		98.16
KOG0705|consensus	749		98.15
KOG0522|consensus	560		98.13
KOG4265|consensus	349		98.08
KOG3609|consensus	822		98.0
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.99
KOG0978|consensus	698		97.96
KOG2164|consensus	513		97.95
KOG1100|consensus	207		97.95
PF14634	44	zf-RING_5: zinc-RING finger domain	97.95
KOG0521|consensus	785		97.95
PHA02929	238	N1R/p28-like protein; Provisional	97.93
KOG3609|consensus	822		97.93
PHA02926	242	zinc finger-like protein; Provisional	97.85
KOG0521|consensus	785		97.84
KOG4275|consensus	350		97.82
KOG2384|consensus	223		97.77
KOG0823|consensus	230		97.76
KOG2384|consensus	223		97.74
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.72
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	97.71
KOG0511|consensus	516		97.71
KOG1571|consensus	355		97.63
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.6
KOG0317|consensus	293		97.55
KOG0520|consensus	975		97.54
KOG0511|consensus	516		97.51
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	97.49
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.41
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.39
KOG0824|consensus	324		97.37
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.31
KOG0520|consensus	975		97.31
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	97.19
KOG1100|consensus	207		97.17
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.15
KOG4692|consensus	489		97.12
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.01
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	96.95
KOG0287|consensus	442		96.93
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	96.72
KOG1785|consensus	563		96.47
KOG2505|consensus	591		96.28
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.25
KOG2177|consensus	386		96.18
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.17
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.17
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.08
KOG2505|consensus	591		95.99
KOG3002|consensus	299		95.95
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	95.89
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	95.85
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	95.41
PF14634	44	zf-RING_5: zinc-RING finger domain	95.32
KOG0824|consensus	324		95.25
KOG0311|consensus	381		95.0
KOG4159|consensus	398		94.9
KOG1785|consensus	563		94.76
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.71
KOG2879|consensus	298		94.68
KOG1039|consensus	344		94.68
KOG0320|consensus	187		94.49
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	94.48
KOG1813|consensus	313		94.41
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	94.19
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	94.17
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	94.01
KOG4692|consensus	489		93.99
PHA02929	238	N1R/p28-like protein; Provisional	93.98
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	93.96
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	93.9
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.9
KOG4739|consensus	233		93.86
COG5152	259	Uncharacterized conserved protein, contains RING a	93.71
KOG0802|consensus	543		93.49
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.48
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.32
PHA02926	242	zinc finger-like protein; Provisional	93.11
KOG2231|consensus	669		93.08
KOG0823|consensus	230		92.51
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	92.36
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	92.27
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	92.2
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.72
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	91.51
KOG0317|consensus	293		91.35
KOG2113|consensus	394		91.3
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	91.02
KOG0978|consensus	698		90.71
KOG1814|consensus	445		89.8
KOG4628|consensus	348		89.62
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	88.7
KOG1001|consensus	674		88.11
KOG0297|consensus	391		88.08
KOG0804|consensus	493		87.26
KOG0287|consensus	442		86.44
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.25
COG5236	493	Uncharacterized conserved protein, contains RING Z	86.0
KOG2660|consensus	331		85.93
KOG2164|consensus	513		85.42
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.31
COG5222	427	Uncharacterized conserved protein, contains RING Z	85.29
KOG2879|consensus	298		85.26
KOG0804|consensus	493		84.57
KOG3039|consensus	303		84.53
PF04641	260	Rtf2: Rtf2 RING-finger	84.27
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	84.23
KOG1002|consensus	791		83.83
KOG4367|consensus	699		83.5
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	83.45
KOG0828|consensus	636		82.46
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	81.45
KOG2932|consensus	389		80.66
PF10217	92	DUF2039: Uncharacterized conserved protein (DUF203	80.39
KOG1701|consensus	468		80.14

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.5e-40  Score=378.56  Aligned_cols=325  Identities=19%  Similarity=0.176  Sum_probs=273.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      ++|+.|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++| .+|++++.....+.++++.+........
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~i  226 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDT  226 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHH
Confidence            578889999999999999999999999999999999999999999999999 9999998887777777777665443322


Q ss_pred             CCCCCCCCC--------------CCcccccccccccccCCCCCCcccchhhHHHH--------HHHHHhCCCCCCCCCCC
Q psy2733          81 PSNLPKVEP--------------ETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ--------DFVLLRNGCNVNIQDNN  138 (644)
Q Consensus        81 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~--------v~~Ll~~gad~n~~d~~  138 (644)
                      ...+.....              ........++...+.+....+..|.||||+|+        +++|++.|++++..|.+
T Consensus       227 vk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~  306 (682)
T PHA02876        227 IKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIK  306 (682)
T ss_pred             HHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCC
Confidence            111110000              01111123445556667777888999999996        77899999999999999


Q ss_pred             CCcHHHHHHHcC-CHHHHHHHhcCCCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHhcCCccCCcCCCCCchHHHHHH
Q psy2733         139 QDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR-GNMKVTEKILALNRNLATVPKTSDGFTPLHVAC  216 (644)
Q Consensus       139 G~TpL~~A~~~g-~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~  216 (644)
                      |.||||+|+..| +.+++++|+. .|++++..+..|.||||+|+.. ++.++++.|++.++++..  .|..|+||||+|+
T Consensus       307 g~TpLh~Aa~~g~~~~~v~~Ll~-~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~--~d~~G~TpLh~Aa  383 (682)
T PHA02876        307 GETPLYLMAKNGYDTENIRTLIM-LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA--RDYCDKTPIHYAA  383 (682)
T ss_pred             CCCHHHHHHHhCCCHHHHHHHHH-cCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc--CCCCCCCHHHHHH
Confidence            999999999999 6999999999 7999999999999999999985 578899999999988766  5688999999999


Q ss_pred             hcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccc
Q psy2733         217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ-TSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITR  295 (644)
Q Consensus       217 ~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~-~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~  295 (644)
                      ..|+.+++++|++. |++++..+..|.||||+|+..++ ..++++|+++|+++|.+|..|+||||+|+..+.        
T Consensus       384 ~~~~~~iv~~Ll~~-gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~--------  454 (682)
T PHA02876        384 VRNNVVIINTLLDY-GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC--------  454 (682)
T ss_pred             HcCCHHHHHHHHHC-CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCC--------
Confidence            99999999999998 89999999999999999998766 567999999999999999999999999998763        


Q ss_pred             cCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHHHHHHHh
Q psy2733         296 EKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHA  360 (644)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~~~  360 (644)
                                            ..+++++|+++||+++.+|..|.|||++|+...++++.++...
T Consensus       455 ----------------------~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~~~v~~Ll~~~  497 (682)
T PHA02876        455 ----------------------KLDVIEMLLDNGADVNAINIQNQYPLLIALEYHGIVNILLHYG  497 (682)
T ss_pred             ----------------------cHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCHHHHHHHCC
Confidence                                  1579999999999999999999999999998788777776544

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-39  Score=352.04  Aligned_cols=263  Identities=22%  Similarity=0.251  Sum_probs=222.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      .||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++| ..|++....                  
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~------------------   97 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL------------------   97 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc------------------
Confidence            3677777777777777777777777777777777777777777777777777 665554320                  


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                    .   ........++.|++.|++++..+..|.||||+|+..|+.+++++|+
T Consensus        98 ------------------------------~---~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll  144 (434)
T PHA02874         98 ------------------------------P---IPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLF  144 (434)
T ss_pred             ------------------------------h---hccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHH
Confidence                                          0   0001123467899999999999999999999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD  239 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d  239 (644)
                      + .|++++.++..|.||||+|+..|+.+++++|++.+++...  .+..|.||||+|+..|+.+++++|++. |++++.++
T Consensus       145 ~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~--~~~~g~tpL~~A~~~g~~~iv~~Ll~~-g~~i~~~~  220 (434)
T PHA02874        145 E-YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV--KDNNGESPLHNAAEYGDYACIKLLIDH-GNHIMNKC  220 (434)
T ss_pred             h-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCcCCC
Confidence            9 7999999999999999999999999999999999987765  567899999999999999999999998 89999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHH
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILL  319 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (644)
                      ..|.||||+|+..+. +.+++|+ .|++++.+|.+|+||||+|+..+.                              ..
T Consensus       221 ~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~------------------------------~~  268 (434)
T PHA02874        221 KNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPC------------------------------DI  268 (434)
T ss_pred             CCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCC------------------------------cH
Confidence            999999999999865 5666666 699999999999999999998653                              15


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcchhhhcCC
Q psy2733         320 AVFLFLVKHGAPLSLENNNRQKPLDLILEDT  350 (644)
Q Consensus       320 ~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~  350 (644)
                      +++++|+++|++++.+|..|+|||++|++..
T Consensus       269 ~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        269 DIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence            7999999999999999999999999998655

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=347.12  Aligned_cols=291  Identities=14%  Similarity=0.149  Sum_probs=179.0

Q ss_pred             cHHHHHHH--cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccc
Q psy2733           2 TLLHILAY--QGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKV   78 (644)
Q Consensus         2 TpLh~Aa~--~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~   78 (644)
                      ++||.++.  .++.++|++|+++|+++|.+|.+|+||||+|+..|+.++|++| .+|++++..+..+.++++.+..... 
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~-  117 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD-  117 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC-
Confidence            68888764  4578999999999999999999999999999999999999999 9999999855555555554321100 


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCC-CCcccchhhHHHH------HHHHHhCCCCCCCCCCCCCcHHHHHHHcC-
Q psy2733          79 QRPSNLPKVEPETPMLNMKFIPRMNEDMLD-TPSAECSGILIKQ------DFVLLRNGCNVNIQDNNQDTPMHDAVAKG-  150 (644)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~L~~a~------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g-  150 (644)
                                  .....++++...+.+... .+..|.|||+.+.      +++|++.|++++.+|..|+||||+|+..+ 
T Consensus       118 ------------~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~  185 (446)
T PHA02946        118 ------------EVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDN  185 (446)
T ss_pred             ------------chHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcC
Confidence                        001112223333333332 3445555555332      55555555555555555555555555433 


Q ss_pred             -CHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCc-HHHHHH
Q psy2733         151 -FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG--NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH-IEIVEL  226 (644)
Q Consensus       151 -~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~-~~~v~~  226 (644)
                       +.+++++|++ .|++++.+|.+|.||||+|+..|  +.+++++|+. +++++.  .|..|.||||+|+..++ .+++++
T Consensus       186 ~~~~~v~~Ll~-~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~--~d~~G~TpLh~A~~~~~~~~~~~~  261 (446)
T PHA02946        186 PKASTISWMMK-LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNK--QNKFGDSPLTLLIKTLSPAHLINK  261 (446)
T ss_pred             CCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCC--CCCCCCCHHHHHHHhCChHHHHHH
Confidence             2455555555 45555555555555555555543  4555555553 333322  34555555555555554 345555


Q ss_pred             HHHhcCCCcc--------------------cC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHc
Q psy2733         227 LVEKYKVNIN--------------------AL-DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIK  285 (644)
Q Consensus       227 Ll~~~g~~in--------------------~~-d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~  285 (644)
                      |++. |..++                    .. +..|.||||+|+..|+.+++++|+++|+       +|.||||+|+..
T Consensus       262 Ll~~-g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~  333 (446)
T PHA02946        262 LLST-SNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLS  333 (446)
T ss_pred             HHhC-CCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHh
Confidence            5554 33211                    11 1234455555555555555555555442       345555555555


Q ss_pred             CCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcC
Q psy2733         286 KNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED  349 (644)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~  349 (644)
                      ++                               .+++++|+.+|+++|.+ .+|.|||++|++.
T Consensus       334 ~~-------------------------------~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~  365 (446)
T PHA02946        334 EY-------------------------------ETMVDYLLFNHFSVDSV-VNGHTCMSECVRL  365 (446)
T ss_pred             CH-------------------------------HHHHHHHHHCCCCCCCc-cccccHHHHHHHc
Confidence            54                               78999999999999996 5899999999943

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.2e-38  Score=347.57  Aligned_cols=271  Identities=20%  Similarity=0.245  Sum_probs=247.2

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcC---CHHHHHHH-hhccCCCccchhhhhhhhhccccccccC
Q psy2733           5 HILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGN---KPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         5 h~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g---~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      ..|+..+++++|++|++.|++++.++..|.||||+|+..+   +.+++++| ..|++++.                    
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~--------------------   78 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA--------------------   78 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCC--------------------
Confidence            4577889999999999999999999999999999999998   99999999 99999988                    


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH--------HHHHHhCCCCCCCCCCCCCcHHHHHH--HcC
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ--------DFVLLRNGCNVNIQDNNQDTPMHDAV--AKG  150 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~--------v~~Ll~~gad~n~~d~~G~TpL~~A~--~~g  150 (644)
                                                  .+..|.||||+|+        +++|+++|+++|.+|..|.||||+|+  ..+
T Consensus        79 ----------------------------~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~  130 (471)
T PHA03095         79 ----------------------------PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNI  130 (471)
T ss_pred             ----------------------------CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcC
Confidence                                        7778999999885        88999999999999999999999999  556


Q ss_pred             CHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhc--CcHHHHHH
Q psy2733         151 FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG--NMKVTEKILALNRNLATVPKTSDGFTPLHVACFN--DHIEIVEL  226 (644)
Q Consensus       151 ~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~--g~~~~v~~  226 (644)
                      +.+++++|++ .|++++..+..|.||||+|+..+  +.++++.|++.|++....  +..|+||||+|+..  ++.++++.
T Consensus       131 ~~~iv~~Ll~-~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~--d~~g~t~Lh~~~~~~~~~~~i~~~  207 (471)
T PHA03095        131 NPKVIRLLLR-KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV--DDRFRSLLHHHLQSFKPRARIVRE  207 (471)
T ss_pred             CHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHHCCCcHHHHHH
Confidence            8999999999 79999999999999999999876  689999999999988764  68999999999875  78899999


Q ss_pred             HHHhcCCCcccCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHh
Q psy2733         227 LVEKYKVNINALDLKKRTPLMAAVGQGQT--SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE  304 (644)
Q Consensus       227 Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~--~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~  304 (644)
                      |++. |++++.+|..|+||||+|+..|+.  .+++.|++.|+++|.+|..|+||||+|+..++                 
T Consensus       208 Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~-----------------  269 (471)
T PHA03095        208 LIRA-GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNN-----------------  269 (471)
T ss_pred             HHHc-CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC-----------------
Confidence            9998 899999999999999999999975  68899999999999999999999999999988                 


Q ss_pred             hhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCc--HHHHHHH
Q psy2733         305 YLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTS--LLNEIME  358 (644)
Q Consensus       305 ~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~--~~~~l~~  358 (644)
                                    .+++++|+++||+++.+|.+|+|||++|+..++  +++.++.
T Consensus       270 --------------~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        270 --------------PRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             --------------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence                          679999999999999999999999999995543  3444443

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.1e-38  Score=360.59  Aligned_cols=355  Identities=15%  Similarity=0.133  Sum_probs=216.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCcHHHHHHhcCCHH-------------------------------H
Q psy2733           1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPD-------------------------------A   48 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~-~n~~d~~G~TpLh~Aa~~g~~e-------------------------------i   48 (644)
                      +||||+|++.|+.|+|++|++.+.+ ++..|..|.||||+|+..++..                               +
T Consensus        42 ~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (682)
T PHA02876         42 FTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEAC  121 (682)
T ss_pred             chHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHH
Confidence            5899999999999999999999887 5778889999999888554421                               0


Q ss_pred             HHHH-h--hccCCCccchhh----hhhhhhccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH
Q psy2733          49 IQIN-S--HVSGANRSRKHI----YKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ  121 (644)
Q Consensus        49 v~lL-~--~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~  121 (644)
                      +..| .  .+.++.......    .+.+..+...               ......+++...+.++...+..|.||||+|+
T Consensus       122 ~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---------------~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa  186 (682)
T PHA02876        122 IHILKEAISGNDIHYDKINESIEYMKLIKERIQQ---------------DELLIAEMLLEGGADVNAKDIYCITPIHYAA  186 (682)
T ss_pred             HHHHHHHhcCCcccHHhhccchhhhHHHHHHHHC---------------CcHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence            1111 0  000000000000    0000010000               0112234445555555556666777777774


Q ss_pred             -------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH-----------------------------HhcCCCCC
Q psy2733         122 -------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL-----------------------------LLSHPEVN  165 (644)
Q Consensus       122 -------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~-----------------------------Ll~~~~~~  165 (644)
                             +++|+++|++++..+.+|.||||+|+..|+.+++++                             |++ .|++
T Consensus       187 ~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~-~g~~  265 (682)
T PHA02876        187 ERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYD-AGFS  265 (682)
T ss_pred             HCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHH-CCCC
Confidence                   777777777777777777777777766666555443                             334 5666


Q ss_pred             ccccCCCCCcHHHHHHHcCCH-HHHHHHHHhcCCccCCcCCCCCchHHHHHHhcC-cHHHHHHHHHhcCCCcccCCCCCC
Q psy2733         166 LYLENSKGFNILNYAVLRGNM-KVTEKILALNRNLATVPKTSDGFTPLHVACFND-HIEIVELLVEKYKVNINALDLKKR  243 (644)
Q Consensus       166 ~~~~d~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g-~~~~v~~Ll~~~g~~in~~d~~G~  243 (644)
                      ++..+..|.||||+|+..|+. ++++.|++.++++..  .|..|.||||+|+..| ..+++++|+.. |++++..|..|.
T Consensus       266 vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~--~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~  342 (682)
T PHA02876        266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA--KNIKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYI  342 (682)
T ss_pred             CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCC
Confidence            666677777777777777664 466667776666544  4456777777777766 46677777666 677777777777


Q ss_pred             CHHHHHHHc-CCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCC--C-CccchHH
Q psy2733         244 TPLMAAVGQ-GQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGP--S-NEHGILL  319 (644)
Q Consensus       244 TpL~~Aa~~-g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~  319 (644)
                      ||||+|+.. ++.+++++|++.|++++.+|..|+||||+|+..++.++++.+.+.+..+........+.  . .......
T Consensus       343 TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~  422 (682)
T PHA02876        343 TPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPY  422 (682)
T ss_pred             cHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHH
Confidence            777777664 35667777777777777777777777777777776665555554443322111000000  0 0001124


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcchhhhcCC---cHHHHHHHHhhhhccccCccccchhhhh
Q psy2733         320 AVFLFLVKHGAPLSLENNNRQKPLDLILEDT---SLLNEIMEHAREYVTDLTNENNKVVTAI  378 (644)
Q Consensus       320 ~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~  378 (644)
                      .++++|+++|+++|.+|.+|+||||+|+..+   ++++.|+..    ..+....+..+.+++
T Consensus       423 ~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~----Gad~n~~d~~g~tpl  480 (682)
T PHA02876        423 MSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN----GADVNAINIQNQYPL  480 (682)
T ss_pred             HHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC----CCCCCCCCCCCCCHH
Confidence            5789999999999999999999999999644   344444443    334444444443443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.9e-37  Score=345.91  Aligned_cols=265  Identities=17%  Similarity=0.189  Sum_probs=183.1

Q ss_pred             HcCCHHHHHHHHHCC-CCCccc-CCCCCcHHHHHHh--cCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCC
Q psy2733           9 YQGCVEELNILLARG-ACVYYP-DDAGDTALHYAAF--GNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSN   83 (644)
Q Consensus         9 ~~G~~e~vk~LL~~G-a~~n~~-d~~G~TpLh~Aa~--~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (644)
                      +.++.++|++|++.| +++|.+ |..|.||||+|+.  .++.+++++| .+|++++.                       
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~-----------------------  207 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNL-----------------------  207 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCC-----------------------
Confidence            457888999999998 888888 8888999998764  3567888888 88888877                       


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCcccchhhHHHH---------HHHHHhCCCCCCCCCCCCCcHHHHHH-------
Q psy2733          84 LPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ---------DFVLLRNGCNVNIQDNNQDTPMHDAV-------  147 (644)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~---------v~~Ll~~gad~n~~d~~G~TpL~~A~-------  147 (644)
                                               .+..|.||||+|+         +++|+++|+++|.+|..|+||||+|+       
T Consensus       208 -------------------------kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~  262 (764)
T PHA02716        208 -------------------------QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNIN  262 (764)
T ss_pred             -------------------------CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccC
Confidence                                     6777788887774         67788888888888888888888653       


Q ss_pred             ------------------------------HcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHHh
Q psy2733         148 ------------------------------AKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL--RGNMKVTEKILAL  195 (644)
Q Consensus       148 ------------------------------~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~--~g~~~~v~~Ll~~  195 (644)
                                                    +.|+.+++++|++ .|++++.+|..|.||||+|+.  .++.+++++|++.
T Consensus       263 ~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe-~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~  341 (764)
T PHA02716        263 PEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ-PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEY  341 (764)
T ss_pred             HHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh-CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHc
Confidence                                          3455666666666 566666666666666666553  3456666666666


Q ss_pred             cCCccCCcCCCCCchHHHHHHh--------------cCcHHHHHHHHHhcCCCcccCCCCCCCHHHH----HHHcCCHHH
Q psy2733         196 NRNLATVPKTSDGFTPLHVACF--------------NDHIEIVELLVEKYKVNINALDLKKRTPLMA----AVGQGQTSV  257 (644)
Q Consensus       196 ~~~~~~~~~d~~g~T~Lh~A~~--------------~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~----Aa~~g~~~i  257 (644)
                      |+++..  .|..|+||||+|+.              .++.+++++|+++ |++++.+|..|+||||.    |...++.++
T Consensus       342 GADIN~--kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~a~n~~~~dI  418 (764)
T PHA02716        342 GNDLNE--PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICTAQNYMYYDI  418 (764)
T ss_pred             CCCCcc--CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHHHHhcChHHH
Confidence            665543  44566666666543              2456666666665 56666666666666662    122345566


Q ss_pred             HHHHHHCCC-------------------------------------------------------------CCCcccCCCC
Q psy2733         258 INYLMLRDV-------------------------------------------------------------ALDIQDIDGN  276 (644)
Q Consensus       258 v~~Ll~~ga-------------------------------------------------------------dvn~~d~~G~  276 (644)
                      +++|++.|+                                                             ++|.+|..|+
T Consensus       419 vklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~  498 (764)
T PHA02716        419 IDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGM  498 (764)
T ss_pred             HHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCC
Confidence            666655432                                                             1233455566


Q ss_pred             cHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCc
Q psy2733         277 GLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTS  351 (644)
Q Consensus       277 T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~  351 (644)
                      ||||+|+..++..                          ....+++++|+++||++|.+|.+|+||||+|+++++
T Consensus       499 TPLh~Aa~~g~~~--------------------------~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~  547 (764)
T PHA02716        499 TPLHVSIISHTNA--------------------------NIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNR  547 (764)
T ss_pred             CHHHHHHHcCCcc--------------------------chhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Confidence            6666666555421                          011367799999999999999999999999997663

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-37  Score=341.88  Aligned_cols=239  Identities=28%  Similarity=0.444  Sum_probs=153.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHH-----HHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHY-----AAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTT   75 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~-----Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~   75 (644)
                      .||||+|+..|+.++|++|++.|++++..+..|.||||+     |+..++.+++++                        
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~------------------------   91 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKL------------------------   91 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHH------------------------
Confidence            367777777777777777777777777777777777777     777777777776                        


Q ss_pred             ccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHH--HcCCHH
Q psy2733          76 EKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAV--AKGFEE  153 (644)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~--~~g~~~  153 (644)
                                                                       |+++|++++..|..|.||||+|+  ..|+.+
T Consensus        92 -------------------------------------------------Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~  122 (480)
T PHA03100         92 -------------------------------------------------LLEYGANVNAPDNNGITPLLYAISKKSNSYS  122 (480)
T ss_pred             -------------------------------------------------HHHCCCCCCCCCCCCCchhhHHHhcccChHH
Confidence                                                             55555555555666666666666  666666


Q ss_pred             HHHHHhcCCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhc
Q psy2733         154 IQLLLLSHPEVNLYLENSKGFNILNYAVLRG--NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKY  231 (644)
Q Consensus       154 iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~  231 (644)
                      ++++|++ .|++++..+..|.||||+|+..|  +.++++.|++.|+++..  .+..|.||||+|+..|+.+++++|++. 
T Consensus       123 iv~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~--~d~~g~tpL~~A~~~~~~~iv~~Ll~~-  198 (480)
T PHA03100        123 IVEYLLD-NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA--KNRYGYTPLHIAVEKGNIDVIKFLLDN-  198 (480)
T ss_pred             HHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc--ccCCCCCHHHHHHHhCCHHHHHHHHHc-
Confidence            6666666 45666666666666666666666  56666666666655443  334566666666666666666666655 


Q ss_pred             CCCcccCCCCC------CCHHHHHHHcCC--HHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHH
Q psy2733         232 KVNINALDLKK------RTPLMAAVGQGQ--TSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYE  303 (644)
Q Consensus       232 g~~in~~d~~G------~TpL~~Aa~~g~--~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~  303 (644)
                      |++++..+..|      .||||+|+..|+  .+++++|+++|++++.+|..|.||||+|+..++                
T Consensus       199 ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~----------------  262 (480)
T PHA03100        199 GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN----------------  262 (480)
T ss_pred             CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----------------
Confidence            56666665555      566666666666  666666666666666666666666666666555                


Q ss_pred             hhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhh
Q psy2733         304 EYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       304 ~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~  347 (644)
                                     .+++++|+++|+|++.+|..|.|||++|+
T Consensus       263 ---------------~~iv~~Ll~~gad~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        263 ---------------PEFVKYLLDLGANPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             ---------------HHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence                           44666666666666666666666666665

>KOG0510|consensus

Probab=100.00  E-value=1.9e-37  Score=332.33  Aligned_cols=296  Identities=23%  Similarity=0.288  Sum_probs=260.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      .||||+|++....+.+++|++.|++++.++.++.+|||+|+..|+.++.++| .++++++..+..+.++++.+.......
T Consensus        89 n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E  168 (929)
T KOG0510|consen   89 NTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVE  168 (929)
T ss_pred             CchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHH
Confidence            4899999999999999999999999999999999999999999999999999 889999998888888888777654432


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHh-----CCCCCCCCCCCCCcHHHHHH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLR-----NGCNVNIQDNNQDTPMHDAV  147 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~-----~gad~n~~d~~G~TpL~~A~  147 (644)
                                     ..+.+...+.+....+..++.++|.++       .++.+.     .+..+|..+..|.||||.|+
T Consensus       169 ---------------~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv  233 (929)
T KOG0510|consen  169 ---------------AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV  233 (929)
T ss_pred             ---------------HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhh
Confidence                           223455666777778999999999996       777777     77889999999999999999


Q ss_pred             HcCCHHHHHHHhcCCCCC---------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHH
Q psy2733         148 AKGFEEIQLLLLSHPEVN---------------LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPL  212 (644)
Q Consensus       148 ~~g~~~iv~~Ll~~~~~~---------------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~L  212 (644)
                      ..|+.++++.+|+. +..               ++..|++|.||||+|++.|+.+.+..|+..|+++..  ++.++.|||
T Consensus       234 e~g~~e~lk~~L~n-~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~--kn~d~~spL  310 (929)
T KOG0510|consen  234 EGGDIEMLKMCLQN-GKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS--KNKDEESPL  310 (929)
T ss_pred             hcCCHHHHHHHHhC-ccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc--cCCCCCCch
Confidence            99999999999984 322               345688999999999999999999999999998877  557899999


Q ss_pred             HHHHhcCcHHHHHHHHH-hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---cccCCCCcHHHHHHHcCCc
Q psy2733         213 HVACFNDHIEIVELLVE-KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD---IQDIDGNGLLHFLFIKKNF  288 (644)
Q Consensus       213 h~A~~~g~~~~v~~Ll~-~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn---~~d~~G~T~Lh~A~~~~~~  288 (644)
                      |.||+.|+.++|+.||+ ..-...|..|..|+||||+|++.|+.+++++|+++|++..   ..|.+|+||||+|+..|+ 
T Consensus       311 H~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~-  389 (929)
T KOG0510|consen  311 HFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGN-  389 (929)
T ss_pred             HHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhcc-
Confidence            99999999999999998 4446788999999999999999999999999999999987   569999999999999999 


Q ss_pred             ccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchh
Q psy2733         289 YKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDL  345 (644)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~  345 (644)
                                                    ..+++.|+.+||+++.+|+.|.|++++
T Consensus       390 ------------------------------~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  390 ------------------------------TSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             ------------------------------HHHHHHHHHcCCceeeccccccccccc
Confidence                                          569999999999999999999999995

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.7e-37  Score=338.69  Aligned_cols=254  Identities=20%  Similarity=0.221  Sum_probs=232.7

Q ss_pred             CcHHHHHHHcC---CHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcC-CHHHHHHH-hhccCCCccchhhhhhhhhcccc
Q psy2733           1 KTLLHILAYQG---CVEELNILLARGACVYYPDDAGDTALHYAAFGN-KPDAIQIN-SHVSGANRSRKHIYKERHRTVTT   75 (644)
Q Consensus         1 ~TpLh~Aa~~G---~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g-~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~   75 (644)
                      +||||+|+..|   +.+++++|++.|+++|.+|..|+||||+|+..| +.+++++| ..|++++.               
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~---------------  112 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA---------------  112 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCC---------------
Confidence            59999999999   999999999999999999999999999999999 59999999 99999988               


Q ss_pred             ccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH---------HHHHHhCCCCCCCCCCCCCcHHHHH
Q psy2733          76 EKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ---------DFVLLRNGCNVNIQDNNQDTPMHDA  146 (644)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~---------v~~Ll~~gad~n~~d~~G~TpL~~A  146 (644)
                                                       .+..|.||||+++         +++|+++|++++..|..|.||||+|
T Consensus       113 ---------------------------------~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a  159 (471)
T PHA03095        113 ---------------------------------KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL  159 (471)
T ss_pred             ---------------------------------CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence                                             7778888888875         8899999999999999999999999


Q ss_pred             HHcC--CHHHHHHHhcCCCCCccccCCCCCcHHHHHHHc--CCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcH-
Q psy2733         147 VAKG--FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR--GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHI-  221 (644)
Q Consensus       147 ~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~-  221 (644)
                      +..+  +.+++++|++ .|++++..+..|.||||+|+..  ++.++++.|++.|+++..  .|..|+||||+|+..|+. 
T Consensus       160 ~~~~~~~~~iv~~Ll~-~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~--~d~~g~tpLh~Aa~~~~~~  236 (471)
T PHA03095        160 LKSRNANVELLRLLID-AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA--TDMLGNTPLHSMATGSSCK  236 (471)
T ss_pred             HHcCCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHhcCCch
Confidence            9876  6899999999 7999999999999999999975  788999999999998766  678999999999999874 


Q ss_pred             -HHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCch
Q psy2733         222 -EIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVP  300 (644)
Q Consensus       222 -~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~  300 (644)
                       .+++.|+.. |+++|.+|..|+||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|+..++             
T Consensus       237 ~~~v~~ll~~-g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~-------------  302 (471)
T PHA03095        237 RSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNN-------------  302 (471)
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCC-------------
Confidence             578888887 89999999999999999999999999999999999999999999999999999999             


Q ss_pred             hHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCC
Q psy2733         301 IYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENN  337 (644)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~  337 (644)
                                        .+++++|+++|++++....
T Consensus       303 ------------------~~~v~~LL~~~~~~~~~~~  321 (471)
T PHA03095        303 ------------------GRAVRAALAKNPSAETVAA  321 (471)
T ss_pred             ------------------HHHHHHHHHhCCCHHHHHH
Confidence                              5678888888877654433

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=330.24  Aligned_cols=261  Identities=16%  Similarity=0.123  Sum_probs=220.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCC--HHHHHHH-hhccCCCc-cchhhhhhhhhccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK--PDAIQIN-SHVSGANR-SRKHIYKERHRTVTTE   76 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~--~eiv~lL-~~~a~~~~-~~~~~~~~~~~~~~~~   76 (644)
                      +||||+||..|+.++|++|+++|++++.+|..|+||||+|+..++  .+++++| .+|++++. .+..+.++++.+..  
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~--  150 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTD--  150 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHC--
Confidence            699999999999999999999999999999999999999998764  7899999 99999985 35555666542210  


Q ss_pred             cccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH---------HHHHHhCCCCCCCCCCCCCcHHHHHH
Q psy2733          77 KVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ---------DFVLLRNGCNVNIQDNNQDTPMHDAV  147 (644)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~---------v~~Ll~~gad~n~~d~~G~TpL~~A~  147 (644)
                                    .....++++...+.+....+..|.||||+++         +++|+++|++++.+|.+|.||||+|+
T Consensus       151 --------------~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa  216 (446)
T PHA02946        151 --------------PSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC  216 (446)
T ss_pred             --------------CChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence                          1112234455566777778999999999874         88999999999999999999999999


Q ss_pred             HcC--CHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCC-HHHHHHHHHhcCCccC-------------------CcCC
Q psy2733         148 AKG--FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN-MKVTEKILALNRNLAT-------------------VPKT  205 (644)
Q Consensus       148 ~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~~~-------------------~~~d  205 (644)
                      ..|  +.+++++|+.  +++++.+|..|.||||+|+..++ .++++.|++.++....                   ...+
T Consensus       217 ~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~  294 (446)
T PHA02946        217 SKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGK  294 (446)
T ss_pred             HcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCc
Confidence            986  8899999985  79999999999999999999988 5899999988754211                   1112


Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHc
Q psy2733         206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIK  285 (644)
Q Consensus       206 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~  285 (644)
                      ..|.||||+|+..|+.+++++|+++ |       ..|.||||+|+..|+.+++++|+.+|+++|.+ .+|.||||+|+..
T Consensus       295 ~~~~TpLh~Aa~~g~~eivk~Ll~~-~-------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~  365 (446)
T PHA02946        295 QYDSTDFKMAVEVGSIRCVKYLLDN-D-------IICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRL  365 (446)
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHC-C-------CccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHc
Confidence            3578999999999999999999987 3       25799999999999999999999999999996 6899999999999


Q ss_pred             CCc
Q psy2733         286 KNF  288 (644)
Q Consensus       286 ~~~  288 (644)
                      ++.
T Consensus       366 ~~~  368 (446)
T PHA02946        366 NNP  368 (446)
T ss_pred             CCH
Confidence            993

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=336.46  Aligned_cols=226  Identities=22%  Similarity=0.207  Sum_probs=127.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      .||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++| ..+...+.                   
T Consensus        38 ~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-------------------   98 (477)
T PHA02878         38 FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV-------------------   98 (477)
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc-------------------
Confidence            3899999999999999999999999999999999999999999999999998 55443322                   


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcC--
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKG--  150 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g--  150 (644)
                                                     ..+.++++.++       ++.|+..+.+.+...  ....+..+...+  
T Consensus        99 -------------------------------~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~  145 (477)
T PHA02878         99 -------------------------------FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDII  145 (477)
T ss_pred             -------------------------------ccchhhHHHHHHcCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhH
Confidence                                           11222333332       344444332211100  000000000111  


Q ss_pred             CHHHHHHHhcCCCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHH
Q psy2733         151 FEEIQLLLLSHPEVNLYLENSK-GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE  229 (644)
Q Consensus       151 ~~~iv~~Ll~~~~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  229 (644)
                      ..+++++|++ .|++++..+.. |.||||+|+..|+.++++.|++.|+++..  .|..|+||||+|+..|+.+++++|++
T Consensus       146 ~~~iv~~Ll~-~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~--~d~~g~tpLh~A~~~~~~~iv~~Ll~  222 (477)
T PHA02878        146 EAEITKLLLS-YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI--PDKTNNSPLHHAVKHYNKPIVHILLE  222 (477)
T ss_pred             HHHHHHHHHH-cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            1235555555 45555555544 55555555555555555555555544433  33445555555555555555555555


Q ss_pred             hcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcccC-CCCcHHHHH
Q psy2733         230 KYKVNINALDLKKRTPLMAAVGQ-GQTSVINYLMLRDVALDIQDI-DGNGLLHFL  282 (644)
Q Consensus       230 ~~g~~in~~d~~G~TpL~~Aa~~-g~~~iv~~Ll~~gadvn~~d~-~G~T~Lh~A  282 (644)
                      . |++++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|
T Consensus       223 ~-ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        223 N-GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             c-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            4 455555555555555555543 345555555555555555543 455555555

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.5e-36  Score=338.33  Aligned_cols=292  Identities=14%  Similarity=0.117  Sum_probs=195.0

Q ss_pred             CcHHHHHHH--cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCC--HHHHHHH-hhccCCCccchhhhhhhhhcccc
Q psy2733           1 KTLLHILAY--QGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK--PDAIQIN-SHVSGANRSRKHIYKERHRTVTT   75 (644)
Q Consensus         1 ~TpLh~Aa~--~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~--~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~   75 (644)
                      +||||+|+.  +|+.+++++|+++|++++.+|..|+||||+|+..|+  .++|++| ..|++++..+..+.++++.++..
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~  257 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIIN  257 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            589999865  468999999999999999999999999999999995  4899999 99999999999999988866432


Q ss_pred             ccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhH----------HHHHHHHHhCCCCCCCCCCCCCcHHHH
Q psy2733          76 EKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL----------IKQDFVLLRNGCNVNIQDNNQDTPMHD  145 (644)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~----------~a~v~~Ll~~gad~n~~d~~G~TpL~~  145 (644)
                      .......            ..+.+.......  ........++          ..+++.|++.|+++|.+|..|+||||+
T Consensus       258 a~n~~~E------------IvkiLie~~d~n--~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~  323 (764)
T PHA02716        258 IDNINPE------------ITNIYIESLDGN--KVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQ  323 (764)
T ss_pred             hhccCHH------------HHHHHHHhcccc--ccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHH
Confidence            1000000            000000000000  0000001111          112556666666666666666666666


Q ss_pred             HHH--cCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHH--------------cCCHHHHHHHHHhcCCccCCcCCCCCc
Q psy2733         146 AVA--KGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL--------------RGNMKVTEKILALNRNLATVPKTSDGF  209 (644)
Q Consensus       146 A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~--------------~g~~~~v~~Ll~~~~~~~~~~~d~~g~  209 (644)
                      |+.  .++.+++++|++ .|++++.+|..|+||||+|+.              .++.++++.|++.|+++..  .+..|+
T Consensus       324 Aaa~~~~~~eIVklLLe-~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~--kn~~G~  400 (764)
T PHA02716        324 YILRHNISTDIIKLLHE-YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA--VNCLGY  400 (764)
T ss_pred             HHHHhCCCchHHHHHHH-cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC--cCCCCC
Confidence            543  235566666666 566666666666666666543              2455666666666655544  445566


Q ss_pred             hHHHHH----HhcCcHHHHHHHHHhc------------------------------------------------------
Q psy2733         210 TPLHVA----CFNDHIEIVELLVEKY------------------------------------------------------  231 (644)
Q Consensus       210 T~Lh~A----~~~g~~~~v~~Ll~~~------------------------------------------------------  231 (644)
                      ||||.|    ...++.+++++|++..                                                      
T Consensus       401 TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~  480 (764)
T PHA02716        401 TPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVY  480 (764)
T ss_pred             ChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhh
Confidence            666621    1234455555554421                                                      


Q ss_pred             ------CCCcccCCCCCCCHHHHHHHcCCH-----HHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCch
Q psy2733         232 ------KVNINALDLKKRTPLMAAVGQGQT-----SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVP  300 (644)
Q Consensus       232 ------g~~in~~d~~G~TpL~~Aa~~g~~-----~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~  300 (644)
                            +.++|..|..|+||||+|+..|+.     +++++|++.|+++|.+|.+|+||||+|+.+++.+           
T Consensus       481 ~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~-----------  549 (764)
T PHA02716        481 HCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLS-----------  549 (764)
T ss_pred             HHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCcc-----------
Confidence                  234566788999999999999886     4559999999999999999999999999999732           


Q ss_pred             hHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCC
Q psy2733         301 IYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLE  335 (644)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~  335 (644)
                                     ....+++++|+++|++++..
T Consensus       550 ---------------~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        550 ---------------GHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             ---------------ccHHHHHHHHHhcCCCcchH
Confidence                           11247999999999998876

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4e-36  Score=326.75  Aligned_cols=239  Identities=21%  Similarity=0.295  Sum_probs=221.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +++||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++                             
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~-----------------------------   53 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKL-----------------------------   53 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHH-----------------------------
Confidence            689999999999999999999999999999999999999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++..+.+|.||||+|+..|+.+++++|++
T Consensus        54 --------------------------------------------Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~   89 (413)
T PHA02875         54 --------------------------------------------LMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD   89 (413)
T ss_pred             --------------------------------------------HHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence                                                        777888888888899999999999999999999999


Q ss_pred             CCCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC
Q psy2733         161 HPEVNL-YLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD  239 (644)
Q Consensus       161 ~~~~~~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d  239 (644)
                       .|... +..+..|.||||+|+..|+.++++.|++.|+++..  .+..|.||||+|+..|+.+++++|++. |++++.+|
T Consensus        90 -~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~--~~~~g~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d  165 (413)
T PHA02875         90 -LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI--PNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIED  165 (413)
T ss_pred             -cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCC
Confidence             55544 45577899999999999999999999999998765  557899999999999999999999998 89999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCC-cHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchH
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN-GLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGIL  318 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~-T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (644)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..++                               
T Consensus       166 ~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~-------------------------------  214 (413)
T PHA02875        166 CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK-------------------------------  214 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCC-------------------------------
Confidence            9999999999999999999999999999999998875 89999999998                               


Q ss_pred             HHHHHHHHHcCCCCCCC---CCCCCCcchhhh
Q psy2733         319 LAVFLFLVKHGAPLSLE---NNNRQKPLDLIL  347 (644)
Q Consensus       319 ~~iv~~Ll~~Gadi~~~---n~~G~TpL~~A~  347 (644)
                      .+++++|+++|+|++..   +..|.||++++.
T Consensus       215 ~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        215 IDIVRLFIKRGADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             HHHHHHHHHCCcCcchHhhcCCCchHHHHHHH
Confidence            67999999999999876   678899999875

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-36  Score=329.78  Aligned_cols=313  Identities=17%  Similarity=0.175  Sum_probs=220.8

Q ss_pred             CcHHHHHHHcC---CHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcC--CHHHHHHH-hhccCC--Cccchhhhhhhhhc
Q psy2733           1 KTLLHILAYQG---CVEELNILLARGACVYYPDDAGDTALHYAAFGN--KPDAIQIN-SHVSGA--NRSRKHIYKERHRT   72 (644)
Q Consensus         1 ~TpLh~Aa~~G---~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g--~~eiv~lL-~~~a~~--~~~~~~~~~~~~~~   72 (644)
                      +||||+|+..|   +.++|++||++||+++.+|..|+||||+|+..+  +.|+|++| ..|++.  +.......++++..
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y  121 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSY  121 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHH
Confidence            69999999997   599999999999999999999999999999977  79999999 886655  43332244444433


Q ss_pred             cccccccC--------------------------CCCCCCCCCCCcccccccccccccCCC-------CCCcccchhhHH
Q psy2733          73 VTTEKVQR--------------------------PSNLPKVEPETPMLNMKFIPRMNEDML-------DTPSAECSGILI  119 (644)
Q Consensus        73 ~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~t~L~~  119 (644)
                      +.......                          ...+...........++++...+.+..       ..+...++|+.+
T Consensus       122 ~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~  201 (672)
T PHA02730        122 MSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLH  201 (672)
T ss_pred             HHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHH
Confidence            33111000                          000111111122222444444444442       234445543333


Q ss_pred             -H-------------HHHHHHhCCCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHhc-----------------------
Q psy2733         120 -K-------------QDFVLLRNGCNVNIQDNNQDTPMHD--AVAKGFEEIQLLLLS-----------------------  160 (644)
Q Consensus       120 -a-------------~v~~Ll~~gad~n~~d~~G~TpL~~--A~~~g~~~iv~~Ll~-----------------------  160 (644)
                       .             ++++|+++|+++|.+|.+|.||||+  |...|+.+++++|++                       
T Consensus       202 ~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~  281 (672)
T PHA02730        202 YYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADY  281 (672)
T ss_pred             HHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHh
Confidence             2             2888888999998888889999885  444567888888887                       


Q ss_pred             --------CCCCCccc--------------------cCCCCCc---------------------HHHHHHHcC---CHHH
Q psy2733         161 --------HPEVNLYL--------------------ENSKGFN---------------------ILNYAVLRG---NMKV  188 (644)
Q Consensus       161 --------~~~~~~~~--------------------~d~~g~t---------------------pL~~A~~~g---~~~~  188 (644)
                              ..|++...                    .+..|.+                     .|+.=...+   +.++
T Consensus       282 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieI  361 (672)
T PHA02730        282 LNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPI  361 (672)
T ss_pred             hhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHH
Confidence                    02556554                    4555654                     555555544   5888


Q ss_pred             HHHHHHhcCCccCCcCCCCCchHHHHHHhcCc----HHHHHHHHHhcCC--CcccCCCCCCCHHHH---HHHcC------
Q psy2733         189 TEKILALNRNLATVPKTSDGFTPLHVACFNDH----IEIVELLVEKYKV--NINALDLKKRTPLMA---AVGQG------  253 (644)
Q Consensus       189 v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~~g~--~in~~d~~G~TpL~~---Aa~~g------  253 (644)
                      ++.|+++|++++.  . ..|.||||+|+..++    .+++++|+++ |+  +++.+|..|.||||.   |...+      
T Consensus       362 velLIs~GAdIN~--k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~-Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~  437 (672)
T PHA02730        362 LRCMLDNGATMDK--T-TDNNYPLHDYFVNNNNIVDVNVVRFIVEN-NGHMAINHVSNNGRLCMYGLILSRFNNCGYHCY  437 (672)
T ss_pred             HHHHHHCCCCCCc--C-CCCCcHHHHHHHHcCCcchHHHHHHHHHc-CCCccccccccCCCchHhHHHHHHhcccccccc
Confidence            8888888888775  3 578899998887764    7889999887 44  688888888898883   33222      


Q ss_pred             ---CHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCC
Q psy2733         254 ---QTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGA  330 (644)
Q Consensus       254 ---~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Ga  330 (644)
                         ..+++++|+.+|+++|.+|..|.||||+|+..++                               .+++++|+++||
T Consensus       438 e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~-------------------------------~eive~LI~~GA  486 (672)
T PHA02730        438 ETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNN-------------------------------IQFARRLLEYGA  486 (672)
T ss_pred             chhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCC-------------------------------HHHHHHHHHCCC
Confidence               1356888888899999899889999999888877                               668889999999


Q ss_pred             CCCCCCC-CCCCcchhhhc
Q psy2733         331 PLSLENN-NRQKPLDLILE  348 (644)
Q Consensus       331 di~~~n~-~G~TpL~~A~~  348 (644)
                      ++|.+|. .|.|||++|+.
T Consensus       487 dIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        487 SVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             CCCCCCCcCCcCHHHHHHH
Confidence            9998886 58999998874

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.9e-36  Score=302.76  Aligned_cols=238  Identities=21%  Similarity=0.204  Sum_probs=206.2

Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCC
Q psy2733          10 QGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEP   89 (644)
Q Consensus        10 ~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (644)
                      .++.+++++|+++|++  .+|.+|+||||+|+..|+.+++++                                      
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~--------------------------------------   48 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCT--------------------------------------   48 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHH--------------------------------------
Confidence            4788999999999985  589999999999999999999987                                      


Q ss_pred             CCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCcccc
Q psy2733          90 ETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE  169 (644)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~  169 (644)
                                                         |+++|++++..  +|+||||+|+..|+.+++++|++ .|++++.+
T Consensus        49 -----------------------------------Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~-~Gadvn~~   90 (284)
T PHA02791         49 -----------------------------------LLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLF-SGMDDSQF   90 (284)
T ss_pred             -----------------------------------HHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCC
Confidence                                               66777777665  47899999999999999999999 79999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCC-chHHHHHHhcCcHHHHHHHHHhcCCCcccCC-CCCCCHHH
Q psy2733         170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDG-FTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKRTPLM  247 (644)
Q Consensus       170 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g-~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d-~~G~TpL~  247 (644)
                      |..|.||||+|+..|+.+++++|++.++++..  .+..| .||||+|+..|+.+++++|+++. .+  ..| ..|.||||
T Consensus        91 d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~--~~~~g~~TpL~~Aa~~g~~eivk~LL~~~-~~--~~d~~~g~TpLh  165 (284)
T PHA02791         91 DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF--YGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PS--TFDLAILLSCIH  165 (284)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc--cCCCCCcHHHHHHHHcCCHHHHHHHHhcC-Cc--ccccccCccHHH
Confidence            99999999999999999999999999988755  44566 48999999999999999999873 32  223 35899999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCcccCCCCcH-HHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHH
Q psy2733         248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGL-LHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLV  326 (644)
Q Consensus       248 ~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~-Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll  326 (644)
                      +|+..|+.+++++|+++|++++.+|..|.|| ||+|+..++                               .+++++|+
T Consensus       166 ~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~-------------------------------~e~v~lLl  214 (284)
T PHA02791        166 ITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD-------------------------------LEMLQALF  214 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCC-------------------------------HHHHHHHH
Confidence            9999999999999999999999999999987 999999999                               78999999


Q ss_pred             HcCCCCCCCCCCCCCcchhhhcCCcHHHHHHHHhhhhccc
Q psy2733         327 KHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTD  366 (644)
Q Consensus       327 ~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~~~~~~~~~  366 (644)
                      ++||+++.+|..| +||+.|    ++.+.|++--.++..+
T Consensus       215 ~~Ga~in~~~~~~-~~l~~~----e~~~~ll~~~~~~~~~  249 (284)
T PHA02791        215 KYDINIYSVNLEN-VLLDDA----EIAKMIIEKHVEYKSD  249 (284)
T ss_pred             HCCCCCccCcccC-ccCCCH----HHHHHHHHhhhhhccc
Confidence            9999999999955 888654    3677777655555443

>KOG0510|consensus

Probab=100.00  E-value=3e-36  Score=323.10  Aligned_cols=305  Identities=22%  Similarity=0.271  Sum_probs=192.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +|++|.|+..+.+      ++.-+..+..|..|.||||+|+.....+.|++| ..|++.+..+.....+++.+.......
T Consensus        62 d~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s  135 (929)
T KOG0510|consen   62 DTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYS  135 (929)
T ss_pred             hhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHH
Confidence            4889999998865      444456677899999999999999999999999 999999885555544444443322111


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFE  152 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~  152 (644)
                                     ....+...+.+.+..+..+.||||+|+       .+.|++.|+++...|.+|.+|+|.|++.|..
T Consensus       136 ---------------~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~  200 (929)
T KOG0510|consen  136 ---------------CLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSK  200 (929)
T ss_pred             ---------------HHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcch
Confidence                           122223333444445555556666653       4555566666665556666666666666666


Q ss_pred             HHHHHHhcCC----CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCc-------------CCCCCchHHHHH
Q psy2733         153 EIQLLLLSHP----EVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVP-------------KTSDGFTPLHVA  215 (644)
Q Consensus       153 ~iv~~Ll~~~----~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-------------~d~~g~T~Lh~A  215 (644)
                      +..+..+.+.    +..+|..++.|.||||.|+..|+.++++.+|+.++......             .|++|.||||+|
T Consensus       201 e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a  280 (929)
T KOG0510|consen  201 ECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYA  280 (929)
T ss_pred             hhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHH
Confidence            6666555522    23455555556666666666666666666665554433322             245556666666


Q ss_pred             HhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-CC-CCCCcccCCCCcHHHHHHHcCCcccccc
Q psy2733         216 CFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML-RD-VALDIQDIDGNGLLHFLFIKKNFYKTPI  293 (644)
Q Consensus       216 ~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~-~g-advn~~d~~G~T~Lh~A~~~~~~~~~~~  293 (644)
                      ++.|+.+.++.|+.. |++++.++.++.||||.||.+|+.+.++.|++ .| ...|..|..|+||||+|+..|+      
T Consensus       281 ~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH------  353 (929)
T KOG0510|consen  281 ARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH------  353 (929)
T ss_pred             HHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH------
Confidence            666666666666655 56666666666666666666666666666665 22 3345555556666666665555      


Q ss_pred             cccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCC---CCCCCCCCcchhhhcCCcH--HHHHHH
Q psy2733         294 TREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLS---LENNNRQKPLDLILEDTSL--LNEIME  358 (644)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~---~~n~~G~TpL~~A~~~~~~--~~~l~~  358 (644)
                                               ..++++|++.||...   ..|.+|.||||+|+.+++.  ++.++.
T Consensus       354 -------------------------~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~  398 (929)
T KOG0510|consen  354 -------------------------DRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS  398 (929)
T ss_pred             -------------------------HHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH
Confidence                                     779999999999987   4599999999999976543  444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-34  Score=315.21  Aligned_cols=278  Identities=18%  Similarity=0.305  Sum_probs=231.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           2 TLLHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~-Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      ..|..|+..|+++.|+.|++. +..++..+..|.||||+|+..|+.++|++| ..|++++.                   
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~-------------------   63 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINH-------------------   63 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-------------------
Confidence            358899999999999999986 556888899999999999999999999998 77777766                   


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFE  152 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~  152 (644)
                                                   .+..+.|||+.|+       +++|+++|++++..          +....+.
T Consensus        64 -----------------------------~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~----------~~~~~~~  104 (434)
T PHA02874         64 -----------------------------INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL----------PIPCIEK  104 (434)
T ss_pred             -----------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc----------hhccCCH
Confidence                                         5566777777774       77788877776432          2233466


Q ss_pred             HHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcC
Q psy2733         153 EIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK  232 (644)
Q Consensus       153 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g  232 (644)
                      ++++.|++ .|++++.++..|.||||+|+..|+.+++++|++.|+++..  .|..|.||||+|+..|+.+++++|++. |
T Consensus       105 ~~i~~ll~-~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~--~d~~g~tpLh~A~~~~~~~iv~~Ll~~-g  180 (434)
T PHA02874        105 DMIKTILD-CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI--EDDNGCYPIHIAIKHNFFDIIKLLLEK-G  180 (434)
T ss_pred             HHHHHHHH-CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC--cCCCCCCHHHHHHHCCcHHHHHHHHHC-C
Confidence            77888887 6889999999999999999999999999999999988765  568899999999999999999999998 8


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCC
Q psy2733         233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPS  312 (644)
Q Consensus       233 ~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (644)
                      ++++..|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..+.                         
T Consensus       181 ~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-------------------------  235 (434)
T PHA02874        181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-------------------------  235 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-------------------------
Confidence            9999999999999999999999999999999999999999999999999998654                         


Q ss_pred             CccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCC---cHHHHHHHHhhhhccccCccccchhhhh
Q psy2733         313 NEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDT---SLLNEIMEHAREYVTDLTNENNKVVTAI  378 (644)
Q Consensus       313 ~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~  378 (644)
                             +.+.+|+ .|++++.+|.+|+||||+|+..+   ++++.|+.    ...+....+..+.+++
T Consensus       236 -------~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~----~gad~n~~d~~g~TpL  292 (434)
T PHA02874        236 -------SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLY----HKADISIKDNKGENPI  292 (434)
T ss_pred             -------HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHH----CcCCCCCCCCCCCCHH
Confidence                   3556666 69999999999999999999654   34444443    2334444444444444

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-34  Score=319.88  Aligned_cols=257  Identities=20%  Similarity=0.250  Sum_probs=222.8

Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhc--CCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCC
Q psy2733          10 QGCVEELNILLARGACVYYPDDAGDTALHYAAFG--NKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPK   86 (644)
Q Consensus        10 ~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~--g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (644)
                      ..+.++|++|+++|+++|.+ ..|.||||+++..  ++.++|++| .+|+++|.                          
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~--------------------------   65 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNY--------------------------   65 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccC--------------------------
Confidence            57899999999999999998 6799999866544  378999999 99999986                          


Q ss_pred             CCCCCcccccccccccccCCCCCCcccchhhHHH-------------HHHHHHhCCCCCCCCCCCCCcHHHHHHHc---C
Q psy2733          87 VEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK-------------QDFVLLRNGCNVNIQDNNQDTPMHDAVAK---G  150 (644)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a-------------~v~~Ll~~gad~n~~d~~G~TpL~~A~~~---g  150 (644)
                                            .+ .+.|||+.+             ++++|+++|+++|.+|..|.||||.|+..   |
T Consensus        66 ----------------------~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~  122 (494)
T PHA02989         66 ----------------------KG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNIN  122 (494)
T ss_pred             ----------------------CC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccC
Confidence                                  21 234555543             48899999999999999999999988765   6


Q ss_pred             CHHHHHHHhcCCCCCc-cccCCCCCcHHHHHHHc--CCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcC----cHHH
Q psy2733         151 FEEIQLLLLSHPEVNL-YLENSKGFNILNYAVLR--GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFND----HIEI  223 (644)
Q Consensus       151 ~~~iv~~Ll~~~~~~~-~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g----~~~~  223 (644)
                      +.+++++|++ .|+++ +..+..|.||||+|+..  ++.++++.|++.|+++... .+..|.||||.|++.+    +.++
T Consensus       123 ~~eiv~~Ll~-~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~-~~~~g~tpL~~a~~~~~~~~~~~i  200 (494)
T PHA02989        123 NCDMLRFLLS-KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK-TSLYGLTPMNIYLRNDIDVISIKV  200 (494)
T ss_pred             cHHHHHHHHH-CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc-ccccCCChHHHHHhcccccccHHH
Confidence            8999999999 79999 89999999999999865  6899999999999987653 3478999999998764    8999


Q ss_pred             HHHHHHhcCCCcccCCCCCCCHHHHHHHcC------CHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccC
Q psy2733         224 VELLVEKYKVNINALDLKKRTPLMAAVGQG------QTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREK  297 (644)
Q Consensus       224 v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g------~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~  297 (644)
                      +++|+++ |++++..|..|.||||.++..+      ..+++++|+. |+++|.+|..|+||||+|+..++          
T Consensus       201 v~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~----------  268 (494)
T PHA02989        201 IKYLIKK-GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDN----------  268 (494)
T ss_pred             HHHHHhC-CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcC----------
Confidence            9999998 8999999999999999877643      5678887665 79999999999999999999988          


Q ss_pred             CchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCc
Q psy2733         298 SVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTS  351 (644)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~  351 (644)
                                           .+++++|+++|||++.+|..|+|||++|++.++
T Consensus       269 ---------------------~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        269 ---------------------YEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             ---------------------HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence                                 779999999999999999999999999996543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-34  Score=295.31  Aligned_cols=214  Identities=17%  Similarity=0.214  Sum_probs=194.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.+++++|++.|++++.++  |+||||+|+..|+.+++++                             
T Consensus        31 ~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~l-----------------------------   79 (284)
T PHA02791         31 HSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKI-----------------------------   79 (284)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHH-----------------------------
Confidence            699999999999999999999999998764  7899999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |++.|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        80 --------------------------------------------LL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~  115 (284)
T PHA02791         80 --------------------------------------------LLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVK  115 (284)
T ss_pred             --------------------------------------------HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                        778888999999999999999999999999999999


Q ss_pred             CCCCCccccCCCCC-cHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC
Q psy2733         161 HPEVNLYLENSKGF-NILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD  239 (644)
Q Consensus       161 ~~~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d  239 (644)
                       .|++++.++..|+ ||||+|+..|+.+++++|++.++....   ...|.||||+|+..|+.+++++|++. |++++.+|
T Consensus       116 -~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d---~~~g~TpLh~Aa~~g~~eiv~lLL~~-gAd~n~~d  190 (284)
T PHA02791        116 -KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---LAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNN  190 (284)
T ss_pred             -CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc---cccCccHHHHHHHcCCHHHHHHHHHC-CCCCCccc
Confidence             7999999998885 899999999999999999998754321   13589999999999999999999998 89999999


Q ss_pred             CCCCCH-HHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchH
Q psy2733         240 LKKRTP-LMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGIL  318 (644)
Q Consensus       240 ~~G~Tp-L~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (644)
                      ..|.|| ||+|+..|+.+++++|+++|+++|.+|..| ++|      +.                               
T Consensus       191 ~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~-------------------------------  232 (284)
T PHA02791        191 SLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DD-------------------------------  232 (284)
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CC-------------------------------
Confidence            999987 999999999999999999999999999854 555      33                               


Q ss_pred             HHHHHHHHHcCCCC
Q psy2733         319 LAVFLFLVKHGAPL  332 (644)
Q Consensus       319 ~~iv~~Ll~~Gadi  332 (644)
                      .|++++|+++-++.
T Consensus       233 ~e~~~~ll~~~~~~  246 (284)
T PHA02791        233 AEIAKMIIEKHVEY  246 (284)
T ss_pred             HHHHHHHHHhhhhh
Confidence            67999999988764

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-34  Score=322.97  Aligned_cols=197  Identities=14%  Similarity=0.041  Sum_probs=143.8

Q ss_pred             CcHHHHHHHc---CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHH----HHHHH-hhccCCCccchhhhhhhhhc
Q psy2733           1 KTLLHILAYQ---GCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPD----AIQIN-SHVSGANRSRKHIYKERHRT   72 (644)
Q Consensus         1 ~TpLh~Aa~~---G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~e----iv~lL-~~~a~~~~~~~~~~~~~~~~   72 (644)
                      +||||+|++.   |+.++|++||+.|++++.+|..|+||||+|+..|+.+    ++++| ..+...+.....  ...+.+
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~--~~~~~a  110 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFN--IFSYMK  110 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcc--hHHHHH
Confidence            6999998665   8899999999999999999999999999999999955    45666 444333332110  111111


Q ss_pred             cccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHH---------HHHHHHhCCCCCCCCCC---CC-
Q psy2733          73 VTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK---------QDFVLLRNGCNVNIQDN---NQ-  139 (644)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a---------~v~~Ll~~gad~n~~d~---~G-  139 (644)
                                     ........++++...+.+....+..|.|||+++         ++++|+++|+++|..|.   .| 
T Consensus       111 ---------------~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~  175 (661)
T PHA02917        111 ---------------SKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGY  175 (661)
T ss_pred             ---------------hhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccc
Confidence                           111122345666777888888899999999854         28999999999986653   34 


Q ss_pred             ----------CcHHHHHHH-----------cCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCH--HHHHHHHHhc
Q psy2733         140 ----------DTPMHDAVA-----------KGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNM--KVTEKILALN  196 (644)
Q Consensus       140 ----------~TpL~~A~~-----------~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~--~~v~~Ll~~~  196 (644)
                                .||||+|+.           .++.+++++|++ .|++++.+|.+|.||||+|+..|+.  ++|+.|++ |
T Consensus       176 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g  253 (661)
T PHA02917        176 AYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-G  253 (661)
T ss_pred             ccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-C
Confidence                      499999986           468899999999 7999999999999999999999985  78988875 6


Q ss_pred             CCccCC--cCCCCCchHHHHHH
Q psy2733         197 RNLATV--PKTSDGFTPLHVAC  216 (644)
Q Consensus       197 ~~~~~~--~~d~~g~T~Lh~A~  216 (644)
                      ++....  ..|..|.+|+|+|+
T Consensus       254 ~d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        254 IDNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             CcccccccccCcccccchHHHH
Confidence            544321  12234455555555

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.1e-34  Score=314.42  Aligned_cols=228  Identities=29%  Similarity=0.403  Sum_probs=216.1

Q ss_pred             CcHHHH-----HHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH--hcCCHHHHHHHhhccCCCccchhhhhhhhhcc
Q psy2733           1 KTLLHI-----LAYQGCVEELNILLARGACVYYPDDAGDTALHYAA--FGNKPDAIQINSHVSGANRSRKHIYKERHRTV   73 (644)
Q Consensus         1 ~TpLh~-----Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa--~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~   73 (644)
                      +||||+     |+..|+.+++++|++.|++++..|..|.||||+|+  ..|+.+++++                      
T Consensus        69 ~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~----------------------  126 (480)
T PHA03100         69 STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEY----------------------  126 (480)
T ss_pred             cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHH----------------------
Confidence            489999     99999999999999999999999999999999999  9999999987                      


Q ss_pred             ccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC--C
Q psy2733          74 TTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKG--F  151 (644)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g--~  151 (644)
                                                                         |+++|++++..+..|.||||+|+..|  +
T Consensus       127 ---------------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  155 (480)
T PHA03100        127 ---------------------------------------------------LLDNGANVNIKNSDGENLLHLYLESNKID  155 (480)
T ss_pred             ---------------------------------------------------HHHcCCCCCccCCCCCcHHHHHHHcCCCh
Confidence                                                               78888899999999999999999999  9


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCC------chHHHHHHhcCc--HHH
Q psy2733         152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDG------FTPLHVACFNDH--IEI  223 (644)
Q Consensus       152 ~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g------~T~Lh~A~~~g~--~~~  223 (644)
                      .+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.|+++..  .+..|      .||||.|+..|+  .++
T Consensus       156 ~~iv~~Ll~-~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~i  232 (480)
T PHA03100        156 LKILKLLID-KGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINA--GDIETLLFTIFETPLHIAACYNEITLEV  232 (480)
T ss_pred             HHHHHHHHH-CCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccC--CCCCCCcHHHHHhHHHHHHHhCcCcHHH
Confidence            999999999 7999999999999999999999999999999999988765  44566      899999999999  999


Q ss_pred             HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHH
Q psy2733         224 VELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYE  303 (644)
Q Consensus       224 v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~  303 (644)
                      +++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++                
T Consensus       233 v~~Ll~~-g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~----------------  295 (480)
T PHA03100        233 VNYLLSY-GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN----------------  295 (480)
T ss_pred             HHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCC----------------
Confidence            9999998 89999999999999999999999999999999999999999999999999999988                


Q ss_pred             hhhhcCCCCCccchHHHHHHHHHHcCCCCCCCC
Q psy2733         304 EYLSVGGPSNEHGILLAVFLFLVKHGAPLSLEN  336 (644)
Q Consensus       304 ~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n  336 (644)
                                     .+++++|+++|++++..+
T Consensus       296 ---------------~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        296 ---------------KEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             ---------------HHHHHHHHhcCCCHHHHH
Confidence                           679999999999987654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-33  Score=309.33  Aligned_cols=233  Identities=19%  Similarity=0.228  Sum_probs=205.3

Q ss_pred             CcHHHHHHHc--CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcC------CHHHHHHH-hhccCCCccchhhhhhhhh
Q psy2733           1 KTLLHILAYQ--GCVEELNILLARGACVYYPDDAGDTALHYAAFGN------KPDAIQIN-SHVSGANRSRKHIYKERHR   71 (644)
Q Consensus         1 ~TpLh~Aa~~--G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g------~~eiv~lL-~~~a~~~~~~~~~~~~~~~   71 (644)
                      +||||.++..  |+.++|++|+++||++|.++ .|.||||.|+.++      +.+++++| .+|++++.           
T Consensus        36 ~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~-----------  103 (494)
T PHA02989         36 NSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINL-----------  103 (494)
T ss_pred             CCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCC-----------
Confidence            4788766554  37899999999999999887 5799999998754      46899999 99999988           


Q ss_pred             ccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH----------HHHHHhCCCCC-CCCCCCCC
Q psy2733          72 TVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ----------DFVLLRNGCNV-NIQDNNQD  140 (644)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~----------v~~Ll~~gad~-n~~d~~G~  140 (644)
                                                           .+..|.|||+.++          +++|+++|+++ +..|..|+
T Consensus       104 -------------------------------------~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~  146 (494)
T PHA02989        104 -------------------------------------KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGY  146 (494)
T ss_pred             -------------------------------------CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCC
Confidence                                                 7778889988652          89999999999 79999999


Q ss_pred             cHHHHHHHc--CCHHHHHHHhcCCCCCccc-cCCCCCcHHHHHHHcC----CHHHHHHHHHhcCCccCCcCCCCCchHHH
Q psy2733         141 TPMHDAVAK--GFEEIQLLLLSHPEVNLYL-ENSKGFNILNYAVLRG----NMKVTEKILALNRNLATVPKTSDGFTPLH  213 (644)
Q Consensus       141 TpL~~A~~~--g~~~iv~~Ll~~~~~~~~~-~d~~g~tpL~~A~~~g----~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh  213 (644)
                      ||||+|+..  ++.+++++|++ .|++++. .+..|.||||+|+..+    +.+++++|++.|+++..  .+..|.|+||
T Consensus       147 tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~--~~~~~~t~l~  223 (494)
T PHA02989        147 NLLHMYLESFSVKKDVIKILLS-FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET--NNNGSESVLE  223 (494)
T ss_pred             CHHHHHHHhccCCHHHHHHHHH-cCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc--cCCccccHHH
Confidence            999999865  58999999999 7999988 6789999999998764    89999999999998766  4457899999


Q ss_pred             HHHhcC------cHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         214 VACFND------HIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       214 ~A~~~g------~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .++..+      ..+++++|+.  ++++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++
T Consensus       224 ~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        224 SFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             HHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            877643      4678887765  59999999999999999999999999999999999999999999999999999998

>KOG4412|consensus

Probab=100.00  E-value=5.7e-34  Score=255.25  Aligned_cols=200  Identities=31%  Similarity=0.409  Sum_probs=178.5

Q ss_pred             HHHHHhCCC-CCCCCCC-CCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHh-cCC
Q psy2733         122 DFVLLRNGC-NVNIQDN-NQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL-NRN  198 (644)
Q Consensus       122 v~~Ll~~ga-d~n~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~  198 (644)
                      ++.+++... .+|.++. +|+||||||+..|+.+++.+|++..+..++-+|..||||||+|+..|+.++|+.|+.+ +++
T Consensus        19 veel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad   98 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD   98 (226)
T ss_pred             HHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC
Confidence            455555544 5666654 9999999999999999999999778999999999999999999999999999999998 666


Q ss_pred             ccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcH
Q psy2733         199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL  278 (644)
Q Consensus       199 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~  278 (644)
                      ++.  .++.|.|+||||+-.|..+++++|+++ |+.++.+|..|.||||.|+.-|+.+++++|+..|+.+|.+|..|+||
T Consensus        99 vna--~tn~G~T~LHyAagK~r~eIaqlLle~-ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~Tp  175 (226)
T KOG4412|consen   99 VNA--TTNGGQTCLHYAAGKGRLEIAQLLLEK-GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTP  175 (226)
T ss_pred             cce--ecCCCcceehhhhcCChhhHHHHHHhc-CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccH
Confidence            655  557999999999999999999999999 79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHHHHHH
Q psy2733         279 LHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIME  358 (644)
Q Consensus       279 Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~  358 (644)
                      ||+|...++                               .+++.+|+++||+++..|+.| ||+-.|.  ..+...+++
T Consensus       176 L~~al~e~~-------------------------------~d~a~lLV~~gAd~~~edke~-t~~~~a~--~~l~~alk~  221 (226)
T KOG4412|consen  176 LHHALAEGH-------------------------------PDVAVLLVRAGADTDREDKEG-TALRIAC--NELLEALKE  221 (226)
T ss_pred             HHHHHhccC-------------------------------chHHHHHHHhccceeeccccC-chHHHHH--HHHHHHHHH
Confidence            999987777                               569999999999999999999 9988875  444444443

>KOG4177|consensus

Probab=100.00  E-value=3e-34  Score=326.55  Aligned_cols=324  Identities=22%  Similarity=0.295  Sum_probs=239.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      ||||.|+..|+++++++|+.+|+.++..+..|.||||.|++.+..+++++| ..|+++........+.++.+........
T Consensus       244 ~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i  323 (1143)
T KOG4177|consen  244 TPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEI  323 (1143)
T ss_pred             cHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHH
Confidence            789999999999999999999999999999999999999999999998888 8888888776666555544332211000


Q ss_pred             ---------CCCCCCCCCCC------------------------------------------cccccccccccccCCCCC
Q psy2733          81 ---------PSNLPKVEPET------------------------------------------PMLNMKFIPRMNEDMLDT  109 (644)
Q Consensus        81 ---------~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~  109 (644)
                               ..+...-...+                                          .......+...+.+....
T Consensus       324 ~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~  403 (1143)
T KOG4177|consen  324 VHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSA  403 (1143)
T ss_pred             HHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccC
Confidence                     00000000000                                          111123444455555556


Q ss_pred             CcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHhcCCCCCccccCCCCCcHHHHHH
Q psy2733         110 PSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAV  181 (644)
Q Consensus       110 ~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g-~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~  181 (644)
                      ...|.||+|.+.       ++++++.|++++..+..|+||+|+|+..| ..++...+++ .+.+++.....|+||||.|+
T Consensus       404 gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~-~g~~~n~~s~~G~T~Lhlaa  482 (1143)
T KOG4177|consen  404 GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQ-YGADPNAVSKQGFTPLHLAA  482 (1143)
T ss_pred             CCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhh-cCCCcchhccccCcchhhhh
Confidence            666666666664       66666677777777777777777777777 6666666666 67777777777777777777


Q ss_pred             HcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy2733         182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL  261 (644)
Q Consensus       182 ~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~L  261 (644)
                      ..|+.+++..|++.++....  ....|.|+||.|...+...+++.+++. |++++.++..|.||||.|+.+|+.++|++|
T Consensus       483 q~Gh~~~~~llle~~~~~~~--~~~~~l~~lhla~~~~~v~~~~~l~~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfL  559 (1143)
T KOG4177|consen  483 QEGHTEVVQLLLEGGANDNL--DAKKGLTPLHLAADEDTVKVAKILLEH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFL  559 (1143)
T ss_pred             ccCCchHHHHhhhcCCccCc--cchhccchhhhhhhhhhHHHHHHHhhc-CCceehhcccccchHHHHHhcCCchHHHHh
Confidence            77777777777776644333  225667777777777777777777776 899999999999999999999999999999


Q ss_pred             HHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCC
Q psy2733         262 MLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQK  341 (644)
Q Consensus       262 l~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~T  341 (644)
                      +++|+|++.+++.|+||||.|+..|+                               .+++.+|+++||++|..|.+|.|
T Consensus       560 Le~gAdv~ak~~~G~TPLH~Aa~~G~-------------------------------~~i~~LLlk~GA~vna~d~~g~T  608 (1143)
T KOG4177|consen  560 LEHGADVNAKDKLGYTPLHQAAQQGH-------------------------------NDIAELLLKHGASVNAADLDGFT  608 (1143)
T ss_pred             hhCCccccccCCCCCChhhHHHHcCh-------------------------------HHHHHHHHHcCCCCCcccccCcc
Confidence            99999999999999999999999998                               67999999999999999999999


Q ss_pred             cchhhhcCCc--HHHHHHHHh
Q psy2733         342 PLDLILEDTS--LLNEIMEHA  360 (644)
Q Consensus       342 pL~~A~~~~~--~~~~l~~~~  360 (644)
                      ||++|+..+.  ..+.++...
T Consensus       609 pL~iA~~lg~~~~~k~l~~~~  629 (1143)
T KOG4177|consen  609 PLHIAVRLGYLSVVKLLKVVT  629 (1143)
T ss_pred             hhHHHHHhcccchhhHHHhcc
Confidence            9999996543  344444433

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=9e-33  Score=306.35  Aligned_cols=194  Identities=17%  Similarity=0.304  Sum_probs=171.6

Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHHh
Q psy2733         122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKG---FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN---MKVTEKILAL  195 (644)
Q Consensus       122 v~~Ll~~gad~n~~d~~G~TpL~~A~~~g---~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~  195 (644)
                      +++|+++|+++|.+|..|+||||+|+..+   +.+++++|++ .|++++..|..|.||||+|+..|+   .+++++|++.
T Consensus        92 v~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~  170 (489)
T PHA02798         92 VKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIE-NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK  170 (489)
T ss_pred             HHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh
Confidence            77899999999999999999999999876   7899999999 799999999999999999999988   9999999999


Q ss_pred             cCCccCCcCCCCCchHHHHHHhc----CcHHHHHHHHHhcCCCcccCCCCCCCHHH-------HHHHcCCHHHHHHHHHC
Q psy2733         196 NRNLATVPKTSDGFTPLHVACFN----DHIEIVELLVEKYKVNINALDLKKRTPLM-------AAVGQGQTSVINYLMLR  264 (644)
Q Consensus       196 ~~~~~~~~~d~~g~T~Lh~A~~~----g~~~~v~~Ll~~~g~~in~~d~~G~TpL~-------~Aa~~g~~~iv~~Ll~~  264 (644)
                      |+++... .+..|.||||.++..    ++.+++++|+++ |++++..+..|.|+++       ++...++.+++++|+. 
T Consensus       171 gadin~~-~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~-Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-  247 (489)
T PHA02798        171 GVDINTH-NNKEKYDTLHCYFKYNIDRIDADILKLFVDN-GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-  247 (489)
T ss_pred             CCCcccc-cCcCCCcHHHHHHHhccccCCHHHHHHHHHC-CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-
Confidence            9887653 235789999998764    479999999998 8999999999999877       2445667888888765 


Q ss_pred             CCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcch
Q psy2733         265 DVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLD  344 (644)
Q Consensus       265 gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~  344 (644)
                      |+|+|.+|..|+||||+|+..++                               .+++++|+++|||++.+|..|+|||+
T Consensus       248 ~~dvN~~d~~G~TPL~~A~~~~~-------------------------------~~~v~~LL~~GAdin~~d~~G~TpL~  296 (489)
T PHA02798        248 YIDINQVDELGFNPLYYSVSHNN-------------------------------RKIFEYLLQLGGDINIITELGNTCLF  296 (489)
T ss_pred             cCCCCCcCcCCccHHHHHHHcCc-------------------------------HHHHHHHHHcCCcccccCCCCCcHHH
Confidence            69999999999999999999888                               67999999999999999999999999


Q ss_pred             hhhcCC
Q psy2733         345 LILEDT  350 (644)
Q Consensus       345 ~A~~~~  350 (644)
                      +|++.+
T Consensus       297 ~A~~~~  302 (489)
T PHA02798        297 TAFENE  302 (489)
T ss_pred             HHHHcC
Confidence            999554

>KOG4412|consensus

Probab=100.00  E-value=1.3e-33  Score=253.01  Aligned_cols=206  Identities=22%  Similarity=0.302  Sum_probs=187.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCC-CCcccCC-CCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccccc
Q psy2733           2 TLLHILAYQGCVEELNILLARGA-CVYYPDD-AGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga-~~n~~d~-~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      ++.+.+++.....-++.|++... .++.++. +|+||||+|+..|+.+||.+|.                          
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLl--------------------------   58 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLL--------------------------   58 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHH--------------------------
Confidence            56778888888888888888766 5677766 9999999999999999999852                          


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                    -+.+..+|.+|..||||||+|+..|+.++|+.|+
T Consensus        59 ----------------------------------------------sq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll   92 (226)
T KOG4412|consen   59 ----------------------------------------------SQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELL   92 (226)
T ss_pred             ----------------------------------------------hcCCCCCCCccccCCchhhhhhhcCcHHHHHHHh
Confidence                                                          2445567888999999999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD  239 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d  239 (644)
                      ...++++|..++.|.|+||||+.+|..+++++|++.|+.+..  +|..|.||||.|+.-|+.+++++|+.. |+.+|.+|
T Consensus        93 ~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~--kD~~~qtplHRAAavGklkvie~Li~~-~a~~n~qD  169 (226)
T KOG4412|consen   93 NRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRI--KDKQGQTPLHRAAAVGKLKVIEYLISQ-GAPLNTQD  169 (226)
T ss_pred             cCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcc--cccccCchhHHHHhccchhhHHHHHhc-CCCCCccc
Confidence            977999999999999999999999999999999999987766  778999999999999999999999998 79999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHH
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLF  283 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~  283 (644)
                      ..|+||||.|...|+.++..+|+++|+++...|+.| ||+-.|.
T Consensus       170 k~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  170 KYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             ccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            999999999999999999999999999999999988 9988775

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.8e-32  Score=300.68  Aligned_cols=278  Identities=18%  Similarity=0.140  Sum_probs=225.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +||||+||..|+.+++++|++.+++.+.  ..+.+||+.|+..++.+++++| ..+.+.........             
T Consensus        71 ~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~-------------  135 (477)
T PHA02878         71 LTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVY-------------  135 (477)
T ss_pred             CCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHH-------------
Confidence            6999999999999999999999876654  5688999999999999999998 54333221000000             


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNN-QDTPMHDAVAKGFEEIQLLL  158 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~-G~TpL~~A~~~g~~~iv~~L  158 (644)
                                         .         ........+...++++|+++|+++|..+.. |.||||+|+..|+.+++++|
T Consensus       136 -------------------~---------~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        136 -------------------I---------DKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             -------------------H---------hhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence                               0         000001112334688999999999999998 99999999999999999999


Q ss_pred             hcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhc-CcHHHHHHHHHhcCCCccc
Q psy2733         159 LSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFN-DHIEIVELLVEKYKVNINA  237 (644)
Q Consensus       159 l~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~~g~~in~  237 (644)
                      ++ .|++++..+..|.||||+|+..|+.++++.|++.|+++..  .|..|+||||+|+.. ++.+++++|++. |++++.
T Consensus       188 l~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~--~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-gadvn~  263 (477)
T PHA02878        188 LS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA--RDKCGNTPLHISVGYCKDYDILKLLLEH-GVDVNA  263 (477)
T ss_pred             HH-CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHhcCCHHHHHHHHHc-CCCCCc
Confidence            99 7999999999999999999999999999999999998776  668999999999975 789999999998 899999


Q ss_pred             CCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccc
Q psy2733         238 LDL-KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHG  316 (644)
Q Consensus       238 ~d~-~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (644)
                      ++. .|.||||+|  .++.+++++|+++|+|+|.+|.+|.||||+|+..+..                            
T Consensus       264 ~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~----------------------------  313 (477)
T PHA02878        264 KSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLC----------------------------  313 (477)
T ss_pred             cCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCc----------------------------
Confidence            986 799999999  5789999999999999999999999999999975431                            


Q ss_pred             hHHHHHHHHH-----HcCCCCCCCCCCCCCcchhhhcCCcHHHHHH
Q psy2733         317 ILLAVFLFLV-----KHGAPLSLENNNRQKPLDLILEDTSLLNEIM  357 (644)
Q Consensus       317 ~~~~iv~~Ll-----~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~  357 (644)
                        .+++++|+     ..+++++.++..|..+-.-+++....+..+.
T Consensus       314 --~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i~~~~~~~~~~  357 (477)
T PHA02878        314 --INIGRILISNICLLKRIKPDIKNSEGFIDNMDCITSNKRLNQIK  357 (477)
T ss_pred             --cchHHHHHHHHHHHHhccCcccCcHHHHHHHHHHhccHHHHHHH
Confidence              23444444     4467888899999887666664444443333

>KOG4177|consensus

Probab=100.00  E-value=5e-33  Score=316.61  Aligned_cols=315  Identities=25%  Similarity=0.319  Sum_probs=261.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      .||||.|+..+.+++++.++.+|+++...|..|.||||.|+..|+.+++.+| .+++.++..+..+.++++.+.......
T Consensus       210 ~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e  289 (1143)
T KOG4177|consen  210 FTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVE  289 (1143)
T ss_pred             CCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhh
Confidence            4899999999999999999999999999999999999999999999999999 999999999999999999888766544


Q ss_pred             CCCCCCC---------CCCCCcccc---------cccccccccCC---------------------------------CC
Q psy2733          80 RPSNLPK---------VEPETPMLN---------MKFIPRMNEDM---------------------------------LD  108 (644)
Q Consensus        80 ~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~---------------------------------~~  108 (644)
                      ....+..         ....+++..         ...........                                 ..
T Consensus       290 ~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~  369 (1143)
T KOG4177|consen  290 VCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQ  369 (1143)
T ss_pred             hHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCc
Confidence            3322221         111111111         11122222222                                 23


Q ss_pred             CCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHH
Q psy2733         109 TPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV  181 (644)
Q Consensus       109 ~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~  181 (644)
                      ....+.++++.++       +++++..|+++|.++..|.||||.|+..++..+++.+++ .+++++..+..|+||+|+|+
T Consensus       370 a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~-~gA~~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  370 AEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLK-RGASPNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             ccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEec-cCCChhhHhhcCCChhhhhh
Confidence            3445555555553       788888899998888899999999999999999999988 78899999999999999999


Q ss_pred             HcC-CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Q psy2733         182 LRG-NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY  260 (644)
Q Consensus       182 ~~g-~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~  260 (644)
                      ..| ..++...+++.+.+++..  ...|.||||+|+..|+.+++..|++. ++..+.....|.|+||+|...+.+.+++.
T Consensus       449 ~~g~~~~~~~~l~~~g~~~n~~--s~~G~T~Lhlaaq~Gh~~~~~llle~-~~~~~~~~~~~l~~lhla~~~~~v~~~~~  525 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADPNAV--SKQGFTPLHLAAQEGHTEVVQLLLEG-GANDNLDAKKGLTPLHLAADEDTVKVAKI  525 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCcchh--ccccCcchhhhhccCCchHHHHhhhc-CCccCccchhccchhhhhhhhhhHHHHHH
Confidence            998 788888888888777663  36899999999999999999999887 67788888889999999999999999999


Q ss_pred             HHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCC
Q psy2733         261 LMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQ  340 (644)
Q Consensus       261 Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~  340 (644)
                      ++++|++++.++..|.||||+|+..|+                               +.+|++|+++|||++.+++.|+
T Consensus       526 l~~~ga~v~~~~~r~~TpLh~A~~~g~-------------------------------v~~VkfLLe~gAdv~ak~~~G~  574 (1143)
T KOG4177|consen  526 LLEHGANVDLRTGRGYTPLHVAVHYGN-------------------------------VDLVKFLLEHGADVNAKDKLGY  574 (1143)
T ss_pred             HhhcCCceehhcccccchHHHHHhcCC-------------------------------chHHHHhhhCCccccccCCCCC
Confidence            999999999999999999999999998                               6699999999999999999999


Q ss_pred             CcchhhhcCC
Q psy2733         341 KPLDLILEDT  350 (644)
Q Consensus       341 TpL~~A~~~~  350 (644)
                      ||||.|+..+
T Consensus       575 TPLH~Aa~~G  584 (1143)
T KOG4177|consen  575 TPLHQAAQQG  584 (1143)
T ss_pred             ChhhHHHHcC
Confidence            9999999655

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.98  E-value=3.7e-31  Score=287.81  Aligned_cols=201  Identities=25%  Similarity=0.309  Sum_probs=183.5

Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcC
Q psy2733         125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPK  204 (644)
Q Consensus       125 Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  204 (644)
                      |++.|+++|..+.+|.||||+|+..|+.+++++|++ .|++++..+..+.||||+|+..|+.++++.|++.++...... 
T Consensus        21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-   98 (413)
T PHA02875         21 LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVF-   98 (413)
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccc-
Confidence            788899999999999999999999999999999999 799999999999999999999999999999999987664432 


Q ss_pred             CCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHH
Q psy2733         205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI  284 (644)
Q Consensus       205 d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~  284 (644)
                      +..|+||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~  177 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA  177 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            36799999999999999999999998 89999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCC-CcchhhhcCC--cHHHHHHHH
Q psy2733         285 KKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQ-KPLDLILEDT--SLLNEIMEH  359 (644)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~-TpL~~A~~~~--~~~~~l~~~  359 (644)
                      .++                               .+++++|+++|++++..+..|. ||+++|+..+  ++++.|+..
T Consensus       178 ~g~-------------------------------~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~  224 (413)
T PHA02875        178 KGD-------------------------------IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR  224 (413)
T ss_pred             cCC-------------------------------HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence            998                               7799999999999999998875 8899899544  345555443

>KOG0508|consensus

Probab=99.98  E-value=1e-31  Score=272.27  Aligned_cols=176  Identities=22%  Similarity=0.262  Sum_probs=149.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHH-CCCCCccc--------CCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhh
Q psy2733           1 KTLLHILAYQGCVEELNILLA-RGACVYYP--------DDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERH   70 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~-~Ga~~n~~--------d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~   70 (644)
                      .|||-+||++|+.++|++|++ .++++...        ..+|-+||..|+..||.++|++| .+++++|.          
T Consensus        43 ~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~----------  112 (615)
T KOG0508|consen   43 GTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND----------  112 (615)
T ss_pred             CCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc----------
Confidence            489999999999999999999 46665443        45688999999999999999999 99999987          


Q ss_pred             hccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHH
Q psy2733          71 RTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPM  143 (644)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL  143 (644)
                                                            ......|||--|+       ++.|+++|+|+++.|..|.|.|
T Consensus       113 --------------------------------------tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcL  154 (615)
T KOG0508|consen  113 --------------------------------------TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCL  154 (615)
T ss_pred             --------------------------------------ccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeE
Confidence                                                  5555556666553       8888888999988888889999


Q ss_pred             HHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHH
Q psy2733         144 HDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEI  223 (644)
Q Consensus       144 ~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~  223 (644)
                      |+|+.+|+.+|+++|++ .|+++|.++..|.|+||.|++.|+.+++++|+.+++.+..   |..|.|||..|+..|+.++
T Consensus       155 mIa~ykGh~~I~qyLle-~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~---d~~GmtPL~~Aa~tG~~~i  230 (615)
T KOG0508|consen  155 MIACYKGHVDIAQYLLE-QGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV---DGHGMTPLLLAAVTGHTDI  230 (615)
T ss_pred             EeeeccCchHHHHHHHH-hCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee---cCCCCchHHHHhhhcchHH
Confidence            99998899999999888 7888888888889999999989999999988888877654   4668899988888888888


Q ss_pred             HHHHH
Q psy2733         224 VELLV  228 (644)
Q Consensus       224 v~~Ll  228 (644)
                      |+.|+
T Consensus       231 Ve~L~  235 (615)
T KOG0508|consen  231 VERLL  235 (615)
T ss_pred             HHHHh
Confidence            88887

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=289.67  Aligned_cols=252  Identities=15%  Similarity=0.157  Sum_probs=220.6

Q ss_pred             cHHHHH--HHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhc-----CCHHHHHHH-hhccCCCccchhhhhhhhhcc
Q psy2733           2 TLLHIL--AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFG-----NKPDAIQIN-SHVSGANRSRKHIYKERHRTV   73 (644)
Q Consensus         2 TpLh~A--a~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~-----g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~   73 (644)
                      |+++.+  ...++.++|++|+++|+++|.+|..|.||||+|+.+     ++.+++++| .+|++++.             
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~-------------  104 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINK-------------  104 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC-------------
Confidence            555533  334689999999999999999999999999999864     678999999 99999988             


Q ss_pred             ccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH----------HHHHHhCCCCCCCCCCCCCcHH
Q psy2733          74 TTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ----------DFVLLRNGCNVNIQDNNQDTPM  143 (644)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~----------v~~Ll~~gad~n~~d~~G~TpL  143 (644)
                                                         .+..|.||||+++          +++|+++|++++..|..|.|||
T Consensus       105 -----------------------------------~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL  149 (489)
T PHA02798        105 -----------------------------------KNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTML  149 (489)
T ss_pred             -----------------------------------CCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHH
Confidence                                               7788889988774          7899999999999999999999


Q ss_pred             HHHHHcCC---HHHHHHHhcCCCCCccccC-CCCCcHHHHHHHc----CCHHHHHHHHHhcCCccCCcCCCCCchHHH--
Q psy2733         144 HDAVAKGF---EEIQLLLLSHPEVNLYLEN-SKGFNILNYAVLR----GNMKVTEKILALNRNLATVPKTSDGFTPLH--  213 (644)
Q Consensus       144 ~~A~~~g~---~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh--  213 (644)
                      |+|++.|+   .+++++|++ .|++++..+ ..|.||||.++..    ++.+++++|++.|+++..  .+..|.++++  
T Consensus       150 ~~a~~~~~~~~~~vv~~Ll~-~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~--~~~~~~~~~~~~  226 (489)
T PHA02798        150 QVYLQSNHHIDIEIIKLLLE-KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK--ENKSHKKKFMEY  226 (489)
T ss_pred             HHHHHcCCcchHHHHHHHHH-hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc--CCccccchHHHH
Confidence            99999998   999999999 799999885 5789999998765    489999999999988765  4456778776  


Q ss_pred             -----HHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCc
Q psy2733         214 -----VACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNF  288 (644)
Q Consensus       214 -----~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~  288 (644)
                           ++...++.+++.+|+.  ++++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++ 
T Consensus       227 l~~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~-  303 (489)
T PHA02798        227 LNSLLYDNKRFKKNILDFIFS--YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES-  303 (489)
T ss_pred             HHHHHhhcccchHHHHHHHHh--cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc-
Confidence                 2445677888888876  58999999999999999999999999999999999999999999999999999988 


Q ss_pred             ccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCC
Q psy2733         289 YKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENN  337 (644)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~  337 (644)
                                                    .++++.|+++|++++....
T Consensus       304 ------------------------------~~iv~~lL~~~~~~~~i~~  322 (489)
T PHA02798        304 ------------------------------KFIFNSILNKKPNKNTISY  322 (489)
T ss_pred             ------------------------------HHHHHHHHccCCCHHHHHH
Confidence                                          6699999999998875443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=281.51  Aligned_cols=297  Identities=12%  Similarity=0.091  Sum_probs=231.2

Q ss_pred             HHHH-HHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHh-cCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           3 LLHI-LAYQGCVEELNILLARGACVYYPDDAGDTALHYAAF-GNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         3 pLh~-Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~-~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      ++|+ |...|++|+|++|+++||++|.++..|.||||+|+. .++.|++++| .+|+++......+++++...+......
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~  153 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYY  153 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccccccc
Confidence            4544 556799999999999999999999999999999976 6999999999 999998877777777666555432211


Q ss_pred             -CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH--------------HHHHHhCCCCCCCCCCCCCcHHH
Q psy2733          80 -RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ--------------DFVLLRNGCNVNIQDNNQDTPMH  144 (644)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~--------------v~~Ll~~gad~n~~d~~G~TpL~  144 (644)
                       ........+             .+.-....+..|.||||+++              +++|+.+|++++..|..|.||||
T Consensus       154 ~~~~~~~~~~-------------~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~  220 (631)
T PHA02792        154 NWDDELDDYD-------------YDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLY  220 (631)
T ss_pred             chhhhccccc-------------cccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHH
Confidence             111111000             01112236778999999885              78999999999999999999999


Q ss_pred             HHHHcC--CHHHHHHHhcCCC---------------------CCcc--ccC--CCCCcH---------------------
Q psy2733         145 DAVAKG--FEEIQLLLLSHPE---------------------VNLY--LEN--SKGFNI---------------------  176 (644)
Q Consensus       145 ~A~~~g--~~~iv~~Ll~~~~---------------------~~~~--~~d--~~g~tp---------------------  176 (644)
                      +|+.+.  ..+++++|++...                     .+++  +.+  -.|.+|                     
T Consensus       221 ~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~  300 (631)
T PHA02792        221 YYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILK  300 (631)
T ss_pred             HHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHH
Confidence            999999  8999999988311                     0010  000  011111                     


Q ss_pred             ---------HHHHHHcC--CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCC--C
Q psy2733         177 ---------LNYAVLRG--NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK--R  243 (644)
Q Consensus       177 ---------L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G--~  243 (644)
                               ||.=...+  +.+++++|++.|+....    .....+++.|+..|+.+++++|+++ |++++.+|..|  .
T Consensus       301 ~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r----~~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~  375 (631)
T PHA02792        301 RYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR----FKHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINI  375 (631)
T ss_pred             HHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc----CCcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCCh
Confidence                     22223333  57789999999987642    3356779999999999999999998 89999999875  6


Q ss_pred             CHHHHHHHcCCH---HHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHH
Q psy2733         244 TPLMAAVGQGQT---SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLA  320 (644)
Q Consensus       244 TpL~~Aa~~g~~---~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (644)
                      ||||+|+.....   +++++|+++|+|+|.+|..|+||||+|+..++                               .+
T Consensus       376 TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n-------------------------------~e  424 (631)
T PHA02792        376 MPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHS-------------------------------VS  424 (631)
T ss_pred             hHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCC-------------------------------HH
Confidence            999998877664   46889999999999999999999999999888                               67


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCcchhhhc
Q psy2733         321 VFLFLVKHGAPLSLENNNRQKPLDLILE  348 (644)
Q Consensus       321 iv~~Ll~~Gadi~~~n~~G~TpL~~A~~  348 (644)
                      ++++|+++||+++.+|..|+|||++|..
T Consensus       425 ivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        425 LVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999973

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.8e-29  Score=285.22  Aligned_cols=316  Identities=14%  Similarity=0.115  Sum_probs=200.1

Q ss_pred             HHHHHHHHHCCCCCcccCCCCCcHHHHHHhc---CCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCC
Q psy2733          13 VEELNILLARGACVYYPDDAGDTALHYAAFG---NKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVE   88 (644)
Q Consensus        13 ~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~---g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (644)
                      ++.|+.|+..|+.++.+|.+|+||||+|+..   |+.++|++| ..|++++..+..+.++++.+...........     
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~-----   86 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKD-----   86 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHH-----
Confidence            5788999999999999999999999998655   889999999 9999999877777788777766543211000     


Q ss_pred             CCCcccccccccccccCCCCCCcccchhhHHH-------HHHHHHhCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHh
Q psy2733          89 PETPMLNMKFIPRMNEDMLDTPSAECSGILIK-------QDFVLLRNGCNVNIQDNNQDTPMHDAV--AKGFEEIQLLLL  159 (644)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a-------~v~~Ll~~gad~n~~d~~G~TpL~~A~--~~g~~~iv~~Ll  159 (644)
                            ....+..........+  ...+++.|       ++++|+++|+++|.+|.+|+||||+|+  ..|+.+++++|+
T Consensus        87 ------~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi  158 (661)
T PHA02917         87 ------IAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFI  158 (661)
T ss_pred             ------HHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHH
Confidence                  0001111000000011  11334434       277888888888888888888887543  456888888888


Q ss_pred             cCCCCCccccCC---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHhcCCccCCcCCCCCchHHHH
Q psy2733         160 SHPEVNLYLENS---KG-----------FNILNYAVL-----------RGNMKVTEKILALNRNLATVPKTSDGFTPLHV  214 (644)
Q Consensus       160 ~~~~~~~~~~d~---~g-----------~tpL~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~  214 (644)
                      + .|++++..|.   .|           .||||+|+.           .++.+++++|++.|++++.  .|..|+||||+
T Consensus       159 ~-~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~--~d~~G~TpLh~  235 (661)
T PHA02917        159 E-NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS--IDKNYCTALQY  235 (661)
T ss_pred             H-cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc--CCCCCCcHHHH
Confidence            8 6888776543   23           488888875           4577888888888877665  55778888888


Q ss_pred             HHhcCcH--HHHHHHHHhcCCCcc----cCCCCCCCHHHHHHHc-------C--CHHHHHHHHHCCCCCC-------ccc
Q psy2733         215 ACFNDHI--EIVELLVEKYKVNIN----ALDLKKRTPLMAAVGQ-------G--QTSVINYLMLRDVALD-------IQD  272 (644)
Q Consensus       215 A~~~g~~--~~v~~Ll~~~g~~in----~~d~~G~TpL~~Aa~~-------g--~~~iv~~Ll~~gadvn-------~~d  272 (644)
                      |+..|+.  ++|++|++  |++++    ..|..|.||+|+|+..       +  +.+++++|++.|++..       ..+
T Consensus       236 A~~~g~~~~eivk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~  313 (661)
T PHA02917        236 YIKSSHIDIDIVKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWR  313 (661)
T ss_pred             HHHcCCCcHHHHHHHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccc
Confidence            8888774  68888764  56554    3556677778887731       1  5678888888887642       111


Q ss_pred             C------------CCCcHHHHHHH---cCCcc--cccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHH-cCCCCCC
Q psy2733         273 I------------DGNGLLHFLFI---KKNFY--KTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK-HGAPLSL  334 (644)
Q Consensus       273 ~------------~G~T~Lh~A~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~-~Gadi~~  334 (644)
                      .            .+.++||++..   .+...  +++.+.+.++.+.....  .+.........+++++|+. +|++++.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~--~g~~~~~~~~~~~i~~LL~~~ga~~~~  391 (661)
T PHA02917        314 NDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAI--HGYFRNINIDSYTMKYLLKKEGGDAVN  391 (661)
T ss_pred             cchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCc--cccchhhcCCHHHHHHHHHhcCCCccc
Confidence            2            23344443332   33322  33444444433322100  0001111223456777775 6888877


Q ss_pred             CCCCCCCcchhhhc
Q psy2733         335 ENNNRQKPLDLILE  348 (644)
Q Consensus       335 ~n~~G~TpL~~A~~  348 (644)
                      ++.+|+||||.|++
T Consensus       392 ~~~~G~TpL~~a~~  405 (661)
T PHA02917        392 HLDDGEIPIGHLCK  405 (661)
T ss_pred             cCCCCCChhHHHHH
Confidence            88889999998864

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=278.81  Aligned_cols=299  Identities=12%  Similarity=0.055  Sum_probs=229.5

Q ss_pred             CcHHHHHHHcC--CHHHHHHHHHCCCC--CcccCCCCCcHHHHHHh--cCCHHHHHHH-h-hccCCCccch-----hhhh
Q psy2733           1 KTLLHILAYQG--CVEELNILLARGAC--VYYPDDAGDTALHYAAF--GNKPDAIQIN-S-HVSGANRSRK-----HIYK   67 (644)
Q Consensus         1 ~TpLh~Aa~~G--~~e~vk~LL~~Ga~--~n~~d~~G~TpLh~Aa~--~g~~eiv~lL-~-~~a~~~~~~~-----~~~~   67 (644)
                      +||||+|+..|  +.++|++|++.|++  ++..|..+++||+.++.  +++.++|++| . .+.+++....     .+..
T Consensus        78 ~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~  157 (672)
T PHA02730         78 LTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLV  157 (672)
T ss_pred             CChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchh
Confidence            69999999977  79999999999664  47778779999999888  8889999999 4 5556554322     2223


Q ss_pred             hhhhccccccc-------cCCCCC---------CC----------------CCCCCcccccccccccccCCCCCCcccch
Q psy2733          68 ERHRTVTTEKV-------QRPSNL---------PK----------------VEPETPMLNMKFIPRMNEDMLDTPSAECS  115 (644)
Q Consensus        68 ~~~~~~~~~~~-------~~~~~~---------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  115 (644)
                      ++..+......       ......         ..                .........++++...+.++..++..|.|
T Consensus       158 ~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~T  237 (672)
T PHA02730        158 DIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSL  237 (672)
T ss_pred             hhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            33222211110       000000         00                01111223356788899999999999999


Q ss_pred             hhHHH---------HHHHHHh--------------------------------CCCCCCC--------------------
Q psy2733         116 GILIK---------QDFVLLR--------------------------------NGCNVNI--------------------  134 (644)
Q Consensus       116 ~L~~a---------~v~~Ll~--------------------------------~gad~n~--------------------  134 (644)
                      |||++         ++++|++                                +|+|+..                    
T Consensus       238 pLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  317 (672)
T PHA02730        238 PIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITS  317 (672)
T ss_pred             HHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhcccc
Confidence            99953         2899999                                7998866                    


Q ss_pred             CCCCCCc---------------------HHHHHHHcC---CHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCC----H
Q psy2733         135 QDNNQDT---------------------PMHDAVAKG---FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN----M  186 (644)
Q Consensus       135 ~d~~G~T---------------------pL~~A~~~g---~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~----~  186 (644)
                      .+..|.+                     .||.-...+   +.+++++|++ .|++++.. ..|.||||+|+..++    .
T Consensus       318 ~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs-~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~  395 (672)
T PHA02730        318 YDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD-NGATMDKT-TDNNYPLHDYFVNNNNIVDV  395 (672)
T ss_pred             ccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH-CCCCCCcC-CCCCcHHHHHHHHcCCcchH
Confidence            5667765                     677777755   6999999999 79999985 799999999998875    8


Q ss_pred             HHHHHHHHhcCCccCCcCCCCCchHHHH---HHhcC---------cHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC
Q psy2733         187 KVTEKILALNRNLATVPKTSDGFTPLHV---ACFND---------HIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ  254 (644)
Q Consensus       187 ~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~---A~~~g---------~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~  254 (644)
                      ++++.|+++|++.+....|..|.||||.   |...+         ..+++++|+++ |+++|.+|..|.||||+|+..++
T Consensus       396 eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GADINakD~~G~TPLh~Aa~~~~  474 (672)
T PHA02730        396 NVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY-MDDIDMIDNENKTLLYYAVDVNN  474 (672)
T ss_pred             HHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc-ccchhccCCCCCCHHHHHHHhCC
Confidence            9999999999864444466889999984   33332         23579999998 89999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccC-CCCcHHHHHHHc--CCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCC
Q psy2733         255 TSVINYLMLRDVALDIQDI-DGNGLLHFLFIK--KNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAP  331 (644)
Q Consensus       255 ~~iv~~Ll~~gadvn~~d~-~G~T~Lh~A~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gad  331 (644)
                      .+++++|+++|+++|.+|. .|.||||+|+..  ++                               .+++++|+++|++
T Consensus       475 ~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~-------------------------------~eIv~~LLs~ga~  523 (672)
T PHA02730        475 IQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENK-------------------------------TKLVDLLLSYHPT  523 (672)
T ss_pred             HHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCc-------------------------------HHHHHHHHHcCCC
Confidence            9999999999999999997 599999999874  34                               6799999999998


