Psyllid ID: psy2807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MNVPADVKDEVDVPVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKPECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLNGVRKTDPLTFGRGTQISSAQFEWCT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHccccccccccHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccHHcccccccccHHHHccccccccEEEEEcccccEEEEEEEEEcccccccccEEEEEEEccEEEEEEEEcccHHHHHHcccccccccccccccccccEEEEEEcccccEEccccEEEEEEEcccccEEEcccccEEEEEEccccccccccEEEEEcccccccccccccccEEEccccEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHccccccccEEEEEEccccEEEEEEEEEccccccccEEEEEEEEcccEEEEEEEccccEEEEEEccccccccccccccccccEEEEEEEEcccEEcccccEEEEEHcEEEEEEEcccccEEEEEEEcccccccccEEEEEEccccccccccccccEEcccEEEEcc
Coil and Loop (DISEMBL)
mnvpadvkdevdvpvnvspphtsavpirstrgwVWIGYIEECLRQLLIKAKDVMenadkiifpksvsaffqgsigepyqgfpkKLQEKVLGSlkdhtldrkpecdlmmedefgpvdrlptriflngpnigeefscefktgdtaYVTTLSISErlndhgertVFFLYNGQLRSVLIRDKNQAKKLKLrskadsdtageigapmpgnIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGvhkvrssnldynfmrplqlslngvrktdpltfgrgtqissaqfewct
Flexible Loop (DISEMBL)
mnvpadvkdevdvpvnvspphtsavpirstrgwVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKPECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDknqakklklrskadsdtageigapmpgNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLNGVRKTDPLTfgrgtqissaqfewct
Low Complexity Region (SEG)
MNVPADVKDEVDVPVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKPECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLNGVRKTDPLTFGRGTQISSAQFEWCT
Disordered region (IsUnstruct)
************************VPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSL**********CDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIR***************************GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLNGVRKTDPLTFGRG************
Disordered Region (DISOPRED)
****ADVKDEVDVPVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQE*************KPECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLI**************************MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLNGV***********TQISSAQFEWCT
Disordered Region (DISEMBL)
********DEVDVPVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKPECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQ*************TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLNGVRKTDPLTFGRGTQISSAQFEWCT
Disordered Region (DISPRO)
*******KDEVDVPVNVSPP*TSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKPECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLNGVRKTDPLTFGRGTQISSAQFEWCT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVPADVKDEVDVPVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKPECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLNGVRKTDPLTFGRGTQISSAQFEWCT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q29RK2	1178	Pyruvate carboxylase, mit	yes	N/A	0.656	0.160	0.380	1e-33
P11498	1178	Pyruvate carboxylase, mit	yes	N/A	0.652	0.159	0.366	3e-33
Q05920	1178	Pyruvate carboxylase, mit	yes	N/A	0.656	0.160	0.380	4e-33
P52873	1178	Pyruvate carboxylase, mit	yes	N/A	0.656	0.160	0.385	5e-33
O17732	1175	Pyruvate carboxylase 1 OS	yes	N/A	0.743	0.182	0.344	2e-31
Q8X1T3	1175	Pyruvate carboxylase OS=P	N/A	N/A	0.670	0.164	0.334	1e-28
Q9UUE1	1185	Pyruvate carboxylase OS=S	yes	N/A	0.725	0.176	0.313	1e-27
Q0CLK1	1193	Pyruvate carboxylase OS=A	N/A	N/A	0.666	0.160	0.327	4e-26
O93918	1193	Pyruvate carboxylase OS=A	N/A	N/A	0.666	0.160	0.327	4e-26
Q9HES8	1192	Pyruvate carboxylase OS=A	yes	N/A	0.666	0.161	0.323	9e-26

>sp|Q29RK2|PYC_BOVIN Pyruvate carboxylase, mitochondrial OS=Bos taurus GN=PC PE=2 SV=2

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 119/231 (51%), Gaps = 42/231 (18%)

Query: 62   FPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSL------------------------KDHT 97
            FP+SV  F QG IG P+ GFP+ L+ KVL  L                        + H 
Sbjct: 940  FPRSVVEFLQGYIGIPHGGFPEPLRSKVLKDLPRVEGRPGASLPPLDLQALEKELTERHG 999

Query: 98   LDRKPECDL---MMED----------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAY 144
             +  PE  L   M  D           FGP+D L TR+FL GP I EEF  E + G T +
Sbjct: 1000 EEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLH 1059

Query: 145  VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPG 204
            +  L+IS+ LN  G+R VFF  NGQLRS+L++D    K++    KA  D  G+IGAPMPG
Sbjct: 1060 IKALAISD-LNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPG 1118

Query: 205  NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG----VHKVRSSNLD 251
             +I++K   G +V K   L V+S MK ET++ +  +G    VH  +   L+
Sbjct: 1119 KVIDIKVAAGAKVTKGQPLCVLSAMKMETVVTSPVEGTVRKVHVTKDMTLE 1169

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate.
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 4EC: .EC: 1EC: .EC: 1

>sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial OS=Homo sapiens GN=PC PE=1 SV=2

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 120/232 (51%), Gaps = 44/232 (18%)

Query: 62   FPKSVSAFFQGSIGEPYQGFPKKLQEKVLG-------------------SLKDHTLDRKP 102
            FP+SV  F QG IG P+ GFP+  + KVL                    +L+   +DR  
Sbjct: 940  FPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHG 999

Query: 103  ECDLMMED-------------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143
            E ++  ED                    FGP+D L TR+FL GP I EEF  E + G T 
Sbjct: 1000 E-EVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTL 1058

Query: 144  YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMP 203
            ++  L++S+ LN  G+R VFF  NGQLRS+L++D    K++    KA  D  G+IGAPMP
Sbjct: 1059 HIKALAVSD-LNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMP 1117

Query: 204  GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG----VHKVRSSNLD 251
            G +I++K   G +V K   L V+S MK ET++ +  +G    VH  +   L+
Sbjct: 1118 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLE 1169

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial OS=Mus musculus GN=Pc PE=1 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 119/231 (51%), Gaps = 42/231 (18%)

Query: 62   FPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSL--------------------KD----HT 97
            FP+SV  F QG IG P+ GFP+  + KVL  L                    KD    H 
Sbjct: 940  FPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHG 999

Query: 98   LDRKPECDL---MMED----------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAY 144
             +  PE  L   M  D           FGP+D L TR+FL GP I EEF  E + G T +
Sbjct: 1000 EEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLH 1059

Query: 145  VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPG 204
            +  L++S+ LN  G+R VFF  NGQLRS+L++D    K++    KA  D  G+IGAPMPG
Sbjct: 1060 IKALAVSD-LNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPG 1118

Query: 205  NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG----VHKVRSSNLD 251
             +I++K   G +V K   L V+S MK ET++ +  +G    VH  +   L+
Sbjct: 1119 KVIDIKVAAGDKVAKGQPLCVLSAMKMETVVTSPMEGTIRKVHVTKDMTLE 1169

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial OS=Rattus norvegicus GN=Pc PE=1 SV=2

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/231 (38%), Positives = 119/231 (51%), Gaps = 42/231 (18%)

Query: 62   FPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSL--------------------KD----HT 97
            FP+SV  F QG IG P+ GFP+  + KVL  L                    KD    H 
Sbjct: 940  FPRSVVEFLQGYIGIPHGGFPEPFRSKVLKDLPRIEGRPGASLPPLNLKELEKDLIDRHG 999

Query: 98   LDRKPECDL---MMED----------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAY 144
             +  PE  L   M  D           FGP+D L TR+FL GP I EEF  E + G T +
Sbjct: 1000 EEVTPEDVLSAAMYPDVFAQFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLH 1059

Query: 145  VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPG 204
            +  L++S+ LN  G+R VFF  NGQLRS+L++D    K++    KA  D  G+IGAPMPG
Sbjct: 1060 IKALAVSD-LNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPG 1118

Query: 205  NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG----VHKVRSSNLD 251
             +I+VK   G +V K   L V+S MK ET++ +  +G    VH  +   L+
Sbjct: 1119 KVIDVKVAAGAKVVKGQPLCVLSAMKMETVVTSPMEGTIRKVHVTKDMTLE 1169

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. Catalyzes in a tissue specific manner, the initial reactions of glucose (liver, kidney) and lipid (adipose tissue, liver, brain) synthesis from pyruvate.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|O17732|PYC1_CAEEL Pyruvate carboxylase 1 OS=Caenorhabditis elegans GN=pyc-1 PE=1 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 132/258 (51%), Gaps = 44/258 (17%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  +  + +++ AD + FPKSV  F QG++G+P  GFP+ L+
Sbjct: 901  IKVTPSSKIVGDLAQFMVQNNLTRETLVDRADDLSFPKSVVDFMQGNVGQPPYGFPEPLR 960

Query: 87   EKVL-GSLKDHTLDRKP-------------------------ECDLM------------- 107
             KVL G  K   +D +P                         E D+M             
Sbjct: 961  TKVLRGKPK---VDGRPGENAKPVDLDAVKVELEEKHGRTLSEEDVMSYSMFPTVFDEFE 1017

Query: 108  -MEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLY 166
                ++GPVD+LPTR+FL G  I EE   E ++G T  +  L+   +LN  GER VFF  
Sbjct: 1018 TFRQQYGPVDKLPTRLFLTGLEIAEEVDVEIESGKTLAIQLLA-EGKLNKRGEREVFFDL 1076

Query: 167  NGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
            NGQ+RS+ + DK  +K++  R +A     G IGAPMPG+++E+K K G +V K   L V+
Sbjct: 1077 NGQMRSIFVVDKEASKEIVTRPRALPGVRGHIGAPMPGDVLELKIKEGDKVTKKQPLFVL 1136

Query: 227  SVMKTETLIHASADGVHK 244
            S MK E +I +   G  K
Sbjct: 1137 SAMKMEMVIDSPIAGTVK 1154

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8X1T3|PYC_PICAN Pyruvate carboxylase OS=Pichia angusta GN=PYC PE=3 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 114/233 (48%), Gaps = 40/233 (17%)

Query: 48   IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP----- 102
            +  KDV   A ++ FP SV  FF+G +G PY GFP+ L+  +L   K   L R+P     
Sbjct: 920  LSPKDVERLASELDFPDSVLDFFEGLMGTPYGGFPEPLRTNILAG-KRRKLTRRPGLELE 978

Query: 103  --------------------ECDLM--------------MEDEFGPVDRLPTRIFLNGPN 128
                                ECD+               +++++G +  LPTR FL  P 
Sbjct: 979  PFDLKKIKEELQSRFGNSITECDVASYNMYPKVFESFKKIQEKYGDLSVLPTRFFLAPPK 1038

Query: 129  IGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRS 188
            + EE S E + G T  +  ++I +     G R V+F +NG++R V + DK  A +   R 
Sbjct: 1039 LNEEISVEIEQGKTFVIKVMAIGDLSPQTGTREVYFEFNGEMRKVTVEDKLAAVETVTRP 1098

Query: 189  KADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
            KAD+    E+GAPM G +IEV+   G +VKK D L V+S MK E +I +   G
Sbjct: 1099 KADAHNPNEVGAPMAGVVIEVRVHPGVEVKKGDPLCVLSAMKMEMVISSPVSG 1151

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.

Pichia angusta (taxid: 870730)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9UUE1|PYC_SCHPO Pyruvate carboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pyr1 PE=3 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 115/246 (46%), Gaps = 37/246 (15%)

Query: 36   IGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKD 95
            +G + + + Q  + A+DV   A  + FP SV  FFQG +G+PY GFP+ L+  VL   + 
Sbjct: 918  VGDLAQFMVQNKLSAEDVENRATTLDFPASVLDFFQGLMGQPYGGFPEPLRTNVLKGRRQ 977

Query: 96   HTLDR-----------------------KPECDL--------------MMEDEFGPVDRL 118
               DR                         +CD+                 D +G +  +
Sbjct: 978  PLTDRPGKFLPAADFDAIRKLLSEKFGVSSDCDIAAYTQFPGVFEEYRQFVDRYGDLTTV 1037

Query: 119  PTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDK 178
            PT+ FL+ P + EE   E   G T  V  +++       G+R V+F  NG+ R V + DK
Sbjct: 1038 PTKFFLSRPEMNEEMHVEIDQGKTLIVKFVALGPLNPRTGQREVYFELNGENRHVTVEDK 1097

Query: 179  NQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHAS 238
              A +   R +AD    G + APM G I+E++ K G +VKK D++ V+S MK E +I A 
Sbjct: 1098 KAAIETVTRPRADPGNPGHVAAPMSGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAP 1157

Query: 239  ADGVHK 244
              GV K
Sbjct: 1158 HSGVLK 1163

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0CLK1|PYC_ASPTN Pyruvate carboxylase OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pyc PE=3 SV=2

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 40/232 (17%)

Query: 48   IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP----- 102
            + A+DV++ A ++ FP SV  F +G +G+P+ GFP+ L+ + L + +   LD++P     
Sbjct: 939  LSAQDVIDRAAELDFPGSVLEFLEGLMGQPFGGFPEPLRSRALRNRR--KLDKRPGLYLE 996

Query: 103  -------------------ECDL--------MMED------EFGPVDRLPTRIFLNGPNI 129
                               E D+        + ED      ++G +  LPTR FL  P I
Sbjct: 997  PLDLAAIKNQIREQFGSATEYDVASYAMYPKVFEDYKKFVQKYGDLSVLPTRYFLAKPEI 1056

Query: 130  GEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSK 189
            GEEF  E + G    +  L+I       G+R VF+  NG++R V I DK  +     R K
Sbjct: 1057 GEEFHVELEKGKMLILKLLAIGPLSEQTGQREVFYEVNGEVRQVSIDDKKASIDNTARPK 1116

Query: 190  ADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
            AD   + ++GAPM G ++E++   G +VKK D L V+S MK E +I A   G
Sbjct: 1117 ADVGDSSQVGAPMSGVVVEIRVHDGLEVKKGDPLAVLSAMKMEMVISAPHSG 1168

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|O93918|PYC_ASPTE Pyruvate carboxylase OS=Aspergillus terreus GN=pyc PE=2 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 40/232 (17%)

Query: 48   IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP----- 102
            + A+DV++ A ++ FP SV  F +G +G+P+ GFP+ L+ + L + +   LD++P     
Sbjct: 939  LSAQDVVDRAAELDFPGSVLEFLEGLMGQPFGGFPEPLRSRALRNRR--KLDKRPGLYLE 996

Query: 103  -------------------ECDL--------MMED------EFGPVDRLPTRIFLNGPNI 129
                               E D+        + ED      ++G +  LPTR FL  P I
Sbjct: 997  PLDLAAIKNQIREQFGSATEYDVASYAMYPKVFEDYKKFVQKYGDLSVLPTRYFLAKPEI 1056

Query: 130  GEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSK 189
            GEEF  E + G    +  L+I       G+R VF+  NG++R V I DK  +     R K
Sbjct: 1057 GEEFHVELEKGKVLILKLLAIGPLSEQTGQREVFYEVNGEVRQVSIDDKKASIDNTARPK 1116

Query: 190  ADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
            AD   + ++GAPM G ++E++   G +VKK D L V+S MK E +I A   G
Sbjct: 1117 ADVGDSSQVGAPMSGVVVEIRVHDGLEVKKGDPLAVLSAMKMEMVISAPHSG 1168

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.

Aspergillus terreus (taxid: 33178)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9HES8|PYC_ASPNG Pyruvate carboxylase OS=Aspergillus niger GN=pyc PE=3 SV=1

 Score =  117 bits (293), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 40/232 (17%)

Query: 48   IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP----- 102
            + A+DV+  A ++ FP SV  F +G +G+PY GFP+ L+ + L   +   LD++P     
Sbjct: 938  LTAEDVIARAGELDFPGSVLEFLEGLMGQPYGGFPEPLRSRALRDRR--KLDKRPGLYLE 995

Query: 103  -------------------ECDL--------MMED------EFGPVDRLPTRIFLNGPNI 129
                               E D+        + ED      +FG +  LPTR FL  P I
Sbjct: 996  PLDLAKIKSQIRENYGAATEYDVASYAMYPKVFEDYKKFVAKFGDLSVLPTRYFLAKPEI 1055

Query: 130  GEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSK 189
            GEEF  E + G    +  L+I       G+R VF+  NG++R V + DK  + +   R K
Sbjct: 1056 GEEFHVELEKGKVLILKLLAIGPLSEQTGQREVFYEVNGEVRQVSVDDKKASVENTARPK 1115

Query: 190  ADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
            A+   + ++GAPM G ++E++   G +VKK D + V+S MK E +I A   G
Sbjct: 1116 AELGDSSQVGAPMSGVVVEIRVHDGLEVKKGDPIAVLSAMKMEMVISAPHSG 1167

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.

Aspergillus niger (taxid: 5061)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
345495993	1180	PREDICTED: pyruvate carboxylase, mitocho	0.774	0.188	0.391	1e-41
345495991	1124	PREDICTED: pyruvate carboxylase, mitocho	0.774	0.198	0.391	1e-41
156540073	1196	PREDICTED: pyruvate carboxylase, mitocho	0.774	0.186	0.391	1e-41
158297962	1196	AGAP004742-PA [Anopheles gambiae str. PE	0.756	0.182	0.393	3e-40
58390932	1180	AGAP004742-PB [Anopheles gambiae str. PE	0.756	0.184	0.393	4e-40
312385557	975	hypothetical protein AND_00634 [Anophele	0.756	0.223	0.389	4e-40
270005615	2284	hypothetical protein TcasGA2_TC007694 [T	0.777	0.098	0.373	7e-40
91080283	2228	PREDICTED: similar to carboxylase:pyruva	0.777	0.100	0.373	7e-40
170032630	1198	pyruvate carboxylase, mitochondrial [Cul	0.756	0.181	0.389	8e-40
328699549	1196	PREDICTED: pyruvate carboxylase, mitocho	0.75	0.180	0.382	2e-39

>gi|345495993|ref|XP_003427616.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 4 [Nasonia vitripennis]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 142/263 (53%), Gaps = 40/263 (15%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  +K  DV+E A+++ FPKSV  F QG+IGEPYQGFP+  +
Sbjct: 907  IKVTPSSKVVGDLAQFMVQNKLKPADVLEKAEELSFPKSVVEFLQGAIGEPYQGFPEPFR 966

Query: 87   EKVL-------------------GSLKDHTLDRKPECD-----------------LMMED 110
             KVL                    +LK    +  P                    L   D
Sbjct: 967  SKVLKDMPRINGRPGESLPPLDFAALKARLQESHPRITDKDVMSAALYPEVTQDYLTFHD 1026

Query: 111  EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
             FGPVD+L TRIFL GP +GEEF    + G T  + TL+++E L  +GER VFF  NGQL
Sbjct: 1027 AFGPVDKLDTRIFLIGPKVGEEFEVTIEKGKTLGIKTLAMAEDLTPNGEREVFFEMNGQL 1086

Query: 171  RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
            RSV I+DK   K+L +  KA  +   +IGAPMPG +I+++ KVG  V+K   L+V+S MK
Sbjct: 1087 RSVFIKDKEAIKELHIHPKASKNDKNQIGAPMPGTVIDIRVKVGDTVEKGAALVVLSAMK 1146

Query: 231  TETLIHASADGVHKVRSSNLDYN 253
             E ++ A   G  K++S  LD N
Sbjct: 1147 MEMVVQAPRAG--KIKS--LDIN 1165

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495991|ref|XP_003427615.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 3 [Nasonia vitripennis]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 142/263 (53%), Gaps = 40/263 (15%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  +K  DV+E A+++ FPKSV  F QG+IGEPYQGFP+  +
Sbjct: 851  IKVTPSSKVVGDLAQFMVQNKLKPADVLEKAEELSFPKSVVEFLQGAIGEPYQGFPEPFR 910

Query: 87   EKVL-------------------GSLKDHTLDRKPECD-----------------LMMED 110
             KVL                    +LK    +  P                    L   D
Sbjct: 911  SKVLKDMPRINGRPGESLPPLDFAALKARLQESHPRITDKDVMSAALYPEVTQDYLTFHD 970

Query: 111  EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
             FGPVD+L TRIFL GP +GEEF    + G T  + TL+++E L  +GER VFF  NGQL
Sbjct: 971  AFGPVDKLDTRIFLIGPKVGEEFEVTIEKGKTLGIKTLAMAEDLTPNGEREVFFEMNGQL 1030

Query: 171  RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
            RSV I+DK   K+L +  KA  +   +IGAPMPG +I+++ KVG  V+K   L+V+S MK
Sbjct: 1031 RSVFIKDKEAIKELHIHPKASKNDKNQIGAPMPGTVIDIRVKVGDTVEKGAALVVLSAMK 1090

Query: 231  TETLIHASADGVHKVRSSNLDYN 253
             E ++ A   G  K++S  LD N
Sbjct: 1091 MEMVVQAPRAG--KIKS--LDIN 1109

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156540073|ref|XP_001600219.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 1 [Nasonia vitripennis] gi|345495988|ref|XP_003427614.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 2 [Nasonia vitripennis]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/263 (39%), Positives = 142/263 (53%), Gaps = 40/263 (15%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  +K  DV+E A+++ FPKSV  F QG+IGEPYQGFP+  +
Sbjct: 923  IKVTPSSKVVGDLAQFMVQNKLKPADVLEKAEELSFPKSVVEFLQGAIGEPYQGFPEPFR 982

Query: 87   EKVL-------------------GSLKDHTLDRKPECD-----------------LMMED 110
             KVL                    +LK    +  P                    L   D
Sbjct: 983  SKVLKDMPRINGRPGESLPPLDFAALKARLQESHPRITDKDVMSAALYPEVTQDYLTFHD 1042

Query: 111  EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
             FGPVD+L TRIFL GP +GEEF    + G T  + TL+++E L  +GER VFF  NGQL
Sbjct: 1043 AFGPVDKLDTRIFLIGPKVGEEFEVTIEKGKTLGIKTLAMAEDLTPNGEREVFFEMNGQL 1102

Query: 171  RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
            RSV I+DK   K+L +  KA  +   +IGAPMPG +I+++ KVG  V+K   L+V+S MK
Sbjct: 1103 RSVFIKDKEAIKELHIHPKASKNDKNQIGAPMPGTVIDIRVKVGDTVEKGAALVVLSAMK 1162

Query: 231  TETLIHASADGVHKVRSSNLDYN 253
             E ++ A   G  K++S  LD N
Sbjct: 1163 MEMVVQAPRAG--KIKS--LDIN 1181

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297962|ref|XP_001689096.1| AGAP004742-PA [Anopheles gambiae str. PEST] gi|157014579|gb|EDO63513.1| AGAP004742-PA [Anopheles gambiae str. PEST]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 138/254 (54%), Gaps = 36/254 (14%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  + A  V+E A+++ FPKSV  F QG+IG P+ GFP+ L+
Sbjct: 923  IKVTPSSKVVGDLAQFMVQNHLTADQVLERAEELSFPKSVVEFLQGAIGTPHGGFPEPLR 982

Query: 87   EKVL-------------------GSLKDHTLDRKPEC---DLM--------------MED 110
             +VL                    +LK    +  P+    D+M                D
Sbjct: 983  SRVLKDMPRIEGRPGAQLAPLDFDALKKSLQESHPDVQDRDVMSAALYPQVTNDFLNFRD 1042

Query: 111  EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
             FGPVD+L TR+FL GP +GEEF    + G T    TL+++E L  +GER VFF  NGQL
Sbjct: 1043 TFGPVDKLNTRVFLTGPKVGEEFEATIEKGKTLGFKTLAMAEDLTANGEREVFFELNGQL 1102

Query: 171  RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
            RSVLIRDK   K+L +  KA      E+GAPMPG++IE+K KVG  V+K   LIV+S MK
Sbjct: 1103 RSVLIRDKEAVKELHIHPKATKGNKNEVGAPMPGSVIEIKVKVGDHVEKGQPLIVLSAMK 1162

Query: 231  TETLIHASADGVHK 244
             E ++ +   GV K
Sbjct: 1163 MEMVVQSPRAGVVK 1176

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58390932|ref|XP_318078.2| AGAP004742-PB [Anopheles gambiae str. PEST] gi|55236884|gb|EAA13216.3| AGAP004742-PB [Anopheles gambiae str. PEST]

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 138/254 (54%), Gaps = 36/254 (14%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  + A  V+E A+++ FPKSV  F QG+IG P+ GFP+ L+
Sbjct: 907  IKVTPSSKVVGDLAQFMVQNHLTADQVLERAEELSFPKSVVEFLQGAIGTPHGGFPEPLR 966

Query: 87   EKVL-------------------GSLKDHTLDRKPEC---DLM--------------MED 110
             +VL                    +LK    +  P+    D+M                D
Sbjct: 967  SRVLKDMPRIEGRPGAQLAPLDFDALKKSLQESHPDVQDRDVMSAALYPQVTNDFLNFRD 1026

Query: 111  EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
             FGPVD+L TR+FL GP +GEEF    + G T    TL+++E L  +GER VFF  NGQL
Sbjct: 1027 TFGPVDKLNTRVFLTGPKVGEEFEATIEKGKTLGFKTLAMAEDLTANGEREVFFELNGQL 1086

Query: 171  RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
            RSVLIRDK   K+L +  KA      E+GAPMPG++IE+K KVG  V+K   LIV+S MK
Sbjct: 1087 RSVLIRDKEAVKELHIHPKATKGNKNEVGAPMPGSVIEIKVKVGDHVEKGQPLIVLSAMK 1146

Query: 231  TETLIHASADGVHK 244
             E ++ +   GV K
Sbjct: 1147 MEMVVQSPRAGVVK 1160

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385557|gb|EFR30026.1| hypothetical protein AND_00634 [Anopheles darlingi]

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 138/254 (54%), Gaps = 36/254 (14%)

Query: 27  IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
           I+ T     +G + + + Q  + A  V++ A+++ FPKSV  F QG+IG P+ GFP+ L+
Sbjct: 702 IKVTPSSKVVGDLAQFMVQNHLSADQVLDRAEELSFPKSVVEFLQGAIGTPHGGFPEPLR 761

Query: 87  EKVL-------------------GSLKDHTLDRKPEC---DLM--------------MED 110
            +VL                    +LK    +  P+    D+M                D
Sbjct: 762 SRVLKDMPRIEGRPGAQLAPLDFDALKSTLQESHPDVRDRDVMSAALYPQVTNDFLNFRD 821

Query: 111 EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
            FGPVD+L TR+FL GP +GEEF    + G T    TL+++E L  +GER VFF  NGQL
Sbjct: 822 SFGPVDKLNTRVFLTGPKVGEEFEVSIEKGKTLGFKTLAMAEDLTTNGEREVFFELNGQL 881

Query: 171 RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
           RSVLIRDK   K+L +  KA      E+GAPMPG++IE+K KVG  V+K   L+V+S MK
Sbjct: 882 RSVLIRDKEAVKELHIHPKAAKGNKNEVGAPMPGSVIEIKVKVGDHVEKGQPLVVLSAMK 941

Query: 231 TETLIHASADGVHK 244
            E ++ A   GV K
Sbjct: 942 MEMVVQAPRAGVVK 955

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005615|gb|EFA02063.1| hypothetical protein TcasGA2_TC007694 [Tribolium castaneum]

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 147/260 (56%), Gaps = 36/260 (13%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  +  +DV+  A+++ FPKSV  + QG IG+PY GFP+ L+
Sbjct: 2011 IKVTPSSKVVGDLAQFMVQNKLSPEDVLNKAEELSFPKSVVEYLQGHIGQPYGGFPEPLR 2070

Query: 87   EKVL-----------------------GSLKD---HTLDRK-------PECD---LMMED 110
             KVL                         LK+   H  DR        P+     L  ++
Sbjct: 2071 SKVLRDMPRIEGRPGASLPPLEFDKLKTDLKETFPHATDRDVMSAALYPQVTNEYLAFKE 2130

Query: 111  EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
            ++GPVD+L TRIFL GP +GEEF    + G T  + TL+++E L ++GER VFF  NG L
Sbjct: 2131 QYGPVDKLDTRIFLVGPKVGEEFEVTIEKGKTLGIKTLAMAEDLTENGEREVFFELNGTL 2190

Query: 171  RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
            RSVLIRDK+  K++ +  KAD     ++GAPMPG +I+++ KVG++V+K   L+++S MK
Sbjct: 2191 RSVLIRDKDAGKEIHVHPKADKANKKQVGAPMPGTVIDIRVKVGEKVEKGTPLVILSAMK 2250

Query: 231  TETLIHASADGVHKVRSSNL 250
             ET++ +   GV K    N+
Sbjct: 2251 METVVQSPIAGVIKTLDVNM 2270

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080283|ref|XP_973877.1| PREDICTED: similar to carboxylase:pyruvate/acetyl-coa/propionyl-coa [Tribolium castaneum]

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 147/260 (56%), Gaps = 36/260 (13%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  +  +DV+  A+++ FPKSV  + QG IG+PY GFP+ L+
Sbjct: 1955 IKVTPSSKVVGDLAQFMVQNKLSPEDVLNKAEELSFPKSVVEYLQGHIGQPYGGFPEPLR 2014

Query: 87   EKVL-----------------------GSLKD---HTLDRK-------PECD---LMMED 110
             KVL                         LK+   H  DR        P+     L  ++
Sbjct: 2015 SKVLRDMPRIEGRPGASLPPLEFDKLKTDLKETFPHATDRDVMSAALYPQVTNEYLAFKE 2074

Query: 111  EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
            ++GPVD+L TRIFL GP +GEEF    + G T  + TL+++E L ++GER VFF  NG L
Sbjct: 2075 QYGPVDKLDTRIFLVGPKVGEEFEVTIEKGKTLGIKTLAMAEDLTENGEREVFFELNGTL 2134

Query: 171  RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
            RSVLIRDK+  K++ +  KAD     ++GAPMPG +I+++ KVG++V+K   L+++S MK
Sbjct: 2135 RSVLIRDKDAGKEIHVHPKADKANKKQVGAPMPGTVIDIRVKVGEKVEKGTPLVILSAMK 2194

