Psyllid ID: psy2754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MIYWDAALICLGCVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ
Secondary Structure (PSIPRED)
ccccccEEEEEcccEEcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccEEEEEEEccccccEEEEcccccHHHHHHHHccccEEEEEEccccccccccccEEEEcccEEEEEEEccccEEEEEEEEEEEEEEEcccccEEEEEEEEEccEEEEEccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcHEEEEEEEEcccccccccccccHHHHHHHHHHcccccHcHHHHHHHHHHHHcccccEEEEEEEccccccEEEEcccHHHHHHHHHHccccEEEEEEEcccccccccccEEEEcccEEEEEEcccccEEEEEEcEEEEEEEEcccccEEEEEEEEEEcccHcccHHHHHcccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MIYWDAALICLgcvgvrrhtpyfgqpdyRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFcledgpkrytigrtlipRYFRSIFDGGITELYynlkhpkesfhntsitldcdqctmvthhgkpmltkvctegrlilEFTFDDLMRIKSWHFAVRQHrelvprtivgmqdpsMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSrhkayalsprdclkTTLFQKWqrmvappgkresqrpankrrkrkgsqsggaansappapskkrspgpnfslasqdvmvvgepslmggefgdeDERLITRLEntqydagancldhdphfsdspswgggapdrgppqgntpssqdsdkkspavsq
Flexible Loop (DISEMBL)
MIYWDAALICLGCvgvrrhtpyfgqpdyRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTfcledgpkrytigrtlipryFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHkayalsprdCLKTTLFQkwqrmvappgkresqrpankrrkrkgsqsggaansappapskkrspGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQgntpssqdsdkkspavsq
Low Complexity Region (SEG)
MIYWDAALICLGCVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKRkgsqsggaansappapskkrspgpNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ
Disordered region (IsUnstruct)
*IYWDAALICLGCVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRM************************************************************************ITRL****Y************************************************
Disordered Region (DISOPRED)
*IYWDAALICLGCVGVRRHTPYFGQPDYRVYELNK********SDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELV***********************GITNSTLNYLRLCVILEPMQELMSRH*******************************************************************************************************************************************************
Disordered Region (DISEMBL)
MIYWDAALICLGCVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMV*****************************************PNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSD*********************************
Disordered Region (DISPRO)
MIYWDAALICLGCVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAP*******************************************LASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGAN*******************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIYWDAALICLGCVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q9W676	371	LIM domain-binding protei	yes	N/A	0.945	0.935	0.708	1e-147
O43679	373	LIM domain-binding protei	yes	N/A	0.929	0.914	0.704	1e-145
O55203	373	LIM domain-binding protei	yes	N/A	0.940	0.924	0.698	1e-145
Q6NVL6	373	LIM domain-binding protei	yes	N/A	0.937	0.922	0.707	1e-144
P70060	375	LIM domain-binding protei	N/A	N/A	0.937	0.917	0.700	1e-142
O42252	411	LIM domain-binding protei	no	N/A	0.937	0.836	0.700	1e-142
Q86U70	411	LIM domain-binding protei	no	N/A	0.937	0.836	0.689	1e-139
P70662	411	LIM domain-binding protei	no	N/A	0.937	0.836	0.689	1e-139
Q1EQW7	398	LIM domain-binding protei	N/A	N/A	0.937	0.864	0.645	1e-137
O73715	374	LIM domain-binding protei	no	N/A	0.931	0.914	0.693	1e-137

>sp|Q9W676|LDB2_CHICK LIM domain-binding protein 2 OS=Gallus gallus GN=LDB2 PE=2 SV=1

 Score =  521 bits (1341), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/357 (70%), Positives = 294/357 (82%), Gaps = 10/357 (2%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRHTPY  QP+YR+YE+NKRLQ R+E+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19  RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79  TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
           TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +LEQL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILPMHAQDPQVLEQLSKNITRMGLTN 198

Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
            TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++P  KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257

Query: 255 RKRK----GSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
           RKRK     + +  A N+A    SKK+S   N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTNSKKKSAAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 317

Query: 311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ 367
           ITRLENTQYDA AN +D +  F++SP+ G  +P    P  N  +   S+  +P  SQ
Sbjct: 318 ITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKPPANQETK--SENPTPQASQ 371

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.
Gallus gallus (taxid: 9031)

>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1

 Score =  514 bits (1325), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/355 (70%), Positives = 295/355 (83%), Gaps = 14/355 (3%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRHTPY  QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19  RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79  TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
           TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198

Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
            TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++P  KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257

Query: 255 RKRK----GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
           RKRK     + +  A N+A    SKK++   N SL+SQ  DVMVVGEP+LMGGEFGDEDE
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDE 317

Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
           RLITRLENTQYDA AN +D +  F++SP+ G  +P    P    P++Q++  ++P
Sbjct: 318 RLITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENP 367

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Homo sapiens (taxid: 9606)

>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 OS=Mus musculus GN=Ldb2 PE=1 SV=2

 Score =  514 bits (1323), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/361 (69%), Positives = 296/361 (81%), Gaps = 16/361 (4%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRHTPY  QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19  RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVC
Sbjct: 79  TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC 138

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
           TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198

Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
            TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++P  KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257

Query: 255 RKRK----GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
           RKRK     + +  A N+   A SKK++P  + SLA+Q  DVMVVGEP+LMGGEFGDEDE
Sbjct: 258 RKRKNSTSSTSNSSAGNTTNSAGSKKKTPAASLSLATQVPDVMVVGEPTLMGGEFGDEDE 317

Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQD--SDKKSPAVS 366
           RLITRLENTQYDA AN +D +  F++SP+ G  +P    P    P++Q+  S+   P  S
Sbjct: 318 RLITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENAPPQAS 372

Query: 367 Q 367
           Q
Sbjct: 373 Q 373

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Mus musculus (taxid: 10090)

>sp|Q6NVL6|LDB1_XENTR LIM domain-binding protein 1 OS=Xenopus tropicalis GN=ldb1 PE=2 SV=1

 Score =  511 bits (1317), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/355 (70%), Positives = 288/355 (81%), Gaps = 11/355 (3%)

Query: 15  GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
           G+ RHTPY  Q DYR++ELNKRLQ  TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20  GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79

Query: 75  RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
           RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN  ++LDCDQCTMVT HGKPM T+
Sbjct: 80  RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139

Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
           VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M  QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199

Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
           +NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP +   Q P N
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAP-N 258

Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDER 309
           KRRKRK   GS       +   + SKK+SP   F+L+SQDVMVVGEP+LMGGEFGDEDER
Sbjct: 259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDER 318

Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
           LITRLENTQ+DA AN +D +  F++SP+ G  +P    P    PSSQ+S  ++P 
Sbjct: 319 LITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 368

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation.

Xenopus tropicalis (taxid: 8364)

>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 OS=Xenopus laevis GN=ldb1 PE=1 SV=2

 Score =  505 bits (1300), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/357 (70%), Positives = 288/357 (80%), Gaps = 13/357 (3%)

Query: 15  GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
           G+ RHTPY  Q DYR++ELNKRLQ  TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20  GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79

Query: 75  RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
           RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN  ++LDCDQCTMVT HGKPM T+
Sbjct: 80  RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139

Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
           VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M  QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199

Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
           +NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP +   Q P+ 
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAPS- 258

Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDED 307
           KRRKRK   GS       +   + SKK+SP   F+L+SQ  DVMVVGEP+LMGGEFGDED
Sbjct: 259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 318

Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
           ERLITRLENTQ+DA AN +D +  F++SP+ G  +P    P    PSSQ+S  ++P 
Sbjct: 319 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 370

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation.

