Psyllid ID: psy2749

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MGLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGRE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEEEEEEEEcEEEEEEEccHHHHHHHHHHcccccccccccEEEEcEEEccccEEEEEEEcccEEEEccccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHcccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcEEEEEEEEEEcccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccHHHHcHccEEEEEEEEEEEEEEEcHHHHHHHcccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MGLTHAKAKEVLerdgpnaltrglTHAKAKEVlerdgpnaltppkqtpeWIKFCKQLFGGFALLLWIGAILCFIAYTIqastveepaddnltvcditccwLFRHAISLVKARAVLntskkgklYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKnmvpqvspgre
Flexible Loop (DISEMBL)
mglthakakevlerdgpnaltrgLTHAKakevlerdgpnaltppkqtPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESfknmvpqvspgre
Low Complexity Region (SEG)
MGLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGRE
Disordered region (IsUnstruct)
************************************************EWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQ***********************
Disordered Region (DISOPRED)
**LTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENK***IMESFKNMVPQV*****
Disordered Region (DISEMBL)
MGLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGRE
Disordered Region (DISPRO)
*****AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
P13607	1041	Sodium/potassium-transpor	no	N/A	0.493	0.102	0.683	1e-48
Q5RDR3	1023	Sodium/potassium-transpor	yes	N/A	0.571	0.121	0.557	2e-43
P05023	1023	Sodium/potassium-transpor	yes	N/A	0.571	0.121	0.557	2e-43
Q92030	1022	Sodium/potassium-transpor	N/A	N/A	0.571	0.121	0.557	2e-43
Q9YH26	1023	Sodium/potassium-transpor	N/A	N/A	0.571	0.121	0.557	4e-43
P18907	1021	Sodium/potassium-transpor	yes	N/A	0.571	0.121	0.551	4e-43
P50997	1021	Sodium/potassium-transpor	yes	N/A	0.571	0.121	0.551	6e-43
P05024	1021	Sodium/potassium-transpor	yes	N/A	0.571	0.121	0.551	9e-43
Q08DA1	1021	Sodium/potassium-transpor	yes	N/A	0.571	0.121	0.544	1e-42
P04074	1021	Sodium/potassium-transpor	N/A	N/A	0.571	0.121	0.544	2e-42

>sp|P13607|ATNA_DROME Sodium/potassium-transporting ATPase subunit alpha OS=Drosophila melanogaster GN=Atpalpha PE=1 SV=3

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 103/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFA+LLWIGAILCF+AY+IQAST
Sbjct: 80  GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFAMLLWIGAILCFVAYSIQAST 139

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
            EEPADDN                                LYLGIVL+AVVIVTGIFSYY
Sbjct: 140 SEEPADDN--------------------------------LYLGIVLSAVVIVTGIFSYY 167

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 168 QESKSSKIMESFKNMVPQF 186

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 9

>sp|Q5RDR3|AT1A1_PONAB Sodium/potassium-transporting ATPase subunit alpha-1 OS=Pongo abelii GN=ATP1A1 PE=2 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 105/156 (67%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEWIKFC+QLFGGF++L
Sbjct: 44  HKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFCRQLFGGFSML 103

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY+IQA+T EEP +DN                                LY
Sbjct: 104 LWIGAILCFLAYSIQAATEEEPQNDN--------------------------------LY 131

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 132 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 167

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P05023|AT1A1_HUMAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens GN=ATP1A1 PE=1 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 105/156 (67%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEWIKFC+QLFGGF++L
Sbjct: 44  HKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFCRQLFGGFSML 103

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY+IQA+T EEP +DN                                LY
Sbjct: 104 LWIGAILCFLAYSIQAATEEEPQNDN--------------------------------LY 131

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 132 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 167

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q92030|AT1A1_ANGAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Anguilla anguilla GN=atp1a1 PE=2 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 104/156 (66%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H    + L R     LTRGLT ++A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 43  HKLTLDELHRKYGTDLTRGLTSSRAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 102

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQA++ +EPA+DN                                LY
Sbjct: 103 LWIGAILCFLAYGIQAASEDEPANDN--------------------------------LY 130

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IMDSFKNLVPQ
Sbjct: 131 LGVVLSAVVIITGCFSYYQEAKSSRIMDSFKNLVPQ 166

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Anguilla anguilla (taxid: 7936)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q9YH26|AT1A1_OREMO Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oreochromis mossambicus GN=atp1a1 PE=2 SV=2

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 105/156 (67%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H    + L R     LTRGL+ ++AKE+L RDGPNALTPP  TPEW+KFCKQLFGGF++L
Sbjct: 44  HKLTLDELHRKYGTDLTRGLSSSRAKEILARDGPNALTPPPTTPEWVKFCKQLFGGFSML 103

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQA++ +EPA+DN                                LY
Sbjct: 104 LWIGAILCFLAYGIQAASEDEPANDN--------------------------------LY 131

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LGIVL+AVVI+TG FSYYQE+KSS IM+SFKNLVP+
Sbjct: 132 LGIVLSAVVIITGCFSYYQEAKSSKIMESFKNLVPR 167

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Oreochromis mossambicus (taxid: 8127)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P18907|AT1A1_HORSE Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 105/156 (67%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L+R     L+RGLT A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 42  HKLSLDELQRKYGTDLSRGLTTARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 101

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQA+T EEP +DN                                LY
Sbjct: 102 LWIGAILCFLAYGIQAATEEEPQNDN--------------------------------LY 129

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 130 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 165

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Equus caballus (taxid: 9796)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P50997|AT1A1_CANFA Sodium/potassium-transporting ATPase subunit alpha-1 OS=Canis familiaris GN=ATP1A1 PE=2 SV=1

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 104/156 (66%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 42  HKLSLDELHRKYGTDLSRGLTTARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 101

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQA+T EEP +DN                                LY
Sbjct: 102 LWIGAILCFLAYGIQAATEEEPQNDN--------------------------------LY 129

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 130 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 165

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P05024|AT1A1_PIG Sodium/potassium-transporting ATPase subunit alpha-1 OS=Sus scrofa GN=ATP1A1 PE=1 SV=1

 Score =  173 bits (438), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 104/156 (66%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 42  HKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 101

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQA+T EEP +DN                                LY
Sbjct: 102 LWIGAILCFLAYGIQAATEEEPQNDN--------------------------------LY 129

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 130 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 165

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q08DA1|AT1A1_BOVIN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Bos taurus GN=ATP1A1 PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 104/156 (66%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 42  HKLSLDELHRKYGTDLSRGLTTARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 101

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGA+LCF+AY IQA+T EEP +DN                                LY
Sbjct: 102 LWIGAVLCFLAYGIQAATEEEPQNDN--------------------------------LY 129

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 130 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 165

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P04074|AT1A1_SHEEP Sodium/potassium-transporting ATPase subunit alpha-1 OS=Ovis aries GN=ATP1A1 PE=1 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 103/156 (66%), Gaps = 32/156 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L RGLT A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 42  HKLSLDELHRKYGTDLNRGLTTARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 101

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGA+LCF+AY IQA+T EEP +DN                                LY
Sbjct: 102 LWIGAVLCFLAYGIQAATEEEPQNDN--------------------------------LY 129

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 130 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 165

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Ovis aries (taxid: 9940)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
432104010	1043	Sodium/potassium-transporting ATPase sub	0.806	0.167	0.485	9e-54
170039162	735	sodium/potassium-transporting ATPase alp	0.493	0.145	0.690	6e-48
312376147	1017	hypothetical protein AND_13095 [Anophele	0.511	0.109	0.692	9e-48
347968691	1040	AGAP002858-PC [Anopheles gambiae str. PE	0.493	0.102	0.705	1e-47
347968693	1000	AGAP002858-PD [Anopheles gambiae str. PE	0.493	0.107	0.705	1e-47
158290453	1000	AGAP002858-PA [Anopheles gambiae str. PE	0.493	0.107	0.705	1e-47
347968697	1000	AGAP002858-PB [Anopheles gambiae str. PE	0.493	0.107	0.705	1e-47
432542	1037	sodium pump alpha subunit [Ctenocephalid	0.493	0.103	0.697	2e-47
195145476	895	GL24291 [Drosophila persimilis] gi|19410	0.493	0.119	0.683	2e-47
407731564	1037	Na+,K+ ATPase alpha-subunit 1 [Boisea tr	0.493	0.103	0.697	2e-47

>gi|432104010|gb|ELK30843.1| Sodium/potassium-transporting ATPase subunit alpha-1 [Myotis davidii]

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 143/239 (59%), Gaps = 64/239 (26%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L+RGL+ A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 51  HKLSLDELHRKYGTDLSRGLSTARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 110

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQA+T EEP +DN                                LY
Sbjct: 111 LWIGAILCFLAYGIQAATEEEPQNDN--------------------------------LY 138

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ----------FRVTQSHVLIFDL- 173
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ            +    V++ DL 
Sbjct: 139 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLV 198

Query: 174 ---------------------LWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
                                L+LG+ L+ V +ITG FSYYQE KSS+IMESFKNMVPQ
Sbjct: 199 EVKGGDRIPADLRIISANGCKLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 257

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170039162|ref|XP_001847414.1| sodium/potassium-transporting ATPase alpha chain [Culex quinquefasciatus] gi|167862764|gb|EDS26147.1| sodium/potassium-transporting ATPase alpha chain [Culex quinquefasciatus]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 104/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFA+LLWIGAILCF+AY+IQAST
Sbjct: 40  GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFAMLLWIGAILCFVAYSIQAST 99

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
           VEEPADDN                                LYLGIVL+AVVIVTGIFSYY
Sbjct: 100 VEEPADDN--------------------------------LYLGIVLSAVVIVTGIFSYY 127

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 128 QESKSSKIMESFKNMVPQF 146

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376147|gb|EFR23325.1| hypothetical protein AND_13095 [Anopheles darlingi]

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 104/143 (72%), Gaps = 32/143 (22%)

Query: 19  ALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTI 78
           A  +GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFALLLWIGAILCFIAY I
Sbjct: 38  AKGKGLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFALLLWIGAILCFIAYGI 97

Query: 79  QASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGI 138
           QASTVEEPADDN                                LYLGIVL AVVIVTGI
Sbjct: 98  QASTVEEPADDN--------------------------------LYLGIVLAAVVIVTGI 125

Query: 139 FSYYQESKSSAIMDSFKNLVPQF 161
           FSYYQESKSS IM+SFKN+VPQF
Sbjct: 126 FSYYQESKSSKIMESFKNMVPQF 148

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968691|ref|XP_003436267.1| AGAP002858-PC [Anopheles gambiae str. PEST] gi|333467885|gb|EGK96744.1| AGAP002858-PC [Anopheles gambiae str. PEST]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 103/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFALLLWIGAILCFIAY+IQAST
Sbjct: 79  GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFALLLWIGAILCFIAYSIQAST 138

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
           VEEPADDN                                LYLGIVL AVVIVTGIFSYY
Sbjct: 139 VEEPADDN--------------------------------LYLGIVLAAVVIVTGIFSYY 166

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 167 QESKSSKIMESFKNMVPQF 185

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968693|ref|XP_003436268.1| AGAP002858-PD [Anopheles gambiae str. PEST] gi|347968695|ref|XP_003436269.1| AGAP002858-PE [Anopheles gambiae str. PEST] gi|333467886|gb|EGK96745.1| AGAP002858-PD [Anopheles gambiae str. PEST] gi|333467887|gb|EGK96746.1| AGAP002858-PE [Anopheles gambiae str. PEST]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 103/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFALLLWIGAILCFIAY+IQAST
Sbjct: 39  GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFALLLWIGAILCFIAYSIQAST 98

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
           VEEPADDN                                LYLGIVL AVVIVTGIFSYY
Sbjct: 99  VEEPADDN--------------------------------LYLGIVLAAVVIVTGIFSYY 126

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 127 QESKSSKIMESFKNMVPQF 145

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158290453|ref|XP_312058.4| AGAP002858-PA [Anopheles gambiae str. PEST] gi|157017901|gb|EAA44868.4| AGAP002858-PA [Anopheles gambiae str. PEST]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 103/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFALLLWIGAILCFIAY+IQAST
Sbjct: 39  GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFALLLWIGAILCFIAYSIQAST 98

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
           VEEPADDN                                LYLGIVL AVVIVTGIFSYY
Sbjct: 99  VEEPADDN--------------------------------LYLGIVLAAVVIVTGIFSYY 126

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 127 QESKSSKIMESFKNMVPQF 145

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968697|ref|XP_003436270.1| AGAP002858-PB [Anopheles gambiae str. PEST] gi|333467884|gb|EGK96743.1| AGAP002858-PB [Anopheles gambiae str. PEST]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 103/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFALLLWIGAILCFIAY+IQAST
Sbjct: 39  GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFALLLWIGAILCFIAYSIQAST 98

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
           VEEPADDN                                LYLGIVL AVVIVTGIFSYY
Sbjct: 99  VEEPADDN--------------------------------LYLGIVLAAVVIVTGIFSYY 126

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 127 QESKSSKIMESFKNMVPQF 145

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432542|gb|AAB28239.1| sodium pump alpha subunit [Ctenocephalides felis]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 103/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFALLLWIGAILCF+AY+IQAST
Sbjct: 76  GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFALLLWIGAILCFVAYSIQAST 135

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
           VEEPADDN                                LYLGIVL AVVIVTGIFSYY
Sbjct: 136 VEEPADDN--------------------------------LYLGIVLAAVVIVTGIFSYY 163

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 164 QESKSSKIMESFKNMVPQF 182

Source: Ctenocephalides felis

Species: Ctenocephalides felis

Genus: Ctenocephalides

Family: Pulicidae

Order: Siphonaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195145476|ref|XP_002013718.1| GL24291 [Drosophila persimilis] gi|194102661|gb|EDW24704.1| GL24291 [Drosophila persimilis]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 103/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFA+LLWIGAILCF+AY+IQAST
Sbjct: 72  GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFAMLLWIGAILCFVAYSIQAST 131

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
            EEPADDN                                LYLGIVL+AVVIVTGIFSYY
Sbjct: 132 SEEPADDN--------------------------------LYLGIVLSAVVIVTGIFSYY 159

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 160 QESKSSKIMESFKNMVPQF 178

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|407731564|gb|AFU25668.1| Na+,K+ ATPase alpha-subunit 1 [Boisea trivittata]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 103/139 (74%), Gaps = 32/139 (23%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GLTHAKAKE LERDGPNALTPPK TPEW+KFCKQLFGGFALLLW+GAILCFIAY+IQAST
Sbjct: 76  GLTHAKAKENLERDGPNALTPPKTTPEWVKFCKQLFGGFALLLWVGAILCFIAYSIQAST 135

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
           VEEP+DDN                                LYLGIVL AVVIVTGIFSYY
Sbjct: 136 VEEPSDDN--------------------------------LYLGIVLAAVVIVTGIFSYY 163

Query: 143 QESKSSAIMDSFKNLVPQF 161
           QESKSS IM+SFKN+VPQF
Sbjct: 164 QESKSSRIMESFKNMVPQF 182

Source: Boisea trivittata

Species: Boisea trivittata

Genus: Boisea

Family: Rhopalidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
FB|FBgn0002921	1041	Atpalpha "Na pump alpha subuni	0.317	0.066	0.884	4.6e-45
UNIPROTKB|Q5TC01	144	ATP1A1 "Sodium/potassium-trans	0.400	0.604	0.666	3.2e-43
UNIPROTKB|Q4H132	1028	atn1 "Na, K-ATPase alpha subun	0.331	0.070	0.777	3.8e-41
ZFIN|ZDB-GENE-001212-6	1017	atp1a2a "ATPase, Na+/K+ transp	0.373	0.079	0.695	4.7e-41
UNIPROTKB|F5H3A1	1023	ATP1A1 "Sodium/potassium-trans	0.400	0.085	0.666	9.8e-41
UNIPROTKB|P05023	1023	ATP1A1 "Sodium/potassium-trans	0.400	0.085	0.666	9.8e-41
UNIPROTKB|Q5RDR3	1023	ATP1A1 "Sodium/potassium-trans	0.400	0.085	0.666	9.8e-41
UNIPROTKB|Q92030	1022	atp1a1 "Sodium/potassium-trans	0.400	0.085	0.643	1e-40
UNIPROTKB|Q56V60	1023	Q56V60 "Sodium potassium ATPas	0.400	0.085	0.632	1e-40
UNIPROTKB|Q9YH26	1023	atp1a1 "Sodium/potassium-trans	0.400	0.085	0.655	1.6e-40