Query: 231  TETLIHASADGVHKVRSSNL 250
             ET++ +   GV K    N+
Sbjct: 2195 METVVQSPIAGVIKTLDVNM 2214

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032630|ref|XP_001844183.1| pyruvate carboxylase, mitochondrial [Culex quinquefasciatus] gi|167873013|gb|EDS36396.1| pyruvate carboxylase, mitochondrial [Culex quinquefasciatus]

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/254 (38%), Positives = 139/254 (54%), Gaps = 36/254 (14%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G + + + Q  + A+ VME A+++ FPKSV  F QG+IG P+ GFP+  +
Sbjct: 925  IKVTPSSKVVGDLAQFMVQNHLTAEQVMERAEELSFPKSVIEFLQGAIGTPHGGFPEPFR 984

Query: 87   EKVL-------------------GSLKDHTLDRKP---ECDLM--------------MED 110
             +VL                     LK    +  P   E D+M                D
Sbjct: 985  SRVLKDMPRIEGRPGASLAPLDFDKLKKDLQESHPDVSERDVMSAALYPQVTNDYLNFRD 1044

Query: 111  EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
             FGPVD+L TR+FL GP +GEEF    + G T  + TL+++E L  +GER VFF  NGQL
Sbjct: 1045 SFGPVDKLDTRVFLTGPKVGEEFEVTIEKGKTLGIKTLAMAEDLTANGEREVFFELNGQL 1104

Query: 171  RSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230
            RSVLIRDK   K+L +  KA      ++GAPMPG++IE+K KVG +V+K   L+V+S MK
Sbjct: 1105 RSVLIRDKEAVKELHIHPKATKGNKDQVGAPMPGSVIEIKVKVGDRVEKGQPLVVLSAMK 1164

Query: 231  TETLIHASADGVHK 244
             E ++ +   GV K
Sbjct: 1165 MEMVVQSPRAGVVK 1178

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328699549|ref|XP_003240969.1| PREDICTED: pyruvate carboxylase, mitochondrial-like isoform 2 [Acyrthosiphon pisum]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/256 (38%), Positives = 137/256 (53%), Gaps = 40/256 (15%)

Query: 27   IRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQ 86
            I+ T     +G   + + Q  + A+DV+E A+++ FPKSV  F QG IGEPYQGFP+ L+
Sbjct: 922  IKVTPSSKVVGDFAQFMVQNKLTAEDVLEKAEELSFPKSVIEFLQGGIGEPYQGFPEPLR 981

Query: 87   EKVLGSLKDHTLDRKPECDL-------------------------------MMEDEF--- 112
             KVL  +    +  +P C L                                + DEF   
Sbjct: 982  SKVLKDMP--RIVGRPGCTLPPLDFNKIKSELQEKYQKVSDYDVMSSALYPTVTDEFLTF 1039

Query: 113  ----GPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNG 168
                GPVD+L TRIFL GP +GE F    + G T    TL+ISE L  +GE  VFF  NG
Sbjct: 1040 KEKYGPVDKLDTRIFLTGPKVGENFEVTIEKGKTLAFKTLAISEELTANGEIEVFFEMNG 1099

Query: 169  QLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
            QLRSV IRD   +K++ +  KA     G++GAPMPG++++V+ KVG +V+K   L+V+S 
Sbjct: 1100 QLRSVFIRDNEASKEMHIHPKASKSNKGQVGAPMPGSVMDVRVKVGDKVEKGAPLVVLSA 1159

Query: 229  MKTETLIHASADGVHK 244
            MK E ++ +   G  K
Sbjct: 1160 MKMEMVVQSPIAGTVK 1175

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
ZFIN|ZDB-GENE-090908-3	1181	pcl "pyruvate carboxylase, lik	0.461	0.112	0.496	7e-37
FB|FBgn0027580	1197	CG1516 [Drosophila melanogaste	0.482	0.116	0.446	1.6e-36
UNIPROTKB|E9PS68	298	PC "Pyruvate carboxylase, mito	0.461	0.446	0.466	1.7e-36
MGI|MGI:97520	1178	Pcx "pyruvate carboxylase" [Mu	0.461	0.112	0.459	3.1e-36
ZFIN|ZDB-GENE-000831-1	1181	pc "pyruvate carboxylase" [Dan	0.451	0.110	0.473	4.9e-36
UNIPROTKB|Q29RK2	1178	PC "Pyruvate carboxylase, mito	0.461	0.112	0.474	2.4e-34
UNIPROTKB|F1P6G9	1178	PC "Pyruvate carboxylase" [Can	0.461	0.112	0.474	2.4e-34
UNIPROTKB|P11498	1178	PC "Pyruvate carboxylase, mito	0.461	0.112	0.466	8.1e-34
RGD|3262	1178	Pc "pyruvate carboxylase" [Rat	0.461	0.112	0.466	1e-33
UNIPROTKB|F1RUV5	725	PC "Uncharacterized protein" [	0.454	0.180	0.466	5.4e-32

ZFIN|ZDB-GENE-090908-3 pcl "pyruvate carboxylase, like" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 7.0e-37, Sum P(2) = 7.0e-37
 Identities = 67/135 (49%), Positives = 90/135 (66%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGPVD L TR+FL+GP I EEF  E + G T ++  L++ + LN  G+R VFF  NGQLR
Sbjct:  1029 FGPVDCLDTRLFLDGPKIAEEFEVELERGKTLHIKALALGD-LNKAGQREVFFELNGQLR 1087

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             SVL++D    K++    KA  D  G+IGAPMPG ++EVK K GQQV+K   L V+S MK 
Sbjct:  1088 SVLVKDTVAMKEMHFHPKALKDVRGQIGAPMPGKVVEVKVKQGQQVEKGQPLCVLSAMKM 1147

Query:   232 ETLIHASADG-VHKV 245
             ET++++   G V K+
Sbjct:  1148 ETVVNSPISGTVAKI 1162

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004736 "pyruvate carboxylase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0027580 CG1516 [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
 Identities = 62/139 (44%), Positives = 88/139 (63%)

Query:   106 LMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFL 165
             L   +++GPVD+L TRIFL GP +GEEF    + G T  V  L++S  L  +G R VFF 
Sbjct:  1039 LNFREKYGPVDKLDTRIFLTGPKVGEEFDVPLERGKTLSVKALAVSADLKPNGIREVFFE 1098

Query:   166 YNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIV 225
              NGQLR+V I DK   K++ +  KA+     E+GAPMPG +I+++ KVG +V+K   L+V
Sbjct:  1099 LNGQLRAVHILDKEAVKEIHVHPKANKSNKSEVGAPMPGTVIDIRVKVGDKVEKGQPLVV 1158

Query:   226 MSVMKTETLIHASADGVHK 244
             +S MK E ++ +   GV K
Sbjct:  1159 LSAMKMEMVVQSPLAGVVK 1177

GO:0004736 "pyruvate carboxylase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006090 "pyruvate metabolic process" evidence=ISS

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|E9PS68 PC "Pyruvate carboxylase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 63/135 (46%), Positives = 87/135 (64%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGP+D L TR+FL GP I EEF  E + G T ++  L++S+ LN  G+R VFF  NGQLR
Sbjct:   147 FGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLR 205

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             S+L++D    K++    KA  D  G+IGAPMPG +I++K   G +V K   L V+S MK 
Sbjct:   206 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKM 265

Query:   232 ETLIHASADG-VHKV 245
             ET++ +  +G V KV
Sbjct:   266 ETVVTSPMEGTVRKV 280

GO:0003677 "DNA binding" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0004736 "pyruvate carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0009374 "biotin binding" evidence=IEA

MGI|MGI:97520 Pcx "pyruvate carboxylase" [Mus musculus (taxid:10090)]

 Score = 315 (115.9 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
 Identities = 62/135 (45%), Positives = 87/135 (64%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGP+D L TR+FL GP I EEF  E + G T ++  L++S+ LN  G+R VFF  NGQLR
Sbjct:  1027 FGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLR 1085

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             S+L++D    K++    KA  D  G+IGAPMPG +I++K   G +V K   L V+S MK 
Sbjct:  1086 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVAAGDKVAKGQPLCVLSAMKM 1145

Query:   232 ETLIHASADG-VHKV 245
             ET++ +  +G + KV
Sbjct:  1146 ETVVTSPMEGTIRKV 1160

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0004736 "pyruvate carboxylase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006090 "pyruvate metabolic process" evidence=ISO

GO:0006094 "gluconeogenesis" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009374 "biotin binding" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-000831-1 pc "pyruvate carboxylase" [Danio rerio (taxid:7955)]

 Score = 323 (118.8 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
 Identities = 62/131 (47%), Positives = 87/131 (66%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGPVD L TR+FL+GP I EEF  E + G   ++  L++ + LN  G+R VFF  NGQLR
Sbjct:  1029 FGPVDCLNTRLFLDGPKIAEEFQVELERGKILHIKALALGD-LNKSGQREVFFELNGQLR 1087

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             SVL++D    K++    KA  D  G++GAPMPG ++EVK K GQ+V+K   L V+S MK 
Sbjct:  1088 SVLVKDTAAMKEMHFHPKALKDVRGQVGAPMPGKVVEVKVKAGQKVEKGQPLCVLSAMKM 1147

Query:   232 ETLIHASADGV 242
             ET++++   G+
Sbjct:  1148 ETVVNSPISGI 1158

GO:0016874 "ligase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004736 "pyruvate carboxylase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q29RK2 PC "Pyruvate carboxylase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 64/135 (47%), Positives = 87/135 (64%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGP+D L TR+FL GP I EEF  E + G T ++  L+IS+ LN  G+R VFF  NGQLR
Sbjct:  1027 FGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAISD-LNRAGQRQVFFELNGQLR 1085

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             S+L++D    K++    KA  D  G+IGAPMPG +I++K   G +V K   L V+S MK 
Sbjct:  1086 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVAAGAKVTKGQPLCVLSAMKM 1145

Query:   232 ETLIHASADG-VHKV 245
             ET++ +  +G V KV
Sbjct:  1146 ETVVTSPVEGTVRKV 1160

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004736 "pyruvate carboxylase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1P6G9 PC "Pyruvate carboxylase" [Canis lupus familiaris (taxid:9615)]

 Score = 316 (116.3 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 64/135 (47%), Positives = 87/135 (64%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGP+D L TR+FL GP I EEF  E + G T ++  L+IS+ LN  G+R VFF  NGQLR
Sbjct:  1027 FGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAISD-LNRAGQRQVFFELNGQLR 1085

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             S+L++D    K++    KA  D  G+IGAPMPG +I++K   G +V K   L V+S MK 
Sbjct:  1086 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVAAGAKVAKGQPLCVLSAMKM 1145

Query:   232 ETLIHASADG-VHKV 245
             ET++ +  +G V KV
Sbjct:  1146 ETVVTSPMEGTVRKV 1160

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004736 "pyruvate carboxylase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|P11498 PC "Pyruvate carboxylase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 8.1e-34, Sum P(2) = 8.1e-34
 Identities = 63/135 (46%), Positives = 87/135 (64%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGP+D L TR+FL GP I EEF  E + G T ++  L++S+ LN  G+R VFF  NGQLR
Sbjct:  1027 FGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLR 1085

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             S+L++D    K++    KA  D  G+IGAPMPG +I++K   G +V K   L V+S MK 
Sbjct:  1086 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKM 1145

Query:   232 ETLIHASADG-VHKV 245
             ET++ +  +G V KV
Sbjct:  1146 ETVVTSPMEGTVRKV 1160

GO:0003677 "DNA binding" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0009374 "biotin binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0004736 "pyruvate carboxylase activity" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|3262 Pc "pyruvate carboxylase" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
 Identities = 63/135 (46%), Positives = 87/135 (64%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGP+D L TR+FL GP I EEF  E + G T ++  L++S+ LN  G+R VFF  NGQLR
Sbjct:  1027 FGPLDSLNTRLFLQGPKIAEEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLR 1085

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             S+L++D    K++    KA  D  G+IGAPMPG +I+VK   G +V K   L V+S MK 
Sbjct:  1086 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDVKVAAGAKVVKGQPLCVLSAMKM 1145

Query:   232 ETLIHASADG-VHKV 245
             ET++ +  +G + KV
Sbjct:  1146 ETVVTSPMEGTIRKV 1160

GO:0003677 "DNA binding" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0004736 "pyruvate carboxylase activity" evidence=IMP;IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=IEA;IDA

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0009374 "biotin binding" evidence=IMP

GO:0031406 "carboxylic acid binding" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RUV5 PC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 5.4e-32, Sum P(2) = 5.4e-32
 Identities = 63/135 (46%), Positives = 84/135 (62%)

Query:   112 FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLR 171
             FGP+D L TR+FL GP I EEF  E + G  A    L+IS+ LN  G+R V F  NGQLR
Sbjct:   576 FGPLDSLSTRLFLQGPKIAEEFEVELERGKKAS-KPLAISD-LNP-GKRQVLFELNGQLR 632

Query:   172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
             S+L++D    K++    KA  D  G+IGAPMPG +I++K   G +V K   L V+S MK 
Sbjct:   633 SILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKM 692

Query:   232 ETLIHASADG-VHKV 245
             ET++ +  +G V KV
Sbjct:   693 ETVVTSPMEGTVRKV 707

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004736 "pyruvate carboxylase activity" evidence=IEA

GO:0004075 "biotin carboxylase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.4.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	288
COG1038	1149	COG1038, PycA, Pyruvate carboxylase [Energy produc	2e-52
TIGR01235	1143	TIGR01235, pyruv_carbox, pyruvate carboxylase	1e-51
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	3e-51
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	3e-15
pfam02436	198	pfam02436, PYC_OADA, Conserved carboxylase domain	6e-14
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	2e-11
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	7e-11
PRK14040	593	PRK14040, PRK14040, oxaloacetate decarboxylase; Pr	7e-11
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	7e-10
TIGR01108	582	TIGR01108, oadA, oxaloacetate decarboxylase alpha	1e-08
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	2e-08
PRK14042	596	PRK14042, PRK14042, pyruvate carboxylase subunit B	8e-08
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	3e-06
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	2e-05
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	6e-05
pfam13533	50	pfam13533, Biotin_lipoyl_2, Biotin-lipoyl like	5e-04
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	0.003

>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion]

 Score =  184 bits (468), Expect = 2e-52
 Identities = 82/230 (35%), Positives = 114/230 (49%), Gaps = 38/230 (16%)

Query: 50   AKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT------------ 97
             +DV  +A+ + FP SV +FF+G +G+P  GFP+ LQ+KVL   +  T            
Sbjct: 898  EEDVENDANDLDFPDSVVSFFRGELGQPPGGFPEPLQKKVLKGREPLTDRPGELLEPADF 957

Query: 98   ----------LDRKP-ECD----LM----------MEDEFGPVDRLPTRIFLNGPNIGEE 132
                      L R+  + D    L+            + +G V  LPT  F  G   GEE
Sbjct: 958  EAIRKELEEKLGREVSDQDVASYLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLRPGEE 1017

Query: 133  FSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADS 192
               E + G T  +   +I E  ++ G RTV+F  NGQ R + ++D++    +  R KAD 
Sbjct: 1018 IEVEIEKGKTLIIKLQAIGE-PDEKGMRTVYFELNGQPREIKVKDRSVGSSVVARRKADP 1076

Query: 193  DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
               G IGAPMPG ++EVK K G +VKK DVL V+  MK ET I A  DG 
Sbjct: 1077 GNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGT 1126

Length = 1149

>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase

 Score =  181 bits (461), Expect = 1e-51
 Identities = 82/233 (35%), Positives = 111/233 (47%), Gaps = 40/233 (17%)

Query: 50   AKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVL----------GSL------ 93
              DV+E A+++ FP SV  F +G IG+P+ GFP+ LQ+KVL          GSL      
Sbjct: 893  VDDVVEPAEELSFPDSVVEFLKGDIGQPHGGFPEPLQKKVLKGEKPITVRPGSLLEPADL 952

Query: 94   --------KDHTLDRKPECDLM--------------MEDEFGPVDRLPTRIFLNGPNIGE 131
                    + H  +   + D+                 D +GPV  LPT  F  G   GE
Sbjct: 953  DAIRKDLQEKHEREVS-DFDVASYAMYPKVFTDFAKARDTYGPVSVLPTPAFFYGLADGE 1011

Query: 132  EFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKAD 191
            E   + + G T  +   ++    +  GER VFF  NGQ R + + D++   +  +R KAD
Sbjct: 1012 EIEVDIEKGKTLIIKLQAVGA-TDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKAD 1070

Query: 192  SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHK 244
                  +GAPMPG IIEVK   GQ V K D L+V+  MK ET I A  DG  K
Sbjct: 1071 PGNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIK 1123

This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score =  180 bits (460), Expect = 3e-51
 Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 40/231 (17%)

Query: 50   AKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVL------------------- 90
             +DV E  + + FP SV +F +G +G+P  GFP+ LQ+KVL                   
Sbjct: 895  PEDVYEPGEDLDFPDSVVSFLKGELGQPPGGFPEPLQKKVLKGEEPITVRPGELLEPVDF 954

Query: 91   ----GSLKDHTLDRKP-ECDLMM--------------EDEFGPVDRLPTRIFLNGPNIGE 131
                  L++  L R+  + D++                +E+G V  LPT  F  G   GE
Sbjct: 955  EAERAELEEK-LGREVTDRDVLSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGE 1013

Query: 132  EFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKAD 191
            E   E + G T  +   +I E  ++ G RTV+F  NGQ R V +RD++    +  R KAD
Sbjct: 1014 EIEVEIEPGKTLIIKLEAIGE-PDEDGMRTVYFELNGQPREVQVRDRSVKSTVAAREKAD 1072

Query: 192  SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
                G +GAPMPG+++ V  K G +VK  D L V+  MK ET I A  DG 
Sbjct: 1073 PGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGT 1123

Length = 1146

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 68.6 bits (169), Expect = 3e-15
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           E+ APMPG +++V  K G +V+    L V+  MK E  + A   GV
Sbjct: 1   EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGV 46

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|217032 pfam02436, PYC_OADA, Conserved carboxylase domain

 Score = 68.7 bits (169), Expect = 6e-14
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 37/128 (28%)

Query: 52  DVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLG-------------------- 91
             +       FPKSV  + +G  G+P  GFP++LQ+KVL                     
Sbjct: 67  TPVGEGRYKDFPKSVVDYLKGEYGQPPGGFPEELQKKVLKGEEPITCRPADLLEPVDLEK 126

Query: 92  ---SLKDHTLDRKPECDLM--------------MEDEFGPVDRLPTRIFLNGPNIGEEFS 134
               L++    +  + D++                +E+G V  LPT +F  G  +GEE+S
Sbjct: 127 LRAELEEKAGRKLSDEDVLSYALFPKVAEKFLEHREEYGDVSVLPTPVFFYGMEVGEEYS 186

Query: 135 CEFKTGDT 142
            E + G T
Sbjct: 187 VEVEPGKT 194

This domain represents a conserved region in pyruvate carboxylase (PYC), oxaloacetate decarboxylase alpha chain (OADA), and transcarboxylase 5s subunit. The domain is found adjacent to the HMGL-like domain (pfam00682) and often close to the biotin_lipoyl domain (pfam00364) of biotin requiring enzymes. Length = 198

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           +K  + ++GE+ APMPG ++ V  K GQ+V   D+L+V+  MK E  + A  DGV
Sbjct: 568 AKVAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGV 622

Length = 645

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 62.2 bits (152), Expect = 7e-11
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 157 HGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQ 216
            G+R  +   +G    V++    +        +  +   G + +PMPG +++VK K G +
Sbjct: 487 EGKRPFYLRVDGMPEEVVVEPLKEIVVGG---RPRASAPGAVTSPMPGTVVKVKVKEGDK 543

Query: 217 VKKNDVLIVMSVMKTETLIHASADGV 242
           VK  D ++V+  MK E  I A  DG 
Sbjct: 544 VKAGDTVLVLEAMKMENEIQAPVDGT 569

Length = 592

>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 188 SKADSDTAGE-IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           + A +  AGE + AP+ GNI +V    GQ V + DVL+++  MK ET I A+  G 
Sbjct: 516 AAAPAAAAGEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGT 571

Length = 593

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 20/71 (28%), Positives = 30/71 (42%)

Query: 172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
           S        A      + A +    ++ +PM G + +   +VG  VK    L ++  MK 
Sbjct: 47  SPSAAAAQPAASAPAPAPAAAAGGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKM 106

Query: 232 ETLIHASADGV 242
           E  I A ADGV
Sbjct: 107 ENEIEAPADGV 117

Length = 140

>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 28/207 (13%)

Query: 64  KSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDR-----KPECDLMMEDEFGPVDRL 118
           K    + +G  G        +LQ K+LG  K     R     +PE D +  +        
Sbjct: 358 KETKGYLKGEYGRTPAPINAELQRKILGDEKPIVDCRPADLLEPELDKLRAEVREAGAEK 417

Query: 119 PT--------------RIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFF 164
            +                FL   +    F  + +           + +    H   +   
Sbjct: 418 NSIEDVLTYALFPQVGLKFLENRHNPAAFEPKPEEKVIEQEHAQVVGKYEETHASGSYTV 477

Query: 165 LYNGQLRSVLIRDKNQAKKLKLRSKADSDTA---------GEIGAPMPGNIIEVKAKVGQ 215
              G+   V +       ++   + A++              + AP+ G+I++VK   GQ
Sbjct: 478 EVEGKAFVVKVSPGGDVSQITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQ 537

Query: 216 QVKKNDVLIVMSVMKTETLIHASADGV 242
            V + +VL+++  MK ET I A+A G 
Sbjct: 538 TVAEGEVLLILEAMKMETEIKAAAAGT 564

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 197 EIGAPMPGNII-----EVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           EI +PM G  +     E   KVG +VK   VL  +  MK E  I A   GV
Sbjct: 2   EIKSPMIGESVKEGTAEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGV 52

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional

 Score = 52.8 bits (126), Expect = 8e-08
 Identities = 26/87 (29%), Positives = 46/87 (52%)

Query: 156 DHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQ 215
           +HG+++ F   +G    V+++      K++  S  +    G+I   +PG+II +    G 
Sbjct: 486 EHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSAGD 545

Query: 216 QVKKNDVLIVMSVMKTETLIHASADGV 242
           +VK    ++V+  MK ET I A A+GV
Sbjct: 546 EVKAGQAVLVIEAMKMETEIKAPANGV 572

Length = 596

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 195 AGE--IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHK 244
           AGE  + APMPG I+ +  + GQQVK    L+++  MK E  I A  DGV K
Sbjct: 82  AGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVK 133

Length = 153

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
           A  + +PMPG I++V   VG QV +N  L+++  MK E  I AS+ G
Sbjct: 61  ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAG 107

Length = 130

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 192  SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG-VHKVRSSNL 250
             + A ++ +   GN  +V  +VG +V+    L+++  MK E  + A   G V K+     
Sbjct: 1129 PEGAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPG 1188

Query: 251  DY 252
            D 
Sbjct: 1189 DM 1190

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|205711 pfam13533, Biotin_lipoyl_2, Biotin-lipoyl like

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227
            I  P+ G ++ V  K GQ VKK DVL  + 
Sbjct: 4   NIAPPVSGRVVAVNVKEGQSVKKGDVLFTLD 34

Length = 50

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 197 EIGAPMP------GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
            I  P        G +++   KVG +VKK DVL  +  MK  + + A   G
Sbjct: 1   TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSG 51

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	100.0
KOG0369|consensus	1176		100.0
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	100.0
PRK12999	1146	pyruvate carboxylase; Reviewed	100.0
PRK14042	596	pyruvate carboxylase subunit B; Provisional	100.0
PRK09282	592	pyruvate carboxylase subunit B; Validated	100.0
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	100.0
PRK14040	593	oxaloacetate decarboxylase; Provisional	100.0
PF02436	196	PYC_OADA: Conserved carboxylase domain; InterPro:	99.97
PRK12330	499	oxaloacetate decarboxylase; Provisional	99.89
PRK14041	467	oxaloacetate decarboxylase; Provisional	99.88
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	99.88
PRK12331	448	oxaloacetate decarboxylase; Provisional	99.88
PRK12581	468	oxaloacetate decarboxylase; Provisional	99.87
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	99.87
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.84
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.81
KOG0238|consensus	670		99.8
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.77
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.75
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.69
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.67
PRK06748	83	hypothetical protein; Validated	99.65
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.6
PRK07051	80	hypothetical protein; Validated	99.57
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.56
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.54
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.51
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.44
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.4
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.35
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.3
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.3
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.17
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.08
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.07
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.05
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.02
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.97
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.96
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	98.94
KOG0368|consensus	2196		98.9
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	98.9
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.9
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.87
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.87
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	98.74
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	98.66
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	98.63
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	98.58
PRK09783	409	copper/silver efflux system membrane fusion protei	98.5
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	98.5
PRK13380	144	glycine cleavage system protein H; Provisional	98.49
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.45
KOG0559|consensus	457		98.43
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	98.42
PRK10476	346	multidrug resistance protein MdtN; Provisional	98.34
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	98.33
KOG0557|consensus	470		98.33
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.29
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	98.28
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	98.26
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	98.21
PRK15136	390	multidrug efflux system protein EmrA; Provisional	98.2
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	98.19
PRK03598	331	putative efflux pump membrane fusion protein; Prov	98.17
PRK09859	385	multidrug efflux system protein MdtE; Provisional	98.14
PRK00624	114	glycine cleavage system protein H; Provisional	98.07
PRK11578	370	macrolide transporter subunit MacA; Provisional	98.04
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	98.02
PRK01202	127	glycine cleavage system protein H; Provisional	98.0
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.97
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.82
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.81
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	97.66
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.53
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.46
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	97.45
PRK12784	84	hypothetical protein; Provisional	97.45
KOG0558|consensus	474		97.39
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.24
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	97.22
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	97.2
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	97.19
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	97.18
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	96.98
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.96
PRK07051	80	hypothetical protein; Validated	96.95
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	96.82
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	96.71
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	96.68
PRK06748	83	hypothetical protein; Validated	96.57
PF13437	105	HlyD_3: HlyD family secretion protein	96.53
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	96.5
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	96.48
PRK14040	593	oxaloacetate decarboxylase; Provisional	96.38
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	96.35
COG3608	331	Predicted deacylase [General function prediction o	96.34
PF00529	305	HlyD: HlyD family secretion protein the correspond	96.32
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	96.3
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	96.26
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	96.09
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	96.0
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	95.85
PRK12999	1146	pyruvate carboxylase; Reviewed	95.75
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	95.64
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	95.64
PRK09282	592	pyruvate carboxylase subunit B; Validated	95.62
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	95.59
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.29
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	95.23
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	95.11
PF13437	105	HlyD_3: HlyD family secretion protein	95.1
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	95.09
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	95.05
PRK14042	596	pyruvate carboxylase subunit B; Provisional	94.87
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	94.78
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.67
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	94.32
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	94.25
PF06898	385	YqfD: Putative stage IV sporulation protein YqfD;	94.08
PRK09439	169	PTS system glucose-specific transporter subunit; P	93.88
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	93.84
COG2190	156	NagE Phosphotransferase system IIA components [Car	93.61
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	93.59
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	93.44
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	93.42
PRK09439	169	PTS system glucose-specific transporter subunit; P	93.26
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	93.17
TIGR02876	382	spore_yqfD sporulation protein YqfD. YqfD is part	93.13
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	92.88
PRK10476	346	multidrug resistance protein MdtN; Provisional	92.75
PRK15136	390	multidrug efflux system protein EmrA; Provisional	92.72
PRK11578	370	macrolide transporter subunit MacA; Provisional	92.72
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	92.69
COG2190	156	NagE Phosphotransferase system IIA components [Car	92.55
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	92.53
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	92.45
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	92.38
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	92.23
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	92.04
PRK09859	385	multidrug efflux system protein MdtE; Provisional	92.02
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	91.96
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	91.95
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	91.93
KOG3373|consensus	172		91.88
KOG0559|consensus	457		91.86
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	91.82
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.8
PRK09783	409	copper/silver efflux system membrane fusion protei	91.8
PRK03598	331	putative efflux pump membrane fusion protein; Prov	91.71
PRK05035	695	electron transport complex protein RnfC; Provision	91.69
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	91.67
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	91.62
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	91.62
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	91.55
COG4072	161	Uncharacterized protein conserved in archaea [Func	91.17
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	90.85
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	90.85
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	90.67
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	89.83
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	89.64
PF01551	96	Peptidase_M23: Peptidase family M23; InterPro: IPR	88.85
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	88.59
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	88.55
PRK10255	648	PTS system N-acetyl glucosamine specific transport	88.18
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	88.16
PRK09824	627	PTS system beta-glucoside-specific transporter sub	88.08
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	87.52
PRK10255	648	PTS system N-acetyl glucosamine specific transport	87.31
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	87.25
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	86.78
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	86.77
PRK09824	627	PTS system beta-glucoside-specific transporter sub	86.53
PRK05305	206	phosphatidylserine decarboxylase; Provisional	86.19
PRK12784	84	hypothetical protein; Provisional	85.42
KOG0369|consensus	1176		84.48
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	83.25
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	82.51
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	82.46
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	82.1
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	81.57
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	81.52
PRK05305	206	phosphatidylserine decarboxylase; Provisional	80.99
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	80.63
PRK03934	265	phosphatidylserine decarboxylase; Provisional	80.07

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=100.00  E-value=9.3e-61  Score=479.35  Aligned_cols=241  Identities=34%  Similarity=0.515  Sum_probs=226.0

Q ss_pred             CCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc-----
Q psy2807          22 TSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH-----   96 (288)
Q Consensus        22 ~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i-----   96 (288)
                      =+|||||||||||+|||+|+|||+|.||.+++.++++.++||+||++||+|.+||||+|||++||+++|+|++|+     
T Consensus       870 mfGdivKVTPSSKVVGDmAl~MV~n~Lt~~dv~~~~~~l~fPdSVv~ff~G~lGqP~gGfPe~Lqk~vLkg~~p~t~Rpg  949 (1149)
T COG1038         870 MFGDIVKVTPSSKVVGDLALFMVQNDLTEEDVENDANDLDFPDSVVSFFRGELGQPPGGFPEPLQKKVLKGREPLTDRPG  949 (1149)
T ss_pred             HhCCceEecccchhHHHHHHHHHhcCCCHHHHhcccccCCCcHHHHHHhhcccCCCCCCCCHHHHHHHhcCCCccccCcc
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999888     