Xenopus laevis (taxid: 8355)

>sp|O42252|LDB1_CHICK LIM domain-binding protein 1 OS=Gallus gallus GN=LDB1 PE=2 SV=1

 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/357 (70%), Positives = 289/357 (80%), Gaps = 13/357 (3%)

Query: 15  GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
           G+ RHTPY  Q DYR++ELNKRLQ  TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56  GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115

Query: 75  RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
           RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN  ++LDCDQCTMVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 175

Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
           VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M  QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235

Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
           +NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP +   Q+P+ 
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 294

Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDED 307
           KRRKRK   GS       +   + SKK+SP   F+L+SQ  DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354

Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
           ERLITRLENTQ+DA AN +D +  F++SP+ G  +P    P    PSSQ+S  ++P 
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 406

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Gallus gallus (taxid: 9031)

>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapiens GN=LDB1 PE=1 SV=2

 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/357 (68%), Positives = 288/357 (80%), Gaps = 13/357 (3%)

Query: 15  GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
           G+ RHTPY  Q DYR++ELNKRLQ  TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56  GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115

Query: 75  RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
           RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+  ++LDCDQ +MVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 175

Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
           VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M  QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235

Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
           +NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP +   Q+P+ 
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS- 294

Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDED 307
           KRRKRK   GS       +   + SKK+SP   F+L+SQ  DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354

Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
           ERLITRLENTQ+DA AN +D +  F++SP+ G  +P    P    PSSQ+S  ++P 
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 406

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. May regulate the transcriptional activity of LIM-containing proteins by determining specific partner interactions. May play a role in the development of motor neurons. Acts synergistically with LHX1/LIM1 in axis formation and activation of gene expression. Acts with LMO2 in the regulation of red blood cell development, maintaining erythroid precursors in an immature state.

Homo sapiens (taxid: 9606)

>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculus GN=Ldb1 PE=1 SV=2

 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/357 (68%), Positives = 288/357 (80%), Gaps = 13/357 (3%)

Query: 15  GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
           G+ RHTPY  Q DYR++ELNKRLQ  TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56  GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115

Query: 75  RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
           RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+  ++LDCDQ +MVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 175

Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
           VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M  QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235

Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
           +NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP +   Q+P+ 
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 294

Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDED 307
           KRRKRK   GS       +   + SKK+SP   F+L+SQ  DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354

Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
           ERLITRLENTQ+DA AN +D +  F++SP+ G  +P    P    PSSQ+S  ++P 
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 406

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. May regulate the transcriptional activity of LIM-containing proteins by determining specific partner interactions. May play a role in the development of motor neurons. Acts synergistically with LHX1/LIM1 in axis formation and activation of gene expression. Acts with LMO2 in the regulation of red blood cell development, maintaining erythroid precursors in an immature state.

Mus musculus (taxid: 10090)

>sp|Q1EQW7|LDB2_XENLA LIM domain-binding protein 2 OS=Xenopus laevis GN=ldb2 PE=2 SV=1

 Score =  489 bits (1259), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/381 (64%), Positives = 291/381 (76%), Gaps = 37/381 (9%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRH PY  QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19  RRHAPYMVQPEYRIYEMNKRLQTRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79  TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
           TEGRLILEFTFDDLMRIK+WHF +RQ+REL+PR+I+ M  QDP +LEQL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELLPRSILAMHAQDPQVLEQLSKNITRMGLTN 198

Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
            TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++   KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQTTTKR 257

Query: 255 RKRK----GSQSGGAANSAPPAPSKKRSPGPNFSLASQ---------------------- 288
           RKRK     + +  A N+A  A ++K+ P  + +L++Q                      
Sbjct: 258 RKRKNSTNNASNSNAGNNATSAYNRKKVPAASLNLSNQVPFPTTKKCIGDKTRVRRNYRG 317

Query: 289 -----DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAP 343
                DVMVVGEP+LMGGEFGDEDERLITRLENTQYDA AN +D +  F+ SP+ G  +P
Sbjct: 318 IRNGLDVMVVGEPTLMGGEFGDEDERLITRLENTQYDA-ANGMDDEEDFNSSPALGNNSP 376

Query: 344 --DRGPPQGNTPSSQDSDKKS 362
              + PP   T S   + + S
Sbjct: 377 WNSKPPPNAETKSDNPTQQAS 397

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Xenopus laevis (taxid: 8355)

>sp|O73715|LDB1A_DANRE LIM domain-binding protein 1-A OS=Danio rerio GN=ldb1a PE=2 SV=1

 Score =  488 bits (1255), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/356 (69%), Positives = 285/356 (80%), Gaps = 14/356 (3%)

Query: 15  GVRRHTPYFGQPDYRVYELNKRLQQRTEES-DNLWWDAFATEFFEDDATLTLTFCLEDGP 73
           G+ RHTPY  Q DYR++ELNKRLQ  TE+  DNLWWDAF TEFFEDDA LT+TFCLEDGP
Sbjct: 20  GIGRHTPYGNQTDYRIFELNKRLQNWTEQDCDNLWWDAFTTEFFEDDAMLTITFCLEDGP 79

Query: 74  KRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLT 133
           KRYTIGRTLIPRYFRSIF+GG TEL+Y LKHPKESFHN  ++LDCDQCTMVT +GKPM T
Sbjct: 80  KRYTIGRTLIPRYFRSIFEGGATELFYVLKHPKESFHNNFVSLDCDQCTMVTQNGKPMFT 139

Query: 134 KVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQG 191
           +VC EGRL LEF FDD+MRIK+WHF++RQHRE+VPR+I+ M  QDP ML+QL+KNITR G
Sbjct: 140 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHREVVPRSILAMHAQDPQMLDQLSKNITRCG 199

Query: 192 ITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPA 251
           ++NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP +   Q P 
Sbjct: 200 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAP- 258

Query: 252 NKRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDE 308
           NKRRKRK   GS       +   + SKK+SP  +F+L+SQDVMVVGEP+LMGGEFGDEDE
Sbjct: 259 NKRRKRKMSGGSTMSSGGGNNNNSNSKKKSPASSFALSSQDVMVVGEPTLMGGEFGDEDE 318

Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPS------WGGGAPDRGPPQGNTPSSQDS 358
           RLITRLENTQ+DA AN +D +  F+ SP+      W   AP     + + PSSQ S
Sbjct: 319 RLITRLENTQFDA-ANGIDDEDSFNSSPTMGTNSPWNSKAPSSQQGKNDNPSSQSS 373

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
91077994	575	PREDICTED: similar to lim domain binding	0.961	0.613	0.869	0.0
270001422	708	hypothetical protein TcasGA2_TC000244 [T	0.945	0.490	0.868	0.0
242014824	382	LIM domain-binding protein, putative [Pe	0.940	0.903	0.879	0.0
157128172	576	lim domain binding protein [Aedes aegypt	0.945	0.602	0.813	1e-170
157134433	576	lim domain binding protein [Aedes aegypt	0.945	0.602	0.813	1e-170
340717783	617	PREDICTED: LIM domain-binding protein 2-	0.858	0.510	0.893	1e-168
328776943	822	PREDICTED: hypothetical protein LOC41123	0.850	0.379	0.893	1e-167
383856253	697	PREDICTED: uncharacterized protein LOC10	0.850	0.447	0.896	1e-167
380028812	601	PREDICTED: LOW QUALITY PROTEIN: LIM doma	0.880	0.537	0.868	1e-166
345489287	669	PREDICTED: LIM domain-binding protein 2-	0.871	0.478	0.869	1e-165

>gi|91077994|ref|XP_969024.1| PREDICTED: similar to lim domain binding protein [Tribolium castaneum]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/368 (86%), Positives = 337/368 (91%), Gaps = 15/368 (4%)

Query: 14  VGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGP 73
           +  RRHTPYFGQPDYR+YELNKRLQQRTEESDNLWWDAFATEFFEDDA+LTL FCLEDGP
Sbjct: 209 IMARRHTPYFGQPDYRIYELNKRLQQRTEESDNLWWDAFATEFFEDDASLTLAFCLEDGP 268

Query: 74  KRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLT 133
           KRYTIGRTLIPRYFRSIF+GG+TELYYN+KHPKESFHNTSITLDCDQCTM+THHGKP+ T
Sbjct: 269 KRYTIGRTLIPRYFRSIFEGGVTELYYNMKHPKESFHNTSITLDCDQCTMITHHGKPLFT 328

Query: 134 KVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM---QDPSMLEQLTKNITRQ 190
           KVCTEGRLILEFTFDDLMRIKSWHFAVR HREL+PR++VGM   QDPSML+QL+KNITRQ
Sbjct: 329 KVCTEGRLILEFTFDDLMRIKSWHFAVRTHRELIPRSVVGMHSQQDPSMLDQLSKNITRQ 388