FB|FBgn0002921 Atpalpha "Na pump alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 4.6e-45, Sum P(2) = 4.6e-45
 Identities = 61/69 (88%), Positives = 66/69 (95%)

Query:    23 GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
             GL+HAKAKE LERDGPNALTPPKQTPEW+KFCK LFGGFA+LLWIGAILCF+AY+IQAST
Sbjct:    80 GLSHAKAKENLERDGPNALTPPKQTPEWVKFCKNLFGGFAMLLWIGAILCFVAYSIQAST 139

Query:    83 VEEPADDNL 91
              EEPADDNL
Sbjct:   140 SEEPADDNL 148

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS;NAS;IMP

GO:0009612 "response to mechanical stimulus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0006812 "cation transport" evidence=NAS;IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IC;ISS;NAS

GO:0008324 "cation transmembrane transporter activity" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0050905 "neuromuscular process" evidence=IMP

GO:0001894 "tissue homeostasis" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0005918 "septate junction" evidence=IDA

GO:0019991 "septate junction assembly" evidence=IMP

GO:0035152 "regulation of tube architecture, open tracheal system" evidence=TAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|Q5TC01 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query:     5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
             H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEWIKFC+QLFGGF++L
Sbjct:    13 HKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFCRQLFGGFSML 72

Query:    65 LWIGAILCFIAYTIQASTVEEPADDNL 91
             LWIGAILCF+AY+IQA+T EEP +DNL
Sbjct:    73 LWIGAILCFLAYSIQAATEEEPQNDNL 99

GO:0002026 "regulation of the force of heart contraction" evidence=IEA

GO:0002028 "regulation of sodium ion transport" evidence=IEA

GO:0003869 "4-nitrophenylphosphatase activity" evidence=IEA

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0010107 "potassium ion import" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0031402 "sodium ion binding" evidence=IEA

GO:0031947 "negative regulation of glucocorticoid biosynthetic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IEA

GO:0045822 "negative regulation of heart contraction" evidence=IEA

GO:0045823 "positive regulation of heart contraction" evidence=IEA

GO:0045989 "positive regulation of striated muscle contraction" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0071260 "cellular response to mechanical stimulus" evidence=IEA

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=IEA

UNIPROTKB|Q4H132 atn1 "Na, K-ATPase alpha subunit" [Squalus acanthias (taxid:7797)]

 Score = 317 (116.6 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
 Identities = 56/72 (77%), Positives = 67/72 (93%)

Query:    20 LTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQ 79
             LTRGLT+A+AKE+L RDGPN+LTPP  TPEWIKFC+QLFGGF++LLWIGAILCF+AY IQ
Sbjct:    64 LTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQ 123

Query:    80 ASTVEEPADDNL 91
             A+T +EPA+DNL
Sbjct:   124 AATEDEPANDNL 135

GO:0016021 "integral to membrane" evidence=ISS

ZFIN|ZDB-GENE-001212-6 atp1a2a "ATPase, Na+/K+ transporting, alpha 2a polypeptide" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 4.7e-41, Sum P(2) = 4.7e-41
 Identities = 57/82 (69%), Positives = 69/82 (84%)

Query:    10 EVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGA 69
             E+  R G + L RGLTH +A E+L RDGPNALTPP  TPEW+KFCKQLFGGF++LLWIGA
Sbjct:    45 ELSTRYGVD-LARGLTHKRAMEILARDGPNALTPPPTTPEWVKFCKQLFGGFSILLWIGA 103

Query:    70 ILCFIAYTIQASTVEEPADDNL 91
             ILCF+AY+IQA+T +EP +DNL
Sbjct:   104 ILCFLAYSIQAATEDEPVNDNL 125

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0007507 "heart development" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0010084 "specification of organ axis polarity" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0042044 "fluid transport" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IGI;IMP

GO:0051480 "cytosolic calcium ion homeostasis" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F5H3A1 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 9.8e-41, Sum P(2) = 9.8e-41
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query:     5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
             H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEWIKFC+QLFGGF++L
Sbjct:    44 HKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFCRQLFGGFSML 103

Query:    65 LWIGAILCFIAYTIQASTVEEPADDNL 91
             LWIGAILCF+AY+IQA+T EEP +DNL
Sbjct:   104 LWIGAILCFLAYSIQAATEEEPQNDNL 130

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0002026 "regulation of the force of heart contraction" evidence=IEA

GO:0002028 "regulation of sodium ion transport" evidence=IEA

GO:0003869 "4-nitrophenylphosphatase activity" evidence=IEA

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0010107 "potassium ion import" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0031402 "sodium ion binding" evidence=IEA

GO:0031947 "negative regulation of glucocorticoid biosynthetic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IEA

GO:0045822 "negative regulation of heart contraction" evidence=IEA

GO:0045823 "positive regulation of heart contraction" evidence=IEA

GO:0045989 "positive regulation of striated muscle contraction" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0071260 "cellular response to mechanical stimulus" evidence=IEA

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=IEA

UNIPROTKB|P05023 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 9.8e-41, Sum P(2) = 9.8e-41
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query:     5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
             H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEWIKFC+QLFGGF++L
Sbjct:    44 HKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFCRQLFGGFSML 103

Query:    65 LWIGAILCFIAYTIQASTVEEPADDNL 91
             LWIGAILCF+AY+IQA+T EEP +DNL
Sbjct:   104 LWIGAILCFLAYSIQAATEEEPQNDNL 130

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS

GO:0002028 "regulation of sodium ion transport" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=TAS

GO:0034220 "ion transmembrane transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0051087 "chaperone binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

UNIPROTKB|Q5RDR3 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Pongo abelii (taxid:9601)]

 Score = 314 (115.6 bits), Expect = 9.8e-41, Sum P(2) = 9.8e-41
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query:     5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
             H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEWIKFC+QLFGGF++L
Sbjct:    44 HKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFCRQLFGGFSML 103

Query:    65 LWIGAILCFIAYTIQASTVEEPADDNL 91
             LWIGAILCF+AY+IQA+T EEP +DNL
Sbjct:   104 LWIGAILCFLAYSIQAATEEEPQNDNL 130

GO:0002028 "regulation of sodium ion transport" evidence=ISS

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q92030 atp1a1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Anguilla anguilla (taxid:7936)]

 Score = 308 (113.5 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
 Identities = 56/87 (64%), Positives = 69/87 (79%)

Query:     5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
             H    + L R     LTRGLT ++A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct:    43 HKLTLDELHRKYGTDLTRGLTSSRAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 102

Query:    65 LWIGAILCFIAYTIQASTVEEPADDNL 91
             LWIGAILCF+AY IQA++ +EPA+DNL
Sbjct:   103 LWIGAILCFLAYGIQAASEDEPANDNL 129

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q56V60 Q56V60 "Sodium potassium ATPase alpha subunit" [Rhabdosargus sarba (taxid:182642)]

 Score = 308 (113.5 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
 Identities = 55/87 (63%), Positives = 71/87 (81%)

Query:     5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
             H    + L R     L+RGL++++AKE+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct:    44 HKLTLDELHRKYGTDLSRGLSNSRAKEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 103

Query:    65 LWIGAILCFIAYTIQASTVEEPADDNL 91
             LWIGAILCF+AY IQA++ +EPA+DNL
Sbjct:   104 LWIGAILCFLAYGIQAASEDEPANDNL 130

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q9YH26 atp1a1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Oreochromis mossambicus (taxid:8127)]

 Score = 313 (115.2 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
 Identities = 57/87 (65%), Positives = 70/87 (80%)

Query:     5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
             H    + L R     LTRGL+ ++AKE+L RDGPNALTPP  TPEW+KFCKQLFGGF++L
Sbjct:    44 HKLTLDELHRKYGTDLTRGLSSSRAKEILARDGPNALTPPPTTPEWVKFCKQLFGGFSML 103

Query:    65 LWIGAILCFIAYTIQASTVEEPADDNL 91
             LWIGAILCF+AY IQA++ +EPA+DNL
Sbjct:   104 LWIGAILCFLAYGIQAASEDEPANDNL 130

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P05023	AT1A1_HUMAN	3, ., 6, ., 3, ., 9	0.5576	0.5714	0.1212	yes	N/A
P18907	AT1A1_HORSE	3, ., 6, ., 3, ., 9	0.5512	0.5714	0.1214	yes	N/A
P05024	AT1A1_PIG	3, ., 6, ., 3, ., 9	0.5512	0.5714	0.1214	yes	N/A
P50997	AT1A1_CANFA	3, ., 6, ., 3, ., 9	0.5512	0.5714	0.1214	yes	N/A
Q5RDR3	AT1A1_PONAB	3, ., 6, ., 3, ., 9	0.5576	0.5714	0.1212	yes	N/A
P24798	AT1A3_CHICK	3, ., 6, ., 3, ., 9	0.5448	0.5714	0.1227	yes	N/A
Q08DA1	AT1A1_BOVIN	3, ., 6, ., 3, ., 9	0.5448	0.5714	0.1214	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	217
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	4e-61
smart00831	75	smart00831, Cation_ATPase_N, Cation transporter/AT	1e-17
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	1e-14
pfam00690	69	pfam00690, Cation_ATPase_N, Cation transporter/ATP	6e-13
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	1e-05
TIGR01647	754	TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e	7e-04
PRK15122	903	PRK15122, PRK15122, magnesium-transporting ATPase;	0.004

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score =  205 bits (522), Expect = 4e-61
 Identities = 86/157 (54%), Positives = 105/157 (66%), Gaps = 32/157 (20%)

Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + LER     L++GL+ A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 18  HKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 77

Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQAST EEP +DN                                LY
Sbjct: 78  LWIGAILCFLAYGIQASTEEEPQNDN--------------------------------LY 105

Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF 161
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ 
Sbjct: 106 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQ 142

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus

 Score = 73.8 bits (182), Expect = 1e-17
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 8  AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67
           +EVLER   + L +GL+  +A   LER GPN L PPK+T   ++F +Q       +L  
Sbjct: 9  LEEVLERLQTD-LEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNPLIYILLA 67

Query: 68 GAILCFIA 75
           A+L  + 
Sbjct: 68 AAVLSALL 75

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases. Length = 75

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 29/40 (72%), Positives = 34/40 (85%)

Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
           D L+LG+ L+ V +ITG FSYYQE KSS+IMESFKNMVPQ
Sbjct: 102 DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 141

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus

 Score = 61.4 bits (150), Expect = 6e-13
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 8  AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67
           +EVL R G + L +GLT A+A+E LE+ GPN L   K    W  F +Q      ++L I
Sbjct: 6  VEEVLARLGTD-LEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVIILLI 64

Query: 68 GAILC 72
           AI+ 
Sbjct: 65 AAIVS 69

Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. Length = 69

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 41/155 (26%)

Query: 7   KAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLW 66
             +  L  +   + T GL+  + K  L++ GPN L   K+     KF +Q    F +LL 
Sbjct: 28  VERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLL 87

Query: 67  IGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLG 126
           + A+L                                  +                    
Sbjct: 88  VAALLSAF-------------------------------VGDWVDA----------GVDA 106

Query: 127 IVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF 161
           IV+  VV++  +  + QE ++   +++ K +    
Sbjct: 107 IVILLVVVINALLGFVQEYRAEKALEALKKMSSPK 141

Length = 917

>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 23 GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFI 74
          GLT A+AK+ L + GPN L P K+    +KF    +   + ++   AI+   
Sbjct: 1  GLTSAEAKKRLAKYGPNEL-PEKKVSPLLKFLGFFWNPLSWVMEAAAIIAIA 51

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast. Length = 754

>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 18  NALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGF-----ALLLWIGAILC 72
           N   +GLT   A E L+R GPN +   K     +    QL   F      +L+ + AI  
Sbjct: 40  NTHRQGLTEEDAAERLQRYGPNEVAHEKPPHALV----QLLQAFNNPFIYVLMVLAAISF 95

Query: 73  FIAYTIQASTVEE 85
           F  Y +     EE
Sbjct: 96  FTDYWLPLRRGEE 108

Length = 903

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.92
KOG0202|consensus	972		99.91
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.89
KOG0203|consensus	1019		99.88
PRK15122	903	magnesium-transporting ATPase; Provisional	99.88
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.88
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.86
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.85
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.85
KOG0204|consensus	1034		99.82
PF00690	69	Cation_ATPase_N: Cation transporter/ATPase, N-term	99.8
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	99.8
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	99.77
smart00831	64	Cation_ATPase_N Cation transporter/ATPase, N-termi	99.71
KOG0205|consensus	942		99.64
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	99.54
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.19
KOG0203|consensus	1019		99.11
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	98.61
KOG0208|consensus	1140		98.57
KOG0202|consensus	972		98.47
PRK01122	679	potassium-transporting ATPase subunit B; Provision	98.29
PRK14010	673	potassium-transporting ATPase subunit B; Provision	98.26
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	98.07
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	98.0
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	97.93
PRK15122	903	magnesium-transporting ATPase; Provisional	97.91
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	97.86
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	97.84
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	97.7
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	97.37
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	97.26
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	97.18
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.06
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	96.81
PF00122	230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	96.76
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	96.31
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	96.11
KOG0209|consensus	1160		93.52
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	92.04
KOG0205|consensus	942		92.0
PF00690	69	Cation_ATPase_N: Cation transporter/ATPase, N-term	91.74
PRK14010	673	potassium-transporting ATPase subunit B; Provision	91.06
PRK10671	834	copA copper exporting ATPase; Provisional	90.14
PLN03190	1178	aminophospholipid translocase; Provisional	89.22
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	88.93
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	87.58
PRK01122	679	potassium-transporting ATPase subunit B; Provision	86.3

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.92  E-value=2e-25  Score=225.68  Aligned_cols=135  Identities=24%  Similarity=0.258  Sum_probs=127.4

Q ss_pred             ccccc-CHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q psy2749           2 GLTHA-KAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQA   80 (217)
Q Consensus         2 ~~~~~-~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~   80 (217)
                      +.||. +++++++.|+ |+..+|||++||++|+++||+|++++++++|+|++|+++|+||++++|+++|++|++++    
T Consensus         5 ~~~~~~~~~~v~~~l~-t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~----   79 (1053)
T TIGR01523         5 NAYFSDIADEAAEFIG-TSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMH----   79 (1053)
T ss_pred             CchhhCCHHHHHHHhC-cCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence            56775 9999999999 98889999999999999999999999999999999999999999999999999999874    


Q ss_pred             cCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCc
Q psy2749          81 STVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ  160 (217)
Q Consensus        81 ~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~  160 (217)
                                                               +|.+|++|++++++|+.++++||+++++++++|+++.++
T Consensus        80 -----------------------------------------~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~  118 (1053)
T TIGR01523        80 -----------------------------------------DWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASP  118 (1053)
T ss_pred             -----------------------------------------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence                                                     499999999999999999999999999999999999999


Q ss_pred             eeEEeeecch----hhhhhhhhhhhh
Q psy2749         161 FRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       161 ~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +++|+|||..    .+++++|||+.+
T Consensus       119 ~~~ViRdg~~~~I~a~eLVpGDIv~L  144 (1053)
T TIGR01523       119 MAHVIRNGKSDAIDSHDLVPGDICLL  144 (1053)
T ss_pred             ceEEEeCCeeeecCHhhCCCCCEEEE
Confidence            9999999975    469999999877