Q ss_pred             --------------cccc----CCccccee--------------ecccCCCCCCCcccccCCCCCCceeeeeecCCceEE
Q psy2807          97 --------------TLDR----KPECDLMM--------------EDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAY  144 (288)
Q Consensus        97 --------------L~~~----~~deDvL~--------------~a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~  144 (288)
                                    |+++    .++.|++.              ...||++++|||+.|||||..||+++++++.||++.
T Consensus       950 ~~l~~~d~~a~r~~l~~~~~~~~~d~d~~sy~lyPkvf~dy~~~~~~yGd~S~L~t~~ff~gm~~gEe~~v~ie~GktLi 1029 (1149)
T COG1038         950 ELLEPADFEAIRKELEEKLGREVSDQDVASYLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLRPGEEIEVEIEKGKTLI 1029 (1149)
T ss_pred             ccCCccchHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHHhcCCccccCcchhhccCCCCceEEEEecCCcEEE
Confidence                          1112    46777773              445899999999999999999999999999999999


Q ss_pred             EEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEE
Q psy2807         145 VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLI  224 (288)
Q Consensus       145 v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~  224 (288)
                      |++.+++ ++++.|.++++|++||+.|++.|+|.+.......++||+.+|+++|.|||||+|+++.|++||.|++||+|+
T Consensus      1030 i~l~aig-e~d~~G~r~v~felNGq~R~i~v~Drs~~~~~~~r~KAd~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~ 1108 (1149)
T COG1038        1030 IKLQAIG-EPDEKGMRTVYFELNGQPREIKVKDRSVGSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLA 1108 (1149)
T ss_pred             EEecccC-CCCcCCcEEEEEEeCCceeeeeecccccccccccccccCCCCccccCCCCCCceEEEEEccCCeecCCCeee
Confidence            9999999 999999999999999999999999987666666778999999999999999999999999999999999999


Q ss_pred             EEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         225 VMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       225 ~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ++||||||+.|.||+||+|.+++|+.||+|.. ++|.+++
T Consensus      1109 ~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1109 VIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             ehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            99999999999999999999999999999999 9998875

>KOG0369|consensus

Probab=100.00  E-value=4.3e-57  Score=446.44  Aligned_cols=243  Identities=40%  Similarity=0.647  Sum_probs=228.0

Q ss_pred             CCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc-----
Q psy2807          22 TSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH-----   96 (288)
Q Consensus        22 ~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i-----   96 (288)
                      -+|||||||||||||||+|+|||+|.|+++++.+|+.+++||+||++||+|++|+|++||||+|+.++|+|++.+     
T Consensus       897 lLGDiiKVTPsSKvVGDLAQFMVqN~Lt~~~~~~rA~~LsFP~SVvdf~qG~iGqP~gGFPEPlRs~VLk~~~r~~gRPG  976 (1176)
T KOG0369|consen  897 LLGDIIKVTPSSKVVGDLAQFMVQNKLTRDDVERRAEELSFPKSVVDFFQGLIGQPYGGFPEPLRSKVLKGKPRLTGRPG  976 (1176)
T ss_pred             HhhCeeeeccchhhHHHHHHHHHhcCCCHHHHHHHhhhcCCcHHHHHHHhcccCCCCCCCCchhHHHHhcCCCccCCCCC
Confidence            489999999999999999999999999999999999999999999999999999999999999999999987655     


Q ss_pred             --------------cccc---CCcccce--------------eecccCCCCCCCcccccCCCCCCceeeeeecCCceEEE
Q psy2807          97 --------------TLDR---KPECDLM--------------MEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYV  145 (288)
Q Consensus        97 --------------L~~~---~~deDvL--------------~~a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~v  145 (288)
                                    |.++   .+++||+              |++.||++..|||+.|+.|++.+|||+|+++.||+++|
T Consensus       977 ~~l~p~Dldai~keL~e~~~~~s~~Dv~sy~myP~Vf~~f~~fr~~yG~ld~lpTr~FL~~pe~~EE~~Veie~GKTL~i 1056 (1176)
T KOG0369|consen  977 AELPPLDLDAIRKELQERHGDVSECDVASYAMYPRVFEDFQKFRETYGPLDKLPTRLFLTGPEIAEEFEVEIEQGKTLII 1056 (1176)
T ss_pred             CcCCccCHHHHHHHHHHhcCCCcHHHhhhhhhccHHHHHHHHHHHhcCCccccchhhhccCCCcCceEEEEeccCcEEEE
Confidence                          2222   6889998              45568999999999999999999999999999999999


Q ss_pred             EEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEE
Q psy2807         146 TTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIV  225 (288)
Q Consensus       146 ~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~  225 (288)
                      ++.+.+..+...|.|+++|++||+.|++.|.|..+..+...+|+|++++.++|.|||||+|+++.|++|+.|+|||+|++
T Consensus      1057 k~lAvg~~~~~~GqReVfFeLNGqlR~i~v~Dk~a~ke~v~~PkA~~~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~V 1136 (1176)
T KOG0369|consen 1057 KLLAVGDLLKKTGQREVFFELNGQLRSIRVADKEAAKEIVTRPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAV 1136 (1176)
T ss_pred             EeeecccccccCCceEEEEEecCceeeEEeechhhhhhhcccccCCCCCcccccCCCCCceEEEEEecCceecCCCceEe
Confidence            99999845567799999999999999999999988888888999999999999999999999999999999999999999


Q ss_pred             EeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         226 MSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       226 lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      |.|||||+.|.||.+|+|+++++..|+.+.. +++++|++
T Consensus      1137 LSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1137 LSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred             eecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence            9999999999999999999999999999999 99999864

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=100.00  E-value=3.2e-53  Score=452.06  Aligned_cols=242  Identities=34%  Similarity=0.511  Sum_probs=221.2

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|||+|+|+++++.++++.++||+|+++||+|+||+||+|||+++++++|+|++++    
T Consensus       864 ~~lG~~~~VTP~Sq~vg~~A~~~v~~~l~~~~v~~~~~~~~~~~~v~~~~~G~~G~pp~~~~~~~~~~vl~~~~~~~~rp  943 (1143)
T TIGR01235       864 QMFGDIVKVTPSSKVVGDMALFMVSNDLTVDDVVEPAEELSFPDSVVEFLKGDIGQPHGGFPEPLQKKVLKGEKPITVRP  943 (1143)
T ss_pred             HHcCCCceECChhHhHHHHHHHHHHhccChhhhccccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCc
Confidence            4689999999999999999999999999999999888888999999999999999999999999999999998876    


Q ss_pred             -----------cccc--------CCcccceeecc--------------cCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807          97 -----------TLDR--------KPECDLMMEDE--------------FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA  143 (288)
Q Consensus        97 -----------L~~~--------~~deDvL~~a~--------------fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~  143 (288)
                                 ++++        .++||+|.|++              ||+++.|+|+.||+|++.+|++++++++||++
T Consensus       944 ~~~l~p~~~~~~~~~~~~~~~~~~~~ed~~~y~~~p~v~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~e~~v~~~~g~~~ 1023 (1143)
T TIGR01235       944 GSLLEPADLDAIRKDLQEKHEREVSDFDVASYAMYPKVFTDFAKARDTYGPVSVLPTPAFFYGLADGEEIEVDIEKGKTL 1023 (1143)
T ss_pred             cccCCcccHHHHHHHHHHHhcCCCCHHHHHHHHcCcHHHHHHHHHHHhcCCccccccccccccCCCCcEEEEEecCCcEE
Confidence                       1111        57899995554              67888999999999999999999999999999


Q ss_pred             EEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807         144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL  223 (288)
Q Consensus       144 ~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l  223 (288)
                      +|++.+++ +++..|.++++|++||+.+++.+.+.+.......++++++.++.+|.|||+|+|++|+|++||.|++||+|
T Consensus      1024 ~i~~~~~~-~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L 1102 (1143)
T TIGR01235      1024 IIKLQAVG-ATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPGNPAHVGAPMPGVIIEVKVSSGQAVNKGDPL 1102 (1143)
T ss_pred             EEEecccc-ccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccccCceeecCCCcEEEEEEeCCCCEeCCCCEE
Confidence            99999999 88888999999999999999999987654333445677788889999999999999999999999999999


Q ss_pred             EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ++|||||||++|.||.+|+|+++++++|+.|.. ++|++|+
T Consensus      1103 ~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1103 VVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             EEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            999999999999999999999999999999999 9999874

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=100.00  E-value=1.6e-52  Score=447.79  Aligned_cols=243  Identities=33%  Similarity=0.488  Sum_probs=221.0

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|||+|.|+.+++.++++.++||+|+++|++|+||+||+|||+++++++|+|++++    
T Consensus       866 ~~~G~~~~VTP~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~G~~~~~~~~~~~~~~l~~~~~~~~rp  945 (1146)
T PRK12999        866 RMFGDIVKVTPSSKVVGDMALFMVQNGLTPEDVYEPGEDLDFPDSVVSFLKGELGQPPGGFPEPLQKKVLKGEEPITVRP  945 (1146)
T ss_pred             HHcCCCceeCccchhhHHHHHHHHhhccchhhhhccCceeeCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCh
Confidence            4699999999999999999999999999999999998889999999999999999999999999999999998876    


Q ss_pred             ---c--------cc----c----CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807          97 ---T--------LD----R----KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA  143 (288)
Q Consensus        97 ---L--------~~----~----~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~  143 (288)
                         |        ++    +    .++||+|.|+              .||+++.|+|+.||+|++.||++++++++||++
T Consensus       946 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~e~~~~~~~~gk~~ 1025 (1146)
T PRK12999        946 GELLEPVDFEAERAELEEKLGREVTDRDVLSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGEEIEVEIEPGKTL 1025 (1146)
T ss_pred             hhhCCcccHHHHHHHHHHHhcCCCCHHHHHHHHhCcHHHHHHHHHHHhcCCcccCCCchhhcccCcCceEEeecCCCcee
Confidence               1        11    1    5779999555              478999999999999999999999999999999


Q ss_pred             EEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807         144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL  223 (288)
Q Consensus       144 ~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l  223 (288)
                      +|++.+++ ++++.|.++++|++||+.|+|.|.+..........+++++.++.+|.|||+|+|++|+|++||.|++||+|
T Consensus      1026 ~i~~~~~~-~~~~~g~~~~~~~vnG~~~~V~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L 1104 (1146)
T PRK12999       1026 IIKLEAIG-EPDEDGMRTVYFELNGQPREVQVRDRSVKSTVAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPL 1104 (1146)
T ss_pred             EEEeeccc-CcccCCcEEEEEEECCEEEEEEEecCccccccccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEE
Confidence            99999998 88888999999999999999999987533222234566777888999999999999999999999999999


Q ss_pred             EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ++|||||||++|+||.+|+|+++++++|+.|.. ++|++|++
T Consensus      1105 ~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999       1105 AVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred             EEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence            999999999999999999999999999999999 99999864

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=100.00  E-value=4.1e-52  Score=418.57  Aligned_cols=231  Identities=19%  Similarity=0.309  Sum_probs=205.0

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|   |+|+++||+      .||+|+++|++|+||+||+|||+++++++|++++++    
T Consensus       329 ~~lG~~~~VTP~Sqivg~qA~~---Nvl~g~r~~------~~~~~v~~~~~G~~G~pp~~~~~~l~~~il~~~~~~~~rp  399 (596)
T PRK14042        329 KDLGYPPLVTPTSQVVGTQAVI---NVLTGERYK------TITNEVKLYCQGKYGTPPGKISSALRKKAIGRTEVIEVRP  399 (596)
T ss_pred             HHcCCCCeECCcCcEEEEEehh---hccChhhee------ECCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCc
Confidence            4799999999999999999955   999999998      999999999999999999999999999999998776    


Q ss_pred             ----------cccc-----CCcccceeecccCCC-----------CCCCcccccCCCCCCc----eeeeeecCCceEEEE
Q psy2807          97 ----------TLDR-----KPECDLMMEDEFGPV-----------DRLPTRIFLNGPNIGE----EFSCEFKTGDTAYVT  146 (288)
Q Consensus        97 ----------L~~~-----~~deDvL~~a~fg~~-----------~~l~t~~F~~g~~~ge----e~~v~~~~Gk~~~v~  146 (288)
                                ++++     .++||+|.|++||++           +.+|+..||+|+..++    +|+|+. +||+|+|+
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~ed~l~y~l~p~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~-~Gk~~~Ik  478 (596)
T PRK14042        400 GDLLPNELDQLQNEISDLALSDEDVLLYAMFPEIGRQFLEQRKNNQLIPEPLLTQSSAPDNSVMSEFDIIL-HGESYHVK  478 (596)
T ss_pred             cccCCcCHHHHHHHHhhccCCHHHHHHHHhCcHHHHHHHHHHhccccCCccccccccccCCCCceEEEEEE-CCEEEEEE
Confidence                      2222     588999999998743           4668888998876666    899985 69999999


Q ss_pred             EeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         147 TLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       147 l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      +.+++ . ++.|.++++|++||+.+.+.+.|.+........++++..++++|.|||||+|++|+|++||.|++||+|+++
T Consensus       479 l~~~g-~-~~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~i  556 (596)
T PRK14042        479 VAGYG-M-IEHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSAGDEVKAGQAVLVI  556 (596)
T ss_pred             Eeccc-c-ccCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcceEEEEEEeCCCCEeCCCCEEEEE
Confidence            99998 5 567899999999999999999886543333344566777788999999999999999999999999999999


Q ss_pred             eccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         227 SVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       227 EamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ||||||++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus       557 EamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~  594 (596)
T PRK14042        557 EAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE  594 (596)
T ss_pred             EecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence            999999999999999999999999999999 9999986

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=100.00  E-value=5e-48  Score=390.18  Aligned_cols=227  Identities=19%  Similarity=0.270  Sum_probs=199.7

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|   |+++|+||+      +||+|+++|++|+||+||+|||+++++++|++++++    
T Consensus       329 ~~lG~~~~VTP~Sq~vg~~A~~---nv~~~~~~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp  399 (592)
T PRK09282        329 EDLGYPPLVTPTSQIVGTQAVL---NVLTGERYK------VITKEVKDYVKGLYGRPPAPINEELRKKIIGDEEPITCRP  399 (592)
T ss_pred             HHcCCCCeECChhHhHHHHHHH---HHHcCCccc------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCc
Confidence            4799999999999999999966   788899998      999999999999999999999999999999998776    


Q ss_pred             ----------cccc-----CCc-ccceeecc--------------cCCCC--CCCcccccCCCCCCceeeeeecCCceEE
Q psy2807          97 ----------TLDR-----KPE-CDLMMEDE--------------FGPVD--RLPTRIFLNGPNIGEEFSCEFKTGDTAY  144 (288)
Q Consensus        97 ----------L~~~-----~~d-eDvL~~a~--------------fg~~~--~l~t~~F~~g~~~gee~~v~~~~Gk~~~  144 (288)
                                ++++     .++ ||+|.|++              ||+..  .++|+.||+|++.+++++++++ ||+|+
T Consensus       400 ~~~~~p~~~~~~~~~~~~~~~~~e~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~-Gk~~~  478 (592)
T PRK09282        400 ADLLEPELEKARKEAEELGKSEKEDVLTYALFPQIAKKFLEEREAGELKPEPEPKEAAAAGAEGIPTEFKVEVD-GEKYE  478 (592)
T ss_pred             ccccCCCHHHHHHHHHHHhcCCHHHHHHHHhCcHHHHHHHHHHhccCCcccccCCccccccCCCCCeEEEEEEC-CEEEE
Confidence                      1221     345 89995554              67765  8899999999999999999997 99999


Q ss_pred             EEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEE
Q psy2807         145 VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLI  224 (288)
Q Consensus       145 v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~  224 (288)
                      |++.+++ +++   .++++|++||+.+++.+.+.......   .++++.++..|+|||+|+|.+|+|++||.|++||+|+
T Consensus       479 i~~~~~g-~~~---~r~~~~~~ng~~~~v~v~d~~~~~~~---~~~~~~~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~  551 (592)
T PRK09282        479 VKIEGVK-AEG---KRPFYLRVDGMPEEVVVEPLKEIVVG---GRPRASAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVL  551 (592)
T ss_pred             EEEeecc-CCC---cceEEEEecCceeeeeccCccccccc---ccCCCCCCceEeCCCcEEEEEEEeCCCCEECCCCEEE
Confidence            9999987 443   78999999999999999886432111   1445667789999999999999999999999999999


Q ss_pred             EEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         225 VMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       225 ~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      +||+|||+++|+||.+|+|+++++++|+.|.. ++|+.|+|
T Consensus       552 ~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~  592 (592)
T PRK09282        552 VLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP  592 (592)
T ss_pred             EEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence            99999999999999999999999999999999 99999975

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=100.00  E-value=1.9e-46  Score=377.95  Aligned_cols=221  Identities=18%  Similarity=0.194  Sum_probs=178.9

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|   |+|+++||+      .||+|+++|++|+||+||+|||+++++++|++++++    
T Consensus       324 ~~lG~~~~VTP~Sq~vg~~A~~---nvl~~~r~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~~r  394 (582)
T TIGR01108       324 EDLGYPPLVTPTSQIVGTQAVL---NVLTGERYK------TITKETKGYLKGEYGRTPAPINAELQRKILGDEKPIVDCR  394 (582)
T ss_pred             HHcCCCCeECCccHHHHHHHHH---hhcCHHhhe------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCcCCCC
Confidence            4799999999999999999965   999999998      999999999999999999999999999999987654    


Q ss_pred             -----------ccc----c----CCcccceeecccCCCC--CCC---cccccCCCCCCceeeeeecCCceEEEEEeeccc
Q psy2807          97 -----------TLD----R----KPECDLMMEDEFGPVD--RLP---TRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISE  152 (288)
Q Consensus        97 -----------L~~----~----~~deDvL~~a~fg~~~--~l~---t~~F~~g~~~gee~~v~~~~Gk~~~v~l~~~~~  152 (288)
                                 +++    .    .++||+|.|++||+++  ++.   ...||+|++.++++.   +    .++++.+.  
T Consensus       395 p~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~--  465 (582)
T TIGR01108       395 PADLLEPELDKLRAEVREAGAEKNSIEDVLTYALFPQVGLKFLENRHNPAAFEPKPEEKVIE---Q----EHAQVVGK--  465 (582)
T ss_pred             cccccCchHHHHHHHHHHhcccCCCHHHHHHHHhccHHHHHHHHhhhccccccCCCCcchhh---h----hhhhcccc--
Confidence                       122    1    5789999999999886  111   113556666655443   1    13444433  


Q ss_pred             ccccCCceEEEEEeCCEEEEEEEeccchhhhhh---------ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807         153 RLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLK---------LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL  223 (288)
Q Consensus       153 ~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~---------~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l  223 (288)
                      ..+..+.++++|++||+.+.|.|.+........         ..++++.+++++|.|||||+|++|+|++||.|++||+|
T Consensus       466 ~~~~~g~~~~~~~vnG~~~~V~v~d~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l  545 (582)
T TIGR01108       466 YEETHASGSYTVEVEGKAFVVKVSPGGDVSQITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQTVAEGEVL  545 (582)
T ss_pred             ccccCCceEEEEEECCEEEEEEEcCCccccccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCCCCEECCCCEE
Confidence            234457889999999999999998864321111         12234455678999999999999999999999999999


Q ss_pred             EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-cee
Q psy2807         224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQ  259 (288)
Q Consensus       224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L  259 (288)
                      ++|||||||++|.||.+|+|.++++++||.|.. ++|
T Consensus       546 ~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       546 LILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             EEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            999999999999999999999999999999988 764

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=2.3e-45  Score=370.46  Aligned_cols=224  Identities=18%  Similarity=0.196  Sum_probs=176.8

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|   |+|+++||+      .||+|+++|++|+||+||+|||+++++++|+|++++    
T Consensus       330 ~~lG~~~~VTP~Sqivg~~A~~---N~l~~~r~~------~~~~~v~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp  400 (593)
T PRK14040        330 EDLGFIPLVTPTSQIVGTQAVL---NVLTGERYK------TITKETAGVLKGEYGATPAPVNAELQARVLEGAEPITCRP  400 (593)
T ss_pred             HHcCCCCeECChhHHHHHHHHH---hcCChHhhe------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCh
Confidence            4799999999999999999965   999999998      999999999999999999999999999999998776    


Q ss_pred             ----------cccc-----------C---CcccceeecccCCCCCCCcccccCCCCCCceeeeeecCCceEEEEEeeccc
Q psy2807          97 ----------TLDR-----------K---PECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISE  152 (288)
Q Consensus        97 ----------L~~~-----------~---~deDvL~~a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~v~l~~~~~  152 (288)
                                ++++           .   ++||+|.|++||++.    ..||.+......|. .++.++...+.    + 
T Consensus       401 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~e~~l~~~~~p~v~----~~f~~~~~~~~~~~-~~~~~~~~~~~----~-  470 (593)
T PRK14040        401 ADLLAPELDKLEAELRRQAQEKGITLAENAIDDVLTYALFPQIG----LKFLENRHNPAAFE-PVPQAEAAQPA----A-  470 (593)
T ss_pred             hhhcCchHHHHHHHHHHHhhhcCCCcccCCHHHHHHHHhccHHH----HHHHHhhccccccc-CCCcccccccc----c-
Confidence                      1111           1   348999999999987    56655443211010 11112211111    1 


Q ss_pred             ccccCCceEEEEEeCCEEEEEEEeccch---hhh-h------hccccC-CCCCCCeeecCCcEEEEEEecCCCCEEecCC
Q psy2807         153 RLNDHGERTVFFLYNGQLRSVLIRDKNQ---AKK-L------KLRSKA-DSDTAGEIGAPMPGNIIEVKAKVGQQVKKND  221 (288)
Q Consensus       153 ~~~~~~~~~~~~~vnG~~~~v~v~~~~~---~~~-~------~~~~~a-~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~  221 (288)
                      ..+..+.+++.|++||+.+.+.|.+...   ... .      ...+++ +.+++..|+|||+|+|++|+|++||.|++||
T Consensus       471 ~~~e~g~~~~~~~vnG~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd  550 (593)
T PRK14040        471 KAEPAGSETYTVEVEGKAYVVKVSEGGDISQITPAAPAAAPAAAAAAAPAAAAGEPVTAPLAGNIFKVIVTEGQTVAEGD  550 (593)
T ss_pred             cCCCCCCeEEEEEECCEEEEEEECCCCccccccccccccccccccccccCCCCCceEECCccEEEEEEEeCCCCEeCCCC
Confidence            2344577899999999999999987651   110 0      111222 3445669999999999999999999999999


Q ss_pred             EEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         222 VLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       222 ~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      +|+++|||||+++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus       551 ~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  593 (593)
T PRK14040        551 VLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA  593 (593)
T ss_pred             EEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            99999999999999999999999999999999999 9999874

>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6

Probab=99.97  E-value=8.1e-33  Score=244.83  Aligned_cols=121  Identities=27%  Similarity=0.381  Sum_probs=95.9

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|||+|.+.++||+      +||+|+++|++|+||+||+|||+++++++|+++++|    
T Consensus        39 ~~lG~~~~VTPsSqiVg~qA~~nV~~~~~g~r~~------~~p~~v~~~~~G~~G~pp~~~~~~l~~~vl~~~~~i~~RP  112 (196)
T PF02436_consen   39 KDLGYPPKVTPSSQIVGDQAVFNVLNGLLGERYK------DFPDSVVDYLLGKYGKPPGGFPEELRKKVLKGEEPITGRP  112 (196)
T ss_dssp             HHTTS--SSTTHHHHHHHHHHHHHHTT-HHTTTS------S-BHHHHHHHTTTT---TTSS-HHHHHHHHTTS---SSSG
T ss_pred             HHcCCccccCcHHHHHHHHHHHHHHhhhcCcccc------chhHHHHHHhCcccCCCCCCCCHHHHHHHhcCCCCCCCCc
Confidence            4689999999999999999999999888787887      999999999999999999999999999999998876    


Q ss_pred             -----------cccc--------CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807          97 -----------TLDR--------KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA  143 (288)
Q Consensus        97 -----------L~~~--------~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~  143 (288)
                                 ++++        .+|||+|.|+              .||+++.|+|+.||+|++.+++++|+++.||++
T Consensus       113 ~~~l~p~d~~~~r~~l~~~~g~~~~dedvlsyal~P~v~~~f~~~~~~~g~~~~l~t~~~~~g~~~~ee~~v~l~~Gktl  192 (196)
T PF02436_consen  113 GDLLPPADLDKLRKELEEKAGREPTDEDVLSYALFPKVAEDFLKFRAKYGDVSVLPTPVFFYGLKPGEEISVELEPGKTL  192 (196)
T ss_dssp             GGCS----HHHHHHHHHHHCTSTSCHHHHHHHHHCHHHHHHHHHHHHHHS-GGCS-HHHHHHHH-TTEEEEEESCTTEEE
T ss_pred             cccCChhhHHHHHHHHHHHcCCCCCHHHHHHHhcCchhHHHHHHHHHhcCCCCcCCchhhhcCCCCCeEEEEEECCCcEE
Confidence                       1111        5899999555              467899999999999999999999999889999


Q ss_pred             EEEE
Q psy2807         144 YVTT  147 (288)
Q Consensus       144 ~v~l  147 (288)
                      +|+|
T Consensus       193 ~vkl  196 (196)
T PF02436_consen  193 IVKL  196 (196)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9986

4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=99.89  E-value=1.7e-24  Score=214.60  Aligned_cols=141  Identities=12%  Similarity=0.064  Sum_probs=102.2

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhh--CCCCcc--
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVL--GSLKDH--   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL--~g~~~i--   96 (288)
                      .++|||||||||||||||||+|   |+++| ||+      .+|+|+++|++|+||+||+|||+++++++|  +|++++  
T Consensus       332 ~~lG~~~~VTP~Sqivg~qA~~---nv~~g-ry~------~~~~e~~~~~~G~yG~~p~~~~~e~~~~~~~~~~~~~~~~  401 (499)
T PRK12330        332 KDAGYPPLVTPSSQIVGTQAVF---NVLMG-RYK------VLTGEFADLMLGYYGETPGERNPEVVEQAKKQAKKEPITC  401 (499)
T ss_pred             HHcCCCCeeCChhHHHHHHHHH---HHHcC-ccc------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHHhhCCCCCCcC
Confidence            4799999999999999999966   66667 887      889999999999999999999999999997  577776  


Q ss_pred             ------------cccc--------CCcccceeecccCCCCCCCcccccCCCCCCce-eeeeecCCceEEEEEeecccccc
Q psy2807          97 ------------TLDR--------KPECDLMMEDEFGPVDRLPTRIFLNGPNIGEE-FSCEFKTGDTAYVTTLSISERLN  155 (288)
Q Consensus        97 ------------L~~~--------~~deDvL~~a~fg~~~~l~t~~F~~g~~~gee-~~v~~~~Gk~~~v~l~~~~~~~~  155 (288)
                                  ++++        .+|||+|.|++||+++    ..||........ +.+....++... ...... ...
T Consensus       402 rp~~~l~p~~~~~~~~~~~~~~~~~~~edvl~y~l~p~v~----~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~  475 (499)
T PRK12330        402 RPADLLEPEWDKLRAEALALEGCDGSDEDVLTYALFPQVA----PKFFATRAEGPKNVGKDPAQGAAEA-AAAAGH-AGA  475 (499)
T ss_pred             ChhhhcCchHHHHHHHHHHhccCCCCHHHHHHHHcCcHHH----HHHHHHHHhcccccCCchhhhhhhc-cccccc-cCc
Confidence                        1211        5789999999999998    888865432221 333321111100 000000 111


Q ss_pred             cCCceEEEEEeCCEEEEEEEec
Q psy2807         156 DHGERTVFFLYNGQLRSVLIRD  177 (288)
Q Consensus       156 ~~~~~~~~~~vnG~~~~v~v~~  177 (288)
                      ..+..++.+.++|+.+.|.|..
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~  497 (499)
T PRK12330        476 ITGPITYKVTVGGRSHKVTVAP  497 (499)
T ss_pred             ccCceEEEEEECCEEEEEEEee
Confidence            2456688999999999998853

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=99.88  E-value=3.4e-24  Score=211.44  Aligned_cols=95  Identities=18%  Similarity=0.230  Sum_probs=86.1

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|   |+|+|+||+      .||+|+++|++|+||+||+|||+++++++|++++++    
T Consensus       328 ~~lG~~~~VTP~Sq~vg~~A~~---Nvl~g~r~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~il~~~~~~~~rp  398 (467)
T PRK14041        328 KDLGYPPLVTPTSQIVGVQAVL---NVLTGERYK------RVTNETKNYVKGLYGRPPAPIDEELMKKILGDEKPIDCRP  398 (467)
T ss_pred             HHcCCCCcCCChhHHHHHHHHH---hhcChhhee------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCh
Confidence            4799999999999999999965   999999998      999999999999999999999999999999998776    


Q ss_pred             ----------cccc-----CCcccceeecccCCCCCCCcccccCCCC
Q psy2807          97 ----------TLDR-----KPECDLMMEDEFGPVDRLPTRIFLNGPN  128 (288)
Q Consensus        97 ----------L~~~-----~~deDvL~~a~fg~~~~l~t~~F~~g~~  128 (288)
                                ++++     .++||+|.|++||+++    ..||.+..
T Consensus       399 ~~~~~p~~~~~~~~~~~~~~~~e~~l~y~~~p~v~----~~f~~~~~  441 (467)
T PRK14041        399 ADLLEPELEKARKELGILAETDEDLLIYVILGEVG----KKFLKKKY  441 (467)
T ss_pred             hhccCchHHHHHHHhcccCCCHHHHHHHHcCcHHH----HHHHHhcc
Confidence                      1222     5889999999999998    89998765