Query: 191 GITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRP 250
           GITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRP
Sbjct: 389 GITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRP 448

Query: 251 ANKRRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
           ANKRRKRKGS SGGA N+A P P+KKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERL
Sbjct: 449 ANKRRKRKGSNSGGAPNNATPTPNKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERL 508

Query: 311 ITRLENTQYDAGANCLDHDPH--FSDSP-----SWGGGAPDR----GPPQGNTPSSQDSD 359
           ITRLENTQYDA AN LDHD H   +DSP     SWG G  DR    GP QGNTPS+QDSD
Sbjct: 509 ITRLENTQYDA-ANSLDHDNHGFHADSPMPGSNSWGAGVGDRGPGVGPSQGNTPSNQDSD 567

Query: 360 KKSPAVSQ 367
           KKSPAVSQ
Sbjct: 568 KKSPAVSQ 575

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001422|gb|EEZ97869.1| hypothetical protein TcasGA2_TC000244 [Tribolium castaneum]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/365 (86%), Positives = 333/365 (91%), Gaps = 18/365 (4%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRHTPYFGQPDYR+YELNKRLQQRTEESDNLWWDAFATEFFEDDA+LTL FCLEDGPKRY
Sbjct: 348 RRHTPYFGQPDYRIYELNKRLQQRTEESDNLWWDAFATEFFEDDASLTLAFCLEDGPKRY 407

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYFRSIF+GG+TELYYN+KHPKESFHNTSITLDCDQCTM+THHGKP+ TKVC
Sbjct: 408 TIGRTLIPRYFRSIFEGGVTELYYNMKHPKESFHNTSITLDCDQCTMITHHGKPLFTKVC 467

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM---QDPSMLEQLTKNITRQGIT 193
           TEGRLILEFTFDDLMRIKSWHFAVR HREL+PR++VGM   QDPSML+QL+KNITRQGIT
Sbjct: 468 TEGRLILEFTFDDLMRIKSWHFAVRTHRELIPRSVVGMHSQQDPSMLDQLSKNITRQGIT 527

Query: 194 NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANK 253
           NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP   ESQRPANK
Sbjct: 528 NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP---ESQRPANK 584

Query: 254 RRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITR 313
           RRKRKGS SGGA N+A P P+KKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITR
Sbjct: 585 RRKRKGSNSGGAPNNATPTPNKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITR 644

Query: 314 LENTQYDAGANCLDHDPH--FSDSP-----SWGGGAPDR----GPPQGNTPSSQDSDKKS 362
           LENTQYDA AN LDHD H   +DSP     SWG G  DR    GP QGNTPS+QDSDKKS
Sbjct: 645 LENTQYDA-ANSLDHDNHGFHADSPMPGSNSWGAGVGDRGPGVGPSQGNTPSNQDSDKKS 703

Query: 363 PAVSQ 367
           PAVSQ
Sbjct: 704 PAVSQ 708

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014824|ref|XP_002428085.1| LIM domain-binding protein, putative [Pediculus humanus corporis] gi|212512604|gb|EEB15347.1| LIM domain-binding protein, putative [Pediculus humanus corporis]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/364 (87%), Positives = 334/364 (91%), Gaps = 19/364 (5%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRHTPYFGQPDYR+YELNKRLQQRTEESDNLWWDAFATEFFEDDA LTLTFCLEDGPKRY
Sbjct: 25  RRHTPYFGQPDYRIYELNKRLQQRTEESDNLWWDAFATEFFEDDAQLTLTFCLEDGPKRY 84

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYFRSIF+GG+TELYYNLKHPKESFHNTSITLDC+QC+M+THHGKPM TKVC
Sbjct: 85  TIGRTLIPRYFRSIFEGGVTELYYNLKHPKESFHNTSITLDCEQCSMITHHGKPMFTKVC 144

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM---QDPSMLEQLTKNITRQGIT 193
           TEGRLILEFTFDDLMRIK+WHF+VR HREL+PR++VGM   QDPSMLEQL+KNITRQGIT
Sbjct: 145 TEGRLILEFTFDDLMRIKTWHFSVRTHRELIPRSVVGMHSAQDPSMLEQLSKNITRQGIT 204

Query: 194 NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANK 253
           NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP   ESQRPANK
Sbjct: 205 NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP---ESQRPANK 261

Query: 254 RRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITR 313
           RRKRKGS S    N+A P P+KKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITR
Sbjct: 262 RRKRKGSNSAAVNNTA-PVPNKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITR 320

Query: 314 LENTQYDAGANCLDHDPH-FSDSP------SWGGGAPDR---GPPQGNTPSSQDSDKKSP 363
           LENTQYDA AN LDHD H FSDSP      SWGGG PDR   GPPQGNTPSSQDSDKKSP
Sbjct: 321 LENTQYDA-ANSLDHDNHGFSDSPMTGGPNSWGGG-PDRGPIGPPQGNTPSSQDSDKKSP 378

Query: 364 AVSQ 367
           AVSQ
Sbjct: 379 AVSQ 382

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128172|ref|XP_001661340.1| lim domain binding protein [Aedes aegypti] gi|108872666|gb|EAT36891.1| AAEL011058-PA, partial [Aedes aegypti]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 305/375 (81%), Positives = 322/375 (85%), Gaps = 28/375 (7%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRH  YFGQPDYR+YELNKRLQQRTEESDN WWD+FA EFFEDDATLTLTFCLEDGPKRY
Sbjct: 206 RRHA-YFGQPDYRIYELNKRLQQRTEESDNCWWDSFANEFFEDDATLTLTFCLEDGPKRY 264

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYFRSIF+GG+TELY+NL+H KESFHNTSITLDCDQCTM T HGKPM TKV 
Sbjct: 265 TIGRTLIPRYFRSIFEGGVTELYFNLRHSKESFHNTSITLDCDQCTMETLHGKPMYTKVI 324

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQ----DPSMLEQLTKNITRQGI 192
           TEGRLILEFTFDDLMRIKSWHFAVR HREL+PR++V M     DPSMLEQLTKNITRQGI
Sbjct: 325 TEGRLILEFTFDDLMRIKSWHFAVRAHRELIPRSVVAMHTQQPDPSMLEQLTKNITRQGI 384

Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
           TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGK  +QRPAN
Sbjct: 385 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKLYAQRPAN 444

Query: 253 KRRKRKGSQSG-GAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLI 311
           KRRKRKGS SG GA N+ PPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLI
Sbjct: 445 KRRKRKGSSSGAGAGNAGPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLI 504

Query: 312 TRLENTQYDAGANCLDHDPH-----FSDSP-----------SWG---GGAPDRGPPQGNT 352
           TRLENTQYDA AN L+H+ H      +DSP           SW    GG P  G P  + 
Sbjct: 505 TRLENTQYDA-ANSLEHESHNAFGGHNDSPMTGPGGPGGPNSWQVDRGGGP--GVPNNSG 561

Query: 353 PSSQDSDKKSPAVSQ 367
           P+SQDSDKKSP+VSQ
Sbjct: 562 PASQDSDKKSPSVSQ 576

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134433|ref|XP_001663300.1| lim domain binding protein [Aedes aegypti] gi|108870464|gb|EAT34689.1| AAEL013094-PA, partial [Aedes aegypti]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 305/375 (81%), Positives = 322/375 (85%), Gaps = 28/375 (7%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRH  YFGQPDYR+YELNKRLQQRTEESDN WWD+FA EFFEDDATLTLTFCLEDGPKRY
Sbjct: 206 RRHA-YFGQPDYRIYELNKRLQQRTEESDNCWWDSFANEFFEDDATLTLTFCLEDGPKRY 264

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYFRSIF+GG+TELY+NL+H KESFHNTSITLDCDQCTM T HGKPM TKV 
Sbjct: 265 TIGRTLIPRYFRSIFEGGVTELYFNLRHSKESFHNTSITLDCDQCTMETLHGKPMYTKVI 324