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>KOG0202|consensus

Probab=99.91  E-value=2.6e-25  Score=214.56  Aligned_cols=135  Identities=20%  Similarity=0.288  Sum_probs=125.6

Q ss_pred             cccccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcc
Q psy2749           2 GLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAS   81 (217)
Q Consensus         2 ~~~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~   81 (217)
                      +.|..+++|+++.|+ ||+++|||++|+.+|+++||.|+++....+|+|+++++||.|+++.||+++|++||++.     
T Consensus         3 ~~~~~~v~e~~~~f~-t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~-----   76 (972)
T KOG0202|consen    3 EAHAKSVSEVLAEFG-TDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLA-----   76 (972)
T ss_pred             chhcCcHHHHHHHhC-cCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----
Confidence            345569999999999 99999999999999999999999999999999999999999999999999999999985     


Q ss_pred             CCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCce
Q psy2749          82 TVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF  161 (217)
Q Consensus        82 ~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~  161 (217)
                                                              .|.++++|..++++|+.+++||||++||++++|+++.++.
T Consensus        77 ----------------------------------------~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~  116 (972)
T KOG0202|consen   77 ----------------------------------------DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPM  116 (972)
T ss_pred             ----------------------------------------hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCcc
Confidence                                                    2678899999999999999999999999999999999999


Q ss_pred             eEEeeecch----hhhhhhhhhhhh
Q psy2749         162 RVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       162 ~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      ++|+|+|+.    ..++|+|||...
T Consensus       117 ~~V~R~gk~~~i~A~eLVPGDiV~l  141 (972)
T KOG0202|consen  117 AHVLRSGKLQHILARELVPGDIVEL  141 (972)
T ss_pred             ceEEecCcccceehhccCCCCEEEE
Confidence            999999975    359999998654

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.89  E-value=8.8e-23  Score=205.87  Aligned_cols=146  Identities=56%  Similarity=0.961  Sum_probs=128.6

Q ss_pred             cc-cCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccC
Q psy2749           4 TH-AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST   82 (217)
Q Consensus         4 ~~-~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~   82 (217)
                      || .+.++++++|+ |+..+|||++||++|+++||+|++++++++++|++|+++|++|++++|+++|++|++++.+....
T Consensus        17 ~~~~~~~~~~~~l~-t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~   95 (997)
T TIGR01106        17 DHKLSLDELERKYG-TDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAST   95 (997)
T ss_pred             chhCCHHHHHHHhC-cCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc
Confidence            55 59999999999 99889999999999999999999999999999999999999999999999999999876654211


Q ss_pred             CCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCcee
Q psy2749          83 VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFR  162 (217)
Q Consensus        83 ~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~  162 (217)
                      + ++                               ...+.|++|++|++++++++.++++||+|+++.+++|+++.+.++
T Consensus        96 ~-~~-------------------------------~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~  143 (997)
T TIGR01106        96 E-EE-------------------------------PQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQA  143 (997)
T ss_pred             C-CC-------------------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCee
Confidence            1 00                               011359999999999999999999999999999999999999999


Q ss_pred             EEeeecch----hhhhhhhhhhhh
Q psy2749         163 VTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       163 ~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +|+|+|..    .+++++||++.+
T Consensus       144 ~ViRdg~~~~I~~~~lv~GDiv~l  167 (997)
T TIGR01106       144 LVIRDGEKMSINAEQVVVGDLVEV  167 (997)
T ss_pred             EEEECCEEEEeeHHHCCCCCEEEE
Confidence            99999975    469999998876

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>KOG0203|consensus

Probab=99.88  E-value=9.1e-24  Score=203.83  Aligned_cols=179  Identities=53%  Similarity=0.802  Sum_probs=160.8

Q ss_pred             CcccccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q psy2749           1 MGLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQA   80 (217)
Q Consensus         1 ~~~~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~   80 (217)
                      |+.++.+.+|++++++ +|..+|||.++|++++++.|+|.++|||..+.|.+|++|+++.+.++||++|++||+.+.+++
T Consensus        37 ~~~H~~~~~eL~~r~~-t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~  115 (1019)
T KOG0203|consen   37 MDDHKLSVDELCERYG-TSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQA  115 (1019)
T ss_pred             eccccCCHHHHHHHhc-CChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Confidence            4556679999999999 999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             cCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCc
Q psy2749          81 STVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ  160 (217)
Q Consensus        81 ~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~  160 (217)
                      +..++++.+|                                ++.|+++..++++.++++|+||.++++.+++++++++.
T Consensus       116 s~~~~~~~~n--------------------------------ly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~  163 (1019)
T KOG0203|consen  116 STEDDPSDDN--------------------------------LYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQ  163 (1019)
T ss_pred             ccCCCCCCcc--------------------------------eEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchh
Confidence            6555554444                                78999999999999999999999999999999999999


Q ss_pred             eeEEeeecch----hhhhhhhhhhhh---------hhhhhchhhhhhhhhHHHHHHHHhhcCCCC
Q psy2749         161 FRVTQSHVLI----FDLLWLGIALTF---------VNVITGLFSYYQENKSSRIMESFKNMVPQV  212 (217)
Q Consensus       161 ~~~ViR~g~~----~~~l~lg~iL~~---------Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~  212 (217)
                      +++|+|+|..    .+++++||++..         +.++.+..-++|+++-..-+|.+..+.+..
T Consensus       164 ~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t  228 (1019)
T KOG0203|consen  164 QALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFT  228 (1019)
T ss_pred             hheeeecceeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCcccc
Confidence            9999999985    469999997665         778889999999999888888877776654

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.88  E-value=2.8e-22  Score=200.40  Aligned_cols=141  Identities=20%  Similarity=0.283  Sum_probs=125.3

Q ss_pred             cCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCC
Q psy2749           6 AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEE   85 (217)
Q Consensus         6 ~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~   85 (217)
                      .+.+++++.|+ ++ .+|||++||++|+++||+|++++++++++|++|+++|+||++++|+++|++|++++.+.+...  
T Consensus        30 ~~~~~v~~~l~-~~-~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~--  105 (903)
T PRK15122         30 NSLEETLANLN-TH-RQGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRR--  105 (903)
T ss_pred             CCHHHHHHHhC-CC-CCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccC--
Confidence            48899999999 88 589999999999999999999999999999999999999999999999999999976543110  


Q ss_pred             CCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe
Q psy2749          86 PADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ  165 (217)
Q Consensus        86 ~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi  165 (217)
                                                      ...++|.++++|++++++++.++++||+++++++++|+++.++.++|+
T Consensus       106 --------------------------------~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~  153 (903)
T PRK15122        106 --------------------------------GEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL  153 (903)
T ss_pred             --------------------------------CccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE
Confidence                                            011369999999999999999999999999999999999999999999


Q ss_pred             eec------c----hhhhhhhhhhhhh
Q psy2749         166 SHV------L----IFDLLWLGIALTF  182 (217)
Q Consensus       166 R~g------~----~~~~l~lg~iL~~  182 (217)
                      |+|      .    ..+++++||++.+
T Consensus       154 Rdg~~~~~g~~~~I~~~eLv~GDiV~l  180 (903)
T PRK15122        154 RRGHAGAEPVRREIPMRELVPGDIVHL  180 (903)
T ss_pred             ECCccCCCCeEEEEEHHHCCCCCEEEE
Confidence            995      3    2469999999776

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.88  E-value=2.1e-22  Score=200.97  Aligned_cols=134  Identities=18%  Similarity=0.206  Sum_probs=124.8

Q ss_pred             ccc-cCHHHHHHHcCCCCCCCCCC-HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhhh
Q psy2749           3 LTH-AKAKEVLERDGPNALTRGLT-HAKAKEVLERDGPNALTPPKQTPEWIKFCKQL-FGGFALLLWIGAILCFIAYTIQ   79 (217)
Q Consensus         3 ~~~-~~~~~l~~~l~~t~~~~GLt-~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~-~d~~~~iL~~~ails~~~~~~~   79 (217)
                      .|| .+.+++++.|+ |+.++||| ++|+++|+++||+|++++++++|+|++|+++| .||++++|++++++|++++   
T Consensus         3 ~~~~~~~~~v~~~l~-t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g---   78 (884)
T TIGR01522         3 QYCELSVEETCSKLQ-TDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMG---   78 (884)
T ss_pred             chhhCCHHHHHHHhC-cCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHc---
Confidence            455 49999999999 99889999 89999999999999999999999999999999 9999999999999999873   


Q ss_pred             ccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCC
Q psy2749          80 ASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVP  159 (217)
Q Consensus        80 ~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~  159 (217)
                                                                +|.++++|++++++++.++++||+++++.+++|+++.+
T Consensus        79 ------------------------------------------~~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~  116 (884)
T TIGR01522        79 ------------------------------------------NIDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVP  116 (884)
T ss_pred             ------------------------------------------chhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                                                      48999999999999999999999999999999999999


Q ss_pred             ceeEEeeecch----hhhhhhhhhhhh
Q psy2749         160 QFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       160 ~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      ++++|+|||..    .+++++||++.+
T Consensus       117 ~~~~ViRdg~~~~I~~~eLv~GDiv~l  143 (884)
T TIGR01522       117 PECHLIREGKLEHVLASTLVPGDLVCL  143 (884)
T ss_pred             CeeEEEECCEEEEEEHHHCccCCEEEe
Confidence            99999999975    469999999876

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.86  E-value=1.4e-21  Score=195.26  Aligned_cols=130  Identities=21%  Similarity=0.322  Sum_probs=120.5

Q ss_pred             cCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCC
Q psy2749           6 AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEE   85 (217)
Q Consensus         6 ~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~   85 (217)
                      .+.+++++.|+ ++. +|||++||++|+++||+|+++.++++|+|++++++|+|||+++|+++|++|++++         
T Consensus        52 ~~~~~v~~~l~-~~~-~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~---------  120 (902)
T PRK10517         52 MPEEELWKTFD-THP-EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATE---------  120 (902)
T ss_pred             CCHHHHHHHhC-CCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc---------
Confidence            47899999999 885 7999999999999999999999999999999999999999999999999999873         


Q ss_pred             CCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe
Q psy2749          86 PADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ  165 (217)
Q Consensus        86 ~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi  165 (217)
                                                          +|.++++|++++++++.++++||+|+++++++|+++.+++++|+
T Consensus       121 ------------------------------------~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi  164 (902)
T PRK10517        121 ------------------------------------DLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL  164 (902)
T ss_pred             ------------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence                                                48999999999999999999999999999999999999999999


Q ss_pred             eec------ch----hhhhhhhhhhhh
Q psy2749         166 SHV------LI----FDLLWLGIALTF  182 (217)
Q Consensus       166 R~g------~~----~~~l~lg~iL~~  182 (217)
                      |+|      ..    .+++++||++.+
T Consensus       165 R~g~~~~~g~~~~I~~~eLvpGDiV~l  191 (902)
T PRK10517        165 RVINDKGENGWLEIPIDQLVPGDIIKL  191 (902)
T ss_pred             ECCccCCCCeEEEEEHHhCCCCCEEEE
Confidence            994      32    469999999776

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.85  E-value=2.1e-21  Score=193.46  Aligned_cols=132  Identities=20%  Similarity=0.305  Sum_probs=122.1

Q ss_pred             cccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCC
Q psy2749           4 THAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTV   83 (217)
Q Consensus         4 ~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~   83 (217)
                      +..+.+++++.|+ ++. +|||++||++|+++||+|++++++++++|++++++|+||++++|++++++|++++       
T Consensus        16 ~~~~~~~~~~~l~-~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~-------   86 (867)
T TIGR01524        16 SQMGKETLLRKLG-VHE-TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTD-------   86 (867)
T ss_pred             HhCCHHHHHHHhC-CCC-CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh-------
Confidence            4458899999999 874 7999999999999999999999998999999999999999999999999999873       


Q ss_pred             CCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeE
Q psy2749          84 EEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRV  163 (217)
Q Consensus        84 ~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~  163 (217)
                                                            +|.++++|++++++++.++++||+|+++++++|+++.++.++
T Consensus        87 --------------------------------------~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~  128 (867)
T TIGR01524        87 --------------------------------------DLEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTAT  128 (867)
T ss_pred             --------------------------------------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeE
Confidence                                                  489999999999999999999999999999999999999999


Q ss_pred             Eee------ecch----hhhhhhhhhhhh
Q psy2749         164 TQS------HVLI----FDLLWLGIALTF  182 (217)
Q Consensus       164 ViR------~g~~----~~~l~lg~iL~~  182 (217)
                      |+|      ||..    .+++++||++.+
T Consensus       129 V~R~~~~~~dg~~~~I~~~eLv~GDiV~l  157 (867)
T TIGR01524       129 VLRVINENGNGSMDEVPIDALVPGDLIEL  157 (867)
T ss_pred             EEEecccCCCCeEEEEEhhcCCCCCEEEE
Confidence            999      7864    469999999876

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.85  E-value=6.9e-21  Score=191.22  Aligned_cols=144  Identities=11%  Similarity=0.072  Sum_probs=124.9

Q ss_pred             cCHHHHHHHcCCCCCCCCCC--HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCC
Q psy2749           6 AKAKEVLERDGPNALTRGLT--HAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTV   83 (217)
Q Consensus         6 ~~~~~l~~~l~~t~~~~GLt--~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~   83 (217)
                      .+.++++++|+ |+.++|||  ++||++|+++||+|++++++++++|++++++|++|++++|++++++|++++.+.+...
T Consensus        42 ~~~~~~~~~l~-t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~  120 (941)
T TIGR01517        42 GGAEGIATKLK-TDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEG  120 (941)
T ss_pred             CCHHHHHHHhC-cCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhcccccc
Confidence            37889999999 99889999  9999999999999999999999999999999999999999999999999875432100


Q ss_pred             CCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhcc-CCcee
Q psy2749          84 EEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNL-VPQFR  162 (217)
Q Consensus        84 ~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~-~~~~~  162 (217)
                       .   .                            +...+|+++++|++++++++.++++||+++++.+++|++. .++.+
T Consensus       121 -~---~----------------------------~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~  168 (941)
T TIGR01517       121 -K---A----------------------------DTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKI  168 (941)
T ss_pred             -c---C----------------------------ccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCce
Confidence             0   0                            0113599999999999999999999999999999999875 46799


Q ss_pred             EEeeecch----hhhhhhhhhhhh
Q psy2749         163 VTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       163 ~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +|+|||..    .+++++||++.+
T Consensus       169 ~ViRdG~~~~I~~~~Lv~GDiV~l  192 (941)
T TIGR01517       169 AVIRGGQEQQISIHDIVVGDIVSL  192 (941)
T ss_pred             EEEECCEEEEEeHHHCCCCCEEEE
Confidence            99999975    469999999876

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>KOG0204|consensus

Probab=99.82  E-value=5.9e-21  Score=184.70  Aligned_cols=139  Identities=8%  Similarity=-0.011  Sum_probs=124.1

Q ss_pred             cCHHHHHHHcCCCCCCCCCCH--HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCC
Q psy2749           6 AKAKEVLERDGPNALTRGLTH--AKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTV   83 (217)
Q Consensus         6 ~~~~~l~~~l~~t~~~~GLt~--~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~   83 (217)
                      -.+++++++|+ ||+..||+.  +|..+|++.||.|.+|++|+++||+++|++|+|..++||.++|++|++++++.+.- 
T Consensus       101 gGv~gL~~~LK-t~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~-  178 (1034)
T KOG0204|consen  101 GGVEGLCKKLK-TDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSLGLGIYTPGI-  178 (1034)
T ss_pred             cCHHHHHHHhc-cCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHHhhhhccCCC-
Confidence            47899999999 999999997  88899999999999999999999999999999999999999999999999887521 