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=99.88  E-value=5.6e-24  Score=202.85  Aligned_cols=98  Identities=20%  Similarity=0.228  Sum_probs=86.6

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCC-CCcc---
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGS-LKDH---   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g-~~~i---   96 (288)
                      .++|||++|||||||||+||   |.|||+||||+      .|++++++|++|+||+||+++++++++++|++ .++|   
T Consensus       332 edlGypPLVTPtSQiVGtQA---vlNVl~GerYK------~It~E~~~yv~G~YGrtPapi~~el~~~ilg~~~~~i~~R  402 (472)
T COG5016         332 EDLGYPPLVTPTSQIVGTQA---VLNVLTGERYK------VITKETKDYVKGLYGRTPAPINAELIEKILGDEEKPITCR  402 (472)
T ss_pred             hhcCCCCccCchhhhhhHHH---HHHHHhcchhh------HHHHHHHHHhccccCCCCCCCCHHHHHHHhCCCCCcccCC
Confidence            58999999999999999999   66999999999      99999999999999999999999999999999 4666   


Q ss_pred             -----------cc----cc---CCcccceeecccCCCCCCCcccccCCCCCCc
Q psy2807          97 -----------TL----DR---KPECDLMMEDEFGPVDRLPTRIFLNGPNIGE  131 (288)
Q Consensus        97 -----------L~----~~---~~deDvL~~a~fg~~~~l~t~~F~~g~~~ge  131 (288)
                                 ++    +.   ..+||||+|++|++++    ..||.+....+
T Consensus       403 pADll~pe~~k~k~e~~~~~~~~~eeDVLtyalfp~va----~~Fl~~r~~~e  451 (472)
T COG5016         403 PADLLEPELDKLKKELEELAIEEEEEDVLTYALFPQVA----KKFLEGREKPE  451 (472)
T ss_pred             hhhhcchHHHHHHHHHHHHhhhcccccchhhhhhHHHH----HHHHhcccccc
Confidence                       11    11   3568999999999999    99998775433

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=99.88  E-value=7.8e-24  Score=208.27  Aligned_cols=94  Identities=16%  Similarity=0.223  Sum_probs=83.7

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|   |+|+|+||+      .+|+|+++|++|+||+||+|||+++++++|++++++    
T Consensus       332 ~~lG~~~~VTP~Sq~vg~~A~~---nvl~g~r~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp  402 (448)
T PRK12331        332 ADLGYPPLVTPLSQMVGTQALM---NVISGERYK------MVPNEIKDYVRGLYGRPPAPIAEEIKKKIIGDEEVITCRP  402 (448)
T ss_pred             HHcCCCCeeCChhHHHHHHHHH---HHhcchhhc------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCh
Confidence            4799999999999999999965   789999998      999999999999999999999999999999998776    


Q ss_pred             ----------cccc-----CCcccceeecccCCCCCCCcccccCCC
Q psy2807          97 ----------TLDR-----KPECDLMMEDEFGPVDRLPTRIFLNGP  127 (288)
Q Consensus        97 ----------L~~~-----~~deDvL~~a~fg~~~~l~t~~F~~g~  127 (288)
                                ++++     .++||+|.|++||+++    ..||...
T Consensus       403 ~~~~~p~~~~~~~~~~~~~~~~e~~l~y~~~p~v~----~~~~~~~  444 (448)
T PRK12331        403 ADLIEPQLEKLREEIAEYAESEEDVLSYALFPQQA----KDFLGRR  444 (448)
T ss_pred             hhcCCccHHHHHHHHHHhcCCHHHHHHHHcCcHHH----HHHHHHh
Confidence                      1222     6789999999999998    8887543

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=99.87  E-value=1.2e-23  Score=206.91  Aligned_cols=94  Identities=17%  Similarity=0.197  Sum_probs=83.2

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++||||||||||||||+||+|   ||++|+||+      .||+|+++|++|+||+||+|||+++++++|++++++    
T Consensus       341 ~~lG~p~~VTP~Sqivg~qA~~---nV~~g~ry~------~~~~ev~~~~~G~yG~~p~~~~~el~~~il~~~~~~~~rp  411 (468)
T PRK12581        341 KDLGYPPLVTPLSQMVGTQAAM---NVILGKPYQ------MVSKEIKQYLAGDYGKTPAPVNEDLKRSQIGSAPVTTNRP  411 (468)
T ss_pred             HHcCCCCEECChhHHHHHHHHH---HHHcCCCch------hCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCCCCc
Confidence            4799999999999999999965   777899998      999999999999999999999999999999998776    


Q ss_pred             ----------cccc-----CCcccceeecccCCCCCCCcccccCCC
Q psy2807          97 ----------TLDR-----KPECDLMMEDEFGPVDRLPTRIFLNGP  127 (288)
Q Consensus        97 ----------L~~~-----~~deDvL~~a~fg~~~~l~t~~F~~g~  127 (288)
                                ++++     .++||+|.|++||+++    ..||...
T Consensus       412 ~~~l~p~~~~~r~~~~~~~~~~edvl~~~l~p~v~----~~f~~~~  453 (468)
T PRK12581        412 ADQLSPEFEVLKAEVADLAQTDEDVLTYALFPSVA----KPFLTTK  453 (468)
T ss_pred             ccccCccHHHHHHHHhhhcCCHHHHHHHHcCcHHH----HHHHHHH
Confidence                      1222     6889999999999998    8887543

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=99.87  E-value=9.8e-22  Score=193.72  Aligned_cols=235  Identities=18%  Similarity=0.268  Sum_probs=153.3

Q ss_pred             ceecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC-------CCC
Q psy2807          14 PVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP-------YQG   80 (288)
Q Consensus        14 ~~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P-------p~g   80 (288)
                      .||||+|...|+-|.-    +|+.|+|+++++. -+++..+++..      .+..-.+|+.|+.-.+.+|       -++
T Consensus       365 ~vRvDsGV~~G~~Is~----~YDpMiAKLi~~G-~dR~eAl~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~  439 (645)
T COG4770         365 GVRVDSGVREGDEISP----FYDPMIAKLIVHG-ADREEALDRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTG  439 (645)
T ss_pred             ceecccCcccCCcccc----ccchHHHHHhhcC-CCHHHHHHHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcce
Confidence            4899999999999866    9999999999988 78888877764      5677789999999998888       556


Q ss_pred             CCHhHHHHhhCCCCccccccCCcccce------------eecccCCCCCCCcccccCCCCCCceeeeeecCCc-eEEEEE
Q psy2807          81 FPKKLQEKVLGSLKDHTLDRKPECDLM------------MEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGD-TAYVTT  147 (288)
Q Consensus        81 f~~~l~~~vL~g~~~iL~~~~~deDvL------------~~a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk-~~~v~l  147 (288)
                      |..+.....+...++       .++.+            ..+.-++|+.+.  .|-.... ..+..+.+. |+ ...+++
T Consensus       440 ~i~r~~~~~~~~~~~-------~~~~~aa~~~~~~~~~~~~~~~~pw~~~~--~w~~~~~-~~~~~~~~~-~~~~~~v~l  508 (645)
T COG4770         440 FIAREIEDLFAPAPA-------SADALAAAALLAQPALERRAESDPWASLS--GWVVTGD-AAELRVLID-GEERVEVRL  508 (645)
T ss_pred             eeeecccccccCCCc-------hhhhHHHHHhhhchhhhcccccCcccccC--Cceeecc-eeeeeEEec-CCcceEEEE
Confidence            666555544421111       11222            011113444332  2211111 112222232 22 333433


Q ss_pred             eec-c-c--ccccC-CceEEEEEeCCEEEEEEEeccch---------hhhhhc-c---c-cCCCCCCCeeecCCcEEEEE
Q psy2807         148 LSI-S-E--RLNDH-GERTVFFLYNGQLRSVLIRDKNQ---------AKKLKL-R---S-KADSDTAGEIGAPMPGNIIE  208 (288)
Q Consensus       148 ~~~-~-~--~~~~~-~~~~~~~~vnG~~~~v~v~~~~~---------~~~~~~-~---~-~a~~~~~~~i~apm~G~V~~  208 (288)
                      ... + .  ..+.. ..+...+.++|......+.....         .+.... .   + +.....++.+.|||||+|++
T Consensus       509 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~  588 (645)
T COG4770         509 PAREGRERFYVDSDWDPELASAALSGRKRAVRVARAGGGLTLFWGGGSPRIAELDKLGGAKVAAASSGELLAPMPGTVVS  588 (645)
T ss_pred             eccCCcceeeeeccCCccceeEEecCccccceeeecCCceEEecCCcCcccccccccccccccCCCCCceecCCCceEEE
Confidence            211 0 0  00000 11345567777777665432211         111110 1   1 12334567899999999999


Q ss_pred             EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      +.|++||.|.+||+|++||||||||.|+||.+|+|+++.+++||+|.. ++|+++++
T Consensus       589 v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~  645 (645)
T COG4770         589 VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE  645 (645)
T ss_pred             EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence            999999999999999999999999999999999999999999999999 99999864

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.84  E-value=7.1e-21  Score=160.54  Aligned_cols=71  Identities=25%  Similarity=0.282  Sum_probs=68.1

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      +...|+|||+|++++++|++||.|++||+||+||||||||+|.||.+|+|.+|+++.||.|.. |+|+.|++
T Consensus        69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~  140 (140)
T COG0511          69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP  140 (140)
T ss_pred             cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence            356799999999999999999999999999999999999999999999999999999999999 99999864

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.81  E-value=8.2e-19  Score=150.02  Aligned_cols=124  Identities=23%  Similarity=0.234  Sum_probs=98.4

Q ss_pred             eeeeeecCCceEEEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhh-----h-h----hcccc------------
Q psy2807         132 EFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAK-----K-L----KLRSK------------  189 (288)
Q Consensus       132 e~~v~~~~Gk~~~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~-----~-~----~~~~~------------  189 (288)
                      .+.+.+ +|..|.+++...+       .+.+.+.+||+.|.|.+.......     . .    ...|.            
T Consensus         3 ~~~~~~-~g~~~~v~v~~~~-------~~~~~itvnG~~y~V~vee~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~p~   74 (153)
T PRK05641          3 KVKVIV-DGVEYEVEVEELG-------PGKFRVSFEGKTYEVEAKGLGIDLSAVQEQVPTPAPAPAPAVPSAPTPVAPAA   74 (153)
T ss_pred             eEEEEE-CCEEEEEEEEeec-------CccEEEEECCEEEEEEEEEcccccccccccccccccccCcccccCcccccccC
Confidence            356777 4899988876543       567899999999999886522000     0 0    00010            


Q ss_pred             ---C-CCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         190 ---A-DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       190 ---a-~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                         + ...+...|+|||+|+|.+|+|++||.|++||.|+++|+|||+++|.||.+|+|.+++++.||.|.. ++|++|.
T Consensus        75 ~~~~~~~~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I~  153 (153)
T PRK05641         75 PAPAPASAGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIELG  153 (153)
T ss_pred             ccccCCCCCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEeC
Confidence               0 111356799999999999999999999999999999999999999999999999999999999999 9999873

>KOG0238|consensus

Probab=99.80  E-value=1.4e-19  Score=176.58  Aligned_cols=245  Identities=19%  Similarity=0.171  Sum_probs=157.2

Q ss_pred             ceecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC-------CCC
Q psy2807          14 PVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP-------YQG   80 (288)
Q Consensus        14 ~~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P-------p~g   80 (288)
                      -||||+|.+.||-|.+    .|+.++|+++|+. -+++..+.+.+      .+..-.++++||+-...+|       .+.
T Consensus       362 ~vRvdtgV~~g~~vs~----~YDpmiaKlvvwg-~dR~~Al~kl~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~  436 (670)
T KOG0238|consen  362 GVRVDTGVRSGDEVSI----HYDPMIAKLVVWG-KDREEALNKLKDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTK  436 (670)
T ss_pred             CeeeecCcccCCcccc----cccchheeeeEec-CCHHHHHHHHHHHHhhcEEecCccchHHHHHHhcChhhhcCccccc
Confidence            3799999999999999    9999999998887 57776665543      4566689999999998888       888


Q ss_pred             CCHhHHHHhhCCCCcc-------------cccc-CCcccceee---cccCCCCCCCccccc------CCCCCCce---ee
Q psy2807          81 FPKKLQEKVLGSLKDH-------------TLDR-KPECDLMME---DEFGPVDRLPTRIFL------NGPNIGEE---FS  134 (288)
Q Consensus        81 f~~~l~~~vL~g~~~i-------------L~~~-~~deDvL~~---a~fg~~~~l~t~~F~------~g~~~gee---~~  134 (288)
                      |.+++++..+.++...             |... ...-.-+..   ..+..+...|+..|-      ..++.++.   ..
T Consensus       437 fi~~~~~elf~~~~~~~~~~~~~~a~a~~l~~~~~~~a~~f~~~n~~~~~v~~~~~~~r~n~s~~~~~~~~~~e~~v~v~  516 (670)
T KOG0238|consen  437 FIPEHQPELFAPESITPAEQLSQAAVASSLNAWASGRAYQFRLQNKDRASVFSSSPPFRFNCSLVVKITLKTGENPVHVA  516 (670)
T ss_pred             cchhcCccccCccccCcHHHHHHHHHHHHHHHHhhchhhHHhhccCCccceeccCCceEEEEeeEEEEcccCCccceEEE
Confidence            9999999888875433             0000 000000000   112223333333331      13333332   33


Q ss_pred             eeecCCceEEEEEeeccc-----ccccCC-ceEEEEEeC--CEEEEEEEeccc-------hhhhhhc-c--------ccC
Q psy2807         135 CEFKTGDTAYVTTLSISE-----RLNDHG-ERTVFFLYN--GQLRSVLIRDKN-------QAKKLKL-R--------SKA  190 (288)
Q Consensus       135 v~~~~Gk~~~v~l~~~~~-----~~~~~~-~~~~~~~vn--G~~~~v~v~~~~-------~~~~~~~-~--------~~a  190 (288)
                      |..+.+.++.|.+...+.     .++..+ ...+.+..+  |....+.+....       ...+... .        .+.
T Consensus       517 V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ve~~~~k~l~~~~s~~  596 (670)
T KOG0238|consen  517 VRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDGEGNGYQGRVIILGDEISLFSNEGVIKVEVLPPKYLSPQSSET  596 (670)
T ss_pred             EEECCCCeEEEEecCCceEeeccceecccccceEEEEeccCceEEEEEEeCCeEEEEecCcceeEecCChHhhhhhhhhh
Confidence            444455555555443321     111111 112233333  333332222111       0000000 0        112


Q ss_pred             CCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         191 DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       191 ~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ....++.+.|||||.|.+++|++||.|++||.+++|+|||||+.++||.+|+|+.+.++.|++|.. ++|.+++
T Consensus       597 ~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  597 KEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             ccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            334567799999999999999999999999999999999999999999999999999999999999 9998863

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.77  E-value=6.3e-18  Score=140.84  Aligned_cols=70  Identities=29%  Similarity=0.393  Sum_probs=66.9

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      +...|+|||+|+|.+|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++||.|.. ++|++|.
T Consensus        60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  130 (130)
T PRK06549         60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG  130 (130)
T ss_pred             CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence            456799999999999999999999999999999999999999999999999999999999999 9999873

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.75  E-value=5.9e-18  Score=126.56  Aligned_cols=68  Identities=22%  Similarity=0.311  Sum_probs=65.6

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..|+|||+|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|.. ++|+.|+
T Consensus         3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889          3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            3699999999999999999999999999999999999999999999999999999999999 9999874

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.69  E-value=1.8e-16  Score=118.01  Aligned_cols=68  Identities=24%  Similarity=0.308  Sum_probs=65.9

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..|+|||+|+|.+|++++||.|++||+|+++|+|||+.++.||.+|+|.+++++.||.|.. ++|++|+
T Consensus         2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            4789999999999999999999999999999999999999999999999999999999999 9999875

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.67  E-value=2.4e-16  Score=118.95  Aligned_cols=66  Identities=29%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             eeecCCcEEEEE------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         197 EIGAPMPGNIIE------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       197 ~i~apm~G~V~~------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      +|++|+.|...+      |+|++||.|++||+|+.||+|||+++|+||.+|+|.++++++|+.|.. ++|+.|
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            588999988777      999999999999999999999999999999999999999999999999 999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK06748 hypothetical protein; Validated

Probab=99.65  E-value=9.9e-16  Score=118.30  Aligned_cols=70  Identities=11%  Similarity=0.115  Sum_probs=65.3

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEecc-ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM-KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam-Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      .|.|||+|+|.+|++++||.|++||+|++||+| |+..+|.||.+|+|.++++++||.|.. ++|+.|+.-.
T Consensus         6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~~   77 (83)
T PRK06748          6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDDL   77 (83)
T ss_pred             EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECCe
Confidence            589999999999999999999999999999997 456699999999999999999999999 9999997544

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.60  E-value=3.4e-15  Score=128.21  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=65.7

Q ss_pred             CCeeecCCcEEEEE-------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         195 AGEIGAPMPGNIIE-------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       195 ~~~i~apm~G~V~~-------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ...|+|||.|++++       |+|++||.|++||+|++||||||+++|+|+.+|+|.+++++.|+.|.. ++|+.|+
T Consensus        80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531        80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            35799999999998       799999999999999999999999999999999999999999999999 9999874

The gene name is accB or fabE.

>PRK07051 hypothetical protein; Validated

Probab=99.57  E-value=1.7e-14  Score=110.37  Aligned_cols=68  Identities=25%  Similarity=0.255  Sum_probs=65.9

Q ss_pred             CeeecCCcEEEEE-------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         196 GEIGAPMPGNIIE-------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       196 ~~i~apm~G~V~~-------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..++||++|++++       +++++||.|++||+++.+|+|||+++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus         4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051          4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            5799999999999       999999999999999999999999999999999999999999999999 9999985

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.56  E-value=1.8e-14  Score=131.90  Aligned_cols=70  Identities=20%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             CCeeecCCcEEEEE-------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         195 AGEIGAPMPGNIIE-------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       195 ~~~i~apm~G~V~~-------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ...|.|||+|++++       |+|++||.|++||+|++||+|||+++|+||.+|+|.+++++.||.|.. ++|++|+|
T Consensus       197 ~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP  274 (274)
T PLN02983        197 HPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP  274 (274)
T ss_pred             CCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence            35799999999999       799999999999999999999999999999999999999999999999 99999865

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.54  E-value=2.9e-14  Score=122.29  Aligned_cols=69  Identities=20%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             CCeeecCCcEEEEE-------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         195 AGEIGAPMPGNIIE-------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       195 ~~~i~apm~G~V~~-------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ...|+|||.|++..       |+|++||.|++||+|+++|||||.++|+||.+|+|.+++++.|+.|.. ++|+.|+
T Consensus        79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302         79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            35799999999998       899999999999999999999999999999999999999999999999 9999874

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.51  E-value=1.1e-13  Score=100.04  Aligned_cols=66  Identities=30%  Similarity=0.424  Sum_probs=63.3

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      .|+||++|+|.+|++++||.|++||.|+.+++||+..+|+||.+|+|..++++.|+.|.. ++|+.|
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            378999999999999999999999999999999999999999999999999999999999 998864

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.44  E-value=4.8e-13  Score=125.68  Aligned_cols=68  Identities=18%  Similarity=0.211  Sum_probs=63.4

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCCCC
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKTDP  270 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~~~  270 (288)
                      .|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++.+++|+.|.. ++|+.+++.....+
T Consensus        16 ~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~~~~   84 (371)
T PRK14875         16 EGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEVSDA   84 (371)
T ss_pred             eEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCCCcc
Confidence            599999999999999999999999999999999999999999999999999999 99999986554333

>TIGR02712 urea_carbox urea carboxylase

Probab=99.40  E-value=8e-13  Score=143.66  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      +...|.|||+|+|++|+|++||.|++||+|++||+||||++|.||.+|+|.++++++||.|.. ++|+.|+
T Consensus      1131 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1131 GAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             CCcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            345799999999999999999999999999999999999999999999999999999999999 9999874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.35  E-value=5.7e-12  Score=93.82  Aligned_cols=60  Identities=25%  Similarity=0.305  Sum_probs=57.7

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      +|++.+|++++||.|++||+|+.+|+|||..+|+||++|+|.+++++.|+.+.. +.|+.|
T Consensus        13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            699999999999999999999999999999999999999999999999999999 998864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.30  E-value=7.6e-12  Score=122.48  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=62.9

Q ss_pred             eecCC-cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         198 IGAPM-PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       198 i~apm-~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      +..-| .|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++||.|.. ++|++|+..
T Consensus        52 lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~  121 (418)
T PTZ00144         52 MGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG  121 (418)
T ss_pred             CCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence            33445 599999999999999999999999999999999999999999999999999999 999999743

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.30  E-value=7e-12  Score=123.86  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      +|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|.. ++|+.|+.
T Consensus       105 eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~  167 (463)
T PLN02226        105 DGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK  167 (463)
T ss_pred             eEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence            599999999999999999999999999999999999999999999999999999 99999974

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.17  E-value=8.4e-11  Score=115.05  Aligned_cols=63  Identities=19%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|++|++.
T Consensus        16 eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~   79 (407)
T PRK05704         16 EATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG   79 (407)
T ss_pred             eEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            499999999999999999999999999999999999999999999999999999 999999753

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.08  E-value=4.4e-10  Score=109.90  Aligned_cols=63  Identities=21%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|++|+..
T Consensus        14 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        14 EGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             eEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            399999999999999999999999999999999999999999999999999999 999999743

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.07  E-value=6.2e-10  Score=114.46  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=61.2

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++||.|.. ++|++|+..
T Consensus        14 eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854         14 EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            599999999999999999999999999999999999999999999999999999 999999865

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.05  E-value=4.2e-10  Score=115.72  Aligned_cols=63  Identities=22%  Similarity=0.207  Sum_probs=60.7

Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|+.|..
T Consensus       217 ~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~  280 (633)
T PRK11854        217 DEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEV  280 (633)
T ss_pred             cceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence            3699999999999999999999999999999999999999999999999999999 99999973

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.02  E-value=9.7e-10  Score=107.53  Aligned_cols=65  Identities=25%  Similarity=0.256  Sum_probs=62.2

Q ss_pred             CCc-EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         201 PMP-GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       201 pm~-G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      -|. |+|++|++++||.|++||+|++||+.|..++|.||.+|+|.+|.+++|+.|.. ++|+.|+..
T Consensus        13 ~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~   79 (404)
T COG0508          13 TMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEE   79 (404)
T ss_pred             ccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecC
Confidence            364 99999999999999999999999999999999999999999999999999999 999999865

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.97  E-value=2e-09  Score=109.06  Aligned_cols=66  Identities=24%  Similarity=0.285  Sum_probs=62.7

Q ss_pred             ecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .++..|+|++|+|++||.|++||+|++||+|||+++|.|+.+|+|.++++++|+.|.. ++|++|+.
T Consensus         9 g~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~   75 (546)
T TIGR01348         9 GDNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV   75 (546)
T ss_pred             CCCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence            3447899999999999999999999999999999999999999999999999999999 99999974

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.96  E-value=1.6e-09  Score=109.69  Aligned_cols=62  Identities=29%  Similarity=0.310  Sum_probs=59.9

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|+.|+.
T Consensus       129 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~  191 (546)
T TIGR01348       129 KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSV  191 (546)
T ss_pred             eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEec
Confidence            489999999999999999999999999999999999999999999999999999 99999963

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=98.94  E-value=3e-09  Score=104.49  Aligned_cols=63  Identities=14%  Similarity=0.021  Sum_probs=60.2

Q ss_pred             CCc-EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         201 PMP-GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       201 pm~-G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      .|. |+|++|+|++||.|++||+|+++|+|||++++.||.+|+|.++++++|+.|.. ++|+.|+
T Consensus         9 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~   73 (416)
T PLN02528          9 GIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM   73 (416)
T ss_pred             CccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            343 99999999999999999999999999999999999999999999999999999 9999986

>KOG0368|consensus

Probab=98.90  E-value=9.6e-09  Score=110.46  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             CCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         192 SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       192 ~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..++..++||.||++++++|+.|+.|.+||+-+++|.|||.+++.|+.+|+| +...++|+.+.+ ++|+.++
T Consensus       682 enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~  753 (2196)
T KOG0368|consen  682 ENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLT  753 (2196)
T ss_pred             CCCcceecCCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEee
Confidence            4457889999999999999999999999999999999999999999999988 577999999999 9999886

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=98.90  E-value=4e-09  Score=107.71  Aligned_cols=61  Identities=16%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      .|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|++++|+.|.. ++|+.|+
T Consensus       149 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~  210 (590)
T TIGR02927       149 EGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG  210 (590)
T ss_pred             eEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            599999999999999999999999999999999999999999999999999999 9999996

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.90  E-value=4e-09  Score=106.82  Aligned_cols=63  Identities=22%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .|+|++|++++||.|++||.|+++|+|||.++|+||++|+|.++++++|+.|.. ++|++|...
T Consensus       132 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~  195 (547)
T PRK11855        132 EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA  195 (547)
T ss_pred             eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence            399999999999999999999999999999999999999999999999999999 999999743

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.87  E-value=1.7e-08  Score=72.06  Aligned_cols=63  Identities=22%  Similarity=0.192  Sum_probs=59.4

Q ss_pred             cCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         200 APMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      ++-.|++.+|+++.|+.+.+|++++.+++|||...+.||.+|++.+.++..|+.+.. ++|++|
T Consensus        11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          11 SMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             CCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            466799999999999999999999999999999999999999999999999999999 998864

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.87  E-value=9.2e-09  Score=104.19  Aligned_cols=62  Identities=21%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+|.+|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|+.|++
T Consensus        15 ~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~   77 (547)
T PRK11855         15 EVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEA   77 (547)
T ss_pred             eEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecc
Confidence            499999999999999999999999999999999999999999999999999999 99999974

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=98.74  E-value=3.7e-08  Score=96.35  Aligned_cols=62  Identities=19%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+|.+|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++++++|+.|.. ++|+.|..
T Consensus        16 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~   78 (411)
T PRK11856         16 EGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEE   78 (411)
T ss_pred             eEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEec
Confidence            599999999999999999999999999999999999999999999999999999 99999973

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.66  E-value=6.6e-08  Score=95.54  Aligned_cols=61  Identities=18%  Similarity=0.103  Sum_probs=59.2

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe-ecc-ceeEEEe
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN-FMR-PLQLSLN  263 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~-~~L~~i~  263 (288)
                      .|+|++|++++||.|++||+|+.+|+||+.++|.||.+|++.++++++|+. |.. ++|++|+
T Consensus        13 eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~   75 (435)
T TIGR01349        13 TGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV   75 (435)
T ss_pred             eEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence            499999999999999999999999999999999999999999999999999 999 9999995

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=98.63  E-value=1e-07  Score=94.87  Aligned_cols=61  Identities=18%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEe
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLN  263 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~  263 (288)
                      .|+|.+|++++||.|++||.|+.+|++|+.++|.||.+|+|.++++++|+ .|.. ++|++|+
T Consensus        16 eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~   78 (464)
T PRK11892         16 EGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL   78 (464)
T ss_pred             eeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence            39999999999999999999999999999999999999999999999995 7999 9999995

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=98.58  E-value=1.5e-07  Score=96.17  Aligned_cols=62  Identities=21%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+|.+|+|++||.|++||+|+++|+|||.++|.||.+|+|.++++++|+.|.. ++|+.|..
T Consensus        16 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~   78 (590)
T TIGR02927        16 EGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE   78 (590)
T ss_pred             EEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence            499999999999999999999999999999999999999999999999999999 99998853

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=98.50  E-value=6.2e-07  Score=87.83  Aligned_cols=72  Identities=21%  Similarity=0.238  Sum_probs=62.7

Q ss_pred             CCCCCeeecCCcEEEEEEe-cCCCCEEecCCEEEEEecc-----------------------------------------
Q psy2807         192 SDTAGEIGAPMPGNIIEVK-AKVGQQVKKNDVLIVMSVM-----------------------------------------  229 (288)
Q Consensus       192 ~~~~~~i~apm~G~V~~v~-V~~Gd~V~~G~~l~~lEam-----------------------------------------  229 (288)
                      +.....|.|+.+|.|.+++ +++||.|++||+|+.|++-                                         
T Consensus       120 ~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~  199 (409)
T PRK09783        120 EYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRR  199 (409)
T ss_pred             CCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHH
Confidence            3345689999999999998 9999999999999999830                                         


Q ss_pred             -------ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         230 -------KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       230 -------Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                             .....|+||++|+|.+..+.+|+.|.+ ++|++|.
T Consensus       200 l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~  241 (409)
T PRK09783        200 LIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ  241 (409)
T ss_pred             HHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence                   013579999999999999999999999 9999885

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=98.50  E-value=2.9e-07  Score=92.97  Aligned_cols=63  Identities=17%  Similarity=0.121  Sum_probs=59.0

Q ss_pred             CCc-EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEe
Q psy2807         201 PMP-GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLN  263 (288)
Q Consensus       201 pm~-G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~  263 (288)
                      .|. |+|.+|++++||.|++||+|+.+|++|..+++.||.+|+|.+|++++|+ .|.. ++|+.+.
T Consensus       123 ~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~  188 (539)
T PLN02744        123 TMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV  188 (539)
T ss_pred             CcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence            443 9999999999999999999999999999999999999999999999996 7999 9999883

>PRK13380 glycine cleavage system protein H; Provisional

Probab=98.49  E-value=1.2e-07  Score=80.63  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             eecCCcEEEEEEecC-CCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc---c-----eeEEEecCC
Q psy2807         198 IGAPMPGNIIEVKAK-VGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR---P-----LQLSLNGVR  266 (288)
Q Consensus       198 i~apm~G~V~~v~V~-~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~---~-----~L~~i~~~~  266 (288)
                      ..+.+.|.|+.+.+. +|+.|++||++++||+|||..+|.||++|+|.+++...-+.-.-   +     =|+.+.+..
T Consensus        38 ~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d  115 (144)
T PRK13380         38 YAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPAN  115 (144)
T ss_pred             HHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECC
Confidence            445688899999987 89999999999999999999999999999999999877665322   2     277776544