Q ss_pred             CC
Q psy2733         332 LS  333 (644)
Q Consensus       332 i~  333 (644)
                      ++
T Consensus       524 i~  525 (672)
T PHA02730        524 LE  525 (672)
T ss_pred             HH
Confidence            75

>KOG0509|consensus

Probab=99.97  E-value=3.8e-30  Score=272.20  Aligned_cols=206  Identities=25%  Similarity=0.333  Sum_probs=191.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           3 LLHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         3 pLh~Aa~~G~~e~vk~LL~~-Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      .++.|+.+|.++.|+.|++. |.+++..|.+|.|+||+|+.+++.+++++                              
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~------------------------------   96 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARY------------------------------   96 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHH------------------------------
Confidence            46789999999999999999 99999999999999999999999999998                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQD-NNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d-~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                 |+++|+++|..+ .-|.||||+|+++|+..++.+|++
T Consensus        97 -------------------------------------------li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq  133 (600)
T KOG0509|consen   97 -------------------------------------------LISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ  133 (600)
T ss_pred             -------------------------------------------HHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH
Confidence                                                       777777777776 568899999999999999999999


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC-
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD-  239 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d-  239 (644)
                       .|++++.+|.+|.+|||.|+..|+.-+|-+|+.++++++.  +|.+|+||||+|+.+|+...++.|++- ++.++..| 
T Consensus       134 -hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~--~D~~grTpLmwAaykg~~~~v~~LL~f-~a~~~~~d~  209 (600)
T KOG0509|consen  134 -HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL--RDNNGRTPLMWAAYKGFALFVRRLLKF-GASLLLTDD  209 (600)
T ss_pred             -cCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC--cCCCCCCHHHHHHHhcccHHHHHHHHh-ccccccccc
Confidence             8999999999999999999999999999999999977766  779999999999999998888999887 78888888 


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHc
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIK  285 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~  285 (644)
                      ..|.||||+|+..|+..++.+|++.|++.+.+|.+|.||+.+|..+
T Consensus       210 ~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  210 NHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999999999999999977788899999999999999999776

>KOG0509|consensus

Probab=99.96  E-value=1.2e-29  Score=268.57  Aligned_cols=193  Identities=28%  Similarity=0.363  Sum_probs=180.5

Q ss_pred             HHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCc
Q psy2733         122 DFVLLRN-GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN-SKGFNILNYAVLRGNMKVTEKILALNRNL  199 (644)
Q Consensus       122 v~~Ll~~-gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  199 (644)
                      ++.|++. |.+++..|.+|.|+||+|+.+++.+++++|++ .|+++|... .-+.||||+|+++|+..+|..|+++|+++
T Consensus        60 v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp  138 (600)
T KOG0509|consen   60 VKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLIS-HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP  138 (600)
T ss_pred             HHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHH-cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC
Confidence            4457777 88999999999999999999999999999999 799999988 77899999999999999999999999998


Q ss_pred             cCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc-CCCCcH
Q psy2733         200 ATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQD-IDGNGL  278 (644)
Q Consensus       200 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d-~~G~T~  278 (644)
                      ..  .|..|.||||.|++.|+.-.|-+||.+ ++++|.+|.+|+||||+|+.+|+...++.|++.|+.++.+| ..|+||
T Consensus       139 t~--~D~~G~~~lHla~~~~~~~~vayll~~-~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~Tp  215 (600)
T KOG0509|consen  139 TL--KDKQGLTPLHLAAQFGHTALVAYLLSK-GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTP  215 (600)
T ss_pred             ce--ecCCCCcHHHHHHHhCchHHHHHHHHh-cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCch
Confidence            87  778999999999999999999999999 69999999999999999999999988999999999999998 899999


Q ss_pred             HHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcC
Q psy2733         279 LHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED  349 (644)
Q Consensus       279 Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~  349 (644)
                      ||+|+..|+                               +.++.+|++.|++.+.+|.+|+||+++|.+.
T Consensus       216 LHwa~~~gN-------------------------------~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  216 LHWAVVGGN-------------------------------LTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHhcCC-------------------------------cceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            999999999                               4477788888899999999999999999844

>KOG0508|consensus

Probab=99.96  E-value=3.8e-28  Score=246.42  Aligned_cols=213  Identities=23%  Similarity=0.289  Sum_probs=177.5

Q ss_pred             HHHHcCCHHHHHHHHHCCCC-----CcccCCCCCcHHHHHHhcCCHHHHHHH-h-hccCCCccchhhhhhhhhccccccc
Q psy2733           6 ILAYQGCVEELNILLARGAC-----VYYPDDAGDTALHYAAFGNKPDAIQIN-S-HVSGANRSRKHIYKERHRTVTTEKV   78 (644)
Q Consensus         6 ~Aa~~G~~e~vk~LL~~Ga~-----~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~-~~a~~~~~~~~~~~~~~~~~~~~~~   78 (644)
                      -|++.|++..+..|+-...+     +-..+.+|.|||-+|+++||.++|++| . .++++.......             
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~-------------   76 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVR-------------   76 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEE-------------
Confidence            57888999888888866432     223456788999999999999999999 3 455543311000             


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHH-------HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2733          79 QRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK-------QDFVLLRNGCNVNIQDNNQDTPMHDAVAKGF  151 (644)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a-------~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~  151 (644)
                              +                   .-....|..||..|       +|++|+++|+++|.......|||.-||.-|+
T Consensus        77 --------F-------------------Dge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~  129 (615)
T KOG0508|consen   77 --------F-------------------DGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGH  129 (615)
T ss_pred             --------e-------------------CCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcch
Confidence                    0                   00233455565544       5999999999999999888999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhc
Q psy2733         152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKY  231 (644)
Q Consensus       152 ~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~  231 (644)
                      .+++++|++ .|+++++.|..|.|.||+|+.+|+.+++++|++.|++++.  ++..|+|+||.++..|+.+++++|++. 
T Consensus       130 leivKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~--ks~kGNTALH~caEsG~vdivq~Ll~~-  205 (615)
T KOG0508|consen  130 LEIVKYLVE-HGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA--KSYKGNTALHDCAESGSVDIVQLLLKH-  205 (615)
T ss_pred             hHHHHHHHH-cCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcch--hcccCchHHHhhhhcccHHHHHHHHhC-
Confidence            999999998 8999999999999999999999999999999999999877  667899999999999999999999998 


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2733         232 KVNINALDLKKRTPLMAAVGQGQTSVINYLML  263 (644)
Q Consensus       232 g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~  263 (644)
                      |+.+. +|..|+|||..|+..|+.++|++|++
T Consensus       206 ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  206 GAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             Cceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            67766 56679999999999999999999983

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.1e-27  Score=248.34  Aligned_cols=224  Identities=14%  Similarity=0.056  Sum_probs=187.0

Q ss_pred             HHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcc
Q psy2733          15 ELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPM   93 (644)
Q Consensus        15 ~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (644)
                      ..++++.+|+++|.++.+|     +|+..+..|++++| +++++++.-.                               
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~-------------------------------  107 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFS-------------------------------  107 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhh-------------------------------
Confidence            3578888999999888887     89999999999886 5555554200                               


Q ss_pred             cccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHhcCCCCCccccCC
Q psy2733          94 LNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVA--KGFEEIQLLLLSHPEVNLYLENS  171 (644)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~--~g~~~iv~~Ll~~~~~~~~~~d~  171 (644)
                                                    ..+       .++..++|+||.|+.  .|+.+++++|++ .|++++..  
T Consensus       108 ------------------------------~~~-------~~~~~~~~~L~~~~~n~~n~~eiV~~LI~-~GADIn~~--  147 (437)
T PHA02795        108 ------------------------------III-------KNCNSVQDLLLYYLSNAYVEIDIVDFMVD-HGAVIYKI--  147 (437)
T ss_pred             ------------------------------hhh-------hccccccHHHHHHHHhcCCCHHHHHHHHH-CCCCCCCC--
Confidence                                          000       456679999999999  889999999999 79999874  


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcC----CCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHH
Q psy2733         172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPK----TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM  247 (644)
Q Consensus       172 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~----d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~  247 (644)
                      ++.||||.|+..|+.+++++|+++|+.......    +..+.|++|.|+..++.+++++|+++ |+++|.+|..|.||||
T Consensus       148 ~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh  226 (437)
T PHA02795        148 ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY-IEDINQLDAGGRTLLY  226 (437)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHH
Confidence            458999999999999999999999985433211    13478999999999999999999998 8999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHH
Q psy2733         248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK  327 (644)
Q Consensus       248 ~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~  327 (644)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+..                       .....+.+++++|++
T Consensus       227 ~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~-----------------------~~~~~~~eIvelLL~  283 (437)
T PHA02795        227 RAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVI-----------------------ARRETHLKILEILLR  283 (437)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcc-----------------------cccccHHHHHHHHHh
Confidence            999999999999999999999999999999999999988621                       112234789999999


Q ss_pred             cCCCCCCCCCC
Q psy2733         328 HGAPLSLENNN  338 (644)
Q Consensus       328 ~Gadi~~~n~~  338 (644)
                      +|++++.....
T Consensus       284 ~gadI~~~~~~  294 (437)
T PHA02795        284 EPLSIDCIKLA  294 (437)
T ss_pred             CCCCCCchhHH
Confidence            99999875543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=6.7e-27  Score=229.37  Aligned_cols=175  Identities=17%  Similarity=0.142  Sum_probs=155.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCccCCcCCCCCchHHH
Q psy2733         136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG--NMKVTEKILALNRNLATVPKTSDGFTPLH  213 (644)
Q Consensus       136 d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh  213 (644)
                      .+.+.||||+|+..|+.++++.|++.    ++..+..|.||||+|+..+  +.+++++|++.|+++.... +..|+||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~-~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT-RDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC-CCCCCCHHH
Confidence            35678999999999999999999972    5677899999999999854  8999999999999887632 257999999


Q ss_pred             HHHhc---CcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCcccCCCCcHHHHH-HHcCC
Q psy2733         214 VACFN---DHIEIVELLVEKYKVNINALDLKKRTPLMAAVG--QGQTSVINYLMLRDVALDIQDIDGNGLLHFL-FIKKN  287 (644)
Q Consensus       214 ~A~~~---g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~--~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A-~~~~~  287 (644)
                      +|+..   ++.+++++|+++ |+++|.+|..|.||||+|+.  .++.+++++|+++|++++.+|.+|+||||.+ +..++
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHHHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC
Confidence            98764   479999999998 89999999999999999986  4689999999999999999999999999965 44555


Q ss_pred             cccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhh
Q psy2733         288 FYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~  347 (644)
                                                     .+++++|+++|++++.+|..|+|||++|.
T Consensus       172 -------------------------------~~iv~~Ll~~Gadi~~~d~~g~tpl~la~  200 (209)
T PHA02859        172 -------------------------------KKIFDFLTSLGIDINETNKSGYNCYDLIK  200 (209)
T ss_pred             -------------------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence                                           67999999999999999999999999998

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.4e-26  Score=222.97  Aligned_cols=149  Identities=13%  Similarity=0.253  Sum_probs=107.9

Q ss_pred             CCCCCCcHHHHHHHcC--CHHHHHHHhcCCCCCccccC-CCCCcHHHHHHHc---CCHHHHHHHHHhcCCccCCcCCCCC
Q psy2733         135 QDNNQDTPMHDAVAKG--FEEIQLLLLSHPEVNLYLEN-SKGFNILNYAVLR---GNMKVTEKILALNRNLATVPKTSDG  208 (644)
Q Consensus       135 ~d~~G~TpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g  208 (644)
                      .|..|.||||+|+..+  +.+++++|++ .|++++.++ ..|.||||+|+..   ++.+++++|++.|++++.  .|..|
T Consensus        47 ~~~~g~TpLh~a~~~~~~~~eiv~~Ll~-~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~--~d~~G  123 (209)
T PHA02859         47 CNDLYETPIFSCLEKDKVNVEILKFLIE-NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITE--EDEDG  123 (209)
T ss_pred             cCccCCCHHHHHHHcCCCCHHHHHHHHH-CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCC--cCCCC
Confidence            4455666666666533  5666666666 566666654 3566666665542   356666666666665544  44667


Q ss_pred             chHHHHHHh--cCcHHHHHHHHHhcCCCcccCCCCCCCHHHH-HHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHc
Q psy2733         209 FTPLHVACF--NDHIEIVELLVEKYKVNINALDLKKRTPLMA-AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIK  285 (644)
Q Consensus       209 ~T~Lh~A~~--~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~-Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~  285 (644)
                      .||||+|+.  .++.+++++|++. |++++.+|..|.||||. |+..++.+++++|+++|++++.+|..|.||||+|..+
T Consensus       124 ~TpLh~a~~~~~~~~~iv~~Li~~-gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        124 KNLLHMYMCNFNVRINVIKLLIDS-GVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHc-CCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            777777654  3578899999987 79999999999999995 5667889999999999999999999999999999877


Q ss_pred             CC
Q psy2733         286 KN  287 (644)
Q Consensus       286 ~~  287 (644)
                      +-
T Consensus       203 ~~  204 (209)
T PHA02859        203 NL  204 (209)
T ss_pred             hh
Confidence            64

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=9e-25  Score=238.56  Aligned_cols=292  Identities=12%  Similarity=0.071  Sum_probs=201.5

Q ss_pred             cHHHHHHHcCCH-HHHHHHHHCCCCCcccCCCCCcHHHH-HHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccc
Q psy2733           2 TLLHILAYQGCV-EELNILLARGACVYYPDDAGDTALHY-AAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKV   78 (644)
Q Consensus         2 TpLh~Aa~~G~~-e~vk~LL~~Ga~~n~~d~~G~TpLh~-Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~   78 (644)
                      ||||.-.-..+. .-++.++..|.+++..+.+|.+++|+ |..+|+.|+|++| .+|++++.                  
T Consensus        39 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~------------------  100 (631)
T PHA02792         39 TPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINS------------------  100 (631)
T ss_pred             ccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCccc------------------
Confidence            555544333332 22345555555666666666666664 3445666777777 66766665                  


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH--------HHHHHhCCCCC------------------
Q psy2733          79 QRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ--------DFVLLRNGCNV------------------  132 (644)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~--------v~~Ll~~gad~------------------  132 (644)
                                                    .+..+.+++++|.        +++|+++||++                  
T Consensus       101 ------------------------------~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~  150 (631)
T PHA02792        101 ------------------------------IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRA  150 (631)
T ss_pred             ------------------------------ccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccc
Confidence                                          6666778877762        88999999873                  


Q ss_pred             ------------------CCCCCCCCcHHHHHHHcC-------CHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcC--C
Q psy2733         133 ------------------NIQDNNQDTPMHDAVAKG-------FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG--N  185 (644)
Q Consensus       133 ------------------n~~d~~G~TpL~~A~~~g-------~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g--~  185 (644)
                                        |..|..|.||||+|+.++       +.++++.|++ .|++++..|..|.||||+|+.+.  .
T Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~-~g~~~~~~d~~g~t~l~~~~~~~~i~  229 (631)
T PHA02792        151 EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLIS-HEKEMRYYTYREHTTLYYYVDKCDIK  229 (631)
T ss_pred             cccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHh-CCCCcCccCCCCChHHHHHHHcccch
Confidence                              244566889999999988       7899999999 78999989999999999999988  7


Q ss_pred             HHHHHHHHHhcCCccCCc------------------CC-------CCCc------------------------------h
Q psy2733         186 MKVTEKILALNRNLATVP------------------KT-------SDGF------------------------------T  210 (644)
Q Consensus       186 ~~~v~~Ll~~~~~~~~~~------------------~d-------~~g~------------------------------T  210 (644)
                      .+++++|+... ......                  -|       -.|.                              -
T Consensus       230 ~ei~~~L~~~~-~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~  308 (631)
T PHA02792        230 REIFDALFDSN-YSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQD  308 (631)
T ss_pred             HHHHHHHHhcc-ccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHH
Confidence            88999888731 100000                  00       0011                              1


Q ss_pred             HHHHHHhcC--cHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCC--CcHHHHHHHcC
Q psy2733         211 PLHVACFND--HIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDG--NGLLHFLFIKK  286 (644)
Q Consensus       211 ~Lh~A~~~g--~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G--~T~Lh~A~~~~  286 (644)
                      .||.....+  +.+++++|+++ |+++.  ...+..+++.|+..|+.+++++|+++||+++.+|.+|  .||||+|....
T Consensus       309 ~l~~Yl~~~~v~ieiIK~LId~-Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~  385 (631)
T PHA02792        309 LLSEYVSYHTVYINVIKCMIDE-GATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIH  385 (631)
T ss_pred             HHHHHHhcCCccHHHHHHHHHC-CCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhc
Confidence            234444444  56888888888 67764  2235678999999999999999999999999999875  69999877654


Q ss_pred             CcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCc--HHHHHHHHhhhhc
Q psy2733         287 NFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTS--LLNEIMEHAREYV  364 (644)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~--~~~~l~~~~~~~~  364 (644)
                      ...                            ..+++++|+++|||+|.+|..|+||||+|+..++  +.+.|+..    .
T Consensus       386 ~~~----------------------------v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~----G  433 (631)
T PHA02792        386 ESD----------------------------VLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDN----G  433 (631)
T ss_pred             cHh----------------------------HHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHC----C
Confidence            411                            2457899999999999999999999999995433  34444433    3


Q ss_pred             cccCccccchhhhh
Q psy2733         365 TDLTNENNKVVTAI  378 (644)
Q Consensus       365 ~~~~~~~~~~~~~~  378 (644)
                      .+....+..+.+.+
T Consensus       434 ADIN~kD~~G~TpL  447 (631)
T PHA02792        434 ADINITTKYGSTCI  447 (631)
T ss_pred             CCCCCcCCCCCCHH
Confidence            34444444444433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=5.5e-25  Score=232.26  Aligned_cols=187  Identities=11%  Similarity=0.060  Sum_probs=170.0

Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCcc------ccCCCCCcHHHHHHH--cCCHHHHHHHH
Q psy2733         122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLY------LENSKGFNILNYAVL--RGNMKVTEKIL  193 (644)
Q Consensus       122 v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~------~~d~~g~tpL~~A~~--~g~~~~v~~Ll  193 (644)
                      -++++.+|+++|..+.+|     +|+..+..+++++|+. .|++++      .++..++|+||.++.  .|+.++|++|+
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s-~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVS-KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHh-cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            467899999999888777     8999999999999999 799988      778889999999999  89999999999


Q ss_pred             HhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCc-ccC-----CCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q psy2733         194 ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI-NAL-----DLKKRTPLMAAVGQGQTSVINYLMLRDVA  267 (644)
Q Consensus       194 ~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~i-n~~-----d~~G~TpL~~Aa~~g~~~iv~~Ll~~gad  267 (644)
                      ++|+++..    .++.||||.|+..++.+++++|+++ |++. +..     +..|.|++|.|+..++.+++++|+++|++
T Consensus       139 ~~GADIn~----~~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD  213 (437)
T PHA02795        139 DHGAVIYK----IECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED  213 (437)
T ss_pred             HCCCCCCC----CCCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC
Confidence            99999865    3568999999999999999999999 6643 332     23478999999999999999999999999


Q ss_pred             CCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhh
Q psy2733         268 LDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       268 vn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~  347 (644)
                      +|.+|..|.||||+|+..++                               .+++++|+++||+++.+|..|+||||+|+
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~-------------------------------~eiVelLL~~GAdIN~~d~~G~TpLh~Aa  262 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGY-------------------------------IDLVSWLLENGANVNAVMSNGYTCLDVAV  262 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCC-------------------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            99999999999999999998                               77999999999999999999999999999


Q ss_pred             cCC
Q psy2733         348 EDT  350 (644)
Q Consensus       348 ~~~  350 (644)
                      ..+
T Consensus       263 ~~g  265 (437)
T PHA02795        263 DRG  265 (437)
T ss_pred             HcC
Confidence            766

>KOG4369|consensus

Probab=99.93  E-value=3.6e-26  Score=249.53  Aligned_cols=297  Identities=20%  Similarity=0.164  Sum_probs=243.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +|+|..|+..|+.|.|++|+.+|+++..+|+.|.+||.+|+-.||..+|+.| .+.++++.                   
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~vea-------------------  818 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEA-------------------  818 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhh-------------------
Confidence            5899999999999999999999999999999999999999999999999998 77777755                   


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFE  152 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~  152 (644)
                                                  ..+..+.|+|.++.       +++||..|++-..++-..+|||.+|...|..
T Consensus       819 ----------------------------Qsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~  870 (2131)
T KOG4369|consen  819 ----------------------------QSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYT  870 (2131)
T ss_pred             ----------------------------hcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchH
Confidence                                        14556667776663       8999999999888888889999999999999


Q ss_pred             HHHHHHhcCCCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHh
Q psy2733         153 EIQLLLLSHPEVNLYLEN--SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK  230 (644)
Q Consensus       153 ~iv~~Ll~~~~~~~~~~d--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  230 (644)
                      +++..|+. .|.+++.+.  +.|..||++|..+|+...++.|++.+.+++.... .+.+|+|-+|+..|+.+++.+||..
T Consensus       871 ~iI~~llS-~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIe-TNrnTaltla~fqgr~evv~lLLa~  948 (2131)
T KOG4369|consen  871 KIIHALLS-SGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIE-TNRNTALTLALFQGRPEVVFLLLAA  948 (2131)
T ss_pred             HHHHHHhh-cccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccc-cccccceeeccccCcchHHHHHHHH
Confidence            99999999 788887764  6788999999999999999999999988877655 6788999999999999999999988


Q ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc--CCCCcHHHHHHHcCCcccccccccCCchhHHhhhh-
Q psy2733         231 YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQD--IDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLS-  307 (644)
Q Consensus       231 ~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d--~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~-  307 (644)
                       .+++..+-..|.||||-++..|++++-++||..|+|+|.--  ....|+|-+++..|+...++.+......+.-.... 
T Consensus       949 -~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG 1027 (2131)
T KOG4369|consen  949 -QANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKG 1027 (2131)
T ss_pred             -hhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCC
Confidence             68899999999999999999999999999999999988743  45678888888888866555544432221111100 


Q ss_pred             -cCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhh
Q psy2733         308 -VGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       308 -~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~  347 (644)
                       .....+.+.+++..+.+|++++||++..|+...++++-|.
T Consensus      1028 ~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maaf 1068 (2131)
T KOG4369|consen 1028 CTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAF 1068 (2131)
T ss_pred             CcccchhccCCccccchHHhhcccChhhhhcccccccHHHH
Confidence             0112344555677777888888888888877777777776

>KOG0502|consensus

Probab=99.92  E-value=4.1e-25  Score=204.06  Aligned_cols=185  Identities=19%  Similarity=0.240  Sum_probs=168.1

Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccC
Q psy2733         122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLAT  201 (644)
Q Consensus       122 v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  201 (644)
                      +..++.+|+..|..+..+++|+++++...+.+.+..+.+   ..+|..|..|+|||+||+.+|+..+|++||+.|+++..
T Consensus       112 ~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~  188 (296)
T KOG0502|consen  112 VSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDA  188 (296)
T ss_pred             eeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhh
Confidence            445778888888899999999999999998888888765   47889999999999999999999999999999999876


Q ss_pred             CcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHH
Q psy2733         202 VPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF  281 (644)
Q Consensus       202 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~  281 (644)
                      .-  ....++|++|++.|..++|++||.. +.|+|.-|.+|-|||-||++.|++++++.|+..|+|++..+..|++++-.
T Consensus       189 lg--k~resALsLAt~ggytdiV~lLL~r-~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdl  265 (296)
T KOG0502|consen  189 LG--KYRESALSLATRGGYTDIVELLLTR-EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDL  265 (296)
T ss_pred             hh--hhhhhhHhHHhcCChHHHHHHHHhc-CCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHH
Confidence            43  4678999999999999999999998 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcch
Q psy2733         282 LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLD  344 (644)
Q Consensus       282 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~  344 (644)
                      |+..|+                                .+|+..+++-+..+.+|+.-+||+|
T Consensus       266 AValGy--------------------------------r~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  266 AVALGY--------------------------------RIVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHhhh--------------------------------HHHHHHHHHHHHHHhhcccCCCCCC
Confidence            999887                                3778888877888888888888875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=3.8e-24  Score=249.08  Aligned_cols=237  Identities=21%  Similarity=0.159  Sum_probs=182.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC--CCCCcccCCCCCcHHH-HHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLAR--GACVYYPDDAGDTALH-YAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEK   77 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~--Ga~~n~~d~~G~TpLh-~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~   77 (644)
                      +++++.||+.|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++                          
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~l--------------------------   71 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTEL--------------------------   71 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHH--------------------------
Confidence            3578999999999999999999  8999999999999999 8889999999987                          


Q ss_pred             ccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC---CHHH
Q psy2733          78 VQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKG---FEEI  154 (644)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g---~~~i  154 (644)
                                                                     |+++|+    .+..|.||||.|+..+   ...+
T Consensus        72 -----------------------------------------------Ll~~g~----~~~~G~T~Lh~A~~~~~~~v~~l  100 (743)
T TIGR00870        72 -----------------------------------------------LLNLSC----RGAVGDTLLHAISLEYVDAVEAI  100 (743)
T ss_pred             -----------------------------------------------HHhCCC----CCCcChHHHHHHHhccHHHHHHH
Confidence                                                           445554    4567889999888732   2334


Q ss_pred             HHHHhcCCCCC------c----cccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcC------------CCCCchHH
Q psy2733         155 QLLLLSHPEVN------L----YLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPK------------TSDGFTPL  212 (644)
Q Consensus       155 v~~Ll~~~~~~------~----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~------------d~~g~T~L  212 (644)
                      +..+.. .+.+      +    ......|.||||+|+.+|+.++++.|++.|++++....            ...|.|||
T Consensus       101 l~~l~~-~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL  179 (743)
T TIGR00870       101 LLHLLA-AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPL  179 (743)
T ss_pred             HHHHhh-cccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHH
Confidence            444444 2211      1    11234689999999999999999999999888764211            13589999


Q ss_pred             HHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC---------CHHHHHHHHHCCCCC-------CcccCCCC
Q psy2733         213 HVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQG---------QTSVINYLMLRDVAL-------DIQDIDGN  276 (644)
Q Consensus       213 h~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g---------~~~iv~~Ll~~gadv-------n~~d~~G~  276 (644)
                      |.|+..|+.+++++|++. |++++.+|..|+||||+|+..+         ...+.+++++.++..       +..|.+|.
T Consensus       180 ~~Aa~~~~~~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~  258 (743)
T TIGR00870       180 NAAACLGSPSIVALLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGL  258 (743)
T ss_pred             HHHHHhCCHHHHHHHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCC
Confidence            999999999999999988 7999999999999999999987         234666777665554       66799999


Q ss_pred             cHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhh
Q psy2733         277 GLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       277 T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~  347 (644)
                      ||||+|+..++                               .+++++|++.+++.......+..|.+.+.
T Consensus       259 TPL~~A~~~g~-------------------------------~~l~~lLL~~~~~~kk~~a~~~~~~~~~~  298 (743)
T TIGR00870       259 TPLKLAAKEGR-------------------------------IVLFRLKLAIKYKQKKFVAWPNGQQLLSL  298 (743)
T ss_pred             CchhhhhhcCC-------------------------------ccHHHHHHHHHHhcceeeccCcchHhHhh
Confidence            99999999998                               55888888866554444445555555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.91  E-value=4.3e-24  Score=228.43  Aligned_cols=237  Identities=23%  Similarity=0.248  Sum_probs=180.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHC-------------CCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhh
Q psy2733           3 LLHILAYQGCVEELNILLAR-------------GACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKER   69 (644)
Q Consensus         3 pLh~Aa~~G~~e~vk~LL~~-------------Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~   69 (644)
                      =|--|+..|+++.+..||+.             ..+.|..|.+|.|+||.|+.+|+.+++++|                 
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~ll-----------------   68 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLL-----------------   68 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHH-----------------
Confidence            46789999999999999985             134677899999999999999999999985                 


Q ss_pred             hhccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q psy2733          70 HRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAK  149 (644)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~  149 (644)
                                                                              +++.+-++..|..|.+|||+|++.
T Consensus        69 --------------------------------------------------------le~ea~ldl~d~kg~~plhlaaw~   92 (854)
T KOG0507|consen   69 --------------------------------------------------------LDYEALLDLCDTKGILPLHLAAWN   92 (854)
T ss_pred             --------------------------------------------------------hcchhhhhhhhccCcceEEehhhc
Confidence                                                                    333333334556777788888888


Q ss_pred             CCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHH
Q psy2733         150 GFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE  229 (644)
Q Consensus       150 g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  229 (644)
                      |+.+++++|+. .+..+|..+-.|.||||.|+..|+.+++.+|+.++++...  .+..+.|+|.+|++.|..++|+.|+.
T Consensus        93 g~~e~vkmll~-q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i--~nns~~t~ldlA~qfgr~~Vvq~ll~  169 (854)
T KOG0507|consen   93 GNLEIVKMLLL-QTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFI--RNNSKETVLDLASRFGRAEVVQMLLQ  169 (854)
T ss_pred             CcchHHHHHHh-cccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccc--cCcccccHHHHHHHhhhhHHHHHHhh
Confidence            88888887777 5677777777788888888888888888888887777665  55677788888888888888887776


Q ss_pred             hcCCCc--------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchh
Q psy2733         230 KYKVNI--------NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPI  301 (644)
Q Consensus       230 ~~g~~i--------n~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~  301 (644)
                      . ...+        ..++..+.+|||+|+++|+.++++.|++.|.|+|.....| |+||.|+..|.              
T Consensus       170 ~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk--------------  233 (854)
T KOG0507|consen  170 K-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGK--------------  233 (854)
T ss_pred             h-ccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCc--------------
Confidence            5 2221        2344566778888888888888888888888888776655 78888887777              


Q ss_pred             HHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhc
Q psy2733         302 YEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILE  348 (644)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~  348 (644)
                                       .+++.+|++.|.+..++|.+|+|+|++...
T Consensus       234 -----------------~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  234 -----------------AEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             -----------------chhhhHHHhhccccccccccchHHHHHHHh
Confidence                             558888888888888888888888877764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=5.5e-23  Score=240.89  Aligned_cols=194  Identities=18%  Similarity=0.228  Sum_probs=171.9

Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCC
Q psy2733          11 GCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPE   90 (644)
Q Consensus        11 G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (644)
                      ...++-..+.+.++.  ..+.++.++|+.||..|+.++++.                                       
T Consensus       505 ~~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~---------------------------------------  543 (823)
T PLN03192        505 HDLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEE---------------------------------------  543 (823)
T ss_pred             ccccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHH---------------------------------------
Confidence            344555555555553  245567899999999999998876                                       


Q ss_pred             CcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccC
Q psy2733          91 TPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN  170 (644)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d  170 (644)
                                                        |++.|+++|..|..|.||||+|+..|+.+++++|++ .|++++.+|
T Consensus       544 ----------------------------------Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~d  588 (823)
T PLN03192        544 ----------------------------------LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRD  588 (823)
T ss_pred             ----------------------------------HHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCcC
Confidence                                              788899999999999999999999999999999999 799999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHH
Q psy2733         171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV  250 (644)
Q Consensus       171 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa  250 (644)
                      .+|.||||+|+..|+.++++.|++.++...    ...|.++||.|+..|+.++++.|+++ |+++|.+|.+|.||||+|+
T Consensus       589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~----~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~  663 (823)
T PLN03192        589 ANGNTALWNAISAKHHKIFRILYHFASISD----PHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAM  663 (823)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhcCcccC----cccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999998776543    25678999999999999999999998 8999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCcccCCC-CcHHHHHHHc
Q psy2733         251 GQGQTSVINYLMLRDVALDIQDIDG-NGLLHFLFIK  285 (644)
Q Consensus       251 ~~g~~~iv~~Ll~~gadvn~~d~~G-~T~Lh~A~~~  285 (644)
                      ..|+.+++++|+++|++++..|..| .||+.++...
T Consensus       664 ~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        664 AEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            9999999999999999999999988 8998877543

>KOG0502|consensus

Probab=99.89  E-value=3.6e-24  Score=197.82  Aligned_cols=224  Identities=21%  Similarity=0.151  Sum_probs=195.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCC
Q psy2733           4 LHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         4 Lh~Aa~~G~~e~vk~LL~~Ga~-~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      +-.|.+.|+.+++..++....+ +...|.+|+.+++.|+-.++.+.+..+ ..++..|.                     
T Consensus        66 ~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgne---------------------  124 (296)
T KOG0502|consen   66 LTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNE---------------------  124 (296)
T ss_pred             cchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCc---------------------
Confidence            4568888999999888877654 456678899999999999988888776 66666655                     


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-----DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL  156 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-----v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~  156 (644)
                                                 ....+.+|+++++     ...++.....+|..|..|.|||+||+..|++.+|+
T Consensus       125 ---------------------------vs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~  177 (296)
T KOG0502|consen  125 ---------------------------VSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQ  177 (296)
T ss_pred             ---------------------------cccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHH
Confidence                                       6667778888776     22233345678999999999999999999999999


Q ss_pred             HHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcc
Q psy2733         157 LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN  236 (644)
Q Consensus       157 ~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in  236 (644)
                      +||+ .|++++...+...++|++|++.|..++|++||..+.+++.  -|-+|-|||.+|++.|+.++++.|++. |++++
T Consensus       178 fLL~-~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNv--yDwNGgTpLlyAvrgnhvkcve~Ll~s-GAd~t  253 (296)
T KOG0502|consen  178 FLLN-SGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNV--YDWNGGTPLLYAVRGNHVKCVESLLNS-GADVT  253 (296)
T ss_pred             HHHH-cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcce--eccCCCceeeeeecCChHHHHHHHHhc-CCCcc
Confidence            9999 8999999999999999999999999999999999998877  456899999999999999999999998 89999


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHH
Q psy2733         237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH  280 (644)
Q Consensus       237 ~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh  280 (644)
                      ..|..|++++-+|+..|+. +|+..+++-++.+.+|+.-++|+|
T Consensus       254 ~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  254 QEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             cccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            9999999999999999998 899999998888889888888775

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=1.8e-22  Score=236.47  Aligned_cols=175  Identities=19%  Similarity=0.235  Sum_probs=161.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHH
Q psy2733         136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVA  215 (644)
Q Consensus       136 d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A  215 (644)
                      +.++.++|+.|+..|+.++++.|++ .|++++..|..|.||||+|+..|+.++++.|+++|++++.  .|.+|+||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~--~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLK-AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI--RDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC--cCCCCCCHHHHH
Confidence            4467799999999999999999999 7999999999999999999999999999999999988765  668999999999


Q ss_pred             HhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccc
Q psy2733         216 CFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITR  295 (644)
Q Consensus       216 ~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~  295 (644)
                      +..|+.+++++|++. +...+  ...|.++||.|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..++        
T Consensus       599 ~~~g~~~iv~~L~~~-~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~--------  667 (823)
T PLN03192        599 ISAKHHKIFRILYHF-ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH--------  667 (823)
T ss_pred             HHhCCHHHHHHHHhc-CcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc--------
Confidence            999999999999976 44433  3567799999999999999999999999999999999999999999998        


Q ss_pred             cCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCC-CCcchhhh
Q psy2733         296 EKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNR-QKPLDLIL  347 (644)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G-~TpL~~A~  347 (644)
                                             .+++++|+++||+++.+|..| .||++++.
T Consensus       668 -----------------------~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        668 -----------------------VDMVRLLIMNGADVDKANTDDDFSPTELRE  697 (823)
T ss_pred             -----------------------HHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence                                   779999999999999999998 99998875

>KOG0507|consensus

Probab=99.88  E-value=1e-22  Score=217.92  Aligned_cols=210  Identities=24%  Similarity=0.342  Sum_probs=189.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      |+||.|+.+|+.+++++|++..+-++..|..|.+|||+|+..|+.|++++                              
T Consensus        51 Talhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkm------------------------------  100 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKM------------------------------  100 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHH------------------------------
Confidence            89999999999999999999999999999999999999999999999987                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |+..+..+|.....|.||||.|++.|+.+++.+|++ 
T Consensus       101 -------------------------------------------ll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~-  136 (854)
T KOG0507|consen  101 -------------------------------------------LLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLK-  136 (854)
T ss_pred             -------------------------------------------HHhcccCCCcccccCcCccchhhhhcchHHHHHHHh-
Confidence                                                       555556677888899999999999999999999999 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCc------cCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCc
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNL------ATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI  235 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~------~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~i  235 (644)
                      .++++-++++.+.|+|-.|++.|..++++.|++..-..      .....+..+-+|||+|+++|+.++++.|+.. |+++
T Consensus       137 ~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a-g~di  215 (854)
T KOG0507|consen  137 KNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA-GFDI  215 (854)
T ss_pred             cCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc-CCCc
Confidence            89999999999999999999999999999999862211      1222345677899999999999999999998 8999


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       236 n~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      |.....| |+||-|+..|..++|.+|++.|.+..++|.+|+|+|.+......
T Consensus       216 n~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  216 NYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             ccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcch
Confidence            9998876 99999999999999999999999999999999999998765433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=2.4e-22  Score=234.02  Aligned_cols=207  Identities=24%  Similarity=0.303  Sum_probs=155.7

Q ss_pred             HHhC--CCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcC---CHHHHHHHHHhcCC
Q psy2733         125 LLRN--GCNVNIQDNNQDTPMH-DAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG---NMKVTEKILALNRN  198 (644)
Q Consensus       125 Ll~~--gad~n~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~  198 (644)
                      +++.  +.++|..|..|+|||| .|+.+++.+++++|++ .+.    .+..|.||||.|+..+   ...+++.+...+..
T Consensus        36 lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~-~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~  110 (743)
T TIGR00870        36 DLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLN-LSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRK  110 (743)
T ss_pred             HhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHh-CCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccc
Confidence            4555  6788889999999999 8888999999999999 554    6778999999998732   22233333333322


Q ss_pred             cc--------CCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC--------------CCCCCHHHHHHHcCCHH
Q psy2733         199 LA--------TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD--------------LKKRTPLMAAVGQGQTS  256 (644)
Q Consensus       199 ~~--------~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d--------------~~G~TpL~~Aa~~g~~~  256 (644)
                      ..        ....+..|.||||+|+..|+.++|++|+++ |++++.++              ..|.||||+|+..|+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~  189 (743)
T TIGR00870       111 SGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS  189 (743)
T ss_pred             cCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHH
Confidence            10        011224699999999999999999999998 89998653              36899999999999999


Q ss_pred             HHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCC----
Q psy2733         257 VINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPL----  332 (644)
Q Consensus       257 iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi----  332 (644)
                      ++++|+++|+|++.+|..|+||||+|+..+....          .+            ......+.+++++.++..    
T Consensus       190 iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~----------~~------------~~l~~~~~~~l~~ll~~~~~~~  247 (743)
T TIGR00870       190 IVALLSEDPADILTADSLGNTLLHLLVMENEFKA----------EY------------EELSCQMYNFALSLLDKLRDSK  247 (743)
T ss_pred             HHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhH----------HH------------HHHHHHHHHHHHHHHhccCChH
Confidence            9999999999999999999999999998764210          00            011123556666655543    


Q ss_pred             ---CCCCCCCCCcchhhhcCC--cHHHHHHHH
Q psy2733         333 ---SLENNNRQKPLDLILEDT--SLLNEIMEH  359 (644)
Q Consensus       333 ---~~~n~~G~TpL~~A~~~~--~~~~~l~~~  359 (644)
                         +++|.+|.|||++|++.+  ++.+.+++.
T Consensus       248 el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence               778999999999999654  455555543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.88  E-value=2e-22  Score=209.46  Aligned_cols=225  Identities=29%  Similarity=0.346  Sum_probs=191.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCC
Q psy2733           4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSN   83 (644)
Q Consensus         4 Lh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (644)
                      +.-|++.|..+-|+.|+..|++++..+.+|.|+||-++...+.+||++                                
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~--------------------------------   91 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKF--------------------------------   91 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHH--------------------------------
Confidence            345788999999999999999999999999999999999999999987                                


Q ss_pred             CCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCC
Q psy2733          84 LPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE  163 (644)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  163 (644)
                                                               |+++|+++|..|..||||||.|+..|+..++++|++ .|
T Consensus        92 -----------------------------------------l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~-~g  129 (527)
T KOG0505|consen   92 -----------------------------------------LVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQ-HG  129 (527)
T ss_pred             -----------------------------------------HHHhcCCccccccccCCcchhhcccccHHHHHHHHH-hh
Confidence                                                     888999999999999999999999999999999999 79


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcC----cH-HHHHHHHHhcCCCcccC
Q psy2733         164 VNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFND----HI-EIVELLVEKYKVNINAL  238 (644)
Q Consensus       164 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g----~~-~~v~~Ll~~~g~~in~~  238 (644)
                      +++...+.+|..|+-.|..-...+++..-....           |-+  .-|++.-    .. ++-.++ .. |.+.+..
T Consensus       130 A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~-----------gi~--iea~R~~~e~~ml~D~~q~l-~~-G~~~d~~  194 (527)
T KOG0505|consen  130 ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQ-----------GID--IEAARKAEEQTMLDDARQWL-NA-GAELDAR  194 (527)
T ss_pred             hhhhhccCCCCCccccccCcchhHHHHHHHHHh-----------ccc--HHHHhhhhHHHHHHHHHHHH-hc-ccccccc
Confidence            999999999999988877655555544433221           112  1122111    11 233333 33 7888999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchH
Q psy2733         239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGIL  318 (644)
Q Consensus       239 d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (644)
                      +..|.|+||.|+.+|+.++.++|++.|.+++++|.+||||||.|+..+.                               
T Consensus       195 ~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~-------------------------------  243 (527)
T KOG0505|consen  195 HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQ-------------------------------  243 (527)
T ss_pred             ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhh-------------------------------
Confidence            9889999999999999999999999999999999999999999999988                               


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCcchhhhc
Q psy2733         319 LAVFLFLVKHGAPLSLENNNRQKPLDLILE  348 (644)
Q Consensus       319 ~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~  348 (644)
                      .+++++|+.+|++.+.++..|.||+++|.+
T Consensus       244 ~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  244 EDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            669999999999999999999999999974

>KOG0514|consensus

Probab=99.86  E-value=6.9e-22  Score=195.41  Aligned_cols=155  Identities=22%  Similarity=0.365  Sum_probs=140.2

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHc-----CCHHHHHHHHHhcCCccCCcCCC
Q psy2733         132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR-----GNMKVTEKILALNRNLATVPKTS  206 (644)
Q Consensus       132 ~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~d~  206 (644)
                      +|..|.+|+|+||||+.++|.++|+.||+..-.+++..+.-|+||+|+|+..     .+..+|..|+..| +++.. -..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaK-AsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAK-ASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchh-hhh
Confidence            6889999999999999999999999999966689999999999999999864     3677899999876 33333 337


Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCcHHHHHHHc
Q psy2733         207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR-DVALDIQDIDGNGLLHFLFIK  285 (644)
Q Consensus       207 ~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~-gadvn~~d~~G~T~Lh~A~~~  285 (644)
                      .|+|+||+|+.+|+.++|+.||.. |+|+|.+|.+|-|+||.|+..||.+++++||.. ++|+...|.+|.|+|++|...
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLac-gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLAC-GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHc-cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            899999999999999999999987 899999999999999999999999999999955 899999999999999999999


Q ss_pred             CCcc
Q psy2733         286 KNFY  289 (644)
Q Consensus       286 ~~~~  289 (644)
                      |+.+
T Consensus       418 gh~e  421 (452)
T KOG0514|consen  418 GHRE  421 (452)
T ss_pred             CchH
Confidence            9944

>KOG0514|consensus

Probab=99.85  E-value=2.2e-21  Score=191.91  Aligned_cols=162  Identities=28%  Similarity=0.381  Sum_probs=144.0

Q ss_pred             CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccC
Q psy2733          26 VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED  105 (644)
Q Consensus        26 ~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (644)
                      +|.-|.+|+|+||||+.++++++|+.                                                      
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~------------------------------------------------------  286 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSI------------------------------------------------------  286 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHH------------------------------------------------------
Confidence            57789999999999999999999987                                                      


Q ss_pred             CCCCCcccchhhHHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcC-----CHHHHHHHhcCCCCCcccc-CCCCCcHHH
Q psy2733         106 MLDTPSAECSGILIKQDFVLLRNG-CNVNIQDNNQDTPMHDAVAKG-----FEEIQLLLLSHPEVNLYLE-NSKGFNILN  178 (644)
Q Consensus       106 ~~~~~~~~~t~L~~a~v~~Ll~~g-ad~n~~d~~G~TpL~~A~~~g-----~~~iv~~Ll~~~~~~~~~~-d~~g~tpL~  178 (644)
                                         ||+.| ++++.++..|+||+|+|+...     +.++|..|... | ++|.+ ...|.|+||
T Consensus       287 -------------------LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-g-nVNaKAsQ~gQTALM  345 (452)
T KOG0514|consen  287 -------------------LLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-G-DVNAKASQHGQTALM  345 (452)
T ss_pred             -------------------HhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-c-Ccchhhhhhcchhhh
Confidence                               44443 788889999999999988643     67899999984 3 55554 467999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHH
Q psy2733         179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVI  258 (644)
Q Consensus       179 ~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv  258 (644)
                      +|+.+|+.++|+.||.-|++++.  +|.+|.|+||.|+.+|+.+++++||...++|+...|.+|-|+|++|...|+.+|.
T Consensus       346 LAVSHGr~d~vk~LLacgAdVNi--QDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  346 LAVSHGRVDMVKALLACGADVNI--QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             hhhhcCcHHHHHHHHHccCCCcc--ccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHH
Confidence            99999999999999999999887  7789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHC
Q psy2733         259 NYLMLR  264 (644)
Q Consensus       259 ~~Ll~~  264 (644)
                      -+|..+
T Consensus       424 ~mlYa~  429 (452)
T KOG0514|consen  424 VMLYAH  429 (452)
T ss_pred             HHHHHH
Confidence            888743

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=3.9e-20  Score=174.72  Aligned_cols=148  Identities=16%  Similarity=0.170  Sum_probs=131.9

Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHH---HHHHHHhcCCc
Q psy2733         127 RNGCNVNIQDNNQDTPMHDAVAKGFE----EIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV---TEKILALNRNL  199 (644)
Q Consensus       127 ~~gad~n~~d~~G~TpL~~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~  199 (644)
                      .+|++++..+.++.++||.|++.|+.    +++++|++ .+..++..|..|+||||+|+..|+.+.   +++|++.++++
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~-~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISG-DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhh-cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            36788888888999999999999997    56667777 788899999999999999999988654   89999999887


Q ss_pred             cCCcCC-CCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCc
Q psy2733         200 ATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG  277 (644)
Q Consensus       200 ~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T  277 (644)
                      ..  ++ ..|+||||+|+..|+.+++++|+...|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|..
T Consensus        87 n~--~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         87 NA--RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CC--CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            65  44 579999999999999999999996448999999999999999999999999999999999999999988753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=4.1e-20  Score=174.58  Aligned_cols=146  Identities=18%  Similarity=0.142  Sum_probs=127.7

Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHH---HHHHHHhcCCC
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNM----KVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEI---VELLVEKYKVN  234 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~---v~~Ll~~~g~~  234 (644)
                      .+++++..+.++.++||+|+..|+.    ++++.|++.+.....  .|..|+||||+|+..|+.+.   +++|++. |++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~--~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gad   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHR--YDHHGRQCTHMVAWYDRANAVMKIELLVNM-GAD   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhc--cCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCC
Confidence            4566777888899999999999998    556667777765543  56889999999999987654   7899988 899


Q ss_pred             cccCC-CCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCC
Q psy2733         235 INALD-LKKRTPLMAAVGQGQTSVINYLML-RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPS  312 (644)
Q Consensus       235 in~~d-~~G~TpL~~Aa~~g~~~iv~~Ll~-~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (644)
                      +|.+| ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++                         
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~-------------------------  140 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD-------------------------  140 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC-------------------------
Confidence            99998 589999999999999999999995 799999999999999999999988                         


Q ss_pred             CccchHHHHHHHHHHcCCCCCCCCCCCCC
Q psy2733         313 NEHGILLAVFLFLVKHGAPLSLENNNRQK  341 (644)
Q Consensus       313 ~~~~~~~~iv~~Ll~~Gadi~~~n~~G~T  341 (644)
                            .+++++|+++|++++.++..|.+
T Consensus       141 ------~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        141 ------RRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             ------HHHHHHHHHcCCCCCCcccCCcc
Confidence                  67999999999999999988754

>KOG4369|consensus

Probab=99.83  E-value=2.4e-21  Score=212.24  Aligned_cols=279  Identities=19%  Similarity=0.184  Sum_probs=240.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYY-PDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~-~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +||.+|+-.||..+|+.|+++.++++. .|..++|+|-+|+..|+.++|++| ..++.-...+...++++..+....+..
T Consensus       792 ~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~  871 (2131)
T KOG4369|consen  792 VPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTK  871 (2131)
T ss_pred             hhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHH
Confidence            789999999999999999999999875 478899999999999999999999 888888777777777766655444332


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCC--CCCcccchhhHHHH-------HHHHHhCCCCCCCCC-CCCCcHHHHHHHc
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDML--DTPSAECSGILIKQ-------DFVLLRNGCNVNIQD-NNQDTPMHDAVAK  149 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d-~~G~TpL~~A~~~  149 (644)
                      .               +..+...+.+++  ...+.|.+||+++.       ++.|++.|.|+|.+- .+.+|+|-+|+..
T Consensus       872 i---------------I~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq  936 (2131)
T KOG4369|consen  872 I---------------IHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ  936 (2131)
T ss_pred             H---------------HHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecccc
Confidence            2               222233332222  24456788999984       899999999999664 4778999999999


Q ss_pred             CCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHH
Q psy2733         150 GFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE  229 (644)
Q Consensus       150 g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  229 (644)
                      |..+++.+||. ..+++..+-+.|.|||+-++..|.+++-+.|+..|++.+.......-.|+|-+++..|+...|+.|++
T Consensus       937 gr~evv~lLLa-~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen  937 GRPEVVFLLLA-AQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN 1015 (2131)
T ss_pred             CcchHHHHHHH-HhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhC
Confidence            99999999999 79999999999999999999999999999999999998887766667799999999999999999998


Q ss_pred             hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccC
Q psy2733         230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREK  297 (644)
Q Consensus       230 ~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~  297 (644)
                      . .+-++.++..|.|+|.+|+..|+...+.+|+++++|++.+|+.-.++++-|.++|++.++++....
T Consensus      1016 ~-~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1016 G-DATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPP 1082 (2131)
T ss_pred             C-ccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCc
Confidence            6 688999999999999999999999999999999999999999999999999999999988776544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=7.4e-19  Score=179.11  Aligned_cols=145  Identities=20%  Similarity=0.206  Sum_probs=94.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccC----CCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccc
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPD----DAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEK   77 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d----~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~   77 (644)
                      ++||.|++.|+.+++++|+++||+++.++    ..|.||||+|+..++.+++++                          
T Consensus        35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivkl--------------------------   88 (300)
T PHA02884         35 NILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKL--------------------------   88 (300)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHH--------------------------
Confidence            45666666677777777777777777653    467777777777777777665                          


Q ss_pred             ccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHH
Q psy2733          78 VQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQ-DNNQDTPMHDAVAKGFEEIQL  156 (644)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~-d~~G~TpL~~A~~~g~~~iv~  156 (644)
                                                                     |+++|+++|.. +..|.||||+|+..|+.++++
T Consensus        89 -----------------------------------------------LL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivk  121 (300)
T PHA02884         89 -----------------------------------------------LIRYGADVNRYAEEAKITPLYISVLHGCLKCLE  121 (300)
T ss_pred             -----------------------------------------------HHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHH
Confidence                                                           56666666654 345777777777777777777


Q ss_pred             HHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHh
Q psy2733         157 LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK  230 (644)
Q Consensus       157 ~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  230 (644)
                      +|+. .|++++.+|..|.||||+|+..++..++..+...+       .+..+.+|++++   ++.+++++|+++
T Consensus       122 lLL~-~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~n~ei~~~Lish  184 (300)
T PHA02884        122 ILLS-YGADINIQTNDMVTPIELALMICNNFLAFMICDNE-------ISNFYKHPKKIL---INFDILKILVSH  184 (300)
T ss_pred             HHHH-CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-------ccccccChhhhh---ccHHHHHHHHHH
Confidence            7777 57777777777777777777766666654443211       224455666654   356666666665

>KOG0505|consensus

Probab=99.79  E-value=2e-19  Score=187.26  Aligned_cols=196  Identities=23%  Similarity=0.247  Sum_probs=144.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      |+||.|+...+.++|++|+++|+++|..|.+||||||.|+..|+..++.+|                             
T Consensus        75 Talhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~l-----------------------------  125 (527)
T KOG0505|consen   75 TALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYL-----------------------------  125 (527)
T ss_pred             hhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHH-----------------------------
Confidence            899999999999999999999999999999999999999999999999985                             


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                  +.+|+++-..+.+|..|+-++..--..+++..-...
T Consensus       126 --------------------------------------------i~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r  161 (527)
T KOG0505|consen  126 --------------------------------------------IQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMAR  161 (527)
T ss_pred             --------------------------------------------HHhhhhhhhccCCCCCccccccCcchhHHHHHHHHH
Confidence                                                        444444444455555555544433333333333332


Q ss_pred             CCCCccccCCCCCcHHHHHHHcC---CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccC
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRG---NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL  238 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~  238 (644)
                      .+++++           .+-...   ...=++..+..|.......  ..|.|.||.|+..|..++.++|+.. |.+++.+
T Consensus       162 ~gi~ie-----------a~R~~~e~~ml~D~~q~l~~G~~~d~~~--~rG~T~lHvAaa~Gy~e~~~lLl~a-g~~~~~~  227 (527)
T KOG0505|consen  162 QGIDIE-----------AARKAEEQTMLDDARQWLNAGAELDARH--ARGATALHVAAANGYTEVAALLLQA-GYSVNIK  227 (527)
T ss_pred             hcccHH-----------HHhhhhHHHHHHHHHHHHhccccccccc--cccchHHHHHHhhhHHHHHHHHHHh-ccCcccc
Confidence            222211           111111   1112333444555544432  3388999999999999999999988 7899999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHH
Q psy2733         239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI  284 (644)
Q Consensus       239 d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~  284 (644)
                      |.+|+||||.|+..|..+++++|+++|++++.....|.||+-+|..
T Consensus       228 D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  228 DYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            9999999999999999999999999999999999999999888764

>PHA02741 hypothetical protein; Provisional

Probab=99.79  E-value=8e-19  Score=166.45  Aligned_cols=135  Identities=13%  Similarity=0.239  Sum_probs=119.0

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHhcC-----CCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHHhcCCccCC
Q psy2733         132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-----PEVNLYLENSKGFNILNYAVLRGN----MKVTEKILALNRNLATV  202 (644)
Q Consensus       132 ~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-----~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~  202 (644)
                      ++.+|..|.||||+|++.|+.++++.|+..     .+++++.+|..|.||||+|+..|+    .+++++|++.++++.. 
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA-   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-
Confidence            345778999999999999999999988542     367889999999999999999998    5889999999988765 


Q ss_pred             cCC-CCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Q psy2733         203 PKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVAL  268 (644)
Q Consensus       203 ~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadv  268 (644)
                       ++ ..|+||||+|+..++.+++++|+...|++++..|..|+||||+|+..|+.+++++|++.++..
T Consensus        93 -~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         93 -QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             -CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence             34 489999999999999999999998558999999999999999999999999999999876553

>KOG0512|consensus

Probab=99.79  E-value=1.1e-18  Score=156.08  Aligned_cols=155  Identities=23%  Similarity=0.271  Sum_probs=130.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCH
Q psy2733         176 ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT  255 (644)
Q Consensus       176 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~  255 (644)
                      -+.+|+..+....|+.||+..++..+. +|.+|+||||.|+.+|+.++|+.|+.. |++++.+...|+||||.|+..++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNt-rD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNT-RDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccc-cccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccch
Confidence            366889999999999999988876665 458999999999999999999999987 899999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCC
Q psy2733         256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLE  335 (644)
Q Consensus       256 ~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~  335 (644)
                      +++-+|+.+|+|||+......||||+|+...+..                             ..+.-+|.+.+.++..+
T Consensus       144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r-----------------------------~t~~~Ll~dryi~pg~~  194 (228)
T KOG0512|consen  144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSR-----------------------------DTLELLLHDRYIHPGLK  194 (228)
T ss_pred             hHHHHHHhccCcccccccccchhhHHhhcccchH-----------------------------HHHHHHhhccccChhhh
Confidence            9999999999999999999999999999877632                             22334455778999999


Q ss_pred             CCCCCCcchhhhcCCcHHHHHHHHhhh
Q psy2733         336 NNNRQKPLDLILEDTSLLNEIMEHARE  362 (644)
Q Consensus       336 n~~G~TpL~~A~~~~~~~~~l~~~~~~  362 (644)
                      ++.+.||+++|. ...+...|.+..+.
T Consensus       195 nn~eeta~~iAR-RT~~s~~lfe~~e~  220 (228)
T KOG0512|consen  195 NNLEETAFDIAR-RTSMSHYLFEIVEG  220 (228)
T ss_pred             cCccchHHHHHH-HhhhhHHHHHHHHH
Confidence            999999999998 44444445444443

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=2.2e-18  Score=163.43  Aligned_cols=131  Identities=20%  Similarity=0.283  Sum_probs=115.8

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHh------cCCccCCcCCCCCchHHHHHHhcCc----HHHHHHHHHhcCCCccc
Q psy2733         168 LENSKGFNILNYAVLRGNMKVTEKILAL------NRNLATVPKTSDGFTPLHVACFNDH----IEIVELLVEKYKVNINA  237 (644)
Q Consensus       168 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~------~~~~~~~~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~~g~~in~  237 (644)
                      .++..|.||||+|+..|+.++++.|+..      ++.+.  ..|..|+||||+|+..|+    .+++++|++. |++++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in--~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~   92 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN--ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINA   92 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh--ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCC
Confidence            4678899999999999999999998653      23333  356889999999999998    5889999987 899999


Q ss_pred             CCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCcc
Q psy2733         238 LDL-KKRTPLMAAVGQGQTSVINYLML-RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEH  315 (644)
Q Consensus       238 ~d~-~G~TpL~~Aa~~g~~~iv~~Ll~-~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (644)
                      ++. .|+||||+|+..++.+++++|++ .|++++.+|.+|+||||+|+..++                            
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~----------------------------  144 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNED----------------------------  144 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC----------------------------
Confidence            985 99999999999999999999997 599999999999999999999988                            


Q ss_pred             chHHHHHHHHHHcCCCC
Q psy2733         316 GILLAVFLFLVKHGAPL  332 (644)
Q Consensus       316 ~~~~~iv~~Ll~~Gadi  332 (644)
                         .+++++|++.++..
T Consensus       145 ---~~iv~~L~~~~~~~  158 (169)
T PHA02741        145 ---VAMMQILREIVATS  158 (169)
T ss_pred             ---HHHHHHHHHHHHHh
Confidence               67999999887654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=9.2e-19  Score=163.49  Aligned_cols=97  Identities=21%  Similarity=0.220  Sum_probs=78.0

Q ss_pred             CCCCchHHHHHHhcCcH---HHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCcHH
Q psy2733         205 TSDGFTPLHVACFNDHI---EIVELLVEKYKVNINALD-LKKRTPLMAAVGQGQTSVINYLML-RDVALDIQDIDGNGLL  279 (644)
Q Consensus       205 d~~g~T~Lh~A~~~g~~---~~v~~Ll~~~g~~in~~d-~~G~TpL~~Aa~~g~~~iv~~Ll~-~gadvn~~d~~G~T~L  279 (644)
                      |..|.||||+|+..|+.   +++++|++. |++++.+| ..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL  130 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY  130 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH
Confidence            46788888888888775   457778877 78888887 478888888888888888888886 4888888888888888


Q ss_pred             HHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCC
Q psy2733         280 HFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLS  333 (644)
Q Consensus       280 h~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~  333 (644)
                      |+|+..++                               .+++++|+++|++.+
T Consensus       131 ~~A~~~~~-------------------------------~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        131 YVACERHD-------------------------------AKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHcCC-------------------------------HHHHHHHHHcCCCCC
Confidence            88888777                               668888888888765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=2e-18  Score=161.24  Aligned_cols=134  Identities=18%  Similarity=0.218  Sum_probs=111.8

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHhcC------CCCCccccCCCCCcHHHHHHHcCCHH---HHHHHHHhcCCccCC
Q psy2733         132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSH------PEVNLYLENSKGFNILNYAVLRGNMK---VTEKILALNRNLATV  202 (644)
Q Consensus       132 ~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~------~~~~~~~~d~~g~tpL~~A~~~g~~~---~v~~Ll~~~~~~~~~  202 (644)
                      ++..|.+|.||||+|++.|+..  .++...      .+..++..|..|.||||+|+..|+.+   +++.|++.+++++. 
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~-   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING-   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc-
Confidence            3556789999999999999842  222210      11123456889999999999999874   68899999988765 


Q ss_pred             cCC-CCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy2733         203 PKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD  269 (644)
Q Consensus       203 ~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn  269 (644)
                       .+ ..|+||||+|+..|+.+++++|+...|++++.+|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        87 -~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 -KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             -cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence             44 5899999999999999999999986589999999999999999999999999999999999875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=1.3e-17  Score=170.10  Aligned_cols=141  Identities=13%  Similarity=0.089  Sum_probs=112.3

Q ss_pred             CCCCCCCc-HHHHHHHcCCHHHHHHHhcCCCCCccccC----CCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCC
Q psy2733         134 IQDNNQDT-PMHDAVAKGFEEIQLLLLSHPEVNLYLEN----SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDG  208 (644)
Q Consensus       134 ~~d~~G~T-pL~~A~~~g~~~iv~~Ll~~~~~~~~~~d----~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g  208 (644)
                      .+|..|+| +||.|++.|+.+++++|++ .|++++.++    ..|.||||+|+..|+.+++++|++.|+++.... +..|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~-~~~g  104 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA-EEAK  104 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc-CCCC
Confidence            45666665 5666777789999999999 799998874    578999999999999999999999988876522 2568


Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHH
Q psy2733         209 FTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFL  282 (644)
Q Consensus       209 ~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A  282 (644)
                      .||||+|+..++.+++++|++. |++++.+|..|.||||+|+..++..++.++.  |..   .+..+.+|++++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~  172 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL  172 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh
Confidence            8999999999999999999988 7999999999999999999888888776554  322   455667777764

>KOG0512|consensus

Probab=99.75  E-value=1.5e-17  Score=148.87  Aligned_cols=142  Identities=25%  Similarity=0.205  Sum_probs=103.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCC
Q psy2733           4 LHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPS   82 (644)
Q Consensus         4 Lh~Aa~~G~~e~vk~LL~~Ga~-~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (644)
                      +.+|+..|.+..|+.||+..++ +|.+|.+|+||||.|+.+|+.+||+.                               
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~-------------------------------  115 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHE-------------------------------  115 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHH-------------------------------
Confidence            5678888888888888888776 78888888888888888888888876                               


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCC
Q psy2733          83 NLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP  162 (644)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  162 (644)
                                                                |+..|++++.+...||||||-|++.++.+++.+||+ .
T Consensus       116 ------------------------------------------ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLq-h  152 (228)
T KOG0512|consen  116 ------------------------------------------LLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQ-H  152 (228)
T ss_pred             ------------------------------------------HHHccCCcccccccCccchhhhhcccchhHHHHHHh-c
Confidence                                                      666777777777888888888888888888888888 6


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcC
Q psy2733         163 EVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFND  219 (644)
Q Consensus       163 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g  219 (644)
                      |++++.......||||+|+...+....-.+|-....+.....+..+.||+.+|-+.+
T Consensus       153 gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  153 GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            888888887777888887766554433333323333333333455666666665554

>KOG0195|consensus

Probab=99.69  E-value=2.5e-17  Score=158.24  Aligned_cols=132  Identities=26%  Similarity=0.349  Sum_probs=70.9

Q ss_pred             HcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHH
Q psy2733         148 AKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL  227 (644)
Q Consensus       148 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L  227 (644)
                      +.|+.--+++-++....+.|.-|..|++|||+|++.|+..+++.|+..|+.++.  .+....||||+|+..|+.++|+.|
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~--tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS--TNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccccc--ccCCCCcchhhhhhcccHHHHHHH
Confidence            334333334334434555555555566666666666666666666555555443  222334555555555555555555


Q ss_pred             HHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHH
Q psy2733         228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFL  282 (644)
Q Consensus       228 l~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A  282 (644)
                      ++. .+|+|..+..|+|||||||..|+..+.+-|+..|+.+++.++.|.|||..|
T Consensus        87 l~~-kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   87 LSR-KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHH-hcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            554 455555555555555555555555555555555555555555555555543

>KOG0195|consensus

Probab=99.68  E-value=4.2e-17  Score=156.78  Aligned_cols=122  Identities=28%  Similarity=0.345  Sum_probs=113.2

Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcC
Q psy2733         125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPK  204 (644)
Q Consensus       125 Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  204 (644)
                      |-+..-|.|.-|..|.+|||+|++.|+..+++.|+. .|+.+|..+....||||+|+..|+.++|+.|++..++++.  .
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~-rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvna--v   96 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA--V   96 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHh-cccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch--h
Confidence            345567888899999999999999999999999999 7999999999999999999999999999999999998877  5


Q ss_pred             CCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHH
Q psy2733         205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV  250 (644)
Q Consensus       205 d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa  250 (644)
                      +..|+|||||||..|...+.+-|+.. |+.++..+++|.|||..|-
T Consensus        97 nehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   97 NEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhhc
Confidence            57999999999999999999999998 8999999999999998873

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=4.7e-16  Score=130.79  Aligned_cols=89  Identities=33%  Similarity=0.547  Sum_probs=63.3

Q ss_pred             HHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccc
Q psy2733         212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKT  291 (644)
Q Consensus       212 Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~  291 (644)
                      ||+|++.|+.+++++|++. +.+++.    |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++    
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGN----   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTH----
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCC----
Confidence            5777777777777777775 555555    6777777777777777777777777777777777777777777766    


Q ss_pred             cccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCC
Q psy2733         292 PITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLEN  336 (644)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n  336 (644)
                                                 .+++++|+++|++++.+|
T Consensus        72 ---------------------------~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   72 ---------------------------LEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             ---------------------------HHHHHHHHHTTT-TTSS-
T ss_pred             ---------------------------HHHHHHHHHcCCCCCCcC
Confidence                                       567777777777777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676|consensus

Probab=99.65  E-value=6.9e-16  Score=168.36  Aligned_cols=188  Identities=24%  Similarity=0.299  Sum_probs=151.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCC--------CCCccccCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCccCCcC---C
Q psy2733         140 DTPMHDAVAKGFEEIQLLLLSHP--------EVNLYLENSKGFNILNYAVLR---GNMKVTEKILALNRNLATVPK---T  205 (644)
Q Consensus       140 ~TpL~~A~~~g~~~iv~~Ll~~~--------~~~~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~---d  205 (644)
                      +.++..|...+..+....|+...        ..+++.+..-|.|.||.|..+   ++.++++.|++..+...+..-   .
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            36777788888777777776632        256777778899999999974   456889999987765543221   2


Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcCCCcccC---------C--------------CCCCCHHHHHHHcCCHHHHHHHH
Q psy2733         206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINAL---------D--------------LKKRTPLMAAVGQGQTSVINYLM  262 (644)
Q Consensus       206 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~---------d--------------~~G~TpL~~Aa~~g~~~iv~~Ll  262 (644)
                      -.|.||||+|+.+.+.++|++|++. |+|++++         |              ..|..||-+||.-++.+++++|+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            3589999999999999999999998 8988653         1              24789999999999999999999


Q ss_pred             HCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCC--CCCCCCCCC
Q psy2733         263 LRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAP--LSLENNNRQ  340 (644)
Q Consensus       263 ~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gad--i~~~n~~G~  340 (644)
                      ++|||++++|.+|+|.||+.+..-.                               .++..+++++|++  ..++|+.|.
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~-------------------------------~~My~~~L~~ga~~l~~v~N~qgL  309 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFV-------------------------------TEMYDLALELGANALEHVRNNQGL  309 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHH-------------------------------HHHHHHHHhcCCCccccccccCCC
Confidence            9999999999999999999998743                               6789999999999  899999999


Q ss_pred             CcchhhhcCCc--HHHHHHHH
Q psy2733         341 KPLDLILEDTS--LLNEIMEH  359 (644)
Q Consensus       341 TpL~~A~~~~~--~~~~l~~~  359 (644)
                      |||.+|++-++  +.+.+++.
T Consensus       310 TPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  310 TPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             ChHHHHHHhhhHHHHHHHHHh
Confidence            99999996543  34444444

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=2.2e-15  Score=126.65  Aligned_cols=89  Identities=29%  Similarity=0.459  Sum_probs=78.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHH
Q psy2733         177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTS  256 (644)
Q Consensus       177 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~  256 (644)
                      ||+|+..|+.++++.|++.+.+...      |.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLEN-GADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHh-cccccccCCCCCCHHHHHHHcCCHH
Confidence            7899999999999999997765432      78999999999999999999998 8999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccc
Q psy2733         257 VINYLMLRDVALDIQD  272 (644)
Q Consensus       257 iv~~Ll~~gadvn~~d  272 (644)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            9999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676|consensus

Probab=99.59  E-value=2.1e-14  Score=156.99  Aligned_cols=211  Identities=19%  Similarity=0.226  Sum_probs=148.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCC---------CCCcccCCCCCcHHHHHHh---cCCHHHHHHHhhccCCCccchhhhhhh
Q psy2733           2 TLLHILAYQGCVEELNILLARG---------ACVYYPDDAGDTALHYAAF---GNKPDAIQINSHVSGANRSRKHIYKER   69 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~G---------a~~n~~d~~G~TpLh~Aa~---~g~~eiv~lL~~~a~~~~~~~~~~~~~   69 (644)
                      .++..|...|.++....|+..+         .+++.+...|+|.||.|..   .++.++++.|.+.+.--.         
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~li---------  173 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLI---------  173 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHh---------
Confidence            4677888888998888888776         6888899999999999997   445678877622211000         


Q ss_pred             hhccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHH
Q psy2733          70 HRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVN-IQDNNQDTPMHDAVA  148 (644)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n-~~d~~G~TpL~~A~~  148 (644)
                                                                               .   |+- .....|.||||+|+.
T Consensus       174 ---------------------------------------------------------n---d~~~~eeY~GqSaLHiAIv  193 (782)
T KOG3676|consen  174 ---------------------------------------------------------N---DIYTSEEYYGQSALHIAIV  193 (782)
T ss_pred             ---------------------------------------------------------h---hhhhhHhhcCcchHHHHHH
Confidence                                                                     0   000 112357777777777


Q ss_pred             cCCHHHHHHHhcCCCCCcccc---------C--------------CCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCC
Q psy2733         149 KGFEEIQLLLLSHPEVNLYLE---------N--------------SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKT  205 (644)
Q Consensus       149 ~g~~~iv~~Ll~~~~~~~~~~---------d--------------~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d  205 (644)
                      +.+.++|++|++ .|+|++.+         |              ..|..||-+|+-.++.+++++|++++++++.  +|
T Consensus       194 ~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a--qD  270 (782)
T KOG3676|consen  194 NRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA--QD  270 (782)
T ss_pred             hccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc--cc
Confidence            777777777777 67776543         1              1356788888888888888888887777766  67


Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHHC-C-------------CCCC
Q psy2733         206 SDGFTPLHVACFNDHIEIVELLVEKYKVN--INALDLKKRTPLMAAVGQGQTSVINYLMLR-D-------------VALD  269 (644)
Q Consensus       206 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~--in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~-g-------------advn  269 (644)
                      +.|+|.||..+..-..++..++++. |++  ...+|..|.|||.+|+.-|..++.+.+++. .             .+.+
T Consensus       271 S~GNTVLH~lVi~~~~~My~~~L~~-ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~  349 (782)
T KOG3676|consen  271 SNGNTVLHMLVIHFVTEMYDLALEL-GANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLN  349 (782)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHhc-CCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccch
Confidence            7888888888777777777888877 566  677778888888888888888888888766 1             2334


Q ss_pred             cccC--CCCcHHHHHHHc
Q psy2733         270 IQDI--DGNGLLHFLFIK  285 (644)
Q Consensus       270 ~~d~--~G~T~Lh~A~~~  285 (644)
                      ..|.  +.+++|.+.+..
T Consensus       350 ~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  350 SIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             hcccccchhhhhhhhhcC
Confidence            4443  456677776654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.58  E-value=4.7e-14  Score=125.32  Aligned_cols=114  Identities=33%  Similarity=0.502  Sum_probs=63.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHH
Q psy2733         171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV  250 (644)
Q Consensus       171 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa  250 (644)
                      ..|.||||+|+..++.++++.|++.+.....  .+..|.||||.|+..++.+++++|++. +.+++..+..|.||+|+|+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~--~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc--cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHH
Confidence            4455555555555555555555555544311  334555556666555555556655555 4455555555666666666


Q ss_pred             HcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         251 GQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       251 ~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      ..++.+++++|+++|.+++..+..|.||+++|...++
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  118 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH  118 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC
Confidence            6666666666666665555566666666666655544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.57  E-value=5.4e-14  Score=124.91  Aligned_cols=125  Identities=30%  Similarity=0.513  Sum_probs=114.0

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHH
Q psy2733         134 IQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLH  213 (644)
Q Consensus       134 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh  213 (644)
                      ..|.+|.||||+|+..|+.+++++|++ .+.+.+..+..|.+|||+|+..++.++++.|+..+.....  .+..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA--RDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc--cCCCCCCHHH
Confidence            356789999999999999999999999 6877788999999999999999999999999999875443  4478899999


Q ss_pred             HHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2733         214 VACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM  262 (644)
Q Consensus       214 ~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll  262 (644)
                      +|+..++.+++++|++. +.+++..|..|.||+++|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999998 7889999999999999999999999999884

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.44  E-value=3.7e-13  Score=108.27  Aligned_cols=98  Identities=27%  Similarity=0.383  Sum_probs=49.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHH
Q psy2733         177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTS  256 (644)
Q Consensus       177 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~  256 (644)
                      +.|++.+|..+-|+..+..+-+++.  . -.|++|||+|+..|+.+++++|+.. |++++.+|+.|.|||..|+..||.+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~--~-~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNE--I-YGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHH--H-hCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHHHHHHHhhHH
Confidence            4455555555555555544432222  1 2445555555555555555555554 4555555555555555555555555


Q ss_pred             HHHHHHHCCCCCCcccCCCCcH
Q psy2733         257 VINYLMLRDVALDIQDIDGNGL  278 (644)
Q Consensus       257 iv~~Ll~~gadvn~~d~~G~T~  278 (644)
                      +|++|+++|+|-..+..+|.+.
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~  103 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTAL  103 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhH
Confidence            5555555555554444444443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=4e-12  Score=125.21  Aligned_cols=119  Identities=27%  Similarity=0.319  Sum_probs=82.1

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCc-----HHHHHHHHHhcCC---Cccc
Q psy2733         166 LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH-----IEIVELLVEKYKV---NINA  237 (644)
Q Consensus       166 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~-----~~~v~~Ll~~~g~---~in~  237 (644)
                      ....+..+.++++.++..+...+++.++..+.++..  .+..|.||||+|+..++     .++++.|++. |+   ..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~  142 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA--KDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNL  142 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccc--ccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCccc
Confidence            334455566777777777777777677766666533  44667777777777776     7777777776 45   5555


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         238 LDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       238 ~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      +|..|.||||+|+..|+.+++++|++.|++++.++..|.|++++|...++
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~  192 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR  192 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccch
Confidence            57777777777777777777777777777777777777777777777666

>KOG4214|consensus

Probab=99.41  E-value=8.8e-13  Score=106.13  Aligned_cols=105  Identities=21%  Similarity=0.251  Sum_probs=93.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcC
Q psy2733         140 DTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFND  219 (644)
Q Consensus       140 ~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g  219 (644)
                      .-.++|++++|..+-|+..+. .|.++|..- .|++|||+|+-.|..+++++|+..|+++..  +|+.|-|||..|+..|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~-~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~--kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVN-EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQD--KDKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHH-ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCC--ccccCCcHHHHHHHHh
Confidence            346789999999999998888 677887655 899999999999999999999999998876  7789999999999999


Q ss_pred             cHHHHHHHHHhcCCCcccCCCCCCCHHHHH
Q psy2733         220 HIEIVELLVEKYKVNINALDLKKRTPLMAA  249 (644)
Q Consensus       220 ~~~~v~~Ll~~~g~~in~~d~~G~TpL~~A  249 (644)
                      +.++|++|+.+ |++-.....+|.+.+..+
T Consensus        79 H~~cVklLL~~-GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   79 HRDCVKLLLQN-GADRTIHAPDGTALIEAT  107 (117)
T ss_pred             hHHHHHHHHHc-CcccceeCCCchhHHhhc
Confidence            99999999999 899988888998776544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.40  E-value=2.8e-12  Score=126.27  Aligned_cols=132  Identities=29%  Similarity=0.444  Sum_probs=121.0

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCC-----HHHHHHHHHhcC--CccCCc
Q psy2733         131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN-----MKVTEKILALNR--NLATVP  203 (644)
Q Consensus       131 d~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~--~~~~~~  203 (644)
                      .....+..+.++++.++..+..+++++++. .+++++.++..|.||||+|+..++     .++++.|++.++  .... .
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~-~  142 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN-L  142 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHH-cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc-c
Confidence            334556678999999999999999999999 899999999999999999999999     999999999999  3433 3


Q ss_pred             CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q psy2733         204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD  265 (644)
Q Consensus       204 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~g  265 (644)
                      .+..|+||||+|+..|+.+++++|++. |++++.++..|.|++++|+..++.++++.+++.+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            468999999999999999999999998 8999999999999999999999999999999975

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.34  E-value=1.8e-12  Score=97.85  Aligned_cols=52  Identities=37%  Similarity=0.503  Sum_probs=44.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN   52 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL   52 (644)
                      +||||+||+.|+.+++++|++.|++++.+|.+|+||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=6e-12  Score=143.91  Aligned_cols=106  Identities=21%  Similarity=0.180  Sum_probs=91.7

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcc
Q psy2733         210 TPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFY  289 (644)
Q Consensus       210 T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~  289 (644)
                      +.|+.|+..|+.+.+++|++. |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++  
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~--  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF--  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc--
Confidence            458888888999999998887 78899899999999999999999999999999999999999999999999998888  


Q ss_pred             cccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHc-------CCCCCCCCCCCCCcchhhh
Q psy2733         290 KTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKH-------GAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~-------Gadi~~~n~~G~TpL~~A~  347 (644)
                                                   .+++++|+++       |++++..+..|.+|+..+.
T Consensus       161 -----------------------------~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 -----------------------------REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             -----------------------------HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence                                         6788888888       8888888888888876654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.8e-12  Score=98.47  Aligned_cols=56  Identities=30%  Similarity=0.427  Sum_probs=33.7

Q ss_pred             HHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHH
Q psy2733         227 LVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFL  282 (644)
Q Consensus       227 Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A  282 (644)
                      ||+++..+++.+|..|.||||+|+.+|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45663489999999999999999999999999999999999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.30  E-value=9.7e-12  Score=142.21  Aligned_cols=106  Identities=28%  Similarity=0.292  Sum_probs=96.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCC
Q psy2733           3 LLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPS   82 (644)
Q Consensus         3 pLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (644)
                      .||.||..|+.+.+++|++.|+++|.+|..|+||||+|+..|+.+++++                               
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~-------------------------------  133 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRV-------------------------------  133 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHH-------------------------------
Confidence            5899999999999999999999999999999999999999999999987                               


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC-
Q psy2733          83 NLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-  161 (644)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-  161 (644)
                                                                |+++|+++|.+|..|.||||+|+..|+.+++++|+++ 
T Consensus       134 ------------------------------------------LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  171 (664)
T PTZ00322        134 ------------------------------------------LLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHS  171 (664)
T ss_pred             ------------------------------------------HHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCC
Confidence                                                      8888999999999999999999999999999999983 


Q ss_pred             -----CCCCccccCCCCCcHHHHHH
Q psy2733         162 -----PEVNLYLENSKGFNILNYAV  181 (644)
Q Consensus       162 -----~~~~~~~~d~~g~tpL~~A~  181 (644)
                           .+++.+..+..|.+|+..+.
T Consensus       172 ~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        172 QCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CcccccCCCCCccccCCCCccchhh
Confidence                 27777777888888876554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=3.3e-12  Score=97.09  Aligned_cols=55  Identities=25%  Similarity=0.351  Sum_probs=33.1

Q ss_pred             HHHCC-CCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCC
Q psy2733         261 LMLRD-VALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNR  339 (644)
Q Consensus       261 Ll~~g-advn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G  339 (644)
                      |+++| ++++.+|..|+||||+|+..++                               .+++++|+++|++++.+|.+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~-------------------------------~~~v~~Ll~~g~d~~~~d~~G   49 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGH-------------------------------SEVVRLLLQNGADPNAKDKDG   49 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT--------------------------------HHHHHHHHHCT--TT---TTS
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCc-------------------------------HHHHHHHHHCcCCCCCCcCCC
Confidence            67788 9999999999999999999999                               789999999999999999999


Q ss_pred             CCcchhh
Q psy2733         340 QKPLDLI  346 (644)
Q Consensus       340 ~TpL~~A  346 (644)
                      +||||+|
T Consensus        50 ~Tpl~~A   56 (56)
T PF13857_consen   50 QTPLHYA   56 (56)
T ss_dssp             --HHHH-
T ss_pred             CCHHHhC
Confidence            9999997

>KOG1710|consensus

Probab=99.26  E-value=2.8e-11  Score=117.01  Aligned_cols=120  Identities=27%  Similarity=0.265  Sum_probs=108.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      ++||.-|...|+.+.+..||+---++|.+|..|+|+|+.|+..|+.++|++                             
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~l-----------------------------   63 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVEL-----------------------------   63 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHH-----------------------------
Confidence            468999999999999999998766689999999999999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~-~d~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                  |++.|+|+|. ++..++||||+|+..|+.++.++|+
T Consensus        64 --------------------------------------------ll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlll   99 (396)
T KOG1710|consen   64 --------------------------------------------LLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLL   99 (396)
T ss_pred             --------------------------------------------HHHhCCCcCcccccccccHHHHHHHcCCchHHHHHH
Confidence                                                        7777777774 4567999999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILA  194 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  194 (644)
                      + .|+.....+.-|+|+-.+|+.-|+.++|..+-.
T Consensus       100 d-aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  100 D-AGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             h-ccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9 899999999999999999999999999987654

>KOG1710|consensus

Probab=99.23  E-value=4.4e-11  Score=115.70  Aligned_cols=122  Identities=21%  Similarity=0.347  Sum_probs=108.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHh
Q psy2733         138 NQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACF  217 (644)
Q Consensus       138 ~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~  217 (644)
                      ....||.-++..|..+-...||+ .-..+|.+|..|.++|..|+.+|+.++|+.|++.|++++.... ..++||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs-~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh-g~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLS-TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH-GTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHH-HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc-cccccHHHHHHH
Confidence            44578999999999999999998 4556889999999999999999999999999999999877654 789999999999


Q ss_pred             cCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2733         218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM  262 (644)
Q Consensus       218 ~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll  262 (644)
                      .|+.++.++|++. |+.....|.-|+|+-.+|+--|+.++|..+-
T Consensus        89 SGn~dvcrlllda-Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   89 SGNQDVCRLLLDA-GARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             cCCchHHHHHHhc-cCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999998 8999999999999999999999988887664

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.21  E-value=2.7e-11  Score=91.45  Aligned_cols=54  Identities=43%  Similarity=0.657  Sum_probs=43.9

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy2733         208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM  262 (644)
Q Consensus       208 g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll  262 (644)
                      |+||||+|++.|+.+++++|++. |.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67999999999999999999988 8999999999999999999999999999986

...

>KOG4172|consensus

Probab=99.11  E-value=1.4e-12  Score=92.69  Aligned_cols=48  Identities=38%  Similarity=0.863  Sum_probs=42.2

Q ss_pred             CcccccccCCcCeEEe-cCc-ccchhhhhcCC-----CCccccccccceEEEEEe
Q psy2733         479 NTCTICMERCRNTIFL-CGH-GTCDVCAKTLK-----FCHMCRKLIEQRINISRA  526 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH-~~C~~C~~~~~-----~Cp~Cr~~i~~~~~~~~~  526 (644)
                      .+|.||+|.+.+.|+. ||| +.|..|+.++.     .||+||.+|+.+|+.|++
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s   62 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS   62 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence            4599999999999999 999 45999999763     699999999999977763

>KOG0515|consensus

Probab=99.11  E-value=2.4e-10  Score=118.75  Aligned_cols=102  Identities=26%  Similarity=0.305  Sum_probs=87.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHH
Q psy2733         177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTS  256 (644)
Q Consensus       177 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~  256 (644)
                      |.-|+..|-+++|+.++..-.++..  -+.+|-|+||-|+..|+++||++|++. |+++|..|.+||||||.||..+++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSq--pNdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQ--PNDEGITALHNAICAGHYEIVKFLIEF-GANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCC--CCccchhHHhhhhhcchhHHHHHHHhc-CCcccCccCCCCchhhhhhhcCchH
Confidence            3448889999999999876655543  457899999999999999999999998 8999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccc-CCCCcHHHH
Q psy2733         257 VINYLMLRDVALDIQD-IDGNGLLHF  281 (644)
Q Consensus       257 iv~~Ll~~gadvn~~d-~~G~T~Lh~  281 (644)
                      +++.|++.|+-|-+.. .++.|+..-
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEK  656 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhh
Confidence            9999999998875543 677777654

>KOG0515|consensus

Probab=99.11  E-value=2.2e-10  Score=119.02  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCch
Q psy2733         131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFT  210 (644)
Q Consensus       131 d~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T  210 (644)
                      |+...+..|-|+||.|+..||.+||++|++ .|+++|..|.+||||||.|+..++..+++.|++.|+.+....- +++.|
T Consensus       575 DpSqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTl-SDmeT  652 (752)
T KOG0515|consen  575 DPSQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTL-SDMET  652 (752)
T ss_pred             CCCCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeec-ccccc
Confidence            334445567777777777777777777777 6777777777777777777777777777777777766655444 56667


Q ss_pred             HHHHHH--hcCcHHHHHHHHH
Q psy2733         211 PLHVAC--FNDHIEIVELLVE  229 (644)
Q Consensus       211 ~Lh~A~--~~g~~~~v~~Ll~  229 (644)
                      +....-  +.|...+.++|..
T Consensus       653 a~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  653 AAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhhcchhhhhHHHHHHHHHH
Confidence            665542  4567777777764

>KOG4275|consensus

Probab=98.96  E-value=1.1e-10  Score=112.64  Aligned_cols=49  Identities=41%  Similarity=0.939  Sum_probs=45.4

Q ss_pred             cCcccccccCCcCeEEe-cCc-ccchhhhhcCCCCccccccccceEEEEEe
Q psy2733         478 MNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINISRA  526 (644)
Q Consensus       478 ~~~C~iC~~~~~~~~~~-CgH-~~C~~C~~~~~~Cp~Cr~~i~~~~~~~~~  526 (644)
                      ...|.||||.+++.+|+ ||| +.|..|.++|..||+||+.|.+.+++|++
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV  350 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence            57899999999999999 999 55999999999999999999999988763

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.85  E-value=9.4e-10  Score=81.34  Aligned_cols=43  Identities=44%  Similarity=0.976  Sum_probs=36.9

Q ss_pred             cCcccccccCCcCeEEe-cCcc-cchhhhhcC----CCCccccccccce
Q psy2733         478 MNTCTICMERCRNTIFL-CGHG-TCDVCAKTL----KFCHMCRKLIEQR  520 (644)
Q Consensus       478 ~~~C~iC~~~~~~~~~~-CgH~-~C~~C~~~~----~~Cp~Cr~~i~~~  520 (644)
                      +..|.||++.+.++++. |||. +|..|+.++    .+||+||++|+++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            45799999999999999 9996 899999976    7999999999853

...

>KOG0783|consensus

Probab=98.68  E-value=7.2e-09  Score=113.01  Aligned_cols=79  Identities=25%  Similarity=0.342  Sum_probs=38.3

Q ss_pred             CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHH
Q psy2733         204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFL  282 (644)
Q Consensus       204 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d-~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A  282 (644)
                      .|..|+|+||+|+..+...++++|+.+ |++++.+| ..|+||||.|+.+|+.+++-+|+++|+.+.++|++|..||.+.
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~  126 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFL  126 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHH
Confidence            334444555554444444445554444 44444444 2344555555555555554444444444444444444444444


Q ss_pred             H
Q psy2733         283 F  283 (644)
Q Consensus       283 ~  283 (644)
                      +
T Consensus       127 ~  127 (1267)
T KOG0783|consen  127 S  127 (1267)
T ss_pred             h
Confidence            3

>KOG0783|consensus

Probab=98.61  E-value=5e-08  Score=106.59  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=84.1

Q ss_pred             HHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCC
Q psy2733         154 IQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKV  233 (644)
Q Consensus       154 iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~  233 (644)
                      +-.++-++.+--.+++|..|+|+||+|+..+..+++++|+++|.++..... ..|+||||.|+..|+.+++.+||++ |+
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~-ESG~taLHRaiyyG~idca~lLL~~-g~  110 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDE-ESGYTALHRAIYYGNIDCASLLLSK-GR  110 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccc-cccchHhhHhhhhchHHHHHHHHhc-CC
Confidence            334444444445789999999999999999999999999999998876544 7899999999999999999999998 89


Q ss_pred             CcccCCCCCCCHHHHHHHc
Q psy2733         234 NINALDLKKRTPLMAAVGQ  252 (644)
Q Consensus       234 ~in~~d~~G~TpL~~Aa~~  252 (644)
                      ....+|..|..||..-++-
T Consensus       111 SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  111 SLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             ceEEecccCCCHHHHHhhc
Confidence            9999999999999887763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.51  E-value=1.4e-07  Score=61.44  Aligned_cols=30  Identities=23%  Similarity=0.496  Sum_probs=25.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Q psy2733         241 KKRTPLMAAVGQGQTSVINYLMLRDVALDI  270 (644)
Q Consensus       241 ~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~  270 (644)
                      +|+||||+|++.|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            488899999999999999999998888873

>PF13606 Ank_3: Ankyrin repeat

Probab=98.51  E-value=1.2e-07  Score=61.63  Aligned_cols=28  Identities=39%  Similarity=0.462  Sum_probs=26.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYY   28 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~   28 (644)
                      |||||+||+.|+.++|++||++|+|+|.
T Consensus         3 ~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    3 NTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            7999999999999999999999999873

>KOG0818|consensus

Probab=98.49  E-value=4e-07  Score=94.52  Aligned_cols=84  Identities=29%  Similarity=0.304  Sum_probs=70.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCcccCCC-CCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCC
Q psy2733           4 LHILAYQGCVEELNILLARGACVYYPDDA-GDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPS   82 (644)
Q Consensus         4 Lh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~-G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (644)
                      ||..++.|+++..-.||..||++|..+.+ |.||||.|++.|+..=+++                               
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~El-------------------------------  185 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAEL-------------------------------  185 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhH-------------------------------
Confidence            78888999999988899999998887754 8899999998887655544                               


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          83 NLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                |+-+|+|++..|.+|.||+.+|-..||-++.+.|++
T Consensus       186 ------------------------------------------L~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  186 ------------------------------------------LAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             ------------------------------------------HhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence                                                      677888888889999999999999998888888776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.49  E-value=1.9e-07  Score=62.47  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Q psy2733         241 KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDI  273 (644)
Q Consensus       241 ~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~  273 (644)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            488999999999999999999999999888774

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG4265|consensus

Probab=98.48  E-value=3.7e-08  Score=99.39  Aligned_cols=50  Identities=40%  Similarity=0.863  Sum_probs=42.7

Q ss_pred             hhcCcccccccCCcCeEEe-cCc-ccchhhhhcC----CCCccccccccceEEEEE
Q psy2733         476 EEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTL----KFCHMCRKLIEQRINISR  525 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~-CgH-~~C~~C~~~~----~~Cp~Cr~~i~~~~~~~~  525 (644)
                      +....|+||++..++++.+ |+| +.|.+|++.+    .+||+||++|...+.++.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            3346799999999999999 999 6699999965    369999999998776654

>KOG0506|consensus

Probab=98.45  E-value=2.3e-07  Score=95.95  Aligned_cols=96  Identities=27%  Similarity=0.327  Sum_probs=85.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHH
Q psy2733         170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAA  249 (644)
Q Consensus       170 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~A  249 (644)
                      +.++..++++|+..|.+..++.+.-.+.++..  .|-+.+|+||.|+..|+++++++|++..+++++.+|.+|+|||.-|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~--~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLET--KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccc--cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            45677889999999999999999888887765  6678899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCC
Q psy2733         250 VGQGQTSVINYLMLRDVA  267 (644)
Q Consensus       250 a~~g~~~iv~~Ll~~gad  267 (644)
                      ...+|.+++++|-+....
T Consensus       581 ~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             HhcCcHHHHHHHHHHhcc
Confidence            999999999999876543

>KOG0818|consensus

Probab=98.45  E-value=6.7e-07  Score=92.91  Aligned_cols=95  Identities=25%  Similarity=0.272  Sum_probs=83.6

Q ss_pred             ccCCCCCcH------HHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCC
Q psy2733         168 LENSKGFNI------LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK  241 (644)
Q Consensus       168 ~~d~~g~tp------L~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~  241 (644)
                      -+|.+|.+.      ||..++.|+.+..-.||..|++.+.... ..|.||||.|++.|+..-+++|+-. |+|++..|.+
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hp-ekg~TpLHvAAk~Gq~~Q~ElL~vY-GAD~~a~d~~  199 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHP-EKGNTPLHVAAKAGQILQAELLAVY-GADPGAQDSS  199 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCc-ccCCchhHHHHhccchhhhhHHhhc-cCCCCCCCCC
Confidence            445555544      8999999999999999999999887766 7899999999999999999999887 8999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHC
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLR  264 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~  264 (644)
                      |+||+.+|-..||-++.+.|++.
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHH
Confidence            99999999999998888877754

>KOG0320|consensus

Probab=98.42  E-value=6.9e-08  Score=87.57  Aligned_cols=49  Identities=31%  Similarity=0.800  Sum_probs=40.3

Q ss_pred             CcccccccCCcCeE-E-e-cCcccchhhhhcC----CCCccccccccceEEEEEeee
Q psy2733         479 NTCTICMERCRNTI-F-L-CGHGTCDVCAKTL----KFCHMCRKLIEQRINISRAFV  528 (644)
Q Consensus       479 ~~C~iC~~~~~~~~-~-~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~~~~~~~~~~  528 (644)
                      ..|+|||+.....+ + . |||+||..|++..    .+||+||+.|+.+. +|+.|+
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~-~~rI~L  187 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ-FHRIYL  187 (187)
T ss_pred             cCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhh-heeccC
Confidence            67999999988866 5 5 9999999999953    58999999998764 556554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.40  E-value=3.7e-07  Score=61.00  Aligned_cols=31  Identities=32%  Similarity=0.428  Sum_probs=29.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDD   31 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~   31 (644)
                      +||||+|+..|+.+++++|+++|++++.+|.
T Consensus         3 ~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    3 NTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             BBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            5999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.34  E-value=3.2e-07  Score=67.75  Aligned_cols=43  Identities=47%  Similarity=0.994  Sum_probs=36.7

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.. ..+.+.||||.+.|..|..++    ++||+||++|++
T Consensus         3 ~~C~iC~~~~-~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    3 EECPICFENP-RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             SB-TTTSSSB-SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             CCCccCCccC-CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            3599999997 677888999999999999998    699999999976

...