Q ss_pred             CCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCC-cee
Q psy2749          84 EEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVP-QFR  162 (217)
Q Consensus        84 ~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~-~~~  162 (217)
                                                          ..+|++|.+|++.|++.++++...+|+.++.++.|++... .+.
T Consensus       179 ------------------------------------~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~~~k~  222 (1034)
T KOG0204|consen  179 ------------------------------------EDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKRNIKF  222 (1034)
T ss_pred             ------------------------------------CcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhhceEE
Confidence                                                1269999999999999999999999999999999986544 578


Q ss_pred             EEeeecchh----hhhhhhhhhhh
Q psy2749         163 VTQSHVLIF----DLLWLGIALTF  182 (217)
Q Consensus       163 ~ViR~g~~~----~~l~lg~iL~~  182 (217)
                      .|+|+|...    -++++|||+-.
T Consensus       223 ~ViR~G~r~~isI~diVVGDIv~l  246 (1034)
T KOG0204|consen  223 QVIRGGRRQQISIYDLVVGDIVQL  246 (1034)
T ss_pred             EEEECCEEEEEEEeeeeeccEEEe
Confidence            999999864    38888887654

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.80  E-value=1.4e-19  Score=127.60  Aligned_cols=68  Identities=35%  Similarity=0.556  Sum_probs=65.5

Q ss_pred             cccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2749           4 THAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILC   72 (217)
Q Consensus         4 ~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails   72 (217)
                      |+.++++++++|+ |+..+||+++||++|+++||+|++++++++++|++++++|.|||+++|+++|++|
T Consensus         2 ~~~~~~~v~~~l~-t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS   69 (69)
T PF00690_consen    2 HQLSVEEVLKRLN-TSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS   69 (69)
T ss_dssp             TTSSHHHHHHHHT-TBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHC-cCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence            4459999999999 9999999999999999999999999999999999999999999999999999987

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=99.80  E-value=1.3e-19  Score=178.44  Aligned_cols=114  Identities=18%  Similarity=0.268  Sum_probs=105.8

Q ss_pred             CCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccch
Q psy2749          23 GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLF  102 (217)
Q Consensus        23 GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~  102 (217)
                      |||++||++|+++||+|++++ +++++|++|+++|++|+.++|++++++|++++                          
T Consensus         1 GLs~~ea~~r~~~~G~N~~~~-~~~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~--------------------------   53 (755)
T TIGR01647         1 GLTSAEAKKRLAKYGPNELPE-KKVSPLLKFLGFFWNPLSWVMEAAAIIAIALE--------------------------   53 (755)
T ss_pred             CcCHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHhchHHHHHHHHHHHHHhhc--------------------------
Confidence            899999999999999999998 45678999999999999999999999999873                          


Q ss_pred             hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhh
Q psy2749         103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGI  178 (217)
Q Consensus       103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~  178 (217)
                                         +|.++++|++++++++.++++||+++++.+++|+++.+++++|+|||..    .+++++||
T Consensus        54 -------------------~~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~Lv~GD  114 (755)
T TIGR01647        54 -------------------NWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLRDGKWQEIPASELVPGD  114 (755)
T ss_pred             -------------------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhCcCCC
Confidence                               4899999999999999999999999999999999999999999999975    46999999


Q ss_pred             hhhh
Q psy2749         179 ALTF  182 (217)
Q Consensus       179 iL~~  182 (217)
                      ++.+
T Consensus       115 iV~l  118 (755)
T TIGR01647       115 VVRL  118 (755)
T ss_pred             EEEE
Confidence            9776

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.77  E-value=8.5e-19  Score=175.72  Aligned_cols=138  Identities=21%  Similarity=0.252  Sum_probs=123.2

Q ss_pred             cccccCHH--HHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q psy2749           2 GLTHAKAK--EVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQ   79 (217)
Q Consensus         2 ~~~~~~~~--~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~   79 (217)
                      .+|+.+.+  ++...+. ++..+||+++|+.+|++.||+|+++..+..++|.+|+.+|++|+.++|++++++|++++.+.
T Consensus        22 ~~~~~~~~~~~~~~~~~-~~~~~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~  100 (917)
T COG0474          22 TWHPLSVERNELLLELF-TSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWV  100 (917)
T ss_pred             cccccccchhhHHHhhc-CCcccCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            34555677  8999998 88899999999999999999999999999999999999999999999999999999986322


Q ss_pred             ccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCch-hHHHHHHHHHHHHhhcccccccchHHHHHHHhccC
Q psy2749          80 ASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKL-YLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLV  158 (217)
Q Consensus        80 ~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~-~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~  158 (217)
                      .                                          . .++.+|+.++++|+.++++||+++++++++|+++.
T Consensus       101 ~------------------------------------------~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~  138 (917)
T COG0474         101 D------------------------------------------AGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMS  138 (917)
T ss_pred             c------------------------------------------cCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            1                                          1 56668899999999999999999999999999999


Q ss_pred             CceeEEeeecch----hhhhhhhhhhhh
Q psy2749         159 PQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       159 ~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +++++|+|||..    .+++++|||+.+
T Consensus       139 ~~~~~V~R~g~~~~i~a~eLVpGDiV~l  166 (917)
T COG0474         139 SPKAKVLRDGKFVEIPASELVPGDIVLL  166 (917)
T ss_pred             cCceEEEeCCcEEEecHHHCCCCcEEEE
Confidence            999999999986    469999998766

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus

Probab=99.71  E-value=3.7e-17  Score=113.20  Aligned_cols=62  Identities=32%  Similarity=0.528  Sum_probs=58.5

Q ss_pred             HcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2749          14 RDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAY   76 (217)
Q Consensus        14 ~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~   76 (217)
                      .++ ++++.|||++||++|+++||+|++++++++++|++++++|.|||+++|+++|++|++++
T Consensus         2 ~l~-~~~~~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~   63 (64)
T smart00831        2 RLQ-TSLESGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALLG   63 (64)
T ss_pred             CCC-CCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            467 88878999999999999999999999999999999999999999999999999999874

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.

>KOG0205|consensus

Probab=99.64  E-value=2.9e-16  Score=149.21  Aligned_cols=136  Identities=16%  Similarity=0.161  Sum_probs=117.8

Q ss_pred             cCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCC
Q psy2749           6 AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEE   85 (217)
Q Consensus         6 ~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~   85 (217)
                      .+.+++.+.|. .+ ..|||++|+++|+++||+|++.++| ++.+.+|+.-|.+|+.++.-.+|++...+.--    ++ 
T Consensus        21 ~p~eeVfeeL~-~t-~~GLt~~E~~eRlk~fG~NkleEkk-en~~lKFl~Fm~~PlswVMEaAAimA~~Lang----~~-   92 (942)
T KOG0205|consen   21 IPIEEVFEELL-CT-REGLTSDEVEERLKIFGPNKLEEKK-ESKFLKFLGFMWNPLSWVMEAAAIMAIGLANG----GG-   92 (942)
T ss_pred             CchhhhHHHHh-cC-CCCCchHHHHHHHHhhCchhhhhhh-hhHHHHHHHHHhchHHHHHHHHHHHHHHHhcC----CC-
Confidence            47899999998 55 4599999999999999999999755 67788999999999999999999998877411    11 


Q ss_pred             CCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe
Q psy2749          86 PADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ  165 (217)
Q Consensus        86 ~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi  165 (217)
                                                       ...+|.+...|...+++|+.++|+||+++..+.++|++-..++++|+
T Consensus        93 ---------------------------------~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVl  139 (942)
T KOG0205|consen   93 ---------------------------------RPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVL  139 (942)
T ss_pred             ---------------------------------CCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEe
Confidence                                             11369999999999999999999999999999999999999999999


Q ss_pred             eecchh----hhhhhhhhhhh
Q psy2749         166 SHVLIF----DLLWLGIALTF  182 (217)
Q Consensus       166 R~g~~~----~~l~lg~iL~~  182 (217)
                      |||+..    ..+|+||||-+
T Consensus       140 RDGkw~E~eAs~lVPGDIlsi  160 (942)
T KOG0205|consen  140 RDGKWSEQEASILVPGDILSI  160 (942)
T ss_pred             ecCeeeeeeccccccCceeee
Confidence            999863    48899998754

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=99.54  E-value=1.6e-14  Score=146.92  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=98.0

Q ss_pred             CCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccccccccc
Q psy2749          21 TRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCW  100 (217)
Q Consensus        21 ~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~  100 (217)
                      .+|||++|+++|+++||+|+++.|+ +++|+++++++.+||.+++++++++.+.-                         
T Consensus       137 ~~GLs~~e~~~r~~~yG~N~i~~~~-~s~~~ll~~~~~~p~~i~~i~~~~l~~~~-------------------------  190 (1054)
T TIGR01657       137 SNGLTTGDIAQRKAKYGKNEIEIPV-PSFLELLKEEVLHPFYVFQVFSVILWLLD-------------------------  190 (1054)
T ss_pred             ccCCCHHHHHHHHHhcCCCeeecCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhh-------------------------
Confidence            5799999999999999999999865 79999999999999999998875554321                         


Q ss_pred             chhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhh
Q psy2749         101 LFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWL  176 (217)
Q Consensus       101 ~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~l  176 (217)
                                          +.|+++++|+++++++..++++|++|+.+.++.+.. .+..++|+|||..    .+++++
T Consensus       191 --------------------~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~Rdg~~~~I~s~eLvp  249 (1054)
T TIGR01657       191 --------------------EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIRNGKWVTIASDELVP  249 (1054)
T ss_pred             --------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEECCEEEEEEcccCCC
Confidence                                138999999999999999999999998887766654 3568999999976    369999


Q ss_pred             hhhhhh
Q psy2749         177 GIALTF  182 (217)
Q Consensus       177 g~iL~~  182 (217)
                      |||+.+
T Consensus       250 GDiv~l  255 (1054)
T TIGR01657       250 GDIVSI  255 (1054)
T ss_pred             CCEEEE
Confidence            998766

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=99.19  E-value=2.1e-11  Score=122.81  Aligned_cols=95  Identities=12%  Similarity=0.132  Sum_probs=82.4

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHH
Q psy2749          53 FCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAV  132 (217)
Q Consensus        53 ~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~v  132 (217)
                      ++++|+||++++|+++|++|++++.+.+.    +                               ...++|+++++|+++
T Consensus         1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~----~-------------------------------~~~~~~~~~~~Il~v   45 (917)
T TIGR01116         1 VLEQFEDLLVRILLLAACVSFVLAWFEEG----E-------------------------------ETVTAFVEPFVILLI   45 (917)
T ss_pred             ChHHHhCHHHHHHHHHHHHHHHHhccccc----c-------------------------------cccccHhHHHHHHHH
Confidence            47899999999999999999999755320    0                               011369999999999


Q ss_pred             HHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749         133 VIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       133 v~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +++++.++++||+|+++.+++|+++.+++++|+|||..    .+++++||++.+
T Consensus        46 i~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRdg~~~~I~~~~Lv~GDiv~l   99 (917)
T TIGR01116        46 LVANAIVGVWQERNAEKAIEALKEYESEHAKVLRDGRWSVIKAKDLVPGDIVEL   99 (917)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEEHHHCCCCCEEEE
Confidence            99999999999999999999999999999999999975    469999999876

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>KOG0203|consensus

Probab=99.11  E-value=2e-11  Score=119.23  Aligned_cols=116  Identities=31%  Similarity=0.367  Sum_probs=97.6

Q ss_pred             cchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eec---------
Q psy2749         100 WLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHV---------  168 (217)
Q Consensus       100 ~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g---------  168 (217)
                      +.++|.+|++|+++||+|+.+.++..+.+ .-.+--++.+..-......++.+.++++.+-....+  ...         
T Consensus        36 ~~~~H~~~~~eL~~r~~t~~~~Glt~~~A-~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~  114 (1019)
T KOG0203|consen   36 SMDDHKLSVDELCERYGTSVSQGLTSQEA-AEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQ  114 (1019)
T ss_pred             eeccccCCHHHHHHHhcCChhhcccHHHH-HhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence            46789999999999999998877887777 677778999999999999999999998866432211  000         


Q ss_pred             ------chhhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         169 ------LIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       169 ------~~~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                            ...+|+|+|+||..||+++++|+|+|+.|+++.|+||++|+|++|.|.
T Consensus       115 ~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~Vi  168 (1019)
T KOG0203|consen  115 ASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVI  168 (1019)
T ss_pred             cccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheee
Confidence                  123699999999999999999999999999999999999999999874

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=98.61  E-value=2.1e-08  Score=102.52  Aligned_cols=115  Identities=14%  Similarity=0.053  Sum_probs=95.3

Q ss_pred             chhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch--hhhhhh
Q psy2749         101 LFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI--FDLLWL  176 (217)
Q Consensus       101 ~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~--~~~l~l  176 (217)
                      .+||.++.+++.++++|+...|+.+..+ -...-..|.+..-.+.+...+...++++.++...++  ....+  ..+...
T Consensus         5 ~~~~~~~~~~v~~~l~t~~~~GLs~~ea-~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~~~~~   83 (1053)
T TIGR01523         5 NAYFSDIADEAAEFIGTSIPEGLTHDEA-QHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMHDWIE   83 (1053)
T ss_pred             CchhhCCHHHHHHHhCcCcccCCCHHHH-HHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhHHH
Confidence            4689999999999999986556888776 788888999998777666677777888877766543  33333  247778


Q ss_pred             hhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         177 GIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       177 g~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      |++|++|+++|++++|+||+||+|+|+++++|.|++++|+
T Consensus        84 ~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~Vi  123 (1053)
T TIGR01523        84 GGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVI  123 (1053)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence            9999999999999999999999999999999999998875

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>KOG0208|consensus

Probab=98.57  E-value=1.1e-07  Score=94.60  Aligned_cols=116  Identities=15%  Similarity=0.140  Sum_probs=91.3

Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccc
Q psy2749          20 LTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCC   99 (217)
Q Consensus        20 ~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~   99 (217)
                      ..+||+..++.+|+..||+|.+.-+. +|.+.+++++..+||-+.-.+    |++++....                   
T Consensus       157 ~~~gL~~~~~~~r~~iyG~N~i~l~i-k~i~~iLv~EvL~PfYlFQ~f----Sv~lW~~d~-------------------  212 (1140)
T KOG0208|consen  157 VSNGLERQEIIDRRIIYGRNVISLPI-KSISQILVKEVLNPFYLFQAF----SVALWLADS-------------------  212 (1140)
T ss_pred             ccCCccHHHHHhHHhhcCCceeeeec-ccHHHHHHHhccchHHHHHhH----Hhhhhhccc-------------------
Confidence            36899999999999999999999865 789999999999999876544    455553221                   


Q ss_pred             cchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecchh----hhhh
Q psy2749         100 WLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIF----DLLW  175 (217)
Q Consensus       100 ~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~~----~~l~  175 (217)
                                           . ++-+..|.++.+.+...+.|+.++.++-++.+-+. ...++|+|+|...    +++|
T Consensus       213 ---------------------Y-~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~R~g~~~ti~S~eLV  269 (1140)
T KOG0208|consen  213 ---------------------Y-YYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVIRDGFWETVDSSELV  269 (1140)
T ss_pred             ---------------------c-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEECCEEEEEeccccc
Confidence                                 1 34466778888899999999999988866555444 2478999999863    5999


Q ss_pred             hhhhhhh
Q psy2749         176 LGIALTF  182 (217)
Q Consensus       176 lg~iL~~  182 (217)
                      +||||.+
T Consensus       270 PGDil~i  276 (1140)
T KOG0208|consen  270 PGDILYI  276 (1140)
T ss_pred             cccEEEE
Confidence            9999876

>KOG0202|consensus

Probab=98.47  E-value=3.9e-08  Score=96.62  Aligned_cols=113  Identities=19%  Similarity=0.134  Sum_probs=93.3