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.45  E-value=4.2e-07  Score=71.72  Aligned_cols=54  Identities=22%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             CCcEEEEEEecCC-CCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCee
Q psy2807         201 PMPGNIIEVKAKV-GQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNF  254 (288)
Q Consensus       201 pm~G~V~~v~V~~-Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V  254 (288)
                      .+-|.|..+.... |+.|++||++++||+||+..+|.||++|+|.+++.+..+.-
T Consensus        26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~p   80 (96)
T cd06848          26 DLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNP   80 (96)
T ss_pred             hhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcCh
Confidence            4578888865544 99999999999999999999999999999999988776653

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0559|consensus

Probab=98.43  E-value=1.1e-07  Score=90.62  Aligned_cols=62  Identities=16%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|.+..|+.++||.|++++.|+.||+.|...+|.||.+|+|.+++|++||.|.. +.|+.|++
T Consensus        86 eG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~  148 (457)
T KOG0559|consen   86 EGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP  148 (457)
T ss_pred             cchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence            377778999999999999999999999999999999999999999999999999 99999986

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=98.42  E-value=8.6e-07  Score=83.44  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=32.3

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ....|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus        41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~   75 (334)
T TIGR00998        41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP   75 (334)
T ss_pred             ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            34679999999999999999999999999999975

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=98.34  E-value=1.4e-06  Score=83.06  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=31.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.++++|.|.+++|++||.|++||+|+.|+.
T Consensus        48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~   81 (346)
T PRK10476         48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP   81 (346)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            4579999999999999999999999999999986

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=98.33  E-value=1.7e-06  Score=81.81  Aligned_cols=68  Identities=26%  Similarity=0.257  Sum_probs=59.9

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc---------------------------------------------
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK---------------------------------------------  230 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK---------------------------------------------  230 (288)
                      ..|.++.+|.|.+++|++||.|++||+|+.|+.-.                                             
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a  127 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQA  127 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            46899999999999999999999999999999610                                             


Q ss_pred             ------------------------e-eEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         231 ------------------------T-ETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       231 ------------------------m-e~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                                              . .+.|+||++|+|.++++++|+.|.+ ++|+.|.
T Consensus       128 ~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv  186 (310)
T PRK10559        128 NNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV  186 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence                                    0 2589999999999999999999999 8887764

>KOG0557|consensus

Probab=98.33  E-value=9.7e-07  Score=86.57  Aligned_cols=67  Identities=21%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             eeecCCc-EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC-Ceecc-ceeEEEe
Q psy2807         197 EIGAPMP-GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLD-YNFMR-PLQLSLN  263 (288)
Q Consensus       197 ~i~apm~-G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G-d~V~~-~~L~~i~  263 (288)
                      .+.+.|. |.|++|..++||.+.+||+||+||+.|..+++.+..+|.+.+|++.+| ..|.. .+|+.|-
T Consensus        45 ALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   45 ALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            3566786 999999999999999999999999999999999999999999999999 55666 9998874

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.29  E-value=1.2e-06  Score=71.28  Aligned_cols=51  Identities=22%  Similarity=0.368  Sum_probs=43.6

Q ss_pred             cEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe
Q psy2807         203 PGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN  253 (288)
Q Consensus       203 ~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~  253 (288)
                      -|.|+.+.+ ++|+.|++||++++||+||+..+|.||++|+|.+++-+..+.
T Consensus        29 lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~   80 (110)
T TIGR03077        29 LGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD   80 (110)
T ss_pred             cCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence            356776665 669999999999999999999999999999999997665554

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=98.28  E-value=2.2e-06  Score=79.44  Aligned_cols=70  Identities=23%  Similarity=0.270  Sum_probs=61.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc---------------------------------------------
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM---------------------------------------------  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam---------------------------------------------  229 (288)
                      ...|.||.+|+|.+++|++||.|++||+|+.|+.-                                             
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~  105 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLD  105 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence            35799999999999999999999999999999741                                             


Q ss_pred             -----------c---------------eeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         230 -----------K---------------TETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       230 -----------K---------------me~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                                 +               -...|+||++|+|..+.+++|+.+.+ ++|+.|..
T Consensus       106 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~  167 (322)
T TIGR01730       106 DAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVD  167 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEc
Confidence                       0               02479999999999999999999999 99998863

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=98.26  E-value=1.5e-06  Score=60.69  Aligned_cols=35  Identities=46%  Similarity=0.598  Sum_probs=32.1

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK  230 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK  230 (288)
                      ..|.||++|+|.+|+|++||.|++||+|++|+.-.
T Consensus         3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            46899999999999999999999999999998743

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=98.21  E-value=3.9e-06  Score=81.69  Aligned_cols=68  Identities=12%  Similarity=0.092  Sum_probs=58.7

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc--------------------------------------------
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK--------------------------------------------  230 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK--------------------------------------------  230 (288)
                      ...|.|..+|+|.+++|++||.|++||+|+.|+.-.                                            
T Consensus        65 ~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d  144 (397)
T PRK15030         65 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYD  144 (397)
T ss_pred             EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence            457999999999999999999999999999998410                                            


Q ss_pred             --------------------------e-eEEEEcCCCeEEEEEeeCCCCeecc-ce--eEEE
Q psy2807         231 --------------------------T-ETLIHASADGVHKVRSSNLDYNFMR-PL--QLSL  262 (288)
Q Consensus       231 --------------------------m-e~~I~Ap~~G~V~~i~v~~Gd~V~~-~~--L~~i  262 (288)
                                                + .+.|+||++|+|.+.++++|+.|.+ ++  |+.|
T Consensus       145 ~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i  206 (397)
T PRK15030        145 QALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV  206 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence                                      0 2589999999999999999999988 53  6666

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=98.20  E-value=4.7e-06  Score=81.16  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      +...|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus        60 ~~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~   94 (390)
T PRK15136         60 NQVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP   94 (390)
T ss_pred             eEEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence            34579999999999999999999999999999974

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=98.19  E-value=4.8e-06  Score=80.52  Aligned_cols=69  Identities=17%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc--------------------------------------------
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK--------------------------------------------  230 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK--------------------------------------------  230 (288)
                      ...|.++++|+|.+++|++||.|++||+|+.|+.-.                                            
T Consensus        63 ~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~  142 (385)
T PRK09578         63 QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYT  142 (385)
T ss_pred             EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            457999999999999999999999999999998510                                            


Q ss_pred             ----------e-----------------eEEEEcCCCeEEEEEeeCCCCeecc-c--eeEEEe
Q psy2807         231 ----------T-----------------ETLIHASADGVHKVRSSNLDYNFMR-P--LQLSLN  263 (288)
Q Consensus       231 ----------m-----------------e~~I~Ap~~G~V~~i~v~~Gd~V~~-~--~L~~i~  263 (288)
                                +                 .+.|+||++|+|.+.++++|+.|.+ +  +|+.|.
T Consensus       143 ~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~  205 (385)
T PRK09578        143 EAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE  205 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence                      0                 1589999999999999999999987 3  777774

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=98.17  E-value=4.9e-06  Score=78.78  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..|.|+++|.|.+++|++||.|++||+|+.|+.
T Consensus        44 i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~   76 (331)
T PRK03598         44 VNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA   76 (331)
T ss_pred             EEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence            479999999999999999999999999999973

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=98.14  E-value=6.8e-06  Score=79.56  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc-----------------------c---------------------
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM-----------------------K---------------------  230 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam-----------------------K---------------------  230 (288)
                      ...|.++.+|+|.+++|++||.|++||+|+.|+.-                       +                     
T Consensus        61 ~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d  140 (385)
T PRK09859         61 VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYD  140 (385)
T ss_pred             EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Confidence            35799999999999999999999999999999841                       0                     


Q ss_pred             --------------------------e-eEEEEcCCCeEEEEEeeCCCCeecc-c--eeEEEe
Q psy2807         231 --------------------------T-ETLIHASADGVHKVRSSNLDYNFMR-P--LQLSLN  263 (288)
Q Consensus       231 --------------------------m-e~~I~Ap~~G~V~~i~v~~Gd~V~~-~--~L~~i~  263 (288)
                                                + .+.|+||++|+|.+.++.+|+.|.+ +  +|+.|.
T Consensus       141 ~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~  203 (385)
T PRK09859        141 TARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQ  203 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEE
Confidence                                      0 2589999999999999999999987 4  577764

>PRK00624 glycine cleavage system protein H; Provisional

Probab=98.07  E-value=8.9e-06  Score=66.59  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=49.2

Q ss_pred             CcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC---eeccc-----eeEEEecCC
Q psy2807         202 MPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY---NFMRP-----LQLSLNGVR  266 (288)
Q Consensus       202 m~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd---~V~~~-----~L~~i~~~~  266 (288)
                      +-|.|+.+.. ++|+.|++||++++||++|+..+|.||++|+|.+++-..-+   .+..+     =|+.|.+.+
T Consensus        30 ~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~  103 (114)
T PRK00624         30 NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDE  103 (114)
T ss_pred             hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECC
Confidence            3456777765 56999999999999999999999999999999999644433   33332     267776543

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=98.04  E-value=1.3e-05  Score=76.97  Aligned_cols=34  Identities=26%  Similarity=0.523  Sum_probs=31.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.|+++|.|.+++|++||.|++||+|+.|+.
T Consensus        61 ~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            4579999999999999999999999999999986

>TIGR00527 gcvH glycine cleavage system H protein

Probab=98.02  E-value=7e-06  Score=68.33  Aligned_cols=66  Identities=17%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             CCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc---c-----eeEEEecCC
Q psy2807         201 PMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR---P-----LQLSLNGVR  266 (288)
Q Consensus       201 pm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~---~-----~L~~i~~~~  266 (288)
                      ...|.|..+.. ++|++|++||++++|||||+-.+|.||++|+|.+++-..-+.-.-   +     =|+.|.+.+
T Consensus        33 ~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~  107 (127)
T TIGR00527        33 DELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSD  107 (127)
T ss_pred             hCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCC
Confidence            34556666643 579999999999999999999999999999999988666554322   1     267776544

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK01202 glycine cleavage system protein H; Provisional

Probab=98.00  E-value=2e-05  Score=65.60  Aligned_cols=65  Identities=20%  Similarity=0.213  Sum_probs=51.7

Q ss_pred             CcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC---Ceecc-----ceeEEEecCC
Q psy2807         202 MPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLD---YNFMR-----PLQLSLNGVR  266 (288)
Q Consensus       202 m~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G---d~V~~-----~~L~~i~~~~  266 (288)
                      .-|.|..+.. +.|+.|++||++++||+||...+|.||++|+|.+++.+..   +.+..     .-|+.|.+.+
T Consensus        35 ~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~  108 (127)
T PRK01202         35 QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD  108 (127)
T ss_pred             hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence            4566766653 5699999999999999999999999999999999955444   55553     2688888654

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.97  E-value=1.7e-05  Score=77.80  Aligned_cols=70  Identities=16%  Similarity=0.217  Sum_probs=59.2

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc-------------------------------------------
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK-------------------------------------------  230 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK-------------------------------------------  230 (288)
                      +...|.++++|.|.++++++||.|++||+|+.|+.-.                                           
T Consensus        86 ~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~l  165 (415)
T PRK11556         86 NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQEL  165 (415)
T ss_pred             eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence            3467999999999999999999999999999996410                                           


Q ss_pred             ---------------------------e-eEEEEcCCCeEEEEEeeCCCCeecc-c--eeEEEe
Q psy2807         231 ---------------------------T-ETLIHASADGVHKVRSSNLDYNFMR-P--LQLSLN  263 (288)
Q Consensus       231 ---------------------------m-e~~I~Ap~~G~V~~i~v~~Gd~V~~-~--~L~~i~  263 (288)
                                                 + .+.|+||++|+|..+.+++|+.|.+ +  +|+.|.
T Consensus       166 d~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~  229 (415)
T PRK11556        166 DAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVIT  229 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEe
Confidence                                       0 2489999999999999999999988 3  566653

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.82  E-value=2.3e-05  Score=72.79  Aligned_cols=34  Identities=32%  Similarity=0.548  Sum_probs=24.9

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      +...|.|+.+|.| +++|++||.|++||+|+.|+.
T Consensus        20 ~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~   53 (328)
T PF12700_consen   20 NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS   53 (328)
T ss_dssp             SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred             EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence            3467999999999 999999999999999999996

...

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.81  E-value=6.6e-05  Score=70.73  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             CeeecCCc---EEEEEEecCCCCEEecCCEEEEEec
Q psy2807         196 GEIGAPMP---GNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       196 ~~i~apm~---G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..|.|+.+   |+|.+|+|++||.|++||+|+.|+.
T Consensus        14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~   49 (327)
T TIGR02971        14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS   49 (327)
T ss_pred             EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence            36889999   9999999999999999999999985

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=97.66  E-value=0.00021  Score=65.91  Aligned_cols=66  Identities=18%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      ..-|+||.+|.+.. .++-||.|+|||+|+.++.    ++|+||.+|+|. =.++.|-.|.+ --|+.|+|..
T Consensus       164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDPRG  230 (256)
T ss_pred             eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECCCC
Confidence            34699999996665 9999999999999999985    799999999985 46889999999 8899999865

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.53  E-value=0.00032  Score=67.62  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|.||.+|.|.+++|++||.|++||+|+.++
T Consensus        43 ~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld   75 (423)
T TIGR01843        43 VKVVQHLEGGIVREILVREGDRVKAGQVLVELD   75 (423)
T ss_pred             eeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence            346889999999999999999999999999985

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.46  E-value=0.00029  Score=58.16  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=36.1

Q ss_pred             EEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC
Q psy2807         204 GNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLD  251 (288)
Q Consensus       204 G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G  251 (288)
                      |.|+.+.+ ++|+.+++|++++.||+.|...+++||++|+|.+++-..-
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~   79 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELL   79 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHH
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccc
Confidence            44555543 5599999999999999999999999999999999875443

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=97.45  E-value=0.0012  Score=55.22  Aligned_cols=66  Identities=21%  Similarity=0.213  Sum_probs=44.1

Q ss_pred             EEEEEeCCEEEEEEEeccchhhhhhc-cccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         161 TVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       161 ~~~~~vnG~~~~v~v~~~~~~~~~~~-~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      .+...+.|...++.+..+.....-.. ...........|.||..|+|.+|++++||.|+.||+|+.|
T Consensus        63 ~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         63 AMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             EEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            45566677777776665432211000 0000112346899999999999999999999999999986

>PRK12784 hypothetical protein; Provisional

Probab=97.45  E-value=0.00074  Score=51.41  Aligned_cols=69  Identities=14%  Similarity=0.170  Sum_probs=62.6

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEE-EEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETL-IHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~-I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ..|.||--|+|.++++.+++.|-+=++|+.|+.|.-+.+ |.--++|-|..+.+.+||.+.. .+|+.++.
T Consensus         6 e~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed   76 (84)
T PRK12784          6 EEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED   76 (84)
T ss_pred             hhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence            358899999999999999999999999999999865554 7888999999999999999999 99999874

>KOG0558|consensus

Probab=97.39  E-value=0.00018  Score=68.82  Aligned_cols=60  Identities=22%  Similarity=0.079  Sum_probs=57.1

Q ss_pred             EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      -+|.+|+|++||.|++=|.||++.+.|...+|.+-.+|+|++++.+.+|.... ++|.-++
T Consensus        79 v~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e  139 (474)
T KOG0558|consen   79 VTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE  139 (474)
T ss_pred             eeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence            47899999999999999999999999999999999999999999999999988 9988776

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.24  E-value=0.00067  Score=47.29  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      ..|.||++|+|.++++++||.|.+ ++|++|+..
T Consensus         3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~   36 (50)
T PF13533_consen    3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP   36 (50)
T ss_pred             EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence            579999999999999999999999 999999853

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=97.22  E-value=0.0012  Score=63.93  Aligned_cols=34  Identities=35%  Similarity=0.437  Sum_probs=31.1

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      -..|.+..+|+|.+|+|+.+|.|++||+|+.|+-
T Consensus        53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~   86 (352)
T COG1566          53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP   86 (352)
T ss_pred             EEEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence            3468899999999999999999999999999983

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=97.20  E-value=0.001  Score=49.38  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=31.2

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ....|.||++|+|.++++++||.|+.|++|+.|+
T Consensus        38 ~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889         38 MEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             ceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            3567999999999999999999999999999884

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=97.19  E-value=0.00065  Score=50.13  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=31.2

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...+.||..|+|.+++++.||.|+.||+|+.||
T Consensus        38 ~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225         38 EIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             cceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            467999999999999999999999999999986

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=97.18  E-value=0.0032  Score=54.14  Aligned_cols=67  Identities=28%  Similarity=0.348  Sum_probs=45.0

Q ss_pred             ceEEEEEeCCEEEEEEEeccchhhhhh--ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         159 ERTVFFLYNGQLRSVLIRDKNQAKKLK--LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       159 ~~~~~~~vnG~~~~v~v~~~~~~~~~~--~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      ...+...+.|+..++.+..+.....-.  ..-.+. .....|.||..|+|.+++++.||.|+.||.|+.|
T Consensus        84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam-Kme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAM-KMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec-ccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            344566667777777666544321100  000111 1235799999999999999999999999999986

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=96.98  E-value=0.0011  Score=53.10  Aligned_cols=45  Identities=29%  Similarity=0.298  Sum_probs=37.7

Q ss_pred             EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeC
Q psy2807         204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN  249 (288)
Q Consensus       204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~  249 (288)
                      |.-.+..|++||.|++||.|+.-+. -+...|.||++|+|+.|.-.
T Consensus        39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~   83 (101)
T PF13375_consen   39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKR   83 (101)
T ss_pred             CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeee
Confidence            3345678999999999999999886 56789999999999987543

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0012  Score=55.15  Aligned_cols=51  Identities=25%  Similarity=0.277  Sum_probs=42.5

Q ss_pred             CcEEEEEE-ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC
Q psy2807         202 MPGNIIEV-KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY  252 (288)
Q Consensus       202 m~G~V~~v-~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd  252 (288)
                      +-|.|+-+ +-+.|+.|++|+.+++||+-|.-.+|.||++|+|.+++-..-+
T Consensus        37 ~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~   88 (131)
T COG0509          37 QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVD   88 (131)
T ss_pred             hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhc
Confidence            34567666 4578999999999999999999999999999999988754433

>PRK07051 hypothetical protein; Validated

Probab=96.95  E-value=0.0015  Score=49.71  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=30.3

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..|.||.+|+|.++.+++||.|+.||+|+.|+
T Consensus        48 ~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         48 TEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            46899999999999999999999999999986

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.82  E-value=0.0048  Score=58.61  Aligned_cols=51  Identities=25%  Similarity=0.322  Sum_probs=43.3

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRS  247 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~  247 (288)
                      ..|.||.+| ++...++.||.|++||+|++|-..    ....+|+||.+|+|....
T Consensus       245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~  299 (316)
T cd06252         245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR  299 (316)
T ss_pred             EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee
Confidence            568999999 666889999999999999998654    346789999999997655

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=96.71  E-value=0.0045  Score=56.09  Aligned_cols=54  Identities=15%  Similarity=0.136  Sum_probs=35.3

Q ss_pred             eecCCcEEEEEEecCCCCEEecCCEEEEEec---cceeEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807         198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV---MKTETLIHASADGVHKVRSSNLDYNFMR  256 (288)
Q Consensus       198 i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa---mKme~~I~Ap~~G~V~~i~v~~Gd~V~~  256 (288)
                      |+||+.|.|..+.+++|+.|..|++|+.|-.   ++.+..|.....+.     ++.|+.+..
T Consensus        91 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~~~~i~~~v~~~~~~~-----i~~g~~v~i  147 (265)
T TIGR00999        91 VRSPFDGYITQKSVTLGDYVAPQAELFRVADLGAVWVEAEVPAKDVSR-----IRKGSKATV  147 (265)
T ss_pred             EECCCCeEEEEEEcCCCCEeCCCCceEEEEcCCcEEEEEEECHHHHhh-----CCCCCEEEE
Confidence            6888888888888888888888888887643   23333333322232     456776654

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=96.68  E-value=0.0018  Score=54.64  Aligned_cols=34  Identities=35%  Similarity=0.467  Sum_probs=31.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.+|+|+.||.|+.||+|+.|+.
T Consensus       107 eneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~  140 (140)
T COG0511         107 ENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP  140 (140)
T ss_pred             cceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence            4689999999999999999999999999999873

>PRK06748 hypothetical protein; Validated

Probab=96.57  E-value=0.0045  Score=47.98  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..|.||.+|+|.++++++||.|..||+|+.|+.
T Consensus        43 ~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         43 VEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             EEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            489999999999999999999999999999974

>PF13437 HlyD_3: HlyD family secretion protein

Probab=96.53  E-value=0.0085  Score=46.95  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      .|+||+.|.|..+.++.|+.|.+|++|+.|..+
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            489999999999999999999999999999864

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.50  E-value=0.014  Score=55.14  Aligned_cols=65  Identities=18%  Similarity=0.127  Sum_probs=49.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc---ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM---KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam---Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      ...|.||.+| +....++.||.|++||.|+.|=..   ....+|+||.+|+|..+.  ..-.|.. +.|+.|
T Consensus       229 ~~~v~A~~~G-l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i  297 (298)
T cd06253         229 VVYVNAETSG-IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI  297 (298)
T ss_pred             eEEEEcCCCe-EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence            3568999999 666779999999999999988653   345689999999996543  4445555 555543

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=96.48  E-value=0.005  Score=46.09  Aligned_cols=32  Identities=31%  Similarity=0.501  Sum_probs=29.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      ...|.||.+|+|.++++++||.|..||+|+.|
T Consensus        43 ~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen   43 EMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             ceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            35799999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=96.38  E-value=0.016  Score=59.73  Aligned_cols=93  Identities=19%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             ceeeeeecCCceEEEEEeeccccc--------------------ccCCceEEEEEeCCEEEEEEEeccchhhhhh--ccc
Q psy2807         131 EEFSCEFKTGDTAYVTTLSISERL--------------------NDHGERTVFFLYNGQLRSVLIRDKNQAKKLK--LRS  188 (288)
Q Consensus       131 ee~~v~~~~Gk~~~v~l~~~~~~~--------------------~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~--~~~  188 (288)
                      .+|.++++ |+.|.|++...+ ..                    +......+.-.+.|...++.+..+.....-.  ..-
T Consensus       478 ~~~~~~vn-G~~~~V~v~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~i  555 (593)
T PRK14040        478 ETYTVEVE-GKAYVVKVSEGG-DISQITPAAPAAAPAAAAAAAPAAAAGEPVTAPLAGNIFKVIVTEGQTVAEGDVLLIL  555 (593)
T ss_pred             eEEEEEEC-CEEEEEEECCCC-ccccccccccccccccccccccCCCCCceEECCccEEEEEEEeCCCCEeCCCCEEEEE
Confidence            35788884 999999886543 10                    0011224445556666666665443211100  000


Q ss_pred             cCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         189 KADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       189 ~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      .+. .....|.||.+|+|.++++++||.|..||+|+.|
T Consensus       556 Eam-Kme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        556 EAM-KMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             ecC-ceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            111 1245899999999999999999999999999987

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.35  E-value=0.014  Score=54.68  Aligned_cols=52  Identities=21%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc--ceeEEEEcCCCeEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM--KTETLIHASADGVHKVRS  247 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam--Kme~~I~Ap~~G~V~~i~  247 (288)
                      ...++||-+| ++...++.||.|++||+|+.+=..  .-..+|+||.+|+|.-+.
T Consensus       223 ~~~v~Ap~~G-~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~  276 (288)
T cd06254         223 VYYVTSPASG-LWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT  276 (288)
T ss_pred             CEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee
Confidence            4568999999 666789999999999999998332  335789999999997665

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG3608 Predicted deacylase [General function prediction only]

Probab=96.34  E-value=0.0099  Score=56.96  Aligned_cols=58  Identities=26%  Similarity=0.330  Sum_probs=48.7

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc---ceeEEEEcCCCeEEEEEe----eCCCCe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM---KTETLIHASADGVHKVRS----SNLDYN  253 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam---Kme~~I~Ap~~G~V~~i~----v~~Gd~  253 (288)
                      ..-+.||-.| ++...|+.||.|++||.|+.+-.+   +.+.+|+|+.+|+|....    ++.||-
T Consensus       256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v~~Gdl  320 (331)
T COG3608         256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLVQPGDL  320 (331)
T ss_pred             cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeeccccCCCCe
Confidence            3459999999 778999999999999999999877   667899999999998765    455543

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=96.32  E-value=0.0033  Score=57.77  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      .|.++..|.|.+++|++||.|++||+|+.|+.
T Consensus         3 ~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~   34 (305)
T PF00529_consen    3 IVQSLVGGIVTEILVKEGQRVKKGQVLARLDP   34 (305)
T ss_dssp             EE--SS-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred             EEeCCCCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence            57899999999999999999999999999985

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=96.30  E-value=0.018  Score=55.05  Aligned_cols=63  Identities=22%  Similarity=0.163  Sum_probs=47.5

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEE
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLS  261 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~  261 (288)
                      .-+.||-+| +....++.||.|++||+|+.|-..    ....+|+||.+|+|...+  ..-.|.. +.|+.
T Consensus       256 ~~v~Ap~~G-i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~  323 (325)
T TIGR02994       256 CFIFAEDDG-LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAV  323 (325)
T ss_pred             eEEEcCCCe-EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEE
Confidence            468999999 555889999999999999988653    246789999999997654  3334444 44443

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.26  E-value=0.023  Score=53.17  Aligned_cols=63  Identities=22%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEecc--ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEE
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM--KTETLIHASADGVHKVRSSNLDYNFMR-PLQLS  261 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam--Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~  261 (288)
                      ..+.||-+|.+. ..++.||.|++||+|+.+-..  ....+|+||.+|+|..+.  ..-.|.. +.|+.
T Consensus       220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~  285 (287)
T cd06251         220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFH  285 (287)
T ss_pred             eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEE
Confidence            368999999655 599999999999999998542  123689999999995443  3334444 44444

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=96.09  E-value=0.0095  Score=42.31  Aligned_cols=31  Identities=35%  Similarity=0.643  Sum_probs=29.1

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      ..|.||.+|.|.+++++.|+.|.+|++|+.|
T Consensus        37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850          37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            5799999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=96.00  E-value=0.031  Score=54.22  Aligned_cols=65  Identities=20%  Similarity=0.137  Sum_probs=47.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      ...|.||-.| ++...++.||.|++||.|+.|-..    .-+.+|+||.+|+|..  ....-.|.. +.|+.|
T Consensus       289 ~~~v~Ap~~G-l~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~V~~G~~l~~I  358 (359)
T cd06250         289 VEMLYAPAGG-MVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRFVRAGDELAKI  358 (359)
T ss_pred             cEEEeCCCCe-EEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCccccCCCeEEEe
Confidence            3468999999 556789999999999999988542    2233469999999864  444455555 555544

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=95.85  E-value=0.042  Score=60.71  Aligned_cols=94  Identities=12%  Similarity=0.024  Sum_probs=69.5

Q ss_pred             EEEEEe-CCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCC
Q psy2807         161 TVFFLY-NGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASA  239 (288)
Q Consensus       161 ~~~~~v-nG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~  239 (288)
                      ++.+++ .|+...+++...+         ..+......+...+.|....|.|+.++.+..++.....++. -...|.||.
T Consensus      1012 e~~v~~~~g~~~~i~~~~~~---------~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~ 1081 (1143)
T TIGR01235      1012 EIEVDIEKGKTLIIKLQAVG---------ATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPM 1081 (1143)
T ss_pred             EEEEEecCCcEEEEEecccc---------ccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccc-cCceeecCC
Confidence            455566 4766666543211         11222335788999999999999999998888765544321 235799999


Q ss_pred             CeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         240 DGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       240 ~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+|.++++++||.|.+ ++|++|+.
T Consensus      1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235      1082 PGVIIEVKVSSGQAVNKGDPLVVLEA 1107 (1143)
T ss_pred             CcEEEEEEeCCCCEeCCCCEEEEEEe
Confidence            99999999999999999 99999984

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=95.75  E-value=0.043  Score=60.67  Aligned_cols=94  Identities=22%  Similarity=0.275  Sum_probs=62.0

Q ss_pred             eeeeeecCCceEEEEEeeccc--------ccccCCceEEEEEeCCEEEEEEEeccchhhhhhc--cccCCCCCCCeeecC
Q psy2807         132 EFSCEFKTGDTAYVTTLSISE--------RLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKL--RSKADSDTAGEIGAP  201 (288)
Q Consensus       132 e~~v~~~~Gk~~~v~l~~~~~--------~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~--~~~a~~~~~~~i~ap  201 (288)
                      ++.+++ +|+.+.|++...+.        ..+......+...+.|...++.+..+.....-..  .-.+ -.....|.||
T Consensus      1042 ~~~~~v-nG~~~~V~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea-mKme~~i~Ap 1119 (1146)
T PRK12999       1042 TVYFEL-NGQPREVQVRDRSVKSTVAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA-MKMETTITAP 1119 (1146)
T ss_pred             EEEEEE-CCEEEEEEEecCccccccccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc-cccceEEecC
Confidence            477888 48888888765320        0111223456667777777777765432211100  0011 1234689999


Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      .+|+|.++.|++||.|+.||.|++||
T Consensus      1120 ~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1120 VDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            99999999999999999999999986

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=95.64  E-value=0.015  Score=56.93  Aligned_cols=35  Identities=31%  Similarity=0.487  Sum_probs=32.5

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      +...|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus        57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~   91 (421)
T TIGR03794        57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ   91 (421)
T ss_pred             ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence            34589999999999999999999999999999996

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=95.64  E-value=0.017  Score=49.54  Aligned_cols=53  Identities=21%  Similarity=0.212  Sum_probs=40.0