>KOG1571|consensus

Probab=98.31  E-value=1.1e-07  Score=95.97  Aligned_cols=47  Identities=32%  Similarity=0.880  Sum_probs=43.8

Q ss_pred             CcccccccCCcCeEEe-cCc-ccchhhhhcCCCCccccccccceEEEEE
Q psy2733         479 NTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINISR  525 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH-~~C~~C~~~~~~Cp~Cr~~i~~~~~~~~  525 (644)
                      ..|.||.+++.+.+|. ||| ++|..|++.+.+||+||+.|...+++|+
T Consensus       306 ~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~  354 (355)
T KOG1571|consen  306 DLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR  354 (355)
T ss_pred             CceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence            6899999999999999 999 6699999999999999999999887775

>KOG0506|consensus

Probab=98.31  E-value=6.8e-07  Score=92.50  Aligned_cols=81  Identities=21%  Similarity=0.242  Sum_probs=75.5

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCcHHHHHHH
Q psy2733         206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR-DVALDIQDIDGNGLLHFLFI  284 (644)
Q Consensus       206 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~-gadvn~~d~~G~T~Lh~A~~  284 (644)
                      .++...+++|++.|....++.+.-. |.|++.+|.+.+|+||.||..|+++++++|++. +.+++.+|..|+|||.-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            5567889999999999999888776 899999999999999999999999999999976 89999999999999999998


Q ss_pred             cCC
Q psy2733         285 KKN  287 (644)
Q Consensus       285 ~~~  287 (644)
                      .++
T Consensus       583 F~h  585 (622)
T KOG0506|consen  583 FKH  585 (622)
T ss_pred             cCc
Confidence            888

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.24  E-value=6.5e-07  Score=83.82  Aligned_cols=74  Identities=19%  Similarity=0.390  Sum_probs=52.1

Q ss_pred             hhhhcCcccccccCCcCeEEe-cCcccchhhhhc--------------------CCCCccccccccc--eEEEEEeeecC
Q psy2733         474 EIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT--------------------LKFCHMCRKLIEQ--RINISRAFVSP  530 (644)
Q Consensus       474 ~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~--------------------~~~Cp~Cr~~i~~--~~~~~~~~~~~  530 (644)
                      +..++..|.||++...+.+.+ |||.+|..|...                    ..+||+||.+|+.  .+.+|-..-+.
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~~~   93 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQKA   93 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCCCC
Confidence            344568899999999999999 999999999963                    1379999999977  45555444444


Q ss_pred             CCCCCCCCCccceEEEE
Q psy2733         531 DQNGNTTSNTMFHIRIQ  547 (644)
Q Consensus       531 ~~~~~~~~~~~~~~~~~  547 (644)
                      .+-+.+.+.---+.+.+
T Consensus        94 ~~~~~~iP~rp~~~~~~  110 (193)
T PLN03208         94 PQSGSNVPSRPSGPVYD  110 (193)
T ss_pred             CCCCCCCCcCCCCCccC
Confidence            44444444433344433

>KOG0782|consensus

Probab=98.21  E-value=3.7e-06  Score=88.53  Aligned_cols=100  Identities=24%  Similarity=0.306  Sum_probs=67.4

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCC
Q psy2733         163 EVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK  242 (644)
Q Consensus       163 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G  242 (644)
                      |.++-.++.+..+.||+|+..|+-++|+++|++++.......|..|.|+||.|+..++..+.++|++. |+.+...|..|
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda-gasl~ktd~kg  967 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA-GASLRKTDSKG  967 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc-chhheecccCC
Confidence            44555666666777777777777777777777766544333446677777777777777777777766 66666677777


Q ss_pred             CCHHHHHHHcCCHHHHHHHHH
Q psy2733         243 RTPLMAAVGQGQTSVINYLML  263 (644)
Q Consensus       243 ~TpL~~Aa~~g~~~iv~~Ll~  263 (644)
                      .||-..|-+.|..++.-+|-.
T Consensus       968 ~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  968 KTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             CChHHHHHhcCCchHHHHHhh
Confidence            777777777777777666653

>KOG0522|consensus

Probab=98.20  E-value=3.1e-06  Score=89.29  Aligned_cols=87  Identities=22%  Similarity=0.335  Sum_probs=46.4

Q ss_pred             HHHHHHHcCCHHHHHH-HhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCc
Q psy2733         142 PMHDAVAKGFEEIQLL-LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH  220 (644)
Q Consensus       142 pL~~A~~~g~~~iv~~-Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~  220 (644)
                      |+|+++.....+-+.. |.......++.+|..|.||||+|+..|+.+.++.|+..+++...  ++..||+|||.|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~--kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSI--KNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccc--cccccccHHHHHHHcCC
Confidence            3566655554333322 22223444555555566666666666666666666655555433  44556666666666666


Q ss_pred             HHHHHHHHHh
Q psy2733         221 IEIVELLVEK  230 (644)
Q Consensus       221 ~~~v~~Ll~~  230 (644)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>KOG0782|consensus

Probab=98.18  E-value=4.4e-06  Score=88.02  Aligned_cols=109  Identities=19%  Similarity=0.152  Sum_probs=88.4

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCH
Q psy2733         177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN-INALDLKKRTPLMAAVGQGQT  255 (644)
Q Consensus       177 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~-in~~d~~G~TpL~~Aa~~g~~  255 (644)
                      +..|+..+.+--++.....|.....  ++.+..+.||+|+..|+-++|+++|++...+ +++.|..|.|+||.|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~--~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLI--QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEe--eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            3445555554444444444544433  5577899999999999999999999985433 477889999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       256 ~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .+.++|++.|+.+...|..|.||-..|-..++
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d  979 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGD  979 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCC
Confidence            99999999999999999999999999998888

>KOG0705|consensus

Probab=98.18  E-value=4.5e-06  Score=88.46  Aligned_cols=91  Identities=25%  Similarity=0.263  Sum_probs=72.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCcc--CCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC
Q psy2733         177 LNYAVLRGNMKVTEKILALNRNLA--TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ  254 (644)
Q Consensus       177 L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~  254 (644)
                      |..|+...++..+-+||.+|....  ....+.+|.|+||+|++.|++.+.++|+=+ |+|+-.+|..|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhhccc
Confidence            556777777778888888876532  223346788999999999999988888866 88999999999999999999999


Q ss_pred             HHHHHHHHHCCCCC
Q psy2733         255 TSVINYLMLRDVAL  268 (644)
Q Consensus       255 ~~iv~~Ll~~gadv  268 (644)
                      .+++..|+.+|+.-
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999888763

>KOG4172|consensus

Probab=98.16  E-value=1.5e-07  Score=67.33  Aligned_cols=46  Identities=35%  Similarity=0.767  Sum_probs=41.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhh-----hhhccccceeeeee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMK-----KCIMCKTFIEMRVT  445 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-----~Cp~Cr~~i~~~~~  445 (644)
                      .||.||.+.++..|++ -|||++.|.+|.-+++     .||+||++|...|+
T Consensus         8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIk   58 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIK   58 (62)
T ss_pred             cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHH
Confidence            6899999999888777 9999999999998887     59999999987664

>KOG0705|consensus

Probab=98.15  E-value=5.4e-06  Score=87.87  Aligned_cols=90  Identities=21%  Similarity=0.219  Sum_probs=75.8

Q ss_pred             HHHHHhcCcHHHHHHHHHhcC---CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCc
Q psy2733         212 LHVACFNDHIEIVELLVEKYK---VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNF  288 (644)
Q Consensus       212 Lh~A~~~g~~~~v~~Ll~~~g---~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~  288 (644)
                      |..|+...+...+-+||.++.   .+-...+.+|+|+||+|++.|++.+.++|+=+|+|+.++|.+|+|+|.||-..+. 
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s-  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS-  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc-
Confidence            566777777888888887621   2223455778999999999999999999999999999999999999999999888 


Q ss_pred             ccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCC
Q psy2733         289 YKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPL  332 (644)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi  332 (644)
                                                    -+++..|+.+|...
T Consensus       707 ------------------------------qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 ------------------------------QECIDVLLQYGCPD  720 (749)
T ss_pred             ------------------------------HHHHHHHHHcCCCc
Confidence                                          67999999999653

>KOG0522|consensus

Probab=98.13  E-value=6.1e-06  Score=87.18  Aligned_cols=78  Identities=28%  Similarity=0.328  Sum_probs=46.5

Q ss_pred             HHHHHHhcCcHHHHHH-HHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCc
Q psy2733         211 PLHVACFNDHIEIVEL-LVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNF  288 (644)
Q Consensus       211 ~Lh~A~~~g~~~~v~~-Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~  288 (644)
                      |||+++.....+-+.. |.......++.+|..|.||||+|+..|+...++.|+..|+++..+|++|+++||-|+..|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            4666655554443333 22222345666666666666666666666666666666666666666666666666666663

>KOG4265|consensus

Probab=98.08  E-value=1.2e-06  Score=88.68  Aligned_cols=48  Identities=25%  Similarity=0.724  Sum_probs=41.0

Q ss_pred             ccccccccccccceEEecCCCccccchhhHHHhh----hhhccccceeeeeec
Q psy2733         398 PVECAVCSELGVANVLLKPCNHAVACEECSSRMK----KCIMCKTFIEMRVTT  446 (644)
Q Consensus       398 ~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~~~~~~  446 (644)
                      ..+|+||+... ++.+..||+|++.|++|+..++    +||+||++|++-..+
T Consensus       290 gkeCVIClse~-rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i  341 (349)
T KOG4265|consen  290 GKECVICLSES-RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI  341 (349)
T ss_pred             CCeeEEEecCC-cceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence            46899999998 5556669999999999999987    699999999885543

>KOG3609|consensus

Probab=98.00  E-value=1.8e-05  Score=88.42  Aligned_cols=124  Identities=19%  Similarity=0.175  Sum_probs=95.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCC---CCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHH
Q psy2733         138 NQDTPMHDAVAKGFEEIQLLLLSHPE---VNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHV  214 (644)
Q Consensus       138 ~G~TpL~~A~~~g~~~iv~~Ll~~~~---~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~  214 (644)
                      .+.--...|+.+|+...|+..++...   .++|-.|.-|.++|+.|+.+.+.+++++|++..-..         ..+|.+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---------gdALL~   94 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---------GDALLL   94 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc---------chHHHH
Confidence            34445677889999888888777432   456777888999999999999999999998865332         467888


Q ss_pred             HHhcCcHHHHHHHHHhcCCC---------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Q psy2733         215 ACFNDHIEIVELLVEKYKVN---------INALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI  270 (644)
Q Consensus       215 A~~~g~~~~v~~Ll~~~g~~---------in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~  270 (644)
                      |+..|.+++|+.++.+....         -...-..+.|||++||..++.+|+++|+++|+.+..
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            99999999999998863111         012234578999999999999999999999998755

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.99  E-value=3.3e-06  Score=58.71  Aligned_cols=33  Identities=33%  Similarity=1.023  Sum_probs=27.0

Q ss_pred             ccccccCCcCe-EEe-cCcccchhhhhc----CCCCccc
Q psy2733         481 CTICMERCRNT-IFL-CGHGTCDVCAKT----LKFCHMC  513 (644)
Q Consensus       481 C~iC~~~~~~~-~~~-CgH~~C~~C~~~----~~~Cp~C  513 (644)
                      |+||++...+. ++. |||.+|.+|+.+    ..+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999 567 999999999984    3689987

>KOG0978|consensus

Probab=97.96  E-value=2.1e-06  Score=95.04  Aligned_cols=55  Identities=24%  Similarity=0.672  Sum_probs=47.8

Q ss_pred             HHHHHHhhhhhhhcCcccccccCCcCeEEe-cCcccchhhhh-----cCCCCccccccccc
Q psy2733         465 VNYLESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAK-----TLKFCHMCRKLIEQ  519 (644)
Q Consensus       465 ~~~l~~~~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~-----~~~~Cp~Cr~~i~~  519 (644)
                      ...|.+++...+.-..|++|.++++++|+. |||+||..|..     +.++||.|..++..
T Consensus       630 d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  630 DEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             cHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            355667777777778999999999999999 99999999998     45899999998775

>KOG2164|consensus

Probab=97.95  E-value=5.3e-06  Score=87.58  Aligned_cols=43  Identities=30%  Similarity=0.631  Sum_probs=38.3

Q ss_pred             cCcccccccCCcCeEEe-cCcccchhhhhc---------CCCCccccccccce
Q psy2733         478 MNTCTICMERCRNTIFL-CGHGTCDVCAKT---------LKFCHMCRKLIEQR  520 (644)
Q Consensus       478 ~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~---------~~~Cp~Cr~~i~~~  520 (644)
                      ...|+||++.+.-.+.+ |||.||..|.-.         ...||+||..|..+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            56899999999999999 999999999772         35899999999974

>KOG1100|consensus

Probab=97.95  E-value=4.8e-06  Score=80.45  Aligned_cols=118  Identities=19%  Similarity=0.384  Sum_probs=73.6

Q ss_pred             cccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeeecCCCccCCCcccchhHHHHHHHHHHhhhhhhhcCc
Q psy2733         401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEMNT  480 (644)
Q Consensus       401 C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  480 (644)
                      +.++.+.. .-.-..++++..+++.+......|+.|. .+.... -.+....+.........   ..-..+...+.....
T Consensus        87 ~~~~~e~~-~w~~~a~~ne~~~~~l~~nl~q~~~~~~-~~~~~~-~~~~~~~g~~~~~~~~s---~~~~~~~~~~~~~~~  160 (207)
T KOG1100|consen   87 KSLYVEAQ-IWRDRAQTNEATVNSLRTNLDQVLAQCP-ASAPAE-ERGQKSCGDREADDGKS---SYVDPSVDNFKRMRS  160 (207)
T ss_pred             hhhhhhHH-HHHHHHHhChHHHHHHHHHHHHHHHhcc-cccCch-hhhccccCccccccccc---cccchhhhhhhcccc
Confidence            55555543 2223337888889999999999999981 111111 11111222211111000   111112223233344


Q ss_pred             ccccccCCcCeEEe-cCc-ccchhhhhcCCCCccccccccceEEEE
Q psy2733         481 CTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINIS  524 (644)
Q Consensus       481 C~iC~~~~~~~~~~-CgH-~~C~~C~~~~~~Cp~Cr~~i~~~~~~~  524 (644)
                      |..|.++...++++ |.| +.|..|....+.||+|+.++...+.+|
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~  206 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN  206 (207)
T ss_pred             ceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence            99999999999999 999 779999999999999999999988665

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.95  E-value=4.4e-06  Score=59.75  Aligned_cols=36  Identities=47%  Similarity=1.089  Sum_probs=30.2

Q ss_pred             cccccccCC---cCeEEe-cCcccchhhhhcCC----CCccccc
Q psy2733         480 TCTICMERC---RNTIFL-CGHGTCDVCAKTLK----FCHMCRK  515 (644)
Q Consensus       480 ~C~iC~~~~---~~~~~~-CgH~~C~~C~~~~~----~Cp~Cr~  515 (644)
                      .|.||++..   ....++ |||.+|..|+..+.    .||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            388999887   345666 99999999999876    9999985

>KOG0521|consensus

Probab=97.95  E-value=1.4e-05  Score=91.79  Aligned_cols=79  Identities=23%  Similarity=0.337  Sum_probs=71.6

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHH
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILL  319 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (644)
                      ..|.|+||.|+..|...++++|++.|+++|.+|..|+||||.+...|+                               .
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~-------------------------------~  702 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGH-------------------------------T  702 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcc-------------------------------c
Confidence            467899999999999999999999999999999999999999999888                               4


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcchhhhcC
Q psy2733         320 AVFLFLVKHGAPLSLENNNRQKPLDLILED  349 (644)
Q Consensus       320 ~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~  349 (644)
                      ..+..|+++||+.++.+.+|++|+++|.+.
T Consensus       703 ~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  703 SIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             chhhhhccccccccccCccCcchhhHHhhh
Confidence            588889999999999999999999999744

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.93  E-value=6.2e-06  Score=80.85  Aligned_cols=46  Identities=30%  Similarity=0.669  Sum_probs=36.5

Q ss_pred             hhcCcccccccCCcC--------eEEe-cCcccchhhhhc----CCCCccccccccceE
Q psy2733         476 EEMNTCTICMERCRN--------TIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~--------~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~~  521 (644)
                      .++..|+||++...+        .++. |||.||..|...    -..||+||.++...+
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~  230 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVI  230 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEe
Confidence            345689999997543        3566 999999999973    358999999999765

>KOG3609|consensus

Probab=97.93  E-value=3.8e-05  Score=85.83  Aligned_cols=123  Identities=20%  Similarity=0.236  Sum_probs=100.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCC--ccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHH
Q psy2733         173 GFNILNYAVLRGNMKVTEKILALNRN--LATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV  250 (644)
Q Consensus       173 g~tpL~~A~~~g~~~~v~~Ll~~~~~--~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa  250 (644)
                      +.--...|+++|+...|+..++....  .+....|.-|.++|+.|+.+.+.+++++|++. +.++       ..+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSEE-------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC-cccc-------chHHHHHH
Confidence            44557789999999999999987665  55555678899999999999999999999987 3333       35899999


Q ss_pred             HcCCHHHHHHHHHCCCCCC----------cccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHH
Q psy2733         251 GQGQTSVINYLMLRDVALD----------IQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLA  320 (644)
Q Consensus       251 ~~g~~~iv~~Ll~~gadvn----------~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (644)
                      ..|.+++|++++.+.....          ..-.-+-|||.+|+..++                               +|
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nn-------------------------------yE  145 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNN-------------------------------FE  145 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcc-------------------------------hH
Confidence            9999999999998754431          223457899999999998                               77


Q ss_pred             HHHHHHHcCCCCCC
Q psy2733         321 VFLFLVKHGAPLSL  334 (644)
Q Consensus       321 iv~~Ll~~Gadi~~  334 (644)
                      |+++|+++|+.+..
T Consensus       146 il~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  146 ILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHcCCCCCC
Confidence            99999999998754

>PHA02926 zinc finger-like protein; Provisional

Probab=97.85  E-value=4.6e-06  Score=78.78  Aligned_cols=46  Identities=24%  Similarity=0.543  Sum_probs=34.8

Q ss_pred             hhcCcccccccCCc---------CeEEe-cCcccchhhhhcC----------CCCccccccccceE
Q psy2733         476 EEMNTCTICMERCR---------NTIFL-CGHGTCDVCAKTL----------KFCHMCRKLIEQRI  521 (644)
Q Consensus       476 ~~~~~C~iC~~~~~---------~~~~~-CgH~~C~~C~~~~----------~~Cp~Cr~~i~~~~  521 (644)
                      .++.+|.||||...         -.++. |+|.||..|....          +.||+||......+
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~  233 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT  233 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence            44468999998742         24566 9999999999843          24999999988443

>KOG0521|consensus

Probab=97.84  E-value=2.3e-05  Score=89.97  Aligned_cols=82  Identities=35%  Similarity=0.399  Sum_probs=77.7

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHc
Q psy2733         206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIK  285 (644)
Q Consensus       206 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~  285 (644)
                      ..|.|+||.|+..+..-++++|+.. |+++|..|..|+||||.+...|+...+..|+++|++.++.+.+|.++|++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            5688999999999999999999998 899999999999999999999999999999999999999999999999999877


Q ss_pred             CCc
Q psy2733         286 KNF  288 (644)
Q Consensus       286 ~~~  288 (644)
                      .+.
T Consensus       733 ~~~  735 (785)
T KOG0521|consen  733 ANA  735 (785)
T ss_pred             ccc
Confidence            553

>KOG4275|consensus

Probab=97.82  E-value=2.4e-06  Score=83.22  Aligned_cols=47  Identities=30%  Similarity=0.764  Sum_probs=40.6

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeeec
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTT  446 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~~  446 (644)
                      .-|.||+|.+... +|.+|||+++|.+|..+|..||+||+.|.+.+.+
T Consensus       301 ~LC~ICmDaP~DC-vfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvri  347 (350)
T KOG4275|consen  301 RLCAICMDAPRDC-VFLECGHMVTCTKCGKRMNECPICRQYIVRVVRI  347 (350)
T ss_pred             HHHHHHhcCCcce-EEeecCcEEeehhhccccccCchHHHHHHHHHhh
Confidence            4599999999555 5559999999999999999999999999876643

>KOG2384|consensus

Probab=97.77  E-value=7.4e-05  Score=69.08  Aligned_cols=55  Identities=25%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCcHHHHHHHcCC
Q psy2733         233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRD-VALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       233 ~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~g-advn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .++|.+|..|+||||.|+..|+.+.+.+|+.+| +.+...|..|.+++.+|-+.|.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~   58 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGA   58 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcCh
Confidence            567777777777777777777777777777777 7777777777777777777666

>KOG0823|consensus

Probab=97.76  E-value=1.6e-05  Score=75.82  Aligned_cols=52  Identities=21%  Similarity=0.520  Sum_probs=42.9

Q ss_pred             hcCcccccccCCcCeEEe-cCcccchhhhhc-------CCCCccccccccc--eEEEEEeee
Q psy2733         477 EMNTCTICMERCRNTIFL-CGHGTCDVCAKT-------LKFCHMCRKLIEQ--RINISRAFV  528 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-------~~~Cp~Cr~~i~~--~~~~~~~~~  528 (644)
                      ....|-||+|...+.|.+ |||-+|-.|.-.       .+.||+|+..|+.  .|.||---.
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~  107 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS  107 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence            347899999999999999 999999999873       3579999988776  576765444

>KOG2384|consensus

Probab=97.74  E-value=9.6e-05  Score=68.33  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=63.3

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCc
Q psy2733         129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE-VNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNL  199 (644)
Q Consensus       129 gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  199 (644)
                      +.++|.+|..|||++|.|+..|+.+.+.+|+. .| +.+...|..|.+++.+|-+.|..++++.|.+...+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            56889999999999999999999999999999 56 899999999999999999999999999999875543

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.72  E-value=1.6e-05  Score=60.03  Aligned_cols=46  Identities=26%  Similarity=0.689  Sum_probs=26.6

Q ss_pred             hhhhhcCcccccccCCcCeEEe--cCcccchhhhhcC--CCCcccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKTL--KFCHMCRKLIE  518 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~--~~Cp~Cr~~i~  518 (644)
                      +++++...|.+|.+-.+..|.+  |.|.||..|+...  ..||+|+.|-.
T Consensus         2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw   51 (65)
T PF14835_consen    2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAW   51 (65)
T ss_dssp             HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S
T ss_pred             hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHH
Confidence            4566677899999999999875  9999999999964  68999998864

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=97.71  E-value=2.1e-05  Score=55.49  Aligned_cols=33  Identities=36%  Similarity=1.014  Sum_probs=25.6

Q ss_pred             ccccccCCcCeEEe-cCcccchhhhhcC--------CCCccc
Q psy2733         481 CTICMERCRNTIFL-CGHGTCDVCAKTL--------KFCHMC  513 (644)
Q Consensus       481 C~iC~~~~~~~~~~-CgH~~C~~C~~~~--------~~Cp~C  513 (644)
                      |+||++-..+.+.+ |||.+|..|..+.        ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999 9999999999843        258887

>KOG0511|consensus

Probab=97.71  E-value=0.00014  Score=73.85  Aligned_cols=75  Identities=29%  Similarity=0.424  Sum_probs=55.5

Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHc
Q psy2733         209 FTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIK  285 (644)
Q Consensus       209 ~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~  285 (644)
                      +.-|-.|++.|..+.|+.|++. |+++|.+|....+||.+|+..||..+|++|+++||--..-..+|.-. ||++.+
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            4557788888888888888885 78888888888888888888888888888888887665444555544 444443

>KOG1571|consensus

Probab=97.63  E-value=1.3e-05  Score=81.25  Aligned_cols=48  Identities=27%  Similarity=0.718  Sum_probs=42.6

Q ss_pred             cccccccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeee
Q psy2733         397 VPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVT  445 (644)
Q Consensus       397 ~~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~  445 (644)
                      .+.-|+||.+.+ .+..+.||||+++|..|.+.+.+||+||..|...++
T Consensus       304 ~p~lcVVcl~e~-~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k  351 (355)
T KOG1571|consen  304 QPDLCVVCLDEP-KSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRK  351 (355)
T ss_pred             CCCceEEecCCc-cceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHH
Confidence            346799999999 668999999999999999999999999999876553

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.60  E-value=2.5e-05  Score=55.92  Aligned_cols=35  Identities=37%  Similarity=0.866  Sum_probs=28.0

Q ss_pred             cccccccCCc---CeEEe-cCcccchhhhhc----CCCCcccc
Q psy2733         480 TCTICMERCR---NTIFL-CGHGTCDVCAKT----LKFCHMCR  514 (644)
Q Consensus       480 ~C~iC~~~~~---~~~~~-CgH~~C~~C~~~----~~~Cp~Cr  514 (644)
                      .|.||++...   .++.+ |||.+|..|...    -..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999998873   46666 999999999884    36999998

...

>KOG0317|consensus

Probab=97.55  E-value=3.3e-05  Score=76.01  Aligned_cols=42  Identities=29%  Similarity=0.684  Sum_probs=37.6

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhc----CCCCccccccccce
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      ..|.+|++...+...+ |||.||-.|+..    -..||+||.+.+..
T Consensus       240 ~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  240 RKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            7899999999999999 999999999884    35799999988764

>KOG0520|consensus

Probab=97.54  E-value=6e-05  Score=86.07  Aligned_cols=130  Identities=17%  Similarity=0.067  Sum_probs=102.0

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHh-cCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCC
Q psy2733         165 NLYLENSKGFNILNYAVLRGNMKVTEKILAL-NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR  243 (644)
Q Consensus       165 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~  243 (644)
                      ........|++.+|+++..++..+++.+++. +.....  -|.+|...+|+ |..++++..-+|+.-.|..++.+|..|+
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e--ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE--LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGW  642 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh--hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCC
Confidence            4445566789999999999999999999986 333333  44677777888 5556667766666666899999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCc------ccCCCCcHHHHHHHcCCcccccccccC
Q psy2733         244 TPLMAAVGQGQTSVINYLMLRDVALDI------QDIDGNGLLHFLFIKKNFYKTPITREK  297 (644)
Q Consensus       244 TpL~~Aa~~g~~~iv~~Ll~~gadvn~------~d~~G~T~Lh~A~~~~~~~~~~~~~~~  297 (644)
                      ||||+|+.+|+..++..|++.|++...      .+-.|.|+--.|..+|+..+...+.+.
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999999988877543      345699999999988887766555555

>KOG0511|consensus

Probab=97.51  E-value=0.00024  Score=72.16  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=65.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC
Q psy2733         174 FNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQG  253 (644)
Q Consensus       174 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g  253 (644)
                      +--|..|++.|..+.|+.|++.|.+++.  .|...+.||.+|+..||.++|++|+++ |+--..-...|.-. ||++.+ 
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~--vD~fD~spL~lAsLcGHe~vvklLLen-GAiC~rdtf~G~RC-~YgaLn-  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNA--VDRFDSSPLYLASLCGHEDVVKLLLEN-GAICSRDTFDGDRC-HYGALN-  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcch--hhcccccHHHHHHHcCcHHHHHHHHHc-CCcccccccCcchh-hhhhhh-
Confidence            4568999999999999999998877766  667889999999999999999999998 66555555566555 444443 


Q ss_pred             CHHHHHHHHHC
Q psy2733         254 QTSVINYLMLR  264 (644)
Q Consensus       254 ~~~iv~~Ll~~  264 (644)
                       ..+-++|+..
T Consensus       112 -d~IR~mllsy  121 (516)
T KOG0511|consen  112 -DRIRRMLLSY  121 (516)
T ss_pred             -HHHHHHHHHH
Confidence             4455566643

>TIGR00599 rad18 DNA repair protein rad18

Probab=97.49  E-value=4.5e-05  Score=80.41  Aligned_cols=49  Identities=20%  Similarity=0.603  Sum_probs=42.2

Q ss_pred             hhhhhhhcCcccccccCCcCeEEe-cCcccchhhhhc----CCCCccccccccc
Q psy2733         471 KISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       471 ~~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      .+..++....|.||++...+.+.+ |||.||..|...    ...||+||.++..
T Consensus        19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            356677788999999999999999 999999999983    3479999998865

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.41  E-value=0.00011  Score=52.33  Aligned_cols=38  Identities=39%  Similarity=0.996  Sum_probs=30.4

Q ss_pred             cccccccCCc-CeEEe-cCcccchhhhhc-----CCCCccccccc
Q psy2733         480 TCTICMERCR-NTIFL-CGHGTCDVCAKT-----LKFCHMCRKLI  517 (644)
Q Consensus       480 ~C~iC~~~~~-~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i  517 (644)
                      .|.||++... .+.+. |||.+|..|...     ...||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999984 45555 999999999972     45799999864

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.39  E-value=9e-05  Score=52.05  Aligned_cols=33  Identities=36%  Similarity=1.072  Sum_probs=28.8

Q ss_pred             ccccccCCcCeE-Ee-cCcccchhhhhcC------CCCccc
Q psy2733         481 CTICMERCRNTI-FL-CGHGTCDVCAKTL------KFCHMC  513 (644)
Q Consensus       481 C~iC~~~~~~~~-~~-CgH~~C~~C~~~~------~~Cp~C  513 (644)
                      |.||++...+.+ +. |||.+|..|....      .+||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 66 9999999998842      479987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0824|consensus

Probab=97.37  E-value=6e-05  Score=74.39  Aligned_cols=43  Identities=35%  Similarity=0.726  Sum_probs=38.7

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccceE
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~~~  521 (644)
                      ..|.||+......+-+ |+|.+|+.|.+.     ++.|++||.+|.+.|
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence            3699999999999999 999999999993     467999999999877

>smart00184 RING Ring finger

Probab=97.31  E-value=0.00015  Score=49.65  Aligned_cols=33  Identities=36%  Similarity=1.101  Sum_probs=29.1

Q ss_pred             ccccccCCcCeEEe-cCcccchhhhhc-----CCCCccc
Q psy2733         481 CTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMC  513 (644)
Q Consensus       481 C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~C  513 (644)
                      |.||++.....+++ |||.+|..|...     ..+||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999999999999 999999999983     3569987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0520|consensus

Probab=97.31  E-value=0.00033  Score=80.24  Aligned_cols=114  Identities=18%  Similarity=0.095  Sum_probs=87.7

Q ss_pred             CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcccCCCCcHHHHH
Q psy2733         204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM-LRDVALDIQDIDGNGLLHFL  282 (644)
Q Consensus       204 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll-~~gadvn~~d~~G~T~Lh~A  282 (644)
                      ....|+|.+|+++..+..-.++.+++-.+......|.+|.-.+|+++. ++.++.-+|+ -.|..++.+|.+|+||||+|
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCCCcccchH
Confidence            346789999999999999999999985345666777888888888554 4555555554 45888999999999999999


Q ss_pred             HHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCC------CCCCCCCcchhhhcC
Q psy2733         283 FIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSL------ENNNRQKPLDLILED  349 (644)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~------~n~~G~TpL~~A~~~  349 (644)
                      +..|+                               ..++.-|+..|++.+.      .+..|.|+-++|..+
T Consensus       649 a~~G~-------------------------------e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~  690 (975)
T KOG0520|consen  649 AFRGR-------------------------------EKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN  690 (975)
T ss_pred             hhcCH-------------------------------HHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc
Confidence            99998                               5588888888875543      345688888888743

>smart00504 Ubox Modified RING finger domain

Probab=97.19  E-value=0.00028  Score=54.72  Aligned_cols=41  Identities=12%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhcC----CCCccccccccc
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKTL----KFCHMCRKLIEQ  519 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~  519 (644)
                      ..|+||.+...+.+.. |||.+|..|....    ..||+|+.+++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            4799999999999999 9999999999843    579999999854

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1100|consensus

Probab=97.17  E-value=0.00012  Score=70.74  Aligned_cols=45  Identities=33%  Similarity=0.764  Sum_probs=41.2

Q ss_pred             cccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeeec
Q psy2733         401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTT  446 (644)
Q Consensus       401 C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~~  446 (644)
                      |..|.+.. ..|++.||+|++.|+.|....+.||+|+......++.
T Consensus       161 Cr~C~~~~-~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v  205 (207)
T KOG1100|consen  161 CRKCGERE-ATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEV  205 (207)
T ss_pred             ceecCcCC-ceEEeecccceEecccccccCccCCCCcChhhceeec
Confidence            99999998 7788889999999999998899999999999887754

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00016  Score=70.32  Aligned_cols=42  Identities=29%  Similarity=0.669  Sum_probs=36.6

Q ss_pred             cCcccccccCCcCeEEe-cCcccchhhhhc------CCCCccccccccc
Q psy2733         478 MNTCTICMERCRNTIFL-CGHGTCDVCAKT------LKFCHMCRKLIEQ  519 (644)
Q Consensus       478 ~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~------~~~Cp~Cr~~i~~  519 (644)
                      ...|.||++.+-..+.. |||.||-.|.-.      ...||+||+.+.-
T Consensus       215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            46799999999999999 999999999875      3469999988764

>KOG4692|consensus

Probab=97.12  E-value=0.00035  Score=70.08  Aligned_cols=60  Identities=28%  Similarity=0.573  Sum_probs=48.0

Q ss_pred             hcCcccccccCCcCeEEe-cCcccchhhhh----cCCCCccccccccceEEEEEeeecCCCCCCC
Q psy2733         477 EMNTCTICMERCRNTIFL-CGHGTCDVCAK----TLKFCHMCRKLIEQRINISRAFVSPDQNGNT  536 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~----~~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~  536 (644)
                      |+..|+||+..+++.+|. |||.-|.+|+.    ..+.|-.|...|...+..--.+.+.|+.+++
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ld~~~~~~~dd~~h~  485 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVILDKEEEEEEDDDGHK  485 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehhccccccccccCCCcC
Confidence            347999999999999999 99999999999    3589999999998755443455556665544

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.01  E-value=0.0003  Score=71.15  Aligned_cols=42  Identities=24%  Similarity=0.714  Sum_probs=32.0

Q ss_pred             CcccccccC---CcCe-EEe--cCcccchhhhhcC-----CCCccccccccce
Q psy2733         479 NTCTICMER---CRNT-IFL--CGHGTCDVCAKTL-----KFCHMCRKLIEQR  520 (644)
Q Consensus       479 ~~C~iC~~~---~~~~-~~~--CgH~~C~~C~~~~-----~~Cp~Cr~~i~~~  520 (644)
                      ..|++|.+.   ..++ .+.  |||.+|.+|...+     ..||.|+.++...
T Consensus         4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~   56 (309)
T TIGR00570         4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence            579999982   2333 232  9999999999963     3799999988864

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=96.95  E-value=0.0003  Score=68.67  Aligned_cols=45  Identities=31%  Similarity=0.712  Sum_probs=38.1

Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhhc----CCCCccccccccc
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      +.....|.||.+..+-.+.+ |||.||.-|+++    -..||+||.+...
T Consensus        22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            33445699999999999999 999999999995    3689999987764

>KOG0287|consensus

Probab=96.93  E-value=0.0002  Score=71.50  Aligned_cols=47  Identities=21%  Similarity=0.690  Sum_probs=39.7

Q ss_pred             hhhhcCcccccccCCcCeEEe-cCcccchhhhhcC----CCCccccccccce
Q psy2733         474 EIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL----KFCHMCRKLIEQR  520 (644)
Q Consensus       474 ~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~~  520 (644)
                      .+.+..-|-||++-..-.+++ |||.||.-|++..    ..||.|+.+++..
T Consensus        19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence            344445699999999999999 9999999999953    6899999988753

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=96.72  E-value=0.00049  Score=48.58  Aligned_cols=26  Identities=42%  Similarity=1.013  Sum_probs=16.4

Q ss_pred             ccccccCCcC----eEEe-cCcccchhhhhcC
Q psy2733         481 CTICMERCRN----TIFL-CGHGTCDVCAKTL  507 (644)
Q Consensus       481 C~iC~~~~~~----~~~~-CgH~~C~~C~~~~  507 (644)
                      |+||.+ ..+    .+.+ |||.+|.+|..++
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence            899999 677    6777 9999999999854

>KOG1785|consensus

Probab=96.47  E-value=0.0011  Score=67.51  Aligned_cols=45  Identities=29%  Similarity=0.680  Sum_probs=39.4

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhcC------CCCccccccccceEEE
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKTL------KFCHMCRKLIEQRINI  523 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~------~~Cp~Cr~~i~~~~~~  523 (644)
                      ..|.||-|+.+++.+. |||..|..|....      +.||+||-.|+..-.+
T Consensus       370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence            5799999999999999 9999999998743      5899999999986433

>KOG2505|consensus

Probab=96.28  E-value=0.011  Score=62.66  Aligned_cols=72  Identities=13%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHCCCCCCc------ccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHH
Q psy2733         254 QTSVINYLMLRDVALDI------QDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK  327 (644)
Q Consensus       254 ~~~iv~~Ll~~gadvn~------~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~  327 (644)
                      -...+++|.+++++.|.      .+..-.|+||||+..+.                               -.+|.+||+
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~-------------------------------~k~v~~~Le  451 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGA-------------------------------RKCVKYFLE  451 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcch-------------------------------HHHHHHHHH
Confidence            36788889888877654      34457899999999988                               569999999


Q ss_pred             cCCCCCCCCCCCCCcchhhhcCCcHHHHHH
Q psy2733         328 HGAPLSLENNNRQKPLDLILEDTSLLNEIM  357 (644)
Q Consensus       328 ~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~  357 (644)
                      .|+|+..+|..|+||.+++. +.++....+
T Consensus       452 eg~Dp~~kd~~Grtpy~ls~-nkdVk~~F~  480 (591)
T KOG2505|consen  452 EGCDPSTKDGAGRTPYSLSA-NKDVKSIFI  480 (591)
T ss_pred             hcCCchhcccCCCCcccccc-cHHHHHHHH
Confidence            99999999999999999998 666655555

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.25  E-value=0.0019  Score=47.39  Aligned_cols=43  Identities=28%  Similarity=0.569  Sum_probs=36.7

Q ss_pred             hcCcccccccCCcCeEEe-cCcccchhhhh--cCCCCccccccccc
Q psy2733         477 EMNTCTICMERCRNTIFL-CGHGTCDVCAK--TLKFCHMCRKLIEQ  519 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~--~~~~Cp~Cr~~i~~  519 (644)
                      .+..|..|......-++. |||.+|..|-.  +-..||+|-.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence            446799999998888888 99999999977  56799999998874

>KOG2177|consensus

Probab=96.18  E-value=0.0016  Score=68.05  Aligned_cols=43  Identities=37%  Similarity=0.909  Sum_probs=37.6

Q ss_pred             hhhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC----CCCcccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL----KFCHMCR  514 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~----~~Cp~Cr  514 (644)
                      ....+++..|+||++.....+.+ |||.+|..|...+    -.||.||
T Consensus         7 ~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen    7 LEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             hhhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccC
Confidence            34556778999999999999888 9999999999975    4899999

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.17  E-value=0.0034  Score=50.17  Aligned_cols=35  Identities=31%  Similarity=0.682  Sum_probs=26.6

Q ss_pred             cccccccCC-------------cCeEEe-cCcccchhhhhc----CCCCcccc
Q psy2733         480 TCTICMERC-------------RNTIFL-CGHGTCDVCAKT----LKFCHMCR  514 (644)
Q Consensus       480 ~C~iC~~~~-------------~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr  514 (644)
                      .|.||++..             ..++.. |||.|...|..+    -..||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            499998876             344556 999999999983    35899998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>smart00248 ANK ankyrin repeats

Probab=96.17  E-value=0.0082  Score=37.08  Aligned_cols=27  Identities=37%  Similarity=0.575  Sum_probs=24.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVY   27 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n   27 (644)
                      +||||+|+..|+.+++++|++.|.+++
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            589999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.08  E-value=0.011  Score=36.41  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLRDVALD  269 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~gadvn  269 (644)
                      |.||+|+|+..++.++++.|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6677777777777777777777776653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=95.99  E-value=0.004  Score=65.77  Aligned_cols=40  Identities=33%  Similarity=0.371  Sum_probs=38.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA   41 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa   41 (644)
                      |+|||||..|+-++|.+||+.|+|+..+|..|+||.+++.
T Consensus       432 T~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  432 TFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            8999999999999999999999999999999999999887

>KOG3002|consensus

Probab=95.95  E-value=0.0034  Score=64.12  Aligned_cols=41  Identities=34%  Similarity=0.796  Sum_probs=36.7

Q ss_pred             CcccccccCCcCeEEec--Ccccchhhh-hcCCCCccccccccc
Q psy2733         479 NTCTICMERCRNTIFLC--GHGTCDVCA-KTLKFCHMCRKLIEQ  519 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~C--gH~~C~~C~-~~~~~Cp~Cr~~i~~  519 (644)
                      ..|+||++.....+|.|  ||.+|..|. +...+||.||.+|..
T Consensus        49 leCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   49 LDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGN   92 (299)
T ss_pred             ccCchhhccCcccceecCCCcEehhhhhhhhcccCCcccccccc
Confidence            56999999999999997  899999999 456799999999884

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.0046  Score=62.75  Aligned_cols=43  Identities=35%  Similarity=0.664  Sum_probs=33.1

Q ss_pred             hhcCcccccccCCcCe-------------EEe-cCcccchhhhh----cCCCCcccccccc
Q psy2733         476 EEMNTCTICMERCRNT-------------IFL-CGHGTCDVCAK----TLKFCHMCRKLIE  518 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~-------------~~~-CgH~~C~~C~~----~~~~Cp~Cr~~i~  518 (644)
                      .+++.|.||||.....             .-+ |||++--.|.+    +.+.||+||.|+-
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            3458999999983332             344 99999888987    5689999999953

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=95.85  E-value=0.0077  Score=41.64  Aligned_cols=35  Identities=34%  Similarity=0.950  Sum_probs=26.8

Q ss_pred             cccccccccceEEecCCCccccchhhHHHhh----hhhcc
Q psy2733         401 CAVCSELGVANVLLKPCNHAVACEECSSRMK----KCIMC  436 (644)
Q Consensus       401 C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~----~Cp~C  436 (644)
                      |.||.+.....+...||||. .|.+|..+..    +||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence            78999987565577899999 6999997763    78876

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=95.41  E-value=0.012  Score=47.03  Aligned_cols=44  Identities=18%  Similarity=0.207  Sum_probs=33.7

Q ss_pred             hcCcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccce
Q psy2733         477 EMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQR  520 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~~  520 (644)
                      ++..|+|+.+-..+.|.. |||.++..|.+.     -..||+|+.+++..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            457899999999999999 999999999883     35799999998864

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=95.32  E-value=0.012  Score=41.99  Aligned_cols=37  Identities=35%  Similarity=0.873  Sum_probs=29.0

Q ss_pred             cccccccc--cceEEecCCCccccchhhHHHhh----hhhcccc
Q psy2733         401 CAVCSELG--VANVLLKPCNHAVACEECSSRMK----KCIMCKT  438 (644)
Q Consensus       401 C~iC~d~~--~~~v~~~PC~h~~~C~~C~~~~~----~Cp~Cr~  438 (644)
                      |.+|.+..  .....+.+|||. .|.+|...+.    .||+|++
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence            67777653  234666799999 5999999987    9999984

>KOG0824|consensus

Probab=95.25  E-value=0.0073  Score=60.03  Aligned_cols=124  Identities=24%  Similarity=0.497  Sum_probs=78.6

Q ss_pred             CcccccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceeeeeecCCCc-------cCCC-cccc-hhH
Q psy2733         396 NVPVECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEMRVTTDGRM-------VPGI-ERCD-KSK  461 (644)
Q Consensus       396 ~~~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~~~~~~g~~-------~~~~-~~~~-~~~  461 (644)
                      ....+|.||.-....-+. .+|+|- .|..|.+..     +.|++||.+|.+.+...-+.       +++. .... ...
T Consensus         5 ~~~~eC~IC~nt~n~Pv~-l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~~~LK~n~p~~~~~t~~~~~   82 (324)
T KOG0824|consen    5 TKKKECLICYNTGNCPVN-LYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLKYRLKPNTPEVKRITRSQAK   82 (324)
T ss_pred             ccCCcceeeeccCCcCcc-ccccch-hhhhhhcchhhcCCCCCceecCCCCcchhcchhhhhhhcCCCCCCCcccccHHh
Confidence            344689999987644444 499998 699999653     46999999999988654221       1110 1111 111


Q ss_pred             H------HHHHHHHHhhhhhhhcCcccccccCCcCeEEe--cCcccchhhhhc----CCCCccccccccceE
Q psy2733         462 I------ERVNYLESKISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKT----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       462 ~------~~~~~l~~~~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~----~~~Cp~Cr~~i~~~~  521 (644)
                      .      +.+.++++.---..+...|-+|.-.-.-....  |+|.||.-|-..    -+.||.|+..++..+
T Consensus        83 rag~n~nqnvp~~~~dA~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~  154 (324)
T KOG0824|consen   83 RAGVNGNQNVPYMKEDAGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVL  154 (324)
T ss_pred             hhhhhccCCcchhhhhccccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCcee
Confidence            1      11222221112223346788888777666665  999999888763    257999999998765

>KOG0311|consensus

Probab=95.00  E-value=0.0023  Score=64.88  Aligned_cols=54  Identities=22%  Similarity=0.461  Sum_probs=43.8

Q ss_pred             HHHhhhhhhhcCcccccccCCcCeEEe--cCcccchhhhhc-----CCCCccccccccceE
Q psy2733         468 LESKISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKT-----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       468 l~~~~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~-----~~~Cp~Cr~~i~~~~  521 (644)
                      +.-.+..+..+..|+||++-.......  |+|-||.+|+-.     -..||.||+...++-
T Consensus        33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence            444456666778999999999887777  999999999883     258999999887755

>KOG4159|consensus

Probab=94.90  E-value=0.015  Score=61.63  Aligned_cols=48  Identities=25%  Similarity=0.584  Sum_probs=40.0

Q ss_pred             hhhhhhcCcccccccCCcCeEEe-cCcccchhhhhc----CCCCccccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      ...+..+..|.||+...-..+-+ |||.+|..|..+    -..||.||.++.+
T Consensus        78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            33445668999999999999999 999999999553    3689999988875

>KOG1785|consensus

Probab=94.76  E-value=0.011  Score=60.67  Aligned_cols=45  Identities=27%  Similarity=0.741  Sum_probs=38.3

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh------hhhhccccceeeeeec
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM------KKCIMCKTFIEMRVTT  446 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~------~~Cp~Cr~~i~~~~~~  446 (644)
                      -|.||.+.. ..|.+.||||+. |..|...-      ..||+||..|..+.++
T Consensus       371 LCKICaend-KdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  371 LCKICAEND-KDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             HHHHhhccC-CCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccce
Confidence            499999987 889999999995 99998653      4899999999886553

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.71  E-value=0.014  Score=58.66  Aligned_cols=46  Identities=37%  Similarity=0.747  Sum_probs=39.7

Q ss_pred             hhcCcccccccCCcCeEEe-cCcccchhhhhcC------CCCccccccccceE
Q psy2733         476 EEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL------KFCHMCRKLIEQRI  521 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~------~~Cp~Cr~~i~~~~  521 (644)
                      ++...|.||-+...-+..+ |+|..|..|+-++      +.||+||..-..++
T Consensus        59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~  111 (493)
T COG5236          59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV  111 (493)
T ss_pred             cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence            5557899999999888888 9999999999965      58999999887655

>KOG2879|consensus

Probab=94.68  E-value=0.017  Score=56.63  Aligned_cols=43  Identities=28%  Similarity=0.595  Sum_probs=36.0

Q ss_pred             hhcCcccccccCCcCeEEe--cCcccchhhhhcC------CCCcccccccc
Q psy2733         476 EEMNTCTICMERCRNTIFL--CGHGTCDVCAKTL------KFCHMCRKLIE  518 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~------~~Cp~Cr~~i~  518 (644)
                      ....+|++|-+.+......  |||.+|+.|+...      -.||.|..++.
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3446799999999987776  9999999999853      28999998876

>KOG1039|consensus

Probab=94.68  E-value=0.013  Score=60.83  Aligned_cols=46  Identities=30%  Similarity=0.618  Sum_probs=39.2

Q ss_pred             hhcCcccccccCCcCeE-----E---e-cCcccchhhhhc-----------CCCCccccccccceE
Q psy2733         476 EEMNTCTICMERCRNTI-----F---L-CGHGTCDVCAKT-----------LKFCHMCRKLIEQRI  521 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~-----~---~-CgH~~C~~C~~~-----------~~~Cp~Cr~~i~~~~  521 (644)
                      ..+.+|.|||+.....+     |   . |-|.+|..|+..           .+.||+||.+....+
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~  224 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN  224 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence            44578999999999888     6   6 999999999983           367999999998766

>KOG0320|consensus

Probab=94.49  E-value=0.017  Score=53.20  Aligned_cols=44  Identities=25%  Similarity=0.663  Sum_probs=34.2

Q ss_pred             cccccccccccceEEe-cCCCccccchhhHHHhh----hhhccccceeee
Q psy2733         399 VECAVCSELGVANVLL-KPCNHAVACEECSSRMK----KCIMCKTFIEMR  443 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~-~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~~~  443 (644)
                      ..|.||++.-...+.+ --|||. .|+.|.....    +||.|+..|..+
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             cCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchh
Confidence            5699999975454433 489998 6999998764    899999877653

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.017  Score=57.28  Aligned_cols=40  Identities=30%  Similarity=0.622  Sum_probs=32.6

Q ss_pred             CcccccccCCcC---eEEe-cCcccchhhhhcC-----CCCcccccccc
Q psy2733         479 NTCTICMERCRN---TIFL-CGHGTCDVCAKTL-----KFCHMCRKLIE  518 (644)
Q Consensus       479 ~~C~iC~~~~~~---~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~  518 (644)
                      -.|.|||+....   .+.+ |.|.+-..|..+.     .+||+||.+|-
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            689999987654   4555 9999999999963     48999999873

>KOG1813|consensus

Probab=94.41  E-value=0.016  Score=57.55  Aligned_cols=44  Identities=30%  Similarity=0.649  Sum_probs=38.5

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhc----CCCCccccccccceEE
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQRIN  522 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~~~  522 (644)
                      ..|.||.....+.|.. |||.||..|+..    -.+|++|.+.+.....
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~  290 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFN  290 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhccccccCCcceecccccccccc
Confidence            4699999999999999 999999999984    2589999999987653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=94.19  E-value=0.039  Score=38.78  Aligned_cols=40  Identities=38%  Similarity=0.870  Sum_probs=30.2

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh-----hhhhccccce
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFI  440 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i  440 (644)
                      .|.||.+.....+...||||. .|..|....     .+||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence            388898876455666679999 699999754     3699998753

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=94.17  E-value=0.026  Score=53.37  Aligned_cols=42  Identities=24%  Similarity=0.666  Sum_probs=33.6

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh--------------------hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM--------------------KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~--------------------~~Cp~Cr~~i~~  442 (644)
                      .+|.||.+.. ...+..+|||. .|..|....                    .+||.||..|..
T Consensus        19 ~~CpICld~~-~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         19 FDCNICLDQV-RDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             cCCccCCCcC-CCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            5699999986 44455699996 699999642                    279999999977

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=94.01  E-value=0.034  Score=45.12  Aligned_cols=39  Identities=23%  Similarity=0.477  Sum_probs=26.8

Q ss_pred             cccccccCCcC--eEEe-cCcccchhhhhc-------CCCCcccccccc
Q psy2733         480 TCTICMERCRN--TIFL-CGHGTCDVCAKT-------LKFCHMCRKLIE  518 (644)
Q Consensus       480 ~C~iC~~~~~~--~~~~-CgH~~C~~C~~~-------~~~Cp~Cr~~i~  518 (644)
                      .|+.|...-.+  +++- |+|.|-..|+.+       -..|||||++.+
T Consensus        34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            34455443333  3555 999999999872       258999999865

>KOG4692|consensus

Probab=93.99  E-value=0.043  Score=55.47  Aligned_cols=67  Identities=25%  Similarity=0.490  Sum_probs=46.9

Q ss_pred             hhchhHHHhhcccCCCCcccccccccccccceEEecCCCccccchhhHHHh----hhhhccccceeeeeecCCC
Q psy2733         380 QLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRVTTDGR  449 (644)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~~~~g~  449 (644)
                      +++..+........+.....-|.||...+ .+++|.||+|.. |..|..+-    +.|-+|+..+.. +..+++
T Consensus       404 ~l~~~~~~~~~~~lp~sEd~lCpICyA~p-i~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~-~~ld~~  474 (489)
T KOG4692|consen  404 QLPERKEESFNKDLPDSEDNLCPICYAGP-INAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID-VILDKE  474 (489)
T ss_pred             hcchhhHHhhcCCCCCcccccCcceeccc-chhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee-hhcccc
Confidence            33333333333334444445699999988 778999999996 99999774    699999999887 334433

>PHA02929 N1R/p28-like protein; Provisional

Probab=93.98  E-value=0.047  Score=53.92  Aligned_cols=47  Identities=32%  Similarity=0.606  Sum_probs=35.1

Q ss_pred             ccccccccccccc-------eEEecCCCccccchhhHHHh----hhhhccccceeeeee
Q psy2733         398 PVECAVCSELGVA-------NVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRVT  445 (644)
Q Consensus       398 ~~~C~iC~d~~~~-------~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~~  445 (644)
                      ..+|.||++....       .....||+|. .|..|...-    ..||+||..+...++
T Consensus       174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~  231 (238)
T PHA02929        174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIK  231 (238)
T ss_pred             CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence            3579999986322       1345589996 799999664    389999999987664

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=93.96  E-value=0.039  Score=39.18  Aligned_cols=37  Identities=30%  Similarity=0.715  Sum_probs=27.3

Q ss_pred             ccccccccc--cceEEecCCCccccchhhHHHh----hhhhccc
Q psy2733         400 ECAVCSELG--VANVLLKPCNHAVACEECSSRM----KKCIMCK  437 (644)
Q Consensus       400 ~C~iC~d~~--~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr  437 (644)
                      +|.||.+..  ...+...||+|. .|.+|....    ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence            589999753  245556689997 699999775    3899997

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.90  E-value=0.058  Score=37.54  Aligned_cols=35  Identities=37%  Similarity=0.947  Sum_probs=27.4

Q ss_pred             cccccccccceEEecCCCccccchhhHHHhh------hhhcc
Q psy2733         401 CAVCSELGVANVLLKPCNHAVACEECSSRMK------KCIMC  436 (644)
Q Consensus       401 C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~------~Cp~C  436 (644)
                      |.||.+.....+...||||. .|..|..+..      +||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence            67899887455557899999 6999997764      57776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.90  E-value=0.02  Score=42.08  Aligned_cols=41  Identities=29%  Similarity=0.813  Sum_probs=31.6

Q ss_pred             ccccccccccceEEecCCCccccchhhHHH--hhhhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSR--MKKCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~--~~~Cp~Cr~~i~~  442 (644)
                      .|..|.... ......||||++ |..|...  ...||+|..+++.
T Consensus         9 ~~~~~~~~~-~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    9 PCVFCGFVG-TKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF   51 (55)
T ss_pred             eEEEccccc-ccccccccccee-eccccChhhccCCCCCCCcccC
Confidence            478888776 445566999995 9999854  4599999988764

>KOG4739|consensus

Probab=93.86  E-value=0.031  Score=54.35  Aligned_cols=39  Identities=33%  Similarity=0.808  Sum_probs=29.5

Q ss_pred             cccccccCCcCeEE-e--cCcccchhhhhcC--CCCcccccccc
Q psy2733         480 TCTICMERCRNTIF-L--CGHGTCDVCAKTL--KFCHMCRKLIE  518 (644)
Q Consensus       480 ~C~iC~~~~~~~~~-~--CgH~~C~~C~~~~--~~Cp~Cr~~i~  518 (644)
                      .|-.|+-.+...-| +  |+|++|..|....  ..||+|+++|.
T Consensus         5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir   48 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR   48 (233)
T ss_pred             EeccccccCCCCceeeeechhhhhhhhcccCCccccccccceee
Confidence            47777766555443 3  9999999999954  48999999954

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.71  E-value=0.02  Score=53.20  Aligned_cols=43  Identities=30%  Similarity=0.726  Sum_probs=36.9

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhc-C---CCCccccccccceE
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKT-L---KFCHMCRKLIEQRI  521 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-~---~~Cp~Cr~~i~~~~  521 (644)
                      ..|.||..--...|.. |||.||..|+.+ +   ..|-+|-+....+.
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f  244 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRF  244 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhccce
Confidence            6899999999999999 999999999984 3   57999988776654

>KOG0802|consensus

Probab=93.49  E-value=0.031  Score=62.89  Aligned_cols=43  Identities=30%  Similarity=0.667  Sum_probs=35.4

Q ss_pred             cCcccccccCCcC-----eEEe-cCcccchhhhh----cCCCCccccccccce
Q psy2733         478 MNTCTICMERCRN-----TIFL-CGHGTCDVCAK----TLKFCHMCRKLIEQR  520 (644)
Q Consensus       478 ~~~C~iC~~~~~~-----~~~~-CgH~~C~~C~~----~~~~Cp~Cr~~i~~~  520 (644)
                      ...|.||+|....     ...+ |||.++..|..    +...||+||..+...
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~  343 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDY  343 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence            4689999999988     5666 99999999988    457999999954443

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.48  E-value=0.042  Score=49.70  Aligned_cols=20  Identities=50%  Similarity=1.029  Sum_probs=17.6

Q ss_pred             cCcccccccCCcCeEEe-cC-c
Q psy2733         478 MNTCTICMERCRNTIFL-CG-H  497 (644)
Q Consensus       478 ~~~C~iC~~~~~~~~~~-Cg-H  497 (644)
                      +..|+||||-|=+.|++ |. |
T Consensus         2 d~~CpICme~PHNAVLLlCSS~   23 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSH   23 (162)
T ss_pred             CccCceeccCCCceEEEEeccc
Confidence            45799999999999999 95 5

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.32  E-value=0.36  Score=46.44  Aligned_cols=113  Identities=20%  Similarity=0.266  Sum_probs=76.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCC----CHHHHHHH-
Q psy2733         177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR----TPLMAAVG-  251 (644)
Q Consensus       177 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~----TpL~~Aa~-  251 (644)
                      |--|+..-+++-+.-++...         .+-.++|.+|...+..+++-+|+.+  .....+|.-..    --+.|+.. 
T Consensus       157 ledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~--f~ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSK--FNFTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhh--cceecchhhhcCcchhhHHHHHhh
Confidence            45566666666555544321         3446788888888888888888876  34555553222    23344433 


Q ss_pred             -cCCHHHHHHHHHCC-CCCCcc---cCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHH
Q psy2733         252 -QGQTSVINYLMLRD-VALDIQ---DIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLV  326 (644)
Q Consensus       252 -~g~~~iv~~Ll~~g-advn~~---d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll  326 (644)
                       ..+..++++.+.+| +++|.+   -+.|.|.|--|+..++                               -+++.+|+
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~-------------------------------~emi~~Ll  274 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKN-------------------------------SEMIAFLL  274 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCc-------------------------------HHHHHHHH
Confidence             34678888888887 567754   4679999999998888                               56899999


Q ss_pred             HcCCC
Q psy2733         327 KHGAP  331 (644)
Q Consensus       327 ~~Gad  331 (644)
                      ++||-
T Consensus       275 k~GA~  279 (284)
T PF06128_consen  275 KYGAI  279 (284)
T ss_pred             HcCcc
Confidence            99984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PHA02926 zinc finger-like protein; Provisional

Probab=93.11  E-value=0.061  Score=51.49  Aligned_cols=46  Identities=30%  Similarity=0.637  Sum_probs=34.4

Q ss_pred             cccccccccccc--------eEEecCCCccccchhhHHHhh----------hhhccccceeeeee
Q psy2733         399 VECAVCSELGVA--------NVLLKPCNHAVACEECSSRMK----------KCIMCKTFIEMRVT  445 (644)
Q Consensus       399 ~~C~iC~d~~~~--------~v~~~PC~h~~~C~~C~~~~~----------~Cp~Cr~~i~~~~~  445 (644)
                      .+|.||++....        --.+.+|+|. .|..|...-+          .||.||+.....++
T Consensus       171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        171 KECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             CCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence            569999986321        1345599998 7999997654          29999999886554

>KOG2231|consensus

Probab=93.08  E-value=0.031  Score=62.52  Aligned_cols=107  Identities=25%  Similarity=0.507  Sum_probs=71.0

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh----------hhhccccceeeeeecCCCccCCCcccchhHHHHHHHHH
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK----------KCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLE  469 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~----------~Cp~Cr~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~l~  469 (644)
                      -|.||.... .-+..-.|||..+|+.|..+++          -||.|+..++...--+-+...+-.+           ..
T Consensus         2 ~c~ic~~s~-~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~~~~~~t~~-----------~~   69 (669)
T KOG2231|consen    2 SCAICAFSP-DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDSSDAVGTFP-----------EG   69 (669)
T ss_pred             CcceeecCc-cccccccccccccchhhhhhhhhhcccccccccCcccccceeeeccccccccccccc-----------cc
Confidence            388998876 5566669999999999997763          4699998887765443322222111           01


Q ss_pred             HhhhhhhhcCcccccccCCcCeEEe--cCcccchhhhhcC------CCCccccccccc
Q psy2733         470 SKISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKTL------KFCHMCRKLIEQ  519 (644)
Q Consensus       470 ~~~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~------~~Cp~Cr~~i~~  519 (644)
                      .+-.-.+++..|.||++.......+  |-|..|..|..+.      +.|+.| ..+..
T Consensus        70 ~~~~~~~~e~~~~if~~d~~~y~~~~~~~~~~C~~C~~~~~~~~~~~~~~~c-~~~~s  126 (669)
T KOG2231|consen   70 RKCDFDEHEDTCVIFFADKLTYTKLEACLHHSCHICDRRFRALYNKKECLHC-TEFKS  126 (669)
T ss_pred             cccccccccceeeeeeccccHHHHHHHHHhhhcCccccchhhhcccCCCccc-cchhH
Confidence            1112234556799996666555544  9998899999966      379999 55443

>KOG0823|consensus

Probab=92.51  E-value=0.061  Score=51.85  Aligned_cols=42  Identities=26%  Similarity=0.764  Sum_probs=34.3

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-------hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-------KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-------~~Cp~Cr~~i~~  442 (644)
                      .+|-||+|.. +..+.-.|||+ .|=.|..+-       +.||+|+..|..
T Consensus        48 FdCNICLd~a-kdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   48 FDCNICLDLA-KDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             eeeeeecccc-CCCEEeecccc-eehHHHHHHHhhcCCCeeCCcccccccc
Confidence            5799999987 55555599999 699999663       478999999877

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=92.36  E-value=0.12  Score=36.36  Aligned_cols=29  Identities=31%  Similarity=0.843  Sum_probs=21.4

Q ss_pred             cccccccccceEEecCCCccccchhhHHHhh
Q psy2733         401 CAVCSELGVANVLLKPCNHAVACEECSSRMK  431 (644)
Q Consensus       401 C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~  431 (644)
                      |.||++.. ..-+..+|||. .|.+|..+..
T Consensus         1 CpiC~~~~-~~Pv~l~CGH~-FC~~Cl~~~~   29 (42)
T PF15227_consen    1 CPICLDLF-KDPVSLPCGHS-FCRSCLERLW   29 (42)
T ss_dssp             ETTTTSB--SSEEE-SSSSE-EEHHHHHHHH
T ss_pred             CCccchhh-CCccccCCcCH-HHHHHHHHHH
Confidence            78999987 44444599998 5999998874

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.27  E-value=0.064  Score=52.63  Aligned_cols=41  Identities=24%  Similarity=0.554  Sum_probs=33.8

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh------hhhhcccccee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM------KKCIMCKTFIE  441 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~------~~Cp~Cr~~i~  441 (644)
                      .+|.+|++.+ ....+.||||. .|-.|.-.+      ..||.||+.+.
T Consensus       216 ~kC~lC~e~~-~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         216 YKCFLCLEEP-EVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             cceeeeeccc-CCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence            5699999998 77788899998 688998553      37999998764

>smart00184 RING Ring finger

Probab=92.20  E-value=0.11  Score=35.04  Aligned_cols=34  Identities=29%  Similarity=0.884  Sum_probs=25.9

Q ss_pred             cccccccccceEEecCCCccccchhhHHHhh-----hhhcc
Q psy2733         401 CAVCSELGVANVLLKPCNHAVACEECSSRMK-----KCIMC  436 (644)
Q Consensus       401 C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-----~Cp~C  436 (644)
                      |.||.+.. ......||+|. .|..|.....     +||.|
T Consensus         1 C~iC~~~~-~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL-KDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC-CCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence            67888875 55666699999 6999997653     47776

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.72  E-value=0.78  Score=44.24  Aligned_cols=118  Identities=13%  Similarity=0.091  Sum_probs=76.6

Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCc--cCCcCCCCCchHHHHHHh--
Q psy2733         142 PMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNL--ATVPKTSDGFTPLHVACF--  217 (644)
Q Consensus       142 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~~d~~g~T~Lh~A~~--  217 (644)
                      .|--|+...+.+-+.-++..        .....+++-+|+.++..+++..|+....-.  +...- ..+.--+-++..  
T Consensus       156 sledAV~AsN~~~i~~~Vtd--------KkdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h  226 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTD--------KKDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEH  226 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcc--------hHHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhc
Confidence            45667777776666666652        123456777777777777777777643210  00000 112223333332  


Q ss_pred             cCcHHHHHHHHHhcCCCccc---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Q psy2733         218 NDHIEIVELLVEKYKVNINA---LDLKKRTPLMAAVGQGQTSVINYLMLRDVAL  268 (644)
Q Consensus       218 ~g~~~~v~~Ll~~~g~~in~---~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadv  268 (644)
                      ..+..++++.++++-+++|.   +-+.|.|-|--|+.+++.+++.+|+++||-.
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            34577888999887677775   3478999999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=91.51  E-value=0.11  Score=53.04  Aligned_cols=44  Identities=23%  Similarity=0.607  Sum_probs=32.4

Q ss_pred             cccccccc----ccceEEecCCCccccchhhHHHhh-----hhhccccceeeee
Q psy2733         400 ECAVCSEL----GVANVLLKPCNHAVACEECSSRMK-----KCIMCKTFIEMRV  444 (644)
Q Consensus       400 ~C~iC~d~----~~~~v~~~PC~h~~~C~~C~~~~~-----~Cp~Cr~~i~~~~  444 (644)
                      .|.+|...    +.......+|||. .|.+|...+.     .||.|+..+...-
T Consensus         5 ~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         5 GCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            59999973    2111233389999 5999999974     7999999887743

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0317|consensus

Probab=91.35  E-value=0.063  Score=53.38  Aligned_cols=42  Identities=26%  Similarity=0.658  Sum_probs=33.2

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      ..|.+|++.. .+-..-||||. .|=+|...-    ..||.||.....
T Consensus       240 ~kC~LCLe~~-~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  240 RKCSLCLENR-SNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CceEEEecCC-CCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCC
Confidence            5699999987 55667799998 699998553    379999987643

>KOG2113|consensus

Probab=91.30  E-value=0.27  Score=49.26  Aligned_cols=43  Identities=12%  Similarity=-0.109  Sum_probs=37.2

Q ss_pred             CcccccccCCcCeEEe-cCc-ccchhhhhcC--CCCccccccccceE
Q psy2733         479 NTCTICMERCRNTIFL-CGH-GTCDVCAKTL--KFCHMCRKLIEQRI  521 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH-~~C~~C~~~~--~~Cp~Cr~~i~~~~  521 (644)
                      +.|.+|-+.....++. ||| .+|.+|+...  ..||.|......-+
T Consensus       344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~  390 (394)
T KOG2113|consen  344 LKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLV  390 (394)
T ss_pred             cccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeee
Confidence            7899999999999999 999 7799999943  68999988776544

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=91.02  E-value=0.064  Score=38.57  Aligned_cols=36  Identities=31%  Similarity=0.822  Sum_probs=16.6

Q ss_pred             ccccccCC--cCeEEe---cCcccchhhhhcC-----CCCcccccc
Q psy2733         481 CTICMERC--RNTIFL---CGHGTCDVCAKTL-----KFCHMCRKL  516 (644)
Q Consensus       481 C~iC~~~~--~~~~~~---CgH~~C~~C~~~~-----~~Cp~Cr~~  516 (644)
                      |++|.+..  .+..|.   ||+.+|..|..++     ..||-||++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            56776655  333444   8999999996643     479999986

>KOG0978|consensus

Probab=90.71  E-value=0.06  Score=60.54  Aligned_cols=40  Identities=30%  Similarity=0.827  Sum_probs=34.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccce
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFI  440 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i  440 (644)
                      -.|.+|.+++ ..+++.-|+|. .|..|..+.     ++||.|....
T Consensus       644 LkCs~Cn~R~-Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aF  688 (698)
T KOG0978|consen  644 LKCSVCNTRW-KDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAF  688 (698)
T ss_pred             eeCCCccCch-hhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCC
Confidence            3599999988 88888899998 699999664     6999998654

>KOG1814|consensus

Probab=89.80  E-value=0.16  Score=52.96  Aligned_cols=27  Identities=41%  Similarity=0.850  Sum_probs=24.2

Q ss_pred             CcccccccCCcC---eEEe-cCcccchhhhh
Q psy2733         479 NTCTICMERCRN---TIFL-CGHGTCDVCAK  505 (644)
Q Consensus       479 ~~C~iC~~~~~~---~~~~-CgH~~C~~C~~  505 (644)
                      ..|.|||+...-   ++|+ |+|++|..|..
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~k  215 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLK  215 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHH
Confidence            679999998876   7778 99999999988

>KOG4628|consensus

Probab=89.62  E-value=0.17  Score=52.47  Aligned_cols=42  Identities=31%  Similarity=0.725  Sum_probs=32.9

Q ss_pred             cccccccCCcC---eEEe-cCcccchhhhhcC-----CCCccccccccceE
Q psy2733         480 TCTICMERCRN---TIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQRI  521 (644)
Q Consensus       480 ~C~iC~~~~~~---~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~~~  521 (644)
                      .|.||+|.-..   ++.+ |+|.|=..|....     +.||+|+..|.+..
T Consensus       231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             eEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            89999987654   5667 9999988898842     34999999887644

>TIGR00599 rad18 DNA repair protein rad18

Probab=88.70  E-value=0.22  Score=52.96  Aligned_cols=42  Identities=26%  Similarity=0.707  Sum_probs=33.3

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.. ...+..||||. .|..|....    ..||.|+..+..
T Consensus        27 l~C~IC~d~~-~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        27 LRCHICKDFF-DVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cCCCcCchhh-hCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence            4699999976 44445699998 599999764    379999998765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1001|consensus

Probab=88.11  E-value=0.21  Score=57.10  Aligned_cols=42  Identities=29%  Similarity=0.778  Sum_probs=35.4

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhcC------CCCccccccccceE
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKTL------KFCHMCRKLIEQRI  521 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~------~~Cp~Cr~~i~~~~  521 (644)
                      ..|.+|++ ....++. |||.+|.+|....      ..||+||..+....
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999 7777777 9999999998832      37999999988754

>KOG0297|consensus

Probab=88.08  E-value=0.25  Score=53.17  Aligned_cols=49  Identities=31%  Similarity=0.698  Sum_probs=41.2

Q ss_pred             hhhcCcccccccCCcCeEE-e-cCcccchhhhhcC----CCCccccccccceEEE
Q psy2733         475 IEEMNTCTICMERCRNTIF-L-CGHGTCDVCAKTL----KFCHMCRKLIEQRINI  523 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~-~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~~~~~  523 (644)
                      +++...|.+|+....+.+- . |||.+|..|....    ..||.||..+.....+
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence            5666899999999999999 5 9999999999853    5899999888865533

>KOG0804|consensus

Probab=87.26  E-value=0.29  Score=51.63  Aligned_cols=44  Identities=27%  Similarity=0.670  Sum_probs=33.3

Q ss_pred             hhhcCcccccccCCcCeE---Ee--cCcccchhhhhcC--CCCcccccccc
Q psy2733         475 IEEMNTCTICMERCRNTI---FL--CGHGTCDVCAKTL--KFCHMCRKLIE  518 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~---~~--CgH~~C~~C~~~~--~~Cp~Cr~~i~  518 (644)
                      +.+...|+||+++.-..+   +.  |-|.|=..|....  ..||+||-..+
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence            345578999998876654   44  9999977888865  58999996554

>KOG0287|consensus

Probab=86.44  E-value=0.27  Score=49.73  Aligned_cols=41  Identities=24%  Similarity=0.708  Sum_probs=34.6

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      -|.||.+-. ....+.||+|- .|+-|....    ..||.|+..+++
T Consensus        25 RC~IC~eyf-~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   25 RCGICFEYF-NIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHhHHHHHh-cCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence            399999976 55677799998 699999876    389999999877

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.25  E-value=6  Score=37.26  Aligned_cols=129  Identities=13%  Similarity=0.034  Sum_probs=79.1

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCc
Q psy2733         141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH  220 (644)
Q Consensus       141 TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~  220 (644)
                      -.|..|++.+...+++..-+...    ..-....+.+-.||+..+.++|+++-+.-.-       .+-.+.+-.|....+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~----~~~~~~q~LFElAC~~qkydiV~WI~qnL~i-------~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLE----NERYLNQELFELACEEQKYDIVKWIGQNLHI-------YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhh----cchhHHHHHHHHHHHHccccHHHHHhhccCC-------CCchhhhhhhhhccc
Confidence            45677888888888877655211    1123456777888988899999888442211       233456677777776


Q ss_pred             HHHHH----HHHHhcCCCcccCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         221 IEIVE----LLVEKYKVNINALDLK--KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       221 ~~~v~----~Ll~~~g~~in~~d~~--G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .+...    ++++.. ..-...|..  -.--|..|+..|-..-+...+++|.+++.      ++|..|+..++
T Consensus       117 lsLyslGY~l~~~~~-~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynh  182 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRM-MSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNH  182 (192)
T ss_pred             hhHHHHHHHHHHhhc-ccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhH
Confidence            65532    222221 000001100  00236788889999988888888888753      78888888777

These proteins may be involved in promoting survival of infected macrophages [].

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.00  E-value=0.7  Score=46.93  Aligned_cols=46  Identities=30%  Similarity=0.767  Sum_probs=37.9

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh------hhhccccceeeeeecC
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK------KCIMCKTFIEMRVTTD  447 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~------~Cp~Cr~~i~~~~~~~  447 (644)
                      .|.||.+.. ..+...||+|.. |.-|.-+++      .||+||..-+..+-..
T Consensus        63 ~C~ICA~~~-TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~  114 (493)
T COG5236          63 NCQICAGST-TYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVVFTA  114 (493)
T ss_pred             eeEEecCCc-eEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEEEec
Confidence            499998876 777777999995 999997764      8999999988876643

>KOG2660|consensus

Probab=85.93  E-value=0.2  Score=50.84  Aligned_cols=50  Identities=24%  Similarity=0.587  Sum_probs=42.5

Q ss_pred             hhhhhhcCcccccccCCcCeEEe--cCcccchhhhh----cCCCCccccccccceE
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAK----TLKFCHMCRKLIEQRI  521 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~----~~~~Cp~Cr~~i~~~~  521 (644)
                      +.++.....|.+|-.-.++....  |-|.||.+|.-    ....||+|...|.+..
T Consensus         9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~   64 (331)
T KOG2660|consen    9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH   64 (331)
T ss_pred             hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence            44556668899999999998877  99999999987    4579999999998875

>KOG2164|consensus

Probab=85.42  E-value=0.43  Score=51.35  Aligned_cols=43  Identities=23%  Similarity=0.661  Sum_probs=33.6

Q ss_pred             ccccccccccccceEEecCCCccccchhhHHHh---------hhhhccccceee
Q psy2733         398 PVECAVCSELGVANVLLKPCNHAVACEECSSRM---------KKCIMCKTFIEM  442 (644)
Q Consensus       398 ~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~---------~~Cp~Cr~~i~~  442 (644)
                      ...|.||++.+ .....--|||. .|-.|.=++         ++||+|+..|.-
T Consensus       186 ~~~CPICL~~~-~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPP-SVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCC-CcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            35699999988 44444469998 699998554         489999999987

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.31  E-value=3.5  Score=33.06  Aligned_cols=48  Identities=29%  Similarity=0.450  Sum_probs=32.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhc
Q psy2733         175 NILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKY  231 (644)
Q Consensus       175 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~  231 (644)
                      .-+..|+..|+.++++.+++.+..         ....|..|+..-+.+++++|+++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~---------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP---------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc---------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            346777777777777777754411         135577777777777788777764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.29  E-value=0.64  Score=46.21  Aligned_cols=56  Identities=29%  Similarity=0.556  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHhhhhhhhc----------CcccccccCCcCeEEe--cCcccchhhhhc-----CCCCccccc
Q psy2733         460 SKIERVNYLESKISEIEEM----------NTCTICMERCRNTIFL--CGHGTCDVCAKT-----LKFCHMCRK  515 (644)
Q Consensus       460 ~~~~~~~~l~~~~~~~~~~----------~~C~iC~~~~~~~~~~--CgH~~C~~C~~~-----~~~Cp~Cr~  515 (644)
                      .+.+.-++-.+.+....++          ..|+.|.--.++.+-+  |||.+|.+|+..     -..||.|..
T Consensus       246 qsWe~Yq~r~~a~~~~~Dqv~k~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         246 QSWEKYQQRTKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             HHHHHHHHHHHhhhhCchhhhccCCCCccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            3344444444444444444          7899999888888777  999999999993     358999986

>KOG2879|consensus

Probab=85.26  E-value=0.67  Score=45.86  Aligned_cols=44  Identities=27%  Similarity=0.656  Sum_probs=36.0

Q ss_pred             cccccccccccccceEEecCCCccccchhhHHHhh------hhhcccccee
Q psy2733         397 VPVECAVCSELGVANVLLKPCNHAVACEECSSRMK------KCIMCKTFIE  441 (644)
Q Consensus       397 ~~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~------~Cp~Cr~~i~  441 (644)
                      +..+|.+|.+.+.--....||||. .|.-|...-.      .||.|.+.++
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence            346899999988666777799996 6999997653      8999998775

>KOG0804|consensus

Probab=84.57  E-value=0.48  Score=50.01  Aligned_cols=74  Identities=26%  Similarity=0.485  Sum_probs=51.9

Q ss_pred             cccccccccc---ceEEecCCCccccchhhHHHhh--hhhccccceeeeeecCCCccCCCcccchhHHHHHHHHHHhhhh
Q psy2733         400 ECAVCSELGV---ANVLLKPCNHAVACEECSSRMK--KCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISE  474 (644)
Q Consensus       400 ~C~iC~d~~~---~~v~~~PC~h~~~C~~C~~~~~--~Cp~Cr~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (644)
                      -|.||+++.-   ..++-.+|.|--- -.|...-.  .||+||..-.                               ..
T Consensus       177 TCpVCLERMD~s~~gi~t~~c~Hsfh-~~cl~~w~~~scpvcR~~q~-------------------------------p~  224 (493)
T KOG0804|consen  177 TCPVCLERMDSSTTGILTILCNHSFH-CSCLMKWWDSSCPVCRYCQS-------------------------------PS  224 (493)
T ss_pred             CcchhHhhcCccccceeeeecccccc-hHHHhhcccCcChhhhhhcC-------------------------------cc
Confidence            3999998632   3346668999754 24554433  8999995442                               12


Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhh
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAK  505 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~  505 (644)
                      ..+...|.+|--..--++++ |||+.|....+
T Consensus       225 ~ve~~~c~~c~~~~~LwicliCg~vgcgrY~e  256 (493)
T KOG0804|consen  225 VVESSLCLACGCTEDLWICLICGNVGCGRYKE  256 (493)
T ss_pred             hhhhhhhhhhcccccEEEEEEccceecccccc
Confidence            34556799998888889999 99988877655

>KOG3039|consensus

Probab=84.53  E-value=0.66  Score=45.01  Aligned_cols=44  Identities=18%  Similarity=0.366  Sum_probs=35.7

Q ss_pred             hcCcccccccCCcC----eEEe-cCcccchhhhhcC----CCCccccccccce
Q psy2733         477 EMNTCTICMERCRN----TIFL-CGHGTCDVCAKTL----KFCHMCRKLIEQR  520 (644)
Q Consensus       477 ~~~~C~iC~~~~~~----~~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~~  520 (644)
                      ....|+||.+...+    +++. |||++|.+|.+++    ..||+|-.+.+.+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence            55789999876655    3455 9999999999975    3699999999875

>PF04641 Rtf2: Rtf2 RING-finger

Probab=84.27  E-value=0.69  Score=46.90  Aligned_cols=45  Identities=24%  Similarity=0.483  Sum_probs=36.6

Q ss_pred             hhcCcccccccCCc---CeEEe--cCcccchhhhhcCC---CCccccccccce
Q psy2733         476 EEMNTCTICMERCR---NTIFL--CGHGTCDVCAKTLK---FCHMCRKLIEQR  520 (644)
Q Consensus       476 ~~~~~C~iC~~~~~---~~~~~--CgH~~C~~C~~~~~---~Cp~Cr~~i~~~  520 (644)
                      .....|+|......   ..|++  |||+++..+...++   .||+|-.+.+..
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccC
Confidence            44578999987663   35565  99999999999887   799999998864

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=84.23  E-value=0.82  Score=32.27  Aligned_cols=30  Identities=27%  Similarity=0.954  Sum_probs=15.5

Q ss_pred             ccccccccc--ceEEecCCCccccchhhHHHhh
Q psy2733         401 CAVCSELGV--ANVLLKPCNHAVACEECSSRMK  431 (644)
Q Consensus       401 C~iC~d~~~--~~v~~~PC~h~~~C~~C~~~~~  431 (644)
                      |.||.+...  ..-...||||. .|.+|..++.
T Consensus         1 CpIc~e~~~~~n~P~~L~CGH~-~c~~cl~~l~   32 (43)
T PF13445_consen    1 CPICKEFSTEENPPMVLPCGHV-FCKDCLQKLS   32 (43)
T ss_dssp             -TTT----TTSS-EEE-SSS-E-EEHHHHHHHH
T ss_pred             CCccccccCCCCCCEEEeCccH-HHHHHHHHHH
Confidence            667776310  11344589998 5999998874

>KOG1002|consensus

Probab=83.83  E-value=0.31  Score=52.13  Aligned_cols=41  Identities=24%  Similarity=0.597  Sum_probs=35.1

Q ss_pred             cCcccccccCCcCeEEe-cCcccchhhhhc---------CCCCcccccccc
Q psy2733         478 MNTCTICMERCRNTIFL-CGHGTCDVCAKT---------LKFCHMCRKLIE  518 (644)
Q Consensus       478 ~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~---------~~~Cp~Cr~~i~  518 (644)
                      +..|.+|.|...+.+-. |.|.+|..|...         --.||.|-.+.+
T Consensus       536 ~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  536 EVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             ceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            37999999999999999 999999999951         258999987665

>KOG4367|consensus

Probab=83.50  E-value=0.48  Score=49.44  Aligned_cols=33  Identities=36%  Similarity=0.889  Sum_probs=29.3

Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhhcC
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL  507 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~  507 (644)
                      ++++..|+||-.-..+.+++ |||..|.-|+..+
T Consensus         1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~   34 (699)
T KOG4367|consen    1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNI   34 (699)
T ss_pred             CcccccCceehhhccCceEeecccHHHHHHHHhh
Confidence            36778899999999999999 9999999999843

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=83.45  E-value=4.1  Score=38.30  Aligned_cols=129  Identities=12%  Similarity=0.047  Sum_probs=81.6

Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHhcC
Q psy2733         122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE----KILALNR  197 (644)
Q Consensus       122 v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~----~Ll~~~~  197 (644)
                      ..+|.++.-.....-...++.+-.|++..+.++|+|+-+.      ..-.+-.+.+..|....+.++..    .++.+..
T Consensus        59 L~ILqkyke~L~~~~~~~q~LFElAC~~qkydiV~WI~qn------L~i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~  132 (192)
T PF03158_consen   59 LSILQKYKEDLENERYLNQELFELACEEQKYDIVKWIGQN------LHIYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMM  132 (192)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHccccHHHHHhhc------cCCCCchhhhhhhhhccchhHHHHHHHHHHhhcc
Confidence            4444444333321123567888999999999999999652      11223345677888888877632    2333221


Q ss_pred             CccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2733         198 NLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML  263 (644)
Q Consensus       198 ~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~  263 (644)
                      .......+.--.--|..|+..|-...+...++. |.+++.      ++|-.|+.+++..++.+++.
T Consensus       133 ~~~~~d~~~ll~~hl~~a~~kgll~F~letlky-gg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  133 SEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKY-GGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             cccccCHHHHHHHHHHHHHHCCCHHHHHHHHHc-CCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            110000000011246789999999999988988 445542      79999999999999999874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG0828|consensus

Probab=82.46  E-value=0.42  Score=50.81  Aligned_cols=44  Identities=32%  Similarity=0.683  Sum_probs=32.3

Q ss_pred             hhhcCcccccccCC-----------------cCeEEe-cCcccchhhhhc----CC-CCcccccccc
Q psy2733         475 IEEMNTCTICMERC-----------------RNTIFL-CGHGTCDVCAKT----LK-FCHMCRKLIE  518 (644)
Q Consensus       475 ~~~~~~C~iC~~~~-----------------~~~~~~-CgH~~C~~C~~~----~~-~Cp~Cr~~i~  518 (644)
                      .++...|+|||...                 ++..++ |-|.+-..|..+    .+ .||.||.++-
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            45567899999643                 234556 888888899884    23 8999999864

>smart00504 Ubox Modified RING finger domain

Probab=81.45  E-value=1.2  Score=34.10  Aligned_cols=40  Identities=8%  Similarity=0.100  Sum_probs=30.2

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh----hhhcccccee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK----KCIMCKTFIE  441 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~  441 (644)
                      .|.||.+.. ..-+..||||. .|.+|.....    .||.|+..+.
T Consensus         3 ~Cpi~~~~~-~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        3 LCPISLEVM-KDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             CCcCCCCcC-CCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence            388998876 34455699976 6999997763    6999998763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG2932|consensus

Probab=80.66  E-value=0.74  Score=46.17  Aligned_cols=43  Identities=23%  Similarity=0.519  Sum_probs=30.8

Q ss_pred             CcccccccCCcC-eEEe-cCcccchhhhhc--CCCCccccccccceE
Q psy2733         479 NTCTICMERCRN-TIFL-CGHGTCDVCAKT--LKFCHMCRKLIEQRI  521 (644)
Q Consensus       479 ~~C~iC~~~~~~-~~~~-CgH~~C~~C~~~--~~~Cp~Cr~~i~~~~  521 (644)
                      ..|.-|--..+- -.++ |.|+||.+|+..  .+.||.|-.+|.+.-
T Consensus        91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe  137 (389)
T KOG2932|consen   91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE  137 (389)
T ss_pred             EeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence            456666433333 2345 999999999995  569999998887643

>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues

Probab=80.39  E-value=0.16  Score=41.93  Aligned_cols=41  Identities=32%  Similarity=0.741  Sum_probs=32.9

Q ss_pred             hhhhhcCcccccccCCcCeEEecCcccchhhhhcCCCCcccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKL  516 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~CgH~~C~~C~~~~~~Cp~Cr~~  516 (644)
                      ..+.....|..|....+.-++   |.+|..|+.....|+-|..+
T Consensus        50 KpLt~p~kC~~C~qktVk~AY---h~iC~~Ca~~~~vCaKC~k~   90 (92)
T PF10217_consen   50 KPLTQPKKCNKCQQKTVKHAY---HVICDPCAKELKVCAKCGKP   90 (92)
T ss_pred             ccCCCCccccccccchHHHHH---HHHHHHHHHhhccCcccCCC
Confidence            344556779999988775554   78899999999999999875

The region is conserved from plants to humans but its function is unknown.

>KOG1701|consensus

Probab=80.14  E-value=0.68  Score=48.60  Aligned_cols=90  Identities=21%  Similarity=0.398  Sum_probs=56.8

Q ss_pred             cccccccccceEEecCCCccccchhhHH-HhhhhhccccceeeeeecCCCccCCCcccchhHHHHHHHHHHhhhhhhhc-
Q psy2733         401 CAVCSELGVANVLLKPCNHAVACEECSS-RMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEM-  478 (644)
Q Consensus       401 C~iC~d~~~~~v~~~PC~h~~~C~~C~~-~~~~Cp~Cr~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-  478 (644)
                      |..|.... +--.|.-=...+.|+.|-+ .+.+|-.|...|.++|                           ++.+... 
T Consensus       305 C~~C~r~L-~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I~d~i---------------------------LrA~Gkay  356 (468)
T KOG1701|consen  305 CRTCRRQL-AGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPIMDRI---------------------------LRALGKAY  356 (468)
T ss_pred             hHhhhhhh-ccccccccCCcccchHHHHHHHHHHhhhhhHHHHHH---------------------------HHhccccc
Confidence            44444443 3333434445567888874 4679999998887766                           3333333 


Q ss_pred             ----CcccccccCCcCeEEe--cCc-ccchhhhhcC--CCCcccccccc
Q psy2733         479 ----NTCTICMERCRNTIFL--CGH-GTCDVCAKTL--KFCHMCRKLIE  518 (644)
Q Consensus       479 ----~~C~iC~~~~~~~~~~--CgH-~~C~~C~~~~--~~Cp~Cr~~i~  518 (644)
                          ..|++|..-.-.+-|+  =.- ++|..|..+.  .+|-+|-.+|-
T Consensus       357 Hp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~  405 (468)
T KOG1701|consen  357 HPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPIL  405 (468)
T ss_pred             CCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCcc
Confidence                6788887777667776  233 5577776643  57888888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	644
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-13
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-07
1uoh_A	226	Human Gankyrin Length = 226		9e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-05
4auq_B	62	Structure Of Birc7-Ubch5b-Ub Complex. Length = 62		1e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		2e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-04

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN +D +  TP+H A  +G  EI ++LL +  +VN   ++  G+  L+ A  
Sbjct: 20  ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN--AKDKDGYTPLHLAAR 77
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++    K  DG+TPLH+A    H+EIVE+L+ K   ++NA D   
Sbjct: 78  EGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFG 134
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +TP   A+ +G   +   L
Sbjct: 135 KTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
           K  DG+TPLH+A    H+EIVE+L+ K   ++NA D    TPL  A  +G   ++  L+ 
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 264 RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSN 313
               ++ +D DG   LH              RE  + I E  L  G   N
Sbjct: 90  AGADVNAKDKDGYTPLHL-----------AAREGHLEIVEVLLKAGADVN 128

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN +D +  TP+H A  +G  EI ++LL +  +VN   ++  G+  L+ A  
Sbjct: 20  ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN--AKDKDGYTPLHLAAR 77
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++    K  DG+TPLH+A    H+EIVE+L+ K   ++NA D   
Sbjct: 78  EGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFG 134
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +TP   A+  G   +   L
Sbjct: 135 KTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
           K  DG+TPLH+A    H+EIVE+L+ K   ++NA D    TPL  A  +G   ++  L+ 
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 264 RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSN 313
               ++ +D DG   LH              RE  + I E  L  G   N
Sbjct: 90  AGADVNAKDKDGYTPLHL-----------AAREGHLEIVEVLLKAGADVN 128

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           L+ NG +VN  D++  TP+H A  +G +EI  LL+S   +VN   ++S G   L+YA   
Sbjct: 23  LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN--AKDSDGRTPLHYAAKE 80
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           G+ ++ +  L +++      K SDG TPLH A    H EIV+LL+ K   ++N  D   R
Sbjct: 81  GHKEIVK--LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK-GADVNTSDSDGR 137
Query: 244 TPLMAAVGQGQTSVINYL 261
           TPL  A   G   ++  L
Sbjct: 138 TPLDLAREHGNEEIVKLL 155

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN +D++  TP+H A  KG  EI  +LL H  +VN    +  G   L+ A L
Sbjct: 32  ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN--AADKMGDTPLHLAAL 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            G++++ E +L   +N A V  T   GFTPLH+A    H+EIVE+L+ KY  ++NA D  
Sbjct: 90  YGHLEIVEVLL---KNGADVNATDTYGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
            +T    ++  G   +   L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V    D G TPLH+A    H+EIVE+L+ K+  ++NA D    TPL  
Sbjct: 28  DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADKMGDTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           A   G   ++  L+     ++  D  G   LH 
Sbjct: 87  AALYGHLEIVEVLLKNGADVNATDTYGFTPLHL 119

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           L+ NG +VN  D++  TP+H A   G +E+  LL+S   +VN   ++S G   L++A   
Sbjct: 23  LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN--AKDSDGRTPLHHAAEN 80
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           G+ +V +  L +++      K SDG TPLH A  N H E+V+LL+ K   ++N  D   R
Sbjct: 81  GHKEVVK--LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGR 137
Query: 244 TPLMAAVGQGQTSVINYL 261
           TPL  A   G   V+  L
Sbjct: 138 TPLDLAREHGNEEVVKLL 155

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D+N  TP+H A A G  E +++LL +  +VN    +S G   L+ A  
Sbjct: 24  ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN--ASDSAGITPLHLAAY 81
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++    +   G+TPLH+A  +  +EIVE+L+ K+  ++NA D   
Sbjct: 82  DGHLEIVEVLLKHGADVNAYDRA--GWTPLHLAALSGQLEIVEVLL-KHGADVNAQDALG 138
Query: 243 RTPLMAAVGQGQTSVINYL 261
            T    ++ QGQ  +   L
Sbjct: 139 LTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V  T D G TPLH+A  N  +EIVE+L+ K   ++NA D    TPL  
Sbjct: 20  DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHL 78
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           A   G   ++  L+     ++  D  G   LH 
Sbjct: 79  AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL 111

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL NG + N  D++  TP+H A   G +EI  LLLS    +   ++S G   L+YA   G
Sbjct: 23  LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAENG 81
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
           + ++ +  L L++      K SDG TPLH A  N H EIV+LL+ K   + N  D   RT
Sbjct: 82  HKEIVK--LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK-GADPNTSDSDGRT 138
Query: 245 PLMAAVGQGQTSVINYL 261
           PL  A   G   ++  L
Sbjct: 139 PLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD 265
           SDG TPLH A  N H EIV+LL+ K   + NA D   RTPL  A   G   ++  L+ + 
Sbjct: 35  SDGRTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 93
Query: 266 VALDIQDIDGNGLLHF 281
              + +D DG   LH+
Sbjct: 94  ADPNAKDSDGRTPLHY 109

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN +D +  TP+H A  +G  EI ++LL +  +VN   ++  G+  L+ A  
Sbjct: 32  ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN--AKDKDGYTPLHLAAR 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++    K  DG+TPLH+A    H+EIVE+L+ K   ++NA D   
Sbjct: 90  EGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
           K  DG+TPLH+A    H+EIVE+L+ K   ++NA D    TPL  A  +G   ++  L+ 
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 264 RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSN 313
               ++ +D DG   LH              RE  + I E  L  G   N
Sbjct: 102 AGADVNAKDKDGYTPLHL-----------AAREGHLEIVEVLLKAGADVN 140

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +L+ NG +VN  DN   TP+H A   G  EI  +LL H   ++   +  GF  L+ A + 
Sbjct: 32  ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH-GADVDAADVYGFTPLHLAAMT 90
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           G++++ E +L    ++     T  G TPLH+A    H+EIVE+L+ KY  ++NA D   +
Sbjct: 91  GHLEIVEVLLKYGADVNAFDMT--GSTPLHLAADEGHLEIVEVLL-KYGADVNAQDKFGK 147
Query: 244 TPLMAAVGQG 253
           T    ++  G
Sbjct: 148 TAFDISIDNG 157

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G TPLH+A  + H+EIVE+L+ K+  +++A D+   TPL  A   G   ++  L+     
Sbjct: 47  GLTPLHLAAVSGHLEIVEVLL-KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 268 LDIQDIDGNGLLHF 281
           ++  D+ G+  LH 
Sbjct: 106 VNAFDMTGSTPLHL 119

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL NG +VN  D++  TP+H A   G +E+  LLLS    +   ++S G   L+ A   G
Sbjct: 23  LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENG 81
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
           + +V +  L L++      K SDG TPLH+A  N H E+V+LL+ +   + N  D   RT
Sbjct: 82  HKEVVK--LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNTSDSDGRT 138
Query: 245 PLMAAVGQGQTSVINYL 261
           PL  A   G   V+  L
Sbjct: 139 PLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD 265
           SDG TPLH+A  N H E+V+LL+ +   + NA D   +TPL  A   G   V+  L+ + 
Sbjct: 35  SDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 266 VALDIQDIDGNGLLHF 281
              + +D DG   LH 
Sbjct: 94  ADPNAKDSDGKTPLHL 109

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D    TP+H A   G  EI  +LL +  +VN +  ++ G   L+ A  
Sbjct: 32  ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW--DNYGATPLHLAAD 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++    K  +GFTPLH+A ++ H+EIVE+L+ KY  ++NA D   
Sbjct: 90  NGHLEIVEVLLKHGADVNA--KDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G TPLH+A    H+EIVE+L+ KY  ++NA D    TPL  A   G   ++  L+     
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 268 LDIQDIDGNGLLHF 281
           ++ +D +G   LH 
Sbjct: 106 VNAKDYEGFTPLHL 119

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D+   TP+H A   G  EI  +LL H  +VN                 
Sbjct: 32  ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN----------------- 74
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
                                + +DG+TPLH+A  N H+EIVE+L+ KY  ++NA D   
Sbjct: 75  --------------------ARDTDGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYG 113
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQD 272
            TPL  A  +G   ++  L+     ++ QD
Sbjct: 114 LTPLHLAADRGHLEIVEVLLKHGADVNAQD 143

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V    D G TPLH+A +  H EIVE+L+ K+  ++NA D    TPL  
Sbjct: 28  DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL-KHGADVNARDTDGWTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           A   G   ++  L+     ++ QD  G   LH 
Sbjct: 87  AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHL 119

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D    TP+H  V  G  E I++LL    +VN    +  G+  L+ A  
Sbjct: 32  ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN--ASDKSGWTPLHLAAY 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
           RG++++ E +L    ++  +     G+TPLH+A  + H+EIVE+L+ KY  ++NA D   
Sbjct: 90  RGHLEIVEVLLKYGADVNAM--DYQGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G TPLH+   N H+EI+E+L+ KY  ++NA D    TPL  A  +G   ++  L+     
Sbjct: 47  GITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 268 LDIQDIDGNGLLHF 281
           ++  D  G   LH 
Sbjct: 106 VNAMDYQGYTPLHL 119

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN +D    TP+H A   G  EI ++LL +  +VN   ++S G   L+ A  
Sbjct: 32  ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA--KDSLGVTPLHLAAR 89
Query: 183 RGNMKVTEKILALNRNLATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
           RG++++ E +L   +N A V  + S GFTPLH+A    H+EIVE+L+ K   ++NA D  
Sbjct: 90  RGHLEIVEVLL---KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
            +T    ++  G   +   L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G+TPLH+A    H+EIVE+L+ K   ++NA D    TPL  A  +G   ++  L+     
Sbjct: 47  GWTPLHLAAHFGHLEIVEVLL-KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 268 LDIQDIDGNGLLHF 281
           ++  D  G   LH 
Sbjct: 106 VNASDSHGFTPLHL 119

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +L+ NG +VN  DN   TP+H A   G  EI  +LL H   ++   +  G+  L+ A   
Sbjct: 32  ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH-GADVDASDVFGYTPLHLAAYW 90
Query: 184 GNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
           G++++ E +L   +N A V    SDG TPLH+A    ++EIVE+L+ K+  ++NA D   
Sbjct: 91  GHLEIVEVLL---KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL-KHGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G TPLH+A ++ H+EIVE+L+ K+  +++A D+   TPL  A   G   ++  L+     
Sbjct: 47  GTTPLHLAAYSGHLEIVEVLL-KHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 268 LDIQDIDGNGLLHF 281
           ++  D DG   LH 
Sbjct: 106 VNAMDSDGMTPLHL 119

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN +D   DTP+H A   G  EI ++LL +  +VN    +  G   L+ A  
Sbjct: 32  ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL--DFSGSTPLHLAAK 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
           RG++++ E +L    ++      + G TPLH+A    H+EIVE+L+ KY  ++NA D   
Sbjct: 90  RGHLEIVEVLLKYGADVNA--DDTIGSTPLHLAADTGHLEIVEVLL-KYGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G TPLH+A    H+EIVE+L+ K   ++NALD    TPL  A  +G   ++  L+     
Sbjct: 47  GDTPLHLAARVGHLEIVEVLL-KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 268 LDIQDIDGNGLLHF 281
           ++  D  G+  LH 
Sbjct: 106 VNADDTIGSTPLHL 119

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D+   TP+H A   G  EI ++LL +  +VN   ++S G   L+ A  
Sbjct: 32  ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA--DDSLGVTPLHLAAD 89
Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
           RG+++V E +L   +N A V     +GFTPLH+A    H+EIVE+L+ K+  ++NA D  
Sbjct: 90  RGHLEVVEVLL---KNGADVNANDHNGFTPLHLAANIGHLEIVEVLL-KHGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
            +T    ++  G   +   L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G+TPLH+A +  H+EIVE+L+ K   ++NA D    TPL  A  +G   V+  L+     
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLL-KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 268 LDIQDIDGNGLLHF 281
           ++  D +G   LH 
Sbjct: 106 VNANDHNGFTPLHL 119

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  DN+  TP+H A + G  EI ++LL +  +VN    +  G   L+ A  
Sbjct: 32  ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN--ASDLTGITPLHLAAA 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++      +DG TPLH+A    H+EIVE+L+ K+  ++NA D   
Sbjct: 90  TGHLEIVEVLLKHGADVNAY--DNDGHTPLHLAAKYGHLEIVEVLL-KHGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 190 EKILALNRNLATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V  T +DG+TPLH+A  N H+EIVE+L+ K   ++NA DL   TPL  
Sbjct: 28  DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDLTGITPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           A   G   ++  L+     ++  D DG+  LH 
Sbjct: 87  AAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL 119

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D    TP+H A   G  EI ++LL +  +VN Y  ++ G   L+ A  
Sbjct: 32  ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLGSTPLHLAAH 89
Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            G++++ E +L   +N A V  K  +G TPLH+A    H+EIVE+L+ KY  ++NA D  
Sbjct: 90  FGHLEIVEVLL---KNGADVNAKDDNGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
            +T    ++  G   +   L
Sbjct: 146 GKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G+TPLH+A +  H+EIVE+L+ K   ++NA D    TPL  A   G   ++  L+     
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 268 LDIQDIDGNGLLHF 281
           ++ +D +G   LH 
Sbjct: 106 VNAKDDNGITPLHL 119

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 138 NQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN 196
           N  TP+H A   G  E ++LLL +  +VN   ++  G   L+ A   G+++V + +L   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 197 RNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTS 256
            ++    K  +G TPLH+A  N H+E+V+LL+E    ++NA D   RTPL  A   G   
Sbjct: 59  ADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLE 115
Query: 257 VINYLM 262
           V+  L+
Sbjct: 116 VVKLLL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
           +G TPLH+A  N H+E+V+LL+E    ++NA D   RTPL  A   G   V+  L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 267 ALDIQDIDGNGLLHF 281
            ++ +D +G   LH 
Sbjct: 60  DVNAKDKNGRTPLHL 74

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D +  TP+H A   G  EI  +LL H  +VN    +  G   L+ A L
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIXGSTPLHLAAL 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++  V    D  TPLH+A    H+EIVE+L+ K+  ++NA D   
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGD--TPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 190 EKILALNRNLATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V  T + G TPLH+A    H+EIVE+L+ K+  ++NA+D+   TPL  
Sbjct: 28  DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIXGSTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI 284
           A   G   ++  L+     ++  D  G+  LH   I
Sbjct: 87  AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI 122

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D +  TP+H A   G  EI  +LL H  +VN    +  G   L+ A L
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIMGSTPLHLAAL 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++  V    D  TPLH+A    H+EIVE+L+ K+  ++NA D   
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGD--TPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 190 EKILALNRNLATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V  T + G TPLH+A    H+EIVE+L+ K+  ++NA+D+   TPL  
Sbjct: 28  DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIMGSTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI 284
           A   G   ++  L+     ++  D  G+  LH   I
Sbjct: 87  AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI 122

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 118/273 (43%), Gaps = 35/273 (12%)
Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI----NSHVSG 57
           T LHI A +G VE +  LL + A        G T LH AA   K    ++    ++H + 
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 58  ANR---SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAEC 114
           A +   +  H+    H  +   K+  P       P +P  N  + P              
Sbjct: 175 AGKNGLTPLHV-AVHHNNLDIVKLLLPRG---GSPHSPAWN-GYTPLH------------ 217
Query: 115 SGILIKQDFV-----LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE 169
             I  KQ+ V     LL+ G + N +     TP+H A  +G  E+  LLLS  + N  L 
Sbjct: 218 --IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLG 274
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
           N  G   L+     G++ V + ++     +     T  G+TPLHVA    +I++V+ L++
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI--KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
            ++ ++NA      +PL  A  QG T ++  L+
Sbjct: 333 -HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL+N   VN +  +  TP+H A   G   +  LLL +   N  L  + G   L+ A   G
Sbjct: 66  LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREG 124
Query: 185 NMKVTEKILAL-NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           ++   E +LAL  +  +    T  GFTPLHVA     + + ELL+E+   + NA      
Sbjct: 125 HV---ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGL 180
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYE 303
           TPL  AV      ++  L+ R  +      +G   LH              ++  V +  
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI-----------AAKQNQVEVAR 229
Query: 304 EYLSVGGPSN 313
             L  GG +N
Sbjct: 230 SLLQYGGSAN 239

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN +D +  TP+H A   G  EI ++LL +  +VN    +  G   L  A L
Sbjct: 32  ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV--DHAGMTPLRLAAL 89
Query: 183 RGNMKVTEKILALNRNLATVPKTS-DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            G++++ E +L   +N A V     +G TPLH+A    H+EIVE+L+ K   ++NA D  
Sbjct: 90  FGHLEIVEVLL---KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
            +T    ++  G   +   L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD 265
           + G+TPLH+A FN H+EIVE+L+ K   ++NA+D    TPL  A   G   ++  L+   
Sbjct: 45  ASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Query: 266 VALDIQDIDGNGLLHF 281
             ++  D++G+  LH 
Sbjct: 104 ADVNANDMEGHTPLHL 119

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+ NG + N  D+   TP+H A A G  EI ++LL +  +VN    ++ G   L+ A  
Sbjct: 20  ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV--DTNGTTPLHLAAS 77
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G++++ E +L    ++    K + G TPL++A +  H+EIVE+L+ K+  ++NA D   
Sbjct: 78  LGHLEIVEVLLKYGADVNA--KDATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFG 134
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 135 KTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G TPLH+A    H+EIVE+L+ +   ++NA+D    TPL  A   G   ++  L+     
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 268 LDIQDIDG 275
           ++ +D  G
Sbjct: 94  VNAKDATG 101

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
           D +  T +H A + G  EI   LL    V +  ++  G++ L+ A   G  ++ + +L  
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
              +  V    +G TPLH A   +  EI  +L+E    N +A D  + T +  A  +G  
Sbjct: 97  GAQVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNL 153
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
            +I+ L+    + +IQD +GN  LH    ++   +  +   +   IY E
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
           D +  T +H A + G  EI   LL    V +  ++  G++ L+ A   G  ++ + +L  
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
              +  V    +G TPLH A   +  EI  +L+E    N +A D  + T +  A  +G  
Sbjct: 96  GAQVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNL 152
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
            +I+ L+    + +IQD +GN  LH    ++   +  +   +   IY E
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 128 NGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMK 187
           +G  VN+   +  +P+H A   G  ++  LLL H   N    N+     L+ A  +G+ +
Sbjct: 75  SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAVPLHLACQQGHFQ 133
Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
           V + +  L+ N     K   G TPL  AC   H E+V LL++ +  +INA + K  T L 
Sbjct: 134 VVKCL--LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALH 190
Query: 248 AAVGQGQTSVINYLMLRDVALDI 270
            AV +    V+  L+L   ++ +
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQV 213

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
           G + L+ A L G   +   +L    N     + +D   PLH+AC   H ++V+ L++   
Sbjct: 86  GSSPLHVAALHGRADLIPLLLKHGANAGA--RNADQAVPLHLACQQGHFQVVKCLLDS-N 142
Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFY 289
              N  DL   TPL+ A   G   ++  L+    +++  +  GN  LH   I+K+ +
Sbjct: 143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
           +G TPLH+A  N H+E+V+LL+E    ++NA D   RTPL  A   G   V+  L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 267 ALDIQDIDGNGLLHF 281
            ++ +D +G   LH 
Sbjct: 60  DVNAKDKNGRTPLHL 74

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
           +E+++L+ +  +VN   ++  G   L  A   G++++ E +L    ++  V     GFTP
Sbjct: 28  DEVRILMANGADVNA--KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI--GFTP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
           LH+A F  H+EI E+L+ K+  ++NA D   +T    ++G G   +   L
Sbjct: 84  LHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL---SHPEVNLYLENSKGFNILNYA 180
            LL  G +VN  + N  TP+H A +K   EI ++LL   ++P+   + + +     ++ A
Sbjct: 91  ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA----MHRA 146
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
             +GN+K+   +L      +T  + ++G TPLH+AC  + +E  + LV +   +I   + 
Sbjct: 147 AAKGNLKMVHILLFYKA--STNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENK 203
Query: 241 KKRTPLMAAVG 251
           +++TPL  A G
Sbjct: 204 EEKTPLQVAKG 214

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
           D +  T +H A + G  EI   LL    V +  ++  G++ L+ A   G  ++ + +L  
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
             ++  V    +G TPLH A   +  EI  +L+E    N +A D    T +  A  +G  
Sbjct: 96  GAHVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNL 152
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
            +++ L+    + +IQD +GN  LH    ++   +      +   IY E
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL---SHPEVNLYLENSKGFNILNYA 180
            LL  G +VN  + N  TP+H A +K   EI ++LL   ++P+   + + +     ++ A
Sbjct: 91  ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA----MHRA 146
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
             +GN+K+   +L      +T  + ++G TPLH+AC  + +E  + LV +   +I   + 
Sbjct: 147 AAKGNLKMVHILLFYKA--STNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENK 203
Query: 241 KKRTPLMAAVG 251
           +++TPL  A G
Sbjct: 204 EEKTPLQVAKG 214

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
           D +  T +H A + G  EI   LL    V +  ++  G++ L+ A   G  ++ + +L  
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
             ++  V    +G TPLH A   +  EI  +L+E    N +A D    T +  A  +G  
Sbjct: 96  GAHVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNL 152
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
            +++ L+    + +IQD +GN  LH    ++   +      +   IY E
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G TPLH+A  NDH+EIVE+L+ K   ++NA+D    TPL      G   ++  L+     
Sbjct: 47  GLTPLHLAAMNDHLEIVEVLL-KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Query: 268 LDIQD 272
           ++ QD
Sbjct: 106 VNAQD 110

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 157 LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVAC 216
           L L + E +L   +  GF+ L++A   G   V E ++     +  + +  D  TPLH+A 
Sbjct: 23  LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAA 80
Query: 217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
            + H +IV+ L++ YK +INA++     PL  A   GQ  V             +D+  N
Sbjct: 81  SHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQV------------AEDLVAN 127
Query: 277 GLLHFLFIKKNFYKTPITREKSVPIYE 303
           G L  + I   + + P+ + K+ P+ E
Sbjct: 128 GAL--VSICNKYGEMPVDKAKA-PLRE 151

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V    D G TPLH+A    H+EIVE+L+ K+  ++NA D+  RTPL  
Sbjct: 28  DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNARDIWGRTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQD 272
           A   G   ++  L+     ++ QD
Sbjct: 87  AATVGHLEIVEVLLEYGADVNAQD 110

>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex. Length = 62

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 468 LESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTLKFCHMCRKLIEQRINISRA 526
           +E+++  ++E  TC +C++R  + +F+ CGH  C  CA  L+ C +CR  +  R+   R 
Sbjct: 3   VEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRAPVRSRV---RT 59
Query: 527 FVS 529
           F+S
Sbjct: 60  FLS 62