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQ----DPSMLEQLTKNITRQGI 192
           TEGRLILEFTFDDLMRIKSWHFAVR HREL+PR++V M     DPSMLEQLTKNITRQGI
Sbjct: 325 TEGRLILEFTFDDLMRIKSWHFAVRAHRELIPRSVVAMHTQQPDPSMLEQLTKNITRQGI 384

Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
           TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGK  +QRPAN
Sbjct: 385 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKLYAQRPAN 444

Query: 253 KRRKRKGSQSG-GAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLI 311
           KRRKRKGS SG GA N+ PPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLI
Sbjct: 445 KRRKRKGSSSGAGAGNAGPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLI 504

Query: 312 TRLENTQYDAGANCLDHDPH-----FSDSP-----------SWG---GGAPDRGPPQGNT 352
           TRLENTQYDA AN L+H+ H      +DSP           SW    GG P  G P  + 
Sbjct: 505 TRLENTQYDA-ANSLEHESHNAFGGHNDSPMTGPGGPGGPNSWQVDRGGGP--GVPNNSG 561

Query: 353 PSSQDSDKKSPAVSQ 367
           P+SQDSDKKSP+VSQ
Sbjct: 562 PASQDSDKKSPSVSQ 576

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717783|ref|XP_003397355.1| PREDICTED: LIM domain-binding protein 2-like [Bombus terrestris]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 286/320 (89%), Positives = 301/320 (94%), Gaps = 5/320 (1%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRHTPYFGQPDYR+YELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY
Sbjct: 232 RRHTPYFGQPDYRLYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 291

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYFRSIF+GG+TELYYNLKHPKESFHNTSITLDCD C MVTHHGKPM TKVC
Sbjct: 292 TIGRTLIPRYFRSIFEGGVTELYYNLKHPKESFHNTSITLDCDNCVMVTHHGKPMFTKVC 351

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM-QDPSMLEQLTKNITRQGITNS 195
           TEGRLILEFTFDDLMRIKSWH +VR H+ELVPRT+VGM QDP+MLEQL+KNITRQGITNS
Sbjct: 352 TEGRLILEFTFDDLMRIKSWHMSVRTHKELVPRTVVGMQQDPTMLEQLSKNITRQGITNS 411

Query: 196 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRR 255
           TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQR  APPGKRESQRPA+KRR
Sbjct: 412 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRTFAPPGKRESQRPASKRR 471

Query: 256 KRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLE 315
           KRKGS + G  N+APPAPSKKRSPGPNFSLASQDVMVVGEPSLMGG+FG+EDER+ITRLE
Sbjct: 472 KRKGS-TPGPGNNAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGDFGEEDERVITRLE 530

Query: 316 NTQYDAGANCLDHDPHFSDS 335
           NTQYDA  N L  DPH  D+
Sbjct: 531 NTQYDA-TNSL--DPHSHDT 547

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776943|ref|XP_394712.4| PREDICTED: hypothetical protein LOC411238 [Apis mellifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/320 (89%), Positives = 300/320 (93%), Gaps = 8/320 (2%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRHTPYFGQPDYR+YELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY
Sbjct: 293 RRHTPYFGQPDYRLYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 352

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYFRSIF+GG+TELYYNLKHPKESFHNTSITLDCD C MVTHHGKPM TKVC
Sbjct: 353 TIGRTLIPRYFRSIFEGGVTELYYNLKHPKESFHNTSITLDCDNCVMVTHHGKPMFTKVC 412

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM-QDPSMLEQLTKNITRQGITNS 195
           TEGRLILEFTFDDLMRIKSWH +VR H+ELVPRT+VGM QDP+MLEQL+KNITRQGITNS
Sbjct: 413 TEGRLILEFTFDDLMRIKSWHMSVRTHKELVPRTVVGMQQDPTMLEQLSKNITRQGITNS 472

Query: 196 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRR 255
           TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP   ESQRPA+KRR
Sbjct: 473 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP---ESQRPASKRR 529

Query: 256 KRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLE 315
           KRKGS S G  N+APPAPSKKRSPGPNFSLASQDVMVVGEPSLMGG+FG+EDER+ITRLE
Sbjct: 530 KRKGSTS-GPGNNAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGDFGEEDERVITRLE 588

Query: 316 NTQYDAGANCLDHDPHFSDS 335
           NTQYDA  N L  DPH  D+
Sbjct: 589 NTQYDA-TNSL--DPHSHDT 605

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856253|ref|XP_003703624.1| PREDICTED: uncharacterized protein LOC100880826 [Megachile rotundata]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/320 (89%), Positives = 301/320 (94%), Gaps = 8/320 (2%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RRHTPYFGQPDYR+YELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY
Sbjct: 169 RRHTPYFGQPDYRLYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 228

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYFRSIF+GG+TELYYNLKHPKESFHNT+ITLDCD C MVTHHGKPM TKVC
Sbjct: 229 TIGRTLIPRYFRSIFEGGVTELYYNLKHPKESFHNTTITLDCDHCVMVTHHGKPMFTKVC 288

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM-QDPSMLEQLTKNITRQGITNS 195
           TEGRLILEFTFDDLMRIKSWH +VR H+ELVPR++VGM QDP+MLEQL+KNITRQGITNS
Sbjct: 289 TEGRLILEFTFDDLMRIKSWHMSVRTHKELVPRSVVGMQQDPTMLEQLSKNITRQGITNS 348

Query: 196 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRR 255
           TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP   ESQRPA+KRR
Sbjct: 349 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP---ESQRPASKRR 405

Query: 256 KRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLE 315
           KRKGS S G  N+APPAPSKKRSPGPNFSLASQDVMVVGEPSLMGG+FGDEDERLITRLE
Sbjct: 406 KRKGSTS-GPGNNAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGDFGDEDERLITRLE 464

Query: 316 NTQYDAGANCLDHDPHFSDS 335
           NTQYDA AN L  DPH  D+
Sbjct: 465 NTQYDA-ANSL--DPHSHDT 481

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028812|ref|XP_003698080.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain-binding protein 2-like, partial [Apis florea]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/334 (86%), Positives = 303/334 (90%), Gaps = 11/334 (3%)

Query: 11  LGCVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLE 70
            G    RRHTPYFGQPDYR+YELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLE
Sbjct: 69  FGSHYFRRHTPYFGQPDYRLYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLE 128

Query: 71  DGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKP 130
           DGPKRYTIGRTLIPRYFRSIF+GG+TELYYNLKHPKESFHNTSITLDCD C MVTHHGKP
Sbjct: 129 DGPKRYTIGRTLIPRYFRSIFEGGVTELYYNLKHPKESFHNTSITLDCDNCVMVTHHGKP 188

Query: 131 MLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM-QDPSMLEQLTKNITR 189
           M TKVCTEGRLILEFTFDDLMRIKSWH +VR H+ELVPRT+VGM QDP+MLEQL+KNITR
Sbjct: 189 MFTKVCTEGRLILEFTFDDLMRIKSWHMSVRTHKELVPRTVVGMQQDPTMLEQLSKNITR 248

Query: 190 QGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQR 249
           QGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP   ESQR
Sbjct: 249 QGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP---ESQR 305

Query: 250 PANKRRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDER 309
           PA+KRRKRKGS S G  N+APPAPSKKRSPGPNFSLASQDVMVVGEPSLMGG+FG+EDER
Sbjct: 306 PASKRRKRKGSTS-GPGNNAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGDFGEEDER 364

Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAP 343
           +ITRLENTQYDA  N L  DPH  D     GG P
Sbjct: 365 VITRLENTQYDA-TNSL--DPHSHDX---AGGPP 392

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489287|ref|XP_001599552.2| PREDICTED: LIM domain-binding protein 2-like isoform 1 [Nasonia vitripennis]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/330 (86%), Positives = 296/330 (89%), Gaps = 10/330 (3%)

Query: 17  RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
           RR  PY+ QPDYR YELNKRLQQRTEESDNLWWDAFA EFFEDDA+LTLTFCLEDGPKRY
Sbjct: 282 RRQPPYYQQPDYRFYELNKRLQQRTEESDNLWWDAFANEFFEDDASLTLTFCLEDGPKRY 341