Q ss_pred             eecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEE-EEcCCCeEEEEEeeCC
Q psy2807         198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETL-IHASADGVHKVRSSNL  250 (288)
Q Consensus       198 i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~-I~Ap~~G~V~~i~v~~  250 (288)
                      ..=|..|..+-..+.+|+.|++|+.|+.+.+-|-|.. ++||++|+|.-+.--+
T Consensus        83 ~l~~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p  136 (150)
T PF09891_consen   83 CLVPVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIP  136 (150)
T ss_dssp             EEEEEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEET
T ss_pred             EEEEecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecC
Confidence            4457789999999999999999999999999999875 9999999998765333

; PDB: 3D4R_D.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=95.62  E-value=0.055  Score=55.84  Aligned_cols=69  Identities=23%  Similarity=0.311  Sum_probs=48.1

Q ss_pred             ceEEEEEeCCEEEEEEEeccchhhhhhc-cccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         159 ERTVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       159 ~~~~~~~vnG~~~~v~v~~~~~~~~~~~-~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...+...+.|+..++.+..+.....-.. ..-........|.||.+|+|.++.+++||.|..||+|+.|+
T Consensus       522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            3456777788888887765543211100 00011123468999999999999999999999999999986

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=95.59  E-value=0.016  Score=53.69  Aligned_cols=51  Identities=18%  Similarity=0.175  Sum_probs=40.2

Q ss_pred             ecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCC
Q psy2807         199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNL  250 (288)
Q Consensus       199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~  250 (288)
                      .....|..-++.|++||.|++||+|+.=- ---+.-..||.+|+|++|+--+
T Consensus        33 ~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~RG~   83 (257)
T PF05896_consen   33 PDDFPGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINRGE   83 (257)
T ss_pred             CcccCCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEecCC
Confidence            34567888899999999999999999732 1123568999999999987744

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.29  E-value=0.026  Score=48.49  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|.||..|+|.+|+++.|+.|..||+|+.|+
T Consensus       123 ~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        123 MNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             ceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            458999999999999999999999999999875

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=95.23  E-value=0.023  Score=56.76  Aligned_cols=45  Identities=16%  Similarity=0.113  Sum_probs=37.8

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEee
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSS  248 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v  248 (288)
                      .|.--+..|++||+|++||+|+.-... +...+.||++|+|+.|.-
T Consensus        37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            366667899999999999999986532 578899999999999953

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=95.11  E-value=0.029  Score=48.22  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=30.9

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|.|+..|+|.+|+++.||.|..||+|+.|+
T Consensus       124 ~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       124 MNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             ceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            467999999999999999999999999999885

The gene name is accB or fabE.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=95.10  E-value=0.032  Score=43.61  Aligned_cols=31  Identities=16%  Similarity=-0.012  Sum_probs=28.9

Q ss_pred             EEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      +|+||++|+|..+.+++|+.|+. ++|+.|.+
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~   32 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVD   32 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence            48999999999999999999999 99998875

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=95.09  E-value=0.036  Score=40.69  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=29.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      ...|.||.+|+|.+++++.|+.|..|+.|+.+
T Consensus        42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            45799999999999999999999999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.05  E-value=0.085  Score=49.60  Aligned_cols=51  Identities=14%  Similarity=0.069  Sum_probs=41.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc--eeEEEEcCCCeEEEEE
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK--TETLIHASADGVHKVR  246 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK--me~~I~Ap~~G~V~~i  246 (288)
                      ...|.||-+| +....++.|+.|++||.|+.|-..-  -..+++||.+|+|..+
T Consensus       231 ~~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         231 RDWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             eEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            3468999999 6678899999999999999986431  2356899999999765

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=94.87  E-value=0.12  Score=53.41  Aligned_cols=68  Identities=24%  Similarity=0.323  Sum_probs=46.8

Q ss_pred             eEEEEEeCCEEEEEEEeccchhhhhh--ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         160 RTVFFLYNGQLRSVLIRDKNQAKKLK--LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       160 ~~~~~~vnG~~~~v~v~~~~~~~~~~--~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..+.-.+.|...++.+..+.....-.  ..-.+.. ....|.||.+|+|.++++++||.|..||+|+.||.
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK-me~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK-METEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc-eeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            34566667777777766543221100  0001112 34689999999999999999999999999999974

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=94.78  E-value=0.035  Score=55.46  Aligned_cols=44  Identities=23%  Similarity=0.185  Sum_probs=36.8

Q ss_pred             EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEee
Q psy2807         204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSS  248 (288)
Q Consensus       204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v  248 (288)
                      |.--+..|++||+|++||+|+.-.+. ....+.||++|+|+.|..
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            55567899999999999999975543 468899999999999953

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.67  E-value=0.038  Score=54.89  Aligned_cols=33  Identities=30%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..|.++..|.|.+++|++||.|++||+|+.|+.
T Consensus        60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~   92 (457)
T TIGR01000        60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN   92 (457)
T ss_pred             EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence            478999999999999999999999999999986

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=94.32  E-value=0.25  Score=45.65  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|+||++|.|..+.++.|+.|.+|++|+.|...
T Consensus       134 ~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~  168 (322)
T TIGR01730       134 YTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL  168 (322)
T ss_pred             cCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence            45799999999999999999999999999998753

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=94.25  E-value=0.07  Score=50.02  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|.||..|+|.++.+++||.|..||+|+.++..
T Consensus        45 ~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~   79 (371)
T PRK14875         45 TNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA   79 (371)
T ss_pred             eEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            35799999999999999999999999999999864

>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins

Probab=94.08  E-value=0.22  Score=48.75  Aligned_cols=75  Identities=31%  Similarity=0.342  Sum_probs=51.8

Q ss_pred             EEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEE-------ecCCCCEEecCCEEE--EEecccee
Q psy2807         162 VFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEV-------KAKVGQQVKKNDVLI--VMSVMKTE  232 (288)
Q Consensus       162 ~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v-------~V~~Gd~V~~G~~l~--~lEamKme  232 (288)
                      +.++++|.+..+.+.....      .+......+.+|.|--+|.|.++       .|++||.|++||+|+  .++....+
T Consensus       162 V~i~~~GT~l~I~v~E~~~------p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~  235 (385)
T PF06898_consen  162 VGIEIKGTRLIIEVVEKVD------PEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDE  235 (385)
T ss_pred             EEEEEEeeEEEEEEEEcCC------CCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCc
Confidence            5578889888888865421      12223456789999999999998       589999999999998  45433333


Q ss_pred             EEEEcCCCeEEE
Q psy2807         233 TLIHASADGVHK  244 (288)
Q Consensus       233 ~~I~Ap~~G~V~  244 (288)
                      ..  -+.+|.|.
T Consensus       236 ~~--v~A~G~V~  245 (385)
T PF06898_consen  236 QE--VHADGDVK  245 (385)
T ss_pred             eE--ECCcEEEE
Confidence            33  23445443

YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=93.88  E-value=0.17  Score=44.30  Aligned_cols=97  Identities=12%  Similarity=0.152  Sum_probs=52.6

Q ss_pred             EEEEEeCCEEEEEE-EeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCE-Ee--cC-CEEEEEeccceeEEE
Q psy2807         161 TVFFLYNGQLRSVL-IRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQ-VK--KN-DVLIVMSVMKTETLI  235 (288)
Q Consensus       161 ~~~~~vnG~~~~v~-v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~-V~--~G-~~l~~lEamKme~~I  235 (288)
                      .++--++|+...+. +.|+..+...-..--|-....+.|.||..|+|..+.=..-.. ++  .| +.|..+--    .++
T Consensus        22 ~i~aP~~G~vi~L~~V~D~vFs~k~mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGi----DTV   97 (169)
T PRK09439         22 EIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGI----DTV   97 (169)
T ss_pred             EEEecCCeEEEEhHHCCChHhcccCccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEee----ccc
Confidence            45566778777663 444322111100000112245899999999999885322111 11  13 23333321    011


Q ss_pred             EcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         236 HASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       236 ~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      .  -+|.=-+.++++||.|.+ ++|++++
T Consensus        98 ~--L~G~gF~~~Vk~Gd~Vk~G~~L~~~D  124 (169)
T PRK09439         98 E--LKGEGFKRIAEEGQRVKVGDPIIEFD  124 (169)
T ss_pred             c--cCCCceEEEecCCCEEeCCCEEEEEc
Confidence            1  224445788999999999 9999997

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=93.84  E-value=0.087  Score=49.12  Aligned_cols=33  Identities=33%  Similarity=0.489  Sum_probs=31.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|.||..|+|.+|+++.||.|..||+|++||
T Consensus       241 eieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        241 MNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             eeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            358999999999999999999999999999986

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=93.61  E-value=0.18  Score=43.58  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             CCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         201 PMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      .+.|.-.+.+|++||+|++||+|+...-
T Consensus        83 ~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl  110 (156)
T COG2190          83 KLNGEGFESLVKEGDKVKAGDPLLEFDL  110 (156)
T ss_pred             EECCcceEEEeeCCCEEccCCEEEEECH
Confidence            3445555568999999999999998764

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=93.59  E-value=0.08  Score=52.58  Aligned_cols=43  Identities=26%  Similarity=0.227  Sum_probs=35.7

Q ss_pred             EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEe
Q psy2807         204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRS  247 (288)
Q Consensus       204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~  247 (288)
                      |.--+..|++||+|++||+|+.-+. .....|.||++|+|++|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence            3445678999999999999998742 357899999999999875

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=93.44  E-value=0.25  Score=41.00  Aligned_cols=64  Identities=14%  Similarity=0.264  Sum_probs=40.2

Q ss_pred             CCeeecCCcEEEEEEecCCCCE-Eec--C-CEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQ-VKK--N-DVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~-V~~--G-~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .+.|.||..|+|..+.-..-.. ++.  | +.|..+..    .++.  .+|.=-+.++++||.|.+ ++|++++-
T Consensus        35 ~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGi----dTv~--l~g~gF~~~vk~Gd~V~~G~~l~~~D~  103 (124)
T cd00210          35 DGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGI----DTVK--LNGEGFTSHVEEGQRVKQGDKLLEFDL  103 (124)
T ss_pred             CCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeee----eeee--cCCCceEEEecCCCEEcCCCEEEEEcH
Confidence            5789999999998875432222 222  1 23333321    1122  234445788999999999 99999973

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=93.42  E-value=0.21  Score=51.54  Aligned_cols=91  Identities=20%  Similarity=0.226  Sum_probs=53.4

Q ss_pred             ceeeeeecCCceEEEEEeeccccccc------------------CCceEEEEEeCCEEEEEEEeccchhhhhh-ccccCC
Q psy2807         131 EEFSCEFKTGDTAYVTTLSISERLND------------------HGERTVFFLYNGQLRSVLIRDKNQAKKLK-LRSKAD  191 (288)
Q Consensus       131 ee~~v~~~~Gk~~~v~l~~~~~~~~~------------------~~~~~~~~~vnG~~~~v~v~~~~~~~~~~-~~~~a~  191 (288)
                      .+|.+++ +|+.+.|++...+ ....                  .....+.--+.|...++.+..+.....-. ..--..
T Consensus       473 ~~~~~~v-nG~~~~V~v~d~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEa  550 (582)
T TIGR01108       473 GSYTVEV-EGKAFVVKVSPGG-DVSQITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEA  550 (582)
T ss_pred             eEEEEEE-CCEEEEEEEcCCc-cccccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCCCCEECCCCEEEEEEe
Confidence            3688888 4999998886542 1110                  01123334444555555554432211100 000001


Q ss_pred             CCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807         192 SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL  223 (288)
Q Consensus       192 ~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l  223 (288)
                      -.....|.||.+|+|.++.+++||.|+.||+|
T Consensus       551 mKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       551 MKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             ccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            12346899999999999999999999999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=93.26  E-value=0.61  Score=40.78  Aligned_cols=30  Identities=27%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             ecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      +..+.|.=.+++|++||+|++||+|+.+.-
T Consensus        96 TV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439         96 TVELKGEGFKRIAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             ccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence            346778889999999999999999998874

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=93.17  E-value=0.12  Score=48.63  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|+||++|+|..+.+++|+.|..|++|+.|..
T Consensus       204 ~~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~  237 (334)
T TIGR00998       204 RTVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP  237 (334)
T ss_pred             CcEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence            4689999999999999999999999999998865

>TIGR02876 spore_yqfD sporulation protein YqfD

Probab=93.13  E-value=0.62  Score=45.62  Aligned_cols=58  Identities=26%  Similarity=0.245  Sum_probs=44.2

Q ss_pred             EEEEeCCEEEEEEEeccchhhhhhcccc-CCCCCCCeeecCCcEEEEEE-------ecCCCCEEecCCEEEE
Q psy2807         162 VFFLYNGQLRSVLIRDKNQAKKLKLRSK-ADSDTAGEIGAPMPGNIIEV-------KAKVGQQVKKNDVLIV  225 (288)
Q Consensus       162 ~~~~vnG~~~~v~v~~~~~~~~~~~~~~-a~~~~~~~i~apm~G~V~~v-------~V~~Gd~V~~G~~l~~  225 (288)
                      +.+++.|.+..+.+.....      .|. .....+.+|.|-..|.|.++       .|++||.|++||.|+.
T Consensus       158 V~v~i~GTrl~i~v~Ek~~------~p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs  223 (382)
T TIGR02876       158 AGVRVRGTTLVIKVVEKQE------PKPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS  223 (382)
T ss_pred             EEEEEEeEEEEEEEEecCC------CCCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence            5578888888888765421      122 23345789999999999998       5899999999999983

YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=92.88  E-value=0.14  Score=51.40  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.+|++++||.|+.||+|+.|+.
T Consensus       134 ~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~  167 (463)
T PLN02226        134 TIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK  167 (463)
T ss_pred             eeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence            4689999999999999999999999999999974

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=92.75  E-value=0.15  Score=48.61  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|+||+.|+|.++.+++|+.|..|++|+.|-.+
T Consensus       208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~  242 (346)
T PRK10476        208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDT  242 (346)
T ss_pred             cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecC
Confidence            46899999999999999999999999999988643

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=92.72  E-value=0.15  Score=49.78  Aligned_cols=32  Identities=25%  Similarity=0.433  Sum_probs=30.3

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..|+||+.|+|..+.+++|+.|..|++|+.|-
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv  247 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV  247 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence            58999999999999999999999999999874

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=92.72  E-value=0.34  Score=46.56  Aligned_cols=60  Identities=10%  Similarity=0.045  Sum_probs=43.2

Q ss_pred             EEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       205 ~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .+.-+.|+.|+.-..=..-..+++-+ +..|.|+.+|.|.++++++||.|.+ ++|+.|++.
T Consensus        35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   95 (370)
T PRK11578         35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   95 (370)
T ss_pred             ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            45555555555433322334444432 4689999999999999999999999 999999864

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=92.69  E-value=0.28  Score=48.28  Aligned_cols=60  Identities=8%  Similarity=-0.023  Sum_probs=48.9

Q ss_pred             EEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       205 ~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .|.-..++.|+.-..=+....+++. -+..|.++.+|.|.++++++||.|.+ ++|+.|++.
T Consensus        61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~  121 (415)
T PRK11556         61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR  121 (415)
T ss_pred             ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence            4555666777766555667788874 46789999999999999999999999 999999864

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=92.55  E-value=0.35  Score=41.73  Aligned_cols=96  Identities=14%  Similarity=0.197  Sum_probs=55.1

Q ss_pred             eEEEEEeCCEEEEE-EEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCC---CCEEecCCEEEE---Eecccee
Q psy2807         160 RTVFFLYNGQLRSV-LIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKV---GQQVKKNDVLIV---MSVMKTE  232 (288)
Q Consensus       160 ~~~~~~vnG~~~~v-~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~---Gd~V~~G~~l~~---lEamKme  232 (288)
                      ..++--++|+...+ .|+|.-.+..+-..--|-....+.|.||..|+|..++-..   |=.-..|--|++   |++-+  
T Consensus         6 ~~i~sP~~G~vv~Ls~VpD~vFs~k~mGdGiAI~P~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHiGiDTV~--   83 (156)
T COG2190           6 EEIYSPLSGEVVPLSDVPDPVFSEKMVGDGVAIKPSEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHIGIDTVK--   83 (156)
T ss_pred             EEEEccCCceEEEchhCCchHhhcccccCcEEEecCCCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEeceeeEE--
Confidence            34555677777766 3444322111100001222346899999999999874321   222223433332   12222  


Q ss_pred             EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                            .+|.-=+.++++||.|.. |+|.+++
T Consensus        84 ------L~GegF~~~v~~Gd~Vk~Gd~Li~fD  109 (156)
T COG2190          84 ------LNGEGFESLVKEGDKVKAGDPLLEFD  109 (156)
T ss_pred             ------ECCcceEEEeeCCCEEccCCEEEEEC
Confidence                  236666889999999999 9999987

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=92.53  E-value=0.17  Score=50.17  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=32.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|.||..|+|.++++++||.|+.||+|+.|+.-
T Consensus        87 ~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~  121 (418)
T PTZ00144         87 SVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG  121 (418)
T ss_pred             EEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence            46899999999999999999999999999999753

>TIGR02712 urea_carbox urea carboxylase

Probab=92.45  E-value=0.23  Score=55.35  Aligned_cols=69  Identities=19%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             ceEEEEEeCCEEEEEEEeccchhhhhh-ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         159 ERTVFFLYNGQLRSVLIRDKNQAKKLK-LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       159 ~~~~~~~vnG~~~~v~v~~~~~~~~~~-~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...+.-.+.|..+++.+..+.....-. ...-........|.||..|+|.++++++||.|+.||+|++||
T Consensus      1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            344556667777777766543221100 000001123467999999999999999999999999999986

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=92.38  E-value=0.18  Score=45.56  Aligned_cols=13  Identities=8%  Similarity=0.156  Sum_probs=6.6

Q ss_pred             EEEeCCEEEEEEE
Q psy2807         163 FFLYNGQLRSVLI  175 (288)
Q Consensus       163 ~~~vnG~~~~v~v  175 (288)
                      .--+||....+.+
T Consensus        92 ~AP~dG~V~~~~~  104 (265)
T TIGR00999        92 RSPFDGYITQKSV  104 (265)
T ss_pred             ECCCCeEEEEEEc
Confidence            4455565554433

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=92.23  E-value=0.13  Score=49.78  Aligned_cols=42  Identities=24%  Similarity=0.233  Sum_probs=33.2

Q ss_pred             EEEEecCCCCEEecCCEEEEEeccce--eEEEEcCCCeEEEEEeeCC
Q psy2807         206 IIEVKAKVGQQVKKNDVLIVMSVMKT--ETLIHASADGVHKVRSSNL  250 (288)
Q Consensus       206 V~~v~V~~Gd~V~~G~~l~~lEamKm--e~~I~Ap~~G~V~~i~v~~  250 (288)
                      =-+.+|++||.|++||+|++   .|-  -.-+.||.+|+|..|+-.+
T Consensus        40 rp~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~   83 (447)
T COG1726          40 RPSMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE   83 (447)
T ss_pred             CCcceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence            34578999999999999996   333  2469999999999887543

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=92.04  E-value=0.19  Score=46.11  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      .+.++..|.|.+++|++||.|++||.|+.++.
T Consensus        68 ~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          68 EVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            67888899999999999999999999999996

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=92.02  E-value=0.38  Score=46.60  Aligned_cols=59  Identities=8%  Similarity=-0.055  Sum_probs=47.4

Q ss_pred             EEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         206 IIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       206 V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      |.-..++.++....-+....+++-+ +..|.++.+|.|.++++++||.|.+ ++|+.|++.
T Consensus        36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~   95 (385)
T PRK09859         36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA   95 (385)
T ss_pred             eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence            4445666666555666677777554 6789999999999999999999999 999999864

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=91.96  E-value=0.23  Score=46.92  Aligned_cols=33  Identities=15%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|+||++|.|.++.+++|+.|..|++|+.|-
T Consensus       154 ~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv  186 (310)
T PRK10559        154 RTVIRAPADGWVTNLNVYTGEFITRGSTAVALV  186 (310)
T ss_pred             CCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence            468999999999999999999999999999764

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=91.95  E-value=0.4  Score=46.37  Aligned_cols=59  Identities=7%  Similarity=0.076  Sum_probs=45.5

Q ss_pred             EEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         206 IIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       206 V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      |.-..|+.++.-..-..-..+++. -+..|.++.+|+|.++++++||.|.+ ++|+.|++.
T Consensus        38 V~v~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~   97 (385)
T PRK09578         38 ATVVTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA   97 (385)
T ss_pred             eEEEEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence            334455556544444555677754 46789999999999999999999999 999999864

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=91.93  E-value=0.36  Score=40.54  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=34.1

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCC-----CeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASA-----DGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~-----~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..+.|.||..|+|..+.-.       +-.+..-..--.|.-|+=-.     +|.-=+.++++||.|.. ++|++++
T Consensus        38 ~~~~v~AP~~G~v~~i~~T-------~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D  106 (132)
T PF00358_consen   38 SDGKVYAPVDGTVTMIFPT-------KHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD  106 (132)
T ss_dssp             SSSEEEESSSEEEEEE-TT-------SSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred             CCCeEEEEeeEEEEEEcCC-------CCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence            3568999999999887532       11222111112222222111     24445678899999999 9999887

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>KOG3373|consensus

Probab=91.88  E-value=0.11  Score=45.11  Aligned_cols=44  Identities=23%  Similarity=0.278  Sum_probs=39.4

Q ss_pred             ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe
Q psy2807         210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN  253 (288)
Q Consensus       210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~  253 (288)
                      +=+.|..|.+|+.+..+|+.|.-.+|.+|++|+|++|+-+-.+.
T Consensus        87 LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En  130 (172)
T KOG3373|consen   87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN  130 (172)
T ss_pred             cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence            34789999999999999999999999999999999998766554

>KOG0559|consensus

Probab=91.86  E-value=0.14  Score=49.70  Aligned_cols=33  Identities=30%  Similarity=0.366  Sum_probs=31.0

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..|.||.+|+|.+++|++||.|+.||.|+.|+-
T Consensus       116 v~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~  148 (457)
T KOG0559|consen  116 VEVPSPASGVITELLVKDGDTVTPGQKLAKISP  148 (457)
T ss_pred             eeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence            468999999999999999999999999999985

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=91.82  E-value=0.68  Score=42.81  Aligned_cols=65  Identities=20%  Similarity=0.176  Sum_probs=50.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEE--EEEecc-c-eeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVL--IVMSVM-K-TETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l--~~lEam-K-me~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      ...+.||..| ++...++.||.|++||+|  ..+-.. - -..+++||.+|+|  +.....-.|.. +.|+.+
T Consensus       220 ~~~~~a~~~G-~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v  289 (292)
T PF04952_consen  220 PEWVRAPAGG-LFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKV  289 (292)
T ss_dssp             CCEEESSSSE-EEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEE
T ss_pred             ceeecCCccE-EEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEE
Confidence            4568999999 668899999999999999  654432 1 2358999999998  46667777777 777665

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.80  E-value=0.24  Score=47.64  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=30.0

Q ss_pred             CCeeecCCcEEEEEEec-CCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKA-KVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lE  227 (288)
                      ...|+||++|+|..+.+ ++|+.|..|++|+.|-
T Consensus       271 ~~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~  304 (423)
T TIGR01843       271 RLIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIV  304 (423)
T ss_pred             hcEEECCCCcEEEEEEEEccCceecCCCeeEEEe
Confidence            46899999999999986 7999999999999885

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=91.80  E-value=0.24  Score=48.73  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..|+||+.|.|.+..+++|+.|..|++|+.|..
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d  242 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG  242 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCEECCCCeEEEEEc
Confidence            479999999999999999999999999999865

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=91.71  E-value=0.32  Score=46.01  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=32.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|+||++|.|..+.+++|+.|..|++|+.|-.+
T Consensus       203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~  237 (331)
T PRK03598        203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT  237 (331)
T ss_pred             cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence            46899999999999999999999999999988653

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=91.69  E-value=0.16  Score=53.54  Aligned_cols=43  Identities=26%  Similarity=0.231  Sum_probs=34.9

Q ss_pred             EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEe
Q psy2807         204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRS  247 (288)
Q Consensus       204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~  247 (288)
                      |.--+..|++||+|.+||+|+.-.. -+...|+||++|+|..|.
T Consensus        46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence            3444578999999999999997543 246789999999999875

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=91.67  E-value=0.32  Score=33.80  Aligned_cols=31  Identities=26%  Similarity=0.446  Sum_probs=28.6

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      ..+.||..|++.+++++.|+.+..|++|+.+
T Consensus        44 ~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          44 VEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            5789999999999999999999999999864

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=91.62  E-value=0.3  Score=41.01  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=21.9

Q ss_pred             CCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         201 PMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      -+.|.-.+++|++||+|++||+|+.+.-
T Consensus        80 ~L~G~gF~~~v~~G~~V~~G~~L~~~D~  107 (132)
T PF00358_consen   80 KLNGEGFETLVKEGDKVKAGQPLIEFDL  107 (132)
T ss_dssp             GGTTTTEEESS-TTSEE-TTEEEEEE-H
T ss_pred             hcCCcceEEEEeCCCEEECCCEEEEEcH
Confidence            4667788999999999999999998874

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=91.62  E-value=0.4  Score=46.98  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..|+||+.|+|..+.+.+|+.|..|++|+.|.
T Consensus       254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~  285 (421)
T TIGR03794       254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE  285 (421)
T ss_pred             CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence            67999999999999999999999999999985

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=91.55  E-value=0.19  Score=50.87  Aligned_cols=39  Identities=23%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             EEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEe
Q psy2807         207 IEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRS  247 (288)
Q Consensus       207 ~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~  247 (288)
                      ....|++||+|.+||+|..=+.  -+..++||++|+|.+|.
T Consensus        45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            3578999999999999998776  66789999999999998

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.17  E-value=0.44  Score=40.27  Aligned_cols=51  Identities=22%  Similarity=0.310  Sum_probs=45.1

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEE-EEcCCCeEEEEE
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETL-IHASADGVHKVR  246 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~-I~Ap~~G~V~~i  246 (288)
                      .-+.-|..|.++..-+..|+.|++|++++-+.+=|-+.. +.+|.+|+|.-+
T Consensus        92 ~ll~iPvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi  143 (161)
T COG4072          92 ELLLIPVEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI  143 (161)
T ss_pred             EEEEEecCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence            345678999999999999999999999999999998876 999999998644

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=90.85  E-value=0.56  Score=45.74  Aligned_cols=56  Identities=7%  Similarity=-0.004  Sum_probs=41.8

Q ss_pred             ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      .|+.++.-..-.....+++.. +..|.|..+|.|.++++++||.|.+ ++|+.|++.+
T Consensus        44 ~v~~~~~~~~~~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~  100 (397)
T PRK15030         44 TVKTEPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT  100 (397)
T ss_pred             eeeEeecceeEEEEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence            344444333333445666643 6789999999999999999999999 9999998643

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=90.85  E-value=0.36  Score=45.37  Aligned_cols=34  Identities=9%  Similarity=-0.073  Sum_probs=31.2

Q ss_pred             eEEEEcCCC---eEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         232 ETLIHASAD---GVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       232 e~~I~Ap~~---G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      -..|.++.+   |+|.+|+|++||.|.+ ++|++|++.
T Consensus        13 ~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~   50 (327)
T TIGR02971        13 VVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR   50 (327)
T ss_pred             eEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence            346889999   9999999999999999 999999975

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=90.67  E-value=0.3  Score=45.19  Aligned_cols=38  Identities=11%  Similarity=0.059  Sum_probs=26.3

Q ss_pred             EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ..+++  =+..|.|+.+|.| ++++++||.|.+ ++|++|+.
T Consensus        15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~   53 (328)
T PF12700_consen   15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS   53 (328)
T ss_dssp             EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred             EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence            34444  3578999999999 999999999999 99999974

...