Q ss_pred             hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecchh--hhhhhhh
Q psy2749         103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLIF--DLLWLGI  178 (217)
Q Consensus       103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~~--~~l~lg~  178 (217)
                      .|..|.+|+...|.|+...++....+ .-.--..|.+.+--|....-+-.-|+|+.++-+.++  ....++  .+.-.+.
T Consensus         4 ~~~~~v~e~~~~f~t~~~~GLt~~ev-~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~~~e~~   82 (972)
T KOG0202|consen    4 AHAKSVSEVLAEFGTDLEEGLTSDEV-TRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLADFDEPF   82 (972)
T ss_pred             hhcCcHHHHHHHhCcCcccCCCHHHH-HHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccce
Confidence            46678999999999998888888877 778888999998888888888888888877766653  333342  2334677


Q ss_pred             hhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         179 ALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       179 iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      +|.+++++|++++|||||+|||+||+++++.|++|+|.
T Consensus        83 vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~  120 (972)
T KOG0202|consen   83 VITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVL  120 (972)
T ss_pred             eeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEE
Confidence            88889999999999999999999999999999999873

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=98.29  E-value=1.5e-06  Score=85.38  Aligned_cols=97  Identities=15%  Similarity=0.060  Sum_probs=73.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHH
Q psy2749          55 KQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVI  134 (217)
Q Consensus        55 ~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~  134 (217)
                      .+|+||+.++|++++++|++++++.....++.                               ....+|..++++++.++
T Consensus        29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~-------------------------------~~~~~~~i~~~l~~~vl   77 (679)
T PRK01122         29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGG-------------------------------PAGFNLAITLWLWFTVL   77 (679)
T ss_pred             HHhhChHHHHHHHHHHHHHHHHhhhhcccccc-------------------------------ccchHHHHHHHHHHHHH
Confidence            57899999999999999999875432100000                               00123667777777777


Q ss_pred             HHhhcccccccchHHHHHHHhccCCc-eeEEeeecc-h----hhhhhhhhhhhh
Q psy2749         135 VTGIFSYYQESKSSAIMDSFKNLVPQ-FRVTQSHVL-I----FDLLWLGIALTF  182 (217)
Q Consensus       135 i~~~i~~~qe~ka~k~~~~L~~~~~~-~~~ViR~g~-~----~~~l~lg~iL~~  182 (217)
                      +...+..+||+|+++.+++|+++.+. .++|+|+|. .    .++++.||++.+
T Consensus        78 ~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir~g~~~~~V~~~eL~~GDiV~v  131 (679)
T PRK01122         78 FANFAEALAEGRGKAQADSLRGAKKDTFARKLREPGAAEEVPATELRKGDIVLV  131 (679)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCEEEEEEHHHcCCCCEEEE
Confidence            77788889999999999999999885 799999876 2    468999998765

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=98.26  E-value=1.3e-06  Score=85.74  Aligned_cols=94  Identities=9%  Similarity=0.062  Sum_probs=73.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHH
Q psy2749          55 KQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVI  134 (217)
Q Consensus        55 ~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~  134 (217)
                      .+++||+.++|++++++|++++.+....+                                  .....++.+++|+++++
T Consensus        28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~----------------------------------~~~~~~~~~~~i~~~l~   73 (673)
T PRK14010         28 YMIKNPIMFVVEVGMLLALGLTIYPDLFH----------------------------------QESVSRLYVFSIFIILL   73 (673)
T ss_pred             HHHHChHHHHHHHHHHHHHHHHHHhhhcc----------------------------------cccccchhHHHHHHHHH
Confidence            46789999999999999999875421000                                  00012477888899999


Q ss_pred             HHhhccccc----ccchHHHHHHHhccCCc-eeE-Eeeecch----hhhhhhhhhhhh
Q psy2749         135 VTGIFSYYQ----ESKSSAIMDSFKNLVPQ-FRV-TQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       135 i~~~i~~~q----e~ka~k~~~~L~~~~~~-~~~-ViR~g~~----~~~l~lg~iL~~  182 (217)
                      ++++++.+|    |+|+++++++|+++.++ +++ |+|||..    .++++.||++..
T Consensus        74 ~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~rdg~~~~I~a~eLv~GDiV~v  131 (673)
T PRK14010         74 LTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQDGSYEMIDASDLKKGHIVRV  131 (673)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeCCEEEEEEHHHcCCCCEEEE
Confidence            999999999    68999999999999886 776 6799864    469999998765

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=98.07  E-value=2.7e-06  Score=86.92  Aligned_cols=117  Identities=32%  Similarity=0.393  Sum_probs=93.7

Q ss_pred             ccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch------
Q psy2749          99 CWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI------  170 (217)
Q Consensus        99 ~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~------  170 (217)
                      ...++|.+|.+++..+++|+...|+.+.-+ -...-..|.+..-.+.+...+...++++.++...++  ....+      
T Consensus        13 ~~~~~~~~~~~~~~~~l~t~~~~GLs~~e~-~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~   91 (997)
T TIGR01106        13 VEMDDHKLSLDELERKYGTDLSKGLSAARA-AEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGI   91 (997)
T ss_pred             ccCCchhCCHHHHHHHhCcCcccCCCHHHH-HHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            345789999999999999987656888876 788888999988776666666677788777654332  11111      


Q ss_pred             ---------hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         171 ---------FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       171 ---------~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                               ..+++.|+++++|+++|++++|+|++|+++.+++++++.|++++|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~Vi  146 (997)
T TIGR01106        92 QASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVI  146 (997)
T ss_pred             hhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence                     1367889999999999999999999999999999999999988764

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=98.00  E-value=1.2e-05  Score=78.93  Aligned_cols=96  Identities=20%  Similarity=0.171  Sum_probs=68.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHH---HHHHH
Q psy2749          55 KQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLG---IVLTA  131 (217)
Q Consensus        55 ~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~---i~I~~  131 (217)
                      .||+||++++|+++|++|+++++.....+.+                                .....|+++   +++++
T Consensus        28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~--------------------------------~~~~~~~~~~i~~~l~~   75 (675)
T TIGR01497        28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMP--------------------------------GNNLALFNAIITGILFI   75 (675)
T ss_pred             HHhhChHHHHHHHHHHHHHHHHHhhhccccc--------------------------------cccccchHHHHHHHHHH
Confidence            4789999999999999999987542100000                                000136654   34455


Q ss_pred             HHHHHhhcccccccchHHHHHHHhccCCc-eeEEee-ecch----hhhhhhhhhhhh
Q psy2749         132 VVIVTGIFSYYQESKSSAIMDSFKNLVPQ-FRVTQS-HVLI----FDLLWLGIALTF  182 (217)
Q Consensus       132 vv~i~~~i~~~qe~ka~k~~~~L~~~~~~-~~~ViR-~g~~----~~~l~lg~iL~~  182 (217)
                      .+++...+..++|+|+++.+++|+++.++ .++|+| +|..    .++++.||++..
T Consensus        76 ~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~~~~V~~~~L~~GDiV~V  132 (675)
T TIGR01497        76 TVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRDDGAIDKVPADQLKKGDIVLV  132 (675)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeCCEEEEEEHHHCCCCCEEEE
Confidence            55666667779999999999999999876 588986 7753    468999998765

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=97.93  E-value=5.1e-06  Score=84.10  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=89.8

Q ss_pred             hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch--hhhhhhhh
Q psy2749         103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI--FDLLWLGI  178 (217)
Q Consensus       103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~--~~~l~lg~  178 (217)
                      .+.++.+++.++++++.. ++.+..+ -...-..|.+..-.+.+...+...++++.++...++  ....+  .++.+.|+
T Consensus        49 ~~~~~~~~v~~~l~~~~~-GLs~~ea-~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~~~~~a~  126 (902)
T PRK10517         49 AAVMPEEELWKTFDTHPE-GLNEAEV-ESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLFAAG  126 (902)
T ss_pred             HHcCCHHHHHHHhCCCCC-CCCHHHH-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHccHHHHH
Confidence            455688999999998875 4888777 788888999998777666666667778877765543  23333  25778889


Q ss_pred             hhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         179 ALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       179 iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      +|++++++|++++|+||+||++.++++++|.|++++|.
T Consensus       127 ~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi  164 (902)
T PRK10517        127 VIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL  164 (902)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            99999999999999999999999999999999998774

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=97.91  E-value=6.6e-06  Score=83.28  Aligned_cols=112  Identities=21%  Similarity=0.191  Sum_probs=86.6

Q ss_pred             hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecchh---------
Q psy2749         103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLIF---------  171 (217)
Q Consensus       103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~~---------  171 (217)
                      .|+.|.+++...+.++.. ++.+..+ -......|.+..-.+.+...+...++++.++...++  ....+.         
T Consensus        27 ~~~~~~~~v~~~l~~~~~-GLs~~ea-~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~  104 (903)
T PRK15122         27 EAANSLEETLANLNTHRQ-GLTEEDA-AERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLR  104 (903)
T ss_pred             HHhCCHHHHHHHhCCCCC-CCCHHHH-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            467788999999998854 4877776 778888899988766666566666777777665442  222221         


Q ss_pred             ----hhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         172 ----DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       172 ----~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                          .+...+++|++++++|++++|+||++++++++++++|+|.+++|.
T Consensus       105 ~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~  153 (903)
T PRK15122        105 RGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL  153 (903)
T ss_pred             CCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE
Confidence                145678899999999999999999999999999999999998764

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=97.86  E-value=8.5e-06  Score=82.17  Aligned_cols=114  Identities=18%  Similarity=0.113  Sum_probs=90.1

Q ss_pred             chhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch--hhhhhh
Q psy2749         101 LFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI--FDLLWL  176 (217)
Q Consensus       101 ~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~--~~~l~l  176 (217)
                      ...|.++.+++..+++++.. ++.+..+ -...-..|.+..-.+.+.......++++.++...++  ....+  .++.+.
T Consensus        13 ~~~~~~~~~~~~~~l~~~~~-GLs~~ev-~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~~~~~   90 (867)
T TIGR01524        13 LKESQMGKETLLRKLGVHET-GLTNVEV-TERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEA   90 (867)
T ss_pred             HHHHhCCHHHHHHHhCCCCC-CCCHHHH-HHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH
Confidence            35677899999999998865 4877776 788888999988666555556667777777665443  22332  257788


Q ss_pred             hhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         177 GIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       177 g~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      +++|++++++|++++|+||+|++++++++++|+|.+++|.
T Consensus        91 ~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~  130 (867)
T TIGR01524        91 TVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVL  130 (867)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEE
Confidence            9999999999999999999999999999999999988763

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=97.84  E-value=1e-05  Score=81.79  Aligned_cols=114  Identities=15%  Similarity=0.117  Sum_probs=89.3

Q ss_pred             hhhhhhHHHHHHhhhcccCCchh-HHHHHHHHHHHHhhcccccccchHHHHHHHhcc-CCceeEEe--eecch--hhhhh
Q psy2749         102 FRHAISLVKARAVLNTSKKGKLY-LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNL-VPQFRVTQ--SHVLI--FDLLW  175 (217)
Q Consensus       102 ~~h~~s~~~~~~~~~t~~~~~~~-~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~-~~~~~~Vi--R~g~~--~~~l~  175 (217)
                      .||.+|.+++.+++.|+...|+. +..+ --..-..|.+.+-.+.+...+...++++ .++...++  ....+  ..+.+
T Consensus         3 ~~~~~~~~~v~~~l~t~~~~GLs~~~ev-~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g~~~   81 (884)
T TIGR01522         3 QYCELSVEETCSKLQTDLQNGLNSSQEA-SHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNID   81 (884)
T ss_pred             chhhCCHHHHHHHhCcCcccCCCcHHHH-HHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHcchh
Confidence            57999999999999998765687 6655 6777789999987776666666677777 56655442  22222  23566


Q ss_pred             hhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         176 LGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       176 lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      .|.+++++++++++++|+||+++++.+++++++.|++++|.
T Consensus        82 ~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~Vi  122 (884)
T TIGR01522        82 DAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLI  122 (884)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence            77888888999999999999999999999999999998763

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=97.70  E-value=5.1e-05  Score=72.64  Aligned_cols=61  Identities=11%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             chhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749         122 KLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       122 ~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +|.++.+|+.+++++..++++|++|+.+.++.|.++.+++++|+|+|..    .++++.||++.+
T Consensus        17 ~~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDiv~v   81 (536)
T TIGR01512        17 EYLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEELKVGDVVVV   81 (536)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHCCCCCEEEE
Confidence            3888999999999999999999999999999999999999999999975    469999998766

.

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=97.37  E-value=0.00025  Score=73.03  Aligned_cols=104  Identities=14%  Similarity=0.008  Sum_probs=76.4

Q ss_pred             cCCCCCCCCCCCCH---HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHH
Q psy2749          36 DGPNALTPPKQTPE---WIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKAR  112 (217)
Q Consensus        36 ~G~N~l~~~k~~s~---~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~  112 (217)
                      |..|.+...|-+.|   ++.+++||..+.++.++++++++++.... +                                
T Consensus         1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s-~--------------------------------   47 (1057)
T TIGR01652         1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILS-P--------------------------------   47 (1057)
T ss_pred             CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcC-C--------------------------------
Confidence            56799988887666   68999999999999999999999874321 0                                


Q ss_pred             HhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeee-cch----hhhhhhhhhhhh
Q psy2749         113 AVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSH-VLI----FDLLWLGIALTF  182 (217)
Q Consensus       113 ~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~-g~~----~~~l~lg~iL~~  182 (217)
                             ...+...+.+.++++++.+-.++++++..++-+.+   .+..++|+|+ |..    .+++++||++..
T Consensus        48 -------~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~---n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l  112 (1057)
T TIGR01652        48 -------TYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEV---NNRLTEVLEGHGQFVEIPWKDLRVGDIVKV  112 (1057)
T ss_pred             -------CCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHH---hCcEEEEECCCCcEEEeeeecccCCCEEEE
Confidence                   01122233344555588889999999998877654   3578999996 543    358888988766

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.26  E-value=8.9e-05  Score=75.31  Aligned_cols=115  Identities=20%  Similarity=0.139  Sum_probs=86.2

Q ss_pred             chhhhhhHH--HHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeec--ch--hhhh
Q psy2749         101 LFRHAISLV--KARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHV--LI--FDLL  174 (217)
Q Consensus       101 ~~~h~~s~~--~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g--~~--~~~l  174 (217)
                      ..+|..+++  +....+.++...++.+..+ .-..-..+.+.+..+.+..-....++++.++...++-..  .+  ....
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~-~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~   99 (917)
T COG0474          21 ETWHPLSVERNELLLELFTSPTTGLSEEEV-KRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDW   99 (917)
T ss_pred             ccccccccchhhHHHhhcCCcccCCCHHHH-HHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            356777777  8888887776655777544 666778899998767666777777788776665554222  11  1233


Q ss_pred             ----hhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         175 ----WLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       175 ----~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                          +..+++.+++++|++++|+||++|++.++++++|.+.+++|.
T Consensus       100 ~~~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~  145 (917)
T COG0474         100 VDAGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVL  145 (917)
T ss_pred             cccCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE
Confidence                556689999999999999999999999999999999988774

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=97.18  E-value=0.00054  Score=65.83  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeec-ch----hhhhhhhhhhhh
Q psy2749         123 LYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHV-LI----FDLLWLGIALTF  182 (217)
Q Consensus       123 ~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g-~~----~~~l~lg~iL~~  182 (217)
                      |.++..|+.+++++..+.+++++|+.+.++.|.+..++.++|+|+| ..    .++++.||++.+
T Consensus        18 ~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v   82 (556)
T TIGR01525        18 VLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIV   82 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEE
Confidence            7888999999999999999999999999999999999999999996 43    469999998776