Query: 77  TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
           TIGRTLIPRYFRSIF+GG+TELYYN+K PKESFHNTSITLDCD C MVTHHGKP  TKVC
Sbjct: 342 TIGRTLIPRYFRSIFEGGVTELYYNMKQPKESFHNTSITLDCDHCVMVTHHGKPTFTKVC 401

Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM---QDPSMLEQLTKNITRQGIT 193
           TEGRLILEFTFDDLMRIKSWH AVRQHRELVPR IV M   QDPS LEQLTKNITRQGIT
Sbjct: 402 TEGRLILEFTFDDLMRIKSWHMAVRQHRELVPRAIVSMTTTQDPSALEQLTKNITRQGIT 461

Query: 194 NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANK 253
           NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRP NK
Sbjct: 462 NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPTNK 521

Query: 254 RRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITR 313
           RRKRKGS S G  N+APPAPSKKRSPGPNFSL +QDVMVVGEPSLMGGEFGDEDERLITR
Sbjct: 522 RRKRKGSTS-GPGNNAPPAPSKKRSPGPNFSLTTQDVMVVGEPSLMGGEFGDEDERLITR 580

Query: 314 LENTQYDAGANCLDHDPHFSDSPSWGGGAP 343
           LENTQYDA AN L  DPH  ++    GG P
Sbjct: 581 LENTQYDA-ANSL--DPHSHEA---SGGPP 604

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
UNIPROTKB|F1NGI1	371	LDB2 "LIM domain-binding prote	0.945	0.935	0.686	2.7e-132
UNIPROTKB|Q9W676	371	LDB2 "LIM domain-binding prote	0.945	0.935	0.686	4.4e-132
UNIPROTKB|G5E9Y7	371	LDB2 "LIM domain-binding prote	0.929	0.919	0.688	4.4e-132
UNIPROTKB|F6R129	370	LDB2 "Uncharacterized protein"	0.926	0.918	0.685	2.4e-131
UNIPROTKB|O43679	373	LDB2 "LIM domain-binding prote	0.929	0.914	0.684	6.4e-131
UNIPROTKB|Q6NVL6	373	ldb1 "LIM domain-binding prote	0.934	0.919	0.686	4.5e-130
UNIPROTKB|F1NI21	366	LDB1 "LIM domain-binding prote	0.934	0.937	0.683	9.3e-130
MGI|MGI:894670	373	Ldb2 "LIM domain binding 2" [M	0.940	0.924	0.675	9.3e-130
UNIPROTKB|F1PRG9	372	LDB2 "Uncharacterized protein"	0.937	0.924	0.676	2.5e-129
UNIPROTKB|F1NI09	377	LDB1 "LIM domain-binding prote	0.937	0.912	0.680	1.4e-128

UNIPROTKB|F1NGI1 LDB2 "LIM domain-binding protein 2" [Gallus gallus (taxid:9031)]

 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 245/357 (68%), Positives = 282/357 (78%)

Query:    17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
             RRHTPY  QP+YR+YE+NKRLQ R+E+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query:    77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
             TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct:    79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138

Query:   137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
             TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +LEQL+KNITR G+TN
Sbjct:   139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLEQLSKNITRMGLTN 198

Query:   195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
              TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++P  KR
Sbjct:   199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257

Query:   255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
             RKR                            N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct:   258 RKRKNSTSSTSNSSAGNNANSTNSKKKSAAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 317

Query:   311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ 367
             ITRLENTQYDA AN +D +  F++SP+ G  +P    P  N  +   S+  +P  SQ
Sbjct:   318 ITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKPPANQETK--SENPTPQASQ 371

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9W676 LDB2 "LIM domain-binding protein 2" [Gallus gallus (taxid:9031)]

 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 245/357 (68%), Positives = 282/357 (78%)

Query:    17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
             RRHTPY  QP+YR+YE+NKRLQ R+E+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query:    77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
             TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct:    79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138

Query:   137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
             TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +LEQL+KNITR G+TN
Sbjct:   139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILPMHAQDPQVLEQLSKNITRMGLTN 198

Query:   195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
              TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++P  KR
Sbjct:   199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257

Query:   255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
             RKR                            N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct:   258 RKRKNSTSSTSNSSAGNNANSTNSKKKSAAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 317

Query:   311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ 367
             ITRLENTQYDA AN +D +  F++SP+ G  +P    P  N  +   S+  +P  SQ
Sbjct:   318 ITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKPPANQETK--SENPTPQASQ 371

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0030274 "LIM domain binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G5E9Y7 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 243/353 (68%), Positives = 283/353 (80%)

Query:    17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
             RRHTPY  QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query:    77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
             TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct:    79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138

Query:   137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
             TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +L+QL+KNITR G+TN
Sbjct:   139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198

Query:   195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
              TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++P  KR
Sbjct:   199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257

Query:   255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
             RKR                            N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct:   258 RKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 317

Query:   311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
             ITRLENTQYDA AN +D +  F++SP+ G  +P    P    P++Q++  ++P
Sbjct:   318 ITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENP 365

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

UNIPROTKB|F6R129 LDB2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
 Identities = 242/353 (68%), Positives = 281/353 (79%)

Query:    17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
             RRHTPY  QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query:    77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
             TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVC
Sbjct:    79 TIGRTLIPRYFSTVFEGGVTDLYYVLKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC 138

Query:   137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
             TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +L+QL+KNITR G+TN
Sbjct:   139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198

Query:   195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
              TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP    +++P  KR
Sbjct:   199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKR 256

Query:   255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
             RKR                            N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct:   257 RKRKNSTSSTSNSSAGNAANSTGSKKKTTAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 316

Query:   311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
             ITRLENTQYDA AN +D +  F++SP+ G  +P    P    P++Q++  ++P
Sbjct:   317 ITRLENTQYDA-ANGMDDEEDFTNSPALGNSSPWNSKP----PATQETKSENP 364

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

UNIPROTKB|O43679 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
 Identities = 243/355 (68%), Positives = 283/355 (79%)

Query:    17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
             RRHTPY  QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query:    77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
             TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct:    79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138

Query:   137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
             TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +L+QL+KNITR G+TN
Sbjct:   139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198

Query:   195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
              TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++P  KR
Sbjct:   199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257

Query:   255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
             RKR                            N SL+SQ  DVMVVGEP+LMGGEFGDEDE
Sbjct:   258 RKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDE 317

Query:   309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
             RLITRLENTQYDA AN +D +  F++SP+ G  +P    P    P++Q++  ++P
Sbjct:   318 RLITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENP 367

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030274 "LIM domain binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q6NVL6 ldb1 "LIM domain-binding protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1276 (454.2 bits), Expect = 4.5e-130, P = 4.5e-130
 Identities = 243/354 (68%), Positives = 277/354 (78%)

Query:    15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
             G+ RHTPY  Q DYR++ELNKRLQ  TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct:    20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79

Query:    75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
             RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN  ++LDCDQCTMVT HGKPM T+
Sbjct:    80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139

Query:   135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
             VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M  QDP ML+QL+KNITR G+
Sbjct:   140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199

Query:   193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
             +NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP +   Q P N
Sbjct:   200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAP-N 258

Query:   253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQDVMVVGEPSLMGGEFGDEDER 309
             KRRKR                            F+L+SQDVMVVGEP+LMGGEFGDEDER
Sbjct:   259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDER 318

Query:   310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
             LITRLENTQ+DA AN +D +  F++SP+ G  +P    P    PSSQ+S  ++P
Sbjct:   319 LITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 367

GO:0005634 "nucleus" evidence=ISS

GO:0030274 "LIM domain binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

UNIPROTKB|F1NI21 LDB1 "LIM domain-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 242/354 (68%), Positives = 278/354 (78%)

Query:    15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
             G+ RHTPY  Q DYR++ELNKRLQ  TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct:    13 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 72

Query:    75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
             RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN  ++LDCDQCTMVT HGKPM T+
Sbjct:    73 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 132

Query:   135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
             VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M  QDP ML+QL+KNITR G+
Sbjct:   133 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 192