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=89.83  E-value=1.3  Score=46.06  Aligned_cols=20  Identities=30%  Similarity=0.607  Sum_probs=15.2

Q ss_pred             EecCCCCEEecCCEEEEEec
Q psy2807         209 VKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      .+|++||+|++||+|+...-
T Consensus       548 ~~v~~g~~V~~G~~l~~~d~  567 (610)
T TIGR01995       548 ILVKVGDHVKAGQLLLTFDL  567 (610)
T ss_pred             EEecCcCEEcCCCEEEEecH
Confidence            46788888888888887663

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=89.64  E-value=0.51  Score=46.63  Aligned_cols=35  Identities=29%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|.||..|+|.++++++||.|..|++|+.|+..
T Consensus        45 ~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~   79 (407)
T PRK05704         45 VLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG   79 (407)
T ss_pred             eeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            46899999999999999999999999999999864

>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities

Probab=88.85  E-value=0.98  Score=34.74  Aligned_cols=59  Identities=12%  Similarity=0.055  Sum_probs=30.5

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..|.||++|+|+.+.-..    .-|..+.+--...+.. +.+.    +..+.++.||.|.+ +.|+.+.
T Consensus        14 ~~V~A~~~G~V~~~~~~~----~~g~~V~i~~~~g~~~-~y~~----l~~~~v~~G~~V~~G~~IG~~g   73 (96)
T PF01551_consen   14 TPVYAPADGKVVFVGEDP----GYGNYVIIQHGNGYIT-VYGH----LDSVSVKVGDRVKAGQVIGTVG   73 (96)
T ss_dssp             -EEEESSSEEEEEEEEET----TTEEEEEEEETTSEEE-EEEE----ESEESS-TTSEE-TTCEEEEEB
T ss_pred             CEEEeCccEEEEEEEecc----CCccEEEEEeCCcCCE-EEec----cccccceecccccCCCEEEecC
Confidence            468888888887765422    1122232222222222 2222    34455778888888 8888776

The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=88.59  E-value=0.82  Score=46.92  Aligned_cols=68  Identities=18%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             eEEEEEeCCEEEEEEEeccchhhhhh-ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         160 RTVFFLYNGQLRSVLIRDKNQAKKLK-LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       160 ~~~~~~vnG~~~~v~v~~~~~~~~~~-~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..+..-+.|...++.|..+.....-. ..-...-.-...|+||-.|+|.++.|++||+|..|++|+.++
T Consensus       576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             CceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            34556666777777666543221100 000001123467999999999999999999999999999886

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=88.55  E-value=0.69  Score=45.67  Aligned_cols=35  Identities=26%  Similarity=0.361  Sum_probs=32.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|.||..|+|.++++++|+.|+.|++|+.|+..
T Consensus        43 ~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        43 VLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             eeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            46899999999999999999999999999999854

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=88.18  E-value=1.1  Score=46.89  Aligned_cols=64  Identities=13%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             eeecCCcEEEEEEecCCCCEEe---cCCEEEEEeccceeEEEEcCCCeEEEEE---------------------------
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVK---KNDVLIVMSVMKTETLIHASADGVHKVR---------------------------  246 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~---~G~~l~~lEamKme~~I~Ap~~G~V~~i---------------------------  246 (288)
                      .|.||+.|+++.+.=-+...-.   -|+-+++.-.   +..|.||++|+|..+                           
T Consensus       500 ~v~aP~~G~vi~l~~v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~  576 (648)
T PRK10255        500 ELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVA  576 (648)
T ss_pred             EEEecCCcEEEEcccCcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhc
Confidence            4677777777765322222221   1555555443   356777777766543                           


Q ss_pred             --------eeCCCCeecc-ceeEEEe
Q psy2807         247 --------SSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       247 --------~v~~Gd~V~~-~~L~~i~  263 (288)
                              ++++||.|.+ |+|++++
T Consensus       577 l~G~gF~~~Vk~Gd~V~~G~~l~~~D  602 (648)
T PRK10255        577 LEGKGFKRLVEEGAQVSAGQPILEMD  602 (648)
T ss_pred             cCCCCceEEecCCCEEcCCCEEEEEc
Confidence                    4789999999 9999987

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=88.16  E-value=1.5  Score=46.96  Aligned_cols=33  Identities=36%  Similarity=0.601  Sum_probs=30.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|.||..|+|.++.|+.||+|..||.|++++
T Consensus      1116 Et~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1116 ETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             ceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            457999999999999999999999999999875

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=88.08  E-value=1.8  Score=45.10  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=15.6

Q ss_pred             EecCCCCEEecCCEEEEEec
Q psy2807         209 VKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      .+|++||+|++||+|+..+-
T Consensus       564 ~~v~~Gd~V~~G~~l~~~D~  583 (627)
T PRK09824        564 AHVNVGDKVNTGDLLIEFDI  583 (627)
T ss_pred             EEecCCCEEcCCCEEEEEcH
Confidence            36778888888888887764

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=87.52  E-value=0.61  Score=45.31  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=29.5

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      ...|+||+.|.|.+..+.+||.|..|.+|+.+
T Consensus       208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~al  239 (352)
T COG1566         208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMAL  239 (352)
T ss_pred             CCEEECCCCceEEeecccCCCeecCCCceEEE
Confidence            45799999999999999999999999999854

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=87.31  E-value=3.3  Score=43.39  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=17.6

Q ss_pred             EecCCCCEEecCCEEEEEec
Q psy2807         209 VKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      .+|++||+|++||+|+...-
T Consensus       584 ~~Vk~Gd~V~~G~~l~~~D~  603 (648)
T PRK10255        584 RLVEEGAQVSAGQPILEMDL  603 (648)
T ss_pred             EEecCCCEEcCCCEEEEEcH
Confidence            36999999999999998874

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=87.25  E-value=0.81  Score=45.17  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|-||..|+|.++++++||.|.-|++|+.|+.-
T Consensus        45 ~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~   79 (404)
T COG0508          45 TMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEE   79 (404)
T ss_pred             eEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecC
Confidence            35789999999999999999999999999999863

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=86.78  E-value=1.3  Score=44.11  Aligned_cols=34  Identities=9%  Similarity=0.050  Sum_probs=30.9

Q ss_pred             EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      ..|.++.+|+|.+|+|++||.|.+ ++|+.|++..
T Consensus        60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~   94 (457)
T TIGR01000        60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN   94 (457)
T ss_pred             EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence            478999999999999999999999 9999998643

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=86.77  E-value=0.76  Score=34.75  Aligned_cols=29  Identities=38%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             eecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       198 i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..-|..|  +.++++.||.|++||+|++|=+
T Consensus        27 ~ID~~vG--i~l~~k~Gd~V~~Gd~l~~i~~   55 (75)
T PF07831_consen   27 PIDPAVG--IELHKKVGDRVEKGDPLATIYA   55 (75)
T ss_dssp             ---TT-E--EEESS-TTSEEBTTSEEEEEEE
T ss_pred             ccCcCcC--eEecCcCcCEECCCCeEEEEEc
Confidence            3335556  4589999999999999998854

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=86.53  E-value=1.3  Score=46.16  Aligned_cols=21  Identities=10%  Similarity=0.083  Sum_probs=18.2

Q ss_pred             EEEEeeCCCCeecc-ceeEEEe
Q psy2807         243 HKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       243 V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ==+.++++||.|.+ |+|++++
T Consensus       561 gF~~~v~~Gd~V~~G~~l~~~D  582 (627)
T PRK09824        561 FFTAHVNVGDKVNTGDLLIEFD  582 (627)
T ss_pred             CceEEecCCCEEcCCCEEEEEc
Confidence            34678899999999 9999997

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=86.19  E-value=2.5  Score=37.82  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=40.8

Q ss_pred             CCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc--ceeEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807         193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM--KTETLIHASADGVHKVRSSNLDYNFMR  256 (288)
Q Consensus       193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam--Kme~~I~Ap~~G~V~~i~v~~Gd~V~~  256 (288)
                      .++..+.||..|+|..+.--..+...++ .+.+.=.|  ...|.++||++|+|.++...+|...+.
T Consensus        51 ~~~~~i~SPaDG~v~~i~~v~d~~~~~~-~~~i~i~lsp~d~H~~~aP~~G~V~~~~~~~G~~~~~  115 (206)
T PRK05305         51 TDDGLVVSPADGKVVVIEEVVPPYGDEP-RLRISIFMSVFNVHVNRAPVSGTVTKVEYRPGKFLNA  115 (206)
T ss_pred             CCCCEEEeCCCcEEEEEEEECCCccCCc-eEEEEEEECcccCCEEEeCccCEEEEEEEECCeEEec
Confidence            4567799999999988854333222111 11111122  344788999999999999999985544

>PRK12784 hypothetical protein; Provisional

Probab=85.42  E-value=1.2  Score=34.22  Aligned_cols=33  Identities=12%  Similarity=-0.043  Sum_probs=30.5

Q ss_pred             EEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      +|.||.-|+|.++.+++++.|-. .+|+.|....
T Consensus         7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~d   40 (84)
T PRK12784          7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNN   40 (84)
T ss_pred             hhcCccccEEEEEEEcCCceEEeeeeeeEEeecC
Confidence            59999999999999999999999 9999998655

>KOG0369|consensus

Probab=84.48  E-value=2.7  Score=44.22  Aligned_cols=93  Identities=15%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             eeeeeecCCceEEEEEeeccc--------ccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccC---CCCCCCeeec
Q psy2807         132 EFSCEFKTGDTAYVTTLSISE--------RLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKA---DSDTAGEIGA  200 (288)
Q Consensus       132 e~~v~~~~Gk~~~v~l~~~~~--------~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a---~~~~~~~i~a  200 (288)
                      ++.+++ +|+-..|.+.....        ..+.....++---+-|....++|..+.....  ..|-+   .-.-...|.|
T Consensus      1072 eVfFeL-NGqlR~i~v~Dk~a~ke~v~~PkA~~~~~g~igAPMpG~vieikvk~G~kV~K--gqpl~VLSAMKMEmVv~s 1148 (1176)
T KOG0369|consen 1072 EVFFEL-NGQLRSIRVADKEAAKEIVTRPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKK--GQPLAVLSAMKMEMVISS 1148 (1176)
T ss_pred             EEEEEe-cCceeeEEeechhhhhhhcccccCCCCCcccccCCCCCceEEEEEecCceecC--CCceEeeecceeeeeecC
Confidence            566777 48877777643210        0011111222233445555666654322111  11111   1123457899


Q ss_pred             CCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         201 PMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       201 pm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      |+.|+|.++.+..|+.|..||.+++||
T Consensus      1149 P~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1149 PHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred             CCCceeeEEEecCCCcccccceEEEcc
Confidence            999999999999999999999999987

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=83.25  E-value=1.8  Score=42.86  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...+.||..|+|.+|++++|+.|+.|++|+.|+.
T Consensus        41 ~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~   74 (416)
T PLN02528         41 TIEITSRYKGKVAQINFSPGDIVKVGETLLKIMV   74 (416)
T ss_pred             eEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence            4678999999999999999999999999999974

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=82.51  E-value=2  Score=42.21  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.2

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK  230 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK  230 (288)
                      ..|.||..|+|.++.+++|+.|..|++|+.|+...
T Consensus        46 ~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~   80 (411)
T PRK11856         46 VEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG   80 (411)
T ss_pred             EEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence            57999999999999999999999999999997543

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=82.46  E-value=8.3  Score=31.89  Aligned_cols=63  Identities=14%  Similarity=0.251  Sum_probs=37.6

Q ss_pred             CCeeecCCcEEEEEEecCCCCE-Ee--cC-CEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQ-VK--KN-DVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~-V~--~G-~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      .+.|.||..|+|..+.-..-.. ++  .| +.|..+--    .++.-  +|.=-+.++++||.|.+ ++|++++
T Consensus        35 ~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGi----dTV~L--~G~gF~~~v~~Gd~V~~G~~l~~~D  102 (121)
T TIGR00830        35 DGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGI----DTVKL--NGEGFTSHVEEGQRVKKGDPLLEFD  102 (121)
T ss_pred             CCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeee----ceeec--CCCceEEEecCCCEEcCCCEEEEEc
Confidence            4789999999998875422111 11  12 22333221    11111  23345778999999999 9999987

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=82.10  E-value=3.4  Score=43.03  Aligned_cols=65  Identities=18%  Similarity=0.296  Sum_probs=39.0

Q ss_pred             CCCeeecCCcEEEEEEecCCCCE-Ee--cC-CEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQ-VK--KN-DVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~-V~--~G-~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ..+.|.||..|+|..+.=..=.- ++  .| +.|..+--   + ++.  -+|.--+.++++||.|.+ |+|.+++-
T Consensus       498 ~~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGi---d-Tv~--l~g~gF~~~v~~g~~V~~G~~l~~~d~  567 (610)
T TIGR01995       498 TEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGI---D-TVE--LNGEGFEILVKVGDHVKAGQLLLTFDL  567 (610)
T ss_pred             CCCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEecc---c-hhc--cCCCCeEEEecCcCEEcCCCEEEEecH
Confidence            45789999999998874321111 11  12 22322221   0 111  224445788999999999 99999973

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=81.57  E-value=1.4  Score=36.38  Aligned_cols=29  Identities=28%  Similarity=0.426  Sum_probs=24.4

Q ss_pred             cCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         200 APMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..+.|.=.+++|++||+|++||+|+.+.-
T Consensus        75 V~L~G~gF~~~v~~Gd~V~~G~~l~~~D~  103 (121)
T TIGR00830        75 VKLNGEGFTSHVEEGQRVKKGDPLLEFDL  103 (121)
T ss_pred             eecCCCceEEEecCCCEEcCCCEEEEEcH
Confidence            34566778899999999999999998863

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=81.52  E-value=4.3  Score=37.10  Aligned_cols=43  Identities=9%  Similarity=-0.031  Sum_probs=34.5

Q ss_pred             CEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         221 DVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       221 ~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .....+++ .-...|.++..|.|.++++++||.|.. ++|+.+++
T Consensus        56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            33444554 333478888999999999999999999 99999987

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=80.99  E-value=4.3  Score=36.28  Aligned_cols=59  Identities=8%  Similarity=0.098  Sum_probs=43.6

Q ss_pred             ecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc--ceeEEE
Q psy2807         199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR--PLQLSL  262 (288)
Q Consensus       199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~--~~L~~i  262 (288)
                      .+-+.+.|.. .+++|+.+++||.+..++-- ....+.-|.+   .++.+++||.|..  ++|+.+
T Consensus       145 ~~~~~r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~~  205 (206)
T PRK05305        145 AGLIARRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLARL  205 (206)
T ss_pred             CeEEccEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEEc
Confidence            3344455544 57899999999999988743 4666777766   2789999999998  566654

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=80.63  E-value=2.4  Score=42.30  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             CeeecCCcEEEEEEecCCCCE-EecCCEEEEEecc
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQ-VKKNDVLIVMSVM  229 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~-V~~G~~l~~lEam  229 (288)
                      ..|.||..|+|.++++++|+. |..|++|++|+..
T Consensus        43 ~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~   77 (435)
T TIGR01349        43 MEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEE   77 (435)
T ss_pred             eEEcCCCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence            689999999999999999999 9999999999764

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK03934 phosphatidylserine decarboxylase; Provisional

Probab=80.07  E-value=11  Score=35.07  Aligned_cols=62  Identities=13%  Similarity=-0.044  Sum_probs=40.0

Q ss_pred             CCCeeecCCcEEEEEE-ecCCCCEEe---------------------cCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC
Q psy2807         194 TAGEIGAPMPGNIIEV-KAKVGQQVK---------------------KNDVLIVMSVMKTETLIHASADGVHKVRSSNLD  251 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v-~V~~Gd~V~---------------------~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G  251 (288)
                      ++..|.||..|+|..+ .+++++...                     .|..+..-=+-...|-++||++|+|.+...-+|
T Consensus        68 ~~~~ivSPaDG~v~~~~~i~~~~~~~vKg~~y~l~~lL~~~~~~~~~~g~~~~iyLsp~dYHr~hsP~~G~v~~~~~ipG  147 (265)
T PRK03934         68 DPNIFISPCDSLITECGSLEEDKALQIKGMEYSIEELLGESNSELVNGFDYINFYLSPKDYHRYHAPCDLEILEARYIPG  147 (265)
T ss_pred             CCCEEEECCCcEEEEEEEECCCCEEEECCccccHHHHcCCcchhhcCCcEEEEEEECcceEEEEeccCCcEEEEEEEcCC
Confidence            3456777777777776 455554321                     233333323455678899999999999988888


Q ss_pred             Ceec
Q psy2807         252 YNFM  255 (288)
Q Consensus       252 d~V~  255 (288)
                      +.-+
T Consensus       148 ~~~~  151 (265)
T PRK03934        148 KLYP  151 (265)
T ss_pred             eeec
Confidence            7443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
3bg3_A	718	Crystal Structure Of Human Pyruvate Carboxylase (Mi		3e-34
3bg9_A	718	Crystal Structure Of Human Pyruvate Carboxylase (Mi		3e-33
3hb9_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		5e-24
3hbl_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		5e-24
3ho8_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		5e-24
4hnu_A	1173	Crystal Structure Of K442e Mutant Of S. Aureus Pyru		5e-24
4hnv_A	1173	Crystal Structure Of R54e Mutant Of S. Aureus Pyruv		5e-24
4hnt_A	1173	Crystal Structure Of F403a Mutant Of S. Aureus Pyru		5e-24
3bg5_A	1173	Crystal Structure Of Staphylococcus Aureus Pyruvate		6e-24
3tw7_A	1165	Structure Of Rhizobium Etli Pyruvate Carboxylase T8		3e-23
2qf7_A	1165	Crystal Structure Of A Complete Multifunctional Pyr		3e-23
3n6r_A	681	Crystal Structure Of The Holoenzyme Of Propionyl-co		2e-04

>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing The Biotin Carboxylase Domain At The N-Terminus) Length = 718

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 120/232 (51%), Gaps = 44/232 (18%)
Query: 62  FPKSVSAFFQGSIGEPYQGFPKKLQEKVLG-------------------SLKDHTLDRKP 102
           FP+SV  F QG IG P+ GFP+  + KVL                    +L+   +DR  
Sbjct: 480 FPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHG 539
Query: 103 ECDLMMED-------------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143
           E ++  ED                    FGP+D L TR+FL GP I EEF  E + G T 
Sbjct: 540 E-EVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTL 598
Query: 144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMP 203
           ++  L++S+ LN  G+R VFF  NGQLRS+L++D    K++    KA  D  G+IGAPMP
Sbjct: 599 HIKALAVSD-LNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMP 657
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG----VHKVRSSNLD 251
           G +I++K   G +V K   L V+S MK ET++ +  +G    VH  +   L+
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLE 709

>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing The Biotin Carboxylase Domain At The N-Terminus) F1077a Mutant Length = 718

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 119/232 (51%), Gaps = 44/232 (18%)
Query: 62  FPKSVSAFFQGSIGEPYQGFPKKLQEKVLG-------------------SLKDHTLDRKP 102
           FP+SV  F QG IG P+ GFP+  + KVL                    +L+   +DR  
Sbjct: 480 FPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHG 539
Query: 103 ECDLMMED-------------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143
           E ++  ED                    FGP+D L TR+FL GP I EEF  E + G T 
Sbjct: 540 E-EVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTL 598
Query: 144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMP 203
           ++  L++S+ LN  G+R V F  NGQLRS+L++D    K++    KA  D  G+IGAPMP
Sbjct: 599 HIKALAVSD-LNRAGQRQVAFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMP 657
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG----VHKVRSSNLD 251
           G +I++K   G +V K   L V+S MK ET++ +  +G    VH  +   L+
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLE 709

>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51   KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
            + V+ +  K+ FP+SV +FF+G IG+P  GF K LQ  +L   +  T         +D +
Sbjct: 897  QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 956
Query: 102  PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
               +L+ E++ GPV                              L T  F  G   GE  
Sbjct: 957  KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1016
Query: 134  SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
              E   G    +   +ISE  +++G RT+++  NGQ R + I+D+N      ++ KAD  
Sbjct: 1017 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 194  TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
                IGA MPG++ EVK  VG+ VK N  L++   MK ET I A  DGV K  + N
Sbjct: 1076 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1131

>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51   KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
            + V+ +  K+ FP+SV +FF+G IG+P  GF K LQ  +L   +  T         +D +
Sbjct: 897  QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 956
Query: 102  PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
               +L+ E++ GPV                              L T  F  G   GE  
Sbjct: 957  KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1016
Query: 134  SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
              E   G    +   +ISE  +++G RT+++  NGQ R + I+D+N      ++ KAD  
Sbjct: 1017 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 194  TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
                IGA MPG++ EVK  VG+ VK N  L++   MK ET I A  DGV K  + N
Sbjct: 1076 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1131

>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51   KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
            + V+ +  K+ FP+SV +FF+G IG+P  GF K LQ  +L   +  T         +D +
Sbjct: 897  QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 956
Query: 102  PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
               +L+ E++ GPV                              L T  F  G   GE  
Sbjct: 957  KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1016
Query: 134  SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
              E   G    +   +ISE  +++G RT+++  NGQ R + I+D+N      ++ KAD  
Sbjct: 1017 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 194  TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
                IGA MPG++ EVK  VG+ VK N  L++   MK ET I A  DGV K  + N
Sbjct: 1076 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1131

>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51   KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
            + V+ +  K+ FP+SV +FF+G IG+P  GF K LQ  +L   +  T         +D +
Sbjct: 920  QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 979
Query: 102  PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
               +L+ E++ GPV                              L T  F  G   GE  
Sbjct: 980  KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1039
Query: 134  SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
              E   G    +   +ISE  +++G RT+++  NGQ R + I+D+N      ++ KAD  
Sbjct: 1040 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 194  TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
                IGA MPG++ EVK  VG+ VK N  L++   MK ET I A  DGV K  + N
Sbjct: 1099 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1154

>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51   KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
            + V+ +  K+ FP+SV +FF+G IG+P  GF K LQ  +L   +  T         +D +
Sbjct: 920  QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 979
Query: 102  PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
               +L+ E++ GPV                              L T  F  G   GE  
Sbjct: 980  KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1039
Query: 134  SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
              E   G    +   +ISE  +++G RT+++  NGQ R + I+D+N      ++ KAD  
Sbjct: 1040 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 194  TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
                IGA MPG++ EVK  VG+ VK N  L++   MK ET I A  DGV K  + N
Sbjct: 1099 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1154

>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51   KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
            + V+ +  K+ FP+SV +FF+G IG+P  GF K LQ  +L   +  T         +D +
Sbjct: 920  QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 979
Query: 102  PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
               +L+ E++ GPV                              L T  F  G   GE  
Sbjct: 980  KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1039
Query: 134  SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
              E   G    +   +ISE  +++G RT+++  NGQ R + I+D+N      ++ KAD  
Sbjct: 1040 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 194  TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
                IGA MPG++ EVK  VG+ VK N  L++   MK ET I A  DGV K  + N
Sbjct: 1099 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1154

>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51   KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
            + V+ +  K+ FP+SV +FF+G IG+P  GF K LQ  +L   +  T         +D +
Sbjct: 920  QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 979
Query: 102  PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
               +L+ E++ GPV                              L T  F  G   GE  
Sbjct: 980  KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1039
Query: 134  SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
              E   G    +   +ISE  +++G RT+++  NGQ R + I+D+N      ++ KAD  
Sbjct: 1040 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 194  TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
                IGA MPG++ EVK  VG+ VK N  L++   MK ET I A  DGV K  + N
Sbjct: 1099 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1154

>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a Crystallized Without Acetyl Coenzyme-A Length = 1165

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 43/234 (18%)
Query: 48   IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP----- 102
            +   DV+    ++ FP+SV +  +G +G+P  G+P+ LQ+K L   K +T+  +P     
Sbjct: 911  LTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTV--RPGSLLK 968
Query: 103  ECDL----------------------------------MMEDEFGPVDRLPTRIFLNGPN 128
            E DL                                  +  D +GPV  LPT  +  G  
Sbjct: 969  EADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLA 1028
Query: 129  IGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQ-AKKLKLR 187
             GEE   + + G T  +   ++S   +  G  TVFF  NGQ R + + D+   A    +R
Sbjct: 1029 DGEELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVR 1087
Query: 188  SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
             KA+   A  +GAPMPG I  V    GQ V   DVL+ +  MK ET IHA  DG
Sbjct: 1088 RKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDG 1141

>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 43/234 (18%)
Query: 48   IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP----- 102
            +   DV+    ++ FP+SV +  +G +G+P  G+P+ LQ+K L   K +T+  +P     
Sbjct: 911  LTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTV--RPGSLLK 968
Query: 103  ECDL----------------------------------MMEDEFGPVDRLPTRIFLNGPN 128
            E DL                                  +  D +GPV  LPT  +  G  
Sbjct: 969  EADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLA 1028
Query: 129  IGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQ-AKKLKLR 187
             GEE   + + G T  +   ++S   +  G  TVFF  NGQ R + + D+   A    +R
Sbjct: 1029 DGEELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVR 1087
Query: 188  SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
             KA+   A  +GAPMPG I  V    GQ V   DVL+ +  MK ET IHA  DG
Sbjct: 1088 RKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDG 1141

>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 173 VLIRDKNQAKKLKLR-SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
           V +R   QA+  +L   K   DT+  +  PMPG I++V  +VGQ+V++   L  +  MK 
Sbjct: 589 VHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKM 648
Query: 232 ETLIHASADGV 242
           E ++ A   GV
Sbjct: 649 ENILRAEKKGV 659

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	3e-62
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	5e-60
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	4e-56
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	8e-20
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	8e-19
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	2e-17
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	3e-17
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	5e-17
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	5e-16
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	6e-15
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	1e-14
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	2e-11
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	1e-10
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	5e-10
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	7e-07

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score =  211 bits (539), Expect = 3e-62
 Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 38/232 (16%)

Query: 48   IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------- 97
            +  + V+ +  K+ FP+SV +FF+G IG+P  GF K LQ  +L   +  T          
Sbjct: 894  LDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPV 953

Query: 98   ------------LDRKP-ECDLMM--------------EDEFGPVDRLPTRIFLNGPNIG 130
                              E D++                +++G +  L T  F  G   G
Sbjct: 954  DFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNG 1013

Query: 131  EEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKA 190
            E    E   G    +   +ISE  +++G RT+++  NGQ R + I+D+N      ++ KA
Sbjct: 1014 ETVEIEIDKGKRLIIKLETISE-PDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKA 1072

Query: 191  DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
            D      IGA MPG++ EVK  VG+ VK N  L++   MK ET I A  DGV
Sbjct: 1073 DKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGV 1124

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score =  205 bits (523), Expect = 5e-60
 Identities = 70/233 (30%), Positives = 103/233 (44%), Gaps = 39/233 (16%)

Query: 48   IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------- 97
            +   DV+    ++ FP+SV +  +G +G+P  G+P+ LQ+K L   K +T          
Sbjct: 911  LTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEA 970

Query: 98   ------------LDRKP-ECDLMM--------------EDEFGPVDRLPTRIFLNGPNIG 130
                        L+R+  + +                  D +GPV  LPT  +  G   G
Sbjct: 971  DLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADG 1030

Query: 131  EEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQA-KKLKLRSK 189
            EE   + + G T  +   ++S   +  G  TVFF  NGQ R + + D+        +R K
Sbjct: 1031 EELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVRRK 1089

Query: 190  ADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
            A+   A  +GAPMPG I  V    GQ V   DVL+ +  MK ET IHA  DG 
Sbjct: 1090 AEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGT 1142

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score =  191 bits (487), Expect = 4e-56
 Identities = 81/232 (34%), Positives = 116/232 (50%), Gaps = 38/232 (16%)

Query: 48  IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLG-----------SLKDH 96
           +   +    A+++ FP+SV  F QG IG P+ GFP+  + KVL            SL   
Sbjct: 466 LSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPL 525

Query: 97  TLDR------------KPECDLMM--------------EDEFGPVDRLPTRIFLNGPNIG 130
            L                  D++                  FGP+D L TR+FL GP I 
Sbjct: 526 DLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIA 585

Query: 131 EEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKA 190
           EEF  E + G T ++  L++S+ LN  G+R VFF  NGQLRS+L++D    K++    KA
Sbjct: 586 EEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKA 644

Query: 191 DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
             D  G+IGAPMPG +I++K   G +V K   L V+S MK ET++ +  +G 
Sbjct: 645 LKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGT 696

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 80.4 bits (199), Expect = 8e-20
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           + A     GEI AP+ G + ++  K G  VK    ++V+  MK ET I+A  DG 
Sbjct: 1   AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGK 55

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 78.2 bits (193), Expect = 8e-19
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 176 RDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLI 235
              +            S T+  + +PMPG ++ V  K G  V +   + V+  MK +  +
Sbjct: 6   HHSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSM 65

Query: 236 HASADGV 242
            A   G 
Sbjct: 66  TAGKTGT 72

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 22/55 (40%), Positives = 28/55 (50%)

Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
             +  +T G   APM G I +V  K G +VK  D L+VM  MK E  I +  DG 
Sbjct: 7   GVSSQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGT 61

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Length = 539

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 56/178 (31%)

Query: 56  NADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP------------- 102
             +        +    G  G        K+ +          + ++P             
Sbjct: 376 MGEYKRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSK 435

Query: 103 -----------ECDLMM-------------EDEFGPVDRLPTRIFLNGPNIGEEFSCEFK 138
                      + D++                  GP     T   L     G+E S    
Sbjct: 436 EAATLKGFNGTDEDVLTYALFPQVAPVFFEHRAEGPHSVALTDAQLKAEAEGDEKSLAVA 495

Query: 139 TGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG 196
                              G  T      G +R V ++   +A + +L  +   D   
Sbjct: 496 -------------------GPVTYNVNVGGTVREVTVQQATRASQPELAPEDPEDLEH 534

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 73.0 bits (180), Expect = 5e-17
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
            +   + APMPG ++ V  +VG +V+    L+V+  MK E  I +  DGV
Sbjct: 3   VSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGV 52

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score = 77.0 bits (190), Expect = 5e-16
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAPMPGNIIEVKAKVGQQV 217
                    G    V +R   QA+  +L   K   DT+  +  PMPG I++V  +VGQ+V
Sbjct: 575 SGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEV 634

Query: 218 KKNDVLIVMSVMKTETLIHASADGV 242
           ++   L  +  MK E ++ A   GV
Sbjct: 635 QEGQALCTIEAMKMENILRAEKKGV 659

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 67.2 bits (165), Expect = 6e-15
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           +   M GN+ +V  K G Q++K   + ++  MK E  I A   G+
Sbjct: 2   VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGI 46

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 191 DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           ++D    + +P  G + +   + G  V+       M VMK    ++    G 
Sbjct: 2   END-PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGR 52

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 192  SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG-VHKVR 246
             D A  + +   G   +  A VG  V+  D +I++  MKTE ++ A+  G V+K+ 
Sbjct: 1164 PDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKIL 1219

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 54.8 bits (132), Expect = 5e-10
 Identities = 9/53 (16%), Positives = 18/53 (33%)

Query: 190 ADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
              +    + +P  G + +   + G  V+       M VMK    ++    G 
Sbjct: 12  EKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGR 64

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Length = 464

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 9/39 (23%), Positives = 14/39 (35%)