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 28/181 (15%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH--------------------PE 163
           +LL++G  VN  D  Q TP+H+A +K   E+  LLLSH                    PE
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168
Query: 164 VNLYLENS-KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH-- 220
           +   L    KG ++L  A    ++   +K LAL       P++ +  T LH A  + H  
Sbjct: 169 LRERLTYEFKGHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHE--TALHCAVASLHPK 225
Query: 221 -IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
             ++ ELL+ K   N+N  +    TPL  A  +    V+  L      ++  D  G   L
Sbjct: 226 RKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Query: 280 H 280
           H
Sbjct: 285 H 285

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V    D G TPLH+A    H+EIVE+L+ K+  ++NA D+  RTPL  
Sbjct: 28  DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDIWGRTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQD 272
           A   G   ++  L+     ++ QD
Sbjct: 87  AATVGHLEIVEVLLEYGADVNAQD 110

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 40/211 (18%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV--- 181
           L+ NG N+N  DN    P+H A + G+ +I   L+S    ++   NS+G   L+ A    
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEA 150
Query: 182 ---------------LRGNMKVTEKIL------ALNR-NLATVPKTSDGFTPLHVACFND 219
                          +    K  E+I+       LN  ++  V     G T LHVA    
Sbjct: 151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210
Query: 220 HIEIVELLVE-KYKVNINALDLKKRTPLMAAVGQGQTSVINYLM-----------LRDVA 267
           + E+++LL++ +Y VNI   D    TPL AA   G+      L+           +   A
Sbjct: 211 YTEVLKLLIQARYDVNIK--DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268
Query: 268 LDIQDIDGNGLLHFLFIKKNFYKTPITREKS 298
            D+ D D  G L  L  K+N   +    +KS
Sbjct: 269 FDVADEDILGYLEELQKKQNLLHSEKREKKS 299

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 7/111 (6%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD-GFT 210
           +E+++L  +  +VN    +  G   L+ A + G++++ E +L   +N A V  T + G T
Sbjct: 28  DEVRILTANGADVNA--NDYWGHTPLHLAAMLGHLEIVEVLL---KNGADVNATGNTGRT 82
Query: 211 PLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
           PLH+A + DH+EIVE+L+ K+  ++NA D   +T    ++  G   +   L
Sbjct: 83  PLHLAAWADHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD--GFTPLHVACFNDHIEIVELL 227
           N +G  +L+ A ++G++   E +L    +    P   D  G+TPLH AC + H+++VELL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSD----PNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
           ++ +K  +N    +  +PL  A   G   ++  L+
Sbjct: 63  LQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
           +++  L  N A V    D G TPLH+A    H+EIVE+L+ K+  ++NA D   RTPL  
Sbjct: 28  DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQD 272
           A   G   ++  L+     ++ QD
Sbjct: 87  AATVGHLEIVEVLLEYGADVNAQD 110

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
           DG TPLH+A    H+EIVE+L+ KY  ++NA D    TPL  A  +G   ++  L+    
Sbjct: 46  DGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 267 ALDIQD 272
            ++ QD
Sbjct: 105 DVNAQD 110

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEK 191
           +++ ++  D  + +A   G  E    L +   VN      +    L++A     + V E 
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 192 ILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG 251
           +L    ++    K   G  PLH AC   H E+ ELLV K+   +N  DL K TPL  A  
Sbjct: 65  LLQHGADVHA--KDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAA 121
Query: 252 QGQTSVINYLMLRDVALDIQDIDGN 276
           +G+  +   L+        ++ DGN
Sbjct: 122 KGKYEICKLLLQHGADPTKKNRDGN 146

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 157 LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVAC 216
           L L + E +L   +  GF+ L++A   G   V E ++     +  + +  D  TPLH+A 
Sbjct: 18  LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAA 75
Query: 217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
            + H +IV+ L++ YK +INA++     PL  A   GQ  V             +D+  N
Sbjct: 76  SHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQV------------AEDLVAN 122
Query: 277 GLLHFLFIKKNFYKTPITREKSVPIYE 303
           G L  + I   + + P+ + K+ P+ E
Sbjct: 123 GAL--VSICNKYGEMPVDKAKA-PLRE 146

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           L++A     + V E +L    ++    K   G  PLH AC   H E+ ELLV K+   +N
Sbjct: 48  LHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNACSYGHYEVAELLV-KHGAVVN 104
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
             DL K TPL  A  +G+  +   L+        ++ DGN
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 210 TPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD 269
           +PLH A    H++I  +LV+    NI+     +RTPLM A        + YL+     +D
Sbjct: 13  SPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 270 IQDIDGNGLLHFLFIKKNFYKT 291
            +D +G+  LH L  KK  Y+ 
Sbjct: 72  PKDAEGSTCLH-LAAKKGHYEV 92

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           L++A     + V E +L    ++    K   G  PLH AC   H E+ ELLV K+   +N
Sbjct: 46  LHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNACSYGHYEVAELLV-KHGAVVN 102
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
             DL K TPL  A  +G+  +   L+        ++ DGN
Sbjct: 103 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 142 PMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL--NRN 198
           P+H A  +  F ++Q LL S P + L  ++  G   L+++V     ++T  +L+   N N
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEK-YKVNINALDLKKRTPLMAAVGQGQTSV 257
           L   P  S G+TP H+AC   ++E+V+ L ++  K ++N +  +  T L  AVG+    V
Sbjct: 64  LDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 258 INYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSV 299
             +L+    ++ I+D               F + P+ R  SV
Sbjct: 123 SQFLIENGASVRIKD--------------KFNQIPLHRAASV 150

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 142 PMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL--NRN 198
           P+H A  +  F ++Q LL S P + L  ++  G   L+++V     ++T  +L+   N N
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEK-YKVNINALDLKKRTPLMAAVGQGQTSV 257
           L   P  S G+TP H+AC   ++E+V+ L ++  K ++N +  +  T L  AVG+    V
Sbjct: 64  LDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 258 INYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSV 299
             +L+    ++ I+D               F + P+ R  SV
Sbjct: 123 SQFLIENGASVRIKD--------------KFNQIPLHRAASV 150

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 142 PMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL--NRN 198
           P+H A  +  F ++Q LL S P + L  ++  G   L+++V     ++T  +L+   N N
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEK-YKVNINALDLKKRTPLMAAVGQGQTSV 257
           L   P  S G+TP H+AC   ++E+V+ L ++  K ++N +  +  T L  AVG+    V
Sbjct: 64  LDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 258 INYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSV 299
             +L+    ++ I+D               F + P+ R  SV
Sbjct: 123 SQFLIENGASVRIKD--------------KFNQIPLHRAASV 150

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 468 LESKISEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINISR 525
           LE ++  ++E  TC +CM++  + +F+ CGH   C  CA +L+ C +CR +I+  +   R
Sbjct: 285 LEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTV---R 341
Query: 526 AFVS 529
            F+S
Sbjct: 342 TFLS 345

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 127 RNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNM 186
           + G  ++I +N + TP+H AV      +  LL++     + L+   G    + A    + 
Sbjct: 34  QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLACEHRSP 92
Query: 187 KVTEKIL--ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK-R 243
                +L  A    L    +  DG T LHVA   +  E V+LL+E+   +I+A+D+K  R
Sbjct: 93  TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGR 151
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
           +PL+ AV     S++  L+     ++ Q   G+  LH
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 188

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 39/139 (28%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN  D   +TP+H A      EI  +LL H  +VN +               
Sbjct: 32  ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH--------------- 76
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
                                  +DG TPLH+A    H+EIVE+L+ K+  ++NA D   
Sbjct: 77  ----------------------DNDGSTPLHLAALFGHLEIVEVLL-KHGADVNAQDKFG 113
Query: 243 RTPLMAAVGQGQTSVINYL 261
           +T    ++  G   +   L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
           G TPLH+A   DH+EIVE+L+ K+  ++NA D    TPL  A   G   ++  L+     
Sbjct: 47  GNTPLHLAADYDHLEIVEVLL-KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Query: 268 LDIQD 272
           ++ QD
Sbjct: 106 VNAQD 110

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL  G + N QDN   TP+H AVA     +  +LL +   NL      G   L  A    
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
              + E ++  + ++     +  G T LH A   ++ E V +L+  +  N +A D K  T
Sbjct: 130 IEGMVEDLITADADINAADNS--GKTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDET 186
Query: 245 PLMAAVGQG 253
           PL  A  +G
Sbjct: 187 PLFLAAREG 195

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
           I Q+   LRN      +D+   TP+  A   G E     L+ + +  L  ++ +G   L 
Sbjct: 20  INQNLDFLRN-----YRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDKDIEGSTALI 73
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
           +AV    + + EK+L+   N+ T  K   G TPL  +    + E+   L+E +  N+N  
Sbjct: 74  WAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWSIIFGYSEMSYFLLE-HGANVNDR 130
Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL 278
           +L+  TPL+ A   G++ ++  L+  ++  DI   D  GL
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLL--ELGADISARDLTGL 168

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 140 DTPMHDAVAKGF-EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRN 198
           +TP+H+A   G  EE++ LL    +VN    +  G   L+ A   G+ ++ + +LA   +
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNA--RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
           +    ++ DG TP H+A  N H EIV+LL  K   ++NA
Sbjct: 68  VNA--RSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR 264
           + DG TPLH A  N H E V+ L+ K   ++NA      TPL  A   G   ++  L+ +
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 265 DVALDIQDIDGNGLLHFLFIKKN 287
              ++ +  DGN   H    KKN
Sbjct: 65  GADVNARSKDGNTPEH--LAKKN 85

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
           TP+H A  +G   + + L+ +   +  L + +G + ++ A   G+  +   ++A  +++ 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKRTPLMAAVGQGQTSVIN 259
            + +  +G TPL  A +  H      L+  + V++N  D   K T L  AV  G T+VI+
Sbjct: 137 MMDQ--NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 260 YLMLRDVALDIQDIDGNGLLHFLFIKKNFY 289
            L+     +D Q+I G   L     +KN +
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVW 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	644
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-30
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-25
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-22
2rfa_A	232	Transient receptor potential cation channel subfa	4e-20
2rfa_A	232	Transient receptor potential cation channel subfa	2e-17
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	5e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-19
2pnn_A	273	Transient receptor potential cation channel subfa	4e-19
2pnn_A	273	Transient receptor potential cation channel subfa	6e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-04
2etb_A	256	Transient receptor potential cation channel subfam	4e-17
2etb_A	256	Transient receptor potential cation channel subfam	7e-17
2etb_A	256	Transient receptor potential cation channel subfam	3e-14
2etb_A	256	Transient receptor potential cation channel subfam	3e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-05
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	2e-15
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	3e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-05
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	5e-15
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	1e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-04
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-11
2ea5_A	68	Cell growth regulator with ring finger domain prot	5e-09
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	6e-10
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	5e-08
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	4e-05
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	6e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  123 bits (311), Expect = 2e-30
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL+ G + N+ +   +TP+H A   G  E+   LL + +  +  +       L+ A   G
Sbjct: 33  LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIG 91

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
           +  + + +L  N N      T+ G TPLH+A    H+E V  L+EK + +   +  K  T
Sbjct: 92  HTNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFT 148

Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           PL  A   G+  V   L+ RD   +    +G   LH 
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  122 bits (309), Expect = 4e-30
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +LL N  N N+      TP+H A  +G  E  L LL   E +      KGF  L+ A   
Sbjct: 98  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKY 156

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           G ++V E +L  + +        +G TPLHVA  +++++IV+LL+ +   + ++      
Sbjct: 157 GKVRVAELLLERDAHPNA--AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGY 213

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           TPL  A  Q Q  V   L+    + + + + G   LH 
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  117 bits (295), Expect = 3e-28
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           LL    + N    N  TP+H AV     +I  LLL      +       G+  L+ A  +
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS--PAWNGYTPLHIAAKQ 222

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
             ++V   +L    +     ++  G TPLH+A    H E+V LL+ K + N N  +    
Sbjct: 223 NQVEVARSLLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGL 279

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           TPL     +G   V + L+   V +D     G   LH 
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (288), Expect = 2e-27
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           LL    N N+ + +  TP+H    +G   +  +L+ H   V+       G+  L+ A   
Sbjct: 264 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA--TTRMGYTPLHVASHY 321

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           GN+K+ + +L    ++    KT  G++PLH A    H +IV LL++    + N +     
Sbjct: 322 GNIKLVKFLLQHQADVNA--KTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGT 378

Query: 244 TPLMAAVGQGQTSVINYLM--LRDVA-LDIQDIDGNGLLH 280
           TPL  A   G  SV + L     + + + + D        
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  100 bits (252), Expect = 8e-23
 Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 39/159 (24%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
            LL+ G + N +     TP+H A  +G  E+  LLL      NL                
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL---------------- 273

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
                                    G TPLH+     H+ + ++L++   V ++A     
Sbjct: 274 ---------------------GNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMG 311

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            TPL  A   G   ++ +L+     ++ +   G   LH 
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 1e-20
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 37/154 (24%)

Query: 128 NGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMK 187
            G +      +  TP+H A   G   I   LL             G +            
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQR-----------GASP----------- 40

Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
                   N             TPLH+A    H E+ + L++  K  +NA     +TPL 
Sbjct: 41  --------NV------SNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLH 85

Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            A   G T+++  L+  +   ++    G+  LH 
Sbjct: 86  CAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 119

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 4e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           T LH+ ++ G +  +  LL RGA     +   +T LH AA     +  + 
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LH+  +   ++ + +LL RG   + P   G T LH AA  N+ +  + 
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LH+ A +G  E + +LL++ A     + +G T LH  A         +
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 17/51 (33%), Positives = 22/51 (43%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LH+ A  G V    +LL R A        G T LH A   N  D +++
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LH+ ++ G ++ +  LL   A V      G + LH AA     D + +
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 2/72 (2%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
            + LH  A QG  + + +LL  GA        G T L  A                   +
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404

Query: 59  NRSRKHIYKERH 70
                  ++   
Sbjct: 405 FVLVSDKHRMSF 416

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 20/51 (39%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           +T LH  A  G    + +LL   A       AG T LH AA     + +  
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.6 bits (104), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LHI A +G VE +  LL + A        G T LH AA   K    ++
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
          +T LH+ A  G  E    LL   A V        T LH AA     + +++
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LH++A +G V   ++L+  G  V      G T LH A+       ++ 
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.3 bits (98), Expect = 7e-04
 Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE--VNLYLENSKGFNILNYA 180
           +LL+NG + N   ++  TP+  A   G+  +  +L    +    + + +    +     
Sbjct: 362 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  117 bits (296), Expect = 1e-29
 Identities = 46/265 (17%), Positives = 78/265 (29%), Gaps = 37/265 (13%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +T LH+ A  G    +  L A GA V   +  G TALH A          +        +
Sbjct: 46  QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP--RPS 103

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
                                         +     +        D    P+A  S    
Sbjct: 104 ---------------------------HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136

Query: 120 KQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNI 176
           + +           +  ++ +  TP+H AV     E+  LL     ++N   E + G   
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-PEPTCGRTP 195

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           L+ AV      V E +L    +     +   G TPL  A    +  +  LL   +     
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTA--RMYGGRTPLGSALLRPNPILARLLRA-HGAPEP 252

Query: 237 ALDLKKRTPLMAAVGQGQTSVINYL 261
                K +P  ++     +   +  
Sbjct: 253 EDGGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (279), Expect = 2e-27
 Identities = 54/296 (18%), Positives = 89/296 (30%), Gaps = 56/296 (18%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYY---PDDAGDTALHYAAFGNKPDAIQI-NSHVS 56
            T LH+         L+ LL   A   Y    +D G TALH AA   +   ++   +   
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-- 67

Query: 57  GANRSRKHIY---------KERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDML 107
           GA                 + R  T     +Q   + P+   +T +   +       D  
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC---TPDTS 124

Query: 108 DTPSAECSGILIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVN 165
             P+A  S    + +           +  ++ +  TP+H AV     E+  LL       
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA---- 180

Query: 166 LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
                  G ++        N                      G TPLH+A       ++E
Sbjct: 181 -------GADL--------NKP--------EPT--------CGRTPLHLAVEAQAASVLE 209

Query: 226 LLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           LL++    +  A     RTPL +A+ +    +   L            D       
Sbjct: 210 LLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.0 bits (206), Expect = 9e-18
 Identities = 31/216 (14%), Positives = 44/216 (20%), Gaps = 59/216 (27%)

Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSH----PEVNLYLENSKGFNILNYAVLRGNMK 187
                 + DT +H AV    E     LL        ++L                     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL--------------------- 40

Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
                           +   G T LH+A        VE L       +   +    T L 
Sbjct: 41  ----------------QNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALH 83

Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLS 307
            A      +    L+    +      D              +                 S
Sbjct: 84  LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA-----------VDS 132

Query: 308 VGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPL 343
              P NE                 L  EN +   PL
Sbjct: 133 QPNPENE------EEPRDEDWRLQLEAENYDGHTPL 162

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.9 bits (185), Expect = 5e-15
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 14/112 (12%)

Query: 124 VLLRNGCNVNIQDNNQ-DTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAV 181
           +L   G ++N  +     TP+H AV      +  LLL    +         G   L  A+
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA--RMYGGRTPLGSAL 233

Query: 182 LRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
           LR N  +   + A                D  +P   +  +   +  +   E
Sbjct: 234 LRPNPILARLLRAHGAPEPE------DGGDKLSPCSSSGSDSDSDNRDEGDE 279

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  112 bits (283), Expect = 2e-28
 Identities = 46/270 (17%), Positives = 85/270 (31%), Gaps = 57/270 (21%)

Query: 1   KTLLHILAYQGCVEEL-NILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
              LH    +    ++  +L ++ + +   D  G   LH++      +      S     
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK--ME 60

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIP-----RMNEDMLDTPSAE 113
           N +      +   T                           P      +        + E
Sbjct: 61  NVNLDDYPDDSGWT---------------------------PFHIACSVG-------NLE 86

Query: 114 CSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSK 172
               L  +         ++N   N   T +H AV K + E+   L+ +   V +  ++  
Sbjct: 87  VVKSLYDRPL-----KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKF 139

Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKY 231
               L+ A   G++K+ E +L      + V  +   G+TPL  A    H +   LLVEKY
Sbjct: 140 NQIPLHRAASVGSLKLIE-LL-CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197

Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVINYL 261
               + +D K       A+      V  + 
Sbjct: 198 GAEYDLVDNKGAKAEDVAL---NEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  107 bits (269), Expect = 2e-26
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 9/164 (5%)

Query: 124 VLLRNGCNVNIQ---DNNQDTPMHDAVAKGFEEIQLLLLSHPE-VNLYLENSKGFNILNY 179
            LL    NVN+    D++  TP H A + G  E+   L   P   +L    ++G   L+ 
Sbjct: 54  FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113

Query: 180 AVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
           AV +   +V++    L  N A+V  K      PLH A     ++++ELL    K  +N  
Sbjct: 114 AVGKKWFEVSQ---FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170

Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVA-LDIQDIDGNGLLHF 281
           D +  TPL  A+ +G       L+ +  A  D+ D  G      
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.7 bits (242), Expect = 6e-23
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 34/158 (21%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           L      +  +D +   P+H +V+    EI   LLS              N+        
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-----------MENV-------- 62

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK-YKVNINALDLKKR 243
           N+                     G+TP H+AC   ++E+V+ L ++  K ++N +  +  
Sbjct: 63  NLDDY--------------PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           T L  AVG+    V  +L+    ++ I+D      LH 
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR 146

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.8 bits (185), Expect = 3e-15
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 177 LNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
           L+ A +       +++L      + +  K  DG  PLH +      EI   L+ K   N+
Sbjct: 6   LHQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENV 62

Query: 236 NALDLKK---RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL--LHF 281
           N  D       TP   A   G   V+  L  R +  D+  I   G+  LH 
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.5 bits (148), Expect = 2e-10
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 208 GFTPLHVACFNDHI-EIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR-- 264
              PLH AC  +   ++ ELL  K    +   D   R PL  +V      + ++L+ +  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 265 DV-ALDIQDIDGNGLLHF 281
           +V   D  D  G    H 
Sbjct: 61  NVNLDDYPDDSGWTPFHI 78

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  111 bits (280), Expect = 3e-28
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 15/167 (8%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +L      V+  D   +TP++ AV     EI   L+    ++NL  +NS   +   YA  
Sbjct: 24  ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL--QNSISDSPYLYAGA 81

Query: 183 RGNMKVTEKIL---ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
           +G  ++   +L     + N         G   L  A    HI+ V+LL+E  + +I+  +
Sbjct: 82  QGRTEILAYMLKHATPDLNK----HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137

Query: 240 LKKRTPLMAAV-----GQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
               T L+ AV      Q    ++  LM       I+D  G   + +
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  102 bits (257), Expect = 3e-25
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 9/144 (6%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            L+  G ++N+Q++  D+P   A A+G  EI   +L H   +L   N  G N L  A  +
Sbjct: 57  ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

Query: 184 GNMKVTEKILALNRNLATV-PKTSDGFTPLHVACF-----NDHIEIVELLVEKYKVNINA 237
           G++    K+L L      +  +   G+T L  A         + +IV+LL+E    + + 
Sbjct: 117 GHIDNV-KLL-LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSI 173

Query: 238 LDLKKRTPLMAAVGQGQTSVINYL 261
            D   RT +  A  +G T +   L
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 92.1 bits (230), Expect = 1e-21
 Identities = 22/153 (14%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 134 IQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKIL 193
           ++       +  A  +  ++++ +L       +   +++G   LN AV   ++++ + ++
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 194 A----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAA 249
                +N       + S   +P   A      EI+  +++    ++N  +      L+ A
Sbjct: 60  DRGADINL------QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPA 113

Query: 250 VGQGQTSVINYLMLRDVA-LDIQDIDGNGLLHF 281
             +G    +  L+      +D Q+  G   L  
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.5 bits (179), Expect = 8e-15
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 20/117 (17%)

Query: 125 LLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +L++   ++N  +      +  A  KG  +   LLL     ++  +N  G+  L  AV  
Sbjct: 91  MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150

Query: 184 GNMKVTEKILALNRNLATV-----------PKTSDGFTPLHVACFNDHIEIVELLVE 229
                             V            K + G T +  A    + EI ++L +
Sbjct: 151 REGN--------QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 52.8 bits (128), Expect = 4e-08
 Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 37/163 (22%)

Query: 1   KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
            +       QG  E L  +L      +   +  G  AL  AA     D +++        
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED-GRE 131

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
           +   ++ +                        T ++    +   N+   D    +   +L
Sbjct: 132 DIDFQNDFG----------------------YTALIEAVGLREGNQLYQDI--VK---LL 164

Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
           ++       NG + +I+DN+  T M  A  KG+ EI  +L  +
Sbjct: 165 ME-------NGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
            LL     +   +   IL      V   D  G+T L+ A   N  +  +  I     GA
Sbjct: 7  GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-DR--GA 63

Query: 59 N 59
          +
Sbjct: 64 D 64

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGN 44
           T L+I  +   +E    L+ RGA +   +   D+   YA    
Sbjct: 40 NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (288), Expect = 8e-28
 Identities = 51/365 (13%), Positives = 114/365 (31%), Gaps = 76/365 (20%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
            T LH+    GCV+    L + G         G   +H A   NK D +   +       
Sbjct: 54  CTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEG---AK 108

Query: 59  NRSRK--HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG 116
            R +    +  E       E  +  S++   + +T +    +   +  + L+    +   
Sbjct: 109 ERGQMPESLLNECDER---EVNEIGSHVKHCKGQTALH---WCVGLGPEYLEM--IKI-- 158

Query: 117 ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE----VNLYLENSK 172
                   L++ G +   +D   +TP+  A+     E   L++        + L   N +
Sbjct: 159 --------LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210

Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK-- 230
           G + L++A+L     V  + + +  ++    + ++   PL+++     + + + L++K  
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNM--EDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 231 ----------YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
                         +    +     + AA    +  V+  L  +   +      G G   
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAV 328

Query: 281 FLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQ 340
               K                                  AV    +   AP+   + +R 
Sbjct: 329 KRKKKAA-------------------------------PAVKRMKLAPSAPVRTRSRSRA 357

Query: 341 KPLDL 345
           +   +
Sbjct: 358 RSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.4 bits (246), Expect = 2e-22
 Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 29/176 (16%)

Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNMK 187
             N    D+     +H A  KG  +    L+       +  +N  G   L+ A   G + 
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVD 67

Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK----------------- 230
             +  L  +           G  P+H+A   +  ++V  LVE                  
Sbjct: 68  TAK-YL-ASVG-EVH-SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE 123

Query: 231 ---YKVNINALDLKKRTPLMAAV--GQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
               ++  +    K +T L   V  G     +I  L+    +   +D      L  
Sbjct: 124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.3 bits (186), Expect = 9e-15
 Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 10/99 (10%)

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G+M    K+   NR         +    +HVA      + V  L+E   V+    +   
Sbjct: 2   PGSMTDFPKL---NRIK----SDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFG 53

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            T L  A   G      YL             G   +H 
Sbjct: 54  CTALHLACKFGCVDTAKYLASVGE--VHSLWHGQKPIHL 90

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 3e-14
 Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 11/124 (8%)

Query: 158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACF 217
           +   P++N    + +    ++ A  +G      +++    +     +   G T LH+AC 
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI--QNRFGCTALHLACK 62

Query: 218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
              ++  + L        +      + P+  AV   +T ++  L      ++     G  
Sbjct: 63  FGCVDTAKYLASV-GEVHSLWH--GQKPIHLAVMANKTDLVVAL------VEGAKERGQM 113

Query: 278 LLHF 281
               
Sbjct: 114 PESL 117

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 14/181 (7%), Positives = 36/181 (19%), Gaps = 30/181 (16%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            + LH        +     +  G  V   D+     L+ +         +          
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK--TDV 269

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
              +        TV            +V                   +   +      ++
Sbjct: 270 FLIQACPYHNGTTV---------LPDRVVWLDF--------------VPAAADPSKQEVL 306

Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
           +   +L      V    N           K    ++ + L+     +   +         
Sbjct: 307 Q---LLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSRARSSAV 362

Query: 180 A 180
           +
Sbjct: 363 S 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 5/89 (5%)

Query: 128 NGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNM 186
           NG  V          +  A     +E+  LL     EV      + G         +   
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR--SLNTGAGGAVKRKKKAAP 336

Query: 187 KVTEKILALNRNLATVPKTSDGFTPLHVA 215
            V    LA +  + T  ++        V+
Sbjct: 337 AVKRMKLAPSAPVRT--RSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
             +H+ A +G  +E+  L+  G      +  G TALH A      D  +   S   G  
Sbjct: 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV--GEV 78

Query: 60 RSRKH 64
           S  H
Sbjct: 79 HSLWH 83

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  109 bits (275), Expect = 2e-27
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 10/158 (6%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           L     ++    +  DT      +KG   +       P   +  +     N L+ A  RG
Sbjct: 31  LYIEEGDIIYITDMSDTNWWKGTSKGRTGL------IPSNYVAEQAESIDNPLHEAAKRG 84

Query: 185 NMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           N+    + L    N   V      G T L+ AC   H +IVE+L  +  + +N  +    
Sbjct: 85  NLSWLRECLD---NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD 141

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           T L AA  +G   ++  L+ +    D+++I+       
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  108 bits (271), Expect = 6e-27
 Identities = 33/284 (11%), Positives = 66/284 (23%), Gaps = 97/284 (34%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           +  +    Y       + L      + Y  D  DT         +         +     
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG------LIPSNYV 66

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------SA 112
           + +                                            D P        + 
Sbjct: 67  AEQAESI----------------------------------------DNPLHEAAKRGNL 86

Query: 113 ECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSK 172
                 +            VN  D    T ++ A   G ++I  +L + P + L      
Sbjct: 87  SWLRECLDN-------RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL------ 133

Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
             N                            +   G T LH A +  + +IV+LL+ K  
Sbjct: 134 --NQ---------------------------QNKLGDTALHAAAWKGYADIVQLLLAK-G 163

Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
              +  +++K+     A      S++      D    + + +  
Sbjct: 164 ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 91.9 bits (229), Expect = 3e-21
 Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 10/150 (6%)

Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKI 192
                     +  A+          L    E ++                +G   +    
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQ 252
               +             PLH A    ++  +   ++  +V +N LD    T L  A   
Sbjct: 65  YVAEQA-------ESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHG 116

Query: 253 GQTSVINYLMLRDVA-LDIQDIDGNGLLHF 281
           G   ++  L  +    L+ Q+  G+  LH 
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHA 146

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
             +    +N Q+   DT +H A  KG+ +I  LLL+     +L   N +     + A   
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL--RNIEKKLAFDMATNA 183

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH 220
               + +K    +         ++ +     +    H
Sbjct: 184 ACASLLKKKQGTDAVRTL--SNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 43/152 (28%)

Query: 1   KTLLHILAYQGCVEELNILLA-RGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
            T L+   + G  + + +L       +   +  GDTALH AA+    D +Q+  +   GA
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK--GA 164

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
               ++I K                      +                 D  +      L
Sbjct: 165 RTDLRNIEK----------------------KLA--------------FDMATNAACASL 188

Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKG 150
           +K             + +        D+  + 
Sbjct: 189 LK---KKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  111 bits (281), Expect = 6e-27
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEV--NLYLENSKGFNILNYAVL 182
           L++ G +  I + ++ + +H A A     + + +L+  ++  ++   +  G   L     
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244

Query: 183 RGNMKVTEKILAL-----NRNLATVP----KTSDGFTPLHVACFNDHIEIVELLVEKYKV 233
                       L       +         +   G T LH A    ++ IV+ LV +   
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304

Query: 234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           N +  D   +TP+M A  +G+  V+ YL+ +  +++  D   +     
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  102 bits (256), Expect = 1e-23
 Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 15/168 (8%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
               N       +      +H   A G   I   +      +    +      +L++   
Sbjct: 79  FNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNII---DPRHNRTVLHWIAS 134

Query: 183 RGNMKVTEKILALNRNLATVP------KTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
             + + +E ++                   D  TPL +A       +V  L++    +  
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPT 193

Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVA---LDIQDIDGNGLLHF 281
             +  +R+ L  A       ++ Y++        ++  D +G   L  
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 98.5 bits (246), Expect = 2e-22
 Identities = 41/299 (13%), Positives = 69/299 (23%), Gaps = 93/299 (31%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
                     G     +           P+      LH  A G+      I       N 
Sbjct: 62  LYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRE--SVN- 118

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETP-----MLNMKFIPRMNEDMLDTPSAECS 115
               I   RH                    T        +       + +  +      +
Sbjct: 119 ----IIDPRHN------------------RTVLHWIASNS-------SAEKSEDLIVHEA 149

Query: 116 GILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFN 175
              I         G +VN  D +++TP+  AV      +   L+             G +
Sbjct: 150 KECIAA-------GADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-----------GAD 191

Query: 176 ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKV-- 233
                                             + LH A  N    ++  ++   K+  
Sbjct: 192 P-------------------TI------YNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 234 NINALDLKKRTPLMAAV---GQGQTSVINYLM--------LRDVALDIQDIDGNGLLHF 281
           +I  LD    T LM      G+ Q +    L+              D +   G   LH+
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 93.9 bits (234), Expect = 7e-21
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 12/160 (7%)

Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV 188
               N   +    P       G + +     ++          +    L+     G+  +
Sbjct: 51  KRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTN-LQIPTEPEPESPIKLHTEA-AGSYAI 108

Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE---KYKV----NINALDLK 241
           TE I    R    +       T LH    N   E  E L+    K  +    ++NA+D  
Sbjct: 109 TEPIT---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           + TPLM AV   +  ++ YLM       I +      LH 
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 205

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 90.8 bits (226), Expect = 7e-20
 Identities = 40/272 (14%), Positives = 76/272 (27%), Gaps = 82/272 (30%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
            T L +         +  L+  GA     + +  +ALH AA       +   +NS     
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
           +                               T +  M        D + +  A+   +L
Sbjct: 227 DIEELDRNG----------------------MTAL--MIVAHNEGRDQVAS--AK---LL 257

Query: 119 IKQDFVLLRNGCNVNI--------QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN 170
           +++       G  V+         +     T +H A       I   L+           
Sbjct: 258 VEK-------GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE--------- 301

Query: 171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
            KG N         +                  +  DG TP+ +A     IE+V  L+++
Sbjct: 302 -KGSNK--------DK-----------------QDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

Query: 231 YKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
              ++ A+D    T    A      ++++   
Sbjct: 336 -GASVEAVDATDHTARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.5 bits (189), Expect = 4e-15
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 14/116 (12%)

Query: 125 LLRNGCNVNI--------QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI 176
           L+  G  V+         +     T +H A       I   L+     N   ++  G   
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 316

Query: 177 LNYAVLRGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
           +  A   G ++V   ++    +         +   T   +A  N+H  IV++    
Sbjct: 317 IMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 16/115 (13%)

Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
              +   + L  A   G +K         RN            P      N +  + +  
Sbjct: 32  QSITSSQHSLLEASYDGYIKR-------QRNE----LQHYSLYPNPQGYGNGNDFLGDFN 80

Query: 228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI-QDIDGNGLLHF 281
                      + +    L      G  ++   +    V  +I        +LH+
Sbjct: 81  HTN-LQIPTEPEPESPIKLHTEA-AGSYAITEPITRESV--NIIDPRHNRTVLHW 131

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 34/181 (18%), Positives = 51/181 (28%), Gaps = 68/181 (37%)

Query: 1   KTLLHILAYQGCVEELNI---LLARGACVYYP--------DDAGDTALHYAAFGNKPDAI 49
            T L I+A+    +++     L+ +GA V Y            G TALHYAA  +    +
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 50  QI-NSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLD 108
           +       G+N                                   + +     +ED   
Sbjct: 296 KYLVGEK-GSN----------------------------------KDKQ-----DEDG-K 314

Query: 109 TP--------SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS 160
           TP          E    LI+Q       G +V   D    T    A A     I  +   
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQ-------GASVEAVDATDHTARQLAQANNHHNIVDIFDR 367

Query: 161 H 161
            
Sbjct: 368 C 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           KT + + A +G +E +  L+ +GA V   D    TA   A   N  + + I +       
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC--RPE 371

Query: 60  R 60
           R
Sbjct: 372 R 372

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  111 bits (280), Expect = 7e-27
 Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 39/250 (15%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           L        +    +   + +A   G  E++  LL     VN +  + +    L+ A   
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGY 68

Query: 184 GNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
             +++ + +L    + A V  K   G  PLH AC   H E+ ELL++     +NA+DL +
Sbjct: 69  NRVRIVQLLLQ---HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQ 124

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF-----------LFIKKNFYKT 291
            TPL  A  + +  V + L+       + +  G   +                K +   +
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH---S 181

Query: 292 PI--TREKSVPIYEEYLSVGGP----------------SNEHGILLAVFLFLVKHGAPLS 333
            +   RE  +   ++ L++                   ++ H     V   L++ GA ++
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 334 LENNNRQKPL 343
            +N +   PL
Sbjct: 242 EKNKDFMTPL 251

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  104 bits (262), Expect = 2e-24
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 30/182 (16%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKG----------------------FEEIQLLLLSHP 162
           LL +G +  + + +  + +  A                            +++  L    
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202

Query: 163 EVNLYLENSKGFNILNYAVLRGNMKVTE--KILALNRNLATV-PKTSDGFTPLHVACFND 219
                 +       L+ AV   + K  +  ++L L +  A V  K  D  TPLHVA    
Sbjct: 203 INFK--QPQSHETALHCAVASLHPKRKQVAELL-LRKG-ANVNEKNKDFMTPLHVAAERA 258

Query: 220 HIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
           H +++E+L +     +NALD   +T L  A   G       L+       I  + G    
Sbjct: 259 HNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA 317

Query: 280 HF 281
             
Sbjct: 318 QM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  103 bits (260), Expect = 2e-24
 Identities = 48/280 (17%), Positives = 86/280 (30%), Gaps = 68/280 (24%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
            T LH  A +  VE  ++LL+ GA     +  G +A+  A      + +           
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK----GH 180

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--SAECSGIL 118
           S     +E       +                 L ++ I        +T    A  S   
Sbjct: 181 SLLQAAREADLAKVKK----------------TLALEIINFKQPQSHETALHCAVASLHP 224

Query: 119 IKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFN 175
            ++     LLR G NVN ++ +  TP+H A  +   ++  +L  H  ++N          
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA--------- 275

Query: 176 ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
                                         S G T LH A    H++   LL+  Y  + 
Sbjct: 276 ----------------------------LDSLGQTALHRAALAGHLQTCRLLLS-YGSDP 306

Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
           + + L+  T             +  ++     +   D+D 
Sbjct: 307 SIISLQGFTAAQMG-----NEAVQQILSESTPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.5 bits (249), Expect = 7e-23
 Identities = 58/294 (19%), Positives = 94/294 (31%), Gaps = 78/294 (26%)

Query: 1   KTLLHILAYQGCVEEL-NILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
           K  L   A  G  E+L  +L       +  D    T LH AA  N+   +Q+   H  GA
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GA 82

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-------- 110
           +                                  ++ K     ++  L  P        
Sbjct: 83  D----------------------------------VHAK-----DKGGL-VPLHNACSYG 102

Query: 111 SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN 170
             E + +L+K        G  VN  D  Q TP+H+A +K   E+  LLLSH   +  L N
Sbjct: 103 HYEVTELLLKH-------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVN 154

Query: 171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
             G + ++ A      +                    G + L  A   D  ++ + L   
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEF-------------KGHSLLQAAREADLAKVKKTLAL- 200

Query: 231 YKVNINALDLKKRTPLMAAVGQG---QTSVINYLMLRDVALDIQDIDGNGLLHF 281
            ++          T L  AV      +  V   L+ +   ++ ++ D    LH 
Sbjct: 201 -EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV 253

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  108 bits (272), Expect = 2e-26
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 20/166 (12%)

Query: 124 VLLRNGCNVNIQDNNQD----------TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKG 173
            L + G NVN++   ++          T + DA  KG  E+  +LL     ++   ++ G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 174 FNILNYAVLRGNMKVTEKILAL------NRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
            N L +A+L  +    E I  L      + N+    +   G TPL +A    H+ +V+ L
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNV----RGERGKTPLILAVEKKHLGLVQRL 238

Query: 228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDI 273
           +E+  + IN  D   +T L+ AV      +   L  R  + D  D+
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 90.6 bits (226), Expect = 3e-20
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 38/153 (24%)

Query: 125 LLRNGCNVNIQDNN-QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           LL  G NVN Q+     TP+H+AV    E+I  LLL H           G +        
Sbjct: 24  LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-----------GADP------- 65

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
             +                 +  +G TP  +A     +++++L + K   ++N  D    
Sbjct: 66  -VL-----------------RKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGF 106

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
           T  M A   G+   + +L  R   ++++     
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.9 bits (219), Expect = 2e-19
 Identities = 33/168 (19%), Positives = 53/168 (31%), Gaps = 46/168 (27%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +LLR+G +  ++  N  TP   A   G  ++  L LS            G ++       
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-----------GADV------- 98

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE---------KYKVN 234
                       N           GFT    A     ++ ++ L +         K K +
Sbjct: 99  ------------NE------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140

Query: 235 INALDLKKRTPLMAAVGQGQTSVINYLMLRDVA-LDIQDIDGNGLLHF 281
              L     T LM A  +G   V+  L+    A ++  D  G   L  
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.5 bits (205), Expect = 2e-17
 Identities = 45/257 (17%), Positives = 69/257 (26%), Gaps = 95/257 (36%)

Query: 1   KTLLHILAYQGCVEELNILLARGA----------CVYYPDDAGDTALHYAAFGNKPDAIQ 50
            T     A  G V+ L  L  RGA                  G TAL  AA     + ++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 51  --INSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLD 108
             +   + GA+                                  +N       +     
Sbjct: 166 ILL-DEM-GAD----------------------------------VNAC-----DNMG-R 183

Query: 109 TP---SAECSGILIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE 163
                +   S     +     LL +G +VN++     TP+  AV K    +   LL    
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-- 241

Query: 164 VNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEI 223
                   +   I        N                    SDG T L +A      +I
Sbjct: 242 --------EHIEI--------ND-----------------TDSDGKTALLLAVELKLKKI 268

Query: 224 VELLVEKYKVNINALDL 240
            ELL ++   + +  DL
Sbjct: 269 AELLCKR-GASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           T LH        + + +LL  GA        G T    AA       +++  S   GA+
Sbjct: 40 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GAD 97

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  106 bits (268), Expect = 3e-26
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 11/165 (6%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-----PEVNLYLENSKGFNILN 178
            LL  GC+  ++D   +TP+H A  +G      +L            L   N  G   L+
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 179 YAVLRGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
            A + G + + E +++L  + N        +G T LH+A    + ++V LL++    ++N
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQE---PCNGRTALHLAVDLQNPDLVSLLLKC-GADVN 178

Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            +  +  +P     G+  T +   L    +       +      +
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 92.2 bits (230), Expect = 3e-21
 Identities = 44/266 (16%), Positives = 76/266 (28%), Gaps = 94/266 (35%)

Query: 30  DDAGDTALHYAAF-GNKPDAIQIN----SHVSGANRSRKHIYKERHRTVTTEKVQRPSNL 84
            + GD+ LH A     K   +++          A                          
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAF------------------------- 37

Query: 85  PKVEPETPMLNMKFIPRMNEDMLDTP--------SAECSGILIKQDFVLLRNGCNVNIQD 136
                    LN +     N     TP          E +  L+         GC+  ++D
Sbjct: 38  ---------LNFQ-----NNLQQ-TPLHLAVITNQPEIAEALLG-------AGCDPELRD 75

Query: 137 NNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN 196
              +TP+H A  +G      +L                    +++L              
Sbjct: 76  FRGNTPLHLACEQGCLASVGVLTQS-----------CTTPHLHSIL--KA---------- 112

Query: 197 RNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK-RTPLMAAVGQGQT 255
                     +G T LH+A  + ++ IVELLV     ++NA +    RT L  AV     
Sbjct: 113 -------TNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNP 164

Query: 256 SVINYLMLRDVALDIQDIDGNGLLHF 281
            +++ L+     ++     G      
Sbjct: 165 DLVSLLLKCGADVNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 37/260 (14%), Positives = 62/260 (23%), Gaps = 90/260 (34%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +T LH+       E    LL  G      D  G+T LH A       ++ +         
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS--CTT 103

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
                                            +L        N +   T          
Sbjct: 104 PHLH----------------------------SILKAT-----NYNGH-TCLHLASIHGY 129

Query: 112 AECSGILIKQDFVLLRNGCNVNIQDN-NQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN 170
                +L+         G +VN Q+  N  T +H AV     ++  LLL           
Sbjct: 130 LGIVELLVS-------LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--------- 173

Query: 171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
             G ++                   NR       T  G++P  +        I + L + 
Sbjct: 174 --GADV-------------------NR------VTYQGYSPYQLTWGRPSTRIQQQLGQ- 205

Query: 231 YKVNINALDLKKRTPLMAAV 250
             +    +  +         
Sbjct: 206 LTLENLQMLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 70.7 bits (174), Expect = 7e-14
 Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 47/157 (29%)

Query: 135 QDNNQDTPMHDAVAKGFEEIQL----LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE 190
              + D+ +H A+    + + +     +                 +        N     
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-----------LAFL--------NF---- 40

Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV 250
                        + +   TPLH+A   +  EI E L+     +    D +  TPL  A 
Sbjct: 41  -------------QNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLAC 86

Query: 251 GQGQTSVINYL------MLRDVALDIQDIDGNGLLHF 281
            QG  + +  L            L   + +G+  LH 
Sbjct: 87  EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 124 VLLRNGCNVNIQDN-NQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAV 181
           +L+  G +VN Q+  N  T +H AV     ++  LLL    +VN      +G++      
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR--VTYQGYSPYQLTW 192

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
            R + ++ +++  L      +    +          ++  E  E
Sbjct: 193 GRPSTRIQQQLGQLTLE--NLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP-EVNLYLENSKGFNILNYAVLR 183
           LL+ G +VN       +P      +    IQ  L     E    L  S+  +  +Y    
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE--DEESYDTES 227

Query: 184 GNMKVTEK 191
              + TE 
Sbjct: 228 EFTEFTED 235

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  107 bits (271), Expect = 3e-26
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +LL++G  VN    +  TP+ +A   G  +   LLL H   V      S   + ++ A  
Sbjct: 110 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAAR 166

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
           RG+++    ++A   N+    K S   TPL++AC N     V+ L+E    ++N     +
Sbjct: 167 RGHVECVNSLIAYGGNIDH--KISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQ 222

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            +PL A V      +   LM        ++ +G   +  
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  107 bits (269), Expect = 6e-26
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            L+  G  VNI   +  +P+H+A   G      +LL H  +VN     +     L  A +
Sbjct: 77  NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG--VTADWHTPLFNACV 134

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
            G+      +L    + A+V   SD  +P+H A    H+E V  L+     NI+      
Sbjct: 135 SGSWDCVNLLLQ---HGASVQPESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHL 190

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            TPL  A    Q + +  L+     ++ Q    +  LH 
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.8 bits (242), Expect = 2e-22
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +LL++G +V   +++  +P+H+A  +G  E    L+++   N+  + S     L  A   
Sbjct: 143 LLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACEN 200

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
                 +K+L      A V +     +PLH        E+  LL++    +  A + + +
Sbjct: 201 QQRACVKKLLESG---ADVNQGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGK 256

Query: 244 TPLMAAVGQGQTSVI 258
            P+     +   + +
Sbjct: 257 RPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.2 bits (204), Expect = 2e-17
 Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 41/159 (25%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQ-LLLLSHPEVNLYLENSKGFNILNYAVL 182
            L+  G ++   D  Q   M  +   G  +   + LLS+P +                  
Sbjct: 13  GLVPRGSHMASMDGKQ-GGMDGSKPAGPRDFPGIRLLSNPLMG----------------- 54

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
                                     ++P+H A  + H   +  L+ +    +N +    
Sbjct: 55  ---------------------DAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADH 92

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            +PL  A   G  S +  L+     ++    D +  L  
Sbjct: 93  VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.2 bits (173), Expect = 2e-13
 Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            L+  G N++ + ++  TP++ A           LL    +VN   +     + L+  V 
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLHAVVR 231

Query: 183 RGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
             + ++   ++              K ++G  P+ +      +  +  L  +   ++  
Sbjct: 232 TASEELACLLMDFGADTQA------KNAEGKRPVELVPPESPLAQL-FLERE-GASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 26/171 (15%), Positives = 49/171 (28%), Gaps = 62/171 (36%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
            + +H  A +G VE +N L+A G  + +      T L+ A    +   ++  +    SGA
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE---SGA 214

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-------- 110
           +                                  +N            D+P        
Sbjct: 215 D----------------------------------VNQG-------KGQDSPLHAVVRTA 233

Query: 111 SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
           S E + +L+         G +   ++     P+     +     QL L   
Sbjct: 234 SEELACLLMDF-------GADTQAKNAEGKRPVELVPPES-PLAQLFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGAN 59
            + LH +      E   +L+  GA     +  G   +      +    + +     GA+
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLERE--GAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 32/99 (32%)

Query: 214 VACFNDHIEIVELLVEKYKVNINALDLKK------------------------------- 242
           +   + H      LV +   ++ ++D K+                               
Sbjct: 1   MGSSHHHHHHSSGLVPR-GSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD 59

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            +P+  A   G    +  L+ +  A++I   D    LH 
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHE 98

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  102 bits (258), Expect = 1e-25
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 14/143 (9%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
             +     +N  D    TP+  A A G   +   LL +  +  L        + L+ A  
Sbjct: 21  TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRESALSLACS 78

Query: 183 RGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
           +G   + + +L     +N          +G TPL  A   +H++ V++L+E    +    
Sbjct: 79  KGYTDIVKMLLDCGVDVNE------YDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIE 131

Query: 239 DLKKRTPLMAAVGQGQTSVINYL 261
                  +  AV  G  SV   +
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.7 bits (216), Expect = 4e-20
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 10/119 (8%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            LL+NG +  +    +++ +  A +KG+ +I  +LL    +VN Y  +  G   L YAV 
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY--DWNGGTPLLYAVH 111

Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
             ++K  + +L    +  +    +T  G+  + +A    +  + +++     + +    
Sbjct: 112 GNHVKCVKMLLESGADPTI----ETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           ++    +G M      +     +       +GFTPL  A  +  I +VE L++    +  
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQ 63

Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            L   + + L  A  +G T ++  L+   V ++  D +G   L +
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.0 bits (170), Expect = 7e-14
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
                +H       +  +   +E+ +  IN  D +  TPLM A   GQ +V+ +L+    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 267 ALDIQDIDGNGLLHF 281
              +        L  
Sbjct: 61  DPQLLGKGRESALSL 75

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.5 bits (109), Expect = 8e-06
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
             +H LA QG +  L   + +   + + D+ G T L +AA   +   ++ 
Sbjct: 4  SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           T L   A  G +  +  LL  GA         ++AL  A      D +++
Sbjct: 37 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.4 bits (96), Expect = 4e-04
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           ++ L +   +G  + + +LL  G  V   D  G T L YA  GN    +++
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 9e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T L    +   V+ + +LL  GA      D+G  ++  A         Q+
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  104 bits (263), Expect = 1e-25
 Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE 190
           N  ++  N+ +P+H A   G  +I  +L+     N+   +      L  A    +++  +
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV 250
            ++     +    K ++G T LH+A    H E+V+ L+   ++++N  D    TP++ A 
Sbjct: 62  YLIKAGALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 251 GQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
                 ++  L+ +   ++I+D + N  LH+
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHW 150

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 96.7 bits (242), Expect = 8e-23
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 124 VLLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAV 181
            LL NG  +VN QD+   TPM  A      ++  LLLS   ++N+   +++    L++A 
Sbjct: 95  YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI--RDNEENICLHWAA 152

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
             G + + E +LA   +L        G +PLH+A   +  + V L + +   ++   + +
Sbjct: 153 FSGCVDIAEILLAAKCDLHA--VNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKE 209

Query: 242 KRTPLMAAVGQGQTSVINYL 261
             TPL  A    Q      +
Sbjct: 210 GETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 95.6 bits (239), Expect = 2e-22
 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 36/158 (22%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            L++ G  V+ +D    T +H A  KG  E+   LLS+                      
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN---------------------- 99

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           G M V               +   G+TP+  A    H+++V+LL+ K   +IN  D ++ 
Sbjct: 100 GQMDVNC-------------QDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEEN 145

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
             L  A   G   +   L+     L   +I G+  LH 
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 81.7 bits (203), Expect = 1e-17
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL  G ++NI+DN ++  +H A   G  +I  +LL+  + +L+  N  G + L+ A    
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAAREN 188

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
                   L+ + ++    K  +G TPL  A  N  +     + + 
Sbjct: 189 RYDCVVLFLSRDSDVTL--KNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 5e-05
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
          ++ LH  A  G V+  ++L+  GA +    +   T L  AA  N  +A++       GA 
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GAL 69

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 6e-05
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
          +T L   A    +E +  L+  GA V   D  G T LH AA     + +Q 
Sbjct: 45 RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 6e-05
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
              LH  A+ GCV+   ILLA    ++  +  GD+ LH AA  N+ D + +  S    ++
Sbjct: 145 NICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSD 202

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            + LHI A +   + + + L+R + V   +  G+T L  A+  ++  +   
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.6 bits (99), Expect = 4e-04
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T +        V+ + +LL++G+ +   D+  +  LH+AAF    D  +I
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  101 bits (255), Expect = 3e-25
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 9/155 (5%)

Query: 125 LLRNGCN-VNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            LR G N VN  D    TP+  A A G  E    LL    + ++     +  + L+ A  
Sbjct: 21  HLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLAST 78

Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            G   +   +L L R+   +     +G TPL  A   +H++ VE L+ +   ++      
Sbjct: 79  GGYTDIV-GLL-LERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADS 134

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
             TP+  AV  G   V   +    + L   ++   
Sbjct: 135 GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPA 169

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 8e-22
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            LL  G + +I    +++ +  A   G+ +I  LLL    ++N+Y  +  G   L YAV 
Sbjct: 54  FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY--DWNGGTPLLYAVR 111

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
             ++K  E +LA   +L T  +   G+TP+ +A    + ++ +++     + +   +L  
Sbjct: 112 GNHVKCVEALLARGADLTT--EADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVP 168

Query: 243 RTP 245
             P
Sbjct: 169 ADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           ++    +G +   ++ L    NL        GFTPL  A     IE V  L+E    + +
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEW-GADPH 63

Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            L  ++ + L  A   G T ++  L+ RDV ++I D +G   L +
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY 108

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 66.7 bits (164), Expect = 4e-13
 Identities = 12/74 (16%), Positives = 26/74 (35%)

Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
               +H       ++ ++  + K    +N  D +  TPL+ A   G+   + +L+     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 268 LDIQDIDGNGLLHF 281
             I   +    L  
Sbjct: 62  PHILAKERESALSL 75

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 1  KTLLHILAYQGCVEELNILLARGA-CVYYPDDAGDTALHYAAFGN 44
             +H LA QG +++L   L +G   V  PD+ G T L +A+   
Sbjct: 3  SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG 47

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
          T L   +  G +E +  LL  GA  +      ++AL  A+ G   D + +
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           ++ L + +  G  + + +LL R   +   D  G T L YA  GN    ++ 
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  103 bits (260), Expect = 4e-25
 Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 7/160 (4%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           L+  G +V   D    T +H A      ++    +S    V+  L        L++A  +
Sbjct: 28  LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQ 86

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           G++ +  +++    + +      +G + +H+A    H  IV  L+ K   +++ +D    
Sbjct: 87  GHLSMVVQLMKYGADPSL--IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGM 143

Query: 244 TPLMAAVGQG-QTSVINYLMLRDVALDIQD-IDGNGLLHF 281
           TPLM A  +         L+  +V++++ D    N  LH+
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  102 bits (256), Expect = 1e-24
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           L++ G + ++ D    + +H A   G   I   L++   +V++   +  G   L +A  R
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYR 152

Query: 184 GNMKVTEKILALNRNLATVPKT--SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            +     ++L L  N  +V         T LH A    +  ++ LL+E    N++A ++K
Sbjct: 153 THSVDPTRLL-LTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIK 209

Query: 242 KRTPLMAAVGQGQTSVINYL 261
             + L  A  +    +IN+L
Sbjct: 210 GESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  101 bits (254), Expect = 2e-24
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 7/160 (4%)

Query: 125 LLRNGCNVNIQDNNQD-TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            +  G  V+    + + TP+H A  +G   + + L+ +   +  L + +G + ++ A   
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQF 119

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH-IEIVELLVEKYKVNINALD-LK 241
           G+  +   ++A  +++       +G TPL  A +  H ++   LL+    V++N  D   
Sbjct: 120 GHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYH 176

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           K T L  AV  G T+VI+ L+     +D Q+I G   L  
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 88.3 bits (220), Expect = 8e-20
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 38/152 (25%)

Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE 190
           ++   D+     +  A   G  E    L+             G+++              
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEA-----------GYDV-------------- 35

Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK-RTPLMAA 249
                 +         +  T LH A  N+ I++V+  + K    ++ L      TPL  A
Sbjct: 36  -----RQ------PDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWA 83

Query: 250 VGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
             QG  S++  LM       + D +G   +H 
Sbjct: 84  TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 77.9 bits (193), Expect = 3e-16
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFE-EIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           L+  G +V++ D N  TP+  A  +    +   LLL+    VNL  +       L++AVL
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKNTALHWAVL 186

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
            GN  V   +L    N+    +   G + L +A    ++ ++  L E  +     
Sbjct: 187 AGNTTVISLLLEAGANVDA--QNIKGESALDLAKQRKNVWMINHLQEA-RQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.8 bits (128), Expect = 6e-08
 Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 58/171 (33%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAF-GNKPDAIQI-NSHVSGA 58
            + +H+ A  G    +  L+A+G  V   D  G T L +AA+  +  D  ++  +     
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF--NV 167

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-------- 110
           +                                  +N+      ++   +T         
Sbjct: 168 S----------------------------------VNLG-----DKYHKNTALHWAVLAG 188

Query: 111 SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
           +     +L++        G NV+ Q+   ++ +  A  +    +   L   
Sbjct: 189 NTTVISLLLEA-------GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T LH     G    +++LL  GA V   +  G++AL  A        I           
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA--RQA 235

Query: 60  RSRK 63
           +   
Sbjct: 236 KGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LH    QG +  +  L+  GA     D  G + +H AA       +  
Sbjct: 77  STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAY 127

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (256), Expect = 1e-24
 Identities = 46/294 (15%), Positives = 88/294 (29%), Gaps = 94/294 (31%)

Query: 1   KTLLHILAYQGCVEE----LNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHV 55
            T LHI   QG +      +N+    G  +   ++   T LH A     P  +++  +  
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA- 68

Query: 56  SGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP----- 110
            GA+      + +                                        T      
Sbjct: 69  -GASPMALDRHGQ----------------------------------------TAAHLAC 87

Query: 111 ---SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLY 167
              S  C   L+           ++  ++ +  T +H AV    +E   LLL        
Sbjct: 88  EHRSPTCLRALLDSA---APGTLDLEARNYDGLTALHVAVNTECQETVQLLLER------ 138

Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
                G +I        +    +                 G +PL  A  N+ + +V+LL
Sbjct: 139 -----GADI--------DAVDIK----------------SGRSPLIHAVENNSLSMVQLL 169

Query: 228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           ++    N+NA      + L +A G+G   ++  L+       +++   +  L  
Sbjct: 170 LQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 97.5 bits (244), Expect = 4e-23
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 124 VLLRNG----CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILN 178
            LL +      ++  ++ +  T +H AV    +E   LLL    +++     S G + L 
Sbjct: 97  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS-GRSPLI 155

Query: 179 YAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
           +AV   ++ + + +L  +   A V  +   G + LH A     + +V  LV     + + 
Sbjct: 156 HAVENNSLSMVQ-LLLQHG--ANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSL 211

Query: 238 LDLKKRTPLMAAVGQGQTSVINYL 261
            +    TPLM A  +    ++   
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.3 bits (202), Expect = 2e-17
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 37/154 (24%)

Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEK 191
               D + DTP+H AV +G       L++       L    G  +        ++     
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVN-------LFQQGGREL--------DI----- 41

Query: 192 ILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG 251
                         +   TPLH+A       +V LLV     +  ALD   +T    A  
Sbjct: 42  ------------YNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTAAHLACE 88

Query: 252 QGQTSVINYLMLR--DVALDIQDIDGNGL--LHF 281
               + +  L+       LD++  + +GL  LH 
Sbjct: 89  HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 78.3 bits (194), Expect = 2e-16
 Identities = 36/243 (14%), Positives = 63/243 (25%), Gaps = 97/243 (39%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYY----PDDAGDTALHYAAFGNKPDAIQI-NSHV 55
           +T  H+         L  LL   A         +  G TALH A      + +Q+     
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER- 138

Query: 56  SGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP----- 110
            GA+                                  ++       +     +P     
Sbjct: 139 -GAD----------------------------------IDAV-----DIKSGRSPLIHAV 158

Query: 111 ---SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLY 167
              S     +L++       +G NVN Q  +  + +H A  +G   +   L+        
Sbjct: 159 ENNSLSMVQLLLQ-------HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS------ 205

Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
                G +         ++                 K     TPL VA     I+I+   
Sbjct: 206 -----GADS--------SL-----------------KNCHNDTPLMVARSRRVIDILRGK 235

Query: 228 VEK 230
             +
Sbjct: 236 ATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
            + LH  + +G +  +  L+  GA     +   DT L  A      D ++   +    A+
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR--PAS 241

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  102 bits (257), Expect = 2e-24
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            L+  G +V   ++  DTP+  A  +  EE+    ++   V++                R
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI--------EAARKEEER 175

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
             ++   + L  + ++  V     G T LHVA    + E+++LL++  + ++N  D    
Sbjct: 176 IMLRDARQWL-NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGW 233

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           TPL AA   G+      L+     ++  +  G      
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.7 bits (247), Expect = 6e-23
 Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 25/220 (11%)

Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP-EVNLYLENSKGFNILNYAVLRGNMKVTE 190
           + + D  Q          G E      +    +            +   A   G+ +   
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTK---VKFDDGAVFLAACSSGDTEEVL 57

Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV 250
           ++L    ++       DG T LH AC +D++++V+ LVE    NIN  D +   PL AA 
Sbjct: 58  RLLERGADINY--ANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA 114

Query: 251 GQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGG 310
             G   +  YL+ +   +   + +G+  L                E    + +  ++  G
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDI-----------AEEEAMEELLQNEVNRQG 163

Query: 311 P-------SNEHGILLAVFLFLVKHGAPLSLENNNRQKPL 343
                     E  +L     +L            +    L
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 95.6 bits (239), Expect = 7e-22
 Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 31/184 (16%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           LL  G ++N  + +  T +H A      ++   L+ +   +N    +++G+  L+ A   
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ--PDNEGWIPLHAAASC 116

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA------ 237
           G + + E +++   ++      S+G TPL +A      E+++  V +  V+I A      
Sbjct: 117 GYLDIAEYLISQGAHVGA--VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174

Query: 238 ----LDLKK----------------RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
                D ++                 T L  A  +G T V+  L+     ++I+D DG  
Sbjct: 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234

Query: 278 LLHF 281
            LH 
Sbjct: 235 PLHA 238

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.8 bits (229), Expect = 1e-20
 Identities = 48/276 (17%), Positives = 79/276 (28%), Gaps = 89/276 (32%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
              LH  A  G ++    L+++GA V   +  GDT L  A      + +Q  +N    G 
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ--GV 164

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
           +       +ER                                M  D       +     
Sbjct: 165 DIEAARKEEERI-------------------------------MLRDA-----RQ----- 183

Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
                 L     N      +  T +H A AKG+ E+  LL+              +++  
Sbjct: 184 -----WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-----------RYDV-- 225

Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
                            N       K  DG+TPLH A      E   +LVE    ++ A+
Sbjct: 226 -----------------NI------KDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAV 261

Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
           +   +T    A       +    + +   L   +  
Sbjct: 262 NKVGQTAFDVADEDILGYLEE--LQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +       G  EE+  LL RGA + Y +  G TALH A   +  D ++    +  GAN
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN--GAN 98

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 7/45 (15%), Positives = 14/45 (31%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK 45
          K    +  + G   +L   + +        D G   L   + G+ 
Sbjct: 9  KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDT 53

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 99.0 bits (248), Expect = 3e-24
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 14/144 (9%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           +L+ NG +VN +D +  TP+H A   G  EI  +LL +  +VN    +  G   L  A L
Sbjct: 32  ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--VDHAGMTPLRLAAL 89

Query: 183 RGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
            G++++ E +L     +N          +G TPLH+A    H+EIVE+L++    ++NA 
Sbjct: 90  FGHLEIVEVLLKNGADVNA------NDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQ 142

Query: 239 DLKKRTPLMAAVGQGQTSVINYLM 262
           D   +T    ++  G   +   L 
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 91.7 bits (229), Expect = 8e-22
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 129 GCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNM 186
           G + +    ++    + +A   G ++   +L+++  +VN   E++ G+  L+ A   G++
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHL 60

Query: 187 KVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
           ++ E +L    + N         G TPL +A    H+EIVE+L++    ++NA D++  T
Sbjct: 61  EIVEVLLKNGADVNA----VDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHT 115

Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           PL  A   G   ++  L+     ++ QD  G      
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 78.9 bits (196), Expect = 2e-17
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
           VLL+NG +VN  D+   TP+  A   G  EI  +LL +  +VN    + +G   L+ A +
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA--NDMEGHTPLHLAAM 122

Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
            G++++ E +L    + N     +   G T   ++  N + ++ E+L + 
Sbjct: 123 FGHLEIVEVLLKNGADVNA----QDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.5 bits (104), Expect = 4e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
            T LH+ A+ G +E + +LL  GA V   D AG T L  AA     + ++  +  +  GA
Sbjct: 48  WTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KN--GA 104

Query: 59  N 59
           +
Sbjct: 105 D 105

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGAN 59
            L   A  G  +E+ IL+A GA V   D +G T LH AAF    + ++  +  +  GA+
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KN--GAD 72

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.4 bits (96), Expect = 5e-04
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
            T L + A  G +E + +LL  GA V   D  G T LH AA     + ++  +  +  GA
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KN--GA 137

Query: 59  N 59
           +
Sbjct: 138 D 138

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.7 bits (94), Expect = 9e-04
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LH+ A  G +E + +LL  GA V   D  G TA   +      D  +I
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  100 bits (251), Expect = 1e-23
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 10/160 (6%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
               +  +    D +  +  + A+A     +   LL+     NL     +    L+ A  
Sbjct: 16  KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAAT 71

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK- 241
             + K+ + +L    + +       G T L+ A  + +++ V+L V+K    +       
Sbjct: 72  LEDTKIVKILLFSGLDDSQ--FDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTG 128

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            +T    AV     S+++Y  L ++            +H 
Sbjct: 129 WKTSFYHAVMLNDVSIVSYF-LSEIPSTFDLAILLSCIHI 167

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =   99 bits (250), Expect = 2e-23
 Identities = 23/155 (14%), Positives = 64/155 (41%), Gaps = 9/155 (5%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNI-LNYAV 181
           +LL +G + +  D+  +T ++ AV  G  +   L +     +        G+     +AV
Sbjct: 80  ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF--YGKTGWKTSFYHAV 137

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
           +  ++ +    L+    + +    +   + +H+   N H++++ LL++    + N  +  
Sbjct: 138 MLNDVSIVSYFLS---EIPSTFDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSL 193

Query: 242 KRTP-LMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
              P +  A+      ++  L   D+ +   +++ 
Sbjct: 194 LFIPDIKLAIDNKDIEMLQALFKYDINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 99.1 bits (248), Expect = 3e-23
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 9/160 (5%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            LL  G   N+ +N  + P+H A      +I  +LL    ++    + KG   L YAV  
Sbjct: 49  TLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDS 105

Query: 184 GNMKVTEKILALNRNLATVPKTSDGF-TPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
           GNM+  +  +  N  L        G+ T  + A   + + IV   + +  +         
Sbjct: 106 GNMQTVKLFVKKNWRLMF--YGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAIL 161

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN-GLLHF 281
            + +   +  G   ++  L+    + +  +       +  
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKL 201

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 92.6 bits (231), Expect = 6e-21
 Identities = 21/159 (13%), Positives = 52/159 (32%), Gaps = 14/159 (8%)

Query: 124 VLLRNGCNVNIQDNN-QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
           + ++    +         T  + AV      I    LS        + +   + ++  + 
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIK 170

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTP-LHVACFNDHIEIVELLVEKYKVNINALDLK 241
            G++ +   +L    +  T    S  F P + +A  N  IE+++ L +   +NI      
Sbjct: 171 NGHVDMMILLLDYMTSTNT--NNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIY----- 222

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
             +  +  V      +   ++ + V         +  + 
Sbjct: 223 --SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 92.2 bits (230), Expect = 7e-21
 Identities = 37/265 (13%), Positives = 74/265 (27%), Gaps = 62/265 (23%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +  LH  A     + + ILL  G      DD G+TAL+YA        +++         
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWR 120

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--SAECSGI 117
                                             L         +    T    A     
Sbjct: 121 ----------------------------------LMFY-----GKTGWKTSFYHAVMLN- 140

Query: 118 LIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGF- 174
                 V   L    +         + +H  +  G  ++ +LLL +   +    NS  F 
Sbjct: 141 --DVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFI 196

Query: 175 NILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN 234
             +  A+   ++++ + +              + ++        D  EI ++++EK  V 
Sbjct: 197 PDIKLAIDNKDIEMLQALFK---------YDINIYSANLENVLLDDAEIAKMIIEK-HVE 246

Query: 235 INALDLKKRTPLMAAVGQGQTSVIN 259
             +    K   ++      +    N
Sbjct: 247 YKSDSYTKDLDIVKNNKLDEIISKN 271

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 17/117 (14%)

Query: 124 VLLRNGCNVNIQDNNQDTP-MHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI---LNY 179
           +LL    + N  ++    P +  A+     E+   L  +             NI      
Sbjct: 179 LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-----------DINIYSANLE 227

Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
            VL  + ++ + I+  +    +   +      +      D I      +    VN  
Sbjct: 228 NVLLDDAEIAKMIIEKHVEYKS--DSYTKDLDIVKNNKLDEIISKNKELRLMYVNCV 282

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 98.3 bits (246), Expect = 2e-23
 Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 9/141 (6%)

Query: 124 VLLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+RN   +++ + ++  TP+  A     E +   L++    ++   +  G + L++A  
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAA 134

Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
             N+     +L    N+++    + +   TPL +A      E  ++L++    N +  D 
Sbjct: 135 VNNVDAAVVLLKNGANKDM----QNNREETPLFLAAREGSYETAKVLLDH-FANRDITDH 189

Query: 241 KKRTPLMAAVGQGQTSVINYL 261
             R P   A  +    ++  L
Sbjct: 190 MDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 92.9 bits (232), Expect = 1e-21
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 36/157 (22%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL    + NIQDN   TP+H AV+   + +  +L+ +          +  ++        
Sbjct: 44  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN----------RATDL-------- 85

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
                      +       +  DG TPL +A       ++E L+     ++NA+D   ++
Sbjct: 86  -----------DA------RMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKS 127

Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            L  A           L+      D+Q+      L  
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.9 bits (214), Expect = 3e-19
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 37/158 (23%)

Query: 125 LLRNGCNV-NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            +  G ++ N  D   +T +H A      +    LL               +        
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-----------SADA------- 51

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
            N+                 + + G TPLH A   D   + ++L+     +++A      
Sbjct: 52  -NI-----------------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 93

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           TPL+ A       ++  L+     ++  D  G   LH+
Sbjct: 94  TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 81.3 bits (202), Expect = 1e-17
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            L+ +  +VN  D+   + +H A A    +  ++LL +   N  ++N++    L  A   
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAARE 168

Query: 184 GNMKVTEKILAL---NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
           G+ +  + +L     NR++           P  +A    H +IV LL E 
Sbjct: 169 GSYETAK-VLLDHFANRDI----TDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           K+ LH  A    V+   +LL  GA     ++  +T L  AA     +  ++   H   AN
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH--FAN 183

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T L + A       L  L+   A V   DD G +ALH+AA  N  DA  +   +  GAN
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GAN 150

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 15/51 (29%), Positives = 20/51 (39%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
          +T LH+ A     +    LL   A     D+ G T LH A   +     QI
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 76

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +T L + A +G  E   +LL   A     D         A      D +++ + +     
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY--NLV 216

Query: 60  RS 61
           RS
Sbjct: 217 RS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 219 DHIEIVELLVEKYKVNI-NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
           D   ++   + +   ++ N  D    T L  A    ++     L+      +IQD  G  
Sbjct: 2   DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 278 LLHF 281
            LH 
Sbjct: 61  PLHA 64

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 97.1 bits (243), Expect = 2e-23
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 6/138 (4%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           L+ N   +  +D    T +  AV      I   LLS    N+  ++  G   L ++++ G
Sbjct: 54  LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFG 112

Query: 185 NMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
             +++   L  +   A V  +  +G TPL VA      EIV+ L+E    +I+A DL   
Sbjct: 113 YSEMSY-FLLEHG--ANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGL 168

Query: 244 TPLMAAVGQGQTSVINYL 261
           T   +A   G+  VI   
Sbjct: 169 TAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.4 bits (179), Expect = 7e-15
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            LL  G NVN +D +  TP+  ++  G+ E+   LL H   VN    N +G   L  A  
Sbjct: 86  KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND--RNLEGETPLIVASK 143

Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
            G  ++ +K+L L  + +     +   G T    A      E++++  E
Sbjct: 144 YGRSEIVKKLLELGADISA----RDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.3 bits (171), Expect = 9e-14
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
           + S   TPL VAC       ++ LVE     +   D++  T L+ AV   +  +   L+ 
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89

Query: 264 RDVALDIQDIDGNGLLHF 281
           +   ++ +D  G   L +
Sbjct: 90  KGSNVNTKDFSGKTPLMW 107

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
          +T L +    G    ++ L+     +   D  G TAL +A   N+    +   S   G+N
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSN 93

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.9 bits (105), Expect = 4e-05
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
            LL  G +++ +D    T    A   G +E+  +    
Sbjct: 152 KLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
            T L        +     LL++G+ V   D +G T L ++      +     +  H  GA
Sbjct: 69  STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-EH--GA 125

Query: 59  N 59
           N
Sbjct: 126 N 126

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           KT L      G  E    LL  GA V   +  G+T L  A+   + + ++       GA+
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--GAD 159

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 95.2 bits (238), Expect = 4e-23
 Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           L R   + +  +    T +      G   I L LL      N+  +++ G + ++ A   
Sbjct: 22  LHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNV--QDTSGTSPVHDAART 78

Query: 184 GNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
           G +   + ++     +N           G  P+H+A    H  +V  L    + +++  D
Sbjct: 79  GFLDTLKVLVEHGADVNV------PDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRD 130

Query: 240 LKKRTPLMAAVGQGQTSVINYL 261
            +  TPL  A+ +G   +++ L
Sbjct: 131 ARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.8 bits (198), Expect = 9e-18
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 12/110 (10%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            LL+ G + N+QD +  +P+HDA   GF +   +L+ H  +VN+   +  G   ++ AV 
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV--PDGTGALPIHLAVQ 110

Query: 183 RGNMKVTEKILA---LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
            G+  V   + A   L+R      + + G TPL +A      ++V++L  
Sbjct: 111 EGHTAVVSFLAAESDLHR------RDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEK 230
           +  + L+ A  RG+++   ++L  +R L         G T L V  F     I   L+++
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFG-STAIALELLKQ 57

Query: 231 YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
              + N  D    +P+  A   G    +  L+     +++ D  G   +H 
Sbjct: 58  -GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL 107

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGAN 59
            + +H  A  G ++ L +L+  GA V  PD  G   +H A        +      + ++
Sbjct: 69  TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF--LAAESD 125

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 2  TLLHILAYQGCVEELNILL-ARGACVYYPDDAGDTALHYAAFGNK 45
            L   A +G V+E+  LL          +  G TAL    FG+ 
Sbjct: 4  DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
            L    +++ +D    TP+  A+ +G +++  +L  H
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
          KT L ++ + G       LL +GA     D +G + +H AA     D +++   H  GA+
Sbjct: 37 KTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH--GAD 93

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 94.4 bits (236), Expect = 7e-23
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            LL+N  NVN Q+    T +      G  EI   LL      +L  ++  GF +++ A  
Sbjct: 23  SLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAAR 79

Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            G +   +  L   +  A V  + ++G  PLH+A    H+ +VE LV+    N+   + K
Sbjct: 80  AGFLDTLQ-TLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136

Query: 242 KRTPLMAAVGQGQTSVINYL 261
             T    A   G+  V++ +
Sbjct: 137 GDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 84.0 bits (209), Expect = 4e-19
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            LL  G N +++D      +HDA   GF +    LL    +VN+  E+++G   L+ A  
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI--EDNEGNLPLHLAAK 112

Query: 183 RGNMKVTEKIL---ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
            G+++V E ++   A N       +   G T   +A      E+V L+   
Sbjct: 113 EGHLRVVEFLVKHTASNVGH----RNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 38/146 (26%)

Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
                  +  A A+G  E    LL +             N+                   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQN-----------NVNV------------------- 31

Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
           N       +   G T L V     + EI   L+ +   N +  D      +  A   G  
Sbjct: 32  NA------QNGFGRTALQVMKLG-NPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL 83

Query: 256 SVINYLMLRDVALDIQDIDGNGLLHF 281
             +  L+     ++I+D +GN  LH 
Sbjct: 84  DTLQTLLEFQADVNIEDNEGNLPLHL 109

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK 45
             L   A +G +E+L  LL     V   +  G TAL     GN 
Sbjct: 6  GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 50

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
          +T L +    G  E    LL RGA     D  G   +H AA     D +Q  +      A
Sbjct: 39 RTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EF--QA 94

Query: 59 N 59
          +
Sbjct: 95 D 95

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
             ++H  A  G ++ L  LL   A V   D+ G+  LH AA       ++ 
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 96.1 bits (239), Expect = 1e-22
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 4/158 (2%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            LL+ G  VN +D+   +P+H A + G +EI   LL     ++   N  G   L+YA  +
Sbjct: 58  FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASK 116

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
              ++   +L    N     K     T +H A    ++++V +L+   K + N  D +  
Sbjct: 117 NRHEIAVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGN 173

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           TPL  A  + +     +L+ +  ++ I++ +    L  
Sbjct: 174 TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 95.7 bits (238), Expect = 1e-22
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 6/207 (2%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
           +L +       D +  T +H A + G  EI   LL     VN   ++  G++ L+ A   
Sbjct: 26  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASA 83

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
           G  ++ + +L    ++       +G TPLH A   +  EI  +L+E    N +A D    
Sbjct: 84  GXDEIVKALLVKGAHVNA--VNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDA 140

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYE 303
           T +  A  +G   +++ L+    + +IQD +GN  LH    ++   +      +   IY 
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200

Query: 304 EYLSVGGPSNEHGILLAVFLFLVKHGA 330
           E      P       L + L  +  G 
Sbjct: 201 ENKEEKTPLQVAKGGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 52/264 (19%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
             + ++       E    +LA  +     D    TALH+A      + ++       G  
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVP 65

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--SAECSGI 117
                                             +N K     ++    +P   A  +G 
Sbjct: 66  ----------------------------------VNDK-----DDAGW-SPLHIAASAGX 85

Query: 118 LIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNIL 177
                 +L   G +VN  + N  TP+H A +K   EI ++LL     N   ++      +
Sbjct: 86  DEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAM 143

Query: 178 NYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
           + A  +GN+K+   +L    +     + ++G TPLH+AC  + +E  + LV     +I  
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNI--QDTEGNTPLHLACDEERVEEAKFLVT-QGASIYI 200

Query: 238 LDLKKRTPLMAAVGQGQTSVINYL 261
            + +++TPL  A  +G   +I   
Sbjct: 201 ENKEEKTPLQVA--KGGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 85.3 bits (211), Expect = 6e-19
 Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 48/237 (20%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ-INSHVSGAN 59
           +T LH     G  E +  LL  G  V   DDAG + LH AA     + ++ +    +  N
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
              ++     H   +  + +                                        
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAV------------------------------------- 123

Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
               +LL  G N + +D+   T MH A AKG  ++  +LL + + +  +++++G   L+ 
Sbjct: 124 ----MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHL 178

Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           A     ++  + ++    ++    +  +  TPL VA     + ++   + +     +
Sbjct: 179 ACDEERVEEAKFLVTQGASIYI--ENKEEKTPLQVA--KGGLGLILKRLAE-GEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 9/209 (4%)

Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
              I N A      ++ E+ILA            D  T LH AC   H EIVE L++   
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATR--TDQDSRTALHWACSAGHTEIVEFLLQL-G 63

Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTP 292
           V +N  D    +PL  A   G   ++  L+++   ++  + +G   LH+   K       
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123

Query: 293 ITREKSVPIYEEYLSVGGP---SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED 349
           +  E       +          +   G  L +   L+ + A  ++++     PL L  ++
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKG-NLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

Query: 350 TSLLNEIMEHAREYVTDLTNENNKVVTAI 378
             +  E  +        +  EN +  T +
Sbjct: 183 ERV--EEAKFLVTQGASIYIENKEEKTPL 209

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 5/186 (2%)

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
                    ++A      E+ E ++   K      D   RT L  A   G T ++ +L+ 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61

Query: 264 RDVALDIQDIDGNGLLHF--LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV 321
             V ++ +D  G   LH           K  + +   V    +                +
Sbjct: 62  LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121

Query: 322 FLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQL 381
            + L++ GA    +++     +       +L  +++     Y      ++ +  T +   
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNL--KMVHILLFYKASTNIQDTEGNTPLHLA 179

Query: 382 ALDEKL 387
             +E++
Sbjct: 180 CDEERV 185

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 93.6 bits (234), Expect = 2e-22
 Identities = 44/154 (28%), Positives = 62/154 (40%), Gaps = 8/154 (5%)

Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV 188
           G   N   +  D  + +A   G  E    L +   VN      +    L++A     + V
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 189 TEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
            E  L  +   A V  K   G  PLH AC   H E+ ELLV K+   +N  DL K TPL 
Sbjct: 58  VE-YLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLH 113

Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            A  +G+  +   L+        ++ DGN  L  
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 79.4 bits (197), Expect = 2e-17
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 38/138 (27%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            LL++G +V+ +D     P+H+A + G  E+  LL+ H           G  +       
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----------GAVV------- 101

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
                       N            FTPLH A      EI +LL+ ++  +    +    
Sbjct: 102 ------------NV------ADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKKNRDGN 142

Query: 244 TPLMAAVGQGQTSVINYL 261
           TPL      G T + + L
Sbjct: 143 TPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.9 bits (144), Expect = 2e-10
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 37/107 (34%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +L+++G  VN+ D  + TP+H+A AKG  EI  LLL H           G +        
Sbjct: 93  LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-----------GADP------- 134

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
                        +      K  DG TPL +   +   +I +LL   
Sbjct: 135 ------------TK------KNRDGNTPLDLVK-DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 31/170 (18%), Positives = 49/170 (28%), Gaps = 59/170 (34%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T LH  A    V  +  LL  GA V+  D  G   LH A      +  ++   H  GA 
Sbjct: 43  STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAV 100

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
            +   ++K                                         TP         
Sbjct: 101 VNVADLWKF----------------------------------------TPLHEAAAKGK 120

Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
            E   +L++        G +   ++ + +TP+      G  +IQ LL   
Sbjct: 121 YEICKLLLQH-------GADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.8 bits (97), Expect = 3e-04
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 1  KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
             L   A  G VE +  L    +      +    T LH+AA  N+   ++    H  GA
Sbjct: 9  DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GA 66

Query: 59 N 59
          +
Sbjct: 67 D 67

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 96.4 bits (241), Expect = 2e-22
 Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 124 VLLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +L+RN   +++ + ++  TP+  A     E +   L++    ++   +  G + L++A  
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAA 166

Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
             N+     +L    N+++    + +   TPL +A      E  ++L++    N +  D 
Sbjct: 167 VNNVDAAVVLLKNGANKDM----QNNREETPLFLAAREGSYETAKVLLDH-FANRDITDH 221

Query: 241 KKRTPLMAAVGQGQTSVINYLML 263
             R P   A  +    ++  L L
Sbjct: 222 MDRLPRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 93.3 bits (233), Expect = 2e-21
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 36/157 (22%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL    + NIQDN   TP+H AV+   + +  +L+ +          +  ++        
Sbjct: 76  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN----------RATDL-------- 117

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
           +                  +  DG TPL +A       ++E L+     ++NA+D   ++
Sbjct: 118 DA-----------------RMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKS 159

Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            L  A           L+      D+Q+      L  
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 92.1 bits (230), Expect = 4e-21
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 25/169 (14%)

Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLS---HPEVNLYLENSKGFNILN--------- 178
           +VN++  +  TP+  A   G              P V       +G ++ N         
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQGASLHNQTDRTGETA 60

Query: 179 --YAVLRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
              A         +++L      N       + + G TPLH A   D   + ++L+    
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANI------QDNMGRTPLHAAVSADAQGVFQILIRNRA 114

Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            +++A      TPL+ A       ++  L+     ++  D  G   LH+
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.8 bits (211), Expect = 1e-18
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
            L+ +  +VN  D+   + +H A A    +  ++LL +    ++  +N++    L  A  
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAR 199

Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
            G+ +  + +L    NR++           P  +A    H +IV LL  +   + +
Sbjct: 200 EGSYETAKVLLDHFANRDI----TDHMDRLPRDIAQERMHHDIVRLLDLE-HHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.2 bits (142), Expect = 1e-09
 Identities = 37/175 (21%), Positives = 56/175 (32%), Gaps = 59/175 (33%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T L + A       L  L+   A V   DD G +ALH+AA  N  DA  +   +  GAN
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GAN 182

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
           +  ++  +E                                        TP        S
Sbjct: 183 KDMQNNREE----------------------------------------TPLFLAAREGS 202

Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVN 165
            E + +L+           N +I D+    P   A  +   +I +LL L H   +
Sbjct: 203 YETAKVLLDH-------FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 15/51 (29%), Positives = 20/51 (39%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           +T LH+ A     +    LL   A     D+ G T LH A   +     QI
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +T L + A +G  E   +LL   A     D         A      D +++ +      +
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE--HHH 248

Query: 60  RSRKH 64
               H
Sbjct: 249 HHHHH 253

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 39/269 (14%), Positives = 69/269 (25%), Gaps = 88/269 (32%)

Query: 33  GDTALHYAAFGNKPDAIQ--INSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPE 90
            ++ L  AA  N   A+   +     G    ++    E                      
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFE--GCEVHQRGAMGE---------------------- 38

Query: 91  TPMLNMKFIPRMNEDMLDTP--------SAECSGILIKQDFVLLRNGCNVNIQDNNQDTP 142
                             T         + E + +L++    L+        +     T 
Sbjct: 39  ------------------TALHIAALYDNLEAAMVLMEAAPELVFEPMTS--ELYEGQTA 78

Query: 143 MHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV 202
           +H AV      +   LL+            G ++        + + T  +     +    
Sbjct: 79  LHIAVINQNVNLVRALLAR-----------GASV--------SARATGSVFHYRPH---- 115

Query: 203 PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ----TSVI 258
                G  PL  A      EIV LL+E +  +I A D    T L   + Q        + 
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMY 174

Query: 259 NYLMLRD------VALDIQDIDGNGLLHF 281
           N L+  D          + +  G      
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 8/121 (6%)

Query: 177 LNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEK----Y 231
           L  A    +++   K+L        V  + + G T LH+A   D++E   +L+E      
Sbjct: 7   LLLAAKENDVQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKT 291
              + +   + +T L  AV     +++  L+ R  ++  +                + + 
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR-PHNLIYYGEH 123

Query: 292 P 292
           P
Sbjct: 124 P 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 92.5 bits (231), Expect = 5e-22
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 12/160 (7%)

Query: 124 VLLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAV 181
           + L N   ++N  D++  +P+H A  +G   +  +L+     +N+   N      L+ A 
Sbjct: 23  LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNRGDDTPLHLAA 80

Query: 182 LRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
             G+  + +K+L      A +      G  PLH ACF    ++ E LV      ++  + 
Sbjct: 81  SHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNK 136

Query: 241 KKRTPLMAAVGQGQTSVINYLMLR--DV-ALDIQDIDGNG 277
               P+  A    +  +         ++  +  +D    G
Sbjct: 137 YGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 82.5 bits (205), Expect = 2e-18
 Identities = 33/266 (12%), Positives = 68/266 (25%), Gaps = 104/266 (39%)

Query: 1   KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSG 57
              +     +G    + + L      +   DD G + LH+A    +   ++  I     G
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MR--G 62

Query: 58  ANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP------- 110
           A                                   +N+      N    DTP       
Sbjct: 63  AR----------------------------------INVM-----NRGD-DTPLHLAASH 82

Query: 111 -SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE 169
              +    L++          ++N  + + + P+H A   G +++   L+++        
Sbjct: 83  GHRDIVQKLLQ-------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-------- 127

Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
              G  +        ++                     G  P+  A       + E   +
Sbjct: 128 ---GALV--------SI-----------------CNKYGEMPVDKAKAPLRELLRERAEK 159

Query: 230 KYKVNINALDLKKRTPLMAAVGQGQT 255
               N+N        P      +G T
Sbjct: 160 M-GQNLNR------IPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.2 bits (194), Expect = 5e-17
 Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 36/146 (24%)

Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
                  +     +G      L L +             N LN                 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDN-----------TENDLNQ---------------- 34

Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
                       GF+PLH AC      +VE+L+ +    IN ++    TPL  A   G  
Sbjct: 35  --------GDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHR 85

Query: 256 SVINYLMLRDVALDIQDIDGNGLLHF 281
            ++  L+     ++  +  GN  LH+
Sbjct: 86  DIVQKLLQYKADINAVNEHGNVPLHY 111

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 94.2 bits (235), Expect = 6e-22
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 12/161 (7%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
            + +G  V   +      + D+  +G  ++   ++    + +L   N +G   L+ AV  
Sbjct: 24  RIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVCA 80

Query: 184 GNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK- 241
           G+ ++ +    L +    V    SDG+TPLH A   +++++ + LVE     + A+    
Sbjct: 81  GHTEIVK---FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSD 136

Query: 242 --KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
                     + +G T    +L      + I +      L 
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 93.4 bits (233), Expect = 1e-21
 Identities = 40/252 (15%), Positives = 72/252 (28%), Gaps = 48/252 (19%)

Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNMKVTEKILA 194
           +      +         +     ++H   V     N     +L  + L G   + ++I+ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 195 LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ 254
              + +      +G T LH A    H EIV+ LV+   VN+NA D    TPL  A     
Sbjct: 59  EVDDPSL--PNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNN 115

Query: 255 TSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNE 314
             V  +L+    A+                +     T  ++                   
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ------------------- 156

Query: 315 HGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKV 374
                    FL      + + N      L              ++  +   +L  +    
Sbjct: 157 ---------FLYGVQEKMGIMNKGVIYAL-------------WDYEPQNDDELPMKEGDC 194

Query: 375 VTAISQLALDEK 386
           +T I +   DE 
Sbjct: 195 MTIIHREDEDEI 206

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 32/298 (10%), Positives = 74/298 (24%), Gaps = 100/298 (33%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
           +  L         +  +  +A G  V + +      L  ++   + D +Q         +
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE--VDD 62

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--SAECSG- 116
                                              ++      N++ + T   +A C+G 
Sbjct: 63  ----------------------------------PSLP-----NDEGI-TALHNAVCAGH 82

Query: 117 -----ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
                 L++        G NVN  D++  TP+H A +    ++   L+            
Sbjct: 83  TEIVKFLVQF-------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES---------- 125

Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGF--TPLHVACFNDHIEIVELLVE 229
            G  +                             SD              + +  + L  
Sbjct: 126 -GAAV--------FAM----------------TYSDMQTAADKCEEMEEGYTQCSQFLYG 160

Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN 287
             +  +  ++      L     Q    +    M     + I   +    + + + + N
Sbjct: 161 V-QEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEWWWARLN 214

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 32/224 (14%), Positives = 52/224 (23%), Gaps = 82/224 (36%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T LH     G  E +  L+  G  V   D  G T LH AA  N     +       GA 
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES--GAA 128

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSA------- 112
                                                  +  M    + T +        
Sbjct: 129 ---------------------------------------VFAMTYSDMQTAADKCEEMEE 149

Query: 113 ---ECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE 169
              +CS  L             + I +      + D   +  +E   L +   +    + 
Sbjct: 150 GYTQCSQFLYGV-------QEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIH 199

Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLH 213
                        R +    E   A   +        +G+ P +
Sbjct: 200 -------------REDEDEIEWWWARLND-------KEGYVPRN 223

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 87.8 bits (219), Expect = 6e-21
 Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 37/138 (26%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +LL  G +VN +D N  TP+H A   G  E+  LLL             G ++       
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADV------- 61

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
                       N       K  +G TPLH+A  N H+E+V+LL+E    ++NA D   R
Sbjct: 62  ------------NA------KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGR 102

Query: 244 TPLMAAVGQGQTSVINYL 261
           TPL  A   G   V+  L
Sbjct: 103 TPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 71.2 bits (176), Expect = 5e-15
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 37/141 (26%)

Query: 141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
           TP+H A   G  E+  LLL             G ++                   N    
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-----------GADV-------------------NA--- 30

Query: 201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY 260
              K  +G TPLH+A  N H+E+V+LL+E    ++NA D   RTPL  A   G   V+  
Sbjct: 31  ---KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 261 LMLRDVALDIQDIDGNGLLHF 281
           L+     ++ +D +G   LH 
Sbjct: 87  LLEAGADVNAKDKNGRTPLHL 107

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 69.7 bits (172), Expect = 1e-14
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
           +G TPLH+A  N H+E+V+LL+E    ++NA D   RTPL  A   G   V+  L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 267 ALDIQDIDGNGLLHF 281
            ++ +D +G   LH 
Sbjct: 60  DVNAKDKNGRTPLHL 74

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.0 bits (108), Expect = 6e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
          +T LH+ A  G +E + +LL  GA V   D  G T LH AA     + +++      GA+
Sbjct: 3  RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GAD 60

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 89.5 bits (223), Expect = 8e-21
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
                  +V    +  +TP   A  K  E+    LL   +V+    +  G   L +    
Sbjct: 32  PSSYIAADVV---SEYETPWWTAARKADEQALSQLLEDRDVDA--VDENGRTALLFVAGL 86

Query: 184 GNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
           G+ K    +     + +         G T LH+A      E+VE LVE    +I   D +
Sbjct: 87  GSDKCVRLLAEAGADLDHRD---MRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDER 142

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDI 273
             T L  A    +T+     M     + ++ +
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.8 bits (216), Expect = 7e-20
 Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 15/158 (9%)

Query: 128 NGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMK 187
           N    +                G     +        +     S+       A  + + +
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AAD---VVSEYETPWWTAARKADEQ 58

Query: 188 VTEKILA---LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK-KR 243
              ++L    ++          +G T L         + V LL E    +++  D++   
Sbjct: 59  ALSQLLEDRDVDA------VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGL 111

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           T L  A G  +  V+  L+     ++++D  G   L  
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 58/170 (34%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +T     A +   + L+ LL     V   D+ G TAL + A       +++      GA+
Sbjct: 45  ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GAD 101

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
                                             L+ +     +     T          
Sbjct: 102 ----------------------------------LDHR-----DMRGGLTALHMAAGYVR 122

Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
            E    L++        G ++ ++D    T +  A        +   +  
Sbjct: 123 PEVVEALVE-------LGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
            T LH+ A     E +  L+  GA +   D+ G TAL  A    K            G  
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF--GRR 168

Query: 60  RSRKHIYK 67
              + +  
Sbjct: 169 IGLEKVIN 176

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 8/50 (16%), Positives = 10/50 (20%), Gaps = 3/50 (6%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
              I    G            A V       +T    AA      A+  
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQ 62

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.8 bits (219), Expect = 1e-20
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 11/144 (7%)

Query: 141 TPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL--NR 197
             + +A   G ++   +L+++         +  G + L+ A   G+   TE +L    +R
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 198 NLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSV 257
           +     +T    TPLH+A    H  IVE+L++    ++NA D+ K T L  A       V
Sbjct: 61  DA----RTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEV 115

Query: 258 INYLMLRDVALDIQDIDGNGLLHF 281
           +  L+     +  Q          
Sbjct: 116 VELLIKYGADVHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 85.5 bits (213), Expect = 7e-20
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 37/138 (26%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           VLLR G + + +     TP+H A ++G   I  +LL H           G ++       
Sbjct: 52  VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-----------GADV------- 93

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
            N                  K     T LH A  ++H E+VELL+ KY  +++      +
Sbjct: 94  -NA-----------------KDMLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCK 134

Query: 244 TPLMAAVGQGQTSVINYL 261
           T    ++  G   +   L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.1 bits (186), Expect = 4e-16
 Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 95/236 (40%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
              L   A  G  +E+ IL+A GA     D  G + LH AA        ++      G +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVS 59

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
           R  +                                             TP         
Sbjct: 60  RDARTKVDR----------------------------------------TPLHMAASEGH 79

Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
           A    +L+K       +G +VN +D  + T +H A     +E+  LL+ +          
Sbjct: 80  ANIVEVLLK-------HGADVNAKDMLKMTALHWATEHNHQEVVELLIKY---------- 122

Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
            G ++                   +       ++    T   ++  N + ++ E+L
Sbjct: 123 -GADV-------------------HT------QSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
           D    L  A      + V +L+          D    +PL  A   G  S    L+   V
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN-GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 267 ALDIQDIDGNGLLHF 281
           + D +       LH 
Sbjct: 59  SRDARTKVDRTPLHM 73

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.8 bits (211), Expect = 1e-19
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 37/138 (26%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            LL+NG + N++D+   TP+H+A   G  ++  LLL H              +       
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-----------KALV------- 69

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
                       N             +PLH A  N H++IV+LL+     + NA+++   
Sbjct: 70  ------------NT------TGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGL 110

Query: 244 TPLMAAVGQGQTSVINYL 261
            P+     +   S++   
Sbjct: 111 RPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 38/153 (24%)

Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV 188
           G +    ++  +T +H A  KG       LL +           G +             
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQN-----------GSDP------------ 36

Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
                  N       K   G+TPLH AC + H+++VELL++  K  +N    +  +PL  
Sbjct: 37  -------NV------KDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHD 82

Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           A   G   ++  L+    + +  +I G   + +
Sbjct: 83  AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVN 165
           +LL  G + N  +     P+     +  + + LL   +   +
Sbjct: 94  LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGN 44
          +TLLHI + +G +  +  LL  G+     D AG T LH A    
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG 54

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T LH     G ++ + +LL   A V       D+ LH AA     D +++  S+  GA+
Sbjct: 44  WTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY--GAS 101

Query: 60  RSRKHIY 66
           R+  +I+
Sbjct: 102 RNAVNIF 108

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            + LH  A  G V+ + +LL+ GA     +  G   + Y    +    + +
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 88.7 bits (220), Expect = 1e-19
 Identities = 42/293 (14%), Positives = 75/293 (25%), Gaps = 76/293 (25%)

Query: 1   KTLLHILAYQGCVEELNILL-------ARGACVYYPDDA-GDTALHYAAFGNKPDAIQIN 52
           +  +     Q   +EL  LL        R     + D   G T L  A            
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT- 72

Query: 53  SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSA 112
                       +   R      + V         + +T +     I     +M      
Sbjct: 73  --------IALLLDVARKTDSLKQFVNASYTDSYYKGQTAL----HIAIERRNM------ 114

Query: 113 ECSGILIKQDFV--LLRNGCNVNIQDNNQ--------------DTPMHDAVAKGFEEIQL 156
                      V  L+ NG +V    N                + P+  A       I  
Sbjct: 115 ---------TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165

Query: 157 LLLSH--PEVNLYLENSKGFNILNYAVLRGNMKVTEKILA-------------LNRNLAT 201
            LL +     ++   +S G  +L+  V   +  V                   L+  L  
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225

Query: 202 VP-KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQG 253
                  G TPL +A  +  I ++  ++++        ++ +     AA    
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 86.8 bits (215), Expect = 4e-19
 Identities = 41/229 (17%), Positives = 74/229 (32%), Gaps = 39/229 (17%)

Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNL-------YLENSKGFNILNYAV 181
                         + DAVA+   +    LL   + +        + +   G   L  A+
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 182 L---RGNMKVTEKILALNRNLATVP---------KTSDGFTPLHVACFNDHIEIVELLVE 229
           L    G       +L + R   ++              G T LH+A    ++ +V LLVE
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

Query: 230 KYKVNINALD--------------LKKRTPLMAAVGQGQTSVINYLM---LRDVALDIQD 272
               ++ A                     PL  A    Q +++ +L+    +   +  +D
Sbjct: 123 N-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 273 IDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV 321
             GN +LH L    +   T    +    +Y E L +G   +    L  +
Sbjct: 182 SVGNTVLHALVEVAD--NTVDNTKFVTSMYNEILILGAKLHPTLKLEEI 228

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 30/236 (12%), Positives = 57/236 (24%), Gaps = 84/236 (35%)

Query: 2   TLLHILAYQGCVEELNILLARGACV--------------YYPDDAGDTALHYAAFGNKPD 47
           T LHI   +  +  + +L+  GA V                    G+  L  AA  N+  
Sbjct: 103 TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162

Query: 48  AIQ--INSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED 105
            ++  + +    A+ S +                           T +  +  +     D
Sbjct: 163 IVKFLLQNSWQPADISARDSVG----------------------NTVLHALVEVADNTVD 200

Query: 106 MLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEV 164
                ++  + ILI     L        I +    TP+  A + G   +   +L      
Sbjct: 201 NTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL------ 253

Query: 165 NLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH 220
                  +  +                                     H A  + H
Sbjct: 254 ------QREIH--------------------------------EPECRHAAAHHHH 271

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 27/161 (16%), Positives = 45/161 (27%), Gaps = 41/161 (25%)

Query: 125 LLRNGCNVNIQDNNQDTPM---HDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
           +LR   +       +  P+    DA   G  E+    +               +      
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-----------MNDP----- 47

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
              +                     +G T LH A    +  IV+ L+     N+N+ D  
Sbjct: 48  ---SQ-----------------PNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSH 86

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDI-DGNGLLHF 281
             TPL  A     T +   L+    A+    + DG      
Sbjct: 87  GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 40/160 (25%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
             ++   + +  +    T +H+A+      I   L++            G N+       
Sbjct: 39  QAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-----------GANV------- 80

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK- 242
                       N         S G+TPLH A   +   I   LV+     I A  L   
Sbjct: 81  ------------NS------PDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDG 121

Query: 243 RTPLMAA--VGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
            T         +G      YL   + ++ + +      L 
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 39/160 (24%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            L+  G NVN  D++  TP+H A +     I + L+ H           G  I       
Sbjct: 72  FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH-----------GAAI------- 113

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVA--CFNDHIEIVELLVEKYKVNINALDLK 241
                                 SDG T           + +    L +  + ++  ++  
Sbjct: 114 -FAT----------------TLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSG 155

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
               L           +++     V +  +D        +
Sbjct: 156 AVYALWDY-SAEFGDELSFREGESVTVLRRDGPEETDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 29/226 (12%), Positives = 47/226 (20%), Gaps = 76/226 (33%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T LH          ++ L+  GA V  PD  G T LH AA  N          H  GA 
Sbjct: 55  ITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH--GAA 112

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
                +                      +  T             D              
Sbjct: 113 IFATTLS---------------------DGATAFEKCDPYREGYADCAT----------- 140

Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
                L     ++ + ++     + D  A+  +E+                 +   +L  
Sbjct: 141 ----YLADVEQSMGLMNSGAVYALWDYSAEFGDELSFR------------EGESVTVLR- 183

Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
                                   +     T    A  +     V 
Sbjct: 184 ------------------------RDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            LL   A  G +E +   +        P++ G TALH A  G     +    +   GAN
Sbjct: 22 LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA--GAN 79

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 23/168 (13%), Positives = 40/168 (23%), Gaps = 42/168 (25%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDA-GDTALHYAAFGNKPDAIQINSHVSGAN 59
            T LH  A          L+  GA ++    + G TA        +       ++++   
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP-YREGYADCATYLADVE 146

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
                           + +     L        + +               SAE    L 
Sbjct: 147 ----------------QSM----GLMNSGAVYALWDY--------------SAEFGDELS 172

Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI--QLLLLSHPEVN 165
                       V  +D  ++T    A   G E    +      P V 
Sbjct: 173 ----FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK 216

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 82.9 bits (206), Expect = 7e-19
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 18/142 (12%)

Query: 126 LRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRG 184
           +      +         +  A A+G  E    LL      N    NS G   +   +  G
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNA--PNSYGRRPIQVMM-MG 55

Query: 185 NMKVTEKILA----LNRNLATVPKTSDGFT-PLHVACFNDHIEIVELLVEKYKVNINALD 239
           + +V E +L      N             T P+H A     ++ + +L       ++  D
Sbjct: 56  SARVAELLLLHGAEPNC------ADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRD 108

Query: 240 LKKRTPLMAAVGQGQTSVINYL 261
              R P+  A   G   V  YL
Sbjct: 109 AWGRLPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNI-LNYAVL 182
           LL  G N N  ++    P+      G   +  LLL H  E N    +       ++ A  
Sbjct: 31  LLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNC--ADPATLTRPVHDAAR 87

Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            G +        L+R  A +  + + G  P+ +A    H ++   L              
Sbjct: 88  EGFLDTLV---VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRG---- 139

Query: 242 KRTPLMAAVGQGQTSV 257
                     +G + +
Sbjct: 140 -SNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 65.6 bits (161), Expect = 9e-13
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
                   L  A     +E V  L+E    N NA +   R P+   +  G   V   L+L
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLL 65

Query: 264 RDVALDIQDIDG 275
                +  D   
Sbjct: 66  HGAEPNCADPAT 77

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 124 VLLRNGCNVNIQDNNQDT-PMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +LL +G   N  D    T P+HDA  +GF +  ++L       L + ++ G   ++ A  
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEE 120

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
            G+  V   + A             G     +       +I +
Sbjct: 121 LGHRDVARYLRA---AAGGT----RGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.0 bits (118), Expect = 5e-07
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK 45
            L   A +G VEE+  LL  GA    P+  G   +     G+ 
Sbjct: 14 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA 57

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 4   LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           +H  A +G ++ L +L   GA +   D  G   +  A      D  + 
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 83.4 bits (207), Expect = 4e-18
 Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 17/154 (11%)

Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNMKVTEK 191
           +                G     +       +V      S+       A  + + +   +
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-----SEYETPWWTAARKADEQALSQ 63