Query:   193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
             +NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP +   Q+P+ 
Sbjct:   193 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 251

Query:   253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQDVMVVGEPSLMGGEFGDEDER 309
             KRRKR                            F+L+SQDVMVVGEP+LMGGEFGDEDER
Sbjct:   252 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDER 311

Query:   310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
             LITRLENTQ+DA AN +D +  F++SP+ G  +P    P    PSSQ+S  ++P
Sbjct:   312 LITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 360

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

MGI|MGI:894670 Ldb2 "LIM domain binding 2" [Mus musculus (taxid:10090)]

 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 244/361 (67%), Positives = 283/361 (78%)

Query:    17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
             RRHTPY  QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query:    77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
             TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVC
Sbjct:    79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC 138

Query:   137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
             TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +L+QL+KNITR G+TN
Sbjct:   139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198

Query:   195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
              TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +  +++P  KR
Sbjct:   199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257

Query:   255 RKRXXXXXXXXXXXXXXXXXXXXXX----XXNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
             RKR                            + SLA+Q  DVMVVGEP+LMGGEFGDEDE
Sbjct:   258 RKRKNSTSSTSNSSAGNTTNSAGSKKKTPAASLSLATQVPDVMVVGEPTLMGGEFGDEDE 317

Query:   309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQD--SDKKSPAVS 366
             RLITRLENTQYDA AN +D +  F++SP+ G  +P    P    P++Q+  S+   P  S
Sbjct:   318 RLITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENAPPQAS 372

Query:   367 Q 367
             Q
Sbjct:   373 Q 373

GO:0000989 "transcription factor binding transcription factor activity" evidence=IPI

GO:0001942 "hair follicle development" evidence=IGI

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IDA

GO:0010669 "epithelial structure maintenance" evidence=IGI

GO:0019899 "enzyme binding" evidence=IPI

GO:0030274 "LIM domain binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IGI

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IGI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

UNIPROTKB|F1PRG9 LDB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 241/356 (67%), Positives = 277/356 (77%)

Query:    17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
             RRHTPY  QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct:    19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78

Query:    77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
             TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVC
Sbjct:    79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC 138

Query:   137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
             TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M  QDP +L+QL+KNITR G+TN
Sbjct:   139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198

Query:   195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
              TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP    +++P  KR
Sbjct:   199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKR 256

Query:   255 RKRXXXXXXXXXXXXXXXXXXXXXX----XXNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
             RKR                            N SL+SQ  DVMVVGEP+LMGGEFGDEDE
Sbjct:   257 RKRKNSTSSTSNSSAGNNANSTGSKKKTPAANLSLSSQVPDVMVVGEPTLMGGEFGDEDE 316

Query:   309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAP-DRGPPQGNTPSSQDSDKKSP 363
             RLITRLENTQYDA AN +D +  F+  P+ G  +P    PP      S+ +  ++P
Sbjct:   317 RLITRLENTQYDA-ANGVDDEEDFNSPPALGNSSPWSSKPPAAQETKSESAPPQAP 371

GO:0030274 "LIM domain binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

UNIPROTKB|F1NI09 LDB1 "LIM domain-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
 Identities = 243/357 (68%), Positives = 277/357 (77%)

Query:    15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
             G+ RHTPY  Q DYR++ELNKRLQ  TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct:    20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79

Query:    75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
             RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN  ++LDCDQCTMVT HGKPM T+
Sbjct:    80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139

Query:   135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
             VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M  QDP ML+QL+KNITR G+
Sbjct:   140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199

Query:   193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPA- 251
             +NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPPG  E  R   
Sbjct:   200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPGPAEPARQQP 259

Query:   252 NKRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDE 306
             +KRRKR                            F+L+SQ  DVMVVGEP+LMGGEFGDE
Sbjct:   260 SKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDE 319

Query:   307 DERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
             DERLITRLENTQ+DA AN +D +  F++SP+ G  +P    P    PSSQ+S  ++P
Sbjct:   320 DERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 371

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000972 "transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0009948 "anterior/posterior axis specification" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0021702 "cerebellar Purkinje cell differentiation" evidence=IEA

GO:0022607 "cellular component assembly" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043973 "histone H3-K4 acetylation" evidence=IEA

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046985 "positive regulation of hemoglobin biosynthetic process" evidence=IEA

GO:0060322 "head development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W676	LDB2_CHICK	No assigned EC number	0.7086	0.9455	0.9353	yes	N/A
O73715	LDB1A_DANRE	No assigned EC number	0.6938	0.9318	0.9144	no	N/A
Q86U70	LDB1_HUMAN	No assigned EC number	0.6890	0.9373	0.8369	no	N/A
O55203	LDB2_MOUSE	No assigned EC number	0.6980	0.9400	0.9249	yes	N/A
Q6NVL6	LDB1_XENTR	No assigned EC number	0.7070	0.9373	0.9222	yes	N/A
Q1EQW7	LDB2_XENLA	No assigned EC number	0.6456	0.9373	0.8643	N/A	N/A
O42252	LDB1_CHICK	No assigned EC number	0.7002	0.9373	0.8369	no	N/A
P70662	LDB1_MOUSE	No assigned EC number	0.6890	0.9373	0.8369	no	N/A
P70060	LDB1_XENLA	No assigned EC number	0.7002	0.9373	0.9173	N/A	N/A
O43679	LDB2_HUMAN	No assigned EC number	0.7042	0.9291	0.9142	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	367
pfam01803	230	pfam01803, LIM_bind, LIM-domain binding protein	1e-79

>gnl|CDD|216712 pfam01803, LIM_bind, LIM-domain binding protein

 Score =  243 bits (622), Expect = 1e-79
 Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 35/233 (15%)

Query: 28  YRVYELNKRLQQ-RTEESDNLWWDAFATEFFEDDATLTLTFCLEDGP--KRYTIGRTLIP 84
            R+ E N+ L   R E+ D  +W  F  EFF  DA L  +   EDGP  K++ I    +P
Sbjct: 2   LRLLEFNEHLSNFRGEDDDISYWQRFVHEFFSPDAVLRYSLSSEDGPEGKQFEITTPALP 61

Query: 85  RYFRSIFDGGITELYYNLKHPKE-SFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLIL 143
           RYFR+IF+ G+ EL   L   +E    N SI ++C + + +  +      +V TEG L  
Sbjct: 62  RYFRTIFESGVKELQLVLDGAREQVLPNGSIFVECPKASFIYWYDDGS--QVVTEGTLRA 119

Query: 144 EFTFDDLMRIKSWHFAVRQHRELVPRTIVGM-------------QDPSMLEQL------- 183
              FD  ++I+ W F  R H E +PR+++                + S   QL       
Sbjct: 120 H--FDPDLKIEWWDFCTRSHEEYIPRSVLEPLASPLHTKSKQQSPELSKNSQLRQQKGPQ 177

Query: 184 ------TKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY-ALSPRDCLKT 229
                 + N+TR G+  + + +L +  IL PMQ+LMS  KA   LSPR+ LK 
Sbjct: 178 PITSLPSSNVTRFGLPKAVMRFLEIAEILSPMQDLMSFSKANPILSPREALKQ 230

The LIM-domain binding protein, binds to the LIM domain pfam00412 of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development. The Drosophila protein Chip is required for segmentation and activity of a remote wing margin enhancer. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
KOG2181|consensus	415		100.0
PF01803	240	LIM_bind: LIM-domain binding protein; InterPro: IP	100.0

>KOG2181|consensus

Probab=100.00  E-value=7e-122  Score=884.38  Aligned_cols=349  Identities=65%  Similarity=1.059  Sum_probs=332.7