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.06  E-value=0.0011  Score=65.99  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             CchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749         121 GKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       121 ~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +.|.++..++..+.+...+..++++|+.+.+++|.++.++.++|+|+|..    .+++..||++.+
T Consensus       204 ~~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l~~GDiv~v  269 (741)
T PRK11033        204 GATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGEREEVAIADLRPGDVIEV  269 (741)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHCCCCCEEEE
Confidence            45788888888999999999999999999999999999999999999975    469999998775

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=96.81  E-value=0.001  Score=67.67  Aligned_cols=46  Identities=11%  Similarity=0.186  Sum_probs=42.4

Q ss_pred             hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         171 FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       171 ~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      ..+.+.|.+|++|+++|+++++||++|+++.+++++++.|.+++|.
T Consensus        33 ~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~Vi   78 (917)
T TIGR01116        33 VTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL   78 (917)
T ss_pred             cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence            3477899999999999999999999999999999999999988764

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.76  E-value=0.00095  Score=56.26  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhhcccccccchHHHHHHHhccCCce-eEEeeecch----hhhhhhhhhhhh
Q psy2749         128 VLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF-RVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       128 ~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~-~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +|+++++++..+++++++|+.+..+.++++.++. ++|+|+|..    .+++++||++.+
T Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l   60 (230)
T PF00122_consen    1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIIL   60 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEE
T ss_pred             CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeec
Confidence            3577888999999999999999999999988887 999999875    469999999876

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=96.31  E-value=0.0015  Score=65.11  Aligned_cols=68  Identities=7%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             HHHHHHhccCCceeEEe--eecch--hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         149 AIMDSFKNLVPQFRVTQ--SHVLI--FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       149 k~~~~L~~~~~~~~~Vi--R~g~~--~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      .+...++++.++...++  ....+  ..+.+.|.++++++++|+.++|+||+++++.++++++++|++++|.
T Consensus        26 ~~~~~~~~~~~~~~~lL~~aa~~s~~~~~~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~   97 (755)
T TIGR01647        26 PLLKFLGFFWNPLSWVMEAAAIIAIALENWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVL   97 (755)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHhhcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            34445566655554332  12222  1356678899999999999999999999999999999999998873

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=96.11  E-value=0.0048  Score=63.01  Aligned_cols=108  Identities=12%  Similarity=0.003  Sum_probs=71.7

Q ss_pred             hHHHHHHhhhcccCCchh--HHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch------------
Q psy2749         107 SLVKARAVLNTSKKGKLY--LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI------------  170 (217)
Q Consensus       107 s~~~~~~~~~t~~~~~~~--~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~------------  170 (217)
                      ++++++.+++|+...|+.  +..+ -...-..|.+.+-+..+..-....++++.++...++  ..+.+            
T Consensus        43 ~~~~~~~~l~t~~~~GLs~~~~ev-~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~  121 (941)
T TIGR01517        43 GAEGIATKLKTDLNEGVRLSSSTL-ERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGK  121 (941)
T ss_pred             CHHHHHHHhCcCcccCCCCCHHHH-HHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhccccccc
Confidence            456677777777554576  5555 566667777776655554434444555544432221  11111            


Q ss_pred             ---hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhc-CCCCCCC
Q psy2749         171 ---FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNM-VPQVSPG  215 (217)
Q Consensus       171 ---~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m-~p~~~~~  215 (217)
                         ..+.+.|.+++++++++.+++++|++++++.++.++++ .+.+++|
T Consensus       122 ~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~V  170 (941)
T TIGR01517       122 ADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAV  170 (941)
T ss_pred             CccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEE
Confidence               12677889999999999999999999999999999875 4666655

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>KOG0209|consensus

Probab=93.52  E-value=0.18  Score=50.83  Aligned_cols=122  Identities=11%  Similarity=0.063  Sum_probs=76.5

Q ss_pred             HHHHHHHcCCCCCCCCCCH-HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy2749           8 AKEVLERDGPNALTRGLTH-AKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEP   86 (217)
Q Consensus         8 ~~~l~~~l~~t~~~~GLt~-~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~   86 (217)
                      .++.+..+. .  .+|+.. ++++.-.++||.|...-+. ++|-.+|.+....||...-.++..    ++...+      
T Consensus       150 ~~~~~g~~~-k--~~G~~~~~~i~~a~~~~G~N~fdi~v-PtF~eLFkE~A~aPfFVFQVFcvg----LWCLDe------  215 (1160)
T KOG0209|consen  150 TDEPFGYFQ-K--STGHEEESEIKLAKHKYGKNKFDIVV-PTFSELFKEHAVAPFFVFQVFCVG----LWCLDE------  215 (1160)
T ss_pred             cCCcchhhh-h--ccCcchHHHHHHHHHHhcCCccccCC-ccHHHHHHHhccCceeeHhHHhHH----HHHhHH------
Confidence            344444444 2  367773 4445555569999998664 569999999999998877666543    432211      


Q ss_pred             CCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHH-HhhcccccccchHHHHHHHhccCCc--eeE
Q psy2749          87 ADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIV-TGIFSYYQESKSSAIMDSFKNLVPQ--FRV  163 (217)
Q Consensus        87 ~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i-~~~i~~~qe~ka~k~~~~L~~~~~~--~~~  163 (217)
                                                         -||-+..-+.|++. -+.+ .+|   .-+.+..++.|-..  .+.
T Consensus       216 -----------------------------------yWYySlFtLfMli~fE~tl-V~Q---rm~~lse~R~Mg~kpy~I~  256 (1160)
T KOG0209|consen  216 -----------------------------------YWYYSLFTLFMLIAFEATL-VKQ---RMRTLSEFRTMGNKPYTIN  256 (1160)
T ss_pred             -----------------------------------HHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHhcCCCceEEE
Confidence                                               16666554444433 2222 223   34567788888653  678


Q ss_pred             Eeeecch----hhhhhhhhhhhh
Q psy2749         164 TQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       164 ViR~g~~----~~~l~lg~iL~~  182 (217)
                      |.|+++.    .+++++||+.-+
T Consensus       257 v~R~kKW~~l~seeLlPgDvVSI  279 (1160)
T KOG0209|consen  257 VYRNKKWVKLMSEELLPGDVVSI  279 (1160)
T ss_pred             EEecCcceeccccccCCCceEEe
Confidence            8999886    368999997544

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=92.04  E-value=0.45  Score=46.06  Aligned_cols=60  Identities=10%  Similarity=0.159  Sum_probs=44.8

Q ss_pred             hhHHHHH-HHHHHHHhhcccccccchHHHHHHHhccCCceeEEeee-cc----hhhhhhhhhhhhh
Q psy2749         123 LYLGIVL-TAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSH-VL----IFDLLWLGIALTF  182 (217)
Q Consensus       123 ~~~~i~I-~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~-g~----~~~~l~lg~iL~~  182 (217)
                      |+++.++ +..+.+.-.+..+.++|+.+.+++|.++.+..++|+|+ |.    ..+++..||++..
T Consensus        53 ~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v  118 (562)
T TIGR01511        53 FFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKV  118 (562)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEE
Confidence            5665554 33444444677778889999999999999999999985 43    2468999998876

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>KOG0205|consensus

Probab=92.00  E-value=0.082  Score=52.03  Aligned_cols=109  Identities=13%  Similarity=0.049  Sum_probs=82.8

Q ss_pred             hhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEE----------eeecch-hh
Q psy2749         104 HAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVT----------QSHVLI-FD  172 (217)
Q Consensus       104 h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~V----------iR~g~~-~~  172 (217)
                      -+++.|++.+.+-.+..| +....+ --+..+.+.+.. .|.+..+.++.|-=|.+|-..|          +|+|.- ..
T Consensus        19 ~~~p~eeVfeeL~~t~~G-Lt~~E~-~eRlk~fG~Nkl-eEkken~~lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~   95 (942)
T KOG0205|consen   19 EAIPIEEVFEELLCTREG-LTSDEV-EERLKIFGPNKL-EEKKESKFLKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPP   95 (942)
T ss_pred             ccCchhhhHHHHhcCCCC-CchHHH-HHHHHhhCchhh-hhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCc
Confidence            356778888888887764 887777 788888999887 5888888888888887775544          343332 12


Q ss_pred             hhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q psy2749         173 LLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPG  215 (217)
Q Consensus       173 ~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~  215 (217)
                      +.+.-..|....++|++++|+||+.|..+.++++.=+..+++|
T Consensus        96 DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakV  138 (942)
T KOG0205|consen   96 DWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKV  138 (942)
T ss_pred             chhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEE
Confidence            4444445556678899999999999999999999888888776

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.74  E-value=0.15  Score=35.28  Aligned_cols=58  Identities=22%  Similarity=0.072  Sum_probs=47.2

Q ss_pred             hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCce
Q psy2749         103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF  161 (217)
Q Consensus       103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~  161 (217)
                      ||.+|.++++.+++|+...|+.+..+ ....-..|.+.+-.+.+..-....++++.++.
T Consensus         1 w~~~~~~~v~~~l~t~~~~GLs~~ev-~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~   58 (69)
T PF00690_consen    1 WHQLSVEEVLKRLNTSSSQGLSSEEV-EERRKKYGPNELPEPKKKSLWRIFLKQFKNPF   58 (69)
T ss_dssp             -TTSSHHHHHHHHTTBTSSBBTHHHH-HHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHH
T ss_pred             CCCCCHHHHHHHHCcCCCCCCCHHHH-HHHHHhcccccccccccCcHHHHHHHHHHhHH
Confidence            68899999999999887777988877 78888999999877777777777777775544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=91.06  E-value=0.14  Score=50.83  Aligned_cols=42  Identities=7%  Similarity=0.173  Sum_probs=36.5

Q ss_pred             hhhhhhhhhhhhhhhchhhhhh----hhhHHHHHHHHhhcCCC-CCC
Q psy2749         173 LLWLGIALTFVNVITGLFSYYQ----ENKSSRIMESFKNMVPQ-VSP  214 (217)
Q Consensus       173 ~l~lg~iL~~Vv~~~~~~~~~Q----~~~ae~~m~~~~~m~p~-~~~  214 (217)
                      ..+.+.++++++++|.+|++||    |+|+++.+++++++.|+ +++
T Consensus        61 ~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~  107 (673)
T PRK14010         61 SRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKAR  107 (673)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence            4567888899999999999999    68999999999999997 564

>PRK10671 copA copper exporting ATPase; Provisional

Probab=90.14  E-value=0.76  Score=46.49  Aligned_cols=60  Identities=12%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             hhH-HHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749         123 LYL-GIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       123 ~~~-~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      |++ +..++..+.+.-.+..+.+.|+.+.+++|.++.+..++|+|+|..    .+++..||++.+
T Consensus       285 ~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l~~GD~v~v  349 (834)
T PRK10671        285 YYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRL  349 (834)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHcCCCCEEEE
Confidence            445 445455555666677777788889999999999999999998864    468999998776

>PLN03190 aminophospholipid translocase; Provisional

Probab=89.22  E-value=0.69  Score=48.73  Aligned_cols=105  Identities=11%  Similarity=0.053  Sum_probs=72.9

Q ss_pred             hcCCCCCCCCCCCC--HH-HHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHH
Q psy2749          35 RDGPNALTPPKQTP--EW-IKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKA  111 (217)
Q Consensus        35 ~~G~N~l~~~k~~s--~~-~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~  111 (217)
                      +|..|.+...|-+-  |+ +.+++||.-+.++-.++.+++.++-.+. +                               
T Consensus        86 ~f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s-~-------------------------------  133 (1178)
T PLN03190         86 EFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLA-V-------------------------------  133 (1178)
T ss_pred             cCCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcc-c-------------------------------
Confidence            57888888766542  22 5667999999999999999988653211 0                               


Q ss_pred             HHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749         112 RAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       112 ~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                              .+.+...+-+.++++++.+-..+++++..+.-+...   +..++|+|+|..    .+++.+||++.+
T Consensus       134 --------~~~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N---~~~~~v~~~~~~~~i~~~~i~vGDiv~v  197 (1178)
T PLN03190        134 --------FGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN---NRLAWVLVDDQFQEKKWKDIRVGEIIKI  197 (1178)
T ss_pred             --------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc---CcEEEEEECCeEEEEeHHHCCCCCEEEE
Confidence                    012344445566666777777888888877766554   468999998864    358889988766

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=88.93  E-value=0.13  Score=48.75  Aligned_cols=52  Identities=12%  Similarity=0.085  Sum_probs=43.5

Q ss_pred             HHHHHHhhcccccccchHHHHHHHhc--cCCceeEEeeecc---hhhhhhhhhhhhh
Q psy2749         131 AVVIVTGIFSYYQESKSSAIMDSFKN--LVPQFRVTQSHVL---IFDLLWLGIALTF  182 (217)
Q Consensus       131 ~vv~i~~~i~~~qe~ka~k~~~~L~~--~~~~~~~ViR~g~---~~~~l~lg~iL~~  182 (217)
                      .+++++..+..++++++++.++.|++  ..+..++|+|+|.   +.+++.+||++.+
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g~~~V~~~~l~~GDiv~v   60 (499)
T TIGR01494         4 ILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNGWKEIPASDLVPGDIVLV   60 (499)
T ss_pred             EhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECCeEEEEHHHCCCCCEEEE
Confidence            45667788889999999999999998  7778999999982   2469999998776

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=87.58  E-value=0.34  Score=46.53  Aligned_cols=43  Identities=14%  Similarity=0.251  Sum_probs=37.8

Q ss_pred             hhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         174 LWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       174 l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      .+.+.+++++++++..++++|++|+++.+++++++.|+++.|.
T Consensus        18 ~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~   60 (536)
T TIGR01512        18 YLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL   60 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            3566777888899999999999999999999999999988764

.