Query: 192 ILA---LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK-KRTPLM 247
           +L    ++          +G T L         + V LL E    +++  D++   T L 
Sbjct: 64  LLEDRDVDA------VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALH 116

Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            A G  +  V+  L+     ++++D  G   L  
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 83.0 bits (206), Expect = 5e-18
 Identities = 32/262 (12%), Positives = 69/262 (26%), Gaps = 75/262 (28%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +T     A +   + L+ LL     V   D+ G TAL + A       +++      GA+
Sbjct: 46  ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GAD 102

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
                                             L+ +     +     T          
Sbjct: 103 ----------------------------------LDHR-----DMRGGLTALHMAAGYVR 123

Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
            E    L++        G ++ ++D    T +  A        +   +      +     
Sbjct: 124 PEVVEALVE-------LGADIEVEDERGLTALELAREILKTTPKGNPMQF-GRRI---GL 172

Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKY 231
           +    +    +    +V ++I+          K   G    ++  + D  +   +    +
Sbjct: 173 EKVINVLEGQVFEYAEV-DEIVE---------KRGKGKDVEYLVRWKDGGDCEWVKG-VH 221

Query: 232 KVNINALDLKKRTPLMAAVGQG 253
                A D      L  AV + 
Sbjct: 222 VAEDVAKD--YEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 20/160 (12%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
            L    +V+  D N  T +      G ++   LL     +++       G   L+ A   
Sbjct: 63  QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-GLTALHMAAGY 121

Query: 184 GNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
              +V E ++ L  +  +    +   G T L +A            ++ +   I     +
Sbjct: 122 VRPEVVEALVELGADIEV----EDERGLTALELAREILKTTPKGNPMQ-FGRRIGL---E 173

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           K   ++         V   +         +   G  + + 
Sbjct: 174 KVINVLEGQVFEYAEVDEIV--------EKRGKGKDVEYL 205

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 77/232 (33%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPD-DAGDTALHYAAFGNKPDAIQ--INSHVSG 57
           +T L  +A  G  + + +L   GA + + D   G TALH AA   +P+ ++  +     G
Sbjct: 78  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-EL--G 134

Query: 58  ANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP------- 110
           A+                                  + ++     +E  L T        
Sbjct: 135 AD----------------------------------IEVE-----DERGL-TALELAREI 154

Query: 111 -SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE 169
                 G  ++        G  + ++       + +     + E+           +  +
Sbjct: 155 LKTTPKGNPMQ-------FGRRIGLEKV---INVLEGQVFEYAEV---------DEIVEK 195

Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHI 221
             KG ++      +         +        V K  D    L  A     I
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEW--VKGVHVAEDVAK--DYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 19/88 (21%)

Query: 208 GFTPLHVA--------------CFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQG 253
           G     +                 + H             ++ +   +  TP   A  + 
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADVVS---EYETPWWTAARKA 56

Query: 254 QTSVINYLMLRDVALDIQDIDGNGLLHF 281
               ++ L L D  +D  D +G   L F
Sbjct: 57  DEQALSQL-LEDRDVDAVDENGRTALLF 83

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 8/50 (16%), Positives = 10/50 (20%), Gaps = 3/50 (6%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
              I    G            A V       +T    AA      A+  
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQ 63

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.3 bits (197), Expect = 4e-18
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 37/148 (25%)

Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKI 192
                + +TP+H+A   G  E    LLS            G ++                
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSK-----------GADV---------------- 35

Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQ 252
              N       ++ DG TPLH+A  N H EIV+LL+ K   ++NA      TP   A   
Sbjct: 36  ---NA------RSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAKKN 85

Query: 253 GQTSVINYLMLRDVALDIQDIDGNGLLH 280
           G   ++  L  +   ++ +    +   H
Sbjct: 86  GHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 37/123 (30%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            LL  G +VN +  + +TP+H A   G  EI  LLL+            G ++       
Sbjct: 27  KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-----------GADV------- 68

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
                       N       ++ DG TP H+A  N H EIV+LL  K   ++NA      
Sbjct: 69  ------------NA------RSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSS 109

Query: 244 TPL 246
              
Sbjct: 110 HHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 68.2 bits (168), Expect = 3e-14
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
           DG TPLH A  N H E V+ L+ K   ++NA      TPL  A   G   ++  L+ +  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 267 ALDIQDIDGNGLLHF 281
            ++ +  DGN   H 
Sbjct: 67  DVNARSKDGNTPEHL 81

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           T LH  A  G  EE+  LL++GA V      G+T LH AA     + +++
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T LH+ A  G  E + +LLA+GA V      G+T  H A      + +++ ++   GA+
Sbjct: 43  NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK--GAD 100

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.4 bits (197), Expect = 5e-18
 Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 37/134 (27%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
            +  G +VN        P+H A   G  EI   LL             G +I        
Sbjct: 26  YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-----------GADI-------- 66

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
                      N             TPL  A +  H+  V+LL+ K   +         T
Sbjct: 67  -----------NA------PDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLT 108

Query: 245 PLMAAVGQGQTSVI 258
              A   Q   +++
Sbjct: 109 AFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 39/147 (26%)

Query: 136 DNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILA 194
            +  D     A+  G  +  +  +            +KG ++                  
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYV------------AKGEDV------------------ 33

Query: 195 LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ 254
            NR          G  PLH A     +EI+E L+ K   +INA D    TPL++AV +G 
Sbjct: 34  -NR------TLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGH 85

Query: 255 TSVINYLMLRDVALDIQDIDGNGLLHF 281
            S +  L+ +     ++  DG      
Sbjct: 86  VSCVKLLLSKGADKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 71.7 bits (177), Expect = 3e-15
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 203 PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
           P  S        A  N  ++ V+  V K   ++N      R PL  A   GQ  ++ +L+
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 263 LRDVALDIQDIDGNGLLHF 281
           L+   ++  D      L  
Sbjct: 61  LKGADINAPDKHHITPLLS 79

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 38/103 (36%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
            LL  G ++N  D +  TP+  AV +G     +LLL            SKG +       
Sbjct: 58  FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL------------SKGADK------ 99

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
                                K  DG T            +++
Sbjct: 100 -------------TV------KGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
           +  LH  A  G +E L  LL +GA +  PD    T L  A +      +++  S   GA+
Sbjct: 41  RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK--GAD 98

Query: 60  RSRK 63
           ++ K
Sbjct: 99  KTVK 102

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
                   G ++E+   +A+G  V    + G   LHYAA   + + ++ 
Sbjct: 9  KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF 58

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.9 bits (195), Expect = 4e-17
 Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 13/126 (10%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL------LLLSHPEVNLYLENSKGFNILN 178
           L+  G ++  +     T        G  +I        + L     ++         ++ 
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVF 119

Query: 179 YAVLRGNMKVTEKI----LALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKV 233
             +    +   E I    L  +++   +  K   G T L           ++++ + Y  
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED-YIK 178

Query: 234 NINALD 239
             N  +
Sbjct: 179 KYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.5 bits (186), Expect = 5e-16
 Identities = 16/153 (10%), Positives = 44/153 (28%), Gaps = 20/153 (13%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL----LLLSH-PEVNLYLENSKGFNILNY 179
           L   G     +   +   ++D +    +E +      L++   ++       +G  +   
Sbjct: 25  LFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS--RTKEGTTLFFP 81

Query: 180 AVLRGNMKVTEKILALNRNL----ATV-PKTSDGFTPLHVACFNDHIE------IVELLV 228
               G   +T     L +      A +          +    FN  ++      + +L+ 
Sbjct: 82  LFQGGGNDITGT-TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140

Query: 229 EKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
            +  + +   D    T L       +   +  +
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.4 bits (178), Expect = 7e-15
 Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 18/159 (11%)

Query: 138 NQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSK-GFNILNYAVLRGNMKVTEKILAL 195
           ++   +  A   G +E+   L     E    +  S   +++L         K++  ++  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 196 NRNLATVPKTSDGFTPLHVACFNDH------IEIVELLVEKYKVNINALDLKKRTPLMAA 249
             ++ +  +T +G T                 E+ ++ +EK   +I AL    +  +   
Sbjct: 65  GADIKS--RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKN 121

Query: 250 VGQGQTSVINYLMLRDVAL-------DIQDIDGNGLLHF 281
           +          + L  +          I+D  G   L F
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 15/180 (8%), Positives = 45/180 (25%), Gaps = 32/180 (17%)

Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKY 231
            +  ++ A + G  +   ++            K++  +  L         +I   L+ K 
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK- 64

Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVIN------YLMLRDVALDIQDIDGNGLLHFLFIK 285
             +I +   +  T        G   +          + +   +         ++      
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF----- 119

Query: 286 KNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDL 345
                                      +E+ ++    L   + G  L +++      L+ 
Sbjct: 120 -------------------KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 17/163 (10%), Positives = 39/163 (23%), Gaps = 37/163 (22%)

Query: 4   LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHV-----SGA 58
           L     +   +    L+ +GA +      G T       G   D              GA
Sbjct: 46  LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105

Query: 59  NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
           + +  +   +                        +   K I     D         + ++
Sbjct: 106 DITALYKPYK----------------------IVV--FKNIFNYFVDE--------NEMI 133

Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
                +  ++G  + I+D    T +             ++  +
Sbjct: 134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 6/61 (9%)

Query: 1   KTLLHILAYQG------CVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSH 54
            TL   L   G        E   I L +GA +          +    F    D  ++   
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135

Query: 55  V 55
            
Sbjct: 136 Y 136

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 1   KTLLHILAYQGCVEELN-------ILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           K ++    +   V+E         I    G  +   D  G TAL +     KP A+++
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKM 172

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 80.6 bits (199), Expect = 4e-17
 Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 35/160 (21%)

Query: 125 LLRNGCNVNIQDNNQD-------------TPMHDAVAKGFEEIQLLLLSHPEV--NLYLE 169
           L+ NG +V+++   +               P+  A      ++   LL +P    +L   
Sbjct: 109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT 168

Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
           +S G  +L+  V+                       S   + L +  ++  +++   L  
Sbjct: 169 DSLGNTVLHALVMIA-------------------DNSPENSALVIHMYDGLLQMGARLCP 209

Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD 269
                    + +  TPL  A  +G+  +  +++ R+ +  
Sbjct: 210 T-VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.8 bits (197), Expect = 7e-17
 Identities = 36/238 (15%), Positives = 70/238 (29%), Gaps = 64/238 (26%)

Query: 127 RNGCNVNIQDNNQDTPMHDAVA---KGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
               +   + +   T +  AV     G     + LL   + +   +        +     
Sbjct: 31  YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD----- 85

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK- 242
                               +   G + LH+A     ++ V+LLVE    +++     + 
Sbjct: 86  --------------------EFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRF 124

Query: 243 ------------RTPLMAAVGQGQTSVINYLM---LRDVALDIQDIDGNGLLHFLFI--K 285
                         PL  A    Q  V+ YL+    +  +L+  D  GN +LH L +   
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

Query: 286 KNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPL 343
            +   + +       +Y+  L +G               L        + N+    PL
Sbjct: 185 NSPENSALVIH----MYDGLLQMGA-------------RLCPTVQLEEISNHQGLTPL 225

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.1 bits (177), Expect = 3e-14
 Identities = 41/250 (16%), Positives = 71/250 (28%), Gaps = 70/250 (28%)

Query: 1   KTLLHILA---YQGCVEELNILLARGACVYYP-----------DDAGDTALHYAAFGNKP 46
           KT L         G    +  LL        P              G +ALH A      
Sbjct: 44  KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103

Query: 47  DAIQI-NSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED 105
             +++   +  GA+          H        Q+         E P+            
Sbjct: 104 QCVKLLVEN--GAD---------VHLRACGRFFQKHQGTCFYFGELPLS----------- 141

Query: 106 MLDTPSAECSGILIKQDFV--LLRNG---CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS 160
                 A C+    + D V  LL N     ++   D+  +T +H  V             
Sbjct: 142 -----LAACTK---QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA---------- 183

Query: 161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH 220
                   +NS   + L   +  G +++  ++    +          G TPL +A     
Sbjct: 184 --------DNSPENSALVIHMYDGLLQMGARLCPTVQLEEI--SNHQGLTPLKLAAKEGK 233

Query: 221 IEIVELLVEK 230
           IEI   ++++
Sbjct: 234 IEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 21/180 (11%), Positives = 49/180 (27%), Gaps = 41/180 (22%)

Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
                          +     + +H A+ K   +   LL+ +           G ++   
Sbjct: 71  DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-----------GADV--- 116

Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK--YKVNINA 237
                +++   +    ++          G  PL +A      ++V  L+E      ++ A
Sbjct: 117 -----HLRACGRFFQKHQGTCFY----FGELPLSLAACTKQWDVVTYLLENPHQPASLEA 167

Query: 238 LD----------------LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            D                  + + L+  +  G   +   L       +I +  G   L  
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 80.6 bits (199), Expect = 4e-17
 Identities = 40/275 (14%), Positives = 79/275 (28%), Gaps = 65/275 (23%)

Query: 1   KTLLHILAYQGCVEELN----ILLARGACV----YYPDDAGDTALHYAAFGNKPDAIQIN 52
           + +L  +  +G  + L      LL     +    +     G T L  A            
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT- 64

Query: 53  SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSA 112
                       +          E +  P        +T +     I R  +        
Sbjct: 65  --------IPILLDIAEKTGNMREFINSPFRDVYYRGQTAL--HIAIERRCKHY-----V 109

Query: 113 ECSGILIKQDFVLLRNGCNVNIQDNNQ--------------DTPMHDAVAKGFEEIQLLL 158
           E          +L+  G +V+ Q   +              + P+  A       I   L
Sbjct: 110 E----------LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 159 LSHP--EVNLYLENSKGFNILNYAVLRG-NMKVTEKIL-----ALNRNLATVPKTS---- 206
             +   + +L  ++S+G  +L+  V    N +   K +      L    A +   +    
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219

Query: 207 ----DGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
               DG +PL +A     I I + ++ + ++   A
Sbjct: 220 LLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAA 253

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 76.7 bits (189), Expect = 8e-16
 Identities = 47/217 (21%), Positives = 73/217 (33%), Gaps = 39/217 (17%)

Query: 141 TPMHDAVAKG----FEEIQLLLLSH-PEVN--LYLENSKGFNILNYAVL---RGNMKVTE 190
             + D V++G     E +   LL+H   +    + E S G   L  A+L    G      
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 191 KILALNRNLATVP---------KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            +L +      +              G T LH+A        VELLVEK   +++A    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARG 125

Query: 242 K--------------RTPLMAAVGQGQTSVINYLM---LRDVALDIQDIDGNGLLHFLFI 284
           +                PL  A    Q  +++YL     +   L  QD  GN +LH L  
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185

Query: 285 KKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV 321
             +   T    +    +Y+  L           L A+
Sbjct: 186 IAD--NTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 26/166 (15%)

Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE 190
                     T +H A+ +  +    LL+             G ++        + +   
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEK-----------GADV--------HAQARG 125

Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK--YKVNINALDLKKRTPLMA 248
           +                G  PL +A   +   IV  L E    + ++   D +  T L A
Sbjct: 126 RFFQPKDE---GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182

Query: 249 AVGQGQTSVINYLMLRDVALDI--QDIDGNGLLHFLFIKKNFYKTP 292
            V     +  N   +  +   +  +        +   +  N   +P
Sbjct: 183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.1 bits (191), Expect = 5e-17
 Identities = 26/154 (16%), Positives = 42/154 (27%), Gaps = 39/154 (25%)

Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV 188
              +++   + D  +  A A+G  E    LL             G +             
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-----------GADP------------ 38

Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT-PLM 247
                  N           G  P+ V       ++ ELL+       N  D    T P+ 
Sbjct: 39  -------NA------LNRFGRRPIQVMMMG-SAQVAELLLLH-GAEPNCADPATLTRPVH 83

Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            A  +G    +  L      LD+ D  G   +  
Sbjct: 84  DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 15/112 (13%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNI-LNYAVL 182
           LL  G + N  +     P+      G  ++  LLL H  E N    +       ++ A  
Sbjct: 31  LLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNC--ADPATLTRPVHDAAR 87

Query: 183 RGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
            G +     +      L+         + G  P+ +A    H +I   L   
Sbjct: 88  EGFLDTLVVLHRAGARLDV------CDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 2  TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK 45
            L   A +G VE +  LL  GA     +  G   +     G+ 
Sbjct: 14 AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA 57

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
           VL R G  +++ D     P+  A  +G  +I   L + 
Sbjct: 96  VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 4   LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           +H  A +G ++ L +L   GA +   D  G   +  A      D  + 
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 79.3 bits (195), Expect = 3e-16
 Identities = 32/267 (11%), Positives = 73/267 (27%), Gaps = 57/267 (21%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYP-DDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
              H+       E  +        +  P D+ G+T LH+       + ++    H  G+N
Sbjct: 99  QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSN 156

Query: 60  RSRKHIYKER--HRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGI 117
           R       E    + V +           +                              
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEAL------------------------------ 186

Query: 118 LIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKG------------FEEIQLLLLSHPEVN 165
                  L      + ++D+   T +H  +                + +   ++      
Sbjct: 187 -------LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239

Query: 166 LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIV 224
           +    ++  +  N         + E +         +  + S+G T L++A    +I IV
Sbjct: 240 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 299

Query: 225 ELLVEKYKVNINALDLKKRTPLMAAVG 251
           + L++ Y  +    +     P+    G
Sbjct: 300 DALLD-YGADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.8 bits (186), Expect = 4e-15
 Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 50/242 (20%)

Query: 125 LLRNGCNVNIQ-DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
                 N+NI  D + +TP+H   +    E+   L+ H   N    ++ G + L  AV  
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKS 174

Query: 184 GNMKVTEKILALNRNLATVP--KTSDGFTPLHVACFNDHIE------------IVELLVE 229
            N   +    AL   L      + S   T LH       +             ++  +V+
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSV---INYLMLRDVALDIQDIDGNGLLHFLFIKK 286
           K    I +   +K +      G+ + S+   ++   +    L+ QD +G+  L+      
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI----- 289

Query: 287 NFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLI 346
                   R  ++ I +                     L+ +GA   + N +  +P+D  
Sbjct: 290 ------AARLGNISIVD--------------------ALLDYGADPFIANKSGLRPVDFG 323

Query: 347 LE 348
             
Sbjct: 324 AG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 12/176 (6%)

Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
           +K    L     N N Q    +  +   +    +E+   L +    N   E         
Sbjct: 43  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNND-SSNRNSEGGSSNQQQQ 101

Query: 179 YAVLRGNMKVTEKIL---ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
           +      ++          LN N   +P    G TPLH      ++E+V+ LV+    N 
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLN---IPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNR 157

Query: 236 NALDLKKRTPLMAAVGQG----QTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN 287
              D    + L+ AV         +    L      L ++D     +LH + I   
Sbjct: 158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.2 bits (161), Expect = 7e-12
 Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 34/204 (16%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA-FGNKPD-----------A 48
            T LH L     +E +  L+  G+   Y D+ G++ L  A    N  D            
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

Query: 49  IQINS---------H--VSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMK 97
             +           H  +  +  +      + +  +    + +  N P            
Sbjct: 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE----- 246

Query: 98  FIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL 157
                 E   +  + E    +++   +       +N QD+N DT ++ A   G   I   
Sbjct: 247 -----KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301

Query: 158 LLSHPEVNLYLENSKGFNILNYAV 181
           LL +   + ++ N  G   +++  
Sbjct: 302 LLDY-GADPFIANKSGLRPVDFGA 324

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.8 bits (180), Expect = 2e-15
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 38/154 (24%)

Query: 129 GCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMK 187
           G + +    ++    + +A   G ++   +L+++           G ++        N  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN-----------GADV--------NA- 42

Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
                           K   G TPL++A  + H+EIVE+L++    ++NA+D    TPL 
Sbjct: 43  ----------------KDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLH 85

Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            A   G   +   L+     ++ QD  G      
Sbjct: 86  LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.1 bits (160), Expect = 8e-13
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 36/106 (33%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           VLL+NG +VN  D    TP+H A   G  EI  +LL H           G ++       
Sbjct: 65  VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-----------GADV------- 106

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
            N +                    G T   ++  N + ++ E+L +
Sbjct: 107 -NAQ-----------------DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 59.3 bits (145), Expect = 6e-11
 Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 58/169 (34%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGANR 60
             L   A  G  +E+ IL+A GA V   D+ G T L+ A      + +++   +  GA+ 
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADV 73

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------SA 112
           +                                               TP          
Sbjct: 74  NAVDAIGF----------------------------------------TPLHLAAFIGHL 93

Query: 113 ECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
           E + +L+K       +G +VN QD    T    ++  G E++  +L   
Sbjct: 94  EIAEVLLK-------HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
            T L++    G +E + +LL  GA V   D  G T LH AAF    +  ++   H  GA+
Sbjct: 48  LTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH--GAD 105

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
            T LH+ A+ G +E   +LL  GA V   D  G TA   +      D  +I
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 463 ERVNYLESKISEIEEMNTCTICMERCRNTIFL-CGHG-TCDVCAKTLKFCHMCRKLIEQR 520
           ++   L+ K+ +++E   C +C E   N+ F  CGH   C+ CA  L+ C +CR  +E  
Sbjct: 3   QQTRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62

Query: 521 INI 523
            ++
Sbjct: 63  QHV 65

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRV 444
           C VC E    N    PC H V CE C+++++ C +C++ +E   
Sbjct: 21  CMVCCE-EEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQ 63

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 77.7 bits (191), Expect = 2e-15
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)

Query: 130 CNVNIQDNNQDTPMHDAVAKG----FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN 185
            + + +    +     A   G     + + LLL S   V +    ++ +     A   G+
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV--IQAENYQAFRLAAENGH 140

Query: 186 MKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKY-KVNINALDLKKRT 244
           + V  ++  L          ++ +    +A  N H+ ++  L E         +  +   
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200

Query: 245 PLM-AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIK 285
               AAVG+G  +VIN+L+   V L   +I            
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 22/155 (14%), Positives = 40/155 (25%), Gaps = 22/155 (14%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS------------HPEVNLYLENSK 172
           LL     +   + ++       V          L                ++    E  +
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277

Query: 173 GFNILNYAVLRGNMKVTEKILALN-----RNLATVPKTS-DGFTPLHVACFNDHIEIVEL 226
           GF +L   + R +  + + I  L      + LA       D    L +A    +     L
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 227 LVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
           L+    V      L K          G+  +    
Sbjct: 338 LLSIPSVL----ALTKANNYYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 34/219 (15%), Positives = 58/219 (26%), Gaps = 37/219 (16%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPD--DAGDTALHYAAFGN-KPDAIQ-INSHVSG 57
               + A  G +  LN L                  A  +AA G    + I  +      
Sbjct: 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 224

Query: 58  ANRSRKHIYKERHRTVTTEKVQRPSNLPK----------------VEPETPMLNMKF--- 98
              +  H ++   + V     +  + L +                V     +        
Sbjct: 225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 284

Query: 99  -IPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL 157
            I R +E +LD      S   IK                 + +  +  A+  G +    L
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIK-------ALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN 196
           LLS P V    +     N        G + +    +AL 
Sbjct: 338 LLSIPSVLALTKA----NNYYINETGGRLDLRA--VALE 370

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 70.3 bits (173), Expect = 5e-15
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 40/138 (28%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
            L+  G ++    ++    + +A   G ++   +L+++           G ++       
Sbjct: 12  GLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMAN-----------GADV------- 50

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
                               K  +G TPLH+A  N H+E+V+LL+E    ++ A D   +
Sbjct: 51  ------------AA------KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGK 91

Query: 244 TPLMAAVGQGQTSVINYL 261
           T    ++  G   +   L
Sbjct: 92  TAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 215 ACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
              + H      LV +   ++ +        L+ A   GQ   +  LM     +  +D +
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 275 GNGLLHF 281
           G+  LH 
Sbjct: 57  GSTPLHL 63

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 17/44 (38%), Positives = 20/44 (45%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGN 44
             L   A  G  +E+ IL+A GA V   D  G T LH AA   
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 69.4 bits (170), Expect = 5e-15
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 462 IERVNYLESKISEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQ 519
           +++    E ++  ++E   C ICM+R    +F+ CGH  TC  CA+ +  C MC  +I  
Sbjct: 9   LQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68

Query: 520 RINISRAFVS 529
           +    + F+S
Sbjct: 69  KQ---KIFMS 75

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRV 444
            C +C +     ++  PC H V C++C+  + KC MC T I  + 
Sbjct: 27  LCKICMD-RNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQ 70

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.9 bits (170), Expect = 1e-14
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
           +G TPLH+A  N H+E+V+LL+E    ++NA D   RTPL  A   G   V+  L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 267 ALDIQDIDGNGLLHF 281
            ++ +D +G   LH 
Sbjct: 60  DVNAKDKNGRTPLHL 74

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 67.0 bits (165), Expect = 5e-14
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 36/107 (33%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           +LL  G +VN +D N  TP+H A   G  E+  LLL             G ++       
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADV------- 61

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
                       N       K  +G TPLH+A  N H+E+V+LL+E 
Sbjct: 62  ------------NA------KDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 1e-13
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
           K  +G TPLH+A  N H+E+V+LL+E    ++NA D   RTPL  A   G   V+  L
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
          +T LH+ A  G +E + +LL  GA V   D  G T LH AA     + +++
Sbjct: 3  RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.1 bits (90), Expect = 8e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 1  KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
          +T LH+ A  G +E + +LL  GA V   D  G T LH AA     + +++
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 473 SEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINI 523
              E    C +C     N + L C H   CD C K  + C MCR+ +++   +
Sbjct: 10  PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRV 444
           +C VC   G  N +L PC H   C+ C    ++C MC+ F++   
Sbjct: 17  DCVVCQN-GTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESF 60

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 60.4 bits (144), Expect = 6e-10
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 474 EIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINISRAFVS 529
            ++E  TC +CM++  + +F+ CGH   C  CA +L+ C +CR +I+  +   R F+S
Sbjct: 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTV---RTFLS 345

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 53.8 bits (127), Expect = 8e-08
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRV 444
           C VC +    +V+  PC H V C+EC+  ++KC +C+  I+  V
Sbjct: 298 CKVCMD-KEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTV 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 5e-09
 Identities = 72/426 (16%), Positives = 116/426 (27%), Gaps = 143/426 (33%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK-------PDAIQINS 53
           + LL    Y+ C   L +L           +  +    + AF              Q+  
Sbjct: 235 RRLLKSKPYENC---LLVL----------LNVQNAK-AWNAFNLSCKILLTTRFK-QVTD 279

Query: 54  HVSGANRSRKHIYKERHRTVTTE--------KV--QRPSNLPKVEPET-PMLNMKFIPRM 102
            +S A     HI  + H    T         K    RP +LP+    T P   +  I   
Sbjct: 280 FLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAES 336

Query: 103 NEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP 162
             D L T                       N +  N D  +   +      ++      P
Sbjct: 337 IRDGLATWD---------------------NWKHVNCDK-LTTIIESSLNVLE------P 368

Query: 163 EVNLYLENSKGFNILNYAVLRGNMKVTEKILAL------------------NRNLATVPK 204
                 E  K F+ L  +V   +  +   +L+L                    +L  V K
Sbjct: 369 A-----EYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEK 419

Query: 205 TSDGFT-PLHVACFNDHIEIVEL------LVEKYKVNINALDLKKRTPL----------- 246
                T  +        +++         +V+ Y +     D     P            
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI-PKTFDSDDLIPPYLDQYFYSHIG 478

Query: 247 --MAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVP---- 300
             +  +   +       + R V LD           FL  K     T      S+     
Sbjct: 479 HHLKNIEHPE----RMTLFRMVFLD---------FRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 301 ---IYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNE-- 355
               Y+ Y+    P  E  ++ A+  FL K       EN    K  DL+    +L+ E  
Sbjct: 526 QLKFYKPYICDNDPKYE-RLVNAILDFLPKIE-----ENLICSKYTDLL--RIALMAEDE 577

Query: 356 -IMEHA 360
            I E A
Sbjct: 578 AIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 4e-08
 Identities = 92/584 (15%), Positives = 183/584 (31%), Gaps = 156/584 (26%)

Query: 5   HILAYQGCVEE----LNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
           HI+  +  V         LL++   +       +  L       + +   + S +    R
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVL-------RINYKFLMSPIKTEQR 103

Query: 61  SRKHIYK----ERHRTVTTEKVQRPSNLPKVEPET----------P--------ML---- 94
               + +    +R R     +V    N+ +++P            P        +L    
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 95  ---------NMKFIPRMNEDML-------DTPSAECSGILIKQDFVLLRNGCNVNIQ-DN 137
                    + K   +M+  +        ++P      +L     +L +   N   + D+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET----VLEMLQKLLYQIDPNWTSRSDH 219

Query: 138 NQDTPMHDAVAKGFEEIQLLLLSHPEVN--LYLEN------SKGFN----ILNYAVLRGN 185
           + +  +     +   E++ LL S P  N  L L N         FN    IL   +    
Sbjct: 220 SSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRF 274

Query: 186 MKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTP 245
            +VT+ + A      ++   S   TP          E+  LL  KY ++    DL +   
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPD---------EVKSLL-LKY-LDCRPQDLPR--- 320

Query: 246 LMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKK-NFYKTPITREKSVPIYEE 304
                   +    N   L  +A  I+D    GL  +   K  N  K     E S+     
Sbjct: 321 --------EVLTTNPRRLSIIAESIRD----GLATWDNWKHVNCDKLTTIIESSL----N 364

Query: 305 YLSVGGPSN--EHGILLAVFLFLVKHGAP---LSL--ENNNRQKPLDLI--LEDTSLLNE 355
            L    P+   +    L+VF        P   LSL   +  +   + ++  L   SL+ +
Sbjct: 365 VLE---PAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 356 IMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLK 415
             + +   +  +  E        ++ AL   ++   +  +              ++ L+ 
Sbjct: 420 QPKESTISIPSIYLELKV--KLENEYALHRSIVDHYNIPKTFD-----------SDDLIP 466

Query: 416 PCN----------HAVACE--ECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIE 463
           P            H    E  E  +  +   +   F+E ++  D            + ++
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI-LNTLQ 525

Query: 464 RVNYLESKISEIEEMNTCTICMERCRNTI--FLCGHGTCDVCAK 505
           ++ + +  I + +         ER  N I  FL       +C+K
Sbjct: 526 QLKFYKPYICDNDPKY------ERLVNAILDFLPKIEENLICSK 563

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPK-TSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
           L+ AV   +      +  L +N   + K T  G T LH  C  D+ E ++LL+ + K +I
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASI 231

Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLML 263
              +    TPL  A           L  
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 195 LNRNLATVPKTSDGFTPLHVACF---NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG 251
           L   +          T LH+A        + IV+ LV+    N++    K  T L     
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCL 214

Query: 252 QGQTSVINYLMLRDVALDIQDIDGNGLLH 280
                 +  L+    +++I +  G   L 
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLD 243

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 20/105 (19%), Positives = 28/105 (26%), Gaps = 36/105 (34%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           L++N  N++ Q     T +H        E   LLL               +I        
Sbjct: 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-----------KASIE------- 232

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
                                  G TPL +A    H    ELL +
Sbjct: 233 ------------------IANESGETPLDIAKRLKHEHCEELLTQ 259

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 49.1 bits (117), Expect = 5e-08
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 476 EEMNTCTICMERCRNTIFL---CGHG-TCDVCAKTLKF----CHMCRKLIEQRINISRAF 527
             +  C++C +R R+   +    GH  TC  CA+ LK     C +C+K I+  I   + F
Sbjct: 5   NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI---KVF 61

Query: 528 VS 529
           ++
Sbjct: 62  IA 63

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 393 SCQNVPVECAVCSELGV-ANVLLKPCNHAVACEECSSRMKK----CIMCKTFIEMRV 444
            CQN+   C++C +     N++     H V C  C+ R+KK    C +CK  I++ +
Sbjct: 2   DCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 474 EIEEMNTCTICMERCRNTIFL---CGHG-TCDVCAKTLKF----CHMCRKLIEQRINI 523
            +  +  C IC  R +N   +    GH   C  CAK LK     C +CR+ I+  +  
Sbjct: 4   PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLT 61

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 177 LNYAVLRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDH---IEIVELLVE 229
           L  A+   ++    +  A      + L      +     LH+A    +   + +V+ ++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII- 194

Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
           +   +++A      T L  A    Q   +  L+     +   +  G   L
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 179 YAVLRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDH---IEIVELLVEKY 231
            A+   ++    +  A      + L      +     LH+A    +   + +V+ +++  
Sbjct: 157 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-N 215

Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
             +++A      T L  A    Q   +  L+     +   +  G   L 
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 14/121 (11%)

Query: 119 IKQDFVLLRNGCNVNIQDNNQD------TPMHDAVAKG----FEEIQLLLLSHPEVNLYL 168
           +        NG +        D        +H AV          +  ++ +   ++   
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-- 221

Query: 169 ENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
           + + G   L+YA L       +  L L            G T L +A    H E  ELL 
Sbjct: 222 KAADGNTALHYAALYNQPDCLK--LLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279

Query: 229 E 229
           +
Sbjct: 280 Q 280

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
           +    ++      LA   ++  V    D  TPL  A   + +   E L++    N+N  D
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQAD 265

Query: 240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
              R PL  A   G T +    + R   L  +D +G 
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR 302

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 125 LLRNGCNVNIQDNNQD--TPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
            L +G +VN  +  QD  TP+  A A       + LL +   VN    +S G   L++A 
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA--DSAGRGPLHHAT 276

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
           + G+  +    L    +L      S+G  PL +A    + +IV LL         A  
Sbjct: 277 ILGHTGLACLFLKRGADLGARD--SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	644
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.64
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.64
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.31
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.2
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.11
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.11
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.03
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.98
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.89
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.79
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.52
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.5
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.48
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.47
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.41
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.39
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.37
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.35
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.35
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.34
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.33
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.33
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.32
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.29
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.28
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.27
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.27
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.27
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.26
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.26
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.25
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.24
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.22
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.21
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.21
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.19
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.16
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.14
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.13
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.13
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.11
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.1
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.1
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.1
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.08
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.08
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.08
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.03
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.02
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.01
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.0
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.0
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	97.99
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.98
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.94
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	97.92
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	97.88
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	97.87
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	97.85
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.83
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	97.77
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.57
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.57
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.53
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.34
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	97.22
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.11
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	97.06
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	96.93
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.84
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	96.55
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.52
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	96.49
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.48
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	96.45
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	96.44
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	96.15
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	96.12
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	96.1
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	96.07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	96.04
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	96.01
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	95.96
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	95.92
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	95.91
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	95.86
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	95.6
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	95.58
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	95.44
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	95.38
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	95.37
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	95.34
2ect_A	78	Ring finger protein 126; metal binding protein, st	95.34
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	95.31
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	95.28
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	95.27
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	95.22
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	95.19
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	95.18
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	95.12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	95.08
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	95.07
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	95.0
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	94.98
1z6u_A	150	NP95-like ring finger protein isoform B; structura	94.78
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	94.69
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	94.66
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	94.63
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	94.42
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	94.3
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	93.99
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	93.84
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	93.8
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	93.56
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	93.48
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	93.34
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	93.22
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	92.55
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	91.98
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	91.22
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	89.93
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	89.87
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	89.45
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	87.6
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	87.16
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	86.47
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	86.34
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	84.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	84.69
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	84.04
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	83.84
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	82.46
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	80.61

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-45  Score=397.92  Aligned_cols=287  Identities=23%  Similarity=0.245  Sum_probs=233.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +||||+||..|++++|++|+++|++++.+|..|.||||+|+..|+.+++++| ..+++++..+..+.++++.+.......
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~   94 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   94 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            5888888888888888888888888888888888888888888888888888 888888887777777777666443221


Q ss_pred             ---------CCCCCCCCCCCCcccc---------cccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCC
Q psy2733          80 ---------RPSNLPKVEPETPMLN---------MKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNI  134 (644)
Q Consensus        80 ---------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~  134 (644)
                               ...+.......+++..         +..+...+.+....+..|.||||+|+       +++|+++|++++.
T Consensus        95 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  174 (437)
T 1n11_A           95 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  174 (437)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence                     1222222333333332         23444555566667788899999985       8899999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHH
Q psy2733         135 QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHV  214 (644)
Q Consensus       135 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~  214 (644)
                      .+..|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.++++.|++.+++...  .+..|.||||+
T Consensus       175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~  251 (437)
T 1n11_A          175 AGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA--ESVQGVTPLHL  251 (437)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGG-GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHH
Confidence            99999999999999999999999998 6888888888899999999999999999999998887655  45788999999


Q ss_pred             HHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccc
Q psy2733         215 ACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKT  291 (644)
Q Consensus       215 A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~  291 (644)
                      |+..|+.+++++|++. +++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++
T Consensus       252 A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v  327 (437)
T 1n11_A          252 AAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  327 (437)
T ss_dssp             HHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHH
Confidence            9999999999999987 788999999999999999999999999999999999999999999999999998885433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-44  Score=393.11  Aligned_cols=316  Identities=20%  Similarity=0.217  Sum_probs=283.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++| .++++++..+..+.++++.+.......
T Consensus        48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  127 (437)
T 1n11_A           48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE  127 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            5999999999999999999999999999999999999999999999999999 999999998888888888776554322


Q ss_pred             C---------CCCCCCCCCCCccc---------ccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCC
Q psy2733          80 R---------PSNLPKVEPETPML---------NMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNI  134 (644)
Q Consensus        80 ~---------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~  134 (644)
                      .         ..........+++.         .++++...+.+....+..|.|||++|+       +++|+++|++++.
T Consensus       128 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  207 (437)
T 1n11_A          128 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS  207 (437)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC
T ss_pred             HHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            1         11111222223322         245566677777888899999999996       9999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHH
Q psy2733         135 QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHV  214 (644)
Q Consensus       135 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~  214 (644)
                      .+..|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.+++...  .+..|.||||+
T Consensus       208 ~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~  284 (437)
T 1n11_A          208 PAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL--GNKSGLTPLHL  284 (437)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCTTCCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCC--CCCCCCCHHHH
Confidence            99999999999999999999999999 7999999999999999999999999999999999987765  56789999999


Q ss_pred             HHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCccccccc
Q psy2733         215 ACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPIT  294 (644)
Q Consensus       215 A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~  294 (644)
                      |+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..++       
T Consensus       285 A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~-------  356 (437)
T 1n11_A          285 VAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH-------  356 (437)
T ss_dssp             HHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-------
T ss_pred             HHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCCh-------
Confidence            9999999999999998 89999999999999999999999999999999999999999999999999999998       


Q ss_pred             ccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCc
Q psy2733         295 REKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTS  351 (644)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~  351 (644)
                                              .+++++|+++|++++.+|.+|+|||++|.+.+.
T Consensus       357 ------------------------~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          357 ------------------------TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             ------------------------HHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             ------------------------HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence                                    779999999999999999999999999996653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.4e-41  Score=357.54  Aligned_cols=271  Identities=21%  Similarity=0.246  Sum_probs=233.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCC-CCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDA-GDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~-G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      ||||.||+.|++++|++||++|+++|.+|.. |+||||+|+..|+.++|++| .+|++++.                   
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~-------------------   87 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-------------------   87 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------------------
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh-------------------
Confidence            7999999999999999999999999998764 99999999999999999999 99999887                   


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFE  152 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~  152 (644)
                                                   .+..+.++++.+.       +..++..+++++..|..|.||||+|+..|+.
T Consensus        88 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           88 -----------------------------RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             -----------------------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             -----------------------------hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence                                         6677777777774       7788899999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccc----------CCCCCcHHHHHHHcCCHHHHHHHHHh-cCCccCCcCCCCCchHHHHHHhcCc-
Q psy2733         153 EIQLLLLSHPEVNLYLE----------NSKGFNILNYAVLRGNMKVTEKILAL-NRNLATVPKTSDGFTPLHVACFNDH-  220 (644)
Q Consensus       153 ~iv~~Ll~~~~~~~~~~----------d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~d~~g~T~Lh~A~~~g~-  220 (644)
                      +++++|++ .|++++..          +..|.||||+|+..|+.+++++|++. ++++..  .+..|.|+||.++..+. 
T Consensus       139 ~~~~~ll~-~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~--~d~~g~t~l~~~~~~~~~  215 (337)
T 4g8k_A          139 KALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSDD  215 (337)
T ss_dssp             HHHHHHHH-TTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC--CCTTSCCHHHHHHHHSCT
T ss_pred             HHHHHHHH-cCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc--cCCCCCcHHHHHHHHcCc
Confidence            99999998 67777654          45688999999999999999999964 666654  56789999998776443 


Q ss_pred             ---HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCcHHHHHHHcCCccccccccc
Q psy2733         221 ---IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR-DVALDIQDIDGNGLLHFLFIKKNFYKTPITRE  296 (644)
Q Consensus       221 ---~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~-gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~  296 (644)
                         ..++++|++. |+++|.+|..|+||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+..|+         
T Consensus       216 ~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~---------  285 (337)
T 4g8k_A          216 SDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL---------  285 (337)
T ss_dssp             TTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC---------
T ss_pred             ccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC---------
Confidence               4678888887 899999999999999999999999999999975 89999999999999999999988         


Q ss_pred             CCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCC--cHHHHHHHHh
Q psy2733         297 KSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDT--SLLNEIMEHA  360 (644)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~--~~~~~l~~~~  360 (644)
                                            .+++++|+++||++|.+     +||++|++.+  ++++.|++.+
T Consensus       286 ----------------------~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~G  324 (337)
T 4g8k_A          286 ----------------------KKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHG  324 (337)
T ss_dssp             ----------------------HHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ----------------------HHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCc
Confidence                                  77999999999998754     5999999654  3455555544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-41  Score=342.90  Aligned_cols=254  Identities=22%  Similarity=0.246  Sum_probs=238.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCccc-CCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYP-DDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKV   78 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~-d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~   78 (644)
                      +||||+|++.|++++|++|++.|++++.+ +..|+||||+|+..|+.+++++| ..+++++.                  
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------   67 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL------------------   67 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc------------------
Confidence            48999999999999999999999999988 88899999999999999999999 88888876                  


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2733          79 QRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGF  151 (644)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~  151 (644)
                                                    .+..|.||||+|+       +++|+++|++++..|..|.||||+|+..|+
T Consensus        68 ------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  117 (285)
T 1wdy_A           68 ------------------------------RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  117 (285)
T ss_dssp             ------------------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             ------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC
Confidence                                          7778999999996       999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccc----------CCCCCcHHHHHHHcCCHHHHHHHHHh-cCCccCCcCCCCCchHHHHHHhcCc
Q psy2733         152 EEIQLLLLSHPEVNLYLE----------NSKGFNILNYAVLRGNMKVTEKILAL-NRNLATVPKTSDGFTPLHVACFNDH  220 (644)
Q Consensus       152 ~~iv~~Ll~~~~~~~~~~----------d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~d~~g~T~Lh~A~~~g~  220 (644)
                      .+++++|++ .+++++..          +..|.||||+|+..|+.+++++|++. +.++..  .+..|.||||+|+..++
T Consensus       118 ~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~l~~a~~~~~  194 (285)
T 1wdy_A          118 VKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSD  194 (285)
T ss_dssp             HHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHHHHCSC
T ss_pred             HHHHHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc--cCCCCCCHHHHHHHccc
Confidence            999999999 78888877          78899999999999999999999997 766554  56889999999999999


Q ss_pred             ----HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCcHHHHHHHcCCcccccccc
Q psy2733         221 ----IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML-RDVALDIQDIDGNGLLHFLFIKKNFYKTPITR  295 (644)
Q Consensus       221 ----~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~-~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~  295 (644)
                          .+++++|++. |++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++        
T Consensus       195 ~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~--------  265 (285)
T 1wdy_A          195 DSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL--------  265 (285)
T ss_dssp             TTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC--------
T ss_pred             cchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc--------
Confidence                9999999998 89999999999999999999999999999999 899999999999999999999998        


Q ss_pred             cCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCC
Q psy2733         296 EKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENN  337 (644)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~  337 (644)
                                             .+++++|+++||+++.+|.
T Consensus       266 -----------------------~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          266 -----------------------KKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             -----------------------HHHHHHHHHHSSCSCCSSC
T ss_pred             -----------------------HHHHHHHHHcCCCCCcccc
Confidence                                   7799999999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.1e-40  Score=345.76  Aligned_cols=273  Identities=25%  Similarity=0.225  Sum_probs=245.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKV   78 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~-Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~   78 (644)
                      +|+||.||+.|+.+.|+.|+.. |++++.+|..|+||||+|+..|+.++|++| ..+++++.                  
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------   86 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA------------------   86 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------------------
Confidence            3799999999999999999876 899999999999999999999999999999 88888877                  


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2733          79 QRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGF  151 (644)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~  151 (644)
                                                    .+..|.||||+|+       +++|+++|++++..|..|.||||+|+..|+
T Consensus        87 ------------------------------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  136 (351)
T 3utm_A           87 ------------------------------KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR  136 (351)
T ss_dssp             ------------------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ------------------------------cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence                                          7788999999996       999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCCCCcHHHHH---------------------HHcCCHHHHHHHHHhcCCccCCcCCCCCch
Q psy2733         152 EEIQLLLLSHPEVNLYLENSKGFNILNYA---------------------VLRGNMKVTEKILALNRNLATVPKTSDGFT  210 (644)
Q Consensus       152 ~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A---------------------~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T  210 (644)
                      .+++++|++ .|++++..+..|.+|+++|                     +..++.+.++.++.......  ..+..|.|
T Consensus       137 ~~~v~~Ll~-~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~t  213 (351)
T 3utm_A          137 VEVCSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF--KQPQSHET  213 (351)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC--CCTTTCCC
T ss_pred             HHHHHHHHH-cCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc--cCCCCCCC
Confidence            999999999 7999999999999998765                     45566666666666554322  24578999


Q ss_pred             HHHHHHhc---CcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         211 PLHVACFN---DHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       211 ~Lh~A~~~---g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      |||+|+..   +..+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++
T Consensus       214 ~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~  292 (351)
T 3utm_A          214 ALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH  292 (351)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            99999999   668999999998 89999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHHHHHH
Q psy2733         288 FYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIME  358 (644)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~  358 (644)
                                                     .+++++|+++|++++.+|..|+||+++|.  ..+.+.+.+
T Consensus       293 -------------------------------~~~v~~Ll~~gad~~~~~~~g~tal~~a~--~~~~~~l~~  330 (351)
T 3utm_A          293 -------------------------------LQTCRLLLSYGSDPSIISLQGFTAAQMGN--EAVQQILSE  330 (351)
T ss_dssp             -------------------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHSC--HHHHHHHHH
T ss_pred             -------------------------------HHHHHHHHHcCCCCCCcCCCCCChhhhhh--HHHHHHHHh
Confidence                                           78999999999999999999999999995  334444443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=339.82  Aligned_cols=249  Identities=19%  Similarity=0.228  Sum_probs=211.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCC-----------CCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhh
Q psy2733           1 KTLLHILAYQGCVEELNILLARG-----------ACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKER   69 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~G-----------a~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~   69 (644)
                      +|+||+||..|+.+.+..++..+           ..++.+|..|+||||+|+..|+.+++++                  
T Consensus        16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~------------------   77 (285)
T 3d9h_A           16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRN------------------   77 (285)
T ss_dssp             --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHH------------------
T ss_pred             HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHH------------------
Confidence            58999999999988777766543           2356789999999999999999999987                  


Q ss_pred             hhccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q psy2733          70 HRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAK  149 (644)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~  149 (644)
                                                                             |++.|+++|..|.+|+||||+|+..
T Consensus        78 -------------------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~  102 (285)
T 3d9h_A           78 -------------------------------------------------------LISQGWAVNIITADHVSPLHEACLG  102 (285)
T ss_dssp             -------------------------------------------------------HHHTTCCSCEECTTCCCHHHHHHHT
T ss_pred             -------------------------------------------------------HHHCCCCCCCcCCCCCCHHHHHHHC
Confidence                                                                   7788888999999999999999999


Q ss_pred             CCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHH
Q psy2733         150 GFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE  229 (644)
Q Consensus       150 g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  229 (644)
                      |+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.++++..   +..|.||||+|+..|+.+++++|++
T Consensus       103 g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~  178 (285)
T 3d9h_A          103 GHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECVNSLIA  178 (285)
T ss_dssp             TCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC---SCTTSCHHHHHHHHTCHHHHHHHHH
T ss_pred             CcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999 7999999999999999999999999999999999987654   2569999999999999999999999


Q ss_pred             hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcC
Q psy2733         230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVG  309 (644)
Q Consensus       230 ~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (644)
                      . |++++.+|..|.||||+|+..|+.+++++|++.|++++. |..|+||||+|+..++                      
T Consensus       179 ~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~----------------------  234 (285)
T 3d9h_A          179 Y-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTAS----------------------  234 (285)
T ss_dssp             T-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTC----------------------
T ss_pred             C-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCC----------------------
Confidence            8 899999999999999999999999999999999999995 8999999999999998                      


Q ss_pred             CCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHHHHHHH
Q psy2733         310 GPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEH  359 (644)
Q Consensus       310 ~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~~  359 (644)
                               .+++++|+++|++++.+|.+|+|||++|+++.++++.|++.
T Consensus       235 ---------~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~Ll~~  275 (285)
T 3d9h_A          235 ---------EELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLER  275 (285)
T ss_dssp             ---------HHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTSHHHHHHHHH
T ss_pred             ---------HHHHHHHHHCCCCCCCcCCCCCCHHHHhcCccHHHHHHHHh
Confidence                     77999999999999999999999999999778777777765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.1e-38  Score=333.29  Aligned_cols=250  Identities=23%  Similarity=0.268  Sum_probs=226.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +||||+||..|+.++|++||++|++++.+|..+.+|+++++..+...++..+ ..+++++.                   
T Consensus        60 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  120 (337)
T 4g8k_A           60 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE-------------------  120 (337)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-------------------
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhh-------------------
Confidence            6999999999999999999999999999999999999999999999999998 88877776                   


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCC----------CCCCCcH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQ----------DNNQDTP  142 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~----------d~~G~Tp  142 (644)
                                                   .+..|.||+++|+       +++|+++|++++..          +..|.||
T Consensus       121 -----------------------------~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~  171 (337)
T 4g8k_A          121 -----------------------------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  171 (337)
T ss_dssp             -----------------------------BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred             -----------------------------hccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence                                         7788999999996       89999999998754          3468999


Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHHhcCCccCCcCCCCCchHHHHHHhc
Q psy2733         143 MHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN----MKVTEKILALNRNLATVPKTSDGFTPLHVACFN  218 (644)
Q Consensus       143 L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~  218 (644)
                      ||+|+..|+.+++++|+++.|++++..+..|.|+|++++..+.    ..++++|++.|++++.  .|..|+||||+|+..
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~--~d~~g~t~L~~a~~~  249 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--RGERGKTPLILAVEK  249 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC--CCGGGCCHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHh
Confidence            9999999999999999976799999999999999999887654    4688999999998766  568899999999999


Q ss_pred             CcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCC
Q psy2733         219 DHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKS  298 (644)
Q Consensus       219 g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~  298 (644)
                      |+.+++++|+...|++++.+|..|+||||+|+..|+.++|++|+++|+++|.+     +|||+|+..++           
T Consensus       250 ~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~-----------  313 (337)
T 4g8k_A          250 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYD-----------  313 (337)
T ss_dssp             TCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTC-----------
T ss_pred             hhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCC-----------
Confidence            99999999999878999999999999999999999999999999999999754     59999999998           


Q ss_pred             chhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCC
Q psy2733         299 VPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLEN  336 (644)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n  336 (644)
                                          .+++++|+++||++|...
T Consensus       314 --------------------~~iv~~Ll~~GA~~d~~~  331 (337)
T 4g8k_A          314 --------------------HSLVKVLLSHGAKEDFHP  331 (337)
T ss_dssp             --------------------HHHHHHHHHTTCCC----
T ss_pred             --------------------HHHHHHHHHCcCCCCCCC
Confidence                                779999999999998753

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.1e-39  Score=344.64  Aligned_cols=241  Identities=17%  Similarity=0.146  Sum_probs=219.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+||..|++++|++|++.|++++.+|..|+||||+|+..|+.++|++                             
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~-----------------------------   71 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY-----------------------------   71 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH-----------------------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH-----------------------------
Confidence            489999999999999999999999999999999999999999999999998                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++.  .+|.||||+|+..|+.+++++|++
T Consensus        72 --------------------------------------------Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~  105 (364)
T 3ljn_A           72 --------------------------------------------LASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVE  105 (364)
T ss_dssp             --------------------------------------------HHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                        5556664433  479999999999999999999999


Q ss_pred             CC----CCCccc-----------------cCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHh
Q psy2733         161 HP----EVNLYL-----------------ENSKGFNILNYAVLRG--NMKVTEKILALNRNLATVPKTSDGFTPLHVACF  217 (644)
Q Consensus       161 ~~----~~~~~~-----------------~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~  217 (644)
                       .    +.+++.                 .+..|.||||+|+..|  +.+++++|++.++++..  .|..|+||||+|+.
T Consensus       106 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~--~d~~g~t~L~~A~~  182 (364)
T 3ljn_A          106 -GAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA--KDKADETPLMRAME  182 (364)
T ss_dssp             -HHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHH
T ss_pred             -hccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHH
Confidence             5    667666                 8889999999999999  99999999999988765  56889999999999


Q ss_pred             cCcHHHHHHHHHhcCCC-----cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCccccc
Q psy2733         218 NDHIEIVELLVEKYKVN-----INALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTP  292 (644)
Q Consensus       218 ~g~~~~v~~Ll~~~g~~-----in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~  292 (644)
                      .|+.+++++|++. |++     ++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++     
T Consensus       183 ~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~-----  256 (364)
T 3ljn_A          183 FRNREALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM-----  256 (364)
T ss_dssp             TTCHHHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC-----
T ss_pred             cCCHHHHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh-----
Confidence            9999999999998 677     99999999999999999999999999999999999999999999999999998     


Q ss_pred             ccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCC------------CCCCCCCcchhhhcCCc
Q psy2733         293 ITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSL------------ENNNRQKPLDLILEDTS  351 (644)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~------------~n~~G~TpL~~A~~~~~  351 (644)
                                                .+++++|+++|++++.            .+..|+||+++|+..+.
T Consensus       257 --------------------------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~  301 (364)
T 3ljn_A          257 --------------------------VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS  301 (364)
T ss_dssp             --------------------------HHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred             --------------------------HHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccC
Confidence                                      7799999999877533            56788999999995543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.8e-38  Score=323.90  Aligned_cols=240  Identities=24%  Similarity=0.268  Sum_probs=185.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC---CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGAC---VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEK   77 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~---~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~   77 (644)
                      +||||+||..|+.++|++|++.|++   ++.+|..|+||||+|+..|+.+++++                          
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~--------------------------   63 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK--------------------------   63 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHH--------------------------
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHH--------------------------
Confidence            6999999999999999999999998   88999999999999999999999987                          


Q ss_pred             ccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy2733          78 VQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL  157 (644)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~  157 (644)
                                                                     |+++|++++..|..|+||||+|+..|+.+++++
T Consensus        64 -----------------------------------------------Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~   96 (282)
T 1oy3_D           64 -----------------------------------------------LYAAGAGVLVAERGGHTALHLACRVRAHTCACV   96 (282)
T ss_dssp             -----------------------------------------------HHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHH
T ss_pred             -----------------------------------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHh
Confidence                                                           788899999999999999999999999999999


Q ss_pred             HhcCCCCCccc-------------cCCCCCcHHHHHHHcCCHHHHH-HHHHhcCCccCCcCCCCCchHHHHHHhcCcHHH
Q psy2733         158 LLSHPEVNLYL-------------ENSKGFNILNYAVLRGNMKVTE-KILALNRNLATVPKTSDGFTPLHVACFNDHIEI  223 (644)
Q Consensus       158 Ll~~~~~~~~~-------------~d~~g~tpL~~A~~~g~~~~v~-~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~  223 (644)
                      |++ .+.....             ....+.++++.+...+....+. .+...+..+  ...+..|+||||+|+..|+.++
T Consensus        97 Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~  173 (282)
T 1oy3_D           97 LLQ-PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL--EAENYDGHTPLHVAVIHKDAEM  173 (282)
T ss_dssp             HSS-SCCSSCCCC-----------------------------------CCCGGGGT--TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hhc-cCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC--CCcCCCCcCHHHHHHHcCCHHH
Confidence            999 4544321             2234566777666655433332 222223222  2356889999999999999999


Q ss_pred             HHHHHHhcCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhH
Q psy2733         224 VELLVEKYKVNINALDLK-KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIY  302 (644)
Q Consensus       224 v~~Ll~~~g~~in~~d~~-G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~  302 (644)
                      +++|++. |++++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++               
T Consensus       174 v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~---------------  237 (282)
T 1oy3_D          174 VRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN---------------  237 (282)
T ss_dssp             HHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC---------------
T ss_pred             HHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC---------------
Confidence            9999998 8999999865 9999999999999999999999999999999999999999999998               


Q ss_pred             HhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhc
Q psy2733         303 EEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILE  348 (644)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~  348 (644)
                                      .+++++|+++||+++.+|..|+|||++|..
T Consensus       238 ----------------~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          238 ----------------PILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             ----------------HHHHHHHHHTTCCCCCCC------------
T ss_pred             ----------------cHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence                            779999999999999999999999999983

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.4e-39  Score=343.79  Aligned_cols=193  Identities=20%  Similarity=0.293  Sum_probs=178.6

Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhc---CCc
Q psy2733         123 FVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN---RNL  199 (644)
Q Consensus       123 ~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~---~~~  199 (644)
                      +.|++.|+++|..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.+   .++
T Consensus       150 ~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  228 (373)
T 2fo1_E          150 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI  228 (373)
T ss_dssp             HHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred             HHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh
Confidence            45679999999999999999999999999999999999 79999999999999999999999999999999877   444


Q ss_pred             cCCcCCCCCchHHHHHHhcC---cHHHHHHHHHhcCCCccc--------CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC
Q psy2733         200 ATVPKTSDGFTPLHVACFND---HIEIVELLVEKYKVNINA--------LDLKKRTPLMAAVGQGQTSVINYLMLRD-VA  267 (644)
Q Consensus       200 ~~~~~d~~g~T~Lh~A~~~g---~~~~v~~Ll~~~g~~in~--------~d~~G~TpL~~Aa~~g~~~iv~~Ll~~g-ad  267 (644)
                      ..  .+..|.||||+|+..+   +.+++++|++. |++++.        .|..|.||||+|+..|+.+++++|+++| ++
T Consensus       229 ~~--~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  305 (373)
T 2fo1_E          229 EE--LDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN  305 (373)
T ss_dssp             SC--CCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred             hh--cCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC
Confidence            33  5688999999999998   89999999998 788886        6779999999999999999999999875 99


Q ss_pred             CCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhh
Q psy2733         268 LDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       268 vn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~  347 (644)
                      ++.+|..|+||||+|+..++                               .+++++|+++|++++.+|..|+|||++|+
T Consensus       306 ~n~~d~~g~TpL~~A~~~g~-------------------------------~~iv~~Ll~~gad~~~~d~~g~t~l~~A~  354 (373)
T 2fo1_E          306 KDKQDEDGKTPIMLAAQEGR-------------------------------IEVVMYLIQQGASVEAVDATDHTARQLAQ  354 (373)
T ss_dssp             TTCCCTTCCCHHHHHHHHTC-------------------------------HHHHHHHHHTTCCSSCCCSSSCCHHHHHH
T ss_pred             ccCcCCCCCCHHHHHHHcCC-------------------------------HHHHHHHHHcCCCccCCCCCCCCHHHHHH
Confidence            99999999999999999998                               78999999999999999999999999999


Q ss_pred             cCC
Q psy2733         348 EDT  350 (644)
Q Consensus       348 ~~~  350 (644)
                      ..+
T Consensus       355 ~~g  357 (373)
T 2fo1_E          355 ANN  357 (373)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.7e-37  Score=305.68  Aligned_cols=223  Identities=20%  Similarity=0.305  Sum_probs=208.0

Q ss_pred             CCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccc
Q psy2733          24 ACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMN  103 (644)
Q Consensus        24 a~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (644)
                      .+++.+|..|+||||+|+..|+.+++++                                                    
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~----------------------------------------------------   29 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHM----------------------------------------------------   29 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHH----------------------------------------------------
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHH----------------------------------------------------
Confidence            4678899999999999999999999987                                                    


Q ss_pred             cCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHc
Q psy2733         104 EDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR  183 (644)
Q Consensus       104 ~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  183 (644)
                                           |+++|++++..+..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..
T Consensus        30 ---------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~   87 (237)
T 3b7b_A           30 ---------------------LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKK   87 (237)
T ss_dssp             ---------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCHHHHHHHT
T ss_pred             ---------------------HHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHc
Confidence                                 778888888899999999999999999999999999 7999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2733         184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML  263 (644)
Q Consensus       184 g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~  263 (644)
                      |+.+++++|++.+...... .+..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++
T Consensus        88 ~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  165 (237)
T 3b7b_A           88 GHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLA  165 (237)
T ss_dssp             TCHHHHHHHHTTTCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred             CCHHHHHHHHhCCCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999988433222 457899999999999999999999998 89999999999999999999999999999999


Q ss_pred             CCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcc
Q psy2733         264 RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPL  343 (644)
Q Consensus       264 ~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL  343 (644)
                      +|++++.+|..|.||||+|+..++                               .+++++|+++|++++.+|.+|+|||
T Consensus       166 ~g~~~~~~~~~g~t~L~~A~~~~~-------------------------------~~~v~~Ll~~gad~~~~d~~g~t~l  214 (237)
T 3b7b_A          166 AKCDLHAVNIHGDSPLHIAARENR-------------------------------YDCVVLFLSRDSDVTLKNKEGETPL  214 (237)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTC-------------------------------HHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhCC-------------------------------HhHHHHHHHcCCCCCccCCCCCCHH
Confidence            999999999999999999999998                               7799999999999999999999999


Q ss_pred             hhhhcCCcHH
Q psy2733         344 DLILEDTSLL  353 (644)
Q Consensus       344 ~~A~~~~~~~  353 (644)
                      ++|+..++..
T Consensus       215 ~~A~~~~~~~  224 (237)
T 3b7b_A          215 QCASLNSQVW  224 (237)
T ss_dssp             HHSCTTCHHH
T ss_pred             HHHHHHHHHH
Confidence            9999766553

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7e-37  Score=311.77  Aligned_cols=249  Identities=19%  Similarity=0.217  Sum_probs=227.9

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccCCCCC
Q psy2733          31 DAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDT  109 (644)
Q Consensus        31 ~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (644)
                      .+|.||||+|+..|+.+++++| ..+++++.                                                .
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------------------------------------~   34 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNF------------------------------------------------Q   34 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTC------------------------------------------------C
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCccc------------------------------------------------c
Confidence            3578999999999999999999 88887765                                                3


Q ss_pred             -CcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHH
Q psy2733         110 -PSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV  181 (644)
Q Consensus       110 -~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~  181 (644)
                       +..|.||||+|+       +++|+++|++++..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+
T Consensus        35 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~  113 (285)
T 1wdy_A           35 EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAA  113 (285)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTCCBHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCcccCCHHHHHH
Confidence             567889999996       999999999999999999999999999999999999999 79999999999999999999


Q ss_pred             HcCCHHHHHHHHHhcCCccCCcC--------CCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC
Q psy2733         182 LRGNMKVTEKILALNRNLATVPK--------TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQG  253 (644)
Q Consensus       182 ~~g~~~~v~~Ll~~~~~~~~~~~--------d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g  253 (644)
                      ..|+.+++++|++.++++.....        +..|.||||+|+..|+.+++++|++..|++++..|..|.||||+|+..+
T Consensus       114 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  193 (285)
T 1wdy_A          114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS  193 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred             HhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcc
Confidence            99999999999999988765321        5779999999999999999999999878999999999999999999999


Q ss_pred             C----HHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHH-c
Q psy2733         254 Q----TSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK-H  328 (644)
Q Consensus       254 ~----~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~-~  328 (644)
                      +    .+++++|+++|++++.+|..|+||||+|+..++                               .+++++|++ .
T Consensus       194 ~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-------------------------------~~~v~~Ll~~~  242 (285)
T 1wdy_A          194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-------------------------------LGLVQRLLEQE  242 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC-------------------------------HHHHHHHHHSS
T ss_pred             ccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC-------------------------------HHHHHHHHhcc
Confidence            9    999999999999999999999999999999998                               779999999 8


Q ss_pred             CCCCCCCCCCCCCcchhhhcCC--cHHHHHHHH
Q psy2733         329 GAPLSLENNNRQKPLDLILEDT--SLLNEIMEH  359 (644)
Q Consensus       329 Gadi~~~n~~G~TpL~~A~~~~--~~~~~l~~~  359 (644)
                      |++++.+|..|+||||+|++.+  ++++.|++.
T Consensus       243 g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  275 (285)
T 1wdy_A          243 HIEINDTDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence            9999999999999999999654  344444443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.4e-37  Score=313.62  Aligned_cols=211  Identities=23%  Similarity=0.262  Sum_probs=173.8

Q ss_pred             CcHHHHHHHcC-------------CHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhh
Q psy2733           1 KTLLHILAYQG-------------CVEELNILLARGACVYY-PDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIY   66 (644)
Q Consensus         1 ~TpLh~Aa~~G-------------~~e~vk~LL~~Ga~~n~-~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~   66 (644)
                      +||||+|+..|             +.+++++|++.|++++. .|..|+||||+|+..|+.+++++               
T Consensus        11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~---------------   75 (253)
T 1yyh_A           11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR---------------   75 (253)
T ss_dssp             -----------------------------------------CCCTTSCCHHHHHHHTTCHHHHHH---------------
T ss_pred             CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHH---------------
Confidence            69999999988             99999999999999865 58999999999999999999987               


Q ss_pred             hhhhhccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q psy2733          67 KERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDA  146 (644)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A  146 (644)
                                                                                |+++|++++..|..|+||||+|
T Consensus        76 ----------------------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A   97 (253)
T 1yyh_A           76 ----------------------------------------------------------LLEASADANIQDNMGRTPLHAA   97 (253)
T ss_dssp             ----------------------------------------------------------HHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ----------------------------------------------------------HHHcCCCCCCCCCCCCCHHHHH
Confidence                                                                      7888889999999999999999


Q ss_pred             HHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHH
Q psy2733         147 VAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVEL  226 (644)
Q Consensus       147 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~  226 (644)
                      +..|+.+++++|++....+++..+..|.||||+|+..|+.+++++|++.++++..  .|..|+||||+|+..|+.+++++
T Consensus        98 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~  175 (253)
T 1yyh_A           98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--VDDLGKSALHWAAAVNNVDAAVV  175 (253)
T ss_dssp             HHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC--BCTTSCBHHHHHHHHTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999954448999999999999999999999999999999988765  56789999999999999999999


Q ss_pred             HHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         227 LVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       227 Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      |++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++
T Consensus       176 Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          176 LLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             HHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCC
Confidence            9998 89999999999999999999999999999999999999999999999999999999

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=318.67  Aligned_cols=222  Identities=23%  Similarity=0.299  Sum_probs=202.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+||..|+.++|++|++.|++++.+|..|+||||+|+..|+.+++++                             
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~-----------------------------  110 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKI-----------------------------  110 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHH-----------------------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHH-----------------------------
Confidence            699999999999999999999999999999999999999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus       111 --------------------------------------------Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  146 (285)
T 3d9h_A          111 --------------------------------------------LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ  146 (285)
T ss_dssp             --------------------------------------------HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHH
Confidence                                                        778888999999999999999999999999999999


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCC
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL  240 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~  240 (644)
                       .+++++..+ .|.||||+|+..|+.+++++|++.++++..  .|..|+||||+|+..|+.+++++|++. |++++. |.
T Consensus       147 -~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~-~~  220 (285)
T 3d9h_A          147 -HGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDH--KISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GK  220 (285)
T ss_dssp             -TTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTC--CBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTC-CB
T ss_pred             -CCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCCC-CC
Confidence             788887544 599999999999999999999999988765  568899999999999999999999998 899995 89


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHH
Q psy2733         241 KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLA  320 (644)
Q Consensus       241 ~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (644)
                      .|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+.                                 +
T Consensus       221 ~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~---------------------------------~  267 (285)
T 3d9h_A          221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES---------------------------------P  267 (285)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTS---------------------------------H
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCcc---------------------------------H
Confidence            9999999999999999999999999999999999999999998432                                 4


Q ss_pred             HHHHHHHc-CCCCCC
Q psy2733         321 VFLFLVKH-GAPLSL  334 (644)
Q Consensus       321 iv~~Ll~~-Gadi~~  334 (644)
                      ++++|+++ |+++..
T Consensus       268 ~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          268 LAQLFLEREGASLPK  282 (285)
T ss_dssp             HHHHHHHHC------
T ss_pred             HHHHHHHhhccCCCC
Confidence            89999998 787653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.8e-37  Score=304.08  Aligned_cols=211  Identities=22%  Similarity=0.355  Sum_probs=201.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++                             
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~-----------------------------   62 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY-----------------------------   62 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH-----------------------------
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHH-----------------------------
Confidence            599999999999999999999999999999999999999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus        63 --------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   98 (237)
T 3b7b_A           63 --------------------------------------------LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS   98 (237)
T ss_dssp             --------------------------------------------HHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             --------------------------------------------HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence                                                        778888888899999999999999999999999999


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCC
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL  240 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~  240 (644)
                      ..+.+++..+..|.||||+|+..|+.+++++|++.++++..  .+..|.||||+|+..|+.+++++|++. |++++.+|.
T Consensus        99 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~  175 (237)
T 3b7b_A           99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI--RDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNI  175 (237)
T ss_dssp             TTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHCCHHHHHHHHTT-TCCTTCCCT
T ss_pred             CCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc--cCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCC
Confidence            54489999999999999999999999999999999988765  567899999999999999999999998 899999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         241 KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       241 ~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++
T Consensus       176 ~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             CCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998887

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.5e-37  Score=309.56  Aligned_cols=211  Identities=22%  Similarity=0.283  Sum_probs=198.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHH----CCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLA----RGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTE   76 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~----~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~   76 (644)
                      +||||+||..|+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++                         
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------------------   64 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL-------------------------   64 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH-------------------------
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHH-------------------------
Confidence            699999999999999999997    799999999999999999999999999987                         


Q ss_pred             cccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy2733          77 KVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL  156 (644)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~  156 (644)
                                                                      |++.|++++..|..|.||||+|+..|+.++++
T Consensus        65 ------------------------------------------------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~   96 (241)
T 1k1a_A           65 ------------------------------------------------LVTAGASPMALDRHGQTAAHLACEHRSPTCLR   96 (241)
T ss_dssp             ------------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ------------------------------------------------HHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence                                                            77888888889999999999999999999999


Q ss_pred             HHhcCCCC----CccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcC
Q psy2733         157 LLLSHPEV----NLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK  232 (644)
Q Consensus       157 ~Ll~~~~~----~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g  232 (644)
                      +|++ .+.    +++..+..|.||||+|+..|+.+++++|++.++++..... ..|.||||+|+..|+.+++++|++. |
T Consensus        97 ~Ll~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~-g  173 (241)
T 1k1a_A           97 ALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI-KSGRSPLIHAVENNSLSMVQLLLQH-G  173 (241)
T ss_dssp             HHHH-HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             HHHH-cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCCcHHHHHHHcCCHHHHHHHHHc-C
Confidence            9999 555    7888999999999999999999999999999988766322 6799999999999999999999998 8


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       233 ~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      ++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus       174 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          174 ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999998877

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.4e-37  Score=313.58  Aligned_cols=195  Identities=18%  Similarity=0.172  Sum_probs=171.8

Q ss_pred             HHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCcc
Q psy2733         122 DFVLLRNGCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA  200 (644)
Q Consensus       122 v~~Ll~~gad~n~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  200 (644)
                      ++.|++.|++++. .|..|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.++...
T Consensus        39 v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  117 (253)
T 1yyh_A           39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL  117 (253)
T ss_dssp             -------------CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT
T ss_pred             HHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            4568888888865 48899999999999999999999999 799999999999999999999999999999999987333


Q ss_pred             CCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHH
Q psy2733         201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH  280 (644)
Q Consensus       201 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh  280 (644)
                      .. .+..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus       118 ~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~  195 (253)
T 1yyh_A          118 DA-RMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF  195 (253)
T ss_dssp             TC-CCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cc-cCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            22 458899999999999999999999998 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCC
Q psy2733         281 FLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDT  350 (644)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~  350 (644)
                      +|+..++                               .+++++|+++|++++.+|..|+|||++|++.+
T Consensus       196 ~A~~~~~-------------------------------~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          196 LAAREGS-------------------------------YETAKVLLDHFANRDITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             HHHHHTC-------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHCCC-------------------------------HHHHHHHHHcCCCccccccCCCCHHHHHHHcC
Confidence            9999998                               77999999999999999999999999999554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1e-36  Score=303.65  Aligned_cols=229  Identities=25%  Similarity=0.334  Sum_probs=204.9

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccCC
Q psy2733          27 YYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDM  106 (644)
Q Consensus        27 n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (644)
                      +.+|.+|+||||+|+..|+.+++++|                                                      
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~L------------------------------------------------------   28 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRL------------------------------------------------------   28 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHH------------------------------------------------------
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHH------------------------------------------------------
Confidence            56899999999999999999999884                                                      


Q ss_pred             CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCH
Q psy2733         107 LDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNM  186 (644)
Q Consensus       107 ~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~  186 (644)
                                     ++.+.+.|++++..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.
T Consensus        29 ---------------l~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~   92 (241)
T 1k1a_A           29 ---------------VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSP   92 (241)
T ss_dssp             ---------------HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ---------------HHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCH
Confidence                           123556889999999999999999999999999999999 7999999999999999999999999


Q ss_pred             HHHHHHHHhcCC--ccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHH
Q psy2733         187 KVTEKILALNRN--LATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKRTPLMAAVGQGQTSVINYLML  263 (644)
Q Consensus       187 ~~v~~Ll~~~~~--~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d-~~G~TpL~~Aa~~g~~~iv~~Ll~  263 (644)
                      ++++.|++.++.  ......+..|.||||+|+..|+.+++++|++. |++++..+ ..|.||||+|+..|+.+++++|++
T Consensus        93 ~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  171 (241)
T 1k1a_A           93 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ  171 (241)
T ss_dssp             HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            999999999873  12233567899999999999999999999998 89999999 889999999999999999999999


Q ss_pred             CCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcc
Q psy2733         264 RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPL  343 (644)
Q Consensus       264 ~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL  343 (644)
                      +|++++.+|..|+||||+|+..++                               .+++++|+++|++++.+|..|+|||
T Consensus       172 ~g~~~~~~~~~g~t~L~~A~~~~~-------------------------------~~~v~~Ll~~ga~~~~~~~~g~tpl  220 (241)
T 1k1a_A          172 HGANVNAQMYSGSSALHSASGRGL-------------------------------LPLVRTLVRSGADSSLKNCHNDTPL  220 (241)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHHTC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCC-------------------------------HHHHHHHHhcCCCCCCcCCCCCCHH
Confidence            999999999999999999999998                               7799999999999999999999999


Q ss_pred             hhhhcCCcHHHHHHH
Q psy2733         344 DLILEDTSLLNEIME  358 (644)
Q Consensus       344 ~~A~~~~~~~~~l~~  358 (644)
                      ++|+ ..+..+++..
T Consensus       221 ~~A~-~~~~~~i~~~  234 (241)
T 1k1a_A          221 MVAR-SRRVIDILRG  234 (241)
T ss_dssp             TTCS-SHHHHHHHTC
T ss_pred             HHHH-hcCcHHHHhh
Confidence            9999 4444444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.2e-37  Score=304.79  Aligned_cols=224  Identities=23%  Similarity=0.299  Sum_probs=210.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~-~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      .||||+||..|+++.+++|++.+.. ++.+|..|+||||+|+..|+.+++++                            
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~----------------------------   58 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF----------------------------   58 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHH----------------------------
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHH----------------------------
Confidence            4899999999999999999988654 67889999999999999999999987                            


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                   |++.|++++..|..|+||||+|+..|+.+++++|+
T Consensus        59 ---------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   93 (231)
T 3aji_A           59 ---------------------------------------------LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL   93 (231)
T ss_dssp             ---------------------------------------------HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ---------------------------------------------HHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHH
Confidence                                                         77888888999999999999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD  239 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d  239 (644)
                      + .+++++..+..|.||||+|+..|+.+++++|++.+.++..  .+..|.||||+|+..|+.+++++|++. |++++.+|
T Consensus        94 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~  169 (231)
T 3aji_A           94 V-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQD  169 (231)
T ss_dssp             H-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCC
T ss_pred             H-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccC
Confidence            9 7999999999999999999999999999999999988765  567899999999999999999999998 89999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHH
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILL  319 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (644)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++                               .
T Consensus       170 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~-------------------------------~  218 (231)
T 3aji_A          170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG-------------------------------L  218 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHH-------------------------------H
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHH-------------------------------H
Confidence            999999999999999999999999999999999999999999987766                               6


Q ss_pred             HHHHHHHHcCCCC
Q psy2733         320 AVFLFLVKHGAPL  332 (644)
Q Consensus       320 ~iv~~Ll~~Gadi  332 (644)
                      +++++|+++|+++
T Consensus       219 ~i~~lL~~~~a~i  231 (231)
T 3aji_A          219 ILKRLAEGEEASM  231 (231)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHccccccC
Confidence            7999999998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-37  Score=330.21  Aligned_cols=179  Identities=16%  Similarity=0.228  Sum_probs=164.0

Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCC---CCccccCCCCCcHHHHHHHcC---CHHHHHHHHHh
Q psy2733         122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE---VNLYLENSKGFNILNYAVLRG---NMKVTEKILAL  195 (644)
Q Consensus       122 v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~---~~~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~  195 (644)
                      +++|+++|++++..|..|.||||+|+..|+.+++++|++ .+   .+++..+..|.||||+|+..+   +.+++++|++.
T Consensus       182 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~  260 (373)
T 2fo1_E          182 VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLN-STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK  260 (373)
T ss_dssp             HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTT-SHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHh-cCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC
Confidence            344889999999999999999999999999999999999 55   789999999999999999998   89999999999


Q ss_pred             cCCccCC------cCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy2733         196 NRNLATV------PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD  269 (644)
Q Consensus       196 ~~~~~~~------~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn  269 (644)
                      ++++...      ..+..|.||||+|+..|+.+++++|++..+++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       261 g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  340 (373)
T 2fo1_E          261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE  340 (373)
T ss_dssp             TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            9887642      2356899999999999999999999998679999999999999999999999999999999999999


Q ss_pred             cccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCC
Q psy2733         270 IQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPL  332 (644)
Q Consensus       270 ~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi  332 (644)
                      .+|..|+||||+|+..++                               .+++++|+++|++.
T Consensus       341 ~~d~~g~t~l~~A~~~g~-------------------------------~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          341 AVDATDHTARQLAQANNH-------------------------------HNIVDIFDRCRPER  372 (373)
T ss_dssp             CCCSSSCCHHHHHHHTTC-------------------------------HHHHHHHHTTC---
T ss_pred             CCCCCCCCHHHHHHHcCC-------------------------------HHHHHHHHhcCccc
Confidence            999999999999999999                               77999999999863

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.2e-36  Score=316.66  Aligned_cols=260  Identities=22%  Similarity=0.177  Sum_probs=219.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++| .++++++.                   
T Consensus        59 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-------------------  119 (351)
T 3utm_A           59 STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-------------------  119 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-------------------
Confidence            5999999999999999999999999999999999999999999999999999 88888877                   


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHH------
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDA------  146 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A------  146 (644)
                                                   .+..|.||||+|+       +++|+++|++++..+..|.||+++|      
T Consensus       120 -----------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~  170 (351)
T 3utm_A          120 -----------------------------MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR  170 (351)
T ss_dssp             -----------------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHH
T ss_pred             -----------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhH
Confidence                                         7778999999996       9999999999999999999997764      


Q ss_pred             ---------------HHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCccCCcCCCCC
Q psy2733         147 ---------------VAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR---GNMKVTEKILALNRNLATVPKTSDG  208 (644)
Q Consensus       147 ---------------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g  208 (644)
                                     +..++.+.++.++. .+......+..|.||||+|+..   +..+++++|++.+.++..  .+..|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~--~~~~g  247 (351)
T 3utm_A          171 ERLTYEFKGHSLLQAAREADLAKVKKTLA-LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE--KNKDF  247 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC--CCTTC
T ss_pred             HHHHhhhcccHHHHHHHhccHHHHHHHHH-hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC--cCCCC
Confidence                           56677777777777 3444445678899999999999   568999999999988765  56889


Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCc
Q psy2733         209 FTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNF  288 (644)
Q Consensus       209 ~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~  288 (644)
                      +||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|.     
T Consensus       248 ~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~-----  321 (351)
T 3utm_A          248 MTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----  321 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh-----
Confidence            9999999999999999999998 8999999999999999999999999999999999999999999999999983     


Q ss_pred             ccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCC
Q psy2733         289 YKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDT  350 (644)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~  350 (644)
                                                    .+++++|.+.+.   ....++.+++..|++.+
T Consensus       322 ------------------------------~~~~~~l~~~~~---~~~~~~~~~l~~A~~~g  350 (351)
T 3utm_A          322 ------------------------------EAVQQILSESTP---MRTSDVDYRLLEASKAG  350 (351)
T ss_dssp             ------------------------------HHHHHHHHHC----------------------
T ss_pred             ------------------------------HHHHHHHHhccc---cccCcceeehhhhhccC
Confidence                                          458888888764   35567888898888554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-38  Score=318.01  Aligned_cols=209  Identities=23%  Similarity=0.249  Sum_probs=171.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC--------CcccCCCCCcHHHHHHhcCCHH-HHHHHhhccCCCccchhhhhhhhhc
Q psy2733           2 TLLHILAYQGCVEELNILLARGAC--------VYYPDDAGDTALHYAAFGNKPD-AIQINSHVSGANRSRKHIYKERHRT   72 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~--------~n~~d~~G~TpLh~Aa~~g~~e-iv~lL~~~a~~~~~~~~~~~~~~~~   72 (644)
                      |||+.||..|++++|++||+.|++        ++..|..|.||||+|+..++.+ +++                      
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~----------------------   70 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLA----------------------   70 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC----------------------------------------------------------
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHH----------------------
Confidence            799999999999999999999875        4667888999999999877643 333                      


Q ss_pred             cccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2733          73 VTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFE  152 (644)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~  152 (644)
                                                                         .|++.|+++|.+|.+|+||||+|+..|+.
T Consensus        71 ---------------------------------------------------~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~   99 (269)
T 4b93_B           71 ---------------------------------------------------KVPASGLGVNVTSQDGSSPLHVAALHGRA   99 (269)
T ss_dssp             -------------------------------------------------------CCCCTTCCCTTSCCHHHHHHHTTCT
T ss_pred             ---------------------------------------------------HHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence                                                               38889999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcC
Q psy2733         153 EIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK  232 (644)
Q Consensus       153 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g  232 (644)
                      +++++|++ .+++++..+..|.||+++|+..++.++++.|++.+++++.  .|..|+||||+|+..|+.+++++|++. |
T Consensus       100 ~~v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~--~d~~g~TpL~~A~~~g~~~~v~~Ll~~-g  175 (269)
T 4b93_B          100 DLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK--KDLSGNTPLIYACSGGHHELVALLLQH-G  175 (269)
T ss_dssp             THHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTCCCHHHHHHHTTCGGGHHHHHHT-T
T ss_pred             HHHHHHHh-cCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHC-C
Confidence            99999999 7999999999999999999999999999999999988766  668999999999999999999999998 8


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       233 ~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      +++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+.+++
T Consensus       176 advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          176 ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999999999999986654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-36  Score=312.32  Aligned_cols=245  Identities=23%  Similarity=0.254  Sum_probs=211.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      ||||+||..|++++|++|+++|++++.+|..|+||||+|+..|+.+++++                              
T Consensus        42 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~------------------------------   91 (299)
T 1s70_B           42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF------------------------------   91 (299)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHH------------------------------
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH------------------------------
Confidence            79999999999999999999999999999999999999999999999987                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |+++|++++..|..|+||||+|+..|+.+++++|++ 
T Consensus        92 -------------------------------------------Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-  127 (299)
T 1s70_B           92 -------------------------------------------LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS-  127 (299)
T ss_dssp             -------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             -------------------------------------------HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-
Confidence                                                       788889999999999999999999999999999999 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCC
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK  241 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~  241 (644)
                      .|++++..+..|.||||+|+..++.++++.++........... ..+.+++        ...+..++..........+..
T Consensus       128 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~  198 (299)
T 1s70_B          128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR-KEEERIM--------LRDARQWLNSGHINDVRHAKS  198 (299)
T ss_dssp             TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHH--------HHHHHHHHHHTCCCCCCCTTT
T ss_pred             CCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhh-hhhhhHH--------HHHHHHHHhccCcchhhhcCC
Confidence            7999999999999999999999999999988875432211100 1122222        234455666656666677889


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHH
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV  321 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  321 (644)
                      |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++                               .++
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~-------------------------------~~~  247 (299)
T 1s70_B          199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK-------------------------------EEA  247 (299)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC-------------------------------HHH
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCC-------------------------------HHH
Confidence            9999999999999999999999999999999999999999999998                               779


Q ss_pred             HHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHHHHHHHhhh
Q psy2733         322 FLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHARE  362 (644)
Q Consensus       322 v~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~~~~~  362 (644)
                      +++|+++|++++.+|..|+|||++|.+  +..+.+.++...
T Consensus       248 v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~l~~l~~~  286 (299)
T 1s70_B          248 CRILVENLCDMEAVNKVGQTAFDVADE--DILGYLEELQKK  286 (299)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCTTTSCCS--GGGHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHH--HHHHHHHHHHHH
Confidence            999999999999999999999999973  455555555443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-37  Score=312.88  Aligned_cols=230  Identities=19%  Similarity=0.280  Sum_probs=177.7

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccC
Q psy2733          27 YYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED  105 (644)
Q Consensus        27 n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (644)
                      ..+|..+.|||+.|+..|+.++|++| ..+++...                                             
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~---------------------------------------------   39 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLE---------------------------------------------   39 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccc---------------------------------------------
Confidence            34677889999999999999999997 55543311                                             


Q ss_pred             CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHhcCCCCCccccCCCCCcHHHHHHHcC
Q psy2733         106 MLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFE-EIQLLLLSHPEVNLYLENSKGFNILNYAVLRG  184 (644)
Q Consensus       106 ~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  184 (644)
                                           .....++..+..|.|||++|+..+.. .++++|++ .|++++..|.+|.||||+|+..|
T Consensus        40 ---------------------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~-~Gadvn~~d~~G~TpLh~A~~~g   97 (269)
T 4b93_B           40 ---------------------DAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA-SGLGVNVTSQDGSSPLHVAALHG   97 (269)
T ss_dssp             ---------------------------------------------------------CCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ---------------------cccccccccCccCCCHHHHHHHhCCHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcC
Confidence                                 11223456678899999999988865 58889998 79999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q psy2733         185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR  264 (644)
Q Consensus       185 ~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~  264 (644)
                      +.+++++|++.++++..  .+..|.||+|+|+..++.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        98 ~~~~v~~Ll~~~a~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  174 (269)
T 4b93_B           98 RADLIPLLLKHGANAGA--RNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQH  174 (269)
T ss_dssp             CTTHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT
T ss_pred             cHHHHHHHHhcCCCcCc--cCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            99999999999988765  567899999999999999999999998 899999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcch
Q psy2733         265 DVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLD  344 (644)
Q Consensus       265 gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~  344 (644)
                      |+++|.+|..|+||||+|+..|+                               .+++++|+++|||++.+|.+|+||||
T Consensus       175 gadvn~~~~~g~t~Lh~A~~~g~-------------------------------~~~v~~Ll~~Gad~~~~d~~G~TpL~  223 (269)
T 4b93_B          175 GASINASNNKGNTALHEAVIEKH-------------------------------VFVVELLLLHGASVQVLNKRQRTAVD  223 (269)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTC-------------------------------HHHHHHHHHTTCCSCCCCTTSCCSGG
T ss_pred             CCCCCccccCCCcHHHHHHHcCC-------------------------------HHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999                               78999999999999999999999999


Q ss_pred             hhhcCCcHHHHHH
Q psy2733         345 LILEDTSLLNEIM  357 (644)
Q Consensus       345 ~A~~~~~~~~~l~  357 (644)
                      +|+++++++++|.
T Consensus       224 ~A~~~~~i~~lL~  236 (269)
T 4b93_B          224 CAEQNSKIMELLQ  236 (269)
T ss_dssp             GSCTTCHHHHHTT
T ss_pred             HHHhCCcHHHHHH
Confidence            9998777665554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.5e-35  Score=292.77  Aligned_cols=191  Identities=25%  Similarity=0.296  Sum_probs=174.8

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHhcCCC--CCccc-cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCch
Q psy2733         134 IQDNNQDTPMHDAVAKGFEEIQLLLLSHPE--VNLYL-ENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFT  210 (644)
Q Consensus       134 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~--~~~~~-~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T  210 (644)
                      ..|..|.||||+|+..|+.+++++|++ .+  .+++. .+..|.||||+|+..|+.++++.|++.+........+..|.|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t  109 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT  109 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH-TCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-ccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCC
Confidence            367899999999999999999999999 67  56666 788999999999999999999999999844444446788999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCcHHHHHHHcCCcc
Q psy2733         211 PLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD-VALDIQDIDGNGLLHFLFIKKNFY  289 (644)
Q Consensus       211 ~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~g-advn~~d~~G~T~Lh~A~~~~~~~  289 (644)
                      |||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..++  
T Consensus       110 ~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~--  186 (228)
T 2dzn_A          110 CLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH--  186 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC--
T ss_pred             HHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCC--
Confidence            99999999999999999998 8999999999999999999999999999999999 9999999999999999999998  


Q ss_pred             cccccccCCchhHHhhhhcCCCCCccchHHHHHHHHH-HcCCCCCCCCCCCCCcchhhhcCCcHHHHHHH
Q psy2733         290 KTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLV-KHGAPLSLENNNRQKPLDLILEDTSLLNEIME  358 (644)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll-~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~  358 (644)
                                                   .+++++|+ ++|++++.+|..|+|||++|. ..++.+.+++
T Consensus       187 -----------------------------~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~-~~~~~~~l~~  226 (228)
T 2dzn_A          187 -----------------------------GDAAVLLVEKYGAEYDLVDNKGAKAEDVAL-NEQVKKFFLN  226 (228)
T ss_dssp             -----------------------------HHHHHHHHHHHCCCSCCBCTTSCBGGGGCS-STTHHHHHHT
T ss_pred             -----------------------------HHHHHHHHHhcCCCCCccCCCCCcHHHHHH-HHHHHHHHHh
Confidence                                         77999999 999999999999999999998 5566666553

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-35  Score=293.61  Aligned_cols=208  Identities=22%  Similarity=0.235  Sum_probs=191.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYY-PDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~-~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +||||+|+..|+.++|++|++.|+++.. +|..|+||||+|+..|+.+++++                            
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----------------------------   54 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF----------------------------   54 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHH----------------------------
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHH----------------------------
Confidence            6999999999999999999999988654 89999999999999999999998                            


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCC--CCCCC-CCCCCCcHHHHHHHcCCHHHHH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNG--CNVNI-QDNNQDTPMHDAVAKGFEEIQL  156 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~g--ad~n~-~d~~G~TpL~~A~~~g~~~iv~  156 (644)
                                                                   |++.|  .+++. .+..|+||||+|+..|+.++++
T Consensus        55 ---------------------------------------------Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~   89 (228)
T 2dzn_A           55 ---------------------------------------------LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK   89 (228)
T ss_dssp             ---------------------------------------------HHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             ---------------------------------------------HHhccccccccccCCCCCCCHHHHHHHcCCHHHHH
Confidence                                                         45555  33344 6789999999999999999999


Q ss_pred             HHhcCCC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCC
Q psy2733         157 LLLSHPE--VNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN  234 (644)
Q Consensus       157 ~Ll~~~~--~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~  234 (644)
                      +|++ .+  .+++..+..|.||||+|+..|+.+++++|++.++++..  .+..|+||||+|+..|+.+++++|++.+.++
T Consensus        90 ~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  166 (228)
T 2dzn_A           90 SLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFNQIPLHRAASVGSLKLIELLCGLGKSA  166 (228)
T ss_dssp             HHHS-SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             HHHh-CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            9999 56  88999999999999999999999999999999988765  5678999999999999999999999984499


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcccCCCCcHHHHHHH
Q psy2733         235 INALDLKKRTPLMAAVGQGQTSVINYLM-LRDVALDIQDIDGNGLLHFLFI  284 (644)
Q Consensus       235 in~~d~~G~TpL~~Aa~~g~~~iv~~Ll-~~gadvn~~d~~G~T~Lh~A~~  284 (644)
                      ++.+|..|+||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+.
T Consensus       167 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            9999999999999999999999999999 8999999999999999999964

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=292.64  Aligned_cols=226  Identities=25%  Similarity=0.324  Sum_probs=205.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++                             
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~-----------------------------   60 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY-----------------------------   60 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH-----------------------------
T ss_pred             chHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHH-----------------------------
Confidence            489999999999999999999999999999999999999999999999988                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQD-NNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d-~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                  |++.|++++..+ ..|.||||+|+..|+.+++++|+
T Consensus        61 --------------------------------------------Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll   96 (240)
T 3eu9_A           61 --------------------------------------------YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM   96 (240)
T ss_dssp             --------------------------------------------HHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH
Confidence                                                        556666666444 45999999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCc-HHHHHHHHHhcCCCcccC
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH-IEIVELLVEKYKVNINAL  238 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~-~~~v~~Ll~~~g~~in~~  238 (644)
                      + .|++++..+..|.||||+|+..|+.+++++|++.++++..  .+..|.||||+|+..++ .+++++|++. |++++..
T Consensus        97 ~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~~L~~~-~~~~~~~  172 (240)
T 3eu9_A           97 K-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLG  172 (240)
T ss_dssp             H-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHCCSSTTHHHHHHT-TCCTTCC
T ss_pred             H-cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc--cCCCCCcHHHHHHHhCChHHHHHHHHhc-CCCcchh
Confidence            9 7999999999999999999999999999999999987765  56789999999997766 8899999988 8999999


Q ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccch
Q psy2733         239 DL-KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGI  317 (644)
Q Consensus       239 d~-~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (644)
                      +. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++                              
T Consensus       173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~------------------------------  222 (240)
T 3eu9_A          173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN------------------------------  222 (240)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTC------------------------------
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc------------------------------
Confidence            97 99999999999999999999999999999999999999999999999                              


Q ss_pred             HHHHHHHHHHcCCCCCC
Q psy2733         318 LLAVFLFLVKHGAPLSL  334 (644)
Q Consensus       318 ~~~iv~~Ll~~Gadi~~  334 (644)
                       .+++++|+++|++...
T Consensus       223 -~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          223 -VWMINHLQEARQAKGY  238 (240)
T ss_dssp             -HHHHHHHHHHC-----
T ss_pred             -HHHHHHHHHhhhccCc
Confidence             7799999999987654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.2e-35  Score=290.80  Aligned_cols=217  Identities=22%  Similarity=0.235  Sum_probs=200.2

Q ss_pred             cCCHHHHHHHHHCCCCCccc-CCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCC
Q psy2733          10 QGCVEELNILLARGACVYYP-DDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVE   88 (644)
Q Consensus        10 ~G~~e~vk~LL~~Ga~~n~~-d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (644)
                      .|+.+++++|++.|++++.. |..|+||||+|+..|+.+++++                                     
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~-------------------------------------   43 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR-------------------------------------   43 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH-------------------------------------
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHH-------------------------------------
Confidence            37889999999999998776 8999999999999999999987                                     


Q ss_pred             CCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccc
Q psy2733          89 PETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYL  168 (644)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~  168 (644)
                                                          |+++|++++..|..|+||||+|+..|+.+++++|++....+++.
T Consensus        44 ------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~   87 (223)
T 2f8y_A           44 ------------------------------------LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA   87 (223)
T ss_dssp             ------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTC
T ss_pred             ------------------------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence                                                77888889999999999999999999999999999954458999


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHH
Q psy2733         169 ENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA  248 (644)
Q Consensus       169 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~  248 (644)
                      .+..|.||||+|+..|+.+++++|++.++++..  .+..|+||||+|+..|+.+++++|++. |++++.+|..|.||||+
T Consensus        88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~  164 (223)
T 2f8y_A           88 RMHDGTTPLILAARLAVEGMLEDLINSHADVNA--VDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFL  164 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC--cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHH
Confidence            999999999999999999999999999988765  557899999999999999999999998 89999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHc
Q psy2733         249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKH  328 (644)
Q Consensus       249 Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~  328 (644)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..++                               .+++++|+++
T Consensus       165 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~-------------------------------~~i~~~L~~~  213 (223)
T 2f8y_A          165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH-------------------------------HDIVRLLDEY  213 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-------------------------------HHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc-------------------------------hHHHHHHHHc
Confidence            999999999999999999999999999999999999998                               7799999999


Q ss_pred             CCCCC
Q psy2733         329 GAPLS  333 (644)
Q Consensus       329 Gadi~  333 (644)
                      |+...
T Consensus       214 g~~~~  218 (223)
T 2f8y_A          214 NLVRS  218 (223)
T ss_dssp             TCSSC
T ss_pred             CCCcc
Confidence            98753

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.5e-36  Score=306.73  Aligned_cols=250  Identities=15%  Similarity=0.147  Sum_probs=205.7

Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCC
Q psy2733          10 QGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVE   88 (644)
Q Consensus        10 ~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (644)
                      ..+.+.+..||..+ +++.+|..|+||||+|+..|+.+++++| ..+++++.                            
T Consensus         9 ~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------------------   59 (285)
T 3kea_A            9 TWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL----------------------------   59 (285)
T ss_dssp             GCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC----------------------------
T ss_pred             hcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----------------------------
Confidence            33444444444443 5777888888888888888888888888 77777654                            


Q ss_pred             CCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          89 PETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                          .  +|.||||+|+       +++|+++|++++..|..|+||||+|+..|+.+++++|++ 
T Consensus        60 --------------------~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-  116 (285)
T 3kea_A           60 --------------------L--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-  116 (285)
T ss_dssp             --------------------C--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             --------------------C--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh-
Confidence                                3  3678888885       888999999999999999999999999999999999999 


Q ss_pred             CCCCccccCCCC-CcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCC
Q psy2733         162 PEVNLYLENSKG-FNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL  240 (644)
Q Consensus       162 ~~~~~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~  240 (644)
                      .|++++..+..| .||||+|+..|+.+++++|++.++....  . ..|.||||+|+..|+.+++++|++. |++++.+|.
T Consensus       117 ~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~-~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~  192 (285)
T 3kea_A          117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--L-AILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNS  192 (285)
T ss_dssp             HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--C-STHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCC
T ss_pred             cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--c-cCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccC
Confidence            699999999999 7999999999999999999999877632  1 3899999999999999999999998 899999999


Q ss_pred             CCCCH-HHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHH
Q psy2733         241 KKRTP-LMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILL  319 (644)
Q Consensus       241 ~G~Tp-L~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (644)
                      .|+|| ||+|+..|+.+++++|+++|++++.+|.       .|+..++                               .
T Consensus       193 ~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~-------------------------------~  234 (285)
T 3kea_A          193 LLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDD-------------------------------A  234 (285)
T ss_dssp             CBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTC-------------------------------H
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCC-------------------------------H
Confidence            99998 9999999999999999999999999883       3444555                               7


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHHHH
Q psy2733         320 AVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEI  356 (644)
Q Consensus       320 ~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l  356 (644)
                      +++++|+++|++++.....  ..+.++. +..+.+.+
T Consensus       235 ~iv~~Ll~~g~~~~~~~~~--~~~~~~~-~~~~~~ii  268 (285)
T 3kea_A          235 EIAKMIIEKHVEYKSDSYT--KDLDIVK-NNKLDEII  268 (285)
T ss_dssp             HHHHHHHHHHHHHTTCTTT--TTCHHHH-TCSHHHHH
T ss_pred             HHHHHHHHcCCCCCCcccc--chHHHHh-hhhHHHHH
Confidence            8999999999987655433  3455544 44443333

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.3e-34  Score=283.94  Aligned_cols=182  Identities=26%  Similarity=0.396  Sum_probs=173.6

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchH
Q psy2733         132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP  211 (644)
Q Consensus       132 ~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~  211 (644)
                      ++..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.++++..  .+..|.||
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~  109 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA--VNQNGCTP  109 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCC--CCCCCCCH
Confidence            45678899999999999999999999999 7999999999999999999999999999999999988765  56789999


Q ss_pred             HHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccc
Q psy2733         212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKT  291 (644)
Q Consensus       212 Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~  291 (644)
                      ||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++    
T Consensus       110 L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----  184 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER----  184 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC----
T ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCC----
Confidence            9999999999999999998 89999999999999999999999999999999999999999999999999999998    


Q ss_pred             cccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhc
Q psy2733         292 PITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILE  348 (644)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~  348 (644)
                                                 .+++++|+++|++++.+|..|+|||++|++
T Consensus       185 ---------------------------~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          185 ---------------------------VEEAKFLVTQGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             ---------------------------HHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred             ---------------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence                                       779999999999999999999999999984

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.6e-35  Score=313.03  Aligned_cols=230  Identities=22%  Similarity=0.253  Sum_probs=202.0

Q ss_pred             CCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCccccccccccc
Q psy2733          23 GACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRM  102 (644)
Q Consensus        23 Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (644)
                      +.+++..|.+|+||||+|+..|+.++|++                                                   
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~---------------------------------------------------   38 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRR---------------------------------------------------   38 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHH---------------------------------------------------
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHH---------------------------------------------------
Confidence            35677789999999999999999999987                                                   


Q ss_pred             ccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHH
Q psy2733         103 NEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL  182 (644)
Q Consensus       103 ~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~  182 (644)
                                            |++.|++++..|..|.||||+|+..|+.+++++|++ .+++++  +..|.||||+|+.
T Consensus        39 ----------------------Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~--~~~g~t~L~~A~~   93 (364)
T 3ljn_A           39 ----------------------LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHS--LWHGQKPIHLAVM   93 (364)
T ss_dssp             ----------------------HHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH-HCCCCC--CBTTBCHHHHHHH
T ss_pred             ----------------------HHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCcc--ccCCCCHHHHHHH
Confidence                                  788899999999999999999999999999999999 677544  4579999999999


Q ss_pred             cCCHHHHHHHHHh----cCCccC---------------CcCCCCCchHHHHHHhcC--cHHHHHHHHHhcCCCcccCCCC
Q psy2733         183 RGNMKVTEKILAL----NRNLAT---------------VPKTSDGFTPLHVACFND--HIEIVELLVEKYKVNINALDLK  241 (644)
Q Consensus       183 ~g~~~~v~~Ll~~----~~~~~~---------------~~~d~~g~T~Lh~A~~~g--~~~~v~~Ll~~~g~~in~~d~~  241 (644)
                      .|+.+++++|++.    +.....               ...+..|.||||+|+..|  +.+++++|++. |++++.+|..
T Consensus        94 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~  172 (364)
T 3ljn_A           94 ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKA  172 (364)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTT
T ss_pred             cCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCC
Confidence            9999999999998    554432               013467999999999999  99999999999 8999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC-----CCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccc
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLRDVA-----LDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHG  316 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~gad-----vn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (644)
                      |.||||+|+..|+.+++++|+++|++     ++.+|..|+||||+|+..++                             
T Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-----------------------------  223 (364)
T 3ljn_A          173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-----------------------------  223 (364)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-----------------------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-----------------------------
Confidence            99999999999999999999999999     99999999999999999998                             


Q ss_pred             hHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCC--cHHHHHHHHh
Q psy2733         317 ILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDT--SLLNEIMEHA  360 (644)
Q Consensus       317 ~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~--~~~~~l~~~~  360 (644)
                        .+++++|+++|++++.+|..|+|||++|+..+  ++++.|++..
T Consensus       224 --~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          224 --EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             --HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred             --HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence              78999999999999999999999999999654  3455555543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-36  Score=314.13  Aligned_cols=261  Identities=15%  Similarity=0.100  Sum_probs=198.3

Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCC
Q psy2733          11 GCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEP   89 (644)
Q Consensus        11 G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (644)
                      ...++|++|+++|++++.+|..|.|+++     |+.++|++| .+|++++...      +..+......           
T Consensus        30 ~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~------~~~a~~~~~~-----------   87 (327)
T 1sw6_A           30 FTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQE------MPTSLNNDSS-----------   87 (327)
T ss_dssp             CCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------------
T ss_pred             hcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcccc------chHhhhcccc-----------
Confidence            4557899999999999999999999987     999999999 8998865410      0000000000           


Q ss_pred             CCcccccccccccccCCCCCCcccchhhH-------HHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          90 ETPMLNMKFIPRMNEDMLDTPSAECSGIL-------IKQDFVLLRNGCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~-------~a~v~~Ll~~gad~n~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                .+    .........+.++       ..++++|++.|+++|. .|..|+||||+|+..|+.+++++|++ 
T Consensus        88 ----------~~----~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-  152 (327)
T 1sw6_A           88 ----------NR----NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-  152 (327)
T ss_dssp             ------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             ----------cc----cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-
Confidence                      00    0000001111112       2248889999999999 89999999999999999999999999 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHHhc-CCccCCcCCCCCchHHHHHHh----cCcHHHHHHHHHhc--
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGN---MKVTEKILALN-RNLATVPKTSDGFTPLHVACF----NDHIEIVELLVEKY--  231 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~~-~~~~~~~~d~~g~T~Lh~A~~----~g~~~~v~~Ll~~~--  231 (644)
                      .|++++.+|..|.||||+|+..|+   .++++.|++.+ +++..  .|..|+||||+|+.    .|+.+++++|++..  
T Consensus       153 ~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~--~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~  230 (327)
T 1sw6_A          153 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL--EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG  230 (327)
T ss_dssp             TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE--ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC--CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence            799999999999999999999998   67788888776 33332  56899999999999    89999999999864  


Q ss_pred             -----------------CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCccccccc
Q psy2733         232 -----------------KVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPIT  294 (644)
Q Consensus       232 -----------------g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~  294 (644)
                                       |++++.+|..|.||||+|+.      +++|+++  +++.+|..|+||||+|+..++       
T Consensus       231 ~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~-------  295 (327)
T 1sw6_A          231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGN-------  295 (327)
T ss_dssp             HHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCC-------
T ss_pred             HHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCC-------
Confidence                             78999999999999999985      8999988  688999999999999999999       


Q ss_pred             ccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcC
Q psy2733         295 REKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED  349 (644)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~  349 (644)
                                              .+++++|+++||+++.+|.+|+||||+|++.
T Consensus       296 ------------------------~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          296 ------------------------ISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             ------------------------HHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             ------------------------HHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence                                    7899999999999999999999999999853

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.5e-34  Score=293.48  Aligned_cols=210  Identities=19%  Similarity=0.167  Sum_probs=185.5

Q ss_pred             CCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHH
Q psy2733         109 TPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV  181 (644)
Q Consensus       109 ~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~  181 (644)
                      .+..|.||||+|+       +++|+++|++++..  +|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+
T Consensus        27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDKGNTALYYAV  103 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHH
Confidence            7889999999996       99999999999988  49999999999999999999999 79999999999999999999


Q ss_pred             HcCCHHHHHHHHHhcCCccCCcCCCCC-chHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Q psy2733         182 LRGNMKVTEKILALNRNLATVPKTSDG-FTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY  260 (644)
Q Consensus       182 ~~g~~~~v~~Ll~~~~~~~~~~~d~~g-~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~  260 (644)
                      ..|+.+++++|++.++++..  .+..| .||||+|+..|+.+++++|++. |.++... ..|.||||+|+..|+.+++++
T Consensus       104 ~~g~~~~v~~Ll~~ga~~~~--~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~g~~~~v~~  179 (285)
T 3kea_A          104 DSGNMQTVKLFVKKNWRLMF--YGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFDL-AILLSCIHITIKNGHVDMMIL  179 (285)
T ss_dssp             HTTCHHHHHHHHHHCGGGGG--CSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCCC-STHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHhcCCCCCc--cCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCccccc-cCCccHHHHHHHcChHHHHHH
Confidence            99999999999999888765  55677 7999999999999999999998 5655222 289999999999999999999


Q ss_pred             HHHCCCCCCcccCCCCcH-HHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCC
Q psy2733         261 LMLRDVALDIQDIDGNGL-LHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNR  339 (644)
Q Consensus       261 Ll~~gadvn~~d~~G~T~-Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G  339 (644)
                      |+++|++++.+|..|+|| ||+|+..++                               .+++++|+++|++++.+|.  
T Consensus       180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~-------------------------------~~~v~~Ll~~gad~~~~~~--  226 (285)
T 3kea_A          180 LLDYMTSTNTNNSLLFIPDIKLAIDNKD-------------------------------IEMLQALFKYDINIYSANL--  226 (285)
T ss_dssp             HHHHHHHTCTTCCCBCCTTHHHHHHHTC-------------------------------HHHHHHHTTSCBCSTTTTG--
T ss_pred             HHHcCCCCCcccCCCCChHHHHHHHcCC-------------------------------HHHHHHHHHcCCCCCCCCh--
Confidence            999999999999999998 999999998                               7799999999999999984  


Q ss_pred             CCcchhhh--cCCcHHHHHHHHhhhh
Q psy2733         340 QKPLDLIL--EDTSLLNEIMEHAREY  363 (644)
Q Consensus       340 ~TpL~~A~--~~~~~~~~l~~~~~~~  363 (644)
                           .|+  .+.++++.|++...+.
T Consensus       227 -----~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          227 -----ENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             -----GGGTTTCHHHHHHHHHHHHHH
T ss_pred             -----hhhhcCCHHHHHHHHHcCCCC
Confidence                 233  2345666776665443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.4e-34  Score=288.15  Aligned_cols=220  Identities=21%  Similarity=0.205  Sum_probs=192.0

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccC
Q psy2733          27 YYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED  105 (644)
Q Consensus        27 n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (644)
                      +.+|.+|+||||+|+..|+.+++++| ..                                                   
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---------------------------------------------------   30 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQ---------------------------------------------------   30 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC----------------------------------------------------
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHH---------------------------------------------------
Confidence            35789999999999999999888764 21                                                   


Q ss_pred             CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCC
Q psy2733         106 MLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN  185 (644)
Q Consensus       106 ~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  185 (644)
                                         ....|+++|..|..|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+
T Consensus        31 -------------------~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~   90 (236)
T 1ikn_D           31 -------------------VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELRDFRGNTPLHLACEQGC   90 (236)
T ss_dssp             -----------------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             -------------------hhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCC
Confidence                               223355788899999999999999999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcc----CCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCC-CCCCHHHHHHHcCCHHHHHH
Q psy2733         186 MKVTEKILALNRNLA----TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL-KKRTPLMAAVGQGQTSVINY  260 (644)
Q Consensus       186 ~~~v~~Ll~~~~~~~----~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~-~G~TpL~~Aa~~g~~~iv~~  260 (644)
                      .+++++|++.++...    ....+..|+||||+|+..|+.+++++|++. |++++.++. .|.||||+|+..|+.+++++
T Consensus        91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~  169 (236)
T 1ikn_D           91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSL  169 (236)
T ss_dssp             HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999987521    233557899999999999999999999998 899999998 99999999999999999999


Q ss_pred             HHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCC--CCCCC
Q psy2733         261 LMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLS--LENNN  338 (644)
Q Consensus       261 Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~--~~n~~  338 (644)
                      |+++|++++.+|..|+||||+|+..++                               .+++++|+++|++..  ..+..
T Consensus       170 Ll~~ga~~~~~~~~g~tpl~~A~~~~~-------------------------------~~~~~~Ll~~ga~~~~~~~~~~  218 (236)
T 1ikn_D          170 LLKCGADVNRVTYQGYSPYQLTWGRPS-------------------------------TRIQQQLGQLTLENLQMLPESE  218 (236)
T ss_dssp             HHTTTCCSCCCCTTCCCGGGGCTTSSC-------------------------------HHHHHHHHTTSCGGGSSCCCCC
T ss_pred             HHHcCCCCCcccCCCCCHHHHHHccCc-------------------------------hHHHHHHHHcchhhhhcCCccc
Confidence            999999999999999999999999988                               779999999999876  88999


Q ss_pred             CCCcchhhhcC
Q psy2733         339 RQKPLDLILED  349 (644)
Q Consensus       339 G~TpL~~A~~~  349 (644)
                      |.||.+.+...
T Consensus       219 ~~~~~~~~~~~  229 (236)
T 1ikn_D          219 DEESYDTESEF  229 (236)
T ss_dssp             TTTCCCCC---
T ss_pred             hHHHHhhhccc
Confidence            99999988743

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.5e-34  Score=289.59  Aligned_cols=246  Identities=18%  Similarity=0.191  Sum_probs=184.6

Q ss_pred             CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccC
Q psy2733          26 VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED  105 (644)
Q Consensus        26 ~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (644)
                      ++.+|.+|+||||+|+..|+.++|++|                                                     
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~L-----------------------------------------------------   28 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFL-----------------------------------------------------   28 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHH-----------------------------------------------------
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHH-----------------------------------------------------
Confidence            467899999999999999999999984                                                     


Q ss_pred             CCCCCcccchhhHHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHH
Q psy2733         106 MLDTPSAECSGILIKQDFVLLRNGCN---VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL  182 (644)
Q Consensus       106 ~~~~~~~~~t~L~~a~v~~Ll~~gad---~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~  182 (644)
                                          ++.|++   ++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+.
T Consensus        29 --------------------l~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~   87 (282)
T 1oy3_D           29 --------------------LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACR   87 (282)
T ss_dssp             --------------------HHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCHHHHHTT
T ss_pred             --------------------HhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHH
Confidence                                444444   56788899999999999999999999999 799999999999999999999


Q ss_pred             cCCHHHHHHHHHhcCCccCCc-----------CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHH
Q psy2733         183 RGNMKVTEKILALNRNLATVP-----------KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG  251 (644)
Q Consensus       183 ~g~~~~v~~Ll~~~~~~~~~~-----------~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~  251 (644)
                      .|+.+++++|++.++......           ....+.++++.++..+....+..++...+.+++.+|..|.||||+|+.
T Consensus        88 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  167 (282)
T 1oy3_D           88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (282)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHH
Confidence            999999999999886643211           123466778877776665555555545578899999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCcccCC-CCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCC
Q psy2733         252 QGQTSVINYLMLRDVALDIQDID-GNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGA  330 (644)
Q Consensus       252 ~g~~~iv~~Ll~~gadvn~~d~~-G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Ga  330 (644)
                      .|+.+++++|+++|++++.++.. |+||||+|+..++                               .+++++|+++|+
T Consensus       168 ~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~-------------------------------~~~v~~Ll~~ga  216 (282)
T 1oy3_D          168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA-------------------------------ASVLELLLKAGA  216 (282)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-------------------------------HHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCC-------------------------------HHHHHHHHHcCC
Confidence            99999999999999999999865 9999999999998                               779999999999


Q ss_pred             CCCCCCCCCCCcchhhhcCCc--HHHHHHHHhhhhccccCccccchhhhhhh
Q psy2733         331 PLSLENNNRQKPLDLILEDTS--LLNEIMEHAREYVTDLTNENNKVVTAISQ  380 (644)
Q Consensus       331 di~~~n~~G~TpL~~A~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  380 (644)
                      +++.+|..|+||||+|+..++  +++.|+    +...+....+..+.+++..
T Consensus       217 d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          217 DPTARMYGGRTPLGSALLRPNPILARLLR----AHGAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             CTTCCCTTSCCHHHHHHTSSCHHHHHHHH----HTTCCCCCCC---------
T ss_pred             CCcccccCCCCHHHHHHHcCCcHHHHHHH----HcCCCcCcCCCcccccccc
Confidence            999999999999999996543  333333    3444555555555555543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=276.17  Aligned_cols=227  Identities=20%  Similarity=0.248  Sum_probs=204.6

Q ss_pred             CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccC
Q psy2733          26 VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED  105 (644)
Q Consensus        26 ~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (644)
                      ++..|..|.|||++|+..|+.+++++                                                      
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~------------------------------------------------------   27 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRE------------------------------------------------------   27 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHH------------------------------------------------------
T ss_pred             ccccccccchHHHHHHHcCChHHHHH------------------------------------------------------
Confidence            45678899999999999999999987                                                      


Q ss_pred             CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccC-CCCCcHHHHHHHcC
Q psy2733         106 MLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN-SKGFNILNYAVLRG  184 (644)
Q Consensus       106 ~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~A~~~g  184 (644)
                                         |++.|++++..+..|.||||+|+..|+.+++++|++ .+.+++..+ ..|.||||+|+..|
T Consensus        28 -------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~t~L~~A~~~~   87 (240)
T 3eu9_A           28 -------------------LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLGGDLNSTPLHWATRQG   87 (240)
T ss_dssp             -------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred             -------------------HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhcCCcCCChhHHHHHcC
Confidence                               778888888899999999999999999999999999 677776554 45999999999999


Q ss_pred             CHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-HHHHHHHHH
Q psy2733         185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ-TSVINYLML  263 (644)
Q Consensus       185 ~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~-~~iv~~Ll~  263 (644)
                      +.+++++|++.++++..  .+..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..++ .+++++|++
T Consensus        88 ~~~~v~~Ll~~g~~~~~--~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~  164 (240)
T 3eu9_A           88 HLSMVVQLMKYGADPSL--IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT  164 (240)
T ss_dssp             CHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred             CHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence            99999999999888765  567899999999999999999999998 89999999999999999997766 899999999


Q ss_pred             CCCCCCcccC-CCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCc
Q psy2733         264 RDVALDIQDI-DGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKP  342 (644)
Q Consensus       264 ~gadvn~~d~-~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~Tp  342 (644)
                      .|++++..+. .|.||||+|+..++                               .+++++|+++|++++.+|..|+||
T Consensus       165 ~~~~~~~~~~~~g~t~L~~A~~~~~-------------------------------~~~v~~Ll~~g~~~~~~~~~g~t~  213 (240)
T 3eu9_A          165 FNVSVNLGDKYHKNTALHWAVLAGN-------------------------------TTVISLLLEAGANVDAQNIKGESA  213 (240)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHHTC-------------------------------HHHHHHHHHHTCCTTCBCTTSCBH
T ss_pred             cCCCcchhhccCCCcHHHHHHHcCC-------------------------------HHHHHHHHHcCCCCCCcCCCCCCH
Confidence            9999999997 99999999999998                               779999999999999999999999


Q ss_pred             chhhhcCC--cHHHHHHHHh
Q psy2733         343 LDLILEDT--SLLNEIMEHA  360 (644)
Q Consensus       343 L~~A~~~~--~~~~~l~~~~  360 (644)
                      |++|++.+  ++++.|++..
T Consensus       214 l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          214 LDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHcCcHHHHHHHHHhh
Confidence            99999654  3455555433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.4e-32  Score=267.85  Aligned_cols=192  Identities=21%  Similarity=0.244  Sum_probs=181.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++                             
T Consensus        26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~-----------------------------   76 (223)
T 2f8y_A           26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI-----------------------------   76 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH-----------------------------
T ss_pred             CchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH-----------------------------
Confidence            599999999999999999999999999999999999999999999999988                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGC-NVNIQDNNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~ga-d~n~~d~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                  |++.+. +++..+..|.||||+|+..|+.+++++|+
T Consensus        77 --------------------------------------------Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  112 (223)
T 2f8y_A           77 --------------------------------------------LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI  112 (223)
T ss_dssp             --------------------------------------------HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Confidence                                                        555554 67778889999999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD  239 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d  239 (644)
                      + .+++++..+..|.||||+|+..|+.+++++|++.++++..  .+..|.||||+|+..|+.+++++|++. |++++.+|
T Consensus       113 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~  188 (223)
T 2f8y_A          113 N-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAKVLLDH-FANRDITD  188 (223)
T ss_dssp             H-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCC
T ss_pred             H-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccc
Confidence            9 7999999999999999999999999999999999988765  568899999999999999999999998 89999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALD  269 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn  269 (644)
                      ..|.|||++|+..|+.+++++|+++|+...
T Consensus       189 ~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          189 HMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             ccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            999999999999999999999999998754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2e-33  Score=279.74  Aligned_cols=207  Identities=19%  Similarity=0.286  Sum_probs=186.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCC----CCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGA----CVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTE   76 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga----~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~   76 (644)
                      +||||+|+..|+.+++++|++.+.    +++.+|..|+||||+|+..|+.+++++                         
T Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------------------   63 (236)
T 1ikn_D            9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA-------------------------   63 (236)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHC-------------------------
T ss_pred             CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHH-------------------------
Confidence            699999999999999999998865    789999999999999999999999987                         


Q ss_pred             cccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy2733          77 KVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL  156 (644)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~  156 (644)
                                                                      |+++|++++..|..|+||||+|+..|+.++++
T Consensus        64 ------------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   95 (236)
T 1ikn_D           64 ------------------------------------------------LLGAGCDPELRDFRGNTPLHLACEQGCLASVG   95 (236)
T ss_dssp             ------------------------------------------------CCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ------------------------------------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence                                                            77788888999999999999999999999999


Q ss_pred             HHhcCCCCC------ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCC-CCchHHHHHHhcCcHHHHHHHHH
Q psy2733         157 LLLSHPEVN------LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTS-DGFTPLHVACFNDHIEIVELLVE  229 (644)
Q Consensus       157 ~Ll~~~~~~------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~  229 (644)
                      +|++ .+.+      ++..+..|.||||+|+..|+.+++++|++.++++..  .+. .|+||||+|+..|+.+++++|++
T Consensus        96 ~Ll~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~  172 (236)
T 1ikn_D           96 VLTQ-SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA--QEPCNGRTALHLAVDLQNPDLVSLLLK  172 (236)
T ss_dssp             HHHH-STTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHh-cccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999 5544      577888999999999999999999999999988766  444 89999999999999999999999


Q ss_pred             hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--cccCCCCcHHHHHHH
Q psy2733         230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD--IQDIDGNGLLHFLFI  284 (644)
Q Consensus       230 ~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn--~~d~~G~T~Lh~A~~  284 (644)
                      . |++++.+|..|.||||+|+..|+.+++++|+++|++..  .++..|.|+...+..
T Consensus       173 ~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          173 C-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             T-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             c-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            8 89999999999999999999999999999999999876  778888888765543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=9e-32  Score=260.40  Aligned_cols=189  Identities=25%  Similarity=0.268  Sum_probs=175.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCC-CCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGA-CVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga-~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      .||||+||..|+.+.++.|++.+. +++.+|..|+||||+|+..|+.+++++                            
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----------------------------   57 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA----------------------------   57 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH----------------------------
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----------------------------
Confidence            489999999999999999999876 999999999999999999999999987                            


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                   |+++|++++..|..|.||||+|+..|+.+++++|+
T Consensus        58 ---------------------------------------------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll   92 (201)
T 3hra_A           58 ---------------------------------------------LIDRGADINLQNSISDSPYLYAGAQGRTEILAYML   92 (201)
T ss_dssp             ---------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------------------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                                         78888899999999999999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhc-CCccCCcCCCCCchHHHHHHhcCc-----HHHHHHHHHhcCC
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN-RNLATVPKTSDGFTPLHVACFNDH-----IEIVELLVEKYKV  233 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~d~~g~T~Lh~A~~~g~-----~~~v~~Ll~~~g~  233 (644)
                      +..+.+++..+..|.||||+|+..|+.+++++|++.+ .++..  .+..|+||||+|+..++     .+++++|++. |+
T Consensus        93 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~-ga  169 (201)
T 3hra_A           93 KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF--QNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GA  169 (201)
T ss_dssp             HHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC--CCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT-TC
T ss_pred             hccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC--CCCCCCCHHHHHHHhccchhhHHHHHHHHHHC-CC
Confidence            6588899999999999999999999999999999998 55444  55889999999999887     9999999998 89


Q ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q psy2733         234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRD  265 (644)
Q Consensus       234 ~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~g  265 (644)
                      +++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       170 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          170 DQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.2e-32  Score=278.44  Aligned_cols=221  Identities=18%  Similarity=0.185  Sum_probs=172.5

Q ss_pred             CCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCccccccccc
Q psy2733          22 RGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIP  100 (644)
Q Consensus        22 ~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (644)
                      .|+..+..|..|+||||+|+..|+.++|+.| ..                                              
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------------------   35 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPF----------------------------------------------   35 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHH----------------------------------------------
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHH----------------------------------------------
Confidence            4667778899999999999999999999875 22                                              


Q ss_pred             ccccCCCCCCcccchhhHHHHHHHHHhCCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHhcCCCCC-------c
Q psy2733         101 RMNEDMLDTPSAECSGILIKQDFVLLRNGCNVN----IQDNNQDTPMHDAVAK---GFEEIQLLLLSHPEVN-------L  166 (644)
Q Consensus       101 ~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n----~~d~~G~TpL~~A~~~---g~~~iv~~Ll~~~~~~-------~  166 (644)
                                              +.+.+++++    ..|..|+||||+|+..   |+.+++++|++ .|++       +
T Consensus        36 ------------------------~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~-~ga~~~~~~~~i   90 (273)
T 2pnn_A           36 ------------------------LQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQFV   90 (273)
T ss_dssp             ------------------------HHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH-HHHHTTCHHHHH
T ss_pred             ------------------------HhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH-hhccccchhHHh
Confidence                                    334555555    3578999999999987   99999999999 4543       2


Q ss_pred             ----cccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcC------------CCCCchHHHHHHhcCcHHHHHHHHHh
Q psy2733         167 ----YLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPK------------TSDGFTPLHVACFNDHIEIVELLVEK  230 (644)
Q Consensus       167 ----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~------------d~~g~T~Lh~A~~~g~~~~v~~Ll~~  230 (644)
                          ...|..|.||||+|+..|+.+++++|++.++++.....            +..|.||||+|+..|+.+++++|++.
T Consensus        91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (273)
T 2pnn_A           91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN  170 (273)
T ss_dssp             TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred             hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                22567899999999999999999999999988766322            12699999999999999999999993


Q ss_pred             --cCCCcccCCCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCC-------cccCCCCcHHHHHHHcCCccccc
Q psy2733         231 --YKVNINALDLKKRTPLMAAVGQGQ---------TSVINYLMLRDVALD-------IQDIDGNGLLHFLFIKKNFYKTP  292 (644)
Q Consensus       231 --~g~~in~~d~~G~TpL~~Aa~~g~---------~~iv~~Ll~~gadvn-------~~d~~G~T~Lh~A~~~~~~~~~~  292 (644)
                        .|++++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..++     
T Consensus       171 ~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~-----  245 (273)
T 2pnn_A          171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK-----  245 (273)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC-----
T ss_pred             ccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh-----
Confidence              389999999999999999999998         899999999999997       489999999999999999     


Q ss_pred             ccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCC-CCCCCCCCCCCcch
Q psy2733         293 ITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGA-PLSLENNNRQKPLD  344 (644)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Ga-di~~~n~~G~TpL~  344 (644)
                                                .+++++|+++|| |+......+.+|-+
T Consensus       246 --------------------------~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          246 --------------------------IGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             --------------------------HHHHHHHHHHHTC--------------
T ss_pred             --------------------------HHHHHHHHHCCCCCchhhhhhhhhccC
Confidence                                      789999999999 88888888777753

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.4e-30  Score=252.10  Aligned_cols=170  Identities=22%  Similarity=0.228  Sum_probs=156.2

Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCC
Q psy2733         127 RNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTS  206 (644)
Q Consensus       127 ~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~  206 (644)
                      ..+.+++..|.+|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.+..... ..+.
T Consensus        27 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~  104 (201)
T 3hra_A           27 DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN-KHNR  104 (201)
T ss_dssp             CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT-CCCT
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccc-cccC
Confidence            3445888899999999999999999999999999 7999999999999999999999999999999965543322 2558


Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCcccCCCCcHHHH
Q psy2733         207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ-----TSVINYLMLRDVALDIQDIDGNGLLHF  281 (644)
Q Consensus       207 ~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~-----~~iv~~Ll~~gadvn~~d~~G~T~Lh~  281 (644)
                      .|.||||+|+..|+.+++++|++.++++++.+|..|.||||+|+..++     .+++++|+++|++++.+|..|+||||+
T Consensus       105 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  184 (201)
T 3hra_A          105 YGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY  184 (201)
T ss_dssp             TSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHH
Confidence            899999999999999999999999559999999999999999999998     999999999999999999999999999


Q ss_pred             HHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcC
Q psy2733         282 LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHG  329 (644)
Q Consensus       282 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~G  329 (644)
                      |+..++                               .+++++|+++|
T Consensus       185 A~~~~~-------------------------------~~~~~~Ll~~G  201 (201)
T 3hra_A          185 ANQKGY-------------------------------TEISKILAQYN  201 (201)
T ss_dssp             HHHHTC-------------------------------HHHHHHHHTCC
T ss_pred             HHHcCC-------------------------------HhHHHHHHhcC
Confidence            999999                               77999999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=3.4e-32  Score=285.14  Aligned_cols=200  Identities=19%  Similarity=0.128  Sum_probs=169.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           3 LLHILAYQGCVEELNILLARGACVYY-PDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         3 pLh~Aa~~G~~e~vk~LL~~Ga~~n~-~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      .+|+|+..+..+++++|++.|+++|. +|..|+||||+|+..|+.++|++                              
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~------------------------------  149 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKH------------------------------  149 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHH------------------------------
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHH------------------------------
Confidence            45888888889999999999999999 89999999999999999999987                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHH
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGF---EEIQLLL  158 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~---~~iv~~L  158 (644)
                                                                 |+++|+++|.+|..|+||||+|+..|+   .++++.|
T Consensus       150 -------------------------------------------Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~l  186 (327)
T 1sw6_A          150 -------------------------------------------LVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL  186 (327)
T ss_dssp             -------------------------------------------HHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             -------------------------------------------HHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence                                                       888999999999999999999999998   5677777


Q ss_pred             hcCCCCCccccCCCCCcHHHHHHH----cCCHHHHHHHHHh--------------------cCCccCCcCCCCCchHHHH
Q psy2733         159 LSHPEVNLYLENSKGFNILNYAVL----RGNMKVTEKILAL--------------------NRNLATVPKTSDGFTPLHV  214 (644)
Q Consensus       159 l~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~~d~~g~T~Lh~  214 (644)
                      ++....+++.++..|.||||+|+.    .|+.++++.|++.                    ++++..  .+..|.||||+
T Consensus       187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~--~~~~g~t~L~~  264 (327)
T 1sw6_A          187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND--KNGERKDSILE  264 (327)
T ss_dssp             HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------------CHHHH
T ss_pred             HHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc--ccccCCChhHH
Confidence            764336799999999999999999    8999999999987                    444433  56889999999


Q ss_pred             HHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcC
Q psy2733         215 ACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKK  286 (644)
Q Consensus       215 A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~  286 (644)
                      |+.      +++|++.   +++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus       265 a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          265 NLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            996      8999987   68999999999999999999999999999999999999999999999998654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.3e-31  Score=270.05  Aligned_cols=201  Identities=18%  Similarity=0.179  Sum_probs=170.5

Q ss_pred             CcHHHHHHHcCCHH----HHHHHHHCCCCCcc----cCCCCCcHHHHHHhc---CCHHHHHHH-hhccCCCccchhhhhh
Q psy2733           1 KTLLHILAYQGCVE----ELNILLARGACVYY----PDDAGDTALHYAAFG---NKPDAIQIN-SHVSGANRSRKHIYKE   68 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e----~vk~LL~~Ga~~n~----~d~~G~TpLh~Aa~~---g~~eiv~lL-~~~a~~~~~~~~~~~~   68 (644)
                      +||||+||..|+.+    ++++|++.|++++.    +|..|+||||+|+..   |+.+++++| ..+++++....     
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-----   77 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP-----   77 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC-----
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh-----
Confidence            58999999999997    66778889999998    899999999999999   999999999 77777654100     


Q ss_pred             hhhccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy2733          69 RHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVA  148 (644)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~  148 (644)
                                                                              ++.  ......|..|.||||+|+.
T Consensus        78 --------------------------------------------------------~~~--~~~~~~d~~g~t~L~~A~~   99 (256)
T 2etb_A           78 --------------------------------------------------------LVN--AQCTDEFYQGHSALHIAIE   99 (256)
T ss_dssp             --------------------------------------------------------GGG--CCCCSTTTTTCCHHHHHHH
T ss_pred             --------------------------------------------------------hcc--cccccccccCCCHHHHHHH
Confidence                                                                    111  1223456789999999999


Q ss_pred             cCCHHHHHHHhcCCCCCccccCCC-------------CCcHHHHHHHcCCHHHHHHHHH---hcCCccCCcCCCCCchHH
Q psy2733         149 KGFEEIQLLLLSHPEVNLYLENSK-------------GFNILNYAVLRGNMKVTEKILA---LNRNLATVPKTSDGFTPL  212 (644)
Q Consensus       149 ~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~d~~g~T~L  212 (644)
                      .|+.+++++|++ .|++++..+..             |.||||+|+..|+.+++++|++   .++++..  .|..|+|||
T Consensus       100 ~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~--~d~~g~TpL  176 (256)
T 2etb_A          100 KRSLQCVKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA--TDSLGNTVL  176 (256)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC--CCTTSCCHH
T ss_pred             cCCHHHHHHHHH-cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc--cCCCCCCHH
Confidence            999999999999 79999999886             8999999999999999999999   7777655  567899999


Q ss_pred             HHHHh--cCcHH-------HHHHHHHhcCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Q psy2733         213 HVACF--NDHIE-------IVELLVEKYKVNI-------NALDLKKRTPLMAAVGQGQTSVINYLMLRDVAL  268 (644)
Q Consensus       213 h~A~~--~g~~~-------~v~~Ll~~~g~~i-------n~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadv  268 (644)
                      |+|+.  .++.+       ++++|++. |+++       +.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       177 h~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          177 HALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            99998  77877       89999988 7888       888999999999999999999999999887664

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.4e-30  Score=245.87  Aligned_cols=159  Identities=29%  Similarity=0.385  Sum_probs=147.7

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCc
Q psy2733         141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH  220 (644)
Q Consensus       141 TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~  220 (644)
                      ++|+.|++.|+.++|+.|++ .|++++.+|..|.||||+|+..++.++++.|++.++++..  .|..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~--~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh--hccCCCCHHHHHHHcCC
Confidence            57999999999999999999 7999999999999999999999999999999999988766  66899999999999999


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCch
Q psy2733         221 IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVP  300 (644)
Q Consensus       221 ~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~  300 (644)
                      .+++++|++. |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..++             
T Consensus        83 ~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~-------------  148 (169)
T 4gpm_A           83 KEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN-------------  148 (169)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-------------
T ss_pred             HHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC-------------
Confidence            9999999998 89999999999999999999999999999999999999999999999999999998             


Q ss_pred             hHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCC
Q psy2733         301 IYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSL  334 (644)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~  334 (644)
                                        .+++++|+++||+++.
T Consensus       149 ------------------~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          149 ------------------EEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             ------------------HHHHHHHHTC------
T ss_pred             ------------------HHHHHHHHHCCCCcCC
Confidence                              7799999999999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2e-31  Score=271.31  Aligned_cols=213  Identities=16%  Similarity=0.189  Sum_probs=173.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHH----CCCCCc----ccCCCCCcHHHHHHhc---CCHHHHHHH-hhccCCCccchhhhhh
Q psy2733           1 KTLLHILAYQGCVEELNILLA----RGACVY----YPDDAGDTALHYAAFG---NKPDAIQIN-SHVSGANRSRKHIYKE   68 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~----~Ga~~n----~~d~~G~TpLh~Aa~~---g~~eiv~lL-~~~a~~~~~~~~~~~~   68 (644)
                      +||||+||..|+.++|+.|++    .+++++    .+|..|+||||+|+..   |+.++|++| ..+++.+.        
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~--------   85 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS--------   85 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC--------
T ss_pred             chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc--------
Confidence            489999999999999998887    566665    4588999999999987   999999999 77776543        


Q ss_pred             hhhccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy2733          69 RHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVA  148 (644)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~  148 (644)
                                                                           ++.++..  .....|..|+||||+|+.
T Consensus        86 -----------------------------------------------------~~~~i~~--~~~~~d~~g~tpL~~A~~  110 (273)
T 2pnn_A           86 -----------------------------------------------------LKQFVNA--SYTDSYYKGQTALHIAIE  110 (273)
T ss_dssp             -----------------------------------------------------HHHHHTC--CCCSTTTTTCCHHHHHHH
T ss_pred             -----------------------------------------------------hhHHhhc--ccccccCCCCCHHHHHHH
Confidence                                                                 1122322  233456789999999999


Q ss_pred             cCCHHHHHHHhcCCCCCccccCC--------------CCCcHHHHHHHcCCHHHHHHHHH---hcCCccCCcCCCCCchH
Q psy2733         149 KGFEEIQLLLLSHPEVNLYLENS--------------KGFNILNYAVLRGNMKVTEKILA---LNRNLATVPKTSDGFTP  211 (644)
Q Consensus       149 ~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~d~~g~T~  211 (644)
                      .|+.+++++|++ .|++++..+.              .|.||||+|+..|+.+++++|++   .++++..  .|..|+||
T Consensus       111 ~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~--~d~~g~tp  187 (273)
T 2pnn_A          111 RRNMTLVTLLVE-NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA--RDSVGNTV  187 (273)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC--CCTTSCCH
T ss_pred             cCCHHHHHHHHH-CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee--eCCCCCcH
Confidence            999999999999 7999999987              79999999999999999999999   7877765  66899999


Q ss_pred             HHHHHhcCc---------HHHHHHHHHhcCCCcc-------cCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCcccCC
Q psy2733         212 LHVACFNDH---------IEIVELLVEKYKVNIN-------ALDLKKRTPLMAAVGQGQTSVINYLMLRDV-ALDIQDID  274 (644)
Q Consensus       212 Lh~A~~~g~---------~~~v~~Ll~~~g~~in-------~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~ga-dvn~~d~~  274 (644)
                      ||+|+..|+         .+++++|++. |++++       .+|..|+||||+|+..|+.+++++|+++|+ |+......
T Consensus       188 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~  266 (273)
T 2pnn_A          188 LHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAA  266 (273)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhh
Confidence            999999888         7999999998 78886       589999999999999999999999999999 88877777


Q ss_pred             CCcHHH
Q psy2733         275 GNGLLH  280 (644)
Q Consensus       275 G~T~Lh  280 (644)
                      +.+|-+
T Consensus       267 ~~~~~~  272 (273)
T 2pnn_A          267 AHHHHH  272 (273)
T ss_dssp             ------
T ss_pred             hhhccC
Confidence            776643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.6e-30  Score=245.57  Aligned_cols=159  Identities=33%  Similarity=0.470  Sum_probs=119.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      ++|+.||+.|+.++|++||+.|+++|.+|.+|+||||+|+..++.+++++                              
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~------------------------------   55 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKL------------------------------   55 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH------------------------------
Confidence            46888999999999999999999999999999999999998888888876                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |++.|++++.+|.+|+||||+|+..|+.+++++|++ 
T Consensus        56 -------------------------------------------ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-   91 (169)
T 4gpm_A           56 -------------------------------------------LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-   91 (169)
T ss_dssp             -------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             -------------------------------------------HHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHH-
Confidence                                                       677788888888888888888888888888888888 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCC
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK  241 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~  241 (644)
                      .|++++.+|..|+                                   ||||+|+..|+.+++++|++. |++++.+|..
T Consensus        92 ~gadvn~~d~~G~-----------------------------------TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~  135 (169)
T 4gpm_A           92 KGADVNAKDSDGR-----------------------------------TPLHHAAENGHKEVVKLLISK-GADVNTSDSD  135 (169)
T ss_dssp             TTCCTTCCCTTSC-----------------------------------CHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             CcCCCCCCCCCCC-----------------------------------CHHHHHHHcCCHHHHHHHHHc-CCCccccCCC
Confidence            6777766655555                                   455555555555566666655 5667777777


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLRDVALDI  270 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~  270 (644)
                      |+||||+|+..|+.+++++|+++||+++-
T Consensus       136 G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          136 GRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            77777777777777777777777777643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.8e-31  Score=268.99  Aligned_cols=176  Identities=18%  Similarity=0.204  Sum_probs=158.5

Q ss_pred             HHHHhCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHhcCCCCCccc-----------cCCCCCcHHHHHHHcC
Q psy2733         123 FVLLRNGCNVNI----QDNNQDTPMHDAVAK---GFEEIQLLLLSHPEVNLYL-----------ENSKGFNILNYAVLRG  184 (644)
Q Consensus       123 ~~Ll~~gad~n~----~d~~G~TpL~~A~~~---g~~~iv~~Ll~~~~~~~~~-----------~d~~g~tpL~~A~~~g  184 (644)
                      ++|++.|++++.    .|..|+||||+|+..   |+.+++++|++ .|++++.           .|..|.||||+|+..|
T Consensus        23 ~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g  101 (256)
T 2etb_A           23 EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR  101 (256)
T ss_dssp             HHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT
T ss_pred             HHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhcccccccccccCCCHHHHHHHcC
Confidence            347788999998    899999999999999   99999999999 5666553           3367999999999999


Q ss_pred             CHHHHHHHHHhcCCccCCcCCCC-------------CchHHHHHHhcCcHHHHHHHHHh--cCCCcccCCCCCCCHHHHH
Q psy2733         185 NMKVTEKILALNRNLATVPKTSD-------------GFTPLHVACFNDHIEIVELLVEK--YKVNINALDLKKRTPLMAA  249 (644)
Q Consensus       185 ~~~~v~~Ll~~~~~~~~~~~d~~-------------g~T~Lh~A~~~g~~~~v~~Ll~~--~g~~in~~d~~G~TpL~~A  249 (644)
                      +.+++++|++.++++..  .+..             |.||||+|+..|+.+++++|++.  .|++++.+|..|+||||+|
T Consensus       102 ~~~~v~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A  179 (256)
T 2etb_A          102 SLQCVKLLVENGADVHL--RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL  179 (256)
T ss_dssp             CHHHHHHHHHTTCCTTC--CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHH
T ss_pred             CHHHHHHHHHcCCCCCc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHH
Confidence            99999999999988766  3333             99999999999999999999993  3899999999999999999


Q ss_pred             HH--cCCHH-------HHHHHHHCCCCC-------CcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCC
Q psy2733         250 VG--QGQTS-------VINYLMLRDVAL-------DIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSN  313 (644)
Q Consensus       250 a~--~g~~~-------iv~~Ll~~gadv-------n~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (644)
                      +.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..++                          
T Consensus       180 ~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--------------------------  233 (256)
T 2etb_A          180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK--------------------------  233 (256)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC--------------------------
T ss_pred             HHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC--------------------------
Confidence            99  88888       999999999999       9999999999999999999                          


Q ss_pred             ccchHHHHHHHHHHcCCCC
Q psy2733         314 EHGILLAVFLFLVKHGAPL  332 (644)
Q Consensus       314 ~~~~~~~iv~~Ll~~Gadi  332 (644)
                           .+++++|+++|++.
T Consensus       234 -----~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          234 -----IEIFRHILQREFSG  247 (256)
T ss_dssp             -----HHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhCCCCC
Confidence                 77999999998754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=3.9e-31  Score=272.36  Aligned_cols=201  Identities=23%  Similarity=0.270  Sum_probs=178.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++                             
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~-----------------------------  124 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY-----------------------------  124 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH-----------------------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH-----------------------------
Confidence            599999999999999999999999999999999999999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++..|..|.||||+|+..++.++++.++.
T Consensus       125 --------------------------------------------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B          125 --------------------------------------------LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             --------------------------------------------HHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence                                                        788888899999999999999999999999999988


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCC
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL  240 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~  240 (644)
                      ..+.+++..+..+.++++        ..++.++..+..... ..+..|.||||+|+..|+.+++++|++. |++++.+|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~  230 (299)
T 1s70_B          161 RQGVDIEAARKEEERIML--------RDARQWLNSGHINDV-RHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDY  230 (299)
T ss_dssp             HHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCC-CCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCT
T ss_pred             hcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchh-hhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCC
Confidence            667776655544444443        334556666654433 3457899999999999999999999998 899999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHH
Q psy2733         241 KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI  284 (644)
Q Consensus       241 ~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~  284 (644)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|..
T Consensus       231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999964

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.9e-30  Score=259.60  Aligned_cols=202  Identities=18%  Similarity=0.213  Sum_probs=172.2

Q ss_pred             CcHHHHHHHcCCHHHH----HHHHHCCCCCcccC----CCCCcHHHHHH---hcCCHHHHHHH-hhccCCCccchhhhhh
Q psy2733           1 KTLLHILAYQGCVEEL----NILLARGACVYYPD----DAGDTALHYAA---FGNKPDAIQIN-SHVSGANRSRKHIYKE   68 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~v----k~LL~~Ga~~n~~d----~~G~TpLh~Aa---~~g~~eiv~lL-~~~a~~~~~~~~~~~~   68 (644)
                      +|+||.||+.|+.+.+    ++|++.|++++..+    ..|+||||+|+   ..|+.+++++| ..+++....       
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~-------   78 (260)
T 3jxi_A            6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM-------   78 (260)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH-------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch-------
Confidence            5899999999999954    45555999998776    77999999999   77999999999 777665430       


Q ss_pred             hhhccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q psy2733          69 RHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVA  148 (644)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~  148 (644)
                                                                            ..++  ..+++..|..|+||||+|+.
T Consensus        79 ------------------------------------------------------~~~~--~~~~~~~d~~g~t~L~~A~~  102 (260)
T 3jxi_A           79 ------------------------------------------------------REFI--NSPFRDVYYRGQTALHIAIE  102 (260)
T ss_dssp             ------------------------------------------------------HHHH--TCCBCCSSEESBCHHHHHHH
T ss_pred             ------------------------------------------------------Hhhh--cccccccccCCCCHHHHHHH
Confidence                                                                  0111  23455567789999999999


Q ss_pred             cCCHHHHHHHhcCCCCCccccC--------------CCCCcHHHHHHHcCCHHHHHHHHH---hcCCccCCcCCCCCchH
Q psy2733         149 KGFEEIQLLLLSHPEVNLYLEN--------------SKGFNILNYAVLRGNMKVTEKILA---LNRNLATVPKTSDGFTP  211 (644)
Q Consensus       149 ~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~d~~g~T~  211 (644)
                      .|+.+++++|++ .|++++..+              ..|.||||+|+..|+.+++++|++   .++++..  .|..|+||
T Consensus       103 ~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~--~d~~g~Tp  179 (260)
T 3jxi_A          103 RRCKHYVELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR--QDSRGNTV  179 (260)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC--CCTTSCCH
T ss_pred             cCCHHHHHHHHh-CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc--cCCCCCcH
Confidence            999999999999 799999998              689999999999999999999999   7777655  66899999


Q ss_pred             HHHHHhcCc---------HHHHHHHHHhcCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy2733         212 LHVACFNDH---------IEIVELLVEKYKVNI-------NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD  269 (644)
Q Consensus       212 Lh~A~~~g~---------~~~v~~Ll~~~g~~i-------n~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn  269 (644)
                      ||+|+..++         .+++++|++. |+++       +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       180 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          180 LHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            999998777         7899999998 7888       6799999999999999999999999999887653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4.3e-30  Score=259.32  Aligned_cols=176  Identities=19%  Similarity=0.236  Sum_probs=154.5

Q ss_pred             HHHhCCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHhcCCCC-----------CccccCCCCCcHHHHHHHcCC
Q psy2733         124 VLLRNGCNVNIQD----NNQDTPMHDAV---AKGFEEIQLLLLSHPEV-----------NLYLENSKGFNILNYAVLRGN  185 (644)
Q Consensus       124 ~Ll~~gad~n~~d----~~G~TpL~~A~---~~g~~~iv~~Ll~~~~~-----------~~~~~d~~g~tpL~~A~~~g~  185 (644)
                      .|++.|++++..+    ..|+||||+|+   ..|+.+++++|++ .++           ..+..|..|.||||+|+..|+
T Consensus        27 ~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~  105 (260)
T 3jxi_A           27 FLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC  105 (260)
T ss_dssp             HHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH-HHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTC
T ss_pred             HHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH-hcccccchHhhhcccccccccCCCCHHHHHHHcCC
Confidence            3566777777555    67999999999   7799999999999 443           344556689999999999999


Q ss_pred             HHHHHHHHHhcCCccCCcCC------------CCCchHHHHHHhcCcHHHHHHHHH---hcCCCcccCCCCCCCHHHHHH
Q psy2733         186 MKVTEKILALNRNLATVPKT------------SDGFTPLHVACFNDHIEIVELLVE---KYKVNINALDLKKRTPLMAAV  250 (644)
Q Consensus       186 ~~~v~~Ll~~~~~~~~~~~d------------~~g~T~Lh~A~~~g~~~~v~~Ll~---~~g~~in~~d~~G~TpL~~Aa  250 (644)
                      .+++++|++.++++.....+            ..|+||||+|+..|+.+++++|++   . |++++.+|..|+||||+|+
T Consensus       106 ~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-ga~~~~~d~~g~TpLh~A~  184 (260)
T 3jxi_A          106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK-QADLRRQDSRGNTVLHALV  184 (260)
T ss_dssp             HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC-CCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc-CCCCcccCCCCCcHHHHHH
Confidence            99999999999887663210            479999999999999999999999   6 8999999999999999999


Q ss_pred             HcCC---------HHHHHHHHHCCCCC-------CcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCc
Q psy2733         251 GQGQ---------TSVINYLMLRDVAL-------DIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNE  314 (644)
Q Consensus       251 ~~g~---------~~iv~~Ll~~gadv-------n~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (644)
                      ..|+         .+++++|+++|+++       +.+|..|+||||+|+..++                           
T Consensus       185 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~---------------------------  237 (260)
T 3jxi_A          185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK---------------------------  237 (260)
T ss_dssp             HHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC---------------------------
T ss_pred             HhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC---------------------------
Confidence            9888         79999999999999       7799999999999999999                           


Q ss_pred             cchHHHHHHHHHHcCCCC
Q psy2733         315 HGILLAVFLFLVKHGAPL  332 (644)
Q Consensus       315 ~~~~~~iv~~Ll~~Gadi  332 (644)
                          .+++++|+++|++.
T Consensus       238 ----~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          238 ----IGIFQHIIRREIAD  251 (260)
T ss_dssp             ----HHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhCCCc
Confidence                78999999999764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2.2e-29  Score=257.23  Aligned_cols=189  Identities=26%  Similarity=0.295  Sum_probs=169.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC--CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGAC--VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKV   78 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~--~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~   78 (644)
                      ++++|.|+..|+++.++.+++.+.+  +|.+|.+|+||||+|+..|+.++|++                           
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~---------------------------  129 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQ---------------------------  129 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHH---------------------------
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHH---------------------------
Confidence            5788999999999999999988776  88899999999999999999999987                           


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCC-CCCCCCCCCCcHHHHHH-----HcCCH
Q psy2733          79 QRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGC-NVNIQDNNQDTPMHDAV-----AKGFE  152 (644)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~ga-d~n~~d~~G~TpL~~A~-----~~g~~  152 (644)
                                                                    |++.|+ +++..|..|+||||+|+     ..++.
T Consensus       130 ----------------------------------------------Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~  163 (276)
T 4hbd_A          130 ----------------------------------------------LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI  163 (276)
T ss_dssp             ----------------------------------------------HHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHH
T ss_pred             ----------------------------------------------HHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhH
Confidence                                                          777776 88888999999999999     66789


Q ss_pred             HHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcC
Q psy2733         153 EIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK  232 (644)
Q Consensus       153 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g  232 (644)
                      +++++|++ .|...+..+..|.||||+|+..|+.+++++|++.|++++.  .|..|+||||+|+..|+.+++++|++..|
T Consensus       164 ~~v~~Ll~-~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~--~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  240 (276)
T 4hbd_A          164 ETVLQLFR-LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV--QDDDGSTALMCACEHGHKEIAGLLLAVPS  240 (276)
T ss_dssp             HHHHHHHH-HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHTSTT
T ss_pred             HHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence            99999999 6888888888999999999999999999999999988766  56889999999999999999999998448


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q psy2733         233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRD  265 (644)
Q Consensus       233 ~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~g  265 (644)
                      ++++.+|..|.||||+|+..|+.+++++|++++
T Consensus       241 ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          241 CDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999999999999999763

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=3.5e-28  Score=229.44  Aligned_cols=170  Identities=21%  Similarity=0.228  Sum_probs=152.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhc
Q psy2733         139 QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFN  218 (644)
Q Consensus       139 G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~  218 (644)
                      +.||||+|+..|+.++++.|++..+..++..+..|.||||+|+..|+.+++++|++.++++..  .+..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh--hcccCCCHHHHHHHC
Confidence            568999999999999999999954444889999999999999999999999999999988765  567899999999999


Q ss_pred             CcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCC
Q psy2733         219 DHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKS  298 (644)
Q Consensus       219 g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~  298 (644)
                      |+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++           
T Consensus        80 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~-----------  147 (172)
T 3v30_A           80 GYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY-----------  147 (172)
T ss_dssp             TCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-----------
T ss_pred             CCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc-----------
Confidence            999999999998 89999999999999999999999999999999999999999999999999999998           


Q ss_pred             chhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCc
Q psy2733         299 VPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKP  342 (644)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~Tp  342 (644)
                                          .+++++|+++|+++..++..|.||
T Consensus       148 --------------------~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          148 --------------------RKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             --------------------HHHHHHHHHHHHHHSCC-------
T ss_pred             --------------------HHHHHHHHHHHHHHhcccCCCCCC
Confidence                                779999999999999999999887

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=9.9e-28  Score=226.32  Aligned_cols=168  Identities=25%  Similarity=0.299  Sum_probs=119.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC-CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~-~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +||||+||..|+.+++++|++.|.+ ++.+|..|+||||+|+..|+.+++++                            
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----------------------------   54 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRF----------------------------   54 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHH----------------------------
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHH----------------------------
Confidence            4899999999999999999999887 78889999999999999999999887                            


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                   |+++|++++..|..|.||||+|+..|+.+++++|+
T Consensus        55 ---------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   89 (172)
T 3v30_A           55 ---------------------------------------------LLEWGADPHILAKERESALSLASTGGYTDIVGLLL   89 (172)
T ss_dssp             ---------------------------------------------HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------------------------------HHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHH
Confidence                                                         66777888888888999999999999999999998


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD  239 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d  239 (644)
                      + .+++++..+..|.||||+|+..|+.+++++|++.                                    |++++.+|
T Consensus        90 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------------------------------ga~~~~~~  132 (172)
T 3v30_A           90 E-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR------------------------------------GADLTTEA  132 (172)
T ss_dssp             T-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------------------------------------TCCTTCCC
T ss_pred             H-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------------------------------------CCCccccC
Confidence            8 6777776666555555555555555555555444                                    45555555


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcH
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL  278 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~  278 (644)
                      ..|.||||+|+..|+.+++++|+++|+++..++..|.||
T Consensus       133 ~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          133 DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             CCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            555555555555555555555555555555555555444

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.1e-27  Score=230.43  Aligned_cols=163  Identities=24%  Similarity=0.268  Sum_probs=154.8

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchH
Q psy2733         132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP  211 (644)
Q Consensus       132 ~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~  211 (644)
                      +|.+|..|+||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.++++..  .+..|+||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHH-hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcH
Confidence            46788999999999999999999999999 6999999999999999999999999999999999987765  56789999


Q ss_pred             HHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccc
Q psy2733         212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKT  291 (644)
Q Consensus       212 Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~  291 (644)
                      ||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++    
T Consensus       105 L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----  179 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR----  179 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC----
T ss_pred             HHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCc----
Confidence            9999999999999999998 89999999999999999999999999999999999999999999999999999998    


Q ss_pred             cccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcC
Q psy2733         292 PITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHG  329 (644)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~G  329 (644)
                                                 .+++++|+++|
T Consensus       180 ---------------------------~~~v~~Ll~~~  190 (192)
T 2rfm_A          180 ---------------------------QEVIKIFTEVR  190 (192)
T ss_dssp             ---------------------------HHHHHHHHHHH
T ss_pred             ---------------------------HHHHHHHHhcc
Confidence                                       77999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=2.8e-28  Score=249.02  Aligned_cols=163  Identities=21%  Similarity=0.303  Sum_probs=153.0

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCC-CccccCCCCCcHHHHHH-----HcCCHHHHHHHHHhcCCccCCcCC
Q psy2733         132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEV-NLYLENSKGFNILNYAV-----LRGNMKVTEKILALNRNLATVPKT  205 (644)
Q Consensus       132 ~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~d  205 (644)
                      +|..|.+|+||||+|+..|+.+++++|++ .|+ +++..+..|.||||+|+     ..++.++++.|++.+.....  .+
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~--~~  180 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLD-SGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAK--AS  180 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCC--CT
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccc--cC
Confidence            67889999999999999999999999999 676 99999999999999999     67899999999999966544  55


Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCcHHHHHHH
Q psy2733         206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML-RDVALDIQDIDGNGLLHFLFI  284 (644)
Q Consensus       206 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~-~gadvn~~d~~G~T~Lh~A~~  284 (644)
                      ..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~  259 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD  259 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence            7899999999999999999999998 89999999999999999999999999999999 899999999999999999999


Q ss_pred             cCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcC
Q psy2733         285 KKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHG  329 (644)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~G  329 (644)
                      .++                               .+++++|++++
T Consensus       260 ~g~-------------------------------~~iv~~Ll~~~  273 (276)
T 4hbd_A          260 AGQ-------------------------------SEIASMLYSRM  273 (276)
T ss_dssp             HTC-------------------------------HHHHHHHHHHC
T ss_pred             cCC-------------------------------HHHHHHHHhcc
Confidence            999                               77999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2.7e-27  Score=227.64  Aligned_cols=163  Identities=26%  Similarity=0.220  Sum_probs=152.7

Q ss_pred             CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccC
Q psy2733          26 VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED  105 (644)
Q Consensus        26 ~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (644)
                      +|.+|..|+||||+|+..|+.+++++                                                      
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~------------------------------------------------------   53 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDK------------------------------------------------------   53 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHH------------------------------------------------------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHH------------------------------------------------------
Confidence            56789999999999999999999987                                                      


Q ss_pred             CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCC
Q psy2733         106 MLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN  185 (644)
Q Consensus       106 ~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  185 (644)
                                         |++.|++++..|..|+||||+|+..|+.+++++|++ .+++++..+..|.||||+|+..|+
T Consensus        54 -------------------Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~  113 (192)
T 2rfm_A           54 -------------------LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGY  113 (192)
T ss_dssp             -------------------HHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             -------------------HHHhccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCC
Confidence                               666677778889999999999999999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q psy2733         186 MKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD  265 (644)
Q Consensus       186 ~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~g  265 (644)
                      .+++++|++.++++..  .|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       114 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          114 SEMSYFLLEHGANVND--RNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHTTCCSSC--CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999988765  568899999999999999999999998 8999999999999999999999999999999764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4.3e-27  Score=219.35  Aligned_cols=156  Identities=24%  Similarity=0.301  Sum_probs=107.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      ||||+|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++                              
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~------------------------------   55 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARR------------------------------   55 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHH------------------------------
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHH------------------------------
Confidence            67888888888888888888888888888888888888877 77777776                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |+++|++++..|..|+||||+|+..|+.+++++|++ 
T Consensus        56 -------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-   91 (162)
T 1ihb_A           56 -------------------------------------------LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-   91 (162)
T ss_dssp             -------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             -------------------------------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence                                                       666677777777777778777777777777777777 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCC
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK  241 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~  241 (644)
                      .|++++.++..|.||||+|+..|+.+++++|++.+++.                                   ++.+|..
T Consensus        92 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----------------------------------~~~~~~~  136 (162)
T 1ihb_A           92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----------------------------------VGHRNHK  136 (162)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC-----------------------------------TTCCCTT
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC-----------------------------------CCCcCCC
Confidence            56666666555555555555555555555554444332                                   4556666


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLRDVA  267 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~gad  267 (644)
                      |.||||+|+..|+.+++++|+++|+|
T Consensus       137 g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          137 GDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            66666666666666666666666654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4.9e-27  Score=219.00  Aligned_cols=158  Identities=22%  Similarity=0.296  Sum_probs=148.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHh
Q psy2733         138 NQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACF  217 (644)
Q Consensus       138 ~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~  217 (644)
                      ...||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+. |+.+++++|++.++++..  .+..|+||||+|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL--KDRTGFAVIHDAAR   79 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHH
Confidence            45699999999999999999999 799999999999999999999 999999999999987765  56889999999999


Q ss_pred             cCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCcHHHHHHHcCCccccccccc
Q psy2733         218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA-LDIQDIDGNGLLHFLFIKKNFYKTPITRE  296 (644)
Q Consensus       218 ~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gad-vn~~d~~G~T~Lh~A~~~~~~~~~~~~~~  296 (644)
                      .|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++         
T Consensus        80 ~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~---------  149 (162)
T 1ihb_A           80 AGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR---------  149 (162)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC---------
T ss_pred             cCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC---------
Confidence            9999999999998 899999999999999999999999999999999998 69999999999999999998         


Q ss_pred             CCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCC
Q psy2733         297 KSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAP  331 (644)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gad  331 (644)
                                            .+++++|+++|||
T Consensus       150 ----------------------~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          150 ----------------------NEVVSLMQANGAG  162 (162)
T ss_dssp             ----------------------HHHHHHHHHTC--
T ss_pred             ----------------------HHHHHHHHHhCCC
Confidence                                  7799999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=6.3e-27  Score=219.68  Aligned_cols=160  Identities=20%  Similarity=0.244  Sum_probs=151.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHh
Q psy2733         138 NQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACF  217 (644)
Q Consensus       138 ~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~  217 (644)
                      .|.||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.++++..  .+..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHH
Confidence            58899999999999999999999 6899999999999999999999999999999999887765  56789999999999


Q ss_pred             cCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccC
Q psy2733         218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREK  297 (644)
Q Consensus       218 ~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~  297 (644)
                      .|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++          
T Consensus        79 ~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----------  147 (167)
T 3v31_A           79 KGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY----------  147 (167)
T ss_dssp             HTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----------
T ss_pred             cCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc----------
Confidence            9999999999998 89999999999999999999999999999999999999999999999999999999          


Q ss_pred             CchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCC
Q psy2733         298 SVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPL  332 (644)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi  332 (644)
                                           .+++++|+++++++
T Consensus       148 ---------------------~~~~~~L~~~~~~~  161 (167)
T 3v31_A          148 ---------------------RSVQQVIESHLLKL  161 (167)
T ss_dssp             ---------------------HHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHH
Confidence                                 77999999988664

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5.1e-27  Score=223.17  Aligned_cols=169  Identities=22%  Similarity=0.204  Sum_probs=155.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHH
Q psy2733         137 NNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVAC  216 (644)
Q Consensus       137 ~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~  216 (644)
                      .++.++||.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|++.++++..  .+..|+||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCCHHHHHH
Confidence            46789999999999999999999977888999999999999999999999999999999988766  5678999999999


Q ss_pred             hcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCccccccccc
Q psy2733         217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE  296 (644)
Q Consensus       217 ~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~  296 (644)
                      ..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++         
T Consensus        81 ~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~---------  150 (179)
T 3f6q_A           81 SHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR---------  150 (179)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHH---------
T ss_pred             HcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHH---------
Confidence            99999999999998 89999999999999999999999999999999999999999999999999988766         


Q ss_pred             CCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCC
Q psy2733         297 KSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNR  339 (644)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G  339 (644)
                                            .+++++|+++|++++..+..+
T Consensus       151 ----------------------~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          151 ----------------------ELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             ----------------------HHHHHHHHHTTCCCSCBCCCC
T ss_pred             ----------------------HHHHHHHHHhhcCcccCCccc
Confidence                                  679999999999998776554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.8e-26  Score=217.30  Aligned_cols=154  Identities=33%  Similarity=0.462  Sum_probs=100.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      |+||+||+.|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++                              
T Consensus        16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~------------------------------   65 (169)
T 2y1l_E           16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV------------------------------   65 (169)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH------------------------------
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH------------------------------
Confidence            56777777777777777777777777777777777777777777776665                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |+++|++++..|..|.||||+|+..|+.+++++|++ 
T Consensus        66 -------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-  101 (169)
T 2y1l_E           66 -------------------------------------------LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-  101 (169)
T ss_dssp             -------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             -------------------------------------------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence                                                       555666666666666666666666666666666666 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCC
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK  241 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~  241 (644)
                      .|++++..|.                                   .|+||||+|+..|+.+++++|++. |++++.+|..
T Consensus       102 ~g~~~~~~~~-----------------------------------~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~  145 (169)
T 2y1l_E          102 NGADVNANDM-----------------------------------EGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKF  145 (169)
T ss_dssp             TTCCTTCCCT-----------------------------------TSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             cCCCCCCCCC-----------------------------------CCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCC
Confidence            4555554444                                   455555555555556666666655 5666666666


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLRD  265 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~g  265 (644)
                      |.||||+|+..|+.+++++|++.|
T Consensus       146 g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          146 GKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            666666666666666666666654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.6e-26  Score=217.62  Aligned_cols=159  Identities=23%  Similarity=0.373  Sum_probs=149.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHH
Q psy2733         136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVA  215 (644)
Q Consensus       136 d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A  215 (644)
                      ...+.++|+.|++.|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.++++..  .+..|+||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--VDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHH
Confidence            3467799999999999999999999 7999999999999999999999999999999999987765  567899999999


Q ss_pred             HhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccc
Q psy2733         216 CFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITR  295 (644)
Q Consensus       216 ~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~  295 (644)
                      +..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++        
T Consensus        88 ~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~--------  158 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN--------  158 (169)
T ss_dssp             HHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC--------
T ss_pred             HHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC--------
Confidence            999999999999998 89999999999999999999999999999999999999999999999999999998        


Q ss_pred             cCCchhHHhhhhcCCCCCccchHHHHHHHHHHcC
Q psy2733         296 EKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHG  329 (644)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~G  329 (644)
                                             .+++++|+++|
T Consensus       159 -----------------------~~~~~~L~~~G  169 (169)
T 2y1l_E          159 -----------------------EDLAEILQKLN  169 (169)
T ss_dssp             -----------------------HHHHHHHHTC-
T ss_pred             -----------------------HHHHHHHHHcC
Confidence                                   77999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=1.6e-26  Score=216.83  Aligned_cols=157  Identities=24%  Similarity=0.292  Sum_probs=98.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++                             
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-----------------------------   54 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF-----------------------------   54 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHH-----------------------------
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHH-----------------------------
Confidence            467777777777777777777777777777777777777777777776665                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus        55 --------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   90 (167)
T 3v31_A           55 --------------------------------------------LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD   90 (167)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence                                                        555566666666666666666666666666666666


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCC
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL  240 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~  240 (644)
                       .+++++..+..|.                                   ||||+|+..|+.+++++|++. |++++.+|.
T Consensus        91 -~g~~~~~~~~~g~-----------------------------------t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~  133 (167)
T 3v31_A           91 -CGVDVNEYDWNGG-----------------------------------TPLLYAVHGNHVKCVKMLLES-GADPTIETD  133 (167)
T ss_dssp             -HTCCTTCCCTTSC-----------------------------------CHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT
T ss_pred             -CCCCCCcCCCCCC-----------------------------------CHHHHHHHcCCHHHHHHHHHc-CCCCCCcCC
Confidence             4555555554444                                   555555555555555555554 455555555


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC
Q psy2733         241 KKRTPLMAAVGQGQTSVINYLMLRDVA  267 (644)
Q Consensus       241 ~G~TpL~~Aa~~g~~~iv~~Ll~~gad  267 (644)
                      .|.||||+|+..|+.+++++|++++++
T Consensus       134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          134 SGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            555555555555555555555555433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1e-28  Score=245.19  Aligned_cols=191  Identities=16%  Similarity=0.124  Sum_probs=163.3

Q ss_pred             HHHHHhCCCCCCCCC---CCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCC
Q psy2733         122 DFVLLRNGCNVNIQD---NNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRN  198 (644)
Q Consensus       122 v~~Ll~~gad~n~~d---~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  198 (644)
                      ++.|++.|++++..+   .+|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|++.+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            356889999987655   456688999999999999999999 7999999999999999999999999999999999988


Q ss_pred             ccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC-CCCCCHHHHH--HHcCCHHHHHHHHHCCCCCCcccCCC
Q psy2733         199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKRTPLMAA--VGQGQTSVINYLMLRDVALDIQDIDG  275 (644)
Q Consensus       199 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d-~~G~TpL~~A--a~~g~~~iv~~Ll~~gadvn~~d~~G  275 (644)
                      ++.  .|..|+||||+|+..|+.+++++|++. |++++.++ ..|+||||+|  +..|+.+++++|+++|++++.+|..|
T Consensus        80 ~n~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~  156 (229)
T 2vge_A           80 VNS--PDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGA  156 (229)
T ss_dssp             TTC--CCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGE
T ss_pred             CCC--CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCc
Confidence            765  567899999999999999999999998 89999987 6999999999  99999999999999999999999999


Q ss_pred             CcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCC--CCCCCCCCCCcchhhhcCC
Q psy2733         276 NGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAP--LSLENNNRQKPLDLILEDT  350 (644)
Q Consensus       276 ~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gad--i~~~n~~G~TpL~~A~~~~  350 (644)
                      .|+++.++....                                  .++|++.|++  ++.+|.+|+||||+|+..+
T Consensus       157 ~~~l~~~~~~~~----------------------------------~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          157 VYALWDYSAEFG----------------------------------DELSFREGESVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             EEESSCBCCSST----------------------------------TBCCBCTTCEEEEEESSCTTCSSEEEEEETT
T ss_pred             hHHHHHHhhccc----------------------------------cccCccccccccccccCCCcccHHHHHHHcC
Confidence            999986543322                                  2467788988  6788999999999999654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.1e-26  Score=217.59  Aligned_cols=161  Identities=25%  Similarity=0.307  Sum_probs=148.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHH
Q psy2733         135 QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHV  214 (644)
Q Consensus       135 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~  214 (644)
                      .|.+|.||||.|++.|+.++++.|++..+.+++..+..|.||||+|+..|+.+++++|++.++++..  .|..|+||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc--cCCCCCCHHHH
Confidence            4667899999999999999999999977888888899999999999999999999999999988765  56789999999


Q ss_pred             HHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCccccccc
Q psy2733         215 ACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPIT  294 (644)
Q Consensus       215 A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~  294 (644)
                      |+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|.. ++       
T Consensus        82 A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~-------  152 (165)
T 3twr_A           82 ACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GD-------  152 (165)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TC-------
T ss_pred             HHHcCcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CC-------
Confidence            9999999999999998 89999999999999999999999999999999999999999999999999765 66       


Q ss_pred             ccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCC
Q psy2733         295 REKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGA  330 (644)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Ga  330 (644)
                                              .+++++|+++||
T Consensus       153 ------------------------~~i~~~L~~~gA  164 (165)
T 3twr_A          153 ------------------------TDIQDLLRGDAA  164 (165)
T ss_dssp             ------------------------HHHHHHHHTC--
T ss_pred             ------------------------hHHHHHHhhccc
Confidence                                    679999999886

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=7.7e-29  Score=246.04  Aligned_cols=199  Identities=12%  Similarity=0.066  Sum_probs=168.8

Q ss_pred             HHHHHHCCCCCcccC---CCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCc
Q psy2733          16 LNILLARGACVYYPD---DAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETP   92 (644)
Q Consensus        16 vk~LL~~Ga~~n~~d---~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (644)
                      ++.||++|++++..+   .+|.||||+|+..|+.+++++                                         
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~-----------------------------------------   39 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQ-----------------------------------------   39 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHH-----------------------------------------
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHH-----------------------------------------
Confidence            578999999876554   456788999999999999987                                         


Q ss_pred             ccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCC
Q psy2733          93 MLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSK  172 (644)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  172 (644)
                                                      |++.|+++|..|..|+||||+|+..|+.+++++|++ .|++++..|..
T Consensus        40 --------------------------------Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~d~~   86 (229)
T 2vge_A           40 --------------------------------AVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPDSH   86 (229)
T ss_dssp             --------------------------------HHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             --------------------------------HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC
Confidence                                            777888888899999999999999999999999999 79999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHH--HhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHH
Q psy2733         173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVA--CFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV  250 (644)
Q Consensus       173 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A--~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa  250 (644)
                      |.||||+|+..|+.+++++|++.++++.... +..|+||||+|  +..|+.+++++|++. |++++.+|..|.||++.++
T Consensus        87 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~  164 (229)
T 2vge_A           87 GWTPLHCAASCNDTVICMALVQHGAAIFATT-LSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYS  164 (229)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC-SSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHHHh
Confidence            9999999999999999999999998876632 26899999999  999999999999998 7999999999999999665


Q ss_pred             HcCCHHHHHHHHHCCCC--CCcccCCCCcHHHHHHHcCCcccccc
Q psy2733         251 GQGQTSVINYLMLRDVA--LDIQDIDGNGLLHFLFIKKNFYKTPI  293 (644)
Q Consensus       251 ~~g~~~iv~~Ll~~gad--vn~~d~~G~T~Lh~A~~~~~~~~~~~  293 (644)
                      ..+.   .++|++.|++  ++.+|..|+||||+|+..|+.++++.
T Consensus       165 ~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          165 AEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             CSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             hccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            5543   3678889999  77889999999999999999777644

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=5.6e-26  Score=215.96  Aligned_cols=160  Identities=22%  Similarity=0.292  Sum_probs=99.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           2 TLLHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~-Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      |+||.|+..|+.++|++|++. +.+++.+|..|+||||+|+..|+.+++++                             
T Consensus         7 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-----------------------------   57 (179)
T 3f6q_A            7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEM-----------------------------   57 (179)
T ss_dssp             CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHH-----------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHH-----------------------------
Confidence            677777777777777777776 55677777777777777777777777765                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |++.|++++..|..|.||||+|+..|+.+++++|++
T Consensus        58 --------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (179)
T 3f6q_A           58 --------------------------------------------LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ   93 (179)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                        566666677677777777777777777777777777


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccC
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL  238 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~  238 (644)
                       .|++++..|..|.||||+|+..|+.+++++|++.++++..  .+..|.|||++|+..++.+++++|++. |++++..
T Consensus        94 -~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpl~~A~~~~~~~~~~~L~~~-g~~~~~~  167 (179)
T 3f6q_A           94 -YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI--CNKYGEMPVDKAKAPLRELLRERAEKM-GQNLNRI  167 (179)
T ss_dssp             -TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB--CCTTSCCGGGGSCHHHHHHHHHHHHHT-TCCCSCB
T ss_pred             -cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch--hccCCCCcHHHHHHHHHHHHHHHHHHh-hcCcccC
Confidence             5666666655555555555555555555555544444322  233444444444444444444444444 3444433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=8.3e-26  Score=209.01  Aligned_cols=149  Identities=24%  Similarity=0.317  Sum_probs=111.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      ||||.|+..|+.+++++|++.|++++ .|..|.||||+|+..|+.+++++                              
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~------------------------------   52 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEV------------------------------   52 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHH------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHH------------------------------
Confidence            78999999999999999999998876 58889999999999999988887                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |++.|++++..|..|+||||+|+..|+.+++++|++ 
T Consensus        53 -------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-   88 (153)
T 1awc_B           53 -------------------------------------------LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-   88 (153)
T ss_dssp             -------------------------------------------HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT-
T ss_pred             -------------------------------------------HHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHH-
Confidence                                                       677788888888889999999999999999999888 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHH
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL  227 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L  227 (644)
                      .|++++..|..|.||||+|+..|+.+++++|++.++++..  .+..|.||||+|+..|+.+++++|
T Consensus        89 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT--QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCCHHHHHHh
Confidence            6877777766666666666666666666665555544433  334455555555555555555443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=4.1e-28  Score=242.23  Aligned_cols=158  Identities=19%  Similarity=0.269  Sum_probs=128.6

Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcC
Q psy2733         125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPK  204 (644)
Q Consensus       125 Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  204 (644)
                      |+++|++++.. ..|.||||+|+..|+.+++++|++ .+++++..|..|.||||+|+..|+.+++++|++.+++++.  .
T Consensus        24 ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~--~   99 (239)
T 1ycs_B           24 RIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA--A   99 (239)
T ss_dssp             --------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC--C
T ss_pred             HhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--c
Confidence            66777777754 578999999999999999999999 7889999999999999999999999999999999888765  5


Q ss_pred             CCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCC-CHHHHH--HHcCCHHHHHHHHHCCCCCCcc---------c
Q psy2733         205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR-TPLMAA--VGQGQTSVINYLMLRDVALDIQ---------D  272 (644)
Q Consensus       205 d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~-TpL~~A--a~~g~~~iv~~Ll~~gadvn~~---------d  272 (644)
                      |..|+||||+|+..|+.+++++|+++ |++++.+|..|. ||||+|  +..|+.+++++|+++|++++..         +
T Consensus       100 d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d  178 (239)
T 1ycs_B          100 DSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD  178 (239)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEec
Confidence            67899999999999999999999998 899999998877 999999  7889999999999999998876         4


Q ss_pred             CCCCcHHHHHHHcCC
Q psy2733         273 IDGNGLLHFLFIKKN  287 (644)
Q Consensus       273 ~~G~T~Lh~A~~~~~  287 (644)
                      ..|.++++++...|.
T Consensus       179 ~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          179 YEPQNDDELPMKEGD  193 (239)
T ss_dssp             BCCSSTTBCCBCSSC
T ss_pred             cCCCCCCcccccCCC
Confidence            457777777766665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=8.2e-27  Score=232.80  Aligned_cols=180  Identities=17%  Similarity=0.194  Sum_probs=132.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHH
Q psy2733         137 NNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVAC  216 (644)
Q Consensus       137 ~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~  216 (644)
                      ..|.||||.|++.|+.++++.|++ .|++++.. ..|.||||+|+..|+.++++.|++.+++++.  .|..|+||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAV   78 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC--CCTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhc-cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHH
Confidence            469999999999999999999999 79999864 7889999999999999999999999987655  5688999999999


Q ss_pred             hcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCC-cHHHHH--HHcCCcccccc
Q psy2733         217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN-GLLHFL--FIKKNFYKTPI  293 (644)
Q Consensus       217 ~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~-T~Lh~A--~~~~~~~~~~~  293 (644)
                      ..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..++      
T Consensus        79 ~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~------  151 (239)
T 1ycs_B           79 CAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY------  151 (239)
T ss_dssp             HHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTC------
T ss_pred             HcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhcc------
Confidence            99999999999998 899999999999999999999999999999999999999998887 999999  66666      


Q ss_pred             cccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCC---------CCCCCCcchhhhcCCcH
Q psy2733         294 TREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLE---------NNNRQKPLDLILEDTSL  352 (644)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~---------n~~G~TpL~~A~~~~~~  352 (644)
                                               .+++++|+++|++++..         +..+.+|++++.+.++.
T Consensus       152 -------------------------~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~  194 (239)
T 1ycs_B          152 -------------------------TQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC  194 (239)
T ss_dssp             -------------------------CCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred             -------------------------HHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCE
Confidence                                     45999999999999887         55678888888866653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=1.5e-25  Score=207.30  Aligned_cols=144  Identities=22%  Similarity=0.260  Sum_probs=135.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhc
Q psy2733         139 QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFN  218 (644)
Q Consensus       139 G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~  218 (644)
                      +.|+|+.|+..|+.+++++|++ .+.+++ .+..|.||||+|+..|+.+++++|++.++++..  .+..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMA-NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--RTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH-HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHH-cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHc
Confidence            4589999999999999999999 677776 588899999999999999999999999887765  567899999999999


Q ss_pred             CcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         219 DHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       219 g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      |+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus        78 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           78 GHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             TCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            999999999998 89999999999999999999999999999999999999999999999999999999

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=5.7e-29  Score=264.50  Aligned_cols=172  Identities=10%  Similarity=-0.015  Sum_probs=95.8

Q ss_pred             cHHHHHHH-cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           2 TLLHILAY-QGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         2 TpLh~Aa~-~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      +++++|+. .++.+++++|+++|++.       +||||+|+..|+.++|++| ..++....                   
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-------------------  120 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEI-------------------  120 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSS-------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHH-------------------
Confidence            35566665 46677777777766543       3777777777777777776 44431110                   


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCC---CCCCCCCCcHHHHHHHc
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNV---NIQDNNQDTPMHDAVAK  149 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~---n~~d~~G~TpL~~A~~~  149 (644)
                                                ....+..+.||||+|+       +++|+++|+++   +..+.+ +||||+|+..
T Consensus       121 --------------------------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~  173 (376)
T 2aja_A          121 --------------------------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN  173 (376)
T ss_dssp             --------------------------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT
T ss_pred             --------------------------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC
Confidence                                      0002223334444442       44455555431   122222 5666666666


Q ss_pred             CCHHHHHHHhcCCCCCccc--cCCCCCcHHHHHH-HcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHH
Q psy2733         150 GFEEIQLLLLSHPEVNLYL--ENSKGFNILNYAV-LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVEL  226 (644)
Q Consensus       150 g~~~iv~~Ll~~~~~~~~~--~d~~g~tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~  226 (644)
                      |+.+++++|++ .|++++.  .+..|.||||+|+ ..|+.++|++|++.++         .|.||||+|+..|+.+++++
T Consensus       174 G~~eiv~~Ll~-~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~~Aa~~g~~evv~l  243 (376)
T 2aja_A          174 GHLHVLNRLCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEIHEFEYGEKYVNPF  243 (376)
T ss_dssp             TCHHHHHHHHH-SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHHCTTTTTTTTHHHH
T ss_pred             CCHHHHHHHHH-cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHHHHHHCCCHHHHHH
Confidence            66666666666 4666555  5556666666666 6666666666665441         25566666666666666666


Q ss_pred             HHHhcCCCccc
Q psy2733         227 LVEKYKVNINA  237 (644)
Q Consensus       227 Ll~~~g~~in~  237 (644)
                      |++. |++++.
T Consensus       244 L~~~-ga~~~~  253 (376)
T 2aja_A          244 IARH-VNRLKE  253 (376)
T ss_dssp             HHHH-HHHHHH
T ss_pred             HHhc-Cccccc
Confidence            6665 444433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.7e-25  Score=205.88  Aligned_cols=150  Identities=26%  Similarity=0.337  Sum_probs=118.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           2 TLLHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~-Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      ||||+|+..|+.+++++|++. +.+++.+|..|+||||+ +..|+.+++++                             
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~-----------------------------   53 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALE-----------------------------   53 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHH-----------------------------
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHH-----------------------------
Confidence            789999999999999999988 44888889999999999 88899888876                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus        54 --------------------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   89 (156)
T 1bd8_A           54 --------------------------------------------LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE   89 (156)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence                                                        777788888888889999999999999999999888


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHH
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE  229 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  229 (644)
                       .|++++..|..|.||||+|+..|+.+++++|++. +++..  .|..|.||||+|+..|+.+++++|++
T Consensus        90 -~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~--~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           90 -HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR--RDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             -TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC--CCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             -cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence             6888887777777777777777777777777765 43332  44566666666666666666666664

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.1e-25  Score=206.66  Aligned_cols=144  Identities=22%  Similarity=0.286  Sum_probs=136.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhc
Q psy2733         139 QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFN  218 (644)
Q Consensus       139 G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~  218 (644)
                      |.||||+|+..|+.+++++|++..+.+++..+..|.||||+ +..|+.++++.|++.++++..  .|..|+||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV--QDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHc
Confidence            46899999999999999999996566899999999999999 999999999999999988765  568899999999999


Q ss_pred             CcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         219 DHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       219 g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      |+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++. ++++.+|..|.||||+|+..++
T Consensus        79 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           79 GFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             CcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc
Confidence            999999999998 899999999999999999999999999999999 9999999999999999999998

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=6.6e-25  Score=205.41  Aligned_cols=147  Identities=24%  Similarity=0.304  Sum_probs=135.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHH
Q psy2733         169 ENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA  248 (644)
Q Consensus       169 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~  248 (644)
                      .+..|.|||+.|+..|+.++++.|++.+... ....+..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-ccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHH
Confidence            4667899999999999999999999865433 233457899999999999999999999998 89999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHc
Q psy2733         249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKH  328 (644)
Q Consensus       249 Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~  328 (644)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..++                               .+++++|+++
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-------------------------------~~~v~~Ll~~  130 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK-------------------------------YEICKLLLQH  130 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-------------------------------HHHHHHHHHT
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC-------------------------------HHHHHHHHHc
Confidence            999999999999999999999999999999999999998                               7799999999


Q ss_pred             CCCCCCCCCCCCCcchhhhc
Q psy2733         329 GAPLSLENNNRQKPLDLILE  348 (644)
Q Consensus       329 Gadi~~~n~~G~TpL~~A~~  348 (644)
                      |++++.+|..|+|||++|.+
T Consensus       131 ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A          131 GADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             TCCTTCCCTTSCCTGGGSCT
T ss_pred             CCCCcccCCCCCChhHhHhc
Confidence            99999999999999999984

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.8e-24  Score=200.87  Aligned_cols=145  Identities=19%  Similarity=0.148  Sum_probs=95.9

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCC-HH
Q psy2733         168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT-PL  246 (644)
Q Consensus       168 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~T-pL  246 (644)
                      ..+..|.||||+|+..|+.+++++|++.++++..  .+..|+||||+|+ .|+.+++++|++. |++++.+|..|.| ||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNA--PNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPV   82 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC--CCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence            3455667777777777777777777776665544  4467778888774 7788888888877 7888888888887 88


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHH
Q psy2733         247 MAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLV  326 (644)
Q Consensus       247 ~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll  326 (644)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..++                               .+++++|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-------------------------------~~~v~~Ll  131 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH-------------------------------RDVARYLR  131 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC-------------------------------HHHHHHHS
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCH-------------------------------HHHHHHHH
Confidence            88888888888888888888888888888888888888777                               66888888


Q ss_pred             HcCCCCCCCCCCCCCcchhhh
Q psy2733         327 KHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       327 ~~Gadi~~~n~~G~TpL~~A~  347 (644)
                      ++|++++.+|..|.||.+-+.
T Consensus       132 ~~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B          132 AAAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             SCC------------------
T ss_pred             HcCCCCCccCcCcCcccccCC
Confidence            888888888888888876443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=4.7e-24  Score=193.19  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=83.6

Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCC-C
Q psy2733         164 VNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK-K  242 (644)
Q Consensus       164 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~-G  242 (644)
                      .+++..+..|.||||+|+..|+.+++++|++.++++..  .+..|+||||+|+. |+.+++++|++. |++++.+|.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA--LNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC--cCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCC
Confidence            45555666666666666666666666666666555443  34567777777777 777777777776 6777777777 7


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       243 ~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  123 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH  123 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            777777777777777777777777777777777777777777776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.3e-26  Score=246.40  Aligned_cols=275  Identities=12%  Similarity=0.070  Sum_probs=177.8

Q ss_pred             HHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHh-cCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCC
Q psy2733           8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAAF-GNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLP   85 (644)
Q Consensus         8 a~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~-~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (644)
                      ...+..+.+..+++.+.+++.  ..+.+++++|.. .++.+++++| .++.                             
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~a~~~~~~~~~~~~l~~~g~-----------------------------   90 (376)
T 2aja_A           42 MTLSYKEAIHIFLPGTKNMEQ--VRQLLCLYYAHYNRNAKQLWSDAHKKGI-----------------------------   90 (376)
T ss_dssp             HHSCHHHHHHHCCCCSSHHHH--HHHHHHHHHHHTTTTCTTHHHHHHHHTC-----------------------------
T ss_pred             hhccHHHHHHHHhcCCCCHHH--HHHHHHHHHHHhcCCCHHHHHHHHHcCC-----------------------------
Confidence            335667888888877665533  245789999887 5778888886 4432                             


Q ss_pred             CCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCC---CCCCCCCCcHHHHHHHcCCHHHH
Q psy2733          86 KVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNV---NIQDNNQDTPMHDAVAKGFEEIQ  155 (644)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~---n~~d~~G~TpL~~A~~~g~~~iv  155 (644)
                                                .+.||||+|+       ++.|++.|+..   +..+..|.||||+|+..|+.+++
T Consensus        91 --------------------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv  144 (376)
T 2aja_A           91 --------------------------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL  144 (376)
T ss_dssp             --------------------------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHH
T ss_pred             --------------------------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHH
Confidence                                      2347888885       78888888732   23344677888888888888888


Q ss_pred             HHHhcCCCCC---ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHH-hcCcHHHHHHHHHhc
Q psy2733         156 LLLLSHPEVN---LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVAC-FNDHIEIVELLVEKY  231 (644)
Q Consensus       156 ~~Ll~~~~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~-~~g~~~~v~~Ll~~~  231 (644)
                      ++|++ .|++   .+..+.+ .||||+|+..|+.++|++|++.++++.....|..|+||||+|+ ..|+.++|++|++. 
T Consensus       145 ~~Ll~-~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-  221 (376)
T 2aja_A          145 NRLCE-LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-  221 (376)
T ss_dssp             HHHHH-SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-
T ss_pred             HHHHh-CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-
Confidence            88888 5654   2332333 7888888888888888888888876432112356788888888 88888888888875 


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCc-hhHHhhhhcCC
Q psy2733         232 KVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSV-PIYEEYLSVGG  310 (644)
Q Consensus       232 g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  310 (644)
                      |.       .|.||||+|+..|+.+++++|+++|++++.++    ++++.|+..|+.+++........ .+...+.... 
T Consensus       222 ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~-  289 (376)
T 2aja_A          222 PV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN-  289 (376)
T ss_dssp             HH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC-
T ss_pred             CC-------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc-
Confidence            32       27788888888888888888888888876655    36667777777664421100000 0011111111 


Q ss_pred             CCCccchHHHHHHHHHHcCC-----CCCCCCCCCCCcchhhhcC--CcHHHHHHH
Q psy2733         311 PSNEHGILLAVFLFLVKHGA-----PLSLENNNRQKPLDLILED--TSLLNEIME  358 (644)
Q Consensus       311 ~~~~~~~~~~iv~~Ll~~Ga-----di~~~n~~G~TpL~~A~~~--~~~~~~l~~  358 (644)
                          .....+.+++|++.++     +.....+.+.|||++|+..  .++++.|+.
T Consensus       290 ----~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~  340 (376)
T 2aja_A          290 ----DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS  340 (376)
T ss_dssp             ----CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTT
T ss_pred             ----hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHc
Confidence                2234677888876431     1122234567899999954  345666654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=5.9e-24  Score=192.57  Aligned_cols=134  Identities=19%  Similarity=0.215  Sum_probs=127.6

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCC-
Q psy2733         129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD-  207 (644)
Q Consensus       129 gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~-  207 (644)
                      +++++..|..|.||||+|+..|+.+++++|++ .+++++.++..|.||||+|+. |+.+++++|++.++++..  .|.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~--~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC--ADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC--CBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC--cCCCC
Confidence            57899999999999999999999999999999 799999999999999999999 999999999999988766  5567 


Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q psy2733         208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA  267 (644)
Q Consensus       208 g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gad  267 (644)
                      |+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999998 899999999999999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=5.4e-24  Score=197.61  Aligned_cols=145  Identities=19%  Similarity=0.132  Sum_probs=118.5

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCch-H
Q psy2733         133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFT-P  211 (644)
Q Consensus       133 n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T-~  211 (644)
                      +..+..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+ .|+.+++++|++.++++..  .+..|+| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~--~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC--ADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC--CCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC--cCCCCCcHH
Confidence            4456789999999999999999999999 69999999999999999995 9999999999999987765  5678999 9


Q ss_pred             HHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHH
Q psy2733         212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFL  282 (644)
Q Consensus       212 Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A  282 (644)
                      ||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999998 899999999999999999999999999999999999999999999998744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=9.2e-24  Score=202.40  Aligned_cols=160  Identities=10%  Similarity=0.092  Sum_probs=132.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcH----HHHHHHHHhcCCCcccCCCCCCCHHHH
Q psy2733         173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHI----EIVELLVEKYKVNINALDLKKRTPLMA  248 (644)
Q Consensus       173 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~----~~v~~Ll~~~g~~in~~d~~G~TpL~~  248 (644)
                      ++++|+.|+..|+.+.++.++..+....   .+..|+||||+|+..|+.    +++++|++. |+++|.+|..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~---~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDK---ESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCH---HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccc---cccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHH
Confidence            4678999999999999988888764321   125699999999999864    589999998 89999999999999999


Q ss_pred             HHHcCC------HHHHHHHHHCCCCCCcccCCCC-cHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHH
Q psy2733         249 AVGQGQ------TSVINYLMLRDVALDIQDIDGN-GLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV  321 (644)
Q Consensus       249 Aa~~g~------~~iv~~Ll~~gadvn~~d~~G~-T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  321 (644)
                      |+..|+      .+++++|+++|+++|.+|..|+ ||||+|+..+...                          ....++
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~--------------------------~~~~~i  135 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE--------------------------NEMIPL  135 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH--------------------------HHHHHH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh--------------------------hhHHHH
Confidence            999987      6889999999999999999999 9999999854311                          223679


Q ss_pred             HHHHHH-cCCCCCCCCCCCCCcchhhhcCC--cHHHHHHHHhhh
Q psy2733         322 FLFLVK-HGAPLSLENNNRQKPLDLILEDT--SLLNEIMEHARE  362 (644)
Q Consensus       322 v~~Ll~-~Gadi~~~n~~G~TpL~~A~~~~--~~~~~l~~~~~~  362 (644)
                      +++|++ +|++++.+|..|+||||+|++.+  .+++.|..+...
T Consensus       136 v~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999 99999999999999999999654  345666655543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=9.5e-23  Score=184.56  Aligned_cols=122  Identities=30%  Similarity=0.352  Sum_probs=112.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++                             
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~-----------------------------   65 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV-----------------------------   65 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH-----------------------------
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH-----------------------------
Confidence            489999999999999999999999999999999999999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus        66 --------------------------------------------Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  101 (136)
T 2jab_A           66 --------------------------------------------LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK  101 (136)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                        778888888899999999999999999999999999


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN  196 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  196 (644)
                       .|++++..|..|.||||+|+..|+.+++++|++.|
T Consensus       102 -~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          102 -HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             -TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             -cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence             79999999999999999999999999999998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=4.5e-24  Score=204.53  Aligned_cols=162  Identities=17%  Similarity=0.122  Sum_probs=141.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCccccC-CCCCcHHHHHHHcCCH----HHHHHHHHhcCCccCCcCCCCCchHHH
Q psy2733         139 QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN-SKGFNILNYAVLRGNM----KVTEKILALNRNLATVPKTSDGFTPLH  213 (644)
Q Consensus       139 G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~T~Lh  213 (644)
                      ++++|+.|++.|+.+.++.++. .+  ++..+ ..|+||||+|+..|+.    +++++|++.|++++.  .|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~-~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~--~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFE-KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS--RTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHH-HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC--CCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHh-cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC--CCCCCCcHHH
Confidence            5689999999999999999988 44  34455 7799999999999975    589999999998876  5689999999


Q ss_pred             HHHhcCc------HHHHHHHHHhcCCCcccCCCCCC-CHHHHHHHcC-----CHHHHHHHHH-CCCCCCcccCCCCcHHH
Q psy2733         214 VACFNDH------IEIVELLVEKYKVNINALDLKKR-TPLMAAVGQG-----QTSVINYLML-RDVALDIQDIDGNGLLH  280 (644)
Q Consensus       214 ~A~~~g~------~~~v~~Ll~~~g~~in~~d~~G~-TpL~~Aa~~g-----~~~iv~~Ll~-~gadvn~~d~~G~T~Lh  280 (644)
                      +|+..++      .+++++|+++ |+++|.+|..|+ ||||+|+..+     +.+++++|++ +|++++.+|..|+||||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            9999886      6889999998 899999999999 9999999955     4579999999 99999999999999999


Q ss_pred             HHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCC
Q psy2733         281 FLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENN  337 (644)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~  337 (644)
                      +|+..++                               .+++++|.+...+.+++++
T Consensus       160 ~A~~~~~-------------------------------~~~v~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          160 FVKRCQK-------------------------------PIALKMMEDYIKKYNLKEN  185 (186)
T ss_dssp             HHHTTTC-------------------------------HHHHHHHHHHHHHHTCCC-
T ss_pred             HHHHcCC-------------------------------HHHHHHHHHHHHHHhcccC
Confidence            9999988                               6789999887766665553

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=5.4e-22  Score=175.89  Aligned_cols=113  Identities=31%  Similarity=0.490  Sum_probs=83.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHH
Q psy2733         172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG  251 (644)
Q Consensus       172 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~  251 (644)
                      +|.||||+|+..|+.+++++|++.+.++..  .+..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHH
Confidence            366777777777777777777776665543  445677777777777777777777776 67777777777777777777


Q ss_pred             cCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         252 QGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       252 ~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  113 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH  113 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCc
Confidence            777777777777777777777777777777777777

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=4.8e-22  Score=176.21  Aligned_cols=124  Identities=32%  Similarity=0.479  Sum_probs=115.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++                             
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~-----------------------------   53 (126)
T 1n0r_A            3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL-----------------------------   53 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHH-----------------------------
T ss_pred             ccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHH-----------------------------
Confidence            699999999999999999999999999999999999999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |++.|++++.+|..|.||||+|+..|+.+++++|++
T Consensus        54 --------------------------------------------Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~   89 (126)
T 1n0r_A           54 --------------------------------------------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE   89 (126)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence                                                        777888888899999999999999999999999999


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCC
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRN  198 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  198 (644)
                       .|++++.++..|.|||++|+..|+.+++++|++.|++
T Consensus        90 -~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           90 -AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence             7999999999999999999999999999999998864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=7.6e-22  Score=178.59  Aligned_cols=112  Identities=26%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc
Q psy2733         173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQ  252 (644)
Q Consensus       173 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~  252 (644)
                      +.||||+|+..|+.++++.|++.++++..  .|..|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNA--KDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHc
Confidence            34444444444444444444444444332  234455555555555555555555554 455555555555555555555


Q ss_pred             CCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         253 GQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       253 g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      |+.+++++|+++|++++.+|..|+||||+|+..++
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~  125 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN  125 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCC
Confidence            55555555555555555555555555555555555

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=1.2e-21  Score=173.83  Aligned_cols=117  Identities=17%  Similarity=0.183  Sum_probs=106.1

Q ss_pred             CCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHH
Q psy2733         205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI  284 (644)
Q Consensus       205 d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~  284 (644)
                      +..|.||||+|+..|+.+++++|++. |.+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            36788999999999999999999998 79999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHH
Q psy2733         285 KKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLN  354 (644)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~  354 (644)
                      .++                               .+++++|+++|++++.+|.+|+|||++|. ..++.+
T Consensus        83 ~~~-------------------------------~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~-~~~~~~  120 (123)
T 3aaa_C           83 EGH-------------------------------VSCVKLLLSKGADKTVKGPDGLTAFEATD-NQAIKA  120 (123)
T ss_dssp             HTC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHCC-CHHHHH
T ss_pred             cCC-------------------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHhC-CHHHHH
Confidence            998                               77999999999999999999999999996 444433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=1.8e-21  Score=176.18  Aligned_cols=112  Identities=23%  Similarity=0.296  Sum_probs=106.6

Q ss_pred             CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHH
Q psy2733         204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLF  283 (644)
Q Consensus       204 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~  283 (644)
                      .|..|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            468899999999999999999999998 8999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhh
Q psy2733         284 IKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~  347 (644)
                      ..++                               .+++++|+++|++++.+|..|+|||++|+
T Consensus        85 ~~~~-------------------------------~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           85 KNGH-------------------------------VDIVKLLLSYGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             HTTC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred             HcCC-------------------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            9988                               77999999999999999999999999998

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=6.5e-22  Score=188.71  Aligned_cols=136  Identities=19%  Similarity=0.185  Sum_probs=112.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++                             
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~-----------------------------   94 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRL-----------------------------   94 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHH-----------------------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHH-----------------------------
Confidence            478888888888888888888 88888888888888888888888888876                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQD-NNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d-~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                  |+++|+++|.+| ..|+||||+|+..|+.+++++|+
T Consensus        95 --------------------------------------------Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  130 (183)
T 3deo_A           95 --------------------------------------------LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV  130 (183)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHH
Confidence                                                        677777887777 78888888888888888888888


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHh
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK  230 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  230 (644)
                      + .|++++.+|..|.||||+|+..++.                   ..+.++|++|+..|..+++++|.++
T Consensus       131 ~-~ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          131 E-LGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             H-HTCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             H-cCCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            8 6888888888888888888864321                   3456888888888888888888754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=9.3e-22  Score=196.82  Aligned_cols=106  Identities=23%  Similarity=0.231  Sum_probs=63.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      ||||+|+..|+.++|++|++ |++++.+|..|+||||+|+..|+.++|++                              
T Consensus        47 t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~------------------------------   95 (244)
T 3ui2_A           47 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRL------------------------------   95 (244)
T ss_dssp             HHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHH------------------------------
T ss_pred             CHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHH------------------------------
Confidence            56666666666666666666 66666666666666666666666666554                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQD-NNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d-~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                 |+++|+++|.++ ..|+||||+|+..|+.+++++|++
T Consensus        96 -------------------------------------------Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  132 (244)
T 3ui2_A           96 -------------------------------------------LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE  132 (244)
T ss_dssp             -------------------------------------------HHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             -------------------------------------------HHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                       455555555555 456666666666666666666666


Q ss_pred             CCCCCccccCCCCCcHHHHHHH
Q psy2733         161 HPEVNLYLENSKGFNILNYAVL  182 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~  182 (644)
                       .|++++.+|..|.||||+|+.
T Consensus       133 -~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          133 -LGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             -TTCCTTCCCTTCCCHHHHHHH
T ss_pred             -CCCCCCCCCCCCCcHHHHHHH
Confidence             466666666666666666653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=9.6e-23  Score=194.49  Aligned_cols=163  Identities=20%  Similarity=0.142  Sum_probs=132.7

Q ss_pred             HHHcCCHHHHHHHHHCCCCCcc-----------cCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccc
Q psy2733           7 LAYQGCVEELNILLARGACVYY-----------PDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTT   75 (644)
Q Consensus         7 Aa~~G~~e~vk~LL~~Ga~~n~-----------~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~   75 (644)
                      |++.|..+.+++|++.+.....           .+..|+||||+|+..|+.+++++                        
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~------------------------   62 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQ------------------------   62 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHH------------------------
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHH------------------------
Confidence            4455666666777754332211           25578899999999999999887                        


Q ss_pred             ccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy2733          76 EKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQ  155 (644)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv  155 (644)
                                                                       |++ |+++|..|..|+||||+|+..|+.+++
T Consensus        63 -------------------------------------------------Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v   92 (183)
T 3deo_A           63 -------------------------------------------------LLE-DRDVDAVDENGRTALLFVAGLGSDKCV   92 (183)
T ss_dssp             -------------------------------------------------HTT-TSCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             -------------------------------------------------HHh-cCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence                                                             556 778888889999999999999999999


Q ss_pred             HHHhcCCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCC
Q psy2733         156 LLLLSHPEVNLYLEN-SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN  234 (644)
Q Consensus       156 ~~Ll~~~~~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~  234 (644)
                      ++|++ .|++++..+ ..|.||||+|+..|+.+++++|++.++++..  .|..|+||||+|+..++.             
T Consensus        93 ~~Ll~-~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~d~~g~tpl~~A~~~~~~-------------  156 (183)
T 3deo_A           93 RLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV--EDERGLTALELAREILKT-------------  156 (183)
T ss_dssp             HHHHH-TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHHHHT-------------
T ss_pred             HHHHH-cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcC--CCCCCCCHHHHHHHhccC-------------
Confidence            99999 799998888 8899999999999999999999999888765  568899999999864332             


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q psy2733         235 INALDLKKRTPLMAAVGQGQTSVINYLMLR  264 (644)
Q Consensus       235 in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~  264 (644)
                           ..+.++|++|+..|+.+++++|.++
T Consensus       157 -----~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 -----TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             -----CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             -----cccccHHHHHHHcCHHHHHHHHHHh
Confidence                 3467899999999999999999764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=6.4e-22  Score=179.16  Aligned_cols=131  Identities=24%  Similarity=0.267  Sum_probs=81.5

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCC
Q psy2733         129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDG  208 (644)
Q Consensus       129 gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g  208 (644)
                      |+|+ .+|.+|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.++++..  .|..|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g   76 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT--TGYQN   76 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCGGG
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC--cCCCC
Confidence            4555 566677777777777777777777777 5666666666666666666666666666666666655443  34556


Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q psy2733         209 FTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR  264 (644)
Q Consensus       209 ~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~  264 (644)
                      +||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..+..+++++|.+.
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            6666666666666666666665 566666666666666666666666665555443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=2.4e-21  Score=199.99  Aligned_cols=138  Identities=17%  Similarity=0.096  Sum_probs=111.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcc------cCCCCCcHHHHHHhc---CCHHHHHHHhhccCCCccchhhhhhhhhc
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYY------PDDAGDTALHYAAFG---NKPDAIQINSHVSGANRSRKHIYKERHRT   72 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~------~d~~G~TpLh~Aa~~---g~~eiv~lL~~~a~~~~~~~~~~~~~~~~   72 (644)
                      ++||.|+..|+++.++.|++.|++++.      .|..|+||||+|+..   |+.+++++                     
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~---------------------  211 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF---------------------  211 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHH---------------------
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHH---------------------
Confidence            468999999999999999999998887      688899999999986   77788776                     


Q ss_pred             cccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2733          73 VTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFE  152 (644)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~  152 (644)
                                                                          |+++|+++|.+|..|+||||+|+..|+.
T Consensus       212 ----------------------------------------------------Ll~~gadvn~~d~~G~TpLh~A~~~g~~  239 (301)
T 2b0o_E          212 ----------------------------------------------------IIQNGGHLDAKAADGNTALHYAALYNQP  239 (301)
T ss_dssp             ----------------------------------------------------HHHHSSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ----------------------------------------------------HHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence                                                                7777888888888899999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcH
Q psy2733         153 EIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHI  221 (644)
Q Consensus       153 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~  221 (644)
                      +++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.+++        .|.||||+|+..|+.
T Consensus       240 ~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          240 DCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred             HHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCCc
Confidence            99999998 7889998998999999999999999999999888753        467888888887763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.84  E-value=1.1e-21  Score=193.07  Aligned_cols=137  Identities=21%  Similarity=0.227  Sum_probs=97.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHH
Q psy2733         170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAA  249 (644)
Q Consensus       170 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~A  249 (644)
                      +..|.||||+|+..|+.++++.|++.++++..  .|..|+||||+|+..|+.+++++|++..|++++.+|..|+||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNG--LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            45577777777777777777777777766544  4567888888888888888888888766788888888888888888


Q ss_pred             HHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcC
Q psy2733         250 VGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHG  329 (644)
Q Consensus       250 a~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~G  329 (644)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..+.                               .++++.|+++|
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~-------------------------------~~~l~~l~~~~  196 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC-------------------------------ASLLKKKQGTD  196 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHH-------------------------------HHHHC------
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhH-------------------------------HHHHHHHhccc
Confidence            88888888888888888888888888888888887665                               67888888888


Q ss_pred             CCCCCCCCCC
Q psy2733         330 APLSLENNNR  339 (644)
Q Consensus       330 adi~~~n~~G  339 (644)
                      ++.+.+|.+|
T Consensus       197 ~~~~~~~~~~  206 (222)
T 3ehr_A          197 AVRTLSNAED  206 (222)
T ss_dssp             ----------
T ss_pred             hhhhccchhh
Confidence            8887776655

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=4.2e-20  Score=188.54  Aligned_cols=135  Identities=17%  Similarity=0.119  Sum_probs=114.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCccC----CcCCCCCchHHHHHHhc---CcHHHHHHHHHhcCCCcccCCCCCCCH
Q psy2733         173 GFNILNYAVLRGNMKVTEKILALNRNLAT----VPKTSDGFTPLHVACFN---DHIEIVELLVEKYKVNINALDLKKRTP  245 (644)
Q Consensus       173 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~----~~~d~~g~T~Lh~A~~~---g~~~~v~~Ll~~~g~~in~~d~~G~Tp  245 (644)
                      ..++|+.|+..|+.+.++.+++.+.+...    ...+..|+||||+|+..   |+.+++++|++. |+++|.+|..|+||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCH
Confidence            34567777777777777777777766432    22357799999999998   899999999998 89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHH
Q psy2733         246 LMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFL  325 (644)
Q Consensus       246 L~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~L  325 (644)
                      ||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++                               .+++++|
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~-------------------------------~~~v~~L  257 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH-------------------------------EHCEELL  257 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-------------------------------HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCC-------------------------------HHHHHHH
Confidence            999999999999999999999999999999999999999988                               7799999