Q ss_pred             CCCcccCCCCCCCCcchHHHHHHHhhcCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCCCeeeeecccchhhHHHHhhc
Q psy2754          13 CVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFD   92 (367)
Q Consensus        13 ~~~~~~h~p~~gq~~lRL~qfnerL~~~~~~~di~yW~~FV~EFFsp~a~lR~~~~~~~g~K~FEI~~~~LPRyF~t~Fe   92 (367)
                      +||++||.||..+.++||+++|+||+.|.+.+|..|||+|.+|||++||+|+++||.++|+|+|.|++++|||||+++||
T Consensus        37 ~pg~~rh~~y~s~~e~Ri~emNkRLq~~se~sdN~WWDaFstEFFeDDa~Lt~~fclEdgpkRYtIgRtlIPrfFrsIfe  116 (415)
T KOG2181|consen   37 EPGFQRHGNYVSPLEFRIHEMNKRLQIFSEVSDNQWWDAFSTEFFEDDAKLTFVFCLEDGPKRYTIGRTLIPRFFRSIFE  116 (415)
T ss_pred             CCcccccCCCcCcchhhHHHHHHHHHHhcccchhhhHHhhhhhhhcCCceEEEEEEecCCcceeeeccchhHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceeEEeecCCCcccccCCceEEecCCcEEEEeecCCcceEEEeeeeEEEEEecCccceeeeEEEeeccceeeeccccc
Q psy2754          93 GGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIV  172 (367)
Q Consensus        93 SGV~~mqlvLd~prE~l~ng~i~le~~~a~~vt~Y~~~~~~~V~~eG~Lra~F~~d~~lKIe~weF~~~~HeEyIpR~~i  172 (367)
                      +||+++||+|++|+|.|+||.+.+||++|++||+|++|.+++||++|+|.++|.+||+|||++|+|++++|+|+|||++|
T Consensus       117 gG~~eLyyvLkh~ket~hn~s~~~dcdq~~~iTqhgkp~ft~VctegrL~lEF~fDd~MRIK~Wh~~ik~~rElvprsil  196 (415)
T KOG2181|consen  117 GGMRELYYVLKHPKETLHNGSQAYDCDQVLQITQHGKPSFTEVCTEGRLYLEFAFDDVMRIKAWHLEIKRSRELVPRSIL  196 (415)
T ss_pred             cchhhhhhhhcCchhhhcCCceeeeccceeEEeecCCccceeeeccceEEEEeehhhhhhhhheeeeeeccccccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc--C-CChhhhhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q psy2754         173 GM--Q-DPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQR  249 (367)
Q Consensus       173 ~~--Q-sP~~~kql~k~Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf~k~~~LsP~eaLk~~v~qk~Q~~~~p~~~~~~~~  249 (367)
                      +.  + +|+++.|+.|||+++|++++|++||++|+||++||+||+.||++.|+||||||++|||||||||+||+| |+++
T Consensus       197 ~~~a~~dp~~ldq~~kNitR~G~~nsTlNylrlcvILePMQelMSrhKayalsPRdclKttLFQkwQrMvaPp~e-p~~q  275 (415)
T KOG2181|consen  197 QNTADYDPEALDQEQKNITRMGFFNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPPE-PEKQ  275 (415)
T ss_pred             hccCCCChhhhChhhccccccccchhhHHHHHHHHHHhHHHHHHHhccccCCCHHHHHHHHHHHHhhhhhcCCCC-CCCC
Confidence            86  3 899999999999999999999999999999999999999999999999999999999999999999999 5555


Q ss_pred             -chhhhcccCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC--CeEEeecCcccCCCCCCccccceeecccCCCCCc
Q psy2754         250 -PANKRRKRKGSQSGG----AANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAG  322 (367)
Q Consensus       250 -~~~~~r~rk~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~--dvmvvgeps~mgg~~g~eder~itr~en~q~d~~  322 (367)
                       +++||||||+|++++    +++|+++++.|+.+|++.++|++|  ||||||||||||||||||||||||||||||||+ 
T Consensus       276 kp~~KRrkrk~a~~~~~~~~a~nna~~~n~k~~p~~p~~slssQ~pDVMVVGEPtlMGgEFGeeDERlItRlENtQyD~-  354 (415)
T KOG2181|consen  276 KPARKRRKRKAAAAAAAAAAAANNASPANNKQFPPNPMTSLSSQMPDVMVVGEPTLMGGEFGEEDERLITRLENTQYDP-  354 (415)
T ss_pred             CCchhhhhcccccccccccccCCCCCccccccCCCCcchhhhhcCCceEEecCccccccccccchhHHHHhhhccccCc-
Confidence             899999999776553    555677788999999999999999  999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCCCC----CCCCCCC------------CCCCCCCCCCCCCCCC--CCCCCC--CCCC
Q psy2754         323 ANCLDHDPHFSD----SPSWGGG------------APDRGPPQGNTPSSQD--SDKKSP--AVSQ  367 (367)
Q Consensus       323 ~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~~--~~~~  367 (367)
                      +||++++++|+.    ||++|++            +||+++|    |+.|+  ++++.|  ++||
T Consensus       355 ~Ng~~~~n~~~~g~~~sP~~g~np~~~~~~~~~~~sP~n~~p----ps~q~~~~~~~~ps~~asQ  415 (415)
T KOG2181|consen  355 MNGRNMMNQHHPGMQPSPGQGHNPPHSMQMPTSMHSPMNMPP----PSMQGHGGMPPMPSTMASQ  415 (415)
T ss_pred             cccccchhccCCCCCCCccccCCCcchhccccccCCCCCCCC----ccccccCCCCCCCcccccC
Confidence            899999999997    9999999            9999999    77777  666555  8887

>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development

Probab=100.00  E-value=7.8e-59  Score=434.52  Aligned_cols=199  Identities=33%  Similarity=0.625  Sum_probs=184.1

Q ss_pred             cchHHHHHHHhhcC-CCCCchHHHHHHHHHhcCCCCcEEEEEecCCCC---eeeeecccchhhHHHHhhccCceeEEeec
Q psy2754          27 DYRVYELNKRLQQR-TEESDNLWWDAFATEFFEDDATLTLTFCLEDGP---KRYTIGRTLIPRYFRSIFDGGITELYYNL  102 (367)
Q Consensus        27 ~lRL~qfnerL~~~-~~~~di~yW~~FV~EFFsp~a~lR~~~~~~~g~---K~FEI~~~~LPRyF~t~FeSGV~~mqlvL  102 (367)
                      +|||++|+++|+.+ ++.+|++||++||+|||+|+|+|||+++..++.   |+|||++++|||||+++|++||++|+|+|
T Consensus         1 ilRl~~~~~~l~~~~~~~~~~~yW~~fv~~fF~~~a~lr~~~~~~~~~~~~k~FEi~~~~lPR~f~~~~~sGv~~~~~~l   80 (240)
T PF01803_consen    1 ILRLLEFIERLSNFSPNLNDIEYWQKFVHEFFSPDAVLRISLWNEDGNGSPKQFEITRPLLPRYFRTLFESGVKRMQLVL   80 (240)
T ss_pred             CchHHHHHHHHHhhcCCCCcHHHHHHHHHHHcCCCeeEEEEEEcCCCCCCCeeEEEchHHHHHHHHHHhcCCceEEEEEe
Confidence            58999999999999 899999999999999999999999999987776   99999999999999999999999999999


Q ss_pred             CCCccc-ccCCceEEecCCcEEEEeecCCcceEEEeeeeEEEEEecCccceeeeEEEeeccceeeecccccccC------
Q psy2754         103 KHPKES-FHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQ------  175 (367)
Q Consensus       103 d~prE~-l~ng~i~le~~~a~~vt~Y~~~~~~~V~~eG~Lra~F~~d~~lKIe~weF~~~~HeEyIpR~~i~~Q------  175 (367)
                      ++++|. ++||.+++||.+|+++++|.+  +++|+++|+||++|+.+  +|||+|||++++|+|||||++|..+      
T Consensus        81 ~~~~e~~l~ng~i~ie~~~~~~~~~y~~--gs~v~~~G~lr~~f~~~--lKIe~~df~~~~~~e~I~r~~l~~~~~~~~~  156 (240)
T PF01803_consen   81 DGPREQVLPNGSIFIECPRATFIYWYED--GSQVVHEGQLRAQFDPD--LKIEWWDFCTRSHEEYIPRSALEQQASNLHP  156 (240)
T ss_pred             cCCceEEcCCCeEEEEECCEEEEEEECC--ceEEEEEeEEEEEECcc--ccEEEEEEEeecccccCcHHHHHHhhccchh
Confidence            999999 899999999999999999998  56999999999999988  9999999999999999999998762      