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=86.30  E-value=0.45  Score=47.26  Aligned_cols=44  Identities=11%  Similarity=0.089  Sum_probs=38.1

Q ss_pred             hhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCC-CCCC
Q psy2749         172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ-VSPG  215 (217)
Q Consensus       172 ~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~-~~~~  215 (217)
                      ...+.+.+|++.+++..++.++|++|+++.+++++++.|+ .++|
T Consensus        64 ~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~v  108 (679)
T PRK01122         64 FNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARK  108 (679)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            4777888888888888888899999999999999999996 4655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2zxe_A	1028	Crystal Structure Of The Sodium - Potassium Pump In		5e-45
2zxe_A	1028	Crystal Structure Of The Sodium - Potassium Pump In		1e-10
3n23_A	992	Crystal Structure Of The High Affinity Complex Betw		6e-44
3n23_A	992	Crystal Structure Of The High Affinity Complex Betw		1e-10
3b8e_A	998	Crystal Structure Of The Sodium-Potassium Pump Leng		7e-44
3b8e_A	998	Crystal Structure Of The Sodium-Potassium Pump Leng		1e-10
3ixz_A	1034	Pig Gastric H+K+-Atpase Complexed With Aluminium Fl		2e-28
3ixz_A	1034	Pig Gastric H+K+-Atpase Complexed With Aluminium Fl		4e-07
1bg5_A	254	Crystal Structure Of The Ankyrin Binding Domain Of		1e-04

>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028

Iteration: 1
 Score =  177 bits (448), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 101/141 (71%), Gaps = 32/141 (22%)
Query: 20  LTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQ 79
           LTRGLT+A+AKE+L RDGPN+LTPP  TPEWIKFC+QLFGGF++LLWIGAILCF+AY IQ
Sbjct: 64  LTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQ 123
Query: 80  ASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIF 139
           A+T +EPA+DN                                LYLG+VL+ VVIVTG F
Sbjct: 124 AATEDEPANDN--------------------------------LYLGVVLSTVVIVTGCF 151
Query: 140 SYYQESKSSAIMDSFKNLVPQ 160
           SYYQE+KSS IMDSFKN+VPQ
Sbjct: 152 SYYQEAKSSRIMDSFKNMVPQ 172

>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
           D L+LG+ L+ V ++TG FSYYQE KSSRIM+SFKNMVPQ
Sbjct: 133 DNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQ 172

>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992

Iteration: 1
 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 104/156 (66%), Gaps = 32/156 (20%)
Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 13  HKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 72
Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQA+T EEP +DN                                LY
Sbjct: 73  LWIGAILCFLAYGIQAATEEEPQNDN--------------------------------LY 100
Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 101 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 136

>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
           D L+LG+ L+ V +ITG FSYYQE KSS+IMESFKNMVPQ
Sbjct: 97  DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 136

>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998

Iteration: 1
 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 104/156 (66%), Gaps = 32/156 (20%)
Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  + + L R     L+RGLT A+A E+L RDGPNALTPP  TPEW+KFC+QLFGGF++L
Sbjct: 19  HKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 78
Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           LWIGAILCF+AY IQA+T EEP +DN                                LY
Sbjct: 79  LWIGAILCFLAYGIQAATEEEPQNDN--------------------------------LY 106
Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
           LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 107 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 142

>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
           D L+LG+ L+ V +ITG FSYYQE KSS+IMESFKNMVPQ
Sbjct: 103 DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 142

>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 96/182 (52%), Gaps = 42/182 (23%)
Query: 5   HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
           H  +   LE+    + T+GL+ + A E+L RDGPNAL PP+ TPE++KF +QL GG   L
Sbjct: 54  HQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCL 113
Query: 65  LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
           +W+ A +C IA+ IQAS  +   DDNL                                Y
Sbjct: 114 MWVAAAICLIAFAIQASEGDLTTDDNL--------------------------------Y 141
Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ----------FRVTQSHVLIFDLL 174
           L + L AVV+VTG F YYQE KS+ I+ SFKNLVPQ          F++    +++ DL+
Sbjct: 142 LALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLV 201
Query: 175 WL 176
            +
Sbjct: 202 EM 203

>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
           D L+L +AL  V V+TG F YYQE KS+ I+ SFKN+VPQ
Sbjct: 138 DNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ 177

>pdb|1BG5|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Alpha-Na, K-Atpase As A Fusion Protein With Glutathione S-Transferase Length = 254

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 191 SYYQENKSSRIMESFKNMVPQ 211
           SYYQE KSS+IMESFKNMVPQ
Sbjct: 227 SYYQEAKSSKIMESFKNMVPQ 247

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	6e-42
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	1e-11
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	8e-42
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	2e-11
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	3e-11
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	7e-09
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	1e-08

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score =  150 bits (380), Expect = 6e-42
 Identities = 90/162 (55%), Positives = 110/162 (67%), Gaps = 37/162 (22%)

Query: 8   AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67
             E+  + G + LTRGLT+A+AKE+L RDGPN+LTPP  TPEWIKFC+QLFGGF++LLWI
Sbjct: 53  LDELHNKYGTD-LTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWI 111

Query: 68  GAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGI 127
           GAILCF+AY IQA+T +EPA+DN                                LYLG+
Sbjct: 112 GAILCFLAYGIQAATEDEPANDN--------------------------------LYLGV 139

Query: 128 VLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVL 169
           VL+ VVIVTG FSYYQE+KSS IMDSFKN+VPQ    Q+ V+
Sbjct: 140 VLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQ----QALVI 177

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
           D L+LG+ L+ V ++TG FSYYQE KSSRIM+SFKNMVPQ
Sbjct: 133 DNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQ 172

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score =  149 bits (379), Expect = 8e-42
 Identities = 67/162 (41%), Positives = 90/162 (55%), Gaps = 37/162 (22%)

Query: 8   AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67
             E+ ++   +A T+GL+ + A E+L RDGPNAL PP+ TPE++KF +QL GG   L+W+
Sbjct: 58  VAELEQKYQTSA-TKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWV 116

Query: 68  GAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGI 127
            A +C IA+ IQAS  +   DDN                                LYL +
Sbjct: 117 AAAICLIAFAIQASEGDLTTDDN--------------------------------LYLAL 144

Query: 128 VLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVL 169
            L AVV+VTG F YYQE KS+ I+ SFKNLVPQ    Q+ V+
Sbjct: 145 ALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ----QATVI 182

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 170 IFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
             D L+L +AL  V V+TG F YYQE KS+ I+ SFKN+VPQ
Sbjct: 136 TDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ 177

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 41/166 (24%)

Query: 5   HAK-AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFAL 63
           H+K  +E L   G +  T GLT  + K  LE+ G N L   +    W    +Q       
Sbjct: 6   HSKSTEECLAYFGVS-ETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 64

Query: 64  LLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKL 123
           +L + A                                    IS V A            
Sbjct: 65  ILLLAAC-----------------------------------ISFVLAWFEEGEETITAF 89

Query: 124 YLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVL 169
               V+  ++I   I   +QE  +   +++ K   P        V 
Sbjct: 90  VEPFVILLILIANAIVGVWQERNAENAIEALKEYEP----EMGKVY 131

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 14/136 (10%), Positives = 42/136 (30%), Gaps = 39/136 (28%)

Query: 23  GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
           GLT  + ++ ++  GPN L   K++   +KF   ++   + ++ + AI+           
Sbjct: 32  GLTTQEGEDRIQIFGPNKLEEKKESK-LLKFLGFMWNPLSWVMEMAAIMAIALANGDGRP 90

Query: 83  VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
            +                                          + +  ++++    S+ 
Sbjct: 91  PDWQD--------------------------------------FVGIICLLVINSTISFI 112

Query: 143 QESKSSAIMDSFKNLV 158
           +E+ +     +    +
Sbjct: 113 EENNAGNAAAALMAGL 128

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 50/157 (31%)

Query: 2   GLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGF 61
           G      +++L+ D       GLT  +  +   + G N +   K+   ++KF     G  
Sbjct: 70  GGGRVVPEDMLQTDTRV----GLTSEEVVQRRRKYGLNQMKEEKENH-FLKFLGFFVGPI 124

Query: 62  ALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKG 121
             ++   A+L           +E+  D                                 
Sbjct: 125 QFVMEGAAVLAAG--------LEDWVD--------------------------------- 143

Query: 122 KLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLV 158
                 V+  ++++  +  + QE ++ +I+D  K  +
Sbjct: 144 ----FGVICGLLLLNAVVGFVQEFQAGSIVDELKKTL 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.91
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.89
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.88
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.78
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	99.76
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	98.6
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	98.19
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	97.79
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	97.59
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	97.02
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	95.14
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	94.71
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	94.15
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	92.35
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	92.11
2kij_A	124	Copper-transporting ATPase 1; actuator, menkes dis	91.75
2hc8_A	113	PACS, cation-transporting ATPase, P-type; copper,	87.68

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.91  E-value=1.9e-24  Score=217.03  Aligned_cols=148  Identities=43%  Similarity=0.686  Sum_probs=129.1

Q ss_pred             cccccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcc
Q psy2749           2 GLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAS   81 (217)
Q Consensus         2 ~~~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~   81 (217)
                      .+|..+.+|++++|+ |++.+|||++||++|+++||+|++++++++|+|++|++||++||.++|+++|++|++++.+...
T Consensus        52 ~~~~~~~~~~~~~l~-~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~  130 (1034)
T 3ixz_A           52 NDHQLSVAELEQKYQ-TSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQAS  130 (1034)
T ss_pred             chhhCCHHHHHHHhC-CCcccCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhc
Confidence            344469999999999 9988999999999999999999999999999999999999999999999999999988755421


Q ss_pred             CCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCce
Q psy2749          82 TVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF  161 (217)
Q Consensus        82 ~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~  161 (217)
                      .++.+                                ....|+++++|++++++|++++++||+|+++++++|+++.+++
T Consensus       131 ~~~~~--------------------------------~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~  178 (1034)
T 3ixz_A          131 EGDLT--------------------------------TDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQ  178 (1034)
T ss_pred             cCCCc--------------------------------cccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCe
Confidence            11110                                0124889999999999999999999999999999999999999


Q ss_pred             eEEeeecch----hhhhhhhhhhhh
Q psy2749         162 RVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       162 ~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      ++|+|||..    .+++++|||+.+
T Consensus       179 a~ViRdG~~~~I~~~eLv~GDiV~l  203 (1034)
T 3ixz_A          179 ATVIRDGDKFQINADQLVVGDLVEM  203 (1034)
T ss_pred             eEEEECCEEEEEEHHHCCCCcEEEE
Confidence            999999986    469999998766

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.89  E-value=2.5e-23  Score=208.97  Aligned_cols=148  Identities=59%  Similarity=0.975  Sum_probs=128.8

Q ss_pred             cccccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcc
Q psy2749           2 GLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAS   81 (217)
Q Consensus         2 ~~~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~   81 (217)
                      .++..+.++++++|+ |+..+|||++||++|+++||+|++++++++|+|++|+++|++||+++|++++++|++++.+...
T Consensus        47 ~~~~~~~~~~~~~l~-t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~  125 (1028)
T 2zxe_A           47 DDHKLSLDELHNKYG-TDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAA  125 (1028)
T ss_dssp             CCSSSCHHHHHHHHT-CCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCHHHHHHHhC-cCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc
Confidence            344459999999999 9988999999999999999999999999999999999999999999999999999998765421


Q ss_pred             CCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCce
Q psy2749          82 TVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF  161 (217)
Q Consensus        82 ~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~  161 (217)
                      ..+++.                                ..+|+++++|+++++++++++++||+|+++++++|+++.++.
T Consensus       126 ~~~~~~--------------------------------~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~  173 (1028)
T 2zxe_A          126 TEDEPA--------------------------------NDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQ  173 (1028)
T ss_dssp             SSCCCC--------------------------------CHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSE
T ss_pred             cccccc--------------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence            111110                                124889999999999999999999999999999999999999


Q ss_pred             eEEeeecch----hhhhhhhhhhhh
Q psy2749         162 RVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       162 ~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      ++|+|||..    .+++++|||+.+
T Consensus       174 a~V~Rdg~~~~I~~~~Lv~GDiV~l  198 (1028)
T 2zxe_A          174 ALVIRDGEKSTINAEFVVAGDLVEV  198 (1028)
T ss_dssp             EEEEETTEEEEEEGGGCCTTCEEEE
T ss_pred             eEEEECCEEEEEEHHHCCcCCEEEE
Confidence            999999974    469999999766

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.88  E-value=7.6e-23  Score=204.70  Aligned_cols=146  Identities=20%  Similarity=0.259  Sum_probs=129.1

Q ss_pred             Cccccc-CHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q psy2749           1 MGLTHA-KAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQ   79 (217)
Q Consensus         1 ~~~~~~-~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~   79 (217)
                      |..||. +.++++++|+ |+..+|||++|+++|+++||+|++++++++++|+++++||.+|++++|++++++|++++++.
T Consensus         2 ~~~~~~~~~~~~~~~l~-~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~   80 (995)
T 3ar4_A            2 MEAAHSKSTEECLAYFG-VSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFE   80 (995)
T ss_dssp             CTTGGGSCHHHHHHHHT-CCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSC
T ss_pred             cchhhhCCHHHHHHHhC-CCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            778886 9999999999 99889999999999999999999999999999999999999999999999999999987543


Q ss_pred             ccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCC
Q psy2749          80 ASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVP  159 (217)
Q Consensus        80 ~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~  159 (217)
                      .+.  .                                 ....|+++++|++++++++.++++||+|+++++++|+++.+
T Consensus        81 ~~~--~---------------------------------~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~  125 (995)
T 3ar4_A           81 EGE--E---------------------------------TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEP  125 (995)
T ss_dssp             CSS--G---------------------------------GGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSC
T ss_pred             ccc--c---------------------------------chhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            100  0                                 00248999999999999999999999999999999999999


Q ss_pred             ceeEEeeecc--h----hhhhhhhhhhhh
Q psy2749         160 QFRVTQSHVL--I----FDLLWLGIALTF  182 (217)
Q Consensus       160 ~~~~ViR~g~--~----~~~l~lg~iL~~  182 (217)
                      +.++|+|+|.  .    .+++++||++.+
T Consensus       126 ~~a~V~R~g~~~~~~I~~~~lv~GDiV~l  154 (995)
T 3ar4_A          126 EMGKVYRADRKSVQRIKARDIVPGDIVEV  154 (995)
T ss_dssp             SEEEEEBTTCSSCEEEEGGGCCTTCEEEE
T ss_pred             CeEEEEeCCCceEEEEEHHHCCCCCEEEE
Confidence            9999999875  2    369999998766

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=99.78  E-value=4.3e-21  Score=190.25  Aligned_cols=139  Identities=14%  Similarity=0.188  Sum_probs=121.9

Q ss_pred             ccccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccC
Q psy2749           3 LTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST   82 (217)
Q Consensus         3 ~~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~   82 (217)
                      +++.+.+|+++.|+ ++ .+|||++|+++|+++||+|++++++ +++|++|+++|++|+.++|++++++|++++....  
T Consensus        14 ~~~~~~~~~~~~l~-~~-~~GLs~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aaiis~~l~~~~~--   88 (885)
T 3b8c_A           14 LEKIPIEEVFQQLK-CS-REGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDG--   88 (885)
T ss_dssp             CSSSSTTCCTTTSS-SC-SSCSTHHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHHHGGGGSSCCTT--
T ss_pred             hHhCCHHHHHHHhC-CC-CCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence            34459999999999 87 6899999999999999999999877 7889999999999999999999999988753211  


Q ss_pred             CCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCcee
Q psy2749          83 VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFR  162 (217)
Q Consensus        83 ~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~  162 (217)
                                                          ...+|.++++|+.++++++.++++||+|+++++++|+++.++.+
T Consensus        89 ------------------------------------~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a  132 (885)
T 3b8c_A           89 ------------------------------------RPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKT  132 (885)
T ss_dssp             ------------------------------------SCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCC
T ss_pred             ------------------------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeE
Confidence                                                01258999999999999999999999999999999999999999


Q ss_pred             EEeeecch----hhhhhhhhhhhh
Q psy2749         163 VTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       163 ~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      +|+|||..    .+++++||++.+
T Consensus       133 ~V~RdG~~~~I~~~~Lv~GDiV~l  156 (885)
T 3b8c_A          133 KVLRDGKWSEQEAAILVPGDIVSI  156 (885)
T ss_dssp             CCCCSSCSCCCCTTTTCTTSBCCC
T ss_pred             EEEECCEEEEEEHHHCCCCCEEEE
Confidence            99999975    469999999766

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=99.76  E-value=2e-19  Score=178.83  Aligned_cols=125  Identities=16%  Similarity=0.142  Sum_probs=112.3

Q ss_pred             HHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q psy2749          11 VLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDN   90 (217)
Q Consensus        11 l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n   90 (217)
                      +.+.|+ ++..+|||++|+++|+++||+|++++++ +++|..|+++|.+|+.++|+++++++++++              
T Consensus        76 ~~~~l~-t~~~~GLs~~ea~~r~~~~G~N~l~~~~-~~~~~~~l~~f~~~~~~ll~~aai~s~~~g--------------  139 (920)
T 1mhs_A           76 PEDMLQ-TDTRVGLTSEEVVQRRRKYGLNQMKEEK-ENHFLKFLGFFVGPIQFVMEGAAVLAAGLE--------------  139 (920)
T ss_dssp             SSTTTT-TCCCCCCCSHHHHHHHHHTSSSSCCCCC-CSSHHHHTHHHHHHHHHHHHHHHHHCTTCS--------------
T ss_pred             HHHHhC-CCcCCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence            345688 8878999999999999999999999765 779999999999999999999999987652              