Q ss_pred             HHcCCCCCCCCCCCCCcchhhh
Q psy2733         326 VKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       326 l~~Gadi~~~n~~G~TpL~~A~  347 (644)
                      +++|++        .+++|+++
T Consensus       258 l~~ga~--------~~~~~~~v  271 (278)
T 1dcq_A          258 TQALSG--------RFNSHVHV  271 (278)
T ss_dssp             HHHHTT--------CCCSSCCC
T ss_pred             HHcCCC--------CCCcceee
Confidence            999985        45666665

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=9.4e-21  Score=195.59  Aligned_cols=141  Identities=14%  Similarity=0.083  Sum_probs=123.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCccCC----cCCCCCchHHHHHHhc---CcHHHHHHHHHhcCCCcccCCCCCCC
Q psy2733         172 KGFNILNYAVLRGNMKVTEKILALNRNLATV----PKTSDGFTPLHVACFN---DHIEIVELLVEKYKVNINALDLKKRT  244 (644)
Q Consensus       172 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~----~~d~~g~T~Lh~A~~~---g~~~~v~~Ll~~~g~~in~~d~~G~T  244 (644)
                      .+.++|+.|+..|+.+.++.|++.++++...    ..+..|+||||+|+..   |+.+++++|++. |+++|.+|..|+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCC
Confidence            3457899999999999999999998886542    1357899999999997   899999999998 8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHH
Q psy2733         245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLF  324 (644)
Q Consensus       245 pL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~  324 (644)
                      |||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++                               .+++++
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~-------------------------------~~iv~~  277 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH-------------------------------KECEEL  277 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTC-------------------------------HHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC-------------------------------HHHHHH
Confidence            9999999999999999999999999999999999999999998                               779999


Q ss_pred             HHHcCCCCCCCCCCCCCcchhhhcCC
Q psy2733         325 LVKHGAPLSLENNNRQKPLDLILEDT  350 (644)
Q Consensus       325 Ll~~Gadi~~~n~~G~TpL~~A~~~~  350 (644)
                      |+++|++      .|.||||+|++.+
T Consensus       278 Ll~~ga~------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          278 LEQAQAG------TFAFPLHVDYSWV  297 (301)
T ss_dssp             HHHHHHH------TTSSCCC------
T ss_pred             HHHhcCC------CCCChhHHHHhcC
Confidence            9999987      5899999998543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=5.3e-21  Score=169.73  Aligned_cols=110  Identities=24%  Similarity=0.323  Sum_probs=97.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++                             
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-----------------------------   58 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF-----------------------------   58 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHH-----------------------------
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHH-----------------------------
Confidence            378999999999999999999999999999999999999999999998887                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        59 --------------------------------------------Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~   94 (123)
T 3aaa_C           59 --------------------------------------------LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS   94 (123)
T ss_dssp             --------------------------------------------HHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                        778888888889899999999999999999999999


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcC
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRG  184 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g  184 (644)
                       .|++++.+|..|.||||+|...+
T Consensus        95 -~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           95 -KGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             -TTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             -cCCCCCCcCCCCCCHHHHhCCHH
Confidence             68999999999999999884433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=2.3e-20  Score=186.65  Aligned_cols=143  Identities=22%  Similarity=0.135  Sum_probs=127.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHH
Q psy2733         137 NNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVAC  216 (644)
Q Consensus       137 ~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~  216 (644)
                      ..|.||||+|+..|+.++++.|++  +++++..|..|.||||+|+..|+.+++++|++.+++++... +..|+||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC-SSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCC-CCCCCCHHHHHH
Confidence            478999999999999999999998  78999999999999999999999999999999998876632 267999999999


Q ss_pred             hcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCccccccccc
Q psy2733         217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE  296 (644)
Q Consensus       217 ~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~  296 (644)
                      ..|+.+++++|++. |++++.+|..|.||||+|+..+                 ....|.||||+|+..++         
T Consensus       120 ~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~-----------------~~~~~~~~l~~a~~~g~---------  172 (244)
T 3ui2_A          120 GYVRPEVVEALVEL-GADIEVEDERGLTALELAREIL-----------------KTTPKGNPMQFGRRIGL---------  172 (244)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHH-----------------TTCCCSSHHHHHHHHHH---------
T ss_pred             HcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHH-----------------hccCCCCHHHHHHHcCh---------
Confidence            99999999999998 8999999999999999998632                 23578999999999887         


Q ss_pred             CCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCC
Q psy2733         297 KSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAP  331 (644)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gad  331 (644)
                                            .+++++|++++.+
T Consensus       173 ----------------------~~iv~~L~~~~~~  185 (244)
T 3ui2_A          173 ----------------------EKVINVLEGQVFE  185 (244)
T ss_dssp             ----------------------HHHHHHHHHHHEE
T ss_pred             ----------------------HHHHHHHHHhccc
Confidence                                  6799999987654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=9e-21  Score=186.39  Aligned_cols=138  Identities=21%  Similarity=0.277  Sum_probs=114.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHh-cCCccCCcCCCCCchHHH
Q psy2733         135 QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL-NRNLATVPKTSDGFTPLH  213 (644)
Q Consensus       135 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~d~~g~T~Lh  213 (644)
                      .+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++. ++++..  .|..|+||||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~--~d~~g~tpL~  145 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ--QNKLGDTALH  145 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC--CCTTSCCHHH
T ss_pred             cccccccccccccccCcHHHHHHHHh-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc--cCCCCCCHHH
Confidence            46689999999999999999999999 7999999999999999999999999999999998 777655  5689999999


Q ss_pred             HHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCC
Q psy2733         214 VACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN  276 (644)
Q Consensus       214 ~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~  276 (644)
                      +|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.++++.|++.|++.+.++..|+
T Consensus       146 ~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            99999999999999999 899999999999999999999999999999999999988776653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=3e-19  Score=150.14  Aligned_cols=93  Identities=35%  Similarity=0.539  Sum_probs=82.6

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcC
Q psy2733         207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKK  286 (644)
Q Consensus       207 ~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~  286 (644)
                      +|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            478999999999999999999987 7899999999999999999999999999999999999999999999999999888


Q ss_pred             CcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCC
Q psy2733         287 NFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAP  331 (644)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gad  331 (644)
                      +                               .+++++|+++||+
T Consensus        80 ~-------------------------------~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 H-------------------------------LEVVKLLLEAGAY   93 (93)
T ss_dssp             C-------------------------------HHHHHHHHHTTCC
T ss_pred             C-------------------------------HHHHHHHHHcCCC
Confidence            8                               6799999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=2.4e-19  Score=189.69  Aligned_cols=142  Identities=25%  Similarity=0.238  Sum_probs=100.6

Q ss_pred             cHHHHHHHc-CCHHHHHHHHHCCCCCcccC--CCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccc
Q psy2733           2 TLLHILAYQ-GCVEELNILLARGACVYYPD--DAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKV   78 (644)
Q Consensus         2 TpLh~Aa~~-G~~e~vk~LL~~Ga~~n~~d--~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~   78 (644)
                      |+||+|+.. |+++++++|++.|++++..|  ..|.||||+|+..|+.++|++                           
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~---------------------------  253 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF---------------------------  253 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHH---------------------------
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHH---------------------------
Confidence            578888888 88888888888888888877  778888888888888888876                           


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy2733          79 QRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL  158 (644)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~L  158 (644)
                                                                    |+++|+++|..|..|+||||+|+..|+.+++++|
T Consensus       254 ----------------------------------------------LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~L  287 (368)
T 3jue_A          254 ----------------------------------------------LLQNGANVNQADSAGRGPLHHATILGHTGLACLF  287 (368)
T ss_dssp             ----------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ----------------------------------------------HHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence                                                          6777778888888888888888888888888888


Q ss_pred             hcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccC-CcCCCCCchHHHHHHh
Q psy2733         159 LSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLAT-VPKTSDGFTPLHVACF  217 (644)
Q Consensus       159 l~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~T~Lh~A~~  217 (644)
                      ++ .|++++..|..|.||||+|+..|+.+++++|+..+..... ...+..+.|+++.+..
T Consensus       288 L~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          288 LK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            88 6888888888888888888888888888888876643221 1122445566655543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=2.6e-19  Score=189.46  Aligned_cols=149  Identities=21%  Similarity=0.219  Sum_probs=114.8

Q ss_pred             ccCCCCCcHHHHHHHc-CCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHH
Q psy2733         168 LENSKGFNILNYAVLR-GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPL  246 (644)
Q Consensus       168 ~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL  246 (644)
                      ..+..+.|+||+|+.. |+.++++.|++.+++++....+..|.||||+|+..|+.+++++|+++ |+++|.+|..|+|||
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPL  272 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHH
Confidence            3344567899999999 99999999999998887644347899999999999999999999998 899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHH
Q psy2733         247 MAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLV  326 (644)
Q Consensus       247 ~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll  326 (644)
                      |+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++                               .+++++|+
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~-------------------------------~~iv~lLl  321 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN-------------------------------ADIVTLLR  321 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-------------------------------HHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCC-------------------------------HHHHHHHH
Confidence            99999999999999999999999999999999999999988                               67999998


Q ss_pred             HcC---CCCCCCCCCCCCcchhhhc
Q psy2733         327 KHG---APLSLENNNRQKPLDLILE  348 (644)
Q Consensus       327 ~~G---adi~~~n~~G~TpL~~A~~  348 (644)
                      .+|   ++....+..+.|+++++..
T Consensus       322 ~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          322 LAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHC---------------------
T ss_pred             HcCCCcccccccCCCCCCHHHHHHH
Confidence            876   4445667788888888763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=1.4e-19  Score=158.49  Aligned_cols=108  Identities=26%  Similarity=0.354  Sum_probs=87.9

Q ss_pred             CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHH
Q psy2733         204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLF  283 (644)
Q Consensus       204 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~  283 (644)
                      +|..|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            457788888888888888888888887 7888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcc
Q psy2733         284 IKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPL  343 (644)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL  343 (644)
                      ..++                               .+++++|+++|+++|.++..|.||-
T Consensus        84 ~~~~-------------------------------~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGH-------------------------------HEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTC-------------------------------HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCC-------------------------------HHHHHHHHHcCCCCCcCCccccccc
Confidence            8777                               6688888888888888888888773

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=1.2e-18  Score=146.45  Aligned_cols=90  Identities=38%  Similarity=0.544  Sum_probs=81.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++                             
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~-----------------------------   53 (93)
T 1n0q_A            3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL-----------------------------   53 (93)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH-----------------------------
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH-----------------------------
Confidence            689999999999999999999999999999999999999999999999887                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        54 --------------------------------------------Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~   89 (93)
T 1n0q_A           54 --------------------------------------------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE   89 (93)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------------------------------HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                                        778888888889899999999999999999999988


Q ss_pred             CCCC
Q psy2733         161 HPEV  164 (644)
Q Consensus       161 ~~~~  164 (644)
                       .|+
T Consensus        90 -~ga   92 (93)
T 1n0q_A           90 -AGA   92 (93)
T ss_dssp             -TTC
T ss_pred             -cCC
Confidence             554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=1.7e-18  Score=176.62  Aligned_cols=124  Identities=19%  Similarity=0.142  Sum_probs=110.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCC------cccCCCCCcHHHHHHhc---CCHHHHHHHhhccCCCccchhhhhhhhhc
Q psy2733           2 TLLHILAYQGCVEELNILLARGACV------YYPDDAGDTALHYAAFG---NKPDAIQINSHVSGANRSRKHIYKERHRT   72 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~------n~~d~~G~TpLh~Aa~~---g~~eiv~lL~~~a~~~~~~~~~~~~~~~~   72 (644)
                      ++|+.|+..|+++.++.+++.|+++      +..|..|+||||+|+..   |+.+++++                     
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~---------------------  190 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF---------------------  190 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHH---------------------
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHH---------------------
Confidence            4789999999999999999999984      44588899999999998   78888876                     


Q ss_pred             cccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q psy2733          73 VTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFE  152 (644)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~  152 (644)
                                                                          |+++|+++|.+|..|+||||+|+..|+.
T Consensus       191 ----------------------------------------------------Ll~~ga~in~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          191 ----------------------------------------------------LVQNSGNLDKQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             ----------------------------------------------------HHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ----------------------------------------------------HHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence                                                                7778888888999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCc
Q psy2733         153 EIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNL  199 (644)
Q Consensus       153 ~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  199 (644)
                      +++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.+++.
T Consensus       219 ~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          219 ECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999 79999999999999999999999999999999988754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.74  E-value=2.4e-18  Score=150.51  Aligned_cols=109  Identities=26%  Similarity=0.378  Sum_probs=86.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHH
Q psy2733         168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM  247 (644)
Q Consensus       168 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~  247 (644)
                      .+|..|.||||+|+..|+.++++.|++.++++..  .|..|+||||+|+..|+.+++++|++. |++++.+|..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA--RSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC--CCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHH
Confidence            3566777777777777777777777777666544  456788888888888888888888887 7888888889999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCcccCCCCcHH
Q psy2733         248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLL  279 (644)
Q Consensus       248 ~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~L  279 (644)
                      +|+..|+.+++++|+++|+++|.++..|.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999888888763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.64  E-value=7.5e-16  Score=133.67  Aligned_cols=83  Identities=23%  Similarity=0.208  Sum_probs=75.8

Q ss_pred             CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHH
Q psy2733         204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLF  283 (644)
Q Consensus       204 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~  283 (644)
                      .+.+|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            357899999999999999999999988 7999999999999999999999999999999999999999999999999999


Q ss_pred             HcCC
Q psy2733         284 IKKN  287 (644)
Q Consensus       284 ~~~~  287 (644)
                      ..++
T Consensus        99 ~~~~  102 (110)
T 2zgd_A           99 DNGN  102 (110)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            9988

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.64  E-value=7.2e-16  Score=133.79  Aligned_cols=67  Identities=28%  Similarity=0.470  Sum_probs=34.5

Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q psy2733         125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKI  192 (644)
Q Consensus       125 Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  192 (644)
                      |++.|+++|.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus        43 Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            344444444455555555555555555555555555 3555555555555555555555555555443

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.31  E-value=1.2e-12  Score=105.73  Aligned_cols=64  Identities=30%  Similarity=0.726  Sum_probs=55.5

Q ss_pred             HHHHHhhhhhhhcCcccccccCCcCeEEe-cCcc-cchhhhhcCCCCccccccccceEEEEEeeecCCC
Q psy2733         466 NYLESKISEIEEMNTCTICMERCRNTIFL-CGHG-TCDVCAKTLKFCHMCRKLIEQRINISRAFVSPDQ  532 (644)
Q Consensus       466 ~~l~~~~~~~~~~~~C~iC~~~~~~~~~~-CgH~-~C~~C~~~~~~Cp~Cr~~i~~~~~~~~~~~~~~~  532 (644)
                      +.+++++++++++..|+||++...+++++ |||. +|..|+..+..||+||.+|..++   +.|++++.
T Consensus         6 ~~l~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~---~i~~p~~~   71 (79)
T 2yho_A            6 RVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQ---HVYLPTHT   71 (79)
T ss_dssp             CTHHHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEE---ECBCTTCC
T ss_pred             HHHHHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeE---EEEeCcch
Confidence            45677777888889999999999999999 9996 89999999999999999999888   55665543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.20  E-value=4.9e-12  Score=100.98  Aligned_cols=56  Identities=36%  Similarity=0.821  Sum_probs=48.8

Q ss_pred             HHhhhhhhhcCcccccccCCcCeEEe-cCcc-cchhhhhcCCCCccccccccceEEEE
Q psy2733         469 ESKISEIEEMNTCTICMERCRNTIFL-CGHG-TCDVCAKTLKFCHMCRKLIEQRINIS  524 (644)
Q Consensus       469 ~~~~~~~~~~~~C~iC~~~~~~~~~~-CgH~-~C~~C~~~~~~Cp~Cr~~i~~~~~~~  524 (644)
                      +++.+.++++..|.||++...+++++ |||. +|..|+..+..||+||.+|..++++|
T Consensus        15 ~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~   72 (74)
T 4ic3_A           15 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL   72 (74)
T ss_dssp             HHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred             HHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence            34455666778899999999999999 9996 99999999999999999999888444

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=1.5e-11  Score=98.44  Aligned_cols=52  Identities=37%  Similarity=0.828  Sum_probs=45.7

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcc-cchhhhhcCCCCccccccccceEEEE
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHG-TCDVCAKTLKFCHMCRKLIEQRINIS  524 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~-~C~~C~~~~~~Cp~Cr~~i~~~~~~~  524 (644)
                      ++++++..|+||++...+++++ |||. +|..|+..+..||+||.+|..++++|
T Consensus        20 ~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~   73 (75)
T 2ecg_A           20 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF   73 (75)
T ss_dssp             HHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred             HcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence            3445556799999999999999 9997 99999999999999999999988554

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=1.9e-11  Score=95.53  Aligned_cols=49  Identities=31%  Similarity=0.805  Sum_probs=44.6

Q ss_pred             hcCcccccccCCcCeEEe-cCcc-cchhhhhcCCCCccccccccceEEEEE
Q psy2733         477 EMNTCTICMERCRNTIFL-CGHG-TCDVCAKTLKFCHMCRKLIEQRINISR  525 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~~~~-CgH~-~C~~C~~~~~~Cp~Cr~~i~~~~~~~~  525 (644)
                      +...|.||++.+++++|+ |||. +|..|+..+..||+||.+|..++++|+
T Consensus        14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence            457899999999999999 9995 899999999999999999999986653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.03  E-value=6e-11  Score=106.29  Aligned_cols=97  Identities=26%  Similarity=0.618  Sum_probs=71.9

Q ss_pred             cccccccccccce------EEecCCCccccchhhHHHh----hhhhccccceeeeeecCCCccCCCcccchhHHHHHHHH
Q psy2733         399 VECAVCSELGVAN------VLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYL  468 (644)
Q Consensus       399 ~~C~iC~d~~~~~------v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~l  468 (644)
                      ..|.||++.....      +...||||. .|.+|..+.    ..||.||+.+...-...                     
T Consensus         8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~---------------------   65 (133)
T 4ap4_A            8 VSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHP---------------------   65 (133)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTCEEE---------------------
T ss_pred             CCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCccccccc---------------------
Confidence            4699999864222      255599996 799999775    38999999886432110                     


Q ss_pred             HHhhhhhhhcCcccccccCCcCe-------EEe-cCcccchhhhhc----CCCCccccccccce
Q psy2733         469 ESKISEIEEMNTCTICMERCRNT-------IFL-CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       469 ~~~~~~~~~~~~C~iC~~~~~~~-------~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                         +...++...|.||++...+.       +.. |||.+|..|...    .+.||+||.++...
T Consensus        66 ---l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           66 ---IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             ---CBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             ---cccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence               11124456799999987764       777 999999999984    47999999999864

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.98  E-value=1.6e-10  Score=88.93  Aligned_cols=50  Identities=34%  Similarity=0.652  Sum_probs=42.0

Q ss_pred             hhcCcccccccCCcCeEE--e-cCcc-cchhhhhcCC----CCccccccccceEEEEE
Q psy2733         476 EEMNTCTICMERCRNTIF--L-CGHG-TCDVCAKTLK----FCHMCRKLIEQRINISR  525 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~--~-CgH~-~C~~C~~~~~----~Cp~Cr~~i~~~~~~~~  525 (644)
                      +....|.||++.+++.++  . |||. +|..|+..+.    +||+||++|...+++|.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred             CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence            344679999999998755  3 9995 8999999775    89999999999986664

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.89  E-value=3.9e-10  Score=87.01  Aligned_cols=50  Identities=34%  Similarity=0.656  Sum_probs=42.1

Q ss_pred             hhcCcccccccCCcCeEEe---cCcc-cchhhhhcCC----CCccccccccceEEEEE
Q psy2733         476 EEMNTCTICMERCRNTIFL---CGHG-TCDVCAKTLK----FCHMCRKLIEQRINISR  525 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~---CgH~-~C~~C~~~~~----~Cp~Cr~~i~~~~~~~~  525 (644)
                      +++..|.||++++++++++   |||. +|..|+..+.    .||+||++|...+++|.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   63 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF   63 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence            3456899999999999974   9996 7999999664    59999999998886653

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.79  E-value=2.5e-09  Score=110.55  Aligned_cols=57  Identities=33%  Similarity=0.871  Sum_probs=50.5

Q ss_pred             HHHhhhhhhhcCcccccccCCcCeEEe-cCcc-cchhhhhcCCCCccccccccceEEEE
Q psy2733         468 LESKISEIEEMNTCTICMERCRNTIFL-CGHG-TCDVCAKTLKFCHMCRKLIEQRINIS  524 (644)
Q Consensus       468 l~~~~~~~~~~~~C~iC~~~~~~~~~~-CgH~-~C~~C~~~~~~Cp~Cr~~i~~~~~~~  524 (644)
                      ++++++.++++..|+||++...+++++ |||. +|..|+..+..||+||.+|..++++|
T Consensus       285 ~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~  343 (345)
T 3t6p_A          285 LEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF  343 (345)
T ss_dssp             HHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred             HHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence            344566777788999999999999999 9996 99999999999999999999998555

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=1.6e-08  Score=79.45  Aligned_cols=49  Identities=24%  Similarity=0.744  Sum_probs=41.5

Q ss_pred             hhhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC----CCCccccccccceE
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL----KFCHMCRKLIEQRI  521 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~~~  521 (644)
                      +..+.+...|.||++...+ +.+ |||.+|..|....    ..||+||.++....
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            3445667889999999999 777 9999999999854    57999999999765

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.50  E-value=8.7e-08  Score=86.15  Aligned_cols=46  Identities=33%  Similarity=0.718  Sum_probs=39.9

Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhhc----CCCCccccccccce
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      ++++..|+||++...+++.+ |||.||..|+..    -..||+||.+|...
T Consensus        50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            45567899999999999999 999999999884    35799999999754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=4.9e-08  Score=76.02  Aligned_cols=48  Identities=29%  Similarity=0.809  Sum_probs=43.6

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeeecC
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTD  447 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~~~  447 (644)
                      ..|.||++.. ..+++.||||.+.|..|...+++||+||..|...+++-
T Consensus        16 ~~C~IC~~~~-~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~   63 (68)
T 2ea5_A           16 KDCVVCQNGT-VNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS   63 (68)
T ss_dssp             SCCSSSSSSC-CCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCC
T ss_pred             CCCCCcCcCC-CCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEee
Confidence            5699999998 67788899999999999999999999999999988764

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=3.8e-08  Score=78.02  Aligned_cols=48  Identities=23%  Similarity=0.755  Sum_probs=41.2

Q ss_pred             hhhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC-------CCCccccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-------KFCHMCRKLIEQ  519 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-------~~Cp~Cr~~i~~  519 (644)
                      .+++++...|+||++...+.+.+ |||.||..|....       ..||+||.++..
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            34566778999999999999999 9999999999853       279999999875

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=9.5e-08  Score=75.25  Aligned_cols=44  Identities=34%  Similarity=0.850  Sum_probs=38.8

Q ss_pred             hhcCcccccccCCcCeEEe-cCcccchhhhhcC----CCCccccccccc
Q psy2733         476 EEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL----KFCHMCRKLIEQ  519 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~  519 (644)
                      .+...|.||++...+.+.+ |||.||..|+...    ..||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            4456899999999999999 9999999999864    579999999885

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.39  E-value=1.3e-07  Score=72.48  Aligned_cols=47  Identities=26%  Similarity=0.600  Sum_probs=39.7

Q ss_pred             cccccccccccceEE--ecCCCccccchhhHHHhh----hhhccccceeeeeec
Q psy2733         399 VECAVCSELGVANVL--LKPCNHAVACEECSSRMK----KCIMCKTFIEMRVTT  446 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~--~~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~~~~~~  446 (644)
                      ..|.||++.. ....  +.||||.+.|.+|..+++    +||+||+.|++.+++
T Consensus         8 ~~C~IC~~~~-~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i   60 (63)
T 2vje_B            8 KPCSLCEKRP-RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV   60 (63)
T ss_dssp             SBCTTTSSSB-SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEE
T ss_pred             CCCcccCCcC-CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEE
Confidence            4699999986 4333  449999999999999998    999999999987754

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.37  E-value=1e-07  Score=71.17  Aligned_cols=44  Identities=20%  Similarity=0.507  Sum_probs=38.6

Q ss_pred             hhcCcccccccCCcCeEEe-cCcccchhhhhcC-CCCccccccccc
Q psy2733         476 EEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-KFCHMCRKLIEQ  519 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-~~Cp~Cr~~i~~  519 (644)
                      ++...|.||++...+.+.+ |||.+|..|.... ..||+||+++..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence            4557899999999999999 9999999999864 589999998873

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.35  E-value=1.1e-07  Score=76.58  Aligned_cols=47  Identities=30%  Similarity=0.697  Sum_probs=40.7

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhc-----------CCCCccccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----------LKFCHMCRKLIEQ  519 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----------~~~Cp~Cr~~i~~  519 (644)
                      +.++++..|+||++...+.+.+ |||.+|..|...           ...||+||.++..
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            4556778899999999999999 999999999984           3579999999874

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.35  E-value=2.3e-07  Score=81.76  Aligned_cols=48  Identities=29%  Similarity=0.610  Sum_probs=41.1

Q ss_pred             hhhhhhcCcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQ  519 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~  519 (644)
                      ...+++...|+||++...+.+.+ |||.||..|...     ...||+||.++..
T Consensus        46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            34556678899999999999999 999999999973     3489999999975

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.34  E-value=6.2e-08  Score=77.55  Aligned_cols=51  Identities=27%  Similarity=0.678  Sum_probs=40.0

Q ss_pred             hhhhhcCcccccccCC--cCeEEe---cCcccchhhhhcC-----CCCccccccccceEEE
Q psy2733         473 SEIEEMNTCTICMERC--RNTIFL---CGHGTCDVCAKTL-----KFCHMCRKLIEQRINI  523 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~--~~~~~~---CgH~~C~~C~~~~-----~~Cp~Cr~~i~~~~~~  523 (644)
                      +.++++..|+||++..  .++++.   |||.+|..|...+     ..||.||+++....-+
T Consensus         6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~   66 (78)
T 1e4u_A            6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV   66 (78)
T ss_dssp             CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred             cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence            3456778999999977  344554   9999999999865     3799999999986533

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=1.6e-07  Score=74.18  Aligned_cols=49  Identities=24%  Similarity=0.555  Sum_probs=41.1

Q ss_pred             hhhhhhcCcccccccCCcCeEEe--cCcccchhhhhc----CCCCccccccccce
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      ++++++...|+||++...+.+.+  |||.||..|...    ...||+||.++...
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            45567778999999999987764  999999999974    46899999999864

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.33  E-value=2.2e-07  Score=71.38  Aligned_cols=47  Identities=32%  Similarity=0.656  Sum_probs=40.4

Q ss_pred             cccccccccccceEEec--CCCccccchhhHHHhhh----hhccccceeeeeec
Q psy2733         399 VECAVCSELGVANVLLK--PCNHAVACEECSSRMKK----CIMCKTFIEMRVTT  446 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~--PC~h~~~C~~C~~~~~~----Cp~Cr~~i~~~~~~  446 (644)
                      .+|.||++.. ....+.  ||||.+.|.+|..++..    ||+||+.|+..+++
T Consensus         9 ~~C~IC~~~~-~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i   61 (64)
T 2vje_A            9 EPCVICQGRP-KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLT   61 (64)
T ss_dssp             SCCTTTSSSC-SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEE
T ss_pred             CCCCcCCCCC-CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEee
Confidence            4699999988 555665  99999999999999875    99999999987753

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.32  E-value=3.2e-07  Score=71.45  Aligned_cols=45  Identities=31%  Similarity=0.695  Sum_probs=38.2

Q ss_pred             hcCcccccccCCcCe-EEe-cCcccchhhhhc----CCCCccccccccceE
Q psy2733         477 EMNTCTICMERCRNT-IFL-CGHGTCDVCAKT----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~-~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~~  521 (644)
                      ++..|+||++...+. +.+ |||.+|..|...    -..||+||.++...+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   54 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhh
Confidence            446799999999984 667 999999999974    468999999999765

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.29  E-value=1.9e-07  Score=78.87  Aligned_cols=48  Identities=29%  Similarity=0.672  Sum_probs=41.2

Q ss_pred             hhhhhhcCcccccccCCcCeEE-e-cCcccchhhhhcC-----CCCccccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIF-L-CGHGTCDVCAKTL-----KFCHMCRKLIEQ  519 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~-~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~  519 (644)
                      ...++++..|+||++...+.+. + |||.||..|....     ..||+||.++..
T Consensus        16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            4456677889999999999999 7 9999999999842     589999999864

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.28  E-value=2.9e-07  Score=75.06  Aligned_cols=47  Identities=30%  Similarity=0.631  Sum_probs=40.8

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhc----------CCCCccccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT----------LKFCHMCRKLIEQ  519 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----------~~~Cp~Cr~~i~~  519 (644)
                      +++++...|+||++...+.+.+ |||.+|..|...          ...||+||.++..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            4456678899999999999999 999999999874          5689999999875

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=1.9e-07  Score=72.33  Aligned_cols=47  Identities=23%  Similarity=0.554  Sum_probs=40.1

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQ  519 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~  519 (644)
                      ..+.++..|+||++...+.+.+ |||.+|..|...     ...||+||.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            3455667899999999999999 999999999983     3579999999875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.27  E-value=4.4e-07  Score=78.32  Aligned_cols=54  Identities=24%  Similarity=0.657  Sum_probs=44.0

Q ss_pred             HHHHHhhhhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC-------CCCccccccccc
Q psy2733         466 NYLESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-------KFCHMCRKLIEQ  519 (644)
Q Consensus       466 ~~l~~~~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-------~~Cp~Cr~~i~~  519 (644)
                      +.++.....+.+...|+||++...+.+.+ |||.+|..|....       ..||+||.++..
T Consensus         9 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A            9 EEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             HHHHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            34444555667778999999999999999 9999999998742       379999998874

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=1.8e-07  Score=73.11  Aligned_cols=45  Identities=31%  Similarity=0.733  Sum_probs=37.8

Q ss_pred             hhhcCcccccccCCcCe-------EEe-cCcccchhhhhcC----CCCccccccccc
Q psy2733         475 IEEMNTCTICMERCRNT-------IFL-CGHGTCDVCAKTL----KFCHMCRKLIEQ  519 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~-------~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~  519 (644)
                      ..+...|.||++...+.       +.+ |||.||..|....    ..||+||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            45667899999988775       777 9999999999853    589999999875

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=2.2e-07  Score=76.42  Aligned_cols=47  Identities=34%  Similarity=0.812  Sum_probs=39.8

Q ss_pred             hhhhhcCcccccccCCcC----eEEe-cCcccchhhhhcC-------CCCccccccccc
Q psy2733         473 SEIEEMNTCTICMERCRN----TIFL-CGHGTCDVCAKTL-------KFCHMCRKLIEQ  519 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~----~~~~-CgH~~C~~C~~~~-------~~Cp~Cr~~i~~  519 (644)
                      +.+++...|+||++...+    .+.+ |||.+|..|....       ..||+||.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            345666889999999998    8888 9999999999843       589999998764

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.26  E-value=3.9e-07  Score=73.18  Aligned_cols=47  Identities=32%  Similarity=0.777  Sum_probs=42.4

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeeecC
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTD  447 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~~~  447 (644)
                      .|.||++.. ..+.+.||||.+.|..|...++.||+||+.|...+++-
T Consensus        20 ~C~IC~~~~-~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~   66 (79)
T 2yho_A           20 LCMVCCEEE-INSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY   66 (79)
T ss_dssp             BCTTTSSSB-CCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred             EeEEeCccc-CcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence            599999998 66777799999999999999999999999999988754

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=3e-07  Score=74.95  Aligned_cols=47  Identities=32%  Similarity=0.749  Sum_probs=41.0

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhc----------CCCCccccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT----------LKFCHMCRKLIEQ  519 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----------~~~Cp~Cr~~i~~  519 (644)
                      .++++...|+||++...+.+.+ |||.+|..|...          ...||+||.++..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            4556678999999999999999 999999999874          5689999999885

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=3.8e-07  Score=73.77  Aligned_cols=45  Identities=27%  Similarity=0.538  Sum_probs=39.0

Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhhcC----CCCccccccccc
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL----KFCHMCRKLIEQ  519 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~~  519 (644)
                      .++...|+||++...+.+.+ |||.||..|....    ..||+||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG   61 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred             CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence            34557899999999999999 9999999999753    579999999974

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.22  E-value=4.2e-07  Score=67.45  Aligned_cols=42  Identities=26%  Similarity=0.616  Sum_probs=35.3

Q ss_pred             hcCcccccccCCcC----eEEe-cCcccchhhhhcC----CCCcccccccc
Q psy2733         477 EMNTCTICMERCRN----TIFL-CGHGTCDVCAKTL----KFCHMCRKLIE  518 (644)
Q Consensus       477 ~~~~C~iC~~~~~~----~~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~  518 (644)
                      ++..|.||++...+    ++.+ |||.+|..|....    ..||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            34679999998765    7777 9999999999853    68999999875

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.21  E-value=2.4e-07  Score=71.54  Aligned_cols=43  Identities=28%  Similarity=0.720  Sum_probs=34.0

Q ss_pred             cCccccccc-CCcCe----EEe-cCcccchhhhhcC-----CCCccccccccce
Q psy2733         478 MNTCTICME-RCRNT----IFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQR  520 (644)
Q Consensus       478 ~~~C~iC~~-~~~~~----~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~~  520 (644)
                      +..|+||++ ...+.    +.+ |||.+|..|....     ..||+||+++...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            467999999 43333    456 9999999998854     5799999999863

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.21  E-value=2.9e-07  Score=70.68  Aligned_cols=43  Identities=35%  Similarity=0.858  Sum_probs=36.1

Q ss_pred             cCcccccccCCcCe-------EEe-cCcccchhhhhc----CCCCccccccccce
Q psy2733         478 MNTCTICMERCRNT-------IFL-CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       478 ~~~C~iC~~~~~~~-------~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      +..|+||++...+.       +.. |||.+|..|...    -..||+||.++...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            46799999987764       777 999999999984    35899999999863

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.19  E-value=1e-06  Score=91.38  Aligned_cols=45  Identities=29%  Similarity=0.628  Sum_probs=40.1

Q ss_pred             hcCcccccccCCcCeEEe-cCcccchhhhh-----cCCCCccccccccceE
Q psy2733         477 EMNTCTICMERCRNTIFL-CGHGTCDVCAK-----TLKFCHMCRKLIEQRI  521 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~-----~~~~Cp~Cr~~i~~~~  521 (644)
                      ....|+||++...+++++ |||.+|..|..     ....||+||.++....
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            346899999999999999 99999999997     3578999999999865

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.16  E-value=7.5e-07  Score=70.67  Aligned_cols=47  Identities=26%  Similarity=0.627  Sum_probs=38.8

Q ss_pred             hhhhhhcCcccccccCCcCeEEe--cCcccchhhhhcC------CCCcccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKTL------KFCHMCRKLIE  518 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~------~~Cp~Cr~~i~  518 (644)
                      .+.+.++..|+||++...+.+.+  |||.||..|....      ..||+||+++.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            34566778899999999998877  9999999999742      48999999643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.14  E-value=9.3e-07  Score=80.42  Aligned_cols=48  Identities=25%  Similarity=0.542  Sum_probs=40.8

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC-----CCCccccccccce
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQR  520 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~~  520 (644)
                      ..+.+...|+||++...+.+.+ |||.||..|....     ..||+||.++...
T Consensus        73 ~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           73 KKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             HhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            3455668899999999999999 9999999999843     3799999998854

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.13  E-value=1.1e-06  Score=70.53  Aligned_cols=45  Identities=16%  Similarity=0.314  Sum_probs=39.4

Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccc
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQ  519 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~  519 (644)
                      +.++..|+||++...+.+.+ |||.||..|...     ...||+||.++..
T Consensus         5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            45678999999999999999 999999999873     4579999999874

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.13  E-value=4.7e-07  Score=71.11  Aligned_cols=45  Identities=31%  Similarity=0.779  Sum_probs=37.5

Q ss_pred             hhcCcccccccCCcCe-------EEe-cCcccchhhhhc----CCCCccccccccce
Q psy2733         476 EEMNTCTICMERCRNT-------IFL-CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~-------~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      +++..|.||++...+.       +.+ |||.+|..|...    -..||+||.++...
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            4567899999988775       777 999999999974    36899999998853

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.11  E-value=1.3e-06  Score=73.47  Aligned_cols=48  Identities=23%  Similarity=0.724  Sum_probs=40.0

Q ss_pred             hhhhhhcCcccccccCCcCeEEe--cCcccchhhhhc----CCCCccccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      ++.+++...|+||++...+.+.+  |||.||..|...    -..||+||.++..
T Consensus        16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            44556677899999999998776  999999999874    3589999999874

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=7.7e-07  Score=70.79  Aligned_cols=46  Identities=30%  Similarity=0.855  Sum_probs=40.5

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeeec
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTT  446 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~~  446 (644)
                      .|.||++.. ....+.||||.+.|..|....+.||+||..|..++++
T Consensus        27 ~C~IC~~~~-~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i   72 (75)
T 2ecg_A           27 LCKICMDRN-IAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI   72 (75)
T ss_dssp             SCSSSCSSC-CCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBC
T ss_pred             CCCcCCCCC-CCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEE
Confidence            599999987 6667779999989999999999999999999887653

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.10  E-value=1e-06  Score=69.87  Aligned_cols=46  Identities=30%  Similarity=0.855  Sum_probs=40.8

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeeec
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTT  446 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~~  446 (644)
                      .|.||++.. ....+.||||.+.|..|....+.||+||+.|..++++
T Consensus        26 ~C~iC~~~~-~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i   71 (74)
T 4ic3_A           26 LCKICMDRN-IAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI   71 (74)
T ss_dssp             BCTTTSSSB-CCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEEC
T ss_pred             CCCCCCCCC-CCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEE
Confidence            599999998 5566669999999999999999999999999988754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.10  E-value=1.4e-06  Score=64.64  Aligned_cols=44  Identities=23%  Similarity=0.707  Sum_probs=35.5

Q ss_pred             hhhcCcccccccCCcC----eEEe-cCcccchhhhhc----CCCCcccccccc
Q psy2733         475 IEEMNTCTICMERCRN----TIFL-CGHGTCDVCAKT----LKFCHMCRKLIE  518 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~----~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~  518 (644)
                      +++...|.||++...+    ..+. |||.+|..|...    -..||+||.++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            3556789999999877    4455 999999999985    358999999874

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.08  E-value=1.2e-06  Score=74.96  Aligned_cols=48  Identities=23%  Similarity=0.645  Sum_probs=41.4

Q ss_pred             hhhhhhcCcccccccCCcCeEEe--cCcccchhhhhcC----CCCccccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKTL----KFCHMCRKLIEQ  519 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~----~~Cp~Cr~~i~~  519 (644)
                      ++.++++..|+||++...+.+.+  |||.||..|....    ..||+||.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A            9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            45667788999999999998885  9999999999843    689999999875

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.08  E-value=9.7e-07  Score=76.56  Aligned_cols=45  Identities=29%  Similarity=0.678  Sum_probs=39.1

Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhhcC-----CCCccccccccc
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQ  519 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~  519 (644)
                      ..++..|+||++...+.+.+ |||.||..|....     ..||+||.++..
T Consensus        12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            34456799999999999999 9999999999864     379999999975

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.08  E-value=4.2e-07  Score=78.73  Aligned_cols=56  Identities=18%  Similarity=0.428  Sum_probs=39.0

Q ss_pred             HHHHHHHHhhhhhhhcCcccccccCCcC------------------eEEe-cCcccchhhhhc---------CCCCcccc
Q psy2733         463 ERVNYLESKISEIEEMNTCTICMERCRN------------------TIFL-CGHGTCDVCAKT---------LKFCHMCR  514 (644)
Q Consensus       463 ~~~~~l~~~~~~~~~~~~C~iC~~~~~~------------------~~~~-CgH~~C~~C~~~---------~~~Cp~Cr  514 (644)
                      +.+++..+..... .+..|.||++....                  ++++ |||.||..|...         -..||+||
T Consensus        11 ~~i~~~~~~~~~~-~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR   89 (114)
T 1v87_A           11 QVIRKYTEELKVA-PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK   89 (114)
T ss_dssp             HHHHHHEEECSSC-CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTC
T ss_pred             HHHHHHHHhccCC-CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCC
Confidence            4444444443333 33589999998744                  2367 999999999873         24799999


Q ss_pred             ccccc
Q psy2733         515 KLIEQ  519 (644)
Q Consensus       515 ~~i~~  519 (644)
                      ..+..
T Consensus        90 ~~~~~   94 (114)
T 1v87_A           90 TIYGE   94 (114)
T ss_dssp             CBSSS
T ss_pred             CccCC
Confidence            98874

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.08  E-value=1.7e-06  Score=75.30  Aligned_cols=47  Identities=23%  Similarity=0.573  Sum_probs=40.3

Q ss_pred             hhhhhhcCcccccccCCcCeEEe--cCcccchhhhhcC--CCCcccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKTL--KFCHMCRKLIE  518 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~--~~Cp~Cr~~i~  518 (644)
                      ++.+++...|+||++...+.+.+  |||.||..|....  ..||+||.++.
T Consensus        16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~   66 (117)
T 1jm7_B           16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW   66 (117)
T ss_dssp             HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred             HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence            44556778899999999998876  9999999999975  57999999974

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.08  E-value=1.3e-06  Score=68.19  Aligned_cols=47  Identities=32%  Similarity=0.589  Sum_probs=37.2

Q ss_pred             hhhcCcccccccCC---cCeEEe-cCcccchhhhhc----CCCCccccccccceE
Q psy2733         475 IEEMNTCTICMERC---RNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       475 ~~~~~~C~iC~~~~---~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~~  521 (644)
                      .++...|.||++..   ..++.+ |||.||..|...    -..||+||.++...+
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            34557899998765   456777 999999999984    357999999998654

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.03  E-value=9.6e-07  Score=73.25  Aligned_cols=46  Identities=26%  Similarity=0.668  Sum_probs=38.7

Q ss_pred             hhhhhcCcccccccCCcCeEEe--cCcccchhhhhcC------CCCcccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKTL------KFCHMCRKLIE  518 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~------~~Cp~Cr~~i~  518 (644)
                      ..+.++..|+||++...+.+.+  |||.||..|....      ..||+||.++.
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3556778999999999998887  8999999999742      48999999863

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.02  E-value=1.7e-06  Score=71.66  Aligned_cols=44  Identities=23%  Similarity=0.477  Sum_probs=36.5

Q ss_pred             hhcCcccccccCCcC---eEEe-cCcccchhhhhc----CCCCccccccccc
Q psy2733         476 EEMNTCTICMERCRN---TIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~---~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      +++..|.||++....   ++.+ |||.||..|...    -..||+||.++..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            445789999988776   7778 999999999984    3589999998875

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.01  E-value=1.1e-06  Score=65.94  Aligned_cols=41  Identities=24%  Similarity=0.852  Sum_probs=35.0

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC-------CCCccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-------KFCHMC  513 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-------~~Cp~C  513 (644)
                      +.+++...|.||++...+.+.+ |||.||..|....       ..||+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3456678899999999999999 9999999998743       479998

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=2.2e-06  Score=65.48  Aligned_cols=42  Identities=26%  Similarity=0.818  Sum_probs=35.9

Q ss_pred             hhhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC-------CCCccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-------KFCHMC  513 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-------~~Cp~C  513 (644)
                      .+.++++..|+||++...+.+.+ |||.||..|....       ..||+|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34567778999999999999999 9999999998742       379998

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=1.4e-06  Score=68.94  Aligned_cols=49  Identities=22%  Similarity=0.506  Sum_probs=38.1

Q ss_pred             hhhhhcCcccccccCCc---CeEEe-cCcccchhhhhc----CCCCccccccccceE
Q psy2733         473 SEIEEMNTCTICMERCR---NTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~---~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~~  521 (644)
                      .++.+...|.||++...   .++.+ |||.||..|...    -..||+||.++....
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            44556678999998853   45566 999999999984    358999999987643

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=97.99  E-value=1.8e-06  Score=75.29  Aligned_cols=48  Identities=23%  Similarity=0.603  Sum_probs=41.2

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC-----CCCccccccccce
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQR  520 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~~  520 (644)
                      ..+++...|+||++...+.+.+ |||.||..|....     ..||+||.++...
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            3556678899999999999999 9999999999743     4899999998763

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.98  E-value=3.1e-06  Score=67.70  Aligned_cols=46  Identities=26%  Similarity=0.536  Sum_probs=36.2

Q ss_pred             hhhcCcccccccCCc---CeEEe-cCcccchhhhhc----CCCCccccccccce
Q psy2733         475 IEEMNTCTICMERCR---NTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~---~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      ..+...|.||++...   .++.+ |||.||..|...    -..||+||.++...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            455678999977654   44666 999999999984    36899999998863

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=2.3e-06  Score=68.01  Aligned_cols=44  Identities=25%  Similarity=0.555  Sum_probs=35.3

Q ss_pred             hhcCcccccccCCcC---eEEe-cCcccchhhhhc----CCCCccccccccc
Q psy2733         476 EEMNTCTICMERCRN---TIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~---~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      .+...|.||++....   ++.+ |||.||..|...    -..||+||.++..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            445689999977654   3667 999999999984    3589999998864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=97.92  E-value=4.4e-06  Score=72.48  Aligned_cols=46  Identities=22%  Similarity=0.494  Sum_probs=39.7

Q ss_pred             hhhhcCcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccc
Q psy2733         474 EIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQ  519 (644)
Q Consensus       474 ~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~  519 (644)
                      ++.++..|+||++...+.+.+ |||.||..|...     -..||+||.++..
T Consensus        19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            345567899999999999999 999999999873     3589999999875

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=97.88  E-value=3.5e-06  Score=68.65  Aligned_cols=48  Identities=8%  Similarity=-0.020  Sum_probs=41.4

Q ss_pred             hhhhhhcCcccccccCCcCeEEe-cCcccchhhhhc----CCCCccccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      +..+.++..|+||++...+.|.+ |||.||..|+..    ...||+||.++..
T Consensus         8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            34556778999999999999999 999999999874    3689999998874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=97.87  E-value=2e-06  Score=77.37  Aligned_cols=46  Identities=24%  Similarity=0.600  Sum_probs=40.0

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC-----CCCcccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIE  518 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~  518 (644)
                      ..++++..|+||++...+.+.+ |||.||..|....     ..||+||.++.
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            4567778999999999999999 9999999999853     37999999863

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=97.85  E-value=4.9e-06  Score=69.92  Aligned_cols=48  Identities=8%  Similarity=-0.057  Sum_probs=41.2

Q ss_pred             hhhhhhcCcccccccCCcCeEEe-cCcccchhhhhc----CCCCccccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      ...+.++..|+||++...+.|.+ |||.||..|+..    ...||+||.++..
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            34556678999999999999999 999999999984    3589999998774

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.83  E-value=6.1e-06  Score=76.44  Aligned_cols=46  Identities=33%  Similarity=0.647  Sum_probs=38.5

Q ss_pred             hhhhcCcccccccCCcCeEEe--cCcccchhhhhc-----CCCCccccccccc
Q psy2733         474 EIEEMNTCTICMERCRNTIFL--CGHGTCDVCAKT-----LKFCHMCRKLIEQ  519 (644)
Q Consensus       474 ~~~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~-----~~~Cp~Cr~~i~~  519 (644)
                      .+.+...|+||++...+.+.+  |||.||..|...     -..||+||.++..
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            345567899999999998876  999999999984     3579999999864

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=97.77  E-value=7.1e-06  Score=68.68  Aligned_cols=47  Identities=6%  Similarity=-0.104  Sum_probs=40.7

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cC-cccchhhhhc----CCCCccccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CG-HGTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-Cg-H~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      ..+.++..|+||++...+.|.+ || |.||..|+..    ...||+||.++..
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            4556778999999999999999 99 9999999984    3579999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.57  E-value=4e-05  Score=61.72  Aligned_cols=43  Identities=21%  Similarity=0.569  Sum_probs=33.1

Q ss_pred             cCcccccccCCcC---------------eEEe-cCcccchhhhhc----CCCCccccccccce
Q psy2733         478 MNTCTICMERCRN---------------TIFL-CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       478 ~~~C~iC~~~~~~---------------~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      +..|.||++...+               +++. |||.|+..|...    -..||+||+++...
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            3468888887754               3556 999999999984    35899999997643

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.57  E-value=2.5e-05  Score=72.59  Aligned_cols=47  Identities=23%  Similarity=0.614  Sum_probs=41.1

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCcccchhhhhcC-----CCCccccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQ  519 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~  519 (644)
                      ..+++...|+||++...+.+.+ |||.||..|....     ..||+||.++..
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            4566778999999999999999 9999999999853     489999999876

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.53  E-value=2.1e-05  Score=69.66  Aligned_cols=45  Identities=31%  Similarity=0.779  Sum_probs=37.8

Q ss_pred             hhcCcccccccCCcCe-------EEe-cCcccchhhhhc----CCCCccccccccce
Q psy2733         476 EEMNTCTICMERCRNT-------IFL-CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~-------~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      .++..|.||++...+.       +.+ |||.||..|...    -..||+||+++...
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   61 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence            3456899999998776       788 999999999974    35899999999864

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.49  E-value=2.9e-05  Score=80.15  Aligned_cols=47  Identities=36%  Similarity=0.902  Sum_probs=41.5

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhhhhhccccceeeeeec
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTT  446 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~~Cp~Cr~~i~~~~~~  446 (644)
                      ..|.||++.. ....+.||||.+.|..|....+.||.||..|..++++
T Consensus       296 ~~C~IC~~~~-~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i  342 (345)
T 3t6p_A          296 RTCKVCMDKE-VSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRT  342 (345)
T ss_dssp             CBCTTTSSSB-CCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCCcC-CceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEe
Confidence            3599999998 5566669999999999999999999999999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.34  E-value=7.8e-05  Score=75.06  Aligned_cols=43  Identities=16%  Similarity=0.101  Sum_probs=37.4

Q ss_pred             hcCcccccccCCcCeEEe-cCcccchhhhhcC-----CCCccccccccc
Q psy2733         477 EMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQ  519 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~  519 (644)
                      +...|+||++...+.|.+ |||.||..|+...     ..||+||.+++.
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            457899999999999999 9999999998832     349999999874

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=97.22  E-value=0.00026  Score=65.57  Aligned_cols=45  Identities=18%  Similarity=0.113  Sum_probs=38.4

Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhhcC-----CCCccccccccc
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQ  519 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~  519 (644)
                      +.+...|+||++...+.|.+ |||.||..|+...     ..||+||.++..
T Consensus       103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            34558999999999999999 9999999998732     259999998875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.11  E-value=0.00025  Score=60.03  Aligned_cols=40  Identities=20%  Similarity=0.487  Sum_probs=32.1

Q ss_pred             CcccccccCCcC------------------eEEe-cCcccchhhhhc----CCCCcccccccc
Q psy2733         479 NTCTICMERCRN------------------TIFL-CGHGTCDVCAKT----LKFCHMCRKLIE  518 (644)
Q Consensus       479 ~~C~iC~~~~~~------------------~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~  518 (644)
                      ..|.||++....                  ++.+ |||.|+..|+..    -..||+||.+..
T Consensus        38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            579999887653                  4556 999999999984    358999999854

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.06  E-value=0.00017  Score=59.71  Aligned_cols=43  Identities=23%  Similarity=0.474  Sum_probs=36.1

Q ss_pred             hhcCcccccccCCcCeEEe--cCcccchhhhhcC----------CCCcc--cccc-cc
Q psy2733         476 EEMNTCTICMERCRNTIFL--CGHGTCDVCAKTL----------KFCHM--CRKL-IE  518 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~----------~~Cp~--Cr~~-i~  518 (644)
                      .++..|+||++...+.|.+  |||.||..|+...          ..||+  |+.. +.
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence            4567899999999999987  9999999998732          38999  9866 54

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.00026  Score=68.90  Aligned_cols=46  Identities=15%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             hhhhcCcccccccCCcCeEE-e-cCcccchhhhhcC------CCCcc--ccccccc
Q psy2733         474 EIEEMNTCTICMERCRNTIF-L-CGHGTCDVCAKTL------KFCHM--CRKLIEQ  519 (644)
Q Consensus       474 ~~~~~~~C~iC~~~~~~~~~-~-CgH~~C~~C~~~~------~~Cp~--Cr~~i~~  519 (644)
                      ....+..|+||++...+.|. . |||.||..|+...      ..||+  ||+.+..
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            34566899999999999997 4 9999999999843      26999  9998764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.84  E-value=0.00097  Score=54.39  Aligned_cols=51  Identities=24%  Similarity=0.448  Sum_probs=36.7

Q ss_pred             cccccccCCcCeE-Ee-cCcccchhhhh-----cCCCCccccccccceEEEEE--eeecC
Q psy2733         480 TCTICMERCRNTI-FL-CGHGTCDVCAK-----TLKFCHMCRKLIEQRINISR--AFVSP  530 (644)
Q Consensus       480 ~C~iC~~~~~~~~-~~-CgH~~C~~C~~-----~~~~Cp~Cr~~i~~~~~~~~--~~~~~  530 (644)
                      .|.+|--...... .. |+|++|.+|+.     .-+.||+||.+|.+.-+..+  .|+-.
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~if~C~   62 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCS   62 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGGCCCCC
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCCEEECC
Confidence            5777866655543 44 99999999995     45789999999997665433  44444

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=96.55  E-value=0.0014  Score=50.32  Aligned_cols=46  Identities=33%  Similarity=0.646  Sum_probs=37.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----hhhhccccceeeeee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRVT  445 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~~  445 (644)
                      ..|.||.+.....+...||||. .|..|....    ..||.||..+...+.
T Consensus         6 ~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   55 (68)
T 1chc_A            6 ERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence            4699999986444567799999 799999764    379999999987654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.52  E-value=0.0004  Score=59.68  Aligned_cols=40  Identities=20%  Similarity=0.487  Sum_probs=0.0

Q ss_pred             CcccccccCCcC------------------eEEe-cCcccchhhhhc----CCCCcccccccc
Q psy2733         479 NTCTICMERCRN------------------TIFL-CGHGTCDVCAKT----LKFCHMCRKLIE  518 (644)
Q Consensus       479 ~~C~iC~~~~~~------------------~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~  518 (644)
                      ..|.||++...+                  ++.. |||.|+..|+..    -..||+||.+..
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            479999887654                  3445 999999999985    357999999853

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.49  E-value=0.001  Score=51.79  Aligned_cols=43  Identities=30%  Similarity=0.723  Sum_probs=34.7

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----hhhhccccceeee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMR  443 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~  443 (644)
                      ..|.||++.. ......||||. .|..|....    ..||+||..+...
T Consensus        16 ~~C~IC~~~~-~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           16 PECAICLQTC-VHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             CBCSSSSSBC-SSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCccCCccc-CCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            5699999987 44445599999 799999875    4799999998753

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=96.48  E-value=0.0012  Score=58.90  Aligned_cols=43  Identities=26%  Similarity=0.675  Sum_probs=34.1

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh----hhhhccccceeeee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRV  444 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~  444 (644)
                      .|.||.+.. ......||||. .|..|....    ..||.||..+....
T Consensus        55 ~C~iC~~~~-~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           55 QCIICSEYF-IEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             BCTTTCSBC-SSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             CCcccCccc-CCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            499999987 44455599995 799999765    37999999986543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.45  E-value=0.0013  Score=51.39  Aligned_cols=42  Identities=29%  Similarity=0.730  Sum_probs=33.9

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhh-------hhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMK-------KCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-------~Cp~Cr~~i~~  442 (644)
                      ..|.||.+... .....||||. .|..|.....       .||+||+.+..
T Consensus        21 ~~C~IC~~~~~-~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           21 VICPICLDILQ-KPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CBCTTTCSBCS-SEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             CEeccCCcccC-CeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            56999999874 4444599999 6999998764       69999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.44  E-value=0.0008  Score=55.63  Aligned_cols=40  Identities=23%  Similarity=0.536  Sum_probs=30.5

Q ss_pred             hcCcccccccCCcCe---EEe-cCcccchhhhhc------------CCCCcc--cccc
Q psy2733         477 EMNTCTICMERCRNT---IFL-CGHGTCDVCAKT------------LKFCHM--CRKL  516 (644)
Q Consensus       477 ~~~~C~iC~~~~~~~---~~~-CgH~~C~~C~~~------------~~~Cp~--Cr~~  516 (644)
                      +...|.||++.....   .+. |||.||..|...            ...||.  ||..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            356799999886653   234 999999999761            137999  9988

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.15  E-value=0.0016  Score=50.41  Aligned_cols=43  Identities=26%  Similarity=0.787  Sum_probs=34.9

Q ss_pred             ccccccccccccceEEecCCCccccchhhHHHh----hhhhccccceeee
Q psy2733         398 PVECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMR  443 (644)
Q Consensus       398 ~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~  443 (644)
                      ...|.||++....  ...||||. .|..|....    ..||.||..+...
T Consensus        15 ~~~C~IC~~~~~~--~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           15 EEECCICMDGRAD--LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCSSSCCSCCS--EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCeeCCcCccC--cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            3569999998744  55599999 799999875    4799999988754

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.12  E-value=0.0039  Score=48.50  Aligned_cols=45  Identities=20%  Similarity=0.648  Sum_probs=35.6

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----hhhhccccceeeee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRV  444 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~  444 (644)
                      ..|.||.+.....+.+.||||. .|..|....    ..||.||..+...-
T Consensus        16 ~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           16 ILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             GSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            5699999987455555699997 599999665    37999999987643

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.10  E-value=0.0021  Score=49.34  Aligned_cols=44  Identities=23%  Similarity=0.620  Sum_probs=33.3

Q ss_pred             ccccccccccccc------eEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         398 PVECAVCSELGVA------NVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       398 ~~~C~iC~d~~~~------~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      ...|.||++....      .+...||||. .|..|....    ..||+||..+..
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           15 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence            3569999986422      1255699996 799999775    379999998865

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.07  E-value=0.0028  Score=48.21  Aligned_cols=42  Identities=24%  Similarity=0.655  Sum_probs=31.9

Q ss_pred             ccccccc-c---ccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         400 ECAVCSE-L---GVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d-~---~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      .|.||.+ .   +...+...||||. .|.+|..+.     ..||.||..+..
T Consensus         5 ~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            5 GCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             cCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            5999999 3   3222245699998 699999887     369999998865

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=96.04  E-value=0.0028  Score=46.25  Aligned_cols=42  Identities=24%  Similarity=0.524  Sum_probs=32.7

Q ss_pred             cccccccccccc---eEEecCCCccccchhhHHHh----hhhhcccccee
Q psy2733         399 VECAVCSELGVA---NVLLKPCNHAVACEECSSRM----KKCIMCKTFIE  441 (644)
Q Consensus       399 ~~C~iC~d~~~~---~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~  441 (644)
                      ..|.||++....   .+...||+|. .|..|....    ..||+||..+.
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            6 SGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence            469999986422   3677799996 799999776    37999998764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=96.01  E-value=0.0026  Score=65.92  Aligned_cols=46  Identities=26%  Similarity=0.705  Sum_probs=37.8

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceeeeeec
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEMRVTT  446 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~~~~~  446 (644)
                      ..|.||.+.. ......||||.. |..|....     ..||.||+.+.....+
T Consensus       333 ~~C~ICle~~-~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          333 QLCKICAEND-KDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SBCTTTSSSB-CCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCcCC-CCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            5799999987 556667999995 99999754     5799999999886644

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.96  E-value=0.0042  Score=49.57  Aligned_cols=43  Identities=26%  Similarity=0.668  Sum_probs=33.9

Q ss_pred             ccccccccccccceEEecCCCccccchhhHHHhh----hhhccccceee
Q psy2733         398 PVECAVCSELGVANVLLKPCNHAVACEECSSRMK----KCIMCKTFIEM  442 (644)
Q Consensus       398 ~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~~  442 (644)
                      ...|.||.+.. ......||||. .|..|.....    .||+||..+..
T Consensus        15 ~~~C~IC~~~~-~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A           15 PFRCFICRQAF-QNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGG   61 (81)
T ss_dssp             CSBCSSSCSBC-CSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred             CCCCcCCCchh-cCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccc
Confidence            35699999987 44445699998 5999997764    69999999863

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=95.92  E-value=0.0066  Score=46.67  Aligned_cols=46  Identities=28%  Similarity=0.630  Sum_probs=35.2

Q ss_pred             ccccccccccc--ceEEecCCCccccchhhHHHh----hhhhccccceeeeee
Q psy2733         399 VECAVCSELGV--ANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRVT  445 (644)
Q Consensus       399 ~~C~iC~d~~~--~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~~  445 (644)
                      ..|.||++...  ..+...||||. .|..|....    ..||+||..+....+
T Consensus        15 ~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           15 EKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             CSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            56999987531  34566699998 699999765    379999999877653

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.91  E-value=0.0035  Score=50.74  Aligned_cols=43  Identities=26%  Similarity=0.750  Sum_probs=33.2

Q ss_pred             cccccccccccc---eEEecCCCccccchhhHHHh-------hhhhccccceee
Q psy2733         399 VECAVCSELGVA---NVLLKPCNHAVACEECSSRM-------KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~---~v~~~PC~h~~~C~~C~~~~-------~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+....   .....||||. .|..|....       ..||.||..+..
T Consensus        16 ~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           16 LECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             CCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            569999987533   1455599997 699999776       479999998754

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=95.86  E-value=0.0022  Score=50.86  Aligned_cols=45  Identities=27%  Similarity=0.592  Sum_probs=34.3

Q ss_pred             ccccccccccc-ceEEecC--CCccccchhhHHHhh-----hhhccccceeeee
Q psy2733         399 VECAVCSELGV-ANVLLKP--CNHAVACEECSSRMK-----KCIMCKTFIEMRV  444 (644)
Q Consensus       399 ~~C~iC~d~~~-~~v~~~P--C~h~~~C~~C~~~~~-----~Cp~Cr~~i~~~~  444 (644)
                      ..|.||++... ....+.|  |||. .|..|...++     .||.||+.+....
T Consensus        12 ~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A           12 VECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             CcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            45999999542 2234445  9998 6999998885     8999999998754

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.60  E-value=0.011  Score=46.02  Aligned_cols=49  Identities=27%  Similarity=0.441  Sum_probs=36.0

Q ss_pred             cccccccccccc--ceEEecCCCccccchhhHHHh----hhhhccccceeeeeecC
Q psy2733         398 PVECAVCSELGV--ANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRVTTD  447 (644)
Q Consensus       398 ~~~C~iC~d~~~--~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~~~~  447 (644)
                      ...|.||++...  ..+...||+|. .|..|....    ..||+||..+....+..
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   69 (74)
T 2ep4_A           15 HELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQLS   69 (74)
T ss_dssp             SCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred             CCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence            356999998632  23344499998 799999764    37999999997765543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=95.58  E-value=0.0059  Score=50.92  Aligned_cols=43  Identities=23%  Similarity=0.593  Sum_probs=34.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      ..|.||++....-+.+.||||. .|..|....     ..||.||..+..
T Consensus        23 ~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           23 FRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             TBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            3599999987455554799998 599999764     379999999853

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.44  E-value=0.0054  Score=49.13  Aligned_cols=42  Identities=31%  Similarity=0.706  Sum_probs=33.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHH----------hhhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSR----------MKKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~----------~~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.....+ ..||||. .|..|...          ...||.||..+..
T Consensus        20 ~~C~IC~~~~~~p~-~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           20 VTCPICLELLKEPV-SADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TSCTTTCSCCSSCE-ECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             CCCcCCChhhCcce-eCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            46999999863444 4599997 69999976          3479999998864

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=95.38  E-value=0.0077  Score=52.38  Aligned_cols=41  Identities=27%  Similarity=0.703  Sum_probs=32.6

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh-----hhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK-----KCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-----~Cp~Cr~~i~~  442 (644)
                      .|.||.+....- ...||||. .|..|.....     .||.||..+..
T Consensus        54 ~C~IC~~~~~~p-~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           54 QCICCQELVFRP-ITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             BCTTTSSBCSSE-EECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCcCChHHcCc-EEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            499999987444 44599998 6999997653     89999998865

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=95.37  E-value=0.0087  Score=49.72  Aligned_cols=42  Identities=21%  Similarity=0.631  Sum_probs=33.3

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh----hhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK----KCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~~  442 (644)
                      .|.||.+.....+...||||. .|..|.....    .||.||..+..
T Consensus        24 ~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           24 RCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            599999987444445599998 5999997753    79999998864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=95.34  E-value=0.005  Score=47.55  Aligned_cols=43  Identities=23%  Similarity=0.635  Sum_probs=32.9

Q ss_pred             cccccccccccce------EEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         399 VECAVCSELGVAN------VLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~------v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      ..|.||++.....      +...||||. .|..|..+.    ..||.||..+..
T Consensus        11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A           11 VSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             CBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence            4699999864222      256699997 699999765    389999998864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.34  E-value=0.0095  Score=46.99  Aligned_cols=46  Identities=28%  Similarity=0.577  Sum_probs=34.5

Q ss_pred             cccccccccccc--ceEEecCCCccccchhhHHHh----hhhhccccceeeee
Q psy2733         398 PVECAVCSELGV--ANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRV  444 (644)
Q Consensus       398 ~~~C~iC~d~~~--~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~  444 (644)
                      ...|.||++...  ..+...||+|. .|..|..+.    ..||+||..+....
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           15 GLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             SCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred             CCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence            357999987532  33455599997 799999765    37999999987643

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.31  E-value=0.0049  Score=46.99  Aligned_cols=43  Identities=26%  Similarity=0.601  Sum_probs=33.2

Q ss_pred             ccccccccccccceEEecCCCccccchhhHHHhh-----hhhccccceee
Q psy2733         398 PVECAVCSELGVANVLLKPCNHAVACEECSSRMK-----KCIMCKTFIEM  442 (644)
Q Consensus       398 ~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-----~Cp~Cr~~i~~  442 (644)
                      ...|.||.+.....+. .||||. .|..|.....     .||.||+.+..
T Consensus        15 ~~~C~IC~~~~~~p~~-~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           15 KYKCEKCHLVLCSPKQ-TECGHR-FCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CEECTTTCCEESSCCC-CSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CCCCCCCChHhcCeeE-CCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            3569999987633333 599998 6999998653     79999998754

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.28  E-value=0.011  Score=47.02  Aligned_cols=45  Identities=18%  Similarity=0.527  Sum_probs=33.4

Q ss_pred             hhcCcccccccCC--cCeEEe-cC-----cccchhhhhcC------CCCccccccccce
Q psy2733         476 EEMNTCTICMERC--RNTIFL-CG-----HGTCDVCAKTL------KFCHMCRKLIEQR  520 (644)
Q Consensus       476 ~~~~~C~iC~~~~--~~~~~~-Cg-----H~~C~~C~~~~------~~Cp~Cr~~i~~~  520 (644)
                      .++..|.||++..  .+.+.+ |+     |.+...|..+.      ..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            3446899999754  234556 96     99999999842      4899999988643

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=95.27  E-value=0.0087  Score=50.63  Aligned_cols=44  Identities=23%  Similarity=0.632  Sum_probs=35.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----hhhhccccceeee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMR  443 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~  443 (644)
                      ..|.||.+....-+...||||. .|..|....    ..||.||..+...
T Consensus        16 ~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           16 LMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             TBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCcccccc
Confidence            3599999987455555599997 599999776    4799999988753

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.22  E-value=0.0049  Score=49.42  Aligned_cols=42  Identities=29%  Similarity=0.695  Sum_probs=33.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----------hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----------KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----------~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.. ......||||. .|..|....          ..||.||..+..
T Consensus        20 ~~C~IC~~~~-~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           20 VTCPICLELL-TQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCTTTCSCC-SSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCccc-CCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            5699999986 33344599997 699999763          379999999875

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=95.19  E-value=0.0085  Score=44.95  Aligned_cols=42  Identities=7%  Similarity=-0.039  Sum_probs=36.9

Q ss_pred             CcccccccCCcCeEEe--cCcccchhhhhcC----CCCccccccccce
Q psy2733         479 NTCTICMERCRNTIFL--CGHGTCDVCAKTL----KFCHMCRKLIEQR  520 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~--CgH~~C~~C~~~~----~~Cp~Cr~~i~~~  520 (644)
                      ..|+||++...+.|..  |||.++..|++..    ..||+++.+++..
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            5799999999999987  9999999999853    4799999998754

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=95.18  E-value=0.0081  Score=49.11  Aligned_cols=43  Identities=23%  Similarity=0.518  Sum_probs=32.4

Q ss_pred             ccccccccccc--ceEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         399 VECAVCSELGV--ANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~--~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      ..|.||++...  ..+...||+|. .|..|....    ..||+||..+..
T Consensus        41 ~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           41 MCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence            46999997631  22555699996 799999774    379999988754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.12  E-value=0.0086  Score=46.91  Aligned_cols=43  Identities=23%  Similarity=0.489  Sum_probs=32.6

Q ss_pred             ccccccccccc--ceEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         399 VECAVCSELGV--ANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~--~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      ..|.||++...  ..+...||+|. .|..|....    ..||+||+.+..
T Consensus        24 ~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           24 TLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             CEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            56999997532  33456699998 799999765    379999988753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=95.08  E-value=0.0053  Score=46.28  Aligned_cols=43  Identities=23%  Similarity=0.611  Sum_probs=32.6

Q ss_pred             cccccccccccc------eEEecCCCccccchhhHHHhh----hhhccccceee
Q psy2733         399 VECAVCSELGVA------NVLLKPCNHAVACEECSSRMK----KCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~------~v~~~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~~  442 (644)
                      ..|.||.+....      .+...||||. .|.+|..+..    .||.||+.+..
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            4 VSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCc
Confidence            359999986422      2355599999 6999997653    79999998864

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=95.07  E-value=0.0082  Score=43.74  Aligned_cols=41  Identities=32%  Similarity=0.675  Sum_probs=30.7

Q ss_pred             cccccccccccc--eEEecC-CCccccchhhHHHh----hhhhccccce
Q psy2733         399 VECAVCSELGVA--NVLLKP-CNHAVACEECSSRM----KKCIMCKTFI  440 (644)
Q Consensus       399 ~~C~iC~d~~~~--~v~~~P-C~h~~~C~~C~~~~----~~Cp~Cr~~i  440 (644)
                      .+|.||++....  .+...| |||. .|..|..+.    ..||.||+.+
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~   53 (55)
T 1iym_A            6 VECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEe
Confidence            469999986422  244456 9997 699999764    4899999876

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=95.00  E-value=0.013  Score=53.77  Aligned_cols=43  Identities=21%  Similarity=0.590  Sum_probs=34.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhh-----hhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMK-----KCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-----~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.....+...||||. .|..|.....     .||.||..+..
T Consensus        55 ~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           55 LMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            3699999987555555699997 6999997752     59999999853

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=94.98  E-value=0.0038  Score=49.45  Aligned_cols=42  Identities=29%  Similarity=0.670  Sum_probs=32.7

Q ss_pred             cccccccccccceEEecCCCccccchhhHHH-----------hhhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSR-----------MKKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~-----------~~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.... ....||||. .|..|...           ...||.||..+..
T Consensus        13 ~~C~IC~~~~~~-p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           13 VTCPICLELLTE-PLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CEETTTTEECSS-CCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             CCCcCCCcccCC-eeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            469999997633 334599997 69999974           3479999998864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=94.78  E-value=0.015  Score=52.44  Aligned_cols=42  Identities=29%  Similarity=0.661  Sum_probs=33.3

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh-----hhhccccceeee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK-----KCIMCKTFIEMR  443 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-----~Cp~Cr~~i~~~  443 (644)
                      .|.||.+....-+ ..||||. .|..|.....     .||.||..+...
T Consensus        80 ~C~IC~~~~~~pv-~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           80 MCVCCQELVYQPV-TTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             BCTTTSSBCSSEE-ECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             EeecCChhhcCCE-EcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            5999999874444 4599997 6999997763     699999998654

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.69  E-value=0.011  Score=50.28  Aligned_cols=41  Identities=32%  Similarity=0.749  Sum_probs=32.0

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh-------hhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK-------KCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-------~Cp~Cr~~i~~  442 (644)
                      .|.||.+.. ......||||. .|..|.....       .||.||..+..
T Consensus        23 ~C~IC~~~~-~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           23 ECPICLELI-KEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             SCSSSCCCC-SSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCcccChhh-cCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            599999976 33344599997 5999997753       69999998764

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.66  E-value=0.0035  Score=46.15  Aligned_cols=41  Identities=24%  Similarity=0.628  Sum_probs=31.9

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh-hhhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-KKCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-~~Cp~Cr~~i~~  442 (644)
                      .|.||.+.. ......||||. .|..|.... ..||.||+.+..
T Consensus         8 ~C~IC~~~~-~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            8 RCQQCQAEA-KCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             SCSSSCSSC-BCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CceEeCCcc-CCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence            599999876 44455699997 699998654 489999988753

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=94.63  E-value=0.018  Score=44.92  Aligned_cols=40  Identities=25%  Similarity=0.717  Sum_probs=31.3

Q ss_pred             cccccccccccceEEecC-CCccccchhhHHHhh------hhhccccce
Q psy2733         399 VECAVCSELGVANVLLKP-CNHAVACEECSSRMK------KCIMCKTFI  440 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~P-C~h~~~C~~C~~~~~------~Cp~Cr~~i  440 (644)
                      ..|.||.+....-+. .| |||. .|..|.....      .||.||+.+
T Consensus        16 ~~C~IC~~~~~~p~~-~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~   62 (74)
T 2yur_A           16 LLCLICKDIMTDAVV-IPCCGNS-YCDECIRTALLESDEHTCPTCHQND   62 (74)
T ss_dssp             GSCSSSCCCCTTCEE-CSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred             CCCcCCChHHhCCeE-cCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcC
Confidence            569999998744444 58 9997 6999997652      699999864

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=94.42  E-value=0.016  Score=47.37  Aligned_cols=40  Identities=25%  Similarity=0.739  Sum_probs=31.4

Q ss_pred             cccccccccccceEEecC-CCccccchhhHHHh------hhhhccccce
Q psy2733         399 VECAVCSELGVANVLLKP-CNHAVACEECSSRM------KKCIMCKTFI  440 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~P-C~h~~~C~~C~~~~------~~Cp~Cr~~i  440 (644)
                      ..|.||.+....-+ ..| |||. .|..|....      ..||.||..+
T Consensus        14 ~~C~IC~~~~~~p~-~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           14 LLCLICKDIMTDAV-VIPCCGNS-YCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             TEETTTTEECSSCE-ECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CCCCCCChhhcCce-ECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            45999999864444 448 9998 699999765      2799999876

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=94.30  E-value=0.016  Score=47.25  Aligned_cols=46  Identities=24%  Similarity=0.430  Sum_probs=35.6

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceeeeeec
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEMRVTT  446 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~~~~~  446 (644)
                      .|..|.-...-...+.||.| +.|.+|....     +.||.|+.+|.+.-+.
T Consensus         3 fC~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~   53 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQC   53 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred             ecCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence            36777665545677889999 6899999664     4799999999886653

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=93.99  E-value=0.027  Score=48.00  Aligned_cols=44  Identities=30%  Similarity=0.491  Sum_probs=33.2

Q ss_pred             cccccccccccc-----------------eEEecCCCccccchhhHHHhh---------hhhccccceeee
Q psy2733         399 VECAVCSELGVA-----------------NVLLKPCNHAVACEECSSRMK---------KCIMCKTFIEMR  443 (644)
Q Consensus       399 ~~C~iC~d~~~~-----------------~v~~~PC~h~~~C~~C~~~~~---------~Cp~Cr~~i~~~  443 (644)
                      ..|.||++....                 .+...||+|. .|..|.....         .||+||..+..+
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            469999986311                 3346699997 6999997643         799999988765

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=93.84  E-value=0.014  Score=49.87  Aligned_cols=42  Identities=33%  Similarity=0.828  Sum_probs=33.2

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+....-+.+ ||||. .|..|....     ..||.||..+..
T Consensus        16 ~~C~iC~~~~~~p~~~-~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           16 CQCGICMEILVEPVTL-PCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HBCTTTCSBCSSCEEC-TTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCccCCcccCceeEc-CCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            4599999987444444 99998 699999654     389999999875

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=93.80  E-value=0.016  Score=49.82  Aligned_cols=41  Identities=29%  Similarity=0.614  Sum_probs=32.3

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh--hhhhcccccee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM--KKCIMCKTFIE  441 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~--~~Cp~Cr~~i~  441 (644)
                      .|.||.+....-+...||||. .|..|....  ..||.||..+.
T Consensus        24 ~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~   66 (117)
T 1jm7_B           24 RCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW   66 (117)
T ss_dssp             SCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred             CCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence            499999987343444499998 599999877  47999999874

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=93.56  E-value=0.036  Score=43.55  Aligned_cols=42  Identities=14%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+....-+. .||||. .|..|....     ..||.||..+..
T Consensus         9 ~~C~IC~~~~~~Pv~-~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            9 FRCPISLELMKDPVI-VSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSCTTTSCCCSSEEE-ETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCCCCccccccCCEE-cCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            459999997634444 499998 699999764     369999998854

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=93.48  E-value=0.039  Score=47.34  Aligned_cols=42  Identities=26%  Similarity=0.589  Sum_probs=33.0

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+....-+. .||||. .|..|....     ..||.||..+..
T Consensus        19 ~~C~IC~~~~~~p~~-~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           19 YECPICLMALREAVQ-TPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             GBCTTTCSBCSSEEE-CTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCcCChhhcCeEE-CCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            469999998744444 599998 699999664     289999988854

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.34  E-value=0.042  Score=41.15  Aligned_cols=36  Identities=31%  Similarity=0.862  Sum_probs=28.2

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhh-------hhhcc
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMK-------KCIMC  436 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-------~Cp~C  436 (644)
                      ..|.||.+.....+.. ||||. .|..|..+..       .||+|
T Consensus        21 ~~C~IC~~~~~~p~~~-~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           21 VICPICLDILQKPVTI-DCGHN-FCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CBCTTTCSBCSSCEEC-TTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CCCCcCCchhCCeEEe-CCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence            5699999987444444 99999 6999997753       58887

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.22  E-value=0.028  Score=41.19  Aligned_cols=36  Identities=31%  Similarity=0.802  Sum_probs=27.9

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-------hhhhcc
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-------KKCIMC  436 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-------~~Cp~C  436 (644)
                      ..|.||.+.. ......||||. .|..|....       ..||+|
T Consensus        16 ~~C~IC~~~~-~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           16 ASCSVCLEYL-KEPVIIECGHN-FCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CBCSSSCCBC-SSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred             CCCccCCccc-CccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence            5699999986 33344599998 699999876       368877

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=92.55  E-value=0.067  Score=45.64  Aligned_cols=42  Identities=24%  Similarity=0.558  Sum_probs=32.8

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.....+. .||||. .|..|....     ..||.||..+..
T Consensus        24 ~~C~IC~~~~~~p~~-~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           24 ISCQICEHILADPVE-TSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             TBCTTTCSBCSSEEE-CTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCcHhcCcEE-cCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            359999998744444 599998 599999664     379999998864

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=91.98  E-value=0.047  Score=48.52  Aligned_cols=40  Identities=20%  Similarity=0.517  Sum_probs=32.3

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccce
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFI  440 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i  440 (644)
                      ..|.||.+....-+. .||||. .|..|....     ..||.||..+
T Consensus        32 ~~C~IC~~~~~~pv~-~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           32 YLCSACRNVLRRPFQ-AQCGHR-YCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GBCTTTCSBCSSEEE-CTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCCCCCChhhcCcEE-CCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence            469999998644444 599998 699999886     3799999976

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.22  E-value=0.13  Score=39.94  Aligned_cols=43  Identities=21%  Similarity=0.396  Sum_probs=33.2

Q ss_pred             CcccccccCCcCeE-Ee-cCcccchhhhhc----C--CCCccccccccceE
Q psy2733         479 NTCTICMERCRNTI-FL-CGHGTCDVCAKT----L--KFCHMCRKLIEQRI  521 (644)
Q Consensus       479 ~~C~iC~~~~~~~~-~~-CgH~~C~~C~~~----~--~~Cp~Cr~~i~~~~  521 (644)
                      ..|.||++....-. .. |+|.+=..|+.+    .  ..||+||.+....+
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~   66 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI   66 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence            56999999887544 33 999999999872    2  68999998876543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.93  E-value=0.21  Score=39.56  Aligned_cols=31  Identities=26%  Similarity=0.558  Sum_probs=23.5

Q ss_pred             EEecCCCccccchhhHHHh----hhhhccccceeee
Q psy2733         412 VLLKPCNHAVACEECSSRM----KKCIMCKTFIEMR  443 (644)
Q Consensus       412 v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~  443 (644)
                      +..-+|+|. .+..|..+-    ..||+||+.+...
T Consensus        43 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           43 VVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             EEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             EEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcchh
Confidence            344369998 699999764    4799999987643

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=89.87  E-value=0.066  Score=53.96  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=32.6

Q ss_pred             hcCcccccccCCcC------eEE--e-cCcccchhhhhc----C-----------CCCccccccccceE
Q psy2733         477 EMNTCTICMERCRN------TIF--L-CGHGTCDVCAKT----L-----------KFCHMCRKLIEQRI  521 (644)
Q Consensus       477 ~~~~C~iC~~~~~~------~~~--~-CgH~~C~~C~~~----~-----------~~Cp~Cr~~i~~~~  521 (644)
                      ....|.||++...+      .+.  . |||.|-..|...    .           ..||+||.+|+...
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf  375 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF  375 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence            44689999976554      222  3 999999999752    1           36999999998543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=89.45  E-value=0.18  Score=46.10  Aligned_cols=42  Identities=26%  Similarity=0.589  Sum_probs=33.3

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+....-+. .||||. .|..|....     ..||.||..+..
T Consensus        19 ~~C~IC~~~~~~pv~-~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           19 YECPICLMALREAVQ-TPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GBCTTTCSBCSSEEE-CTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCChhhcCcEE-CCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence            469999998744444 599998 599999775     289999988765

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=87.60  E-value=0.33  Score=38.78  Aligned_cols=42  Identities=7%  Similarity=-0.014  Sum_probs=32.7

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhh----hhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMK----KCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.. ..-+..||||. .|..|.....    .||+|+..+..
T Consensus        15 ~~CpI~~~~m-~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           15 FRDPLMDTLM-TDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TBCTTTCSBC-SSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             eECcccCchh-cCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            3599999987 44455599997 7999987653    79999987754

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=87.16  E-value=0.3  Score=40.41  Aligned_cols=42  Identities=7%  Similarity=-0.051  Sum_probs=32.8

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhh----hhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMK----KCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~----~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.. ..-+..||||. .|..|.....    .||+|+.++..
T Consensus        30 ~~CpI~~~~m-~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           30 FRDPLMDTLM-TDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             TBCTTTCSBC-SSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             hCCcCccCcc-cCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence            3599999987 44455599998 7999997763    79999988753

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=86.47  E-value=0.38  Score=39.62  Aligned_cols=42  Identities=12%  Similarity=0.065  Sum_probs=32.5

Q ss_pred             cccccccccccceEEecCCC-ccccchhhHHHhh----hhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCN-HAVACEECSSRMK----KCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~-h~~~C~~C~~~~~----~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.. ..-+..||| |. .|..|.....    .||+|+..+..
T Consensus        23 ~~CpI~~~~m-~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           23 FLDPIMSTLM-CDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TBCTTTCSBC-SSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cCCcCccccc-cCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            3599999987 444556999 75 6999997763    79999988753

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=86.34  E-value=0.3  Score=39.77  Aligned_cols=40  Identities=18%  Similarity=0.413  Sum_probs=29.2

Q ss_pred             cccccccccccc--eEEecCCCccccchhhHHHh------------hhhhc--cccc
Q psy2733         399 VECAVCSELGVA--NVLLKPCNHAVACEECSSRM------------KKCIM--CKTF  439 (644)
Q Consensus       399 ~~C~iC~d~~~~--~v~~~PC~h~~~C~~C~~~~------------~~Cp~--Cr~~  439 (644)
                      ..|.||++....  .+.+.||||. .|.+|....            .+||.  |+..
T Consensus         6 ~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            6 SGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             cCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            359999986322  3344589998 699998553            26999  9977

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=84.77  E-value=0.39  Score=35.56  Aligned_cols=43  Identities=30%  Similarity=0.652  Sum_probs=30.2

Q ss_pred             hhcCcccccccCCcCeEEe-cC--c---ccchhhhhc------CCCCcccccccc
Q psy2733         476 EEMNTCTICMERCRNTIFL-CG--H---GTCDVCAKT------LKFCHMCRKLIE  518 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~-Cg--H---~~C~~C~~~------~~~Cp~Cr~~i~  518 (644)
                      +++..|.||++...+..+. |.  |   .+=..|..+      -..||+|+.+..
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4456899999876554445 65  4   457778773      358999998865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=84.69  E-value=0.43  Score=47.22  Aligned_cols=42  Identities=7%  Similarity=-0.067  Sum_probs=32.2

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHhh-----hhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRMK-----KCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-----~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.. ..-+..||||. .|..|.....     .||+|+.++..
T Consensus       209 ~~c~i~~~~~-~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          209 LCGKISFELM-REPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             TBCTTTCSBC-SSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cCCcCcCCHh-cCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            3599999987 44455699997 6999987642     39999988853

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=84.04  E-value=0.58  Score=39.11  Aligned_cols=28  Identities=32%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             EEecCCCccccchhhHHHh----hhhhccccce
Q psy2733         412 VLLKPCNHAVACEECSSRM----KKCIMCKTFI  440 (644)
Q Consensus       412 v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i  440 (644)
                      +...||+|. .+..|...-    ..||+||+..
T Consensus        68 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           68 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             EEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             EeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence            455699998 699999773    3799999984

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=82.46  E-value=0.53  Score=36.25  Aligned_cols=28  Identities=43%  Similarity=0.903  Sum_probs=25.4

Q ss_pred             cCcccccccCCcCeEEe-c----Ccccchhhhh
Q psy2733         478 MNTCTICMERCRNTIFL-C----GHGTCDVCAK  505 (644)
Q Consensus       478 ~~~C~iC~~~~~~~~~~-C----gH~~C~~C~~  505 (644)
                      ...|.+|.++..+..|. |    +|.||..|.+
T Consensus        15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr   47 (93)
T 2cs3_A           15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR   47 (93)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred             eeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence            35799999999999999 9    5799999988

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=80.61  E-value=0.69  Score=41.33  Aligned_cols=57  Identities=23%  Similarity=0.481  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHhhhhhh------------hcCcccccccC-----CcCeEEe-cCcccchhhhhc-----CCCCcccccc
Q psy2733         460 SKIERVNYLESKISEIE------------EMNTCTICMER-----CRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKL  516 (644)
Q Consensus       460 ~~~~~~~~l~~~~~~~~------------~~~~C~iC~~~-----~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~  516 (644)
                      ...+.+.+|.++++++.            .+..|.+|...     ....+.. |.|.+|..|...     ...|-+|+..
T Consensus        38 ~EeeRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~  117 (153)
T 2zet_C           38 REEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA  117 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence            33466666766655541            45899999886     3455666 999999999953     3468888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	644
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-29
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-04
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	0.002
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-29
 Identities = 57/278 (20%), Positives = 100/278 (35%), Gaps = 6/278 (2%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDD-AGDTALHYAAFGNKPDAIQINSHVSGANR 60
            LL        V+ +  LL  GA V + ++  G T LH A   ++ D +++         
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
            RK                +   L   +         +      +       +    L K
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 121 QDF---VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNIL 177
           +     +  +   +         T + DA  KG  E+  +LL     ++   ++ G N L
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 178 NYAVLRGNMKVTEKIL-ALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
            +A+L  +    E I   L  + A V  +   G TPL +A    H+ +V+ L+E+  + I
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDI 273
           N  D   +T L+ AV      +   L  R  + D  D+
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 6e-12
 Identities = 45/266 (16%), Positives = 85/266 (31%), Gaps = 75/266 (28%)

Query: 125 LLRNGCNVNIQDN-NQDTPMHDAVAKGFEEIQLLLLSHPEVN------------------ 165
           LL  G NVN Q+     TP+H+AV    E+I  LLL H                      
Sbjct: 24  LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83

Query: 166 --------------LYLENSKGFNILNYAVLRGNMKVTEKILALNRNL--------ATVP 203
                         +   +  GF     A + G +K  + +     N+            
Sbjct: 84  SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM----AAVGQGQTSVIN 259
               G T L  A    H+E++++L+++   ++NA D   R  L+    ++      ++ +
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 260 YLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILL 319
            L+     ++++   G   L                                + E   L 
Sbjct: 204 LLLDHGADVNVRGERGKTPLIL------------------------------AVEKKHLG 233

Query: 320 AVFLFLVKHGAPLSLENNNRQKPLDL 345
            V   L +    ++  +++ +  L L
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK-KRTPLMAAVGQGQTSVINYLM 262
           +    L  A  N+ +++V+ L+E    N+N  + +   TPL  AV   +  ++  L+
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 1   KTLLHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           KT L +   +  +  +  LL +    +   D  G TAL  A         ++
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-23
 Identities = 62/279 (22%), Positives = 103/279 (36%), Gaps = 18/279 (6%)

Query: 4   LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRK 63
           LH+ A  G V    +LL R A        G T LH A   N  D +++     G +    
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSP 194

Query: 64  HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP---SAECSGILIK 120
                         +   +   +VE    +L              TP   +A+     + 
Sbjct: 195 AWNGYTP-------LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 247

Query: 121 QDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYA 180
              +      N N+ + +  TP+H    +G   +  +L+ H  V +      G+  L+ A
Sbjct: 248 ALLL--SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVA 304

Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
              GN+K+ +    L        KT  G++PLH A    H +IV LL++    + N +  
Sbjct: 305 SHYGNIKLVK--FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSS 361

Query: 241 KKRTPLMAAVGQGQTSVINYL-MLRDVALDIQDIDGNGL 278
              TPL  A   G  SV + L ++ D    +   D + +
Sbjct: 362 DGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM 400

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 3e-23
 Identities = 67/375 (17%), Positives = 125/375 (33%), Gaps = 38/375 (10%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI----NSHVSG 57
           T LH+ ++ G +  +  LL RGA     +   +T LH AA     +  +      + V+ 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 58  ANRSRK----HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAE 113
             +  +       +  H  +    ++  +N                   + + +     +
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 114 CSGILIKQDF------------------VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQ 155
            +                          +LL    + N    N  TP+H AV     +I 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 156 LLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVA 215
            LLL     + +     G+  L+ A  +  ++V   +  L    +   ++  G TPLH+A
Sbjct: 182 KLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSL--LQYGGSANAESVQGVTPLHLA 238

Query: 216 CFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
               H E+V  L+   + N N  +    TPL     +G   V + L+   V +D     G
Sbjct: 239 AQEGHAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 297

Query: 276 NGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGP-----SNEHGILLAVFLFLVKHGA 330
              LH      N        +    +  +      P        H     +   L+K+GA
Sbjct: 298 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH---TDIVTLLLKNGA 354

Query: 331 PLSLENNNRQKPLDL 345
             +  +++   PL +
Sbjct: 355 SPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-07
 Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 28/203 (13%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
           T LHI A Q  VE    LL  G         G T LH AA     + + +          
Sbjct: 200 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 259

Query: 62  RK-------HIYKERHRTVTTE---KVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPS 111
                    H+  +       +   K     +       TP+        +         
Sbjct: 260 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 319

Query: 112 AECSGILIKQDF----------------VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQ 155
                   K  +                +LL+NG + N   ++  TP+  A   G+  + 
Sbjct: 320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT 379

Query: 156 --LLLLSHPEVNLYLENSKGFNI 176
             L +++     + + +    + 
Sbjct: 380 DVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 6e-06
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
            + LH  A QG  + + +LL  GA        G T L  A          +   V+  + 
Sbjct: 331 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT--DE 388

Query: 61  SRKHIYKERHRTVTTEKVQ 79
           +   +  ++HR    E V 
Sbjct: 389 TSFVLVSDKHRMSFPETVD 407

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 1e-18
 Identities = 56/261 (21%), Positives = 100/261 (38%), Gaps = 46/261 (17%)

Query: 2   TLLHILAYQGCVEEL-NILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
            ++  LAY G +EEL   +LA  +     D    TALH+A      + ++    +     
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 61  SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
            +                               L++      +E +              
Sbjct: 65  DKDDAGW------------------------SPLHIAASAGRDEIV-------------- 86

Query: 121 QDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYA 180
               LL  G  VN  + N  TP+H A +K   EI ++LL     N   ++      ++ A
Sbjct: 87  --KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRA 143

Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
             +GN+K+   +L    +     + ++G TPLH+AC  + +E  +LLV     +I   + 
Sbjct: 144 AAKGNLKMIHILLYYKASTNI--QDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENK 200

Query: 241 KKRTPLMAAVGQGQTSVINYL 261
           +++TPL  A G G   ++  +
Sbjct: 201 EEKTPLQVAKG-GLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 7/209 (3%)

Query: 140 DTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRN 198
           +  + +    G  EE++  +L+         +      L++A   G+ ++ E +L L   
Sbjct: 4   NLMVCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 62

Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVI 258
                K   G++PLH+A      EIV+ L+      +NA++    TPL  A  + +  + 
Sbjct: 63  --VNDKDDAGWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIA 119

Query: 259 NYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTP--ITREKSVPIYEEYLSVGGPSNEHG 316
             L+      D +D      +H    K N       +  + S  I +   +         
Sbjct: 120 VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 179

Query: 317 ILLAVFLFLVKHGAPLSLENNNRQKPLDL 345
             +     LV  GA + +EN   + PL +
Sbjct: 180 ERVEEAKLLVSQGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 8e-07
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 9/156 (5%)

Query: 4   LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ-INSHVSGANRSR 62
           LHI A  G  E +  LL +GA V   +  G T LHYAA  N+ +    +    +  +   
Sbjct: 74  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 133

Query: 63  KHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQD 122
            +     HR      ++    L   +  T + +           L     E      K  
Sbjct: 134 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQD-----TEGNTPLHLACDEERVEEAK-- 186

Query: 123 FVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL 158
            +L+  G ++ I++  + TP+  A       ++ ++
Sbjct: 187 -LLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 221

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 1e-16
 Identities = 43/240 (17%), Positives = 70/240 (29%), Gaps = 12/240 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGA---CVYYPDDAGDTALHYAAFGNKPDAIQINSHVSG 57
            T LH+         L+ LL   A    +   +D G TALH AA   +   ++       
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 58  ANRSRKHIYKERHRTVTTEKVQRP-----SNLPKVEPETPMLNMKFIPRMNEDMLDTPSA 112
                +             +            P    +     +        D    P+A
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 113 ECSGILIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN 170
             S    + +           +  ++ +  TP+H AV     E+  LL          E 
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
           + G   L+ AV      V E +L    +     +   G TPL  A    +  +  LL   
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTA--RMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEK--YKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
            T DG T LH+A  + H   ++ L+        ++  +   +T L  A   G+ S +  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 262 M 262
            
Sbjct: 65  Y 65

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 40/228 (17%), Positives = 66/228 (28%), Gaps = 20/228 (8%)

Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSH--PEVNLYLENSKGFNILNYAVLRGNMKVTEKIL 193
             + DT +H AV    E     LL        L L+N  G   L+ A + G     EK+ 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 194 ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN---------ALDLKKRT 244
           A       +     G T LH+AC         +L++    +           + D    T
Sbjct: 66  AAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 245 PLMAAVGQGQTSVIN--YLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIY 302
               A    Q +  N       D  L ++  + +G         +     +   +     
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 303 EEYLSVGGPSNEHGIL-----LAVFLFLVKHGAPLSLENNNRQKPLDL 345
                         +       +V   L+K GA  +      + PL  
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 43/255 (16%), Positives = 67/255 (26%), Gaps = 28/255 (10%)

Query: 28  YPDDAGDTALHYAAFGNKPDAIQ-INSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPK 86
           Y  + GDTALH A        +  +      A      +  +  +T              
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 87  VEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDA 146
            +       +    R     L       +        VLL+   +     ++        
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC---VLLQPRPSHPRDASDTYLTQSQD 118

Query: 147 VAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTS 206
                      + S P                      N +  E+    +  L    +  
Sbjct: 119 CTPDTSHAPAAVDSQP----------------------NPENEEEPRDEDWRLQLEAENY 156

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
           DG TPLHVA  +   E+V LL +             RTPL  AV     SV+  L+    
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

Query: 267 ALDIQDIDGNGLLHF 281
               +   G   L  
Sbjct: 217 DPTARMYGGRTPLGS 231

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 76.3 bits (186), Expect = 7e-16
 Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 17/248 (6%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
            +       G  EE+  LL RGA + Y +  G TALH A   +         +V      
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD---------NVDMVKFL 92

Query: 62  RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
            ++                 +           L  +       +       +      ++
Sbjct: 93  VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI----AEE 148

Query: 122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
           + +       VN Q  + +    +       + +  L S    ++      G   L+ A 
Sbjct: 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV-RHAKSGGTALHVAA 207

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
            +G  +V + ++    ++       DG+TPLH A      E   +LVE    ++ A++  
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDY--DGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKV 264

Query: 242 KRTPLMAA 249
            +T    A
Sbjct: 265 GQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
           D       AC +   E V  L+E+   +IN  ++   T L  A       ++ +L+
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLV 93

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 35/240 (14%), Positives = 69/240 (28%), Gaps = 19/240 (7%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           LL  G ++N  + +  T +H A      ++   L+ +       +N     +        
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA---AS 115

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
              +      +++        S+G TPL +A      E+++  V +  V+I A       
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR----- 170

Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
                          +L    +        G   LH    K       +  +    +  +
Sbjct: 171 --KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228

Query: 305 YLSVGGP-----SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED-TSLLNEIME 358
                 P                  LV++   +   N   Q   D+  ED    L E+ +
Sbjct: 229 DYDGWTPLHAAAHWGK---EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
           T LH  A+ G  E   IL+     +   +  G TA   A 
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.3 bits (181), Expect = 3e-15
 Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 52/236 (22%)

Query: 30  DDAGDTALHYAAFGNKPDAIQI-NSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVE 88
           D+ G+T LH+       + ++    H S              + V +           + 
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL- 162

Query: 89  PETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVA 148
                                               L      + ++D+   T +H  + 
Sbjct: 163 ------------------------------------LDYLYPCLILEDSMNRTILHHIII 186

Query: 149 KG------------FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN 196
                          + +   ++      +    ++  +  N         + E +    
Sbjct: 187 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW 246

Query: 197 RNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG 251
                +  + S+G T L++A    +I IV+ L++ Y  +    +     P+    G
Sbjct: 247 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.2 bits (165), Expect = 4e-13
 Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 16/173 (9%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL---LSHPEVNLYLENSKGFNILNYAV 181
           L+++G N    DN  ++ +  AV              L +    L LE+S    IL++ +
Sbjct: 126 LVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII 185

Query: 182 LRGNMK-----------VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
           +   M            +    +   +N      T++  +  +         I+E L  K
Sbjct: 186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 245

Query: 231 YKV--NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
           + +   +NA D    T L  A   G  S+++ L+       I +  G   + F
Sbjct: 246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 298

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 9e-11
 Identities = 55/325 (16%), Positives = 105/325 (32%), Gaps = 59/325 (18%)

Query: 40  AAFGNKPDAIQ--INSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMK 97
           + F + P  I   + S V   N  +  +     R +  E  + P++L             
Sbjct: 12  SDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGS 71

Query: 98  FIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQ-DNNQDTPMHDAVAKGFEEIQL 156
              +      D+   E +               N+NI  D + +TP+H   +    E+  
Sbjct: 72  SNQQQQHVSFDSLLQEVNDAFPNTQL-------NLNIPVDEHGNTPLHWLTSIANLELVK 124

Query: 157 LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGF--TPLHV 214
            L+ H   N    ++ G + L  AV   N   +    AL   L       D    T LH 
Sbjct: 125 HLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH 183

Query: 215 ACFNDHIE------------IVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
                 +             ++  +V+K    I +   +K +      G+ + S++  L 
Sbjct: 184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 243

Query: 263 LRDVA---LDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILL 319
           L+ +    L+ QD +G+  L+      N                               +
Sbjct: 244 LKWIIANMLNAQDSNGDTCLNIAARLGN-------------------------------I 272

Query: 320 AVFLFLVKHGAPLSLENNNRQKPLD 344
           ++   L+ +GA   + N +  +P+D
Sbjct: 273 SIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
            T L+I A  G +  ++ LL  GA  +  + +G   + + A
Sbjct: 260 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 42/261 (16%), Positives = 76/261 (29%), Gaps = 43/261 (16%)

Query: 4   LHILAYQGCVEELNILL-ARGACVYYPDDAGDTALHYAA-FGNKPDAIQINSHVSGANRS 61
           LH    +    ++  LL ++ + +   D  G   LH++  F        + S +   N  
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 62  RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
                           V     +  +       ++  I       L     +      + 
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW---FEV 120

Query: 122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
              L+ NG +V I+D     P+H A + G  ++  LL    +  +               
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN-------------- 166

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
                                 +   G+TPL  A    H +   LLVEKY    + +D K
Sbjct: 167 ---------------------WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 205

Query: 242 KRTPLMAAVGQGQTSVINYLM 262
                  A+      V  + +
Sbjct: 206 GAKAEDVAL---NEQVKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 210 TPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
            PLH AC  +    V+ L+      +   D   R PL  +V      + ++L+
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL 54

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 140 DTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRN 198
           + P+H A  +  F ++Q LL S P   L  ++  G   L+++V     ++T  +L+   N
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLV--EKYKVNINALDLKKRTPLMAAVGQGQTS 256
           +       D          +     V   +     K ++N +  +  T L  AVG+    
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 257 VINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGG----PS 312
           V  +L+    ++ I+D      LH      +     +               G      +
Sbjct: 120 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 313 NEHGILLAVFLFLVKHGAPLSLENNNRQKPLDL 345
              G   A  L + K+GA   L +N   K  D+
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 18/247 (7%)

Query: 1   KTLLHILAYQGCVEELNILL--------ARGACVYYPDDAGDTALHYAAFGNKPDAIQIN 52
           +T+LH +A     E+   L+        A GA V   D   +T L  A    +   +   
Sbjct: 34  RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 93

Query: 53  SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSA 112
                         +         +            +      +        ++     
Sbjct: 94  MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 153

Query: 113 E-------CSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVN 165
           E          ++ K   V        + +     T +H A       I   L+     N
Sbjct: 154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 213

Query: 166 LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
              ++  G   +  A   G ++V   ++    ++      +   T   +A  N+H  IV+
Sbjct: 214 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA--VDATDHTARQLAQANNHHNIVD 271

Query: 226 LLVEKYK 232
           +  ++ +
Sbjct: 272 IF-DRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 35/275 (12%), Positives = 79/275 (28%), Gaps = 16/275 (5%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ-INSHVSGAN 59
           ++ + +         +   + R +          T LH+ A  +  +  + +  H +   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 60  RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
            +             T  +       +      M         N+          +    
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 120

Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHD----AVAKGFEEIQLLLL---------SHPEVNL 166
                +L +       +      M      A  +G +++    L                
Sbjct: 121 GMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 180

Query: 167 YLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVEL 226
             E  KG   L+YA    NM + + +    +      +  DG TP+ +A     IE+V  
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYL-VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 227 LVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
           L+++   ++ A+D    T    A      ++++  
Sbjct: 240 LIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 13/82 (15%)

Query: 210 TPLHVACF-NDHIEIVELLVEKYKVNINALDLK-KRTPLMAAVGQGQTSVINYLMLRDVA 267
           +P+ +         I E +  +   ++N +D +  RT L              L++ +  
Sbjct: 2   SPIKLHTEAAGSYAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 268 LDI--------QDIDGNGLLHF 281
             I         D D N  L  
Sbjct: 59  ECIAAGADVNAMDCDENTPLML 80

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.0 bits (167), Expect = 5e-14
 Identities = 41/215 (19%), Positives = 72/215 (33%), Gaps = 10/215 (4%)

Query: 14  EELNILLARGACV-YYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRT 72
           + ++ LLA+GA +    D  G+T+LH AA   + DA +          S+ +  +     
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 73  VTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNV 132
                      +      T +            +    + E           L+    ++
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEG------MVEDLITADADI 116

Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKI 192
           N  DN+  T +H A A       + +L     N   ++ K    L  A   G+ + ++ +
Sbjct: 117 NAADNSGKTALHWAAAVNNT-EAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 175

Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
           L    N            P  VA    H +IV LL
Sbjct: 176 LDNFANREI--TDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 41/222 (18%), Positives = 65/222 (29%), Gaps = 35/222 (15%)

Query: 125 LLRNGCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
           LL  G  +N   D   +T +H A      +    L                    +A + 
Sbjct: 8   LLAQGAELNATMDKTGETSLHLAARFARADAAKRL--LDAGADANSQDNTGRTPLHAAVA 65

Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
            +     +IL  NR      +  DG TPL +A       +VE L+     +INA D   +
Sbjct: 66  ADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD-ADINAADNSGK 124

Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYE 303
           T L  A     T  +N L++     D QD      L                        
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL---------------------- 162

Query: 304 EYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDL 345
                                L+ + A   + ++  + P D+
Sbjct: 163 ---------AAREGSYEASKALLDNFANREITDHMDRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 11/51 (21%), Positives = 18/51 (35%)

Query: 1   KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
           +T L + A +G  E    LL   A     D         A+     D +++
Sbjct: 157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRL 207

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 3e-13
 Identities = 37/228 (16%), Positives = 70/228 (30%), Gaps = 9/228 (3%)

Query: 1   KTLLHILAYQG---CVEEL-NILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVS 56
            T LHI   QG    V  L N+    G  +   ++   T LH A     P  +++     
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 57  GANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG 116
            +  +     +         +                L+++         L         
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC- 122

Query: 117 ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI 176
              +   +LL  G +++  D            +      + LL     N+  +   G + 
Sbjct: 123 --QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 180

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIV 224
           L+ A  RG + +   ++    + +   K     TPL VA     I+I+
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSL--KNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 5e-11
 Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 4/229 (1%)

Query: 31  DAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPE 90
           + GDT LH A       A+    ++         IY    +T     V            
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 91  TPMLNMKFIPRMNEDMLDTPSAECS-GILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAK 149
           T   +   + R  +          S   L            ++  ++ +  T +H AV  
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 150 GFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGF 209
             +E   LLL        ++   G + L +AV   ++ + + +L    N     +   G 
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN--VNAQMYSGS 178

Query: 210 TPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVI 258
           + LH A     + +V  LV     + +  +    TPLM A  +    ++
Sbjct: 179 SALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 46/223 (20%), Positives = 78/223 (34%), Gaps = 32/223 (14%)

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGF-EEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
           +  + G  ++I +N + TP+H AV       ++LL+ +         + +    L     
Sbjct: 25  LFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR 84

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
                      A    L    +  DG T LHVA   +  E V+LL+E+            
Sbjct: 85  SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSG 144

Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIY 302
           R+PL+ AV     S++  L+     ++ Q   G+  LH    +                 
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL--------------- 189

Query: 303 EEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDL 345
                           L +   LV+ GA  SL+N +   PL +
Sbjct: 190 ----------------LPLVRTLVRSGADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 4   LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ 50
           LH  + +G +  +  L+  GA     +   DT L  A      D ++
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 68.8 bits (167), Expect = 4e-13
 Identities = 28/281 (9%), Positives = 54/281 (19%), Gaps = 37/281 (13%)

Query: 1   KTLLHILAYQGCVEELNI---LLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVS 56
           + +  + A  GC   L+    LL     V         A   AA       +        
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 57  GANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG 116
               +           +  E           E                            
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 117 ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI 176
            +I     LL     +   + ++       V                      +      
Sbjct: 211 NVIN---FLLDCPVMLAYAEIHEFEYGEKYVNPF----------------IARHVNRLKE 251

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE----KYK 232
           ++ A    N      ++  +  L    +       L        ++ +  L+     K  
Sbjct: 252 MHDAFKLSNPDGVFDLVTKSECL----QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 307

Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDI 273
                +       L  A+  G       L      L I  +
Sbjct: 308 APTATIPGDANELLRLALRLGNQGACALL------LSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 62.6 bits (151), Expect = 4e-11
 Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 4/183 (2%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEI--QLLLLSHPEVNLYLENSKGFNILNYAVL 182
             +   + + +    +     A   G       L LL   +  + +  ++ +     A  
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK--YKVNINALDL 240
            G++ V  ++  L          ++ +    +A  N H+ ++  L E    +        
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

Query: 241 KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVP 300
                  AAVG+G  +VIN+L+   V L   +I                     +E    
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 255

Query: 301 IYE 303
              
Sbjct: 256 FKL 258

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 21/164 (12%), Positives = 44/164 (26%), Gaps = 19/164 (11%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
                   +G    +N LL     +         A  +     +       +      + 
Sbjct: 199 AFRWAAVGRGHHNVINFLLDCPVML-------AYAEIHEFEYGEKYVNPFIARHVNRLKE 251

Query: 62  RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
               +K  +     + V +   L        ++      R +E +LD         L+  
Sbjct: 252 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIR-----RNDEVLLDDIR-----FLLSI 301

Query: 122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVN 165
               ++          + +  +  A+  G +    LLLS P V 
Sbjct: 302 P--GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 343

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 32/243 (13%), Positives = 62/243 (25%), Gaps = 40/243 (16%)

Query: 1   KTLLHILAYQGCVEE----LNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVS 56
            + LH+             +  +    A + + ++   T LH A   N+P+  +      
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 57  GANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG 116
                R             +       +      TP L+                A   G
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 117 ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI 176
            L   + ++         +  N  T +H AV     ++         V+L L+     N 
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL---------VSLLLKCGADVNR 173

Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
           + Y                            G++P  +        I + L +    N+ 
Sbjct: 174 VTY---------------------------QGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 206

Query: 237 ALD 239
            L 
Sbjct: 207 MLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 207 DGFTPLHVACFNDHIEIVELLVEK---YKVNINALDLKKRTPLMAA 249
           DG + LH+A  ++   +   ++ +       +N  +  ++TPL  A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 7e-05
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 3/160 (1%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV--- 181
           +  +   +N Q+N Q TP+H AV     EI   LL         +      +        
Sbjct: 25  VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC 84

Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
           L     +T+     + +        +G T LH+A  + ++ IVELLV             
Sbjct: 85  LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 144

Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
            RT L  AV      +++ L+     ++     G      
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 184

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 1e-08
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 7/158 (4%)

Query: 4   LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRK 63
           L   A +G +E+L  LL     V   +  G TAL     GN   A ++    +  +   +
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDR 64

Query: 64  HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDF 123
             +   H       +     L + + +  + + +    ++            G L   +F
Sbjct: 65  TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA-------KEGHLRVVEF 117

Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
           ++     NV  +++  DT    A   G  E+  L+ ++
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEK 230
           +   G T   +A      E+V L+   
Sbjct: 129 RNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 9e-06
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 4   LHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSR 62
           L   A +G V+E+  LL R        +  G TAL    FG+   A+++    +  N   
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQD 65

Query: 63  KHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQD 122
                  H    T  +     L +   +  + +      ++                   
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL---------AVQEGHTAV 116

Query: 123 FVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
              L    +++ +D    TP+  A+ +G +++  +L  H
Sbjct: 117 VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 204 KTSDGFTPLHVACFNDHIEIVELLVE 229
           + + G TPL +A      ++V++L  
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 6/137 (4%)

Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
           L R   + +  +    T +   +               +                     
Sbjct: 22  LHRELVHPDALNRFGKTALQVMMFGSTAIAL----ELLKQGASPNVQDTSGTSPVHDAAR 77

Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
              +    + +            G  P+H+A    H  +V       + +++  D +  T
Sbjct: 78  TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--FLAAESDLHRRDARGLT 135

Query: 245 PLMAAVGQGQTSVINYL 261
           PL  A+ +G   +++ L
Sbjct: 136 PLELALQRGAQDLVDIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 6/121 (4%)

Query: 125 LLRNGCNVNIQ------DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
              +G ++  +          +T +H AV         ++    + +  L+   G     
Sbjct: 25  AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 84

Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
                         L L    +       G TPL +A    H    ELL +      N+ 
Sbjct: 85  LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 144

Query: 239 D 239
            
Sbjct: 145 V 145

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 21/172 (12%), Positives = 37/172 (21%), Gaps = 50/172 (29%)

Query: 1   KTLLHIL---AYQGCVEELNILLARGACVYYP------DDAGDTALHYAAFGNKPDAIQI 51
              LH L        +  L    A G  +          +  +TALH A       ++ I
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 52  NS--HVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDT 109
                 +  N  ++                              L               
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALH------------------YCCLTDNAECLKLLLR--- 102

Query: 110 PSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
                                ++ I + + +TP+  A     E  + LL   
Sbjct: 103 ------------------GKASIEIANESGETPLDIAKRLKHEHCEELLTQA 136

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 8/157 (5%)

Query: 2   TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
             L   A  G  +E+ IL+A GA        G + LH AA        ++          
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLR----AGV 58

Query: 62  RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
            +    +  RT                      ++     +    L   +      +++ 
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL 158
                + G +V+ Q     T    ++  G E++  +L
Sbjct: 119 LI---KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 9/67 (13%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH 220
               ++  ++      L++A    + +V E ++    ++ T  ++    T   ++  N +
Sbjct: 88  KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT--QSKFCKTAFDISIDNGN 145

Query: 221 IEIVELL 227
            ++ E+L
Sbjct: 146 EDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
             T LH A  ++H E+VEL + KY  +++      +T    ++  G   +   L
Sbjct: 100 KMTALHWATEHNHQEVVEL-LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 460 SKIERVNYLESKISEIEEMNT----CTICMERCRNTIFL-CGHGTCDVCAKTL-----KF 509
           +  + +   + +     EM +    C IC E  ++     CGH  C  C  +      + 
Sbjct: 1   TPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG 60

Query: 510 CHMCRKLIEQRINIS 524
           C  CR  I+    I 
Sbjct: 61  CPFCRCEIKGTEPIV 75

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)

Query: 474 EIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTLKF-CHMCRK 515
           E  +   C  C    +    L C H  C  C +     C +C+ 
Sbjct: 2   EEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQA 45

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 464 RVNYLESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC-------AKTLKFCHMCRK 515
           RV  +++ I+ ++++  C IC+E  +  +   C H  C  C        K    C +C+ 
Sbjct: 7   RVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66

Query: 516 LIEQR 520
            I +R
Sbjct: 67  DITKR 71

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 469 ESKISEIEEMNTCTICME--RCRNTIFLCGHGTCDVCAKTL--KFCHMCRKLIEQR 520
            + +  +E++  C+ C    R    +  C H  C  C        C +C      +
Sbjct: 13  RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQ 68

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 481 CTICMERCRNTIFL--CGHGTCDVC----AKTLKFCHMCRKLIEQRINISRA 526
           C IC+E   N      C H  C VC     +    C +C+  +E  ++   +
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIES 59

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 203 PKTSDGFTPLHVACFNDHIEIVELL 227
            + + G  P+ +A    H ++   L
Sbjct: 97  VRDAWGRLPVDLAEELGHRDVARYL 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	644
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.98
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.59
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.5
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.48
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.38
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.35
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.28
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.22
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.1
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.02
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.0
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	97.92
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.91
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.2
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.14
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	97.08
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.01
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	96.82
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	96.73
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	95.96
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	95.91
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	95.85
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	95.78
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	95.16
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	94.73
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	93.42
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	93.1
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	92.09
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	91.86
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	87.67
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	86.3
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	84.57
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	81.69
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	80.93

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-41  Score=361.46  Aligned_cols=316  Identities=20%  Similarity=0.237  Sum_probs=235.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      -||||+||+.|+.++|++|+++|+++|.+|..|+||||+|+..|+.++|++| .+|++++..+..+.++++.++......
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            3999999999999999999999999999999999999999999999999999 999999998888887776655333221


Q ss_pred             C-------CCCCC--CCCCCCcccc---------cccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCC
Q psy2733          80 R-------PSNLP--KVEPETPMLN---------MKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNI  134 (644)
Q Consensus        80 ~-------~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~  134 (644)
                      .       .....  ..........         ..............+..+.++++.+.       ++.|+++|++++.
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            1       00000  0000000000         01111222223334455555665553       5666666666666


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccC---------------------------------CCCCcHHHHHH
Q psy2733         135 QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN---------------------------------SKGFNILNYAV  181 (644)
Q Consensus       135 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d---------------------------------~~g~tpL~~A~  181 (644)
                      .+.+|.+|||+|+..|+.+++++|+. .|++++..+                                 ..|.|||++|+
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGG-GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHh-cCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH
Confidence            66666666666666666666666666 455554444                                 44556666666


Q ss_pred             HcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy2733         182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL  261 (644)
Q Consensus       182 ~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~L  261 (644)
                      ..++.++++.++..+.....  .+..|.|||+.|+..++.+++++|++. |++++..+..+.||||.|+..++.++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~~~~~~l  316 (408)
T d1n11a_         240 QEGHAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFL  316 (408)
T ss_dssp             HTTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             HhCcHhHhhhhhcccccccc--ccCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhhcccCcceeeeee
Confidence            66666667766666554443  456788899999999999999999987 789999998999999999999999999999


Q ss_pred             HHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCC
Q psy2733         262 MLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQK  341 (644)
Q Consensus       262 l~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~T  341 (644)
                      ++.|+++|.+|.+|+||||+|++.++                               .+++++|+++|||++.+|.+|+|
T Consensus       317 l~~g~~in~~d~~G~T~Lh~A~~~g~-------------------------------~~iv~~Ll~~GAd~n~~d~~G~t  365 (408)
T d1n11a_         317 LQHQADVNAKTKLGYSPLHQAAQQGH-------------------------------TDIVTLLLKNGASPNEVSSDGTT  365 (408)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTC-------------------------------HHHHHHHHHTTCCSCCCCSSSCC
T ss_pred             ccccccccccCCCCCCHHHHHHHcCC-------------------------------HHHHHHHHHCCCCCCCCCCCCCC
Confidence            99999999999999999999999888                               78999999999999999999999


Q ss_pred             cchhhhcCCc
Q psy2733         342 PLDLILEDTS  351 (644)
Q Consensus       342 pL~~A~~~~~  351 (644)
                      |||+|++.++
T Consensus       366 ~L~~A~~~~~  375 (408)
T d1n11a_         366 PLAIAKRLGY  375 (408)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCC
Confidence            9999997664

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=307.39  Aligned_cols=283  Identities=22%  Similarity=0.244  Sum_probs=217.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhcccc----
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTT----   75 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~----   75 (644)
                      +||||+|+..|+.++|++||++|++++.+|.+|+||||+|+..|+.+++++| ....+..........+.......    
T Consensus        34 ~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (408)
T d1n11a_          34 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE  113 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccc
Confidence            6999999999999999999999999999999999999999999999999998 66655544322221111111000    


Q ss_pred             -----ccccCCCCCCCCCCCCc---------ccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCC
Q psy2733          76 -----EKVQRPSNLPKVEPETP---------MLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNI  134 (644)
Q Consensus        76 -----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~  134 (644)
                           .................         ...++.+...+......+..+.+||++|+       +++|+++|++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~  193 (408)
T d1n11a_         114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS  193 (408)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC
T ss_pred             cccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccc
Confidence                 00000111111111111         11123334444455556666667776664       5666666666654


Q ss_pred             CC---------------------------------CCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHH
Q psy2733         135 QD---------------------------------NNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV  181 (644)
Q Consensus       135 ~d---------------------------------~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~  181 (644)
                      .+                                 ..|.||||+|+..++.+++++++. .+...+..+..|.|||+.|+
T Consensus       194 ~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~l~~a~  272 (408)
T d1n11a_         194 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVA  272 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhc-cccccccccCCCCChhhhhh
Confidence            44                                 445566677777777888888887 67788888999999999999


Q ss_pred             HcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy2733         182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL  261 (644)
Q Consensus       182 ~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~L  261 (644)
                      ..++.+++++|++.++++..  .+..+.||||.|+..++.++++++++. |+++|.+|.+|+||||+|++.|+.++|++|
T Consensus       273 ~~~~~~i~~~Ll~~g~~~~~--~~~~~~t~L~~~~~~~~~~~~~~ll~~-g~~in~~d~~G~T~Lh~A~~~g~~~iv~~L  349 (408)
T d1n11a_         273 QEGHVPVADVLIKHGVMVDA--TTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLL  349 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTC--CCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hcCcHHHHHHHHHCCCcccc--ccccccccchhhcccCcceeeeeeccc-cccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999988765  446789999999999999999999998 899999999999999999999999999999


Q ss_pred             HHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         262 MLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       262 l~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      +++|+|+|.+|.+|+||||+|+.+|+
T Consensus       350 l~~GAd~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         350 LKNGASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             HHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999999

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-34  Score=288.31  Aligned_cols=225  Identities=25%  Similarity=0.269  Sum_probs=176.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC---CcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGAC---VYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEK   77 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~---~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~   77 (644)
                      +||||+||++|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++                          
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~--------------------------   63 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK--------------------------   63 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHH--------------------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccc--------------------------
Confidence            6999999999999999999999988   66788999999999999999999987                          


Q ss_pred             ccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy2733          78 VQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL  157 (644)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~  157 (644)
                                                                     |+++|++++.+|.+|.||||+|+..++.+++++
T Consensus        64 -----------------------------------------------Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~   96 (255)
T d1oy3d_          64 -----------------------------------------------LYAAGAGVLVAERGGHTALHLACRVRAHTCACV   96 (255)
T ss_dssp             -----------------------------------------------HHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHH
T ss_pred             -----------------------------------------------cccccccccccccccchhhhhhhccCchHHHHH
Confidence                                                           788899999999999999999999999999999


Q ss_pred             HhcCCCCCccccC----------CCCCcHHHHHHHcCCHHHH--HHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHH
Q psy2733         158 LLSHPEVNLYLEN----------SKGFNILNYAVLRGNMKVT--EKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE  225 (644)
Q Consensus       158 Ll~~~~~~~~~~d----------~~g~tpL~~A~~~g~~~~v--~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~  225 (644)
                      |++. ........          ..+.+.+..+.........  ...+..........++..|.||||+|+..++.++++
T Consensus        97 Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~  175 (255)
T d1oy3d_          97 LLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR  175 (255)
T ss_dssp             HSSS-CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHhh-ccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccccccccc
Confidence            9984 32221110          0111111111111111000  111111112222235688999999999999999999


Q ss_pred             HHHHhcCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHh
Q psy2733         226 LLVEKYKVNINA-LDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE  304 (644)
Q Consensus       226 ~Ll~~~g~~in~-~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~  304 (644)
                      +|++. +.+.+. .+..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..++                 
T Consensus       176 ~Ll~~-~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~-----------------  237 (255)
T d1oy3d_         176 LLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN-----------------  237 (255)
T ss_dssp             HHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC-----------------
T ss_pred             chhcc-cccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC-----------------
Confidence            99998 566664 56789999999999999999999999999999999999999999999999                 


Q ss_pred             hhhcCCCCCccchHHHHHHHHHHcCCC
Q psy2733         305 YLSVGGPSNEHGILLAVFLFLVKHGAP  331 (644)
Q Consensus       305 ~~~~~~~~~~~~~~~~iv~~Ll~~Gad  331 (644)
                                    .+++++|+++||+
T Consensus       238 --------------~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         238 --------------PILARLLRAHGAP  250 (255)
T ss_dssp             --------------HHHHHHHHHTTCC
T ss_pred             --------------HHHHHHHHHcCCC
Confidence                          7799999999997

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-34  Score=280.35  Aligned_cols=209  Identities=23%  Similarity=0.298  Sum_probs=190.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHH-HCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILL-ARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL-~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      .+.|+.+|+.|+++.|+.++ +.+++++.+|..|+||||+|+..|+.+++++|                           
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l---------------------------   56 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFL---------------------------   56 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHH---------------------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccc---------------------------
Confidence            36889999999999997766 55788999999999999999999999999984                           


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHh
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                    +..+.+....+..+.++++.|+..|+.+++++|+
T Consensus        57 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll   90 (223)
T d1uoha_          57 ----------------------------------------------LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL   90 (223)
T ss_dssp             ----------------------------------------------HHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             ----------------------------------------------cccccccccccccccccccccccccccchhHHHh
Confidence                                                          4444455556678899999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD  239 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d  239 (644)
                      + .+++++..|..|.||||+|+..|+.+++++|++.|.++..  .+..|.||||+|+..++.+++++|+.. +.+++.+|
T Consensus        91 ~-~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~--~~~~~~t~L~~a~~~~~~~~~~~L~~~-~~~i~~~d  166 (223)
T d1uoha_          91 G-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA--KDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQD  166 (223)
T ss_dssp             H-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCC
T ss_pred             c-cCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCccchhhhhcCCcchhhhhccc-cceeeecc
Confidence            9 7899999999999999999999999999999999988755  568899999999999999999999987 89999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       240 ~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      ..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|. .++
T Consensus       167 ~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         167 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTH
T ss_pred             CCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCC
Confidence            99999999999999999999999999999999999999999983 444

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=283.80  Aligned_cols=254  Identities=22%  Similarity=0.238  Sum_probs=215.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCC-CCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDD-AGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKV   78 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~-~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~   78 (644)
                      +|+||+|++.|++++|++|+++|+++|.++. .|+||||+|+..|+.+++++| ..+.....                  
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~------------------   67 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL------------------   67 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccc------------------
Confidence            3899999999999999999999999997764 699999999999999999999 77766655                  


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q psy2733          79 QRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGF  151 (644)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~  151 (644)
                                                    ....+.++.+.+.       ...++....+....+..|.|++++|+..|+
T Consensus        68 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~  117 (285)
T d1wdya_          68 ------------------------------RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  117 (285)
T ss_dssp             ------------------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             ------------------------------cccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcc
Confidence                                          4444555665553       666777887877888899999999999999


Q ss_pred             HHHHHHHhcCCCCCcc----------ccCCCCCcHHHHHHHcCCHHHHHHHHHh-cCCccCCcCCCCCchHHHHHHh---
Q psy2733         152 EEIQLLLLSHPEVNLY----------LENSKGFNILNYAVLRGNMKVTEKILAL-NRNLATVPKTSDGFTPLHVACF---  217 (644)
Q Consensus       152 ~~iv~~Ll~~~~~~~~----------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~d~~g~T~Lh~A~~---  217 (644)
                      ...+..++. ...+++          ..+..|.||||+|+..|+.+++++|++. +.++..  .+..|.++++.+..   
T Consensus       118 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~--~~~~~~~~~~~~~~~~~  194 (285)
T d1wdya_         118 VKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSD  194 (285)
T ss_dssp             HHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHHHHCSC
T ss_pred             hhhhhhhhh-hcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCccc--ccCCCCccccccccccc
Confidence            999988887 333333          2345699999999999999999999976 444433  45678777776544   


Q ss_pred             -cCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCcHHHHHHHcCCcccccccc
Q psy2733         218 -NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR-DVALDIQDIDGNGLLHFLFIKKNFYKTPITR  295 (644)
Q Consensus       218 -~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~-gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~  295 (644)
                       .+..+++++|++. |++++.+|..|.||||+|+..|+.+++++|++. |++++.+|.+|.||||+|+..++        
T Consensus       195 ~~~~~~i~~~Li~~-ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~--------  265 (285)
T d1wdya_         195 DSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL--------  265 (285)
T ss_dssp             TTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC--------
T ss_pred             chHHHHHHHHHHHC-CCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC--------
Confidence             3456799999998 899999999999999999999999999999975 99999999999999999999999        


Q ss_pred             cCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCC
Q psy2733         296 EKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENN  337 (644)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~  337 (644)
                                             .+++++|+++|||+|.+|.
T Consensus       266 -----------------------~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         266 -----------------------KKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             -----------------------HHHHHHHHHHSSCSCCSSC
T ss_pred             -----------------------HHHHHHHHHCCCCCCcccC
Confidence                                   7899999999999999884

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.4e-34  Score=290.83  Aligned_cols=243  Identities=24%  Similarity=0.231  Sum_probs=207.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      ||||.||..|++++|++||++|+++|.+|.+|+||||+|+.+|+.++|++                              
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~------------------------------   91 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF------------------------------   91 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHH------------------------------
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeee------------------------------
Confidence            79999999999999999999999999999999999999999999999987                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |+++|++.+..+..+.+||++|+..++.++++.|++ 
T Consensus        92 -------------------------------------------Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~-  127 (291)
T d1s70b_          92 -------------------------------------------LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS-  127 (291)
T ss_dssp             -------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             -------------------------------------------ecccccccccccccccccccccccccccchhhcccc-
Confidence                                                       677777777788899999999999999999999999 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCC
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK  241 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~  241 (644)
                      .+...+..+..+.+++++|+..+..+.++.++........        .................+... ..+....+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  198 (291)
T d1s70b_         128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE--------AARKEEERIMLRDARQWLNSG-HINDVRHAKS  198 (291)
T ss_dssp             TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHH--------HHHHHHHHHHHHHHHHHHHHT-CCCCCCCTTT
T ss_pred             cCcccccccccCccccccccccccchhccccccccccccc--------cccccccccccccchhhhccc-ccccccccCC
Confidence            7889999999999999999999999999999875532211        111111111122333334433 5667778899


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHH
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV  321 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  321 (644)
                      |.||||+|+..|+.+++++|++.|+++|.+|.+|+||||+|+..|+                               .++
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~-------------------------------~~i  247 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK-------------------------------EEA  247 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC-------------------------------HHH
T ss_pred             CCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCC-------------------------------HHH
Confidence            9999999999999999999999999999999999999999999998                               779


Q ss_pred             HHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHHHHHHHh
Q psy2733         322 FLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHA  360 (644)
Q Consensus       322 v~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~~~  360 (644)
                      +++|+++|||++.+|..|+||||+|++  ++++.|.++.
T Consensus       248 v~lLl~~Gadv~~~d~~G~TaL~~A~e--~~~~~L~~~~  284 (291)
T d1s70b_         248 CRILVENLCDMEAVNKVGQTAFDVADE--DILGYLEELQ  284 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCTTTSCCS--GGGHHHHHHH
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHH--HHHHHHHHHh
Confidence            999999999999999999999999984  5666665543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=277.11  Aligned_cols=221  Identities=22%  Similarity=0.221  Sum_probs=196.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQ   79 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~-Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~   79 (644)
                      .||||+||+.|+.++|+.|++. +.+++.+|.+|+||||+|+..|+.+++++|                           
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~L---------------------------   53 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL---------------------------   53 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH---------------------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchh---------------------------
Confidence            5899999999999999999885 678999999999999999999999999984                           


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCC---CCCCCCCcHHHHHHHcCCHHHHH
Q psy2733          80 RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVN---IQDNNQDTPMHDAVAKGFEEIQL  156 (644)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n---~~d~~G~TpL~~A~~~g~~~iv~  156 (644)
                                                                    +++|++++   ..+..|.+|+|+|+..+..++++
T Consensus        54 ----------------------------------------------l~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (229)
T d1ixva_          54 ----------------------------------------------LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK   87 (229)
T ss_dssp             ----------------------------------------------HTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             ----------------------------------------------hhhhcccccccccccccccccccccccccccccc
Confidence                                                          44555544   34568999999999999999999


Q ss_pred             HHhcCCCC--CccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCC
Q psy2733         157 LLLSHPEV--NLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN  234 (644)
Q Consensus       157 ~Ll~~~~~--~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~  234 (644)
                      .++. .+.  +....+..+.|+++.++..++.++++.|+..+.....  .+..|+||||+|+..|+.+++++|++..+.+
T Consensus        88 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  164 (229)
T d1ixva_          88 SLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFNQIPLHRAASVGSLKLIELLCGLGKSA  164 (229)
T ss_dssp             HHHS-SSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC
T ss_pred             cccc-ccccccccccccccccccccccccchhhhhhhhhhhcccccc--cCCCCCCccchhhhccccccccccccccccc
Confidence            9887 454  3455677899999999999999999999998877655  5688999999999999999999999986689


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCC
Q psy2733         235 INALDLKKRTPLMAAVGQGQTSVINYLML-RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSN  313 (644)
Q Consensus       235 in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~-~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (644)
                      ++.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|+.                             
T Consensus       165 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-----------------------------  215 (229)
T d1ixva_         165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-----------------------------  215 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC-----------------------------
T ss_pred             ccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh-----------------------------
Confidence            99999999999999999999999999996 599999999999999999872                             


Q ss_pred             ccchHHHHHHHHHHcCCC
Q psy2733         314 EHGILLAVFLFLVKHGAP  331 (644)
Q Consensus       314 ~~~~~~~iv~~Ll~~Gad  331 (644)
                           .+++++|+++|+|
T Consensus       216 -----~~~~~~Ll~~g~d  228 (229)
T d1ixva_         216 -----EQVKKFFLNNVVD  228 (229)
T ss_dssp             -----HHHHHHHHHHCCC
T ss_pred             -----HHHHHHHHHcCCC
Confidence                 3589999999997

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-32  Score=268.90  Aligned_cols=199  Identities=25%  Similarity=0.353  Sum_probs=182.1

Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCc
Q psy2733         124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVP  203 (644)
Q Consensus       124 ~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  203 (644)
                      +|.+.+.+++.+|.+|+||||+|+..|+.+++++|+. .+......+..+.++++.|+..|+.++++.|++.+.++..  
T Consensus        22 ~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~--   98 (223)
T d1uoha_          22 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA--   98 (223)
T ss_dssp             HHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--
T ss_pred             HHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccc-cccccccccccccccccccccccccchhHHHhccCceeEe--
Confidence            3666777888899999999999999999999999999 6788888888999999999999999999999999987654  


Q ss_pred             CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHH
Q psy2733         204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLF  283 (644)
Q Consensus       204 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~  283 (644)
                      .|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..++.+++++|++.|.+++.+|.+|+||||+|+
T Consensus        99 ~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa  177 (223)
T d1uoha_          99 VNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC  177 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH
T ss_pred             eCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceecccc
Confidence            668999999999999999999999998 8999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCcHHHHHHHH
Q psy2733         284 IKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEH  359 (644)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~~  359 (644)
                      ..++                               .+++++|+++|||++.+|.+|+||||+|. . +....+..+
T Consensus       178 ~~g~-------------------------------~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~-~~~~i~~~L  220 (223)
T d1uoha_         178 DEER-------------------------------VEEAKLLVSQGASIYIENKEEKTPLQVAK-G-GLGLILKRM  220 (223)
T ss_dssp             HTTC-------------------------------HHHHHHHHHTTCCSCCCCTTSCCHHHHCC-T-THHHHHHHH
T ss_pred             ccCc-------------------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHH-C-CCHHHHhcc
Confidence            9998                               77999999999999999999999999996 3 333344433

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-33  Score=284.85  Aligned_cols=238  Identities=16%  Similarity=0.215  Sum_probs=160.5

Q ss_pred             CcHHHHHHHc-CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hh--------ccCCCccchhhhhhhh
Q psy2733           1 KTLLHILAYQ-GCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SH--------VSGANRSRKHIYKERH   70 (644)
Q Consensus         1 ~TpLh~Aa~~-G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~--------~a~~~~~~~~~~~~~~   70 (644)
                      +||||+|+.. |+.++++.|.+.++++.. +.+|+||||+|+..|+.++|++| .+        |+++|.          
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~----------   69 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA----------   69 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC----------
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc----------
Confidence            5899966554 777888888888777532 24699999999999999999876 32        223332          


Q ss_pred             hccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHH
Q psy2733          71 RTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPM  143 (644)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL  143 (644)
                                                            ++..|.||||+|+       +++|+++|++++.+|.+|.|||
T Consensus        70 --------------------------------------~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          70 --------------------------------------MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             --------------------------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             --------------------------------------cCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence                                                  4444445555543       4444555555554444455555


Q ss_pred             HHHHHcCCHHHHHHHhcCCC--CCccccCCCCCcHHHHHHHcCCHH---HHHHHHHhcCCc------cCCcCCCCCchHH
Q psy2733         144 HDAVAKGFEEIQLLLLSHPE--VNLYLENSKGFNILNYAVLRGNMK---VTEKILALNRNL------ATVPKTSDGFTPL  212 (644)
Q Consensus       144 ~~A~~~g~~~iv~~Ll~~~~--~~~~~~d~~g~tpL~~A~~~g~~~---~v~~Ll~~~~~~------~~~~~d~~g~T~L  212 (644)
                      ++|+..++.++++.+.....  ..++..+..+.++.+.+...+..+   .+..+.......      .....+..|+|||
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            55555554444444443100  122333444444444444443222   222222211110      0111246789999


Q ss_pred             HHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         213 HVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       213 h~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      |+++..++.+++++++...+.+++.+|..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC
Confidence            999999999999998877789999999999999999999999999999999999999999999999999999999

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-31  Score=261.96  Aligned_cols=200  Identities=24%  Similarity=0.277  Sum_probs=180.0

Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccc---cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccC
Q psy2733         125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYL---ENSKGFNILNYAVLRGNMKVTEKILALNRNLAT  201 (644)
Q Consensus       125 Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~---~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  201 (644)
                      |...+.+++.+|.+|+||||+|+..|+.+++++|++ .|++++.   .+..|.+|+|+|+..+..++++.++..+.....
T Consensus        20 l~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (229)
T d1ixva_          20 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL   98 (229)
T ss_dssp             HHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHT-TCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCT
T ss_pred             HHcCCCcccccCCCCCCHHHHHHHcCCccccchhhh-hhccccccccccccccccccccccccccccccccccccccccc
Confidence            334556677889999999999999999999999999 6888764   567899999999999999999999998887766


Q ss_pred             CcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCcHHH
Q psy2733         202 VPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD-VALDIQDIDGNGLLH  280 (644)
Q Consensus       202 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~g-advn~~d~~G~T~Lh  280 (644)
                      ...+..+.|+++.++..++.+++++|+.. +.+.+..|..|+||||+|+..|+.+++++|++.| .+++.+|.+|+||||
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh  177 (229)
T d1ixva_          99 NKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF  177 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHH
T ss_pred             cccccccccccccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchh
Confidence            66778899999999999999999999998 7999999999999999999999999999999987 789999999999999


Q ss_pred             HHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHH-cCCCCCCCCCCCCCcchhhhcCCcHHHHHHH
Q psy2733         281 FLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK-HGAPLSLENNNRQKPLDLILEDTSLLNEIME  358 (644)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~-~Gadi~~~n~~G~TpL~~A~~~~~~~~~l~~  358 (644)
                      +|+..++                               .+++++|++ .|+|++.+|.+|+||||+|+ +.++++.|++
T Consensus       178 ~A~~~~~-------------------------------~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~-~~~~~~~Ll~  224 (229)
T d1ixva_         178 HALAEGH-------------------------------GDAAVLLVEKYGAEYDLVDNKGAKAEDVAL-NEQVKKFFLN  224 (229)
T ss_dssp             HHHHTTC-------------------------------HHHHHHHHHHHCCCSCCCCTTSCCTGGGCS-CHHHHHHHHH
T ss_pred             hhccccc-------------------------------HHHHHHHHHhcCCCCCCcCCCCCCHHHHHh-hHHHHHHHHH
Confidence            9999998                               779999996 59999999999999999999 5566666654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=2.2e-32  Score=272.53  Aligned_cols=232  Identities=19%  Similarity=0.189  Sum_probs=178.2

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccC
Q psy2733          27 YYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED  105 (644)
Q Consensus        27 n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (644)
                      +..|++|+||||+|++.|+.+++++| ..+++...                                             
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~---------------------------------------------   37 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY---------------------------------------------   37 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG---------------------------------------------
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCccc---------------------------------------------
Confidence            45689999999999999999999985 44444322                                             


Q ss_pred             CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCC
Q psy2733         106 MLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN  185 (644)
Q Consensus       106 ~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  185 (644)
                                                ++.+|..|.||||+|+..|+.+++++|++ .|++++..|.+|.||||+|+..++
T Consensus        38 --------------------------i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~i~~~d~~g~tpL~~A~~~~~   90 (255)
T d1oy3d_          38 --------------------------LDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRA   90 (255)
T ss_dssp             --------------------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCHHHHHTTTTC
T ss_pred             --------------------------ccCcCCCCCCccchHHhhccccccccccc-ccccccccccccchhhhhhhccCc
Confidence                                      45678899999999999999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHhcCCccCCcCC--------CCCchH---HHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC
Q psy2733         186 MKVTEKILALNRNLATVPKT--------SDGFTP---LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ  254 (644)
Q Consensus       186 ~~~v~~Ll~~~~~~~~~~~d--------~~g~T~---Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~  254 (644)
                      .++++.|++..........+        ..+.+.   +..............+....+.+++.+|..|.||||+|+..|+
T Consensus        91 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~  170 (255)
T d1oy3d_          91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD  170 (255)
T ss_dssp             HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTC
T ss_pred             hHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccc
Confidence            99999998866543221110        001111   1111111112222222223367788999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcc-cCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCC
Q psy2733         255 TSVINYLMLRDVALDIQ-DIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLS  333 (644)
Q Consensus       255 ~~iv~~Ll~~gadvn~~-d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~  333 (644)
                      .+++++|++.|++.+.. +..|.||||+|+..++                               .+++++|+++|++++
T Consensus       171 ~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~-------------------------------~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA-------------------------------ASVLELLLKAGADPT  219 (255)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-------------------------------HHHHHHHHHTTCCTT
T ss_pred             cccccchhcccccccccccccccccccccccccH-------------------------------HHHHHHHHHCCCCCC
Confidence            99999999999998865 5789999999999998                               779999999999999


Q ss_pred             CCCCCCCCcchhhhcCC--cHHHHHHHHhh
Q psy2733         334 LENNNRQKPLDLILEDT--SLLNEIMEHAR  361 (644)
Q Consensus       334 ~~n~~G~TpL~~A~~~~--~~~~~l~~~~~  361 (644)
                      .+|..|+||||+|++.+  ++++.|++.+.
T Consensus       220 ~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         220 ARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             CCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999654  45555665444

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-30  Score=246.61  Aligned_cols=212  Identities=22%  Similarity=0.283  Sum_probs=190.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHH----CCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccc
Q psy2733           1 KTLLHILAYQGCVEELNILLA----RGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTE   76 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~----~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~   76 (644)
                      +||||+||..|+.++|++|++    .|++++.+|.+|+||||+|+..|+.+++++                         
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~-------------------------   58 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL-------------------------   58 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH-------------------------
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccc-------------------------
Confidence            699999999999999999885    799999999999999999999999999987                         


Q ss_pred             cccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy2733          77 KVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL  156 (644)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~  156 (644)
                                                                      |+++|++++..+..|.++++.|...++.++++
T Consensus        59 ------------------------------------------------Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (228)
T d1k1aa_          59 ------------------------------------------------LVTAGASPMALDRHGQTAAHLACEHRSPTCLR   90 (228)
T ss_dssp             ------------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ------------------------------------------------cccccccccccccccccccccccccccccchh
Confidence                                                            77888888888899999999999999999888


Q ss_pred             HHhcC---CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCC
Q psy2733         157 LLLSH---PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKV  233 (644)
Q Consensus       157 ~Ll~~---~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~  233 (644)
                      .+...   .....+.......++|+.+.........+.|........... ...|.++|+.|+..+...+++.+++. |.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~~~~~-~~  168 (228)
T d1k1aa_          91 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD-IKSGRSPLIHAVENNSLSMVQLLLQH-GA  168 (228)
T ss_dssp             HHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             hhhhccccccccccccccccccccccccccccchhhhhhhcccccccccc-ccchhhHHHHHHHhhhhhhhhhhhhh-cc
Confidence            77552   122344556678899999999999999999988777655443 37899999999999999999999998 79


Q ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       234 ~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      +++.+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+.+++
T Consensus       169 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999998776

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.6e-29  Score=239.07  Aligned_cols=219  Identities=24%  Similarity=0.271  Sum_probs=193.9

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccCCCCCC
Q psy2733          31 DAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP  110 (644)
Q Consensus        31 ~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (644)
                      .+|+||||+|+..|+.++++.|                                                          
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~L----------------------------------------------------------   22 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRL----------------------------------------------------------   22 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHH----------------------------------------------------------
T ss_pred             CCCccHHHHHHHcCCHHHHHHH----------------------------------------------------------
Confidence            3699999999999999999985                                                          


Q ss_pred             cccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q psy2733         111 SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE  190 (644)
Q Consensus       111 ~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  190 (644)
                                 ++.+.+.|+++|..|.+|+||||+|+..|+.+++++|++ .+++.+..+..|.++++.|...++..+++
T Consensus        23 -----------l~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~a~~~~~~~~~~   90 (228)
T d1k1aa_          23 -----------VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLR   90 (228)
T ss_dssp             -----------HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             -----------HHHHHHCCCCCCccCCCCCccceehhccccccccccccc-ccccccccccccccccccccccccccchh
Confidence                       234778999999999999999999999999999999999 79999999999999999999999999999


Q ss_pred             HHHHhcCCccC--CcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Q psy2733         191 KILALNRNLAT--VPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVAL  268 (644)
Q Consensus       191 ~Ll~~~~~~~~--~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadv  268 (644)
                      .+.........  ......+.++|+.+.........+.|...........+..|.++|+.|+..+...+++.+++.|.++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~  170 (228)
T d1k1aa_          91 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV  170 (228)
T ss_dssp             HHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             hhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc
Confidence            88776543221  2233567899999999999999999988743444556678999999999999999999999999999


Q ss_pred             CcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhc
Q psy2733         269 DIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILE  348 (644)
Q Consensus       269 n~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~  348 (644)
                      +.+|..|.||||+|+..++                               .+++++|+++|||++.+|.+|+||||+|++
T Consensus       171 ~~~d~~g~t~L~~A~~~g~-------------------------------~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         171 NAQMYSGSSALHSASGRGL-------------------------------LPLVRTLVRSGADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             TCBCTTSCBHHHHHHHHTC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             ccccccCcchHHHHHHcCC-------------------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            9999999999999999998                               779999999999999999999999999994


Q ss_pred             CC
Q psy2733         349 DT  350 (644)
Q Consensus       349 ~~  350 (644)
                      .+
T Consensus       220 ~~  221 (228)
T d1k1aa_         220 RR  221 (228)
T ss_dssp             HH
T ss_pred             CC
Confidence            33

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.1e-29  Score=255.39  Aligned_cols=213  Identities=20%  Similarity=0.224  Sum_probs=178.0

Q ss_pred             CcHHHHHHHcCCHHHHHHH--------HHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhh
Q psy2733           1 KTLLHILAYQGCVEELNIL--------LARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHR   71 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~L--------L~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~   71 (644)
                      +||||+||..|+.++|++|        ++.||++|.+|.+|+||||+|+..|+.++|++| .+|++++.           
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~-----------  102 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-----------  102 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-----------
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccc-----------
Confidence            6999999999999999877        567999999999999999999999999999999 89999887           


Q ss_pred             ccccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHH-------HHHHHhCC---CCCCCCCCCCCc
Q psy2733          72 TVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ-------DFVLLRNG---CNVNIQDNNQDT  141 (644)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-------v~~Ll~~g---ad~n~~d~~G~T  141 (644)
                                                           .+..|.|+++++.       .+.+...+   ..++..+..+.+
T Consensus       103 -------------------------------------~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  145 (277)
T d2fo1e1         103 -------------------------------------YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT  145 (277)
T ss_dssp             -------------------------------------CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             -------------------------------------ccccccccccchhhhcchhhhhhhhhcccccccccccccccch
Confidence                                                 7778889999885       44444433   456777888999


Q ss_pred             HHHHHHHcCCHH---HHHHHhcC-------CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchH
Q psy2733         142 PMHDAVAKGFEE---IQLLLLSH-------PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP  211 (644)
Q Consensus       142 pL~~A~~~g~~~---iv~~Ll~~-------~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~  211 (644)
                      +.+.+...+..+   .+..+...       .....+..+..|.||||+++..++.++++.++........ ..|..|+||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~-~~d~~g~tp  224 (277)
T d2fo1e1         146 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-KQDEDGKTP  224 (277)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT-CCCTTCCCH
T ss_pred             hHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccc-ccCCCCCCH
Confidence            999999887543   33333331       1223455677899999999999999999987765544333 356899999


Q ss_pred             HHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2733         212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML  263 (644)
Q Consensus       212 Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~  263 (644)
                      ||+|+..|+.++|++|++. |++++.+|.+|+||||+|++.|+.+++++|++
T Consensus       225 L~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         225 IMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999998 89999999999999999999999999999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=6.1e-29  Score=239.65  Aligned_cols=199  Identities=28%  Similarity=0.293  Sum_probs=182.0

Q ss_pred             HHHHHHHHHCCCCCcc-cCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCC
Q psy2733          13 VEELNILLARGACVYY-PDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPET   91 (644)
Q Consensus        13 ~e~vk~LL~~Ga~~n~-~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (644)
                      .|+|++|+++|+++|. .|.+|+||||+|++.|+.+++++                                        
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~----------------------------------------   41 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKR----------------------------------------   41 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHH----------------------------------------
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHH----------------------------------------
Confidence            5899999999999997 59999999999999999999987                                        


Q ss_pred             cccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCC
Q psy2733          92 PMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS  171 (644)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~  171 (644)
                                                       |++.|+++|..+..+.++++.++..++....................
T Consensus        42 ---------------------------------Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (209)
T d1ot8a_          42 ---------------------------------LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMH   88 (209)
T ss_dssp             ---------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT
T ss_pred             ---------------------------------HHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence                                             78888888889999999999999999988877777655555556677


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHH
Q psy2733         172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG  251 (644)
Q Consensus       172 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~  251 (644)
                      .|.++.+.+.........+.|...+.++..  .+..|+|||++|+..+..++++.+++. +.+++..|..|.||||+|+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~--~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A~~  165 (209)
T d1ot8a_          89 DGTTPLILAARLAIEGMVEDLITADADINA--ADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLFLAAR  165 (209)
T ss_dssp             TCCCHHHHHHHTTCTTHHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhcccccc--cCCCCCCcchhhcccCcceeeeeeccc-cccccccccccccccchhcc
Confidence            889999999999999999999998887655  457899999999999999999999998 79999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         252 QGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       252 ~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .|+.+++++|+++|+|++.+|.+|+||||+|+.+++
T Consensus       166 ~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         166 EGSYEASKALLDNFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            999999999999999999999999999999999999

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.9e-28  Score=242.86  Aligned_cols=250  Identities=18%  Similarity=0.209  Sum_probs=217.1

Q ss_pred             CCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCcccccccccccccCCCCCC
Q psy2733          32 AGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP  110 (644)
Q Consensus        32 ~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (644)
                      ++.|+||+|++.|+.++|++| .+|++++.                                               ..+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~-----------------------------------------------~~~   36 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF-----------------------------------------------QEE   36 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC-----------------------------------------------CCT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCc-----------------------------------------------cCC
Confidence            357999999999999999999 99999875                                               034


Q ss_pred             cccchhhHHHH-------HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHc
Q psy2733         111 SAECSGILIKQ-------DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR  183 (644)
Q Consensus       111 ~~~~t~L~~a~-------v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  183 (644)
                      ..|.||||+|+       +++|++.|...+..+..+.+|.++|...+..+....++. ...+....+..+.+++++|+..
T Consensus        37 ~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~  115 (285)
T d1wdya_          37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhh-hcccccccccCCCchhHHHHHh
Confidence            57899999996       899999999999999999999999999999999999998 5666667788999999999999


Q ss_pred             CCHHHHHHHHHhcCCccCCc--------CCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC--
Q psy2733         184 GNMKVTEKILALNRNLATVP--------KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQG--  253 (644)
Q Consensus       184 g~~~~v~~Ll~~~~~~~~~~--------~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g--  253 (644)
                      ++...++.++..........        .+..|.||||+|++.|+.+++++|+++.|++++..+..|.++++.+...+  
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~  195 (285)
T d1wdya_         116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             cchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccc
Confidence            99999999998766544322        23568999999999999999999999889999999999999988776544  


Q ss_pred             --CHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHH-cCC
Q psy2733         254 --QTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK-HGA  330 (644)
Q Consensus       254 --~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~-~Ga  330 (644)
                        ..+++++|+++|++++.+|..|.||||+|+..++                               .+++++|++ .|+
T Consensus       196 ~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~-------------------------------~~~v~~lL~~~g~  244 (285)
T d1wdya_         196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-------------------------------LGLVQRLLEQEHI  244 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC-------------------------------HHHHHHHHHSSSC
T ss_pred             hHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCc-------------------------------HHHHHHHHHcCCC
Confidence              4579999999999999999999999999999998                               779999997 599


Q ss_pred             CCCCCCCCCCCcchhhhcCCc--HHHHHHHHh
Q psy2733         331 PLSLENNNRQKPLDLILEDTS--LLNEIMEHA  360 (644)
Q Consensus       331 di~~~n~~G~TpL~~A~~~~~--~~~~l~~~~  360 (644)
                      +++.+|.+|+||||+|++.++  +++.|++.+
T Consensus       245 din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         245 EINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999996653  444444443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=245.17  Aligned_cols=174  Identities=22%  Similarity=0.232  Sum_probs=154.2

Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccC---
Q psy2733         125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLAT---  201 (644)
Q Consensus       125 Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~---  201 (644)
                      +...|+++|.+|.+|+||||+|+..|+.+++++|++ .|++++..|..|.|||++|+..|+.++++.|+..+.....   
T Consensus        25 ~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~-~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  103 (221)
T d1iknd_          25 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI  103 (221)
T ss_dssp             ----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG
T ss_pred             HHhCCCCcccCCCCCCcccccccccccccccccccc-ccccccccccccccccccccccccccccchhhhhccccccccc
Confidence            677899999999999999999999999999999999 7999999999999999999999999999999987654322   


Q ss_pred             -CcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHH
Q psy2733         202 -VPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL  279 (644)
Q Consensus       202 -~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d-~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~L  279 (644)
                       ......|.||||.|+..++.+++++|+.. |..++..+ .+|.||||+|+..|+.+++++|+++|+|++.+|.+|+|||
T Consensus       104 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl  182 (221)
T d1iknd_         104 LKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY  182 (221)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGG
T ss_pred             ccccccccchhhhHHhhcCChhheeeeccc-CcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHH
Confidence             12235689999999999999999999988 67777765 6799999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCC
Q psy2733         280 HFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAP  331 (644)
Q Consensus       280 h~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gad  331 (644)
                      |+|+..++                               .+++++|++.+.+
T Consensus       183 ~~A~~~~~-------------------------------~~~~~~l~~~~~~  203 (221)
T d1iknd_         183 QLTWGRPS-------------------------------TRIQQQLGQLTLE  203 (221)
T ss_dssp             GGCTTSSC-------------------------------HHHHHHHHTTSCG
T ss_pred             HHHHHCCC-------------------------------HHHHHHHHHcCCc
Confidence            99999888                               6799999988754

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=246.01  Aligned_cols=191  Identities=22%  Similarity=0.338  Sum_probs=166.6

Q ss_pred             CcHHHHHHHcCCH----HHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccc
Q psy2733           1 KTLLHILAYQGCV----EELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTE   76 (644)
Q Consensus         1 ~TpLh~Aa~~G~~----e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~   76 (644)
                      +||||+|+..|+.    ++++++...|+++|.+|.+|+||||+|+..|+.+++++                         
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~-------------------------   57 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA-------------------------   57 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHC-------------------------
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccc-------------------------
Confidence            5999999999996    45556667899999999999999999999999999987                         


Q ss_pred             cccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy2733          77 KVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL  156 (644)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~  156 (644)
                                                                      |++.|++++..|..|.|||++|+..|+.++++
T Consensus        58 ------------------------------------------------L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~   89 (221)
T d1iknd_          58 ------------------------------------------------LLGAGCDPELRDFRGNTPLHLACEQGCLASVG   89 (221)
T ss_dssp             ------------------------------------------------CCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ------------------------------------------------cccccccccccccccccccccccccccccccc
Confidence                                                            67788888899999999999999999999999


Q ss_pred             HHhcCCCCC------ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHh
Q psy2733         157 LLLSHPEVN------LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK  230 (644)
Q Consensus       157 ~Ll~~~~~~------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  230 (644)
                      .|+.. +..      .......|.||||.|+..++.++++.|+..+....... +.+|+||||+|++.|+.+++++|++.
T Consensus        90 ~l~~~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~G~T~L~~A~~~g~~~~v~~Ll~~  167 (221)
T d1iknd_          90 VLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-PCNGRTALHLAVDLQNPDLVSLLLKC  167 (221)
T ss_dssp             HHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             hhhhh-cccccccccccccccccchhhhHHhhcCChhheeeecccCccccccc-ccCCCCccccccccccHHHHHHHHhc
Confidence            99873 322      33445678999999999999999999999988776543 37899999999999999999999998


Q ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q psy2733         231 YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA  267 (644)
Q Consensus       231 ~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gad  267 (644)
                       |+|++.+|..|+||||+|+..++.+++++|++.+.+
T Consensus       168 -gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         168 -GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             -TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             -CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence             899999999999999999999999999999988655

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=4.6e-27  Score=226.31  Aligned_cols=198  Identities=23%  Similarity=0.200  Sum_probs=180.9

Q ss_pred             HHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCc
Q psy2733         121 QDFVLLRNGCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNL  199 (644)
Q Consensus       121 ~v~~Ll~~gad~n~-~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  199 (644)
                      ++++|+++|+|+|. .|.+|.||||+|+..|+.+++++|++ .|++++.++..+.++++.++..++..............
T Consensus         4 ~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~-~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
T d1ot8a_           4 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLD-AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN   82 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCC
T ss_pred             HHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHh-hccccccccccccccccccccccccccccccccccccc
Confidence            47899999999997 58999999999999999999999999 79999999999999999999999988877776655444


Q ss_pred             cCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHH
Q psy2733         200 ATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL  279 (644)
Q Consensus       200 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~L  279 (644)
                      ... ....|.++.+.+.........+.|... +.+++.++..|.|||++|+..+..++++.|++.+++++.+|.+|.|||
T Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          83 LNA-RMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             TTC-CCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             ccc-ccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence            333 336788999999999999999999987 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhhcCCcH
Q psy2733         280 HFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSL  352 (644)
Q Consensus       280 h~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~~~~~~  352 (644)
                      |+|+..|+                               .+++++|+++|||++.+|.+|+||||+|++.++.
T Consensus       161 ~~A~~~g~-------------------------------~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         161 FLAAREGS-------------------------------YEASKALLDNFANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             HHHHHTTC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chhccccH-------------------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999998                               7899999999999999999999999999976553

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=5.9e-27  Score=237.61  Aligned_cols=201  Identities=23%  Similarity=0.267  Sum_probs=167.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +||||+|+..|+.++|++|+++|++++..+..+.|||++|+..++.++++.                             
T Consensus        74 ~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~-----------------------------  124 (291)
T d1s70b_          74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY-----------------------------  124 (291)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH-----------------------------
T ss_pred             CcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhc-----------------------------
Confidence            599999999999999999999999999999999999999999999999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |+++|+..+..|..|.+++++|+..++.+.++.++.
T Consensus       125 --------------------------------------------l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~  160 (291)
T d1s70b_         125 --------------------------------------------LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (291)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccccCcccccccccCccccccccccccchhcccccc
Confidence                                                        667777778888999999999999999999999987


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCC
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL  240 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~  240 (644)
                      ..+.++......+..+..       ......+.....  .....+..|.||||+|+..|+.+++++|++. |+++|.+|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~din~~~~  230 (291)
T d1s70b_         161 RQGVDIEAARKEEERIML-------RDARQWLNSGHI--NDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDY  230 (291)
T ss_dssp             HHTCCHHHHHHHHHHHHH-------HHHHHHHHHTCC--CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCT
T ss_pred             cccccccccccccccccc-------ccchhhhccccc--ccccccCCCCChhhHHHHcCChhhhcccccc-eeccccccc
Confidence            444433322221111111       122222332222  2233457899999999999999999999998 899999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHH
Q psy2733         241 KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI  284 (644)
Q Consensus       241 ~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~  284 (644)
                      .|+||||+|+..|+.++|++|+++|+|++.+|.+|.||||+|++
T Consensus       231 ~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999964

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-25  Score=203.77  Aligned_cols=154  Identities=26%  Similarity=0.320  Sum_probs=110.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      ||||+||..|++++|++|+++|++++.+|.+|+||||+|+ .|+.+++++                              
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~------------------------------   51 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARR------------------------------   51 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHH------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccc------------------------------
Confidence            6899999999999999999999999999999999998875 678888876                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |+++|++++.++..|.++++.++..++.+.++.|++ 
T Consensus        52 -------------------------------------------Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-   87 (156)
T d1ihba_          52 -------------------------------------------LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-   87 (156)
T ss_dssp             -------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             -------------------------------------------ccccccccccccccCccccccccccccccccccccc-
Confidence                                                       677777777788888888888888888888888887 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCCCC
Q psy2733         162 PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK  241 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~  241 (644)
                      .+.+++..+..|.+|||+|+..                                   ++.+++++|+++++.+++.+|..
T Consensus        88 ~~~~~~~~~~~~~~~l~~a~~~-----------------------------------~~~~~~~~Ll~~~~~~~~~~d~~  132 (156)
T d1ihba_          88 FQADVNIEDNEGNLPLHLAAKE-----------------------------------GHLRVVEFLVKHTASNVGHRNHK  132 (156)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHT-----------------------------------TCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             cccccccccccccccccccccc-----------------------------------ccccccccccccccccccccCCC
Confidence            5655555555555555555544                                   44555555554434455555666


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCC
Q psy2733         242 KRTPLMAAVGQGQTSVINYLMLRD  265 (644)
Q Consensus       242 G~TpL~~Aa~~g~~~iv~~Ll~~g  265 (644)
                      |+||||+|+..|+.+++++|+++|
T Consensus       133 g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         133 GDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            666666666666666666666554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.9e-25  Score=202.03  Aligned_cols=152  Identities=20%  Similarity=0.272  Sum_probs=139.6

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCc
Q psy2733         141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH  220 (644)
Q Consensus       141 TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~  220 (644)
                      +|||+|+..|+.+++++|++ .|++++.+|..|.||||+|+ .|+.+++++|++.++++..  .+..|.++|+.++..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~-~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~--~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCcCccCCcccccccccc-ccccccccccccccccccc--ccccCcccccccccccc
Confidence            79999999999999999999 79999999999999999886 7899999999999988765  55789999999999999


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCcccCCCCcHHHHHHHcCCcccccccccC
Q psy2733         221 IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV-ALDIQDIDGNGLLHFLFIKKNFYKTPITREK  297 (644)
Q Consensus       221 ~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~ga-dvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~  297 (644)
                      .+.++.|++. +.+++..|..|.+|||+|+..++.+++++|+++|+ +++.+|.+|+||||+|+..++.++++++.+.
T Consensus        79 ~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          79 LDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999988 79999999999999999999999999999999876 8999999999999999999998887776543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=9.3e-27  Score=243.12  Aligned_cols=215  Identities=15%  Similarity=0.065  Sum_probs=157.2

Q ss_pred             CcHHHHHHHcCCHHHHHH---HHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhcccccc
Q psy2733           1 KTLLHILAYQGCVEELNI---LLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEK   77 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~---LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~   77 (644)
                      +||||+||++|+.+++++   |++.|++++.+|.+|+||||+|++.|+.++|++                          
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~--------------------------  144 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR--------------------------  144 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHH--------------------------
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHH--------------------------
Confidence            489999999999887766   789999999999999999999999999999988                          


Q ss_pred             ccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCC--CCCCcHHHHHHHcCCHHHH
Q psy2733          78 VQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQD--NNQDTPMHDAVAKGFEEIQ  155 (644)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d--~~G~TpL~~A~~~g~~~iv  155 (644)
                                                                     |++.|++++..+  .+|+||||+|+..|+.+++
T Consensus       145 -----------------------------------------------Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv  177 (346)
T d2ajaa1         145 -----------------------------------------------LCELAPTEIMAMIQAENYHAFRLAAENGHLHVL  177 (346)
T ss_dssp             -----------------------------------------------HHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHH
T ss_pred             -----------------------------------------------HHHcCCCccccccccCCCChhHHHHHHhhHHHH
Confidence                                                           667777776654  3689999999999999999


Q ss_pred             HHHhcCCCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccC-----CcCCCCCchHHHHHHhcCcHHHHHHH
Q psy2733         156 LLLLSHPEVNL---YLENSKGFNILNYAVLRGNMKVTEKILALNRNLAT-----VPKTSDGFTPLHVACFNDHIEIVELL  227 (644)
Q Consensus       156 ~~Ll~~~~~~~---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~d~~g~T~Lh~A~~~g~~~~v~~L  227 (644)
                      ++|++ .+...   +..+.++.||++.|+.+|+.+++++|++.+++...     ......+.++++.+...+..+....+
T Consensus       178 ~~Ll~-~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (346)
T d2ajaa1         178 NRLCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAF  256 (346)
T ss_dssp             HHHHH-SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHH-cCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHH
Confidence            99999 56544   34455677888899999999999999988754321     11123344566665555544443333


Q ss_pred             HHhc-CCCcccCCC-------CCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCcccCCCCcHHHHHHHcCCcc
Q psy2733         228 VEKY-KVNINALDL-------KKRTPLMAAVGQGQTSVINYLMLRDVA-----LDIQDIDGNGLLHFLFIKKNFY  289 (644)
Q Consensus       228 l~~~-g~~in~~d~-------~G~TpL~~Aa~~g~~~iv~~Ll~~gad-----vn~~d~~G~T~Lh~A~~~~~~~  289 (644)
                      .... ....+..+.       .+.++|+.|+..|+.+++++|++.+..     .+..+.+|+||||+|++.|+.+
T Consensus       257 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e  331 (346)
T d2ajaa1         257 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG  331 (346)
T ss_dssp             TTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTT
T ss_pred             HHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHH
Confidence            3210 111122221       235789999999999999999988764     3445568999999999999943

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.3e-24  Score=194.64  Aligned_cols=142  Identities=22%  Similarity=0.289  Sum_probs=132.7

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCc
Q psy2733         141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH  220 (644)
Q Consensus       141 TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~  220 (644)
                      +.|+.|+..|+.++++.|++..+.+++..|..|.||||+|+ .|+.++++.|++.+.++..  .+..|.+||+.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~--~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV--QDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccc--ccccccccccccccccc
Confidence            46999999999999999998778999999999999999987 4889999999999988765  45789999999999999


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         221 IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       221 ~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      .++++++++. +++++.+|..|.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..++
T Consensus        81 ~~~~~~~l~~-~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          81 LDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCC
T ss_pred             cccccccccc-ccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCC
Confidence            9999999998 7999999999999999999999999999887 789999999999999999999999

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8e-24  Score=194.37  Aligned_cols=149  Identities=26%  Similarity=0.363  Sum_probs=99.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           2 TLLHILAYQGCVEELNILLAR-GACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~-Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      +.||.||..|++++|++||+. |++++.+|..|+||||+|+. |+.+++++                             
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~-----------------------------   53 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALE-----------------------------   53 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHH-----------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccc-----------------------------
Confidence            358888888888888888875 67888888888888888764 67777765                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhc
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS  160 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~  160 (644)
                                                                  |++.+++++..+..|.+|+++++..++.++++++++
T Consensus        54 --------------------------------------------Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~   89 (156)
T d1bd8a_          54 --------------------------------------------LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE   89 (156)
T ss_dssp             --------------------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------------------------------cccccccccccccccccccccccccccccccccccc
Confidence                                                        666777777777778888888888888888888887


Q ss_pred             CCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHHHHH
Q psy2733         161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV  228 (644)
Q Consensus       161 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll  228 (644)
                       .+++++.+|..|.||||+|+..|+.+++++|+ .++++..  .|..|+||||+|+..|+.+++++|+
T Consensus        90 -~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~--~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          90 -HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR--RDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             -TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC--CCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             -cccccccccCCCCeeecccccccccccccccc-ccccccc--cCCCCCCHHHHHHHcCCHHHHHHHH
Confidence             56666666655555555555555555555443 2332221  2344444444444444444444444

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2e-23  Score=190.47  Aligned_cols=50  Identities=30%  Similarity=0.258  Sum_probs=40.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN   52 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL   52 (644)
                      ||||.||+.|+.++|++||++|++++ .|..|+||||+|+..++.+++..+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~   53 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVL   53 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccc
Confidence            78888888888888888888888776 578888888888888888877663

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-23  Score=191.86  Aligned_cols=143  Identities=22%  Similarity=0.265  Sum_probs=133.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCCCchHHHHHHhcC
Q psy2733         140 DTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFND  219 (644)
Q Consensus       140 ~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g  219 (644)
                      .||||.|++.|+.+++++|++ .|++++ .+..|+||||+|+..++.++++.++........  .+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~-~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMA-NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--RTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH-HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHH-cCCCcc-cccCCCccccccccccccccccccccccccccc--cccccccccccccccc
Confidence            499999999999999999999 688877 689999999999999999999999987766544  4467889999999999


Q ss_pred             cHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCC
Q psy2733         220 HIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN  287 (644)
Q Consensus       220 ~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~  287 (644)
                      +.+.+++++.. +++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.+|+
T Consensus        79 ~~~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          79 HANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cceeeeccccc-CCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCC
Confidence            99999999988 79999999999999999999999999999999999999999999999999999999

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.2e-24  Score=220.50  Aligned_cols=182  Identities=21%  Similarity=0.200  Sum_probs=108.8

Q ss_pred             CCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCH-------HHHHHHHHhcCCcc
Q psy2733         129 GCNVNIQ-DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNM-------KVTEKILALNRNLA  200 (644)
Q Consensus       129 gad~n~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~-------~~v~~Ll~~~~~~~  200 (644)
                      ++++|.. |.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||.|+..++.       ++++.+...   . 
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~---~-  170 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---L-  170 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---G-
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh---h-
Confidence            4455543 6667777777777777777777776 5677777777777777777765431       223322211   1 


Q ss_pred             CCcCCCCCchHHHHHHhcCc------------HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH---HCC
Q psy2733         201 TVPKTSDGFTPLHVACFNDH------------IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM---LRD  265 (644)
Q Consensus       201 ~~~~d~~g~T~Lh~A~~~g~------------~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll---~~g  265 (644)
                       ...|..|+||||+++..+.            ..++.+++.............+.++++.+........+..+.   ..+
T Consensus       171 -~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         171 -ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             -GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             -hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence             1134566777776664332            224455556544555556666777777666555443333221   113


Q ss_pred             CCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchh
Q psy2733         266 VALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDL  345 (644)
Q Consensus       266 advn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~  345 (644)
                      ..+|.+|.+|+||||+|++.++                               .+++++|+++|||++++|+.|+|||+|
T Consensus       250 ~~in~~D~~G~TpLh~A~~~g~-------------------------------~~iv~~Ll~~GAd~~~~n~~G~Tpl~~  298 (301)
T d1sw6a_         250 NMLNAQDSNGDTCLNIAARLGN-------------------------------ISIVDALLDYGADPFIANKSGLRPVDF  298 (301)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred             cCccCCCCCCCCHHHHHHHcCC-------------------------------HHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            3478899999999999999998                               779999999999999999999999999


Q ss_pred             hh
Q psy2733         346 IL  347 (644)
Q Consensus       346 A~  347 (644)
                      |+
T Consensus       299 A~  300 (301)
T d1sw6a_         299 GA  300 (301)
T ss_dssp             TC
T ss_pred             cC
Confidence            96

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=1.5e-26  Score=241.54  Aligned_cols=202  Identities=14%  Similarity=0.098  Sum_probs=131.7

Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHHhcCCccC
Q psy2733         124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN--SKGFNILNYAVLRGNMKVTEKILALNRNLAT  201 (644)
Q Consensus       124 ~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  201 (644)
                      .|++.|+++|..|.+|+||||+|++.|+.+++++|++ .|++++..+  .+|.||||+|+..|+.++|++|++.++....
T Consensus       111 ~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~  189 (346)
T d2ajaa1         111 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT  189 (346)
T ss_dssp             TC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH
T ss_pred             HHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccc
Confidence            3778888888888888999999999999999999998 688887765  4588999999999999999999988765422


Q ss_pred             C-cCCCCCchHHHHHHhcCcHHHHHHHHHhcCCCcccCC-------CCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCcc
Q psy2733         202 V-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD-------LKKRTPLMAAVGQGQTSVINYLMLRDVA--LDIQ  271 (644)
Q Consensus       202 ~-~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d-------~~G~TpL~~Aa~~g~~~iv~~Ll~~gad--vn~~  271 (644)
                      . ..+.+|.||+|.|+..|+.+++++|++. |++++..+       ..+.++++.+...+..+....+.....+  .+..
T Consensus       190 ~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  268 (346)
T d2ajaa1         190 AMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV  268 (346)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCS
T ss_pred             cccccCCCcchhhHHhhcCHHHHHHHHHhC-CCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHH
Confidence            1 1224466778888888899999998876 55544322       2233455555444444433333322211  1222


Q ss_pred             cCC-------CCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCC-----CCCCCCCC
Q psy2733         272 DID-------GNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAP-----LSLENNNR  339 (644)
Q Consensus       272 d~~-------G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gad-----i~~~n~~G  339 (644)
                      +..       +.++|+.|+..+.                               ++++++|++.|+.     .+..+.+|
T Consensus       269 ~~~~~~~~~~~~~~l~~a~~~~~-------------------------------ld~v~~Ll~~~~~~~~~~~~~~~~~g  317 (346)
T d2ajaa1         269 TKSECLQGFYMLRNLIRRNDEVL-------------------------------LDDIRFLLSIPGIKALAPTATIPGDA  317 (346)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCGGG-------------------------------HHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred             hcccccccchhhhHHHHHhcCCh-------------------------------HHHHHHHHhCcChhhhcccccCCCCC
Confidence            211       2344444444333                               7899999988753     45566789


Q ss_pred             CCcchhhhcCC--cHHHHHHH
Q psy2733         340 QKPLDLILEDT--SLLNEIME  358 (644)
Q Consensus       340 ~TpL~~A~~~~--~~~~~l~~  358 (644)
                      +||||+|++.+  ++++.|+.
T Consensus       318 ~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         318 NELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             CHHHHHHHHHTCTTHHHHHTT
T ss_pred             CcHHHHHHHcCcHHHHHHHhC
Confidence            99999999654  44555553

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.2e-23  Score=181.10  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=103.0

Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCc
Q psy2733         209 FTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNF  288 (644)
Q Consensus       209 ~T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~  288 (644)
                      .|||++|++.|+.++|++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++ 
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~-   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH-   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC-
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCc-
Confidence            4899999999999999999998 89999999999999999999999999999999999999999999999999999998 


Q ss_pred             ccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCCCCCCcchhhh
Q psy2733         289 YKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLIL  347 (644)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~~G~TpL~~A~  347 (644)
                                                    .+++++|+++|+|++.+|.+|+||||+|.
T Consensus        81 ------------------------------~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 ------------------------------VSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             ------------------------------CHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ------------------------------hhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence                                          56999999999999999999999999996

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.2e-23  Score=209.61  Aligned_cols=187  Identities=19%  Similarity=0.133  Sum_probs=122.8

Q ss_pred             HHHHHHHCCCCCccc-CCCCCcHHHHHHhcCCHHHHHHH-hhccCCCccchhhhhhhhhccccccccCCCCCCCCCCCCc
Q psy2733          15 ELNILLARGACVYYP-DDAGDTALHYAAFGNKPDAIQIN-SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETP   92 (644)
Q Consensus        15 ~vk~LL~~Ga~~n~~-d~~G~TpLh~Aa~~g~~eiv~lL-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (644)
                      +...+...+.++|.. |.+|+||||+|+..|+.++|++| .+|++++.                                
T Consensus        88 ~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~--------------------------------  135 (301)
T d1sw6a_          88 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY--------------------------------  135 (301)
T ss_dssp             HHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB--------------------------------
T ss_pred             HHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc--------------------------------
Confidence            333333456777765 88888888888888888888888 88888888                                


Q ss_pred             ccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC------C-HHHHHHHhcCCCCC
Q psy2733          93 MLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKG------F-EEIQLLLLSHPEVN  165 (644)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g------~-~~iv~~Ll~~~~~~  165 (644)
                                                                +|..|+||||.|+..+      . .++++++..    .
T Consensus       136 ------------------------------------------~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~  169 (301)
T d1sw6a_         136 ------------------------------------------GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----C  169 (301)
T ss_dssp             ------------------------------------------CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----G
T ss_pred             ------------------------------------------CCcccccHHHHhhhcccchhhhhHHHHHHHHhh----h
Confidence                                                      4556777777777532      3 345555543    3


Q ss_pred             ccccCCCCCcHHHHHHHcCC----H--------HHHHHHHHhcCCccCCcCCCCCchHHHHHHhcCcHHHHH-----HHH
Q psy2733         166 LYLENSKGFNILNYAVLRGN----M--------KVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE-----LLV  228 (644)
Q Consensus       166 ~~~~d~~g~tpL~~A~~~g~----~--------~~v~~Ll~~~~~~~~~~~d~~g~T~Lh~A~~~g~~~~v~-----~Ll  228 (644)
                      +...|..|+||||+++..+.    .        .++..++..+....... ...+.++++.+........+.     .++
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG-TNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCSHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcc-cccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            55667778888887775443    1        23344555554433322 245556666655444433332     233


Q ss_pred             HhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHH
Q psy2733         229 EKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLF  283 (644)
Q Consensus       229 ~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~  283 (644)
                      .   ..+|.+|.+|+||||+|++.|+.++|++|+++|+|++.+|..|+|||++|+
T Consensus       249 ~---~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         249 A---NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             H---HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             h---cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            2   247899999999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-22  Score=179.54  Aligned_cols=119  Identities=25%  Similarity=0.314  Sum_probs=109.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccC
Q psy2733           1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQR   80 (644)
Q Consensus         1 ~TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (644)
                      .++||+||..|++++|++|+++|++++.+|.+|.||||+|+ .|+.+++++                             
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~-----------------------------   53 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAEL-----------------------------   53 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHH-----------------------------
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccc-----------------------------
Confidence            37899999999999999999999999999999999999775 689999987                             


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHh
Q psy2733          81 PSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQD-TPMHDAVAKGFEEIQLLLL  159 (644)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~-TpL~~A~~~g~~~iv~~Ll  159 (644)
                                                                  |+++|+++|.++..|. ||||+|++.|+.+++++|+
T Consensus        54 --------------------------------------------Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll   89 (125)
T d1bi7b_          54 --------------------------------------------LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH   89 (125)
T ss_dssp             --------------------------------------------HHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             --------------------------------------------cccccccccccccccccccccccccccccccccccc
Confidence                                                        7788888888887765 6999999999999999999


Q ss_pred             cCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q psy2733         160 SHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILA  194 (644)
Q Consensus       160 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  194 (644)
                      + .|++++.+|..|.||||+|+.+|+.+++++|++
T Consensus        90 ~-~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          90 R-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             H-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             c-cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9 799999999999999999999999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.9e-23  Score=181.37  Aligned_cols=106  Identities=25%  Similarity=0.343  Sum_probs=101.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      |||++|++.|++++|++|+++|++++.+|..|+||||+|+..|+.+++++                              
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~------------------------------   53 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF------------------------------   53 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHH------------------------------
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccc------------------------------
Confidence            89999999999999999999999999999999999999999999999887                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |+++|+++|.+|..|+||||+|+..|+.+++++|++ 
T Consensus        54 -------------------------------------------ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~-   89 (118)
T d1myoa_          54 -------------------------------------------LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS-   89 (118)
T ss_dssp             -------------------------------------------HHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHT-
T ss_pred             -------------------------------------------cccccceeeecccccccchhhhhhcCchhhhhhhhc-
Confidence                                                       788899999999999999999999999999999999 


Q ss_pred             CCCCccccCCCCCcHHHHHH
Q psy2733         162 PEVNLYLENSKGFNILNYAV  181 (644)
Q Consensus       162 ~~~~~~~~d~~g~tpL~~A~  181 (644)
                      .|++++.+|..|.||||+|.
T Consensus        90 ~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          90 KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCCSSSSSSSTCCCCCTCS
T ss_pred             ccccceeeCCCCCCHHHHHh
Confidence            79999999999999999883

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-21  Score=173.76  Aligned_cols=121  Identities=19%  Similarity=0.252  Sum_probs=107.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHhhccCCCccchhhhhhhhhccccccccCC
Q psy2733           2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYKERHRTVTTEKVQRP   81 (644)
Q Consensus         2 TpLh~Aa~~G~~e~vk~LL~~Ga~~n~~d~~G~TpLh~Aa~~g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   81 (644)
                      |+||.||..|+.++|++|+++|+++|.+|.+|+||||+|+..|+.+++++                              
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~------------------------------   52 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF------------------------------   52 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHH------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccc------------------------------
Confidence            68999999999999999999999999999999999999999999999987                              


Q ss_pred             CCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHhcC
Q psy2733          82 SNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH  161 (644)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  161 (644)
                                                                 |+++|+++|.+|.+|+||||+|+..|+.+++++|++ 
T Consensus        53 -------------------------------------------ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-   88 (130)
T d1ycsb1          53 -------------------------------------------LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE-   88 (130)
T ss_dssp             -------------------------------------------HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             -------------------------------------------ccccccccccccccCcccccccchhhHHHHHHHHHH-
Confidence                                                       777888888899999999999999999999999999 


Q ss_pred             CCCCccccCC-CCCcHHHHH--HHcCCHHHHHHHHHhc
Q psy2733         162 PEVNLYLENS-KGFNILNYA--VLRGNMKVTEKILALN  196 (644)
Q Consensus       162 ~~~~~~~~d~-~g~tpL~~A--~~~g~~~~v~~Ll~~~  196 (644)
                      .|++++..+. .+.||++++  ...|+.+++++|+...
T Consensus        89 ~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          89 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            7999987764 577876655  5678888888888654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.1e-21  Score=168.69  Aligned_cols=120  Identities=22%  Similarity=0.207  Sum_probs=105.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccCCcCCCC-CchHHHHHHh
Q psy2733         139 QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD-GFTPLHVACF  217 (644)
Q Consensus       139 G~TpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~T~Lh~A~~  217 (644)
                      +.++||+|+..|+.+++++|++ .|++++..+..|.||||+|+ .|+.+++++|++.++++...  +.. +.||||+|++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~--~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA--DPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC--CTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHH-cCCccccccccccccccccc-cccccccccccccccccccc--cccccccccccccc
Confidence            5689999999999999999999 78999999999999998775 68999999999998887653  344 4579999999


Q ss_pred             cCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2733         218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML  263 (644)
Q Consensus       218 ~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~  263 (644)
                      .|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999998 89999999999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.9e-20  Score=164.95  Aligned_cols=106  Identities=23%  Similarity=0.248  Sum_probs=77.2

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcc
Q psy2733         210 TPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFY  289 (644)
Q Consensus       210 T~Lh~A~~~g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~Aa~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~  289 (644)
                      ++|+.|+..|+.++|++|+++ |+++|.+|.+|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..++  
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~--   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN--   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC--
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhH--
Confidence            567777777777777777776 67777777777777777777777777777777777777777777777777777776  


Q ss_pred             cccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcCCCCCCCCC-CCCCcchhhh
Q psy2733         290 KTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENN-NRQKPLDLIL  347 (644)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~Gadi~~~n~-~G~TpL~~A~  347 (644)
                                                   ++++++|+++|++++.++. +|+||++++.
T Consensus        80 -----------------------------~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~  109 (130)
T d1ycsb1          80 -----------------------------VQVCKFLVESGAAVFAMTYSDMQTAADKCE  109 (130)
T ss_dssp             -----------------------------HHHHHHHHHTTCCTTCCCSSSCCCHHHHCC
T ss_pred             -----------------------------HHHHHHHHHcCCCcccccCCCCCCHHHHHH
Confidence                                         5677777777777776653 4677766654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.2e-19  Score=163.84  Aligned_cols=125  Identities=19%  Similarity=0.137  Sum_probs=111.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCccc------CCCCCcHHHHHHhc---CCHHHHHHHhhccCCCccchhhhhhhhhcc
Q psy2733           3 LLHILAYQGCVEELNILLARGACVYYP------DDAGDTALHYAAFG---NKPDAIQINSHVSGANRSRKHIYKERHRTV   73 (644)
Q Consensus         3 pLh~Aa~~G~~e~vk~LL~~Ga~~n~~------d~~G~TpLh~Aa~~---g~~eiv~lL~~~a~~~~~~~~~~~~~~~~~   73 (644)
                      .|+.|++.+++..+..++..|++++..      +..|+||||+|++.   ++.++|++                      
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~----------------------   66 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF----------------------   66 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHH----------------------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHH----------------------
Confidence            467899999999999999999987765      67899999999975   56677765                      


Q ss_pred             ccccccCCCCCCCCCCCCcccccccccccccCCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q psy2733          74 TTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEE  153 (644)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~v~~Ll~~gad~n~~d~~G~TpL~~A~~~g~~~  153 (644)
                                                                         |+++|+++|.+|.+|+||||+|+..|+.+
T Consensus        67 ---------------------------------------------------Ll~~gadin~~d~~g~TpLh~A~~~~~~~   95 (154)
T d1dcqa1          67 ---------------------------------------------------LVQNSGNLDKQTGKGSTALHYCCLTDNAE   95 (154)
T ss_dssp             ---------------------------------------------------HHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             ---------------------------------------------------HHHcCCChhhhhhhhcccccccccccccc
Confidence                                                               78888999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCccC
Q psy2733         154 IQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLAT  201 (644)
Q Consensus       154 iv~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  201 (644)
                      ++++|++ .|++++.+|..|.||||+|+..|+.+++++|++.++....
T Consensus        96 ~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          96 CLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             ccccccc-cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            9999999 7999999999999999999999999999999998776544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=8.5e-19  Score=159.93  Aligned_cols=124  Identities=19%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCccCC----cCCCCCchHHHHHHhc---CcHHHHHHHHHhcCCCcccCCCCCCCHHHHH
Q psy2733         177 LNYAVLRGNMKVTEKILALNRNLATV----PKTSDGFTPLHVACFN---DHIEIVELLVEKYKVNINALDLKKRTPLMAA  249 (644)
Q Consensus       177 L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~d~~g~T~Lh~A~~~---g~~~~v~~Ll~~~g~~in~~d~~G~TpL~~A  249 (644)
                      |..|++.++...+..++..+.+....    ..+..|+||||+|++.   +..+++++|++. |+++|.+|..|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhccccccc
Confidence            44566666666666666665543221    1246788999999974   678999999988 899999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCcccCCCCcHHHHHHHcCCcccccccccCCchhHHhhhhcCCCCCccchHHHHHHHHHHcC
Q psy2733         250 VGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHG  329 (644)
Q Consensus       250 a~~g~~~iv~~Ll~~gadvn~~d~~G~T~Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~G  329 (644)
                      +..|+.+++++|+++|++++.+|.+|+||||+|+..++                               .+++++|++.+
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~-------------------------------~~i~~~L~~~~  137 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH-------------------------------EHCEELLTQAL  137 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-------------------------------HHHHHHHHHHH
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCC-------------------------------HHHHHHHHHhC
Confidence            99999999999999999999999999999999999988                               67999999987


Q ss_pred             CCC
Q psy2733         330 APL  332 (644)
Q Consensus       330 adi  332 (644)
                      +..
T Consensus       138 ~~~  140 (154)
T d1dcqa1         138 SGR  140 (154)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            643

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=8.4e-09  Score=80.99  Aligned_cols=43  Identities=30%  Similarity=0.658  Sum_probs=37.9

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccceE
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~~~  521 (644)
                      ..|.||++...+++++ |||.+|..|...     .+.||+||..|.+.-
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            4699999999999999 999999999863     357999999998654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6e-09  Score=75.66  Aligned_cols=41  Identities=22%  Similarity=0.549  Sum_probs=37.3

Q ss_pred             CcccccccCCcCeEEe-cCcccchhhhhcC-CCCccccccccc
Q psy2733         479 NTCTICMERCRNTIFL-CGHGTCDVCAKTL-KFCHMCRKLIEQ  519 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-CgH~~C~~C~~~~-~~Cp~Cr~~i~~  519 (644)
                      ..|+||++...+.+.+ |||.||..|..+. .+||+||+++..
T Consensus         7 l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             SSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CCCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCcccC
Confidence            5899999999999999 9999999998865 589999999874

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=2e-08  Score=79.65  Aligned_cols=46  Identities=22%  Similarity=0.494  Sum_probs=39.5

Q ss_pred             hhhhcCcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccc
Q psy2733         474 EIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQ  519 (644)
Q Consensus       474 ~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~  519 (644)
                      ++.++..|+||++...+.+.+ |||.||..|...     -.+||+||.++..
T Consensus        19 d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             hhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            445567899999999999999 999999999983     2579999998864

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.4e-08  Score=81.92  Aligned_cols=53  Identities=23%  Similarity=0.621  Sum_probs=43.2

Q ss_pred             HHHHHhhhhhhhcCcccccccCCcCeEEe-cCcccchhhhhc-------CCCCcccccccc
Q psy2733         466 NYLESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-------LKFCHMCRKLIE  518 (644)
Q Consensus       466 ~~l~~~~~~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-------~~~Cp~Cr~~i~  518 (644)
                      +..++.++.+++...|+||++...+.+.+ |||.||..|...       ...||+||.++.
T Consensus         9 ~~~~~~~~~l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_           9 EEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             HHHHHHHHhcccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            34455566667777899999999999999 999999999863       137999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.38  E-value=9.5e-08  Score=72.55  Aligned_cols=43  Identities=33%  Similarity=0.744  Sum_probs=35.5

Q ss_pred             CcccccccCCcCeEE-e-cCcccchhhhhc----CCCCccccccccceE
Q psy2733         479 NTCTICMERCRNTIF-L-CGHGTCDVCAKT----LKFCHMCRKLIEQRI  521 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~-~-CgH~~C~~C~~~----~~~Cp~Cr~~i~~~~  521 (644)
                      ..|+||++...+.+. . |||.||..|..+    -..||+||.+|....
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~~~   54 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHhhc
Confidence            459999999877544 5 999999999984    368999999998544

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.8e-08  Score=78.10  Aligned_cols=47  Identities=21%  Similarity=0.513  Sum_probs=38.6

Q ss_pred             hhhhhhcCcccccccCCcCeEE-e-cCcccchhhhhcC--CCCcccccccc
Q psy2733         472 ISEIEEMNTCTICMERCRNTIF-L-CGHGTCDVCAKTL--KFCHMCRKLIE  518 (644)
Q Consensus       472 ~~~~~~~~~C~iC~~~~~~~~~-~-CgH~~C~~C~~~~--~~Cp~Cr~~i~  518 (644)
                      ++.+++...|+||++...+.+. . |||.||..|+.+.  .+||.||.++.
T Consensus        16 l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~   66 (97)
T d1jm7b_          16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW   66 (97)
T ss_dssp             HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred             HHhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCc
Confidence            3445556789999999999875 5 9999999998864  47999998875

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.4e-07  Score=70.76  Aligned_cols=44  Identities=20%  Similarity=0.560  Sum_probs=33.4

Q ss_pred             hcCcccccccCC-----cCeEEe-cCcccchhhhhc-----CCCCccccccccce
Q psy2733         477 EMNTCTICMERC-----RNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQR  520 (644)
Q Consensus       477 ~~~~C~iC~~~~-----~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~~  520 (644)
                      ++..|+||++..     ..++.. |||.+|..|...     ...||+||+++...
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            346899999752     234556 999999999973     24799999999763

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.22  E-value=2.5e-07  Score=66.74  Aligned_cols=44  Identities=23%  Similarity=0.722  Sum_probs=34.7

Q ss_pred             hhhcCcccccccCCcC---e-EEe-cCcccchhhhhcC----CCCcccccccc
Q psy2733         475 IEEMNTCTICMERCRN---T-IFL-CGHGTCDVCAKTL----KFCHMCRKLIE  518 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~---~-~~~-CgH~~C~~C~~~~----~~Cp~Cr~~i~  518 (644)
                      +++...|+||++....   + .+. |||.||..|+.+.    ..||+||.+|.
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4566789999988753   3 345 9999999999953    58999999873

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=4.8e-07  Score=65.56  Aligned_cols=41  Identities=7%  Similarity=-0.033  Sum_probs=36.3

Q ss_pred             cccccccCCcCeEEe--cCcccchhhhhc----CCCCccccccccce
Q psy2733         480 TCTICMERCRNTIFL--CGHGTCDVCAKT----LKFCHMCRKLIEQR  520 (644)
Q Consensus       480 ~C~iC~~~~~~~~~~--CgH~~C~~C~~~----~~~Cp~Cr~~i~~~  520 (644)
                      .|+||++...+.|..  |||.||..|+.+    -.+||+||++++..
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            699999999999876  999999999884    36899999998864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=1.1e-06  Score=68.92  Aligned_cols=46  Identities=17%  Similarity=0.122  Sum_probs=39.5

Q ss_pred             hhhhcCcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccc
Q psy2733         474 EIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQ  519 (644)
Q Consensus       474 ~~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~  519 (644)
                      ++-++..|+||++-..+.|.+ |||.+|..|...     -..||+||.+++.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            345678999999999999999 999999999874     2479999998864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=7.9e-07  Score=63.30  Aligned_cols=40  Identities=33%  Similarity=0.782  Sum_probs=30.8

Q ss_pred             cccccccCCc----CeEEe-cCcccchhhhhcC-----CCCccccccccc
Q psy2733         480 TCTICMERCR----NTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQ  519 (644)
Q Consensus       480 ~C~iC~~~~~----~~~~~-CgH~~C~~C~~~~-----~~Cp~Cr~~i~~  519 (644)
                      .|+||++...    .+... |||.+|..|..+.     .+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            5999998652    23445 9999999998842     369999999863

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=2.2e-06  Score=66.69  Aligned_cols=46  Identities=15%  Similarity=0.303  Sum_probs=39.5

Q ss_pred             hhhcCcccccccCCcCeEEe-cCcccchhhhhc-----CCCCccccccccce
Q psy2733         475 IEEMNTCTICMERCRNTIFL-CGHGTCDVCAKT-----LKFCHMCRKLIEQR  520 (644)
Q Consensus       475 ~~~~~~C~iC~~~~~~~~~~-CgH~~C~~C~~~-----~~~Cp~Cr~~i~~~  520 (644)
                      +.++..|+||++...+.|.+ |||.||..|...     -..||.||.++...
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            45678999999999999999 999999999873     24699999998753

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=9.3e-07  Score=74.46  Aligned_cols=55  Identities=18%  Similarity=0.456  Sum_probs=37.0

Q ss_pred             HHHHHHHhhhhhhhcCcccccccCCc------------------CeEEe-cCcccchhhhhcC---------CCCccccc
Q psy2733         464 RVNYLESKISEIEEMNTCTICMERCR------------------NTIFL-CGHGTCDVCAKTL---------KFCHMCRK  515 (644)
Q Consensus       464 ~~~~l~~~~~~~~~~~~C~iC~~~~~------------------~~~~~-CgH~~C~~C~~~~---------~~Cp~Cr~  515 (644)
                      .++++.+++... .+..|.||++...                  .+.++ |||.||..|....         .+||+||.
T Consensus        12 v~~~~~e~~~~~-~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~   90 (114)
T d1v87a_          12 VIRKYTEELKVA-PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT   90 (114)
T ss_dssp             HHHHHEEECSSC-CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred             HHHHHHHHhccc-ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccc
Confidence            344444444333 2357999998753                  24556 9999999998732         26999998


Q ss_pred             cccc
Q psy2733         516 LIEQ  519 (644)
Q Consensus       516 ~i~~  519 (644)
                      .+..
T Consensus        91 ~~~~   94 (114)
T d1v87a_          91 IYGE   94 (114)
T ss_dssp             BSSS
T ss_pred             hhcc
Confidence            7753

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=9.3e-05  Score=58.53  Aligned_cols=28  Identities=18%  Similarity=0.344  Sum_probs=23.4

Q ss_pred             eEEe-cCcccchhhhhc----CCCCcccccccc
Q psy2733         491 TIFL-CGHGTCDVCAKT----LKFCHMCRKLIE  518 (644)
Q Consensus       491 ~~~~-CgH~~C~~C~~~----~~~Cp~Cr~~i~  518 (644)
                      ++.. |||.|+..|..+    -..||+||++..
T Consensus        52 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            5566 999999999984    368999999875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=6.6e-05  Score=60.67  Aligned_cols=47  Identities=6%  Similarity=-0.085  Sum_probs=39.7

Q ss_pred             hhhhhcCcccccccCCcCeEEe-cCc-ccchhhhhc----CCCCccccccccc
Q psy2733         473 SEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKT----LKFCHMCRKLIEQ  519 (644)
Q Consensus       473 ~~~~~~~~C~iC~~~~~~~~~~-CgH-~~C~~C~~~----~~~Cp~Cr~~i~~  519 (644)
                      .++-++..|+||.+...+.|.+ ||| .||..|+.+    -..||+||.++..
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            4455679999999999999999 776 899999996    2589999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=97.08  E-value=0.00014  Score=54.40  Aligned_cols=46  Identities=33%  Similarity=0.650  Sum_probs=36.7

Q ss_pred             ccccccccccccceEEecCCCccccchhhHHHh----hhhhccccceeeee
Q psy2733         398 PVECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEMRV  444 (644)
Q Consensus       398 ~~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~~~  444 (644)
                      ..+|.||++.....+...||||. .|..|..+-    +.||.||..|....
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~i~~~~   54 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred             CCCCccCCcCccCCcEEeCCCCc-CcHHHHHHHHHhCCcCCCCCcchHhhc
Confidence            35799999976455677799996 799999664    48999999987644

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.01  E-value=0.0001  Score=53.66  Aligned_cols=44  Identities=27%  Similarity=0.568  Sum_probs=33.8

Q ss_pred             hhcCcccccccCCcCeEEe-c-----Ccccchhhhhc------CCCCccccccccc
Q psy2733         476 EEMNTCTICMERCRNTIFL-C-----GHGTCDVCAKT------LKFCHMCRKLIEQ  519 (644)
Q Consensus       476 ~~~~~C~iC~~~~~~~~~~-C-----gH~~C~~C~~~------~~~Cp~Cr~~i~~  519 (644)
                      ++...|.||++...+.... |     +|.++..|...      -..||+||+++..
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            4557899999876665544 4     49999999984      2479999998763

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00028  Score=54.39  Aligned_cols=43  Identities=28%  Similarity=0.752  Sum_probs=35.1

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceeeee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEMRV  444 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~~~  444 (644)
                      .|.||.+.. ......||||. .|.+|..+.     +.||+||..|...-
T Consensus        25 ~C~IC~~~~-~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          25 LCKICAEND-KDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             BCTTTSSSB-CCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCccCCCcC-CCeEEeCCCCe-eeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            599999987 66677799997 699998653     36999999997643

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=6.9e-05  Score=53.61  Aligned_cols=41  Identities=24%  Similarity=0.630  Sum_probs=33.1

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh-hhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK-KCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~-~Cp~Cr~~i~~  442 (644)
                      +|.||.+.. ......||||. .|..|..+.+ +||.||+.+..
T Consensus         8 ~C~IC~~~~-~~p~~lpCgH~-fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           8 RCQQCQAEA-KCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             SCSSSCSSC-BCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CCcccCccc-CCCEEecCCCH-HhHHHHHcCCCcCcCCCCcccC
Confidence            699999986 55556699995 7999986653 89999988854

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0017  Score=47.72  Aligned_cols=42  Identities=24%  Similarity=0.661  Sum_probs=31.5

Q ss_pred             cccccccc----ccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         400 ECAVCSEL----GVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~----~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      .|.||++.    ....+...||||. .|.+|..+.     ..||.||+.+.+
T Consensus         5 ~CpIC~~~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           5 GCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCcCCceeecCCceEEEeCccChH-hhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            59999874    2123455699996 699999765     269999998855

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0012  Score=46.24  Aligned_cols=42  Identities=26%  Similarity=0.559  Sum_probs=30.6

Q ss_pred             cccccccccc---ceEEecCCCccccchhhHHHhh-----hhhccccceee
Q psy2733         400 ECAVCSELGV---ANVLLKPCNHAVACEECSSRMK-----KCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~---~~v~~~PC~h~~~C~~C~~~~~-----~Cp~Cr~~i~~  442 (644)
                      +|.||++...   ..+...||||. .|..|..+..     +||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~-~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCC-CCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCc-cchHHHHHHHhhcCCCCCccCCcCCC
Confidence            6999987421   22334489997 5999997752     69999988753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0017  Score=51.67  Aligned_cols=39  Identities=21%  Similarity=0.441  Sum_probs=28.6

Q ss_pred             cCcccccccCCc--C-eEEe-cCcccchhhhhc----------C--CCCcccccc
Q psy2733         478 MNTCTICMERCR--N-TIFL-CGHGTCDVCAKT----------L--KFCHMCRKL  516 (644)
Q Consensus       478 ~~~C~iC~~~~~--~-~~~~-CgH~~C~~C~~~----------~--~~Cp~Cr~~  516 (644)
                      ...|.||++...  + +.+. |||.+|..|...          .  -+||.|+-+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            357999999864  3 4566 999999999762          1  269986543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0022  Score=49.86  Aligned_cols=41  Identities=24%  Similarity=0.565  Sum_probs=32.6

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      .|.||.+.. ......||||. .|..|..+.     ++||.||.++..
T Consensus        25 ~C~IC~~~~-~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          25 SCQICEHIL-ADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             BCTTTCSBC-SSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCccCCcch-hcceecCCCCh-hhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            499999987 44455699999 799999763     379999988753

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0024  Score=51.07  Aligned_cols=41  Identities=29%  Similarity=0.596  Sum_probs=32.4

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHhh--hhhcccccee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRMK--KCIMCKTFIE  441 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~~--~Cp~Cr~~i~  441 (644)
                      .|.||.+....-+.+.||||. .|..|..+..  +||.||..+.
T Consensus        24 ~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~   66 (97)
T d1jm7b_          24 RCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW   66 (97)
T ss_dssp             SCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred             CCccCCchhhcCceeCCCCCc-hhHHHHHHHHhccccccCCcCc
Confidence            599999986454555699997 6999987653  7999998764

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0047  Score=49.83  Aligned_cols=40  Identities=33%  Similarity=0.786  Sum_probs=31.1

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh-------hhhhcccccee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-------KKCIMCKTFIE  441 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-------~~Cp~Cr~~i~  441 (644)
                      .|.||.+... .....||||. .|..|....       ..||.||..+.
T Consensus        23 ~CpIC~~~~~-~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          23 ECPICLELIK-EPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             SCSSSCCCCS-SCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCccCchhC-CeEEcCCCCc-hhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            4999999763 3344599996 799998663       27999998874

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=93.42  E-value=0.017  Score=40.42  Aligned_cols=41  Identities=32%  Similarity=0.637  Sum_probs=30.1

Q ss_pred             ccccccccccc--ceEE-ecCCCccccchhhHHHh----hhhhccccce
Q psy2733         399 VECAVCSELGV--ANVL-LKPCNHAVACEECSSRM----KKCIMCKTFI  440 (644)
Q Consensus       399 ~~C~iC~d~~~--~~v~-~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i  440 (644)
                      .+|.||++...  ..+. +.+|+|. .|.+|..+-    ..||+||..|
T Consensus         6 ~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           6 VECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCeEECccccCCCEEEEeCCCCCc-ccHHHHHHHHHhCCcCCCCCCEe
Confidence            46999998632  2333 4469996 799999773    3899999876

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.10  E-value=0.024  Score=46.34  Aligned_cols=44  Identities=30%  Similarity=0.491  Sum_probs=32.1

Q ss_pred             ccccccccccc-----------------ceEEecCCCccccchhhHHHhh---------hhhccccceeee
Q psy2733         399 VECAVCSELGV-----------------ANVLLKPCNHAVACEECSSRMK---------KCIMCKTFIEMR  443 (644)
Q Consensus       399 ~~C~iC~d~~~-----------------~~v~~~PC~h~~~C~~C~~~~~---------~Cp~Cr~~i~~~  443 (644)
                      ..|.||++...                 ..+...||+|. .|.+|.....         .||+||..+...
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~-FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCCh-hhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            45999987531                 23556699998 6999986632         599999877554

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.09  E-value=0.035  Score=42.08  Aligned_cols=41  Identities=7%  Similarity=-0.062  Sum_probs=31.6

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      .|.||.+.. ..-+..||||. .|..|....     ..||.|+..+..
T Consensus         9 ~CpIc~~l~-~dPv~~~cGht-fc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           9 CGKISFELM-REPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             BCTTTCSBC-SSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cCcCcCchh-hhhcccCCcCe-ecHHHHHHHHhcCCccCCCccccccc
Confidence            499999987 44445699995 799998664     269999988753

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.86  E-value=0.051  Score=38.02  Aligned_cols=42  Identities=10%  Similarity=0.068  Sum_probs=31.7

Q ss_pred             ccccccccccceEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         400 ECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      .|.||.+....-+....|||. .|.+|..+.    .+||+||+++..
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~-fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCccCCchHHhcCccCCCCCc-ccHHHHHHHHhhccCCCccCCcCCH
Confidence            389999987343444359998 699998554    589999998765

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.67  E-value=0.14  Score=38.38  Aligned_cols=42  Identities=14%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh-----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~-----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+....-| ..||||. .|..|..+.     ..||.|+..+..
T Consensus         9 l~CpIc~~~m~dPV-~~~cgh~-fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           9 FRCPISLELMKDPV-IVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSCTTTSCCCSSEE-EETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCCcCcCchhhCce-EccCCCc-chHHHHHHHHHHCCCCCCcccccCCc
Confidence            35999999874444 4599998 699999763     269999988754

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.30  E-value=0.13  Score=36.71  Aligned_cols=27  Identities=44%  Similarity=0.966  Sum_probs=25.1

Q ss_pred             CcccccccCCcCeEEe-c----Ccccchhhhh
Q psy2733         479 NTCTICMERCRNTIFL-C----GHGTCDVCAK  505 (644)
Q Consensus       479 ~~C~iC~~~~~~~~~~-C----gH~~C~~C~~  505 (644)
                      ..|.+|.++..+..|. |    +|.+|..|++
T Consensus         9 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr   40 (80)
T d2cs3a1           9 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSR   40 (80)
T ss_dssp             CCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred             eeeeeehhhhcCCceEeCCCCcCCceeccccH
Confidence            5799999999999999 9    5899999988

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.57  E-value=0.25  Score=38.70  Aligned_cols=43  Identities=12%  Similarity=0.108  Sum_probs=34.6

Q ss_pred             cccccccccccceEEecCCCccccchhhHHHh----hhhhccccceee
Q psy2733         399 VECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKTFIEM  442 (644)
Q Consensus       399 ~~C~iC~d~~~~~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~~  442 (644)
                      ..|.||.+.. ...+..||+|...|.+|..+.    ..||+|+.++..
T Consensus        23 f~CPI~~~lm-~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          23 FLDPIMSTLM-CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TBCTTTCSBC-SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             hCCcCchhHH-HHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            4599999987 555666999888999999885    489999988743

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.69  E-value=0.4  Score=36.58  Aligned_cols=30  Identities=33%  Similarity=0.424  Sum_probs=23.7

Q ss_pred             eEEecCCCccccchhhHHHh----hhhhcccccee
Q psy2733         411 NVLLKPCNHAVACEECSSRM----KKCIMCKTFIE  441 (644)
Q Consensus       411 ~v~~~PC~h~~~C~~C~~~~----~~Cp~Cr~~i~  441 (644)
                      .+...||||. .+..|..+=    ..||+||.+..
T Consensus        51 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          51 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CeEEccccCc-ccHHHHHHHHHHCCcCCCCCCccc
Confidence            3566699998 699999663    48999998754

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=80.93  E-value=0.31  Score=34.22  Aligned_cols=40  Identities=23%  Similarity=0.562  Sum_probs=28.7

Q ss_pred             ccccccccccceEEecCCC-----ccccchhhHHHh------hhhhcccccee
Q psy2733         400 ECAVCSELGVANVLLKPCN-----HAVACEECSSRM------KKCIMCKTFIE  441 (644)
Q Consensus       400 ~C~iC~d~~~~~v~~~PC~-----h~~~C~~C~~~~------~~Cp~Cr~~i~  441 (644)
                      .|.||++.. ......||+     |. ++..|..+-      ..||+||+...
T Consensus         8 ~C~IC~~~~-~~~~~~~c~c~~c~h~-~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           8 VCWICNEEL-GNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             EETTTTEEC-SCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCccCCccC-CCceeEecccCCCCCE-EcHHHHHHHHhhCCCCCCcccCCeee
Confidence            499999864 334445665     66 699999763      26999998764