Q ss_pred             --------------CChhhhh--hc-------------cCCCCCCCChHHHHHHHHHHHhhhhHHHHHHhhccC-CCHHH
Q psy2754         176 --------------DPSMLEQ--LT-------------KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA-LSPRD  225 (367)
Q Consensus       176 --------------sP~~~kq--l~-------------k~Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf~k~~~-LsP~e  225 (367)
                                    +|.+.++  ..             ++||++|+|+++||||||||||++|++||.|++.++ +||+|
T Consensus       157 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~Lp~~~v~~~Gi~~~~mr~Lqi~evms~M~~Lm~fs~~~~~~sP~e  236 (240)
T PF01803_consen  157 SVQIFQKLSPDQKQSPDMSKNSKARQQKSPQLPPSLPSSNVNEFGIPERVMRCLQIAEVMSQMKDLMSFSKQNNILSPLE  236 (240)
T ss_pred             hhHHhhhcccccccccchhhhhhhhhhcccccCCCcccCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence                          2444333  22             579999999999999999999999999999977655 99999


Q ss_pred             HHHH
Q psy2754         226 CLKT  229 (367)
Q Consensus       226 aLk~  229 (367)
                      ||++
T Consensus       237 aL~~  240 (240)
T PF01803_consen  237 ALEQ  240 (240)
T ss_pred             HhcC
Confidence            9984

Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
1m3v_A	122	Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And		3e-13
2dfy_X	195	Crystal Structure Of A Cyclized Protein Fusion Of L		1e-12
1rut_X	188	Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 L		2e-12
2jtn_A	182	Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Compl		2e-12
2xjy_B	35	Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21		3e-12
2lxd_A	125	Backbone 1h, 13c, And 15n Chemical Shift Assignment		3e-12
2xjz_I	36	Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2		3e-12
1j2o_A	114	Structure Of Flin2, A Complex Containing The N-Term		5e-12

>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The N- Terminal Lim Domain Of Lmo4 Length = 122

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/41 (82%), Positives = 38/41 (92%), Gaps = 1/41 (2%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA AN +D +
Sbjct: 83  DVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE 122

>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim Domains 1 And 2 With The Lim Interacting Domain Of Ldb1 Length = 195

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/47 (76%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDS 335
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA AN +D +   S S
Sbjct: 147 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDETRESGS 192

>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid Domain Length = 188

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%), Gaps = 1/39 (2%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLD 327
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA AN +D
Sbjct: 149 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGID 186

>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex Length = 182

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%), Gaps = 1/39 (2%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLD 327
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA AN +D
Sbjct: 6   DVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGID 43

>pdb|2XJY|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21 Crystal Form Length = 35

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/33 (93%), Positives = 33/33 (100%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDA 321
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA
Sbjct: 3   DVMVVGEPTLMGGEFGDEDERLITRLENTQFDA 35

>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For Lmo2(Lim2)- Ldb1(Lid) Length = 125

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%), Gaps = 1/39 (2%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLD 327
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA AN +D
Sbjct: 86  DVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGID 123

>pdb|2XJZ|I Chain I, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal Form Length = 36

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/33 (93%), Positives = 33/33 (100%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDA 321
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA
Sbjct: 4   DVMVVGEPTLMGGEFGDEDERLITRLENTQFDA 36

>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal Lim Domain Of Lmo2 And Ldb1-Lid Length = 114

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 38/41 (92%), Gaps = 1/41 (2%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA AN +D +
Sbjct: 75  DVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	6e-07
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	7e-06
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	8e-06
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	3e-04

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 114

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 33/42 (78%), Positives = 37/42 (88%), Gaps = 1/42 (2%)

Query: 288 QDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329
            DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA  N +D +
Sbjct: 74  GDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAA-NGIDDE 114

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 122

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 32/40 (80%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 290 VMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329
           VMVVGEP+LMGGEFGDEDERLITRLENTQ+D  AN +D +
Sbjct: 84  VMVVGEPTLMGGEFGDEDERLITRLENTQFD-AANGIDDE 122

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 32/42 (76%), Positives = 34/42 (80%)

Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDP 330
           DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA     D   
Sbjct: 6   DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEGG 47

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 272 APSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329
                         +  DVMVVGEP+LMGGEFGDEDERLITRLENTQ+DA AN +D +
Sbjct: 132 NGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
1rut_X	188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.29
2jtn_A	182	LIM domain-binding protein 1, LIM/homeobox protein	99.22
2l3k_A	123	Rhombotin-2, linker, LIM domain-binding protein 1;	98.92
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	95.99
1j2o_A	114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	93.71

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B

Probab=99.29  E-value=5.8e-13  Score=118.95  Aligned_cols=43  Identities=79%  Similarity=1.222  Sum_probs=28.8

Q ss_pred             CCCCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCC
Q psy2754         286 ASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD  329 (367)
Q Consensus       286 ~~~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~  329 (367)
                      +++||||||||+||||.||++|||+||+|||+|||+ +|+++|+
T Consensus       146 ~~~~v~vvgep~l~g~~~~~~~~r~~~~~~~~q~~~-~~~~~~~  188 (188)
T 1rut_X          146 SGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE  188 (188)
T ss_dssp             --CCCEECCCCEETTCCCCCTTEEECEEEEC-------------
T ss_pred             cCCcccccCCCcccCCCCCCCCCceeeehhhcccCC-ccCCCCC
Confidence            368999999999999999999999999999999999 7998875

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}

Probab=99.22  E-value=9.2e-12  Score=110.50  Aligned_cols=43  Identities=79%  Similarity=1.196  Sum_probs=40.0

Q ss_pred             CCCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCCC
Q psy2754         287 SQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDP  330 (367)
Q Consensus       287 ~~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~~  330 (367)
                      .||||+||||+||||+||++||+||+||||.|||. +|+++++.
T Consensus         4 ~~~~~~~ge~~~~~~~~g~~~~~l~~~l~~~~~~~-~ng~~~~~   46 (182)
T 2jtn_A            4 VPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDEG   46 (182)
T ss_dssp             CCSCEECCCCCCCCCCCCTTTSCCCEEEECSCTTS-SSCSSSSC
T ss_pred             ccccccCCCcccccccccchhHHHHHhhhcccccc-ccCccccc
Confidence            46999999999999999999999999999999999 79997654

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=95.99  E-value=0.0031  Score=52.19  Aligned_cols=45  Identities=76%  Similarity=1.125  Sum_probs=40.9

Q ss_pred             CCCCCCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCC
Q psy2754         284 SLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD  329 (367)
Q Consensus       284 ~~~~~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~  329 (367)
                      ++...+||+.|+|.|.|..|...|+++.=+..|.|+++ .||+|+|
T Consensus        78 ~I~~~~~~~~g~~~l~g~~f~~~~~~~yC~~~~~~~~~-~~g~~~~  122 (122)
T 1m3v_A           78 MGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE  122 (122)
T ss_dssp             CSCCEESSSSSSSSCCSCTTCCTTCCCCEECTTTTTTC-CSCCCCC
T ss_pred             CcCchheEEcCCcCCCCCccEecCCEeEccCcchhchh-hcCCCCC
Confidence            34456899999999999999999999999999999999 8999875

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=93.71  E-value=0.034  Score=45.32  Aligned_cols=41  Identities=83%  Similarity=1.269  Sum_probs=38.8

Q ss_pred             CCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCC
Q psy2754         288 QDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD  329 (367)
Q Consensus       288 ~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~  329 (367)
                      .+||+++++.+.|.+|...|++++=+..|.|+.+ .||+|++
T Consensus        74 ~~~~~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~-~~g~~~~  114 (114)
T 1j2o_A           74 GDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE  114 (114)
T ss_dssp             CSCCCSSCSSTTSSBCCCSSSCCCEEEECTTCCC-TTSSCCC
T ss_pred             CceeEcCCccCCCCeeEEcCCEeecchhhhcccc-ccCCCCC
Confidence            4899999999999999999999999999999999 8999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00