Q ss_pred             ccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch
Q psy2749          91 LTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI  170 (217)
Q Consensus        91 ~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~  170 (217)
                                                     +|.++.+|++++++++.++++||+|+++++++|+++.++.++|+|||..
T Consensus       140 -------------------------------~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG~~  188 (920)
T 1mhs_A          140 -------------------------------DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTL  188 (920)
T ss_dssp             -------------------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSSSE
T ss_pred             -------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEECCEE
Confidence                                           4888888899999999999999999999999999999999999999975


Q ss_pred             ----hhhhhhhhhhhh
Q psy2749         171 ----FDLLWLGIALTF  182 (217)
Q Consensus       171 ----~~~l~lg~iL~~  182 (217)
                          .+++++||++.+
T Consensus       189 ~~I~~~eLv~GDiV~l  204 (920)
T 1mhs_A          189 KEIEAPEVVPGDILQV  204 (920)
T ss_dssp             EECCTTTSCTTSEEEE
T ss_pred             EEEEHHHcCCCCEEEe
Confidence                469999998765

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=98.60  E-value=1.5e-08  Score=102.03  Aligned_cols=115  Identities=27%  Similarity=0.364  Sum_probs=92.4

Q ss_pred             chhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch--------
Q psy2749         101 LFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI--------  170 (217)
Q Consensus       101 ~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~--------  170 (217)
                      .+||.+|.+|+.++++|+...|+.+..+ ....-..|.+.+-.+.+...+...++++.++...++  ....+        
T Consensus        51 ~~~~~~~~~~~~~~l~~~~~~GLs~~ea-~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~  129 (1034)
T 3ixz_A           51 INDHQLSVAELEQKYQTSATKGLSASLA-AELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQA  129 (1034)
T ss_pred             cchhhCCHHHHHHHhCCCcccCCCHHHH-HHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999997666888887 778888999988766666666667777766543321  11111        


Q ss_pred             -------hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         171 -------FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       171 -------~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                             .++++.+++|++|+++|++++||||+|++++++++++|.|++++|.
T Consensus       130 ~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~Vi  182 (1034)
T 3ixz_A          130 SEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVI  182 (1034)
T ss_pred             ccCCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence                   2367889999999999999999999999999999999999998874

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=98.19  E-value=2.7e-07  Score=92.80  Aligned_cols=116  Identities=33%  Similarity=0.405  Sum_probs=92.9

Q ss_pred             cchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch-------
Q psy2749         100 WLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI-------  170 (217)
Q Consensus       100 ~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~-------  170 (217)
                      ..+||.+|.+++.++++|+...++.+..+ -...-..|.+.+-.+.+...+...++++.++...++  ....+       
T Consensus        45 ~~~~~~~~~~~~~~~l~t~~~~GLs~~e~-~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~  123 (1028)
T 2zxe_A           45 SMDDHKLSLDELHNKYGTDLTRGLTNARA-KEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQ  123 (1028)
T ss_dssp             CCCCSSSCHHHHHHHHTCCSSSCBCHHHH-HHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhCCHHHHHHHhCcCccCCCCHHHH-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            45789999999999999986556887776 778888999988766566666677888877765432  11111       


Q ss_pred             --------hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         171 --------FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       171 --------~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                              .++.+.+++|++|+++|++++|+|++|++++++++++|.|++++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~  177 (1028)
T 2zxe_A          124 AATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVI  177 (1028)
T ss_dssp             HHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEE
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEE
Confidence                    1478899999999999999999999999999999999999988763

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=97.79  E-value=5.1e-06  Score=83.20  Aligned_cols=114  Identities=12%  Similarity=0.076  Sum_probs=85.3

Q ss_pred             hhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch---------
Q psy2749         102 FRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI---------  170 (217)
Q Consensus       102 ~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~---------  170 (217)
                      .||.+|.++++++++|+...++.+..+ -...-..+.+..-.+.+..-....++++.++...++  ....+         
T Consensus         4 ~~~~~~~~~~~~~l~~~~~~GLs~~e~-~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~   82 (995)
T 3ar4_A            4 AAHSKSTEECLAYFGVSETTGLTPDQV-KRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEG   82 (995)
T ss_dssp             TGGGSCHHHHHHHHTCCTTTCBCHHHH-HHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             hhhhCCHHHHHHHhCCCcccCCCHHHH-HHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            579999999999999987656888777 677778888888665554555556667665543221  11111         


Q ss_pred             ---hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         171 ---FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       171 ---~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                         ....+.+.++++++++|+++++|||+|++++++++++|.|.+++|.
T Consensus        83 ~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~  131 (995)
T 3ar4_A           83 EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVY  131 (995)
T ss_dssp             SGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEE
T ss_pred             ccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEE
Confidence               1144567788889999999999999999999999999999988763

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=97.59  E-value=2.8e-06  Score=71.39  Aligned_cols=32  Identities=59%  Similarity=0.743  Sum_probs=30.8

Q ss_pred             hhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         185 VITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       185 ~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      ++++.|+||||+|++++|+||++|+|++|.|.
T Consensus       221 ~i~~~~~~~q~~~~~~~~~~~~~~~p~~~~v~  252 (254)
T 1bg5_A          221 LVPRGSSYYQEAKSSKIMESFKNMVPQQALVN  252 (254)
T ss_dssp             CCSCCCTTTTCSSSCSCCSSSCCCCCCCCCCS
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhCCCceEEe
Confidence            68999999999999999999999999999986

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=97.02  E-value=1.6e-05  Score=78.91  Aligned_cols=113  Identities=11%  Similarity=0.034  Sum_probs=80.4

Q ss_pred             chhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch--------
Q psy2749         101 LFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI--------  170 (217)
Q Consensus       101 ~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~--------  170 (217)
                      .++|.+|.+|+.+++.++.. ++.+..+ -...-..+.+..-.+ +...+...++++.++...++  ....+        
T Consensus        12 ~~~~~~~~~~~~~~l~~~~~-GLs~~e~-~~r~~~~G~N~l~~~-~~~~~~~~l~~~~~p~~~il~~aaiis~~l~~~~~   88 (885)
T 3b8c_A           12 VDLEKIPIEEVFQQLKCSRE-GLTTQEG-EDRIQIFGPNKLEEK-KESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDG   88 (885)
T ss_dssp             CCCSSSSTTCCTTTSSSCSS-CSTHHHH-HHHSSSCCSCCTTTT-CCCTTSSTTSCCCGGGSSHHHHHHHGGGGSSCCTT
T ss_pred             hhhHhCCHHHHHHHhCCCCC-CCCHHHH-HHHHHhcCCCccCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            36789999999999998754 5887766 666767777776433 33333444556655554331  11111        


Q ss_pred             -hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         171 -FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       171 -~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                       ..+.+.+.+|++++++|++++|+|++|+++++++++++.|++++|.
T Consensus        89 ~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~  135 (885)
T 3b8c_A           89 RPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVL  135 (885)
T ss_dssp             SCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence             1134556677888999999999999999999999999999999874

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=95.14  E-value=0.0048  Score=61.54  Aligned_cols=43  Identities=9%  Similarity=0.029  Sum_probs=37.8

Q ss_pred             hhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749         174 LWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR  216 (217)
Q Consensus       174 l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~  216 (217)
                      .+.+.+|++++++|++++|+|+++++++++++++|.|.+++|.
T Consensus       141 ~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~  183 (920)
T 1mhs_A          141 WVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVL  183 (920)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEE
Confidence            3445677888999999999999999999999999999998763

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=94.71  E-value=0.00099  Score=55.60  Aligned_cols=34  Identities=56%  Similarity=0.739  Sum_probs=32.2

Q ss_pred             HHHhhcccccccchHHHHHHHhccCCceeEEeee
Q psy2749         134 IVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSH  167 (217)
Q Consensus       134 ~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~  167 (217)
                      ++++.++|+||+++++.+++|++|++++|+|+|.
T Consensus       221 ~i~~~~~~~q~~~~~~~~~~~~~~~p~~~~v~~~  254 (254)
T 1bg5_A          221 LVPRGSSYYQEAKSSKIMESFKNMVPQQALVNSS  254 (254)
T ss_dssp             CCSCCCTTTTCSSSCSCCSSSCCCCCCCCCCSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhCCCceEEecC
Confidence            4789999999999999999999999999999985

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=94.15  E-value=0.047  Score=53.11  Aligned_cols=61  Identities=15%  Similarity=0.217  Sum_probs=51.0

Q ss_pred             chhHHH-HHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEee-ecch----hhhhhhhhhhhh
Q psy2749         122 KLYLGI-VLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQS-HVLI----FDLLWLGIALTF  182 (217)
Q Consensus       122 ~~~~~i-~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR-~g~~----~~~l~lg~iL~~  182 (217)
                      .|.++. +|+..+.+.-.+..++++|+.+.+++|.++.+..++|+| ||..    .+++++||++.+
T Consensus       186 ~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v  252 (736)
T 3rfu_A          186 VYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRV  252 (736)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhCCCCCEEEE
Confidence            477766 555777888889999999999999999999999999987 8864    469999998765

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=92.35  E-value=0.024  Score=54.13  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749         125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       125 ~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      .+.+++.++.+.-.+..++++|+.+.+++|.++.+..++|+|+|..    .+++++||++..
T Consensus        98 ~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v  159 (645)
T 3j08_A           98 TSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIV  159 (645)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEE
Confidence            3555566677777888888889999999999999999999999975    469999998765

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=92.11  E-value=0.035  Score=53.68  Aligned_cols=60  Identities=12%  Similarity=0.161  Sum_probs=48.5

Q ss_pred             hhH-HHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749         123 LYL-GIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       123 ~~~-~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      |++ +.+++.++.+.-.+..++++|+.+.+++|.++.+..++|+|+|..    .+++++||++.+
T Consensus       173 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v  237 (723)
T 3j09_A          173 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIV  237 (723)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCEEEEEEHHHCCCCCEEEE
Confidence            444 455566666777788888888899999999999999999999975    469999998765

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}

Probab=91.75  E-value=0.041  Score=41.73  Aligned_cols=39  Identities=10%  Similarity=-0.026  Sum_probs=29.5

Q ss_pred             ccchHHHHHHHhccCCceeEEeeecch----------hhhhhhhhhhhh
Q psy2749         144 ESKSSAIMDSFKNLVPQFRVTQSHVLI----------FDLLWLGIALTF  182 (217)
Q Consensus       144 e~ka~k~~~~L~~~~~~~~~ViR~g~~----------~~~l~lg~iL~~  182 (217)
                      ++|+.+++++|.++.+..++|+|+|..          .+++++||++.+
T Consensus         2 ~~ka~~~l~~L~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v   50 (124)
T 2kij_A            2 SFTMSEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKV   50 (124)
T ss_dssp             ----CCHHHHHHHTCCSEEEEEECSSSTTCCEEEEEETTTCCTTCEEEC
T ss_pred             hHHHHHHHHHHhccCCCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEE
Confidence            578899999999999999999997641          348999998765

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F

Probab=87.68  E-value=0.15  Score=37.89  Aligned_cols=33  Identities=9%  Similarity=0.017  Sum_probs=28.1

Q ss_pred             HHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749         150 IMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF  182 (217)
Q Consensus       150 ~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~  182 (217)
                      ++++|.++.+..++|+|+|..    .+++++||++.+
T Consensus         2 al~~L~~l~p~~a~v~r~g~~~~i~~~~l~~GDiv~v   38 (113)
T 2hc8_A            2 AIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIV   38 (113)
T ss_dssp             HHHHHHHHSCSEEEEEETTEEEEEEGGGCCTTCEEEE
T ss_pred             HHHHHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEE
Confidence            578899999999999999964    469999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1wpga4	472	f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP	3e-16

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 74.3 bits (182), Expect = 3e-16
 Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 37/180 (20%)

Query: 5   HAK-AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFAL 63
           H+K  +E L   G +  T GLT  + K  LE+ G N L   +    W    +Q       
Sbjct: 5   HSKSTEECLAYFGVS-ETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63

Query: 64  LLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKL 123
           +L + A + F+    +       A                                    
Sbjct: 64  ILLLAACISFVLAWFEEGEETITA-----------------------------------F 88

Query: 124 YLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFV 183
               V+  ++I   I   +QE  +   +++ K   P         L   L   G  L+ V
Sbjct: 89  VEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAATEQDKTPLQQKLDEFGEQLSKV 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	99.92
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	98.66

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.92  E-value=2.1e-25  Score=204.67  Aligned_cols=134  Identities=21%  Similarity=0.281  Sum_probs=120.1

Q ss_pred             Cccccc-CHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q psy2749           1 MGLTHA-KAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQ   79 (217)
Q Consensus         1 ~~~~~~-~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~   79 (217)
                      |..||. +.+|++++|+ ||+++|||++||++|+++||+|++++++++|+|++++++|+||++++|+++|++|++++.+.
T Consensus         1 m~~~h~~~~e~v~~~l~-td~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~   79 (472)
T d1wpga4           1 MEAAHSKSTEECLAYFG-VSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFE   79 (472)
T ss_dssp             CTTGGGSCHHHHHHHHT-CCTTTCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTS
T ss_pred             CcChhhCCHHHHHHHhC-cCcccCcCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence            889997 9999999999 99999999999999999999999999999999999999999999999999999999998764


Q ss_pred             ccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCC
Q psy2749          80 ASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVP  159 (217)
Q Consensus        80 ~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~  159 (217)
                      ....                                   ...+|+++++|++++++|+.++++||+|+++++++++++.+
T Consensus        80 ~~~~-----------------------------------~~~~~~~~~~I~~vv~~n~~i~~~qe~~a~~~~~~l~~~~~  124 (472)
T d1wpga4          80 EGEE-----------------------------------TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEP  124 (472)
T ss_dssp             CTTS-----------------------------------TTSSSHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHGGGSC
T ss_pred             cccc-----------------------------------cchhHhHhhhhhheeeeeeeEEeEEechHHHHHHHHhhhcc
Confidence            3110                                   11359999999999999999999999999999999999998


Q ss_pred             ceeEEeeecch
Q psy2749         160 QFRVTQSHVLI  170 (217)
Q Consensus       160 ~~~~ViR~g~~  170 (217)
                      +....-|....
T Consensus       125 ~~~~~~~~P~d  135 (472)
T d1wpga4         125 AATEQDKTPLQ  135 (472)
T ss_dssp             CCCCCCCCHHH
T ss_pred             ccccccCchHH
Confidence            87766554443

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.66  E-value=3.1e-09  Score=96.02  Aligned_cols=113  Identities=12%  Similarity=0.082  Sum_probs=92.9

Q ss_pred             hhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch---------
Q psy2749         102 FRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI---------  170 (217)
Q Consensus       102 ~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~---------  170 (217)
                      ++|+.|+||++++++|+.+.|+.+..+ -...-..|.+..-++.+.......++++.++...++  ....+         
T Consensus         3 ~~h~~~~e~v~~~l~td~~~GLs~~ea-~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~   81 (472)
T d1wpga4           3 AAHSKSTEECLAYFGVSETTGLTPDQV-KRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEG   81 (472)
T ss_dssp             TGGGSCHHHHHHHHTCCTTTCBCHHHH-HHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTSCT
T ss_pred             ChhhCCHHHHHHHhCcCcccCcCHHHH-HHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcc
Confidence            579999999999999998767988887 788889999998777777777777788877765432  11111         


Q ss_pred             ---hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q psy2749         171 ---FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPG  215 (217)
Q Consensus       171 ---~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~  215 (217)
                         ....+.|++|.+|+++|+.++|+||+||||+++++++|.++...+
T Consensus        82 ~~~~~~~~~~~~I~~vv~~n~~i~~~qe~~a~~~~~~l~~~~~~~~~~  129 (472)
T d1wpga4          82 EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAATEQ  129 (472)
T ss_dssp             TSTTSSSHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHGGGSCCCCCC
T ss_pred             cccchhHhHhhhhhheeeeeeeEEeEEechHHHHHHHHhhhccccccc
Confidence               126778899999999999999999999999999999999988765