Query: 53  VMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLG 91
           V+         K  S   +G  G+       +LQ +VL 
Sbjct: 356 VVLGERYKTITKETSGVLKGEYGKTPAPVNTELQARVLA 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	100.0
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	100.0
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	100.0
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	99.84
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	99.82
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.82
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.75
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.66
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.64
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.63
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.62
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.6
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.59
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.59
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.58
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.58
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.56
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.55
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.55
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.54
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.52
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.52
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.51
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.51
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.5
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.49
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.48
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.43
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	99.21
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	99.14
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.13
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.1
1hpc_A	131	H protein of the glycine cleavage system; transit	98.87
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.76
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.73
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	98.48
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.47
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.45
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.43
3klr_A	125	Glycine cleavage system H protein; antiparallel be	98.32
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	98.23
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	98.11
3mxu_A	143	Glycine cleavage system H protein; seattle structu	98.11
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.97
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	97.73
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.72
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	97.68
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	97.68
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	97.64
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	97.44
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	97.06
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	97.03
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	96.95
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	96.92
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.9
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	96.83
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	96.77
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	96.69
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.62
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	96.54
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	96.3
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	96.29
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	96.26
2qj8_A	332	MLR6093 protein; structural genomics, joint center	96.08
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	95.9
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	95.65
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	95.65
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	95.54
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	95.52
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	95.44
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	95.44
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	95.33
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	95.22
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	95.18
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	95.17
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	94.9
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	94.87
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	94.66
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	94.64
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	94.16
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	93.99
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	93.82
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	93.25
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	92.5
3our_B	183	EIIA, phosphotransferase system IIA component; exh	92.14
3our_B	183	EIIA, phosphotransferase system IIA component; exh	92.03
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	91.88
2xha_A	193	NUSG, transcription antitermination protein NUSG;	91.39
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	90.22
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	89.15
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	88.62
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	87.92
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	87.41
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	87.2
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	87.19
2xha_A	193	NUSG, transcription antitermination protein NUSG;	87.04
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	85.84
2bco_A	350	Succinylglutamate desuccinylase; NESG, VPR14, stru	83.38
3it5_A	182	Protease LASA; metallopeptidase, beta-protein, cel	81.47

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=100.00  E-value=2.7e-53  Score=454.11  Aligned_cols=243  Identities=30%  Similarity=0.463  Sum_probs=221.1

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      .++|||||||||||||||||+|||+|+|+++++.++++.++||+|+++||+|+||+||+|||++|++++|+|++++    
T Consensus       867 ~~~g~~~~vtp~sq~vg~~a~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~~~~rp  946 (1150)
T 3hbl_A          867 FLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARP  946 (1150)
T ss_dssp             HHTTSCCCCTTHHHHHHHHHHHHHHTTCCTTHHHHSGGGCCCCHHHHHHTTTSSCCCTTCCCHHHHHHHHTTCCCCSSCG
T ss_pred             HHcCCCceECchhHHHHHHHHHHHHcCCChhhhhcccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhcCCCCccCCc
Confidence            3689999999999999999999999999999999888889999999999999999999999999999999998776    


Q ss_pred             ---c--------ccc--------CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807          97 ---T--------LDR--------KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA  143 (288)
Q Consensus        97 ---L--------~~~--------~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~  143 (288)
                         |        +++        .++||+|.|+              .||+++.|||+.||+|++.||++++++++||++
T Consensus       947 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 1026 (1150)
T 3hbl_A          947 GEYLEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRL 1026 (1150)
T ss_dssp             GGGSCCCCHHHHHHHHHHHSCSCCCHHHHHHHHHSHHHHHHHHHHHHHHCCGGGSCHHHHHHCCCTTCEEEEEEETTEEE
T ss_pred             cccCChhhHHHHHHHHHHhhCCCCCHHHHHHHHcCCHHHHHHHHHHHhcCCcccCCchhhhcCCCCCceEEEEccCCcEE
Confidence               1        111        4789999544              478999999999999999999999999999999


Q ss_pred             EEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807         144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL  223 (288)
Q Consensus       144 ~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l  223 (288)
                      .|++.+++ .+++.|.++++|++||+.+++.|.+..........+++++.+..+|.|||+|+|++|+|++||.|++||+|
T Consensus      1027 ~i~l~~~~-~~~~~g~~~~~~e~nG~~~~v~v~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l 1105 (1150)
T 3hbl_A         1027 IIKLETIS-EPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPL 1105 (1150)
T ss_dssp             EEEEEEEC-CCCTTSEEEEEEEETTEEEEEEEECCCSSSCCCCCCBCCTTCSSEEECSSSEEEEEECCCTTCEECTTCEE
T ss_pred             EEEecccC-CCCCCCceEEEEEECCeEEEEecccccccccccccccCCCCCCceeecCceEEEEEEEeCCCCEECCCCEE
Confidence            99999998 78888999999999999999999987643333344667777889999999999999999999999999999


Q ss_pred             EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ++|||||||++|+||.+|+|.++++++||.|.. ++|++|++
T Consensus      1106 ~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1106 LITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp             EEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred             EEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            999999999999999999999999999999999 99999975

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=100.00  E-value=1.2e-49  Score=407.82  Aligned_cols=241  Identities=36%  Similarity=0.591  Sum_probs=214.1

Q ss_pred             CCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc-----
Q psy2807          22 TSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH-----   96 (288)
Q Consensus        22 ~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i-----   96 (288)
                      ++||+++|||+||+|||||+|||+|.|+.+++.++.+.++||+|+++||+|+||+||+|||++|++++|+|++++     
T Consensus       440 ~lG~~~~Vtp~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~  519 (718)
T 3bg3_A          440 MLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPG  519 (718)
T ss_dssp             HTTSCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHTTTCCCCHHHHHHTTTSSCCCSSCCCHHHHHHHHSSSCCCCSCHH
T ss_pred             HcCCCccCCcHhHHHHHHHHHHHHcCCChHHhccccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCCCCcc
Confidence            699999999999999999999999999999999888889999999999999999999999999999999998877     


Q ss_pred             --cc--------cc--------CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceEE
Q psy2807          97 --TL--------DR--------KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAY  144 (288)
Q Consensus        97 --L~--------~~--------~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~  144 (288)
                        |.        ++        .++||+|.|+              .||+++.|||+.||+|++.++++.+++++||+|.
T Consensus       520 ~~l~~~d~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~v~i~~Gk~~~  599 (718)
T 3bg3_A          520 ASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLH  599 (718)
T ss_dssp             HHSCCCCSSHHHHHHHHHTCSCCCHHHHHHHHHCHHHHHHHHHHHHHSCCCTTSCHHHHHHCCCBTCEEEEECTTSCEEE
T ss_pred             ccCCcccHHHHHHHHHHHhccCCCHHHHHHHHhCchhHHHHHHHHHhcCCcccCcchhhhcCCCcCceeeeecccCceeE
Confidence              11        11        4779999555              4789999999999999999999999999999999


Q ss_pred             EEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEE
Q psy2807         145 VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLI  224 (288)
Q Consensus       145 v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~  224 (288)
                      +++.+++ +++..+.+++++++||+++++.+.+.........++++++.+...|.|||+|+|++|.|++||.|++||+|+
T Consensus       600 i~l~~i~-~~~~~g~~~~~vevnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~  678 (718)
T 3bg3_A          600 IKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLC  678 (718)
T ss_dssp             EEEEEEE-EECTTSEEEEEEESSSSEEEEEEECGGGTCC-----CCCCCSSSCEECSSCEEEEEECSCTTCCBCTTCCCE
T ss_pred             EEecccC-CcccCCcEEEEEEECCEEEEEEEeccCccccccccccCCCCCCceEeCCCCeEEEEEEeCCCCeeCCCCEEE
Confidence            9999888 677788899999999999999998764321112234555666789999999999999999999999999999


Q ss_pred             EEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         225 VMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       225 ~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      +|||||||++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus       679 ~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  718 (718)
T 3bg3_A          679 VLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE  718 (718)
T ss_dssp             EEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred             EEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence            99999999999999999999999999999999 9998763

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=100.00  E-value=1e-48  Score=419.26  Aligned_cols=242  Identities=29%  Similarity=0.422  Sum_probs=211.2

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      ..+||++|||||||||||||+|||+|.|+.+++.++.+.++||+|+++|++|+||+||+|||++|++++|++++++    
T Consensus       884 ~~~G~~~~vtp~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp  963 (1165)
T 2qf7_A          884 QMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRP  963 (1165)
T ss_dssp             HHTTSCCCSTTHHHHHHHHHHHHHHHTCCHHHHHCTTSCCCCCHHHHHHHHTTTCCCTTCCCHHHHHHHHTTCCCCCSCG
T ss_pred             HHcCCCccCCChhHHHHHHHHHHHHcCCChhhhccccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCcCcCCc
Confidence            4689999999999999999999999999999999888889999999999999999999999999999999998776    


Q ss_pred             ---cc--------cc--------CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807          97 ---TL--------DR--------KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA  143 (288)
Q Consensus        97 ---L~--------~~--------~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~  143 (288)
                         |.        ++        .++||+|.|+              .||+++.|||+.||+|++.++++.+++++||++
T Consensus       964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~ 1043 (1165)
T 2qf7_A          964 GSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTL 1043 (1165)
T ss_dssp             GGGSCCCCHHHHHHHHHHHHTSCCCHHHHHHHHHCHHHHHHHHHHHHHHCCGGGSCHHHHHHCCCTTCEEEEEEETTEEE
T ss_pred             cccCCcccHHHHHHHHHHhhcCCCCHHHHHHHHcCcHHHHHHHHHHHhcCCcccCCchhhhcCCCcCceeeecccCCccc
Confidence               11        11        4779999555              478999999999999999999999999999999


Q ss_pred             EEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhh-hhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCE
Q psy2807         144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAK-KLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDV  222 (288)
Q Consensus       144 ~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~-~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~  222 (288)
                      .+++.+++ ++++.|.++++|++||++++|.+.+..... .....+++++.+...|.|||+|+|++|.|++||.|++||+
T Consensus      1044 ~~~~~~~~-~~~~~g~~~~~~evnG~~~~v~v~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~ 1122 (1165)
T 2qf7_A         1044 VIVNQAVS-ATDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDV 1122 (1165)
T ss_dssp             EEEEEEEC-CCCTTSEEEEEEEETTEEEEEEEECGGGTCCSCCCSCBCCTTCTTEEECSSCEEEEEECCSSCCCC---CE
T ss_pred             eeEecccC-CCccCCceEEEEEECCEEEEEEecCcccccccccccccCCCCCCceeeCCCCeEEEEEEcCCcCEeCCCCE
Confidence            99999988 777788899999999999999999865322 2223455666677899999999999999999999999999


Q ss_pred             EEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         223 LIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       223 l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      |++|||||||++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus      1123 l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1123 LVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             EEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             EEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            9999999999999999999999999999999999 9999875

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=99.84  E-value=1.7e-22  Score=201.24  Aligned_cols=149  Identities=14%  Similarity=0.140  Sum_probs=81.9

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHh---hCCCCcc-
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKV---LGSLKDH-   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~v---L~g~~~i-   96 (288)
                      ..+||||||||||||||+||.|   |+++|+ |+      +||+|+++|++|+||+||+|||++|++++   |++ +++ 
T Consensus       351 ~~~G~~~~VTP~Sq~vg~~A~~---~v~~~~-~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~~~~l~~-~~~~  419 (539)
T 1rqb_A          351 KAAGFPPLVTPSSQIVGTQAVF---NVMMGE-YK------RMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGK-KPIT  419 (539)
T ss_dssp             HHTTCCCCCTTHHHHHHHHHHH---HHHHCT-TS------SCCHHHHHHHTTTTCCCSSCCCHHHHHHHHHHHCC-CCCC
T ss_pred             HHcCCCcccCchhhhHHHHHHH---HHhcCc-cc------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHHHHhCC-CCCC
Confidence            4689999999999999999977   556775 76      99999999999999999999999999999   988 666 


Q ss_pred             -------------cccc--------CCcccceeecccCCCCCCCcccccCCCC-CCce--eee-eecCCceEEEEEeecc
Q psy2807          97 -------------TLDR--------KPECDLMMEDEFGPVDRLPTRIFLNGPN-IGEE--FSC-EFKTGDTAYVTTLSIS  151 (288)
Q Consensus        97 -------------L~~~--------~~deDvL~~a~fg~~~~l~t~~F~~g~~-~gee--~~v-~~~~Gk~~~v~l~~~~  151 (288)
                                   ++++        .++||+|.|++||++.    ..|+.+.. ..+.  ++- .+. .+...++- ..+
T Consensus       420 ~rp~~~l~~~~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~  493 (539)
T 1rqb_A          420 QRPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVA----PVFFEHRAEGPHSVALTDAQLK-AEAEGDEK-SLA  493 (539)
T ss_dssp             SCGGGGCCCCHHHHHHHHTTSTTCCSSHHHHHHHHHCTTTH----HHHHHHGGGCCCCCSCCHHHHH-HHC---------
T ss_pred             CCccccCCcCHHHHHHHHHHHhhhcCCHHHHHHHHhCcHHH----HHHHHhhhcCcccccccccccc-hhhhhccc-ccc
Confidence                         1111        4789999999999998    88987653 2221  110 011 00000000 000


Q ss_pred             cccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccC
Q psy2807         152 ERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKA  190 (288)
Q Consensus       152 ~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a  190 (288)
                          ......+.+++||+.+.|.|...........+|++
T Consensus       494 ----~~~~~~~~v~v~g~~~~v~v~~~~~~~~~~~~~~~  528 (539)
T 1rqb_A          494 ----VAGPVTYNVNVGGTVREVTVQQATRASQPELAPED  528 (539)
T ss_dssp             ---------------------------------------
T ss_pred             ----ccCCeEEEEEECCEEEEEEEccCCCccccccCCCC
Confidence                01124688999999999999876544444445554

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=99.82  E-value=2.6e-22  Score=196.97  Aligned_cols=95  Identities=19%  Similarity=0.168  Sum_probs=82.7

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----   96 (288)
                      ..+||||||||||||||+||.|   |+|+|+||+      +||+|+++|++|+||+||+|||+++++++|++++++    
T Consensus       333 ~~~G~~~~VTP~Sq~~g~~A~~---~vl~~~~~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp  403 (464)
T 2nx9_A          333 EELGFLPLVTPTSQIVGTQAVI---NVVLGERYK------TITKETSGVLKGEYGKTPAPVNTELQARVLAGAEAITCRP  403 (464)
T ss_dssp             HHTTTCCSCTTHHHHHHHHHHH---HHHTSSTTS------SCCHHHHHHHTTTTCCCSSCCCHHHHHHHHTTCCCCCSCG
T ss_pred             HHcCCCcccCchhHhhHHHHHH---HHHcCCccc------cCCHHHHHHhCCCCCCCCCCCCHHHHHHHhCCCCCCCCCc
Confidence            4689999999999999999977   668899998      999999999999999999999999999999988776    


Q ss_pred             ----------cccc-----------CCc---ccceeecccCCCCCCCcccccCCCC
Q psy2807          97 ----------TLDR-----------KPE---CDLMMEDEFGPVDRLPTRIFLNGPN  128 (288)
Q Consensus        97 ----------L~~~-----------~~d---eDvL~~a~fg~~~~l~t~~F~~g~~  128 (288)
                                ++++           .++   ||+|.|++||++.    ..|+.+..
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~----~~~~~~~~  455 (464)
T 2nx9_A          404 ADLIAAEMPTLQDRVLQQAKEQHITLAENAIDDVLTIALFDQVG----WKFLANRH  455 (464)
T ss_dssp             GGSSCCCHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHH----HHHHHHC-
T ss_pred             cccCCcCHHHHHHHHHHHhcccccccccccHHHHHHHHcCcHHH----HHHHHhhc
Confidence                      1111           267   8999999999988    88886554

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.82  E-value=3.1e-20  Score=189.88  Aligned_cols=235  Identities=17%  Similarity=0.218  Sum_probs=145.9

Q ss_pred             eecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC-------CCCC
Q psy2807          15 VNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP-------YQGF   81 (288)
Q Consensus        15 ~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P-------p~gf   81 (288)
                      ||+|++...|+-|.    ..|..++|+++++. -+++...++..      .+....++++|++..+.+|       .++|
T Consensus       386 vr~d~~~~~g~~v~----~~yd~~iak~i~~g-~~r~~a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~  460 (681)
T 3n6r_A          386 VRNDTGVYEGGEIS----MYYDPMIAKLCTWA-PTRAAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAF  460 (681)
T ss_dssp             EEEEESCCTTCEEC----TTSCCEEEEEEEEE-SSHHHHHHHHHHHHHHCEECSSCCSHHHHHHHHHCHHHHHCCCCSSH
T ss_pred             EEEEccccCCCccC----CCCCCceeEEEEEc-CCHHHHHHHHHHHHhcCEEECccCCHHHHHHHhCCHhhccCCcccch
Confidence            78999999999663    36888889876665 67777766653      4667899999999988777       4555


Q ss_pred             CHhHHHHhhCCCCccccccCCcccc--e-------ee------ccc-C---CCCCCCcccccCCCCCCceeeeeec-CCc
Q psy2807          82 PKKLQEKVLGSLKDHTLDRKPECDL--M-------ME------DEF-G---PVDRLPTRIFLNGPNIGEEFSCEFK-TGD  141 (288)
Q Consensus        82 ~~~l~~~vL~g~~~iL~~~~~deDv--L-------~~------a~f-g---~~~~l~t~~F~~g~~~gee~~v~~~-~Gk  141 (288)
                      .+++....+....+.      +++.  +       ..      ..+ +   .+.......|-..+ .++++.+.+. .+.
T Consensus       461 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  533 (681)
T 3n6r_A          461 IAEEYPEGFEGVNLP------ETDLRRVAAAAAAMHRVAEIRRTRVSGRMDNHERRVGTEWVVTL-QGADFPVTIAADHD  533 (681)
T ss_dssp             HHHHCTTSCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHTTCTTCCTTCCCCCCSEEEEEC-SSCEEEEEEEECSS
T ss_pred             hhhccccccCCCCCC------hhHHHHHHHHHHHHHHHhhhcccccccCCCccccCCCcCEEEEE-CCEEEEEEEEEcCC
Confidence            554433333332221      1111  1       00      001 1   11101111110011 2333333331 111


Q ss_pred             eEEEEE-ee----c-ccccccCCceEEEEEeCCEEEEEEEeccchh---------hhh-----------hccc-cCCCCC
Q psy2807         142 TAYVTT-LS----I-SERLNDHGERTVFFLYNGQLRSVLIRDKNQA---------KKL-----------KLRS-KADSDT  194 (288)
Q Consensus       142 ~~~v~l-~~----~-~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~---------~~~-----------~~~~-~a~~~~  194 (288)
                      .+.+.+ ..    . . .+ ..+...+.+.+||+++.+.+......         ..+           ...+ ++....
T Consensus       534 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~dG~~~~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~  611 (681)
T 3n6r_A          534 GSTVSFDDGSSMRVTS-DW-TPGDQLANLMVDGAPLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDT  611 (681)
T ss_dssp             CEEEEETTSCEEEEEE-CC-CTTCSEEEEEETTEEEEEEEEEETTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCC
T ss_pred             eEEEEEeCCcEEEEEE-Ee-cCCCeEEEEEECCEEEEEEEEEeCCEEEEEECCeEEEEEecCchhhhhccccccccCCCC
Confidence            222222 00    0 0 11 12333467788998887655432100         000           0011 123445


Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      .+.|+|||||+|++|+|++||.|++||+|++|||||||++|+||.+|+|.++++++||.|.. ++|++|+
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            68899999999999999999999999999999999999999999999999999999999999 9999874

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.66  E-value=2.2e-16  Score=120.51  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=68.0

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      ++..|.||++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.+++ ++|+.|.. ++|+.|.+.+
T Consensus         4 ~~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~   76 (84)
T 2kcc_A            4 DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD   76 (84)
T ss_dssp             CTTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred             CCceEECCCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence            456899999999999999999999999999999999999999999999999999 99999999 9999997543

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.1e-15  Score=120.02  Aligned_cols=70  Identities=16%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      +...|.||++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|. +++++|+.|.. ++|++|.+
T Consensus        16 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           16 DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             CTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             CCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            456899999999999999999999999999999999999999999999999 99999999999 99999974

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.63  E-value=1.3e-15  Score=111.66  Aligned_cols=69  Identities=25%  Similarity=0.331  Sum_probs=66.2

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .|+||++|+|.+|++++||.|++||+|+.||+|||+.+|+||++|+|.++++++|+.|.. ++|+.|.+.
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   70 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS   70 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence            478999999999999999999999999999999999999999999999999999999999 999999764

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.62  E-value=1.2e-15  Score=114.59  Aligned_cols=69  Identities=22%  Similarity=0.239  Sum_probs=65.8

Q ss_pred             CCeeecCCcEEEEEE-------ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         195 AGEIGAPMPGNIIEV-------KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       195 ~~~i~apm~G~V~~v-------~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ...|+||++|+|.++       ++++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|+
T Consensus         4 ~~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A            4 GHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CeEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            357999999999997       99999999999999999999999999999999999999999999999 9999874

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.60  E-value=3.5e-15  Score=114.32  Aligned_cols=65  Identities=11%  Similarity=0.040  Sum_probs=62.0

Q ss_pred             CCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEecC
Q psy2807         201 PMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLNGV  265 (288)
Q Consensus       201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~~~  265 (288)
                      +.+|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+ .|.. ++|++|...
T Consensus        17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~   83 (87)
T 3crk_C           17 MTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK   83 (87)
T ss_dssp             CCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred             CCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence            4689999999999999999999999999999999999999999999999999 8999 999999853

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.59  E-value=7.5e-15  Score=109.07  Aligned_cols=72  Identities=26%  Similarity=0.353  Sum_probs=68.1

Q ss_pred             CCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         192 SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       192 ~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      +.+...|.||++|.|.+|++++||.|++||+|+.|++|||+.+|+||++|+|.++++++|+.|.. ++|+.|+
T Consensus         5 ~~~~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A            5 KAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             CCCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             cCCCeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            44567899999999999999999999999999999999999999999999999999999999999 9999874

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.59  E-value=2.8e-15  Score=112.43  Aligned_cols=65  Identities=22%  Similarity=0.238  Sum_probs=62.4

Q ss_pred             cCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         200 APMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ++++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+
T Consensus        12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           12 SIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             CCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            468999999999999999999999999999999999999999999999999999999 99999875

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.58  E-value=1.2e-14  Score=106.78  Aligned_cols=69  Identities=29%  Similarity=0.414  Sum_probs=66.1

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ...|.||++|+|.+|++++||.|++||+|+.++++||+.+|+||++|+|.++++++|+.|.. ++|+.|+
T Consensus         5 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A            5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CeEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            46799999999999999999999999999999999999999999999999999999999999 9999874

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.58  E-value=4.2e-15  Score=115.62  Aligned_cols=67  Identities=21%  Similarity=0.080  Sum_probs=63.2

Q ss_pred             CCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCC
Q psy2807         201 PMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRK  267 (288)
Q Consensus       201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~  267 (288)
                      ..+|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|.. ++|++|++..+
T Consensus        16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~~   83 (93)
T 1k8m_A           16 IREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEAL   83 (93)
T ss_dssp             SCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred             CCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence            36899999999999999999999999999999999999999999999999999999 99999986443

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=8.3e-15  Score=115.14  Aligned_cols=65  Identities=22%  Similarity=0.139  Sum_probs=62.0

Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCee-cc-ceeEEEecCC
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNF-MR-PLQLSLNGVR  266 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V-~~-~~L~~i~~~~  266 (288)
                      .+|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.| .. ++|++|.+..
T Consensus        20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~   86 (98)
T 2dnc_A           20 EEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG   86 (98)
T ss_dssp             SEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred             ccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence            57999999999999999999999999999999999999999999999999998 99 9999998643

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.55  E-value=2.4e-14  Score=112.37  Aligned_cols=78  Identities=31%  Similarity=0.329  Sum_probs=71.8

Q ss_pred             CCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCCCC
Q psy2807         193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKTDP  270 (288)
Q Consensus       193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~~~  270 (288)
                      .+...|.||++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+.+...+
T Consensus        12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~~~~   90 (99)
T 2ejm_A           12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDKR   90 (99)
T ss_dssp             SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCSCCC
T ss_pred             CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCcccc
Confidence            3456899999999999999999999999999999999999999999999999999999999999 99999986554443

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.55  E-value=5.9e-15  Score=110.00  Aligned_cols=64  Identities=17%  Similarity=0.122  Sum_probs=61.9

Q ss_pred             cCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         200 APMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ++++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|+
T Consensus        12 ~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A           12 GVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             SCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             CCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            478999999999999999999999999999999999999999999999999999999 9999885

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=115.94  Aligned_cols=63  Identities=11%  Similarity=0.073  Sum_probs=60.8

Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEec
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLNG  264 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~~  264 (288)
                      .+|+|++|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+ .|.. ++|++|..
T Consensus        20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~   84 (108)
T 2dne_A           20 QAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG   84 (108)
T ss_dssp             CEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence            579999999999999999999999999999999999999999999999999 8999 99999974

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.52  E-value=3.8e-15  Score=112.09  Aligned_cols=69  Identities=23%  Similarity=0.284  Sum_probs=65.0

Q ss_pred             eecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       198 i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      +.++++|+|.+|++++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+..
T Consensus        10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~~   79 (81)
T 1gjx_A           10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG   79 (81)
T ss_dssp             CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred             CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEecC
Confidence            45689999999999999999999999999999999999999999999999999999999 9999997643

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.52  E-value=2.9e-14  Score=117.54  Aligned_cols=65  Identities=12%  Similarity=0.074  Sum_probs=61.6

Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEecCC
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLNGVR  266 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~~~~  266 (288)
                      ..|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|.. ++|++|....
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~  106 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE  106 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence            469999999999999999999999999999999999999999999999998 8999 9999998643

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.51  E-value=3.2e-15  Score=116.37  Aligned_cols=71  Identities=24%  Similarity=0.354  Sum_probs=33.3

Q ss_pred             CCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      .....|+||++|+|.+|++++||.|++||+|+.||+|||+.+|+||++|+|.++++++|+.|.. ++|++|+
T Consensus        23 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           23 MTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             -CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             CCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            3456799999999999999999999999999999999999999999999999999999999999 9998874

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.51  E-value=3.9e-14  Score=106.15  Aligned_cols=63  Identities=24%  Similarity=0.215  Sum_probs=61.4

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      +|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+.
T Consensus        14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A           14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            899999999999999999999999999999999999999999999999999999 999999864

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.50  E-value=2.6e-15  Score=114.42  Aligned_cols=74  Identities=23%  Similarity=0.221  Sum_probs=68.3

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCCCC
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKTDP  270 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~~~  270 (288)
                      .|.+|..|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+.....+
T Consensus         4 ~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~~~~~   78 (85)
T 2k7v_A            4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPA   78 (85)
T ss_dssp             CCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCSSCCC
T ss_pred             EEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCCCC
Confidence            477788899999999999999999999999999999999999999999999999999999 99999997654433

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.49  E-value=5e-14  Score=151.96  Aligned_cols=68  Identities=22%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      ...|.|||+|+|++|+|++||.|++||+|++||||||+++|+||.+|+|.++++++||.|.. ++|++|
T Consensus      1167 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             CcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            35799999999999999999999999999999999999999999999999999999999999 999987

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.48  E-value=7.5e-14  Score=104.57  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=60.6

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      + +|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+..
T Consensus        13 ~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~   76 (79)
T 1iyu_A           13 G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence            6 8999999999999999999999999999999999999999999999999999 9999998654

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.43  E-value=3.6e-15  Score=112.32  Aligned_cols=64  Identities=19%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             CCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         201 PMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      ..+|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+
T Consensus        14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           14 VADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             CccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            46899999999999999999999999999999999999999999999999999999 99998864

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=99.21  E-value=8.2e-12  Score=103.81  Aligned_cols=69  Identities=16%  Similarity=0.147  Sum_probs=62.8

Q ss_pred             eecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEE---eeCCCCeec---c-c-eeEEEecCC
Q psy2807         198 IGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVR---SSNLDYNFM---R-P-LQLSLNGVR  266 (288)
Q Consensus       198 i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i---~v~~Gd~V~---~-~-~L~~i~~~~  266 (288)
                      +++|++|.|+.+.+ ++||.|++||+|++||||||+++|.||++|+|.++   .+..|+.|.   . + .|+.|.+.+
T Consensus        39 ~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~  116 (136)
T 1zko_A           39 HAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD  116 (136)
T ss_dssp             HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred             hhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence            55688899998888 99999999999999999999999999999999999   788999998   4 5 899998765

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=99.14  E-value=7.2e-11  Score=94.18  Aligned_cols=69  Identities=22%  Similarity=0.239  Sum_probs=63.1

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEecccee-----------------------------EEEEcCCCeEEEEEe
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTE-----------------------------TLIHASADGVHKVRS  247 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme-----------------------------~~I~Ap~~G~V~~i~  247 (288)
                      .|.|+++|+|.+|+|++||.|++||+|+.|++.+.+                             ..|+||++|+|..+.
T Consensus         3 ~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~   82 (116)
T 2k32_A            3 IIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL   82 (116)
T ss_dssp             EECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred             EEeCcCCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence            589999999999999999999999999999987554                             489999999999999


Q ss_pred             eCCCCeecc--ceeEEEecC
Q psy2807         248 SNLDYNFMR--PLQLSLNGV  265 (288)
Q Consensus       248 v~~Gd~V~~--~~L~~i~~~  265 (288)
                      +++|+.|..  ++|+.|.+.
T Consensus        83 ~~~G~~v~~g~~~l~~i~~~  102 (116)
T 2k32_A           83 VNIGDYVSASTTELVRVTNL  102 (116)
T ss_dssp             CCTTCEECTTTSCCEEEECS
T ss_pred             CCCCCEEcCCCcEEEEEECC
Confidence            999999988  789988754

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.13  E-value=4.8e-12  Score=123.08  Aligned_cols=62  Identities=19%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|.. ++|+.|+.
T Consensus        16 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~   78 (428)
T 3dva_I           16 EGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA   78 (428)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            499999999999999999999999999999999999999999999999999999 99999973

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.87  E-value=6e-10  Score=91.97  Aligned_cols=69  Identities=12%  Similarity=0.099  Sum_probs=58.6

Q ss_pred             eecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC---eecc----c-eeEEEecCC
Q psy2807         198 IGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY---NFMR----P-LQLSLNGVR  266 (288)
Q Consensus       198 i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd---~V~~----~-~L~~i~~~~  266 (288)
                      ...++.|.|+.+.+ ++||.|++||++++||||||+++|.||++|+|.+++.+.++   .|..    + -|+.|.+..
T Consensus        30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~  107 (131)
T 1hpc_A           30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS  107 (131)
T ss_dssp             HHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESS
T ss_pred             hhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECC
Confidence            34577888999988 99999999999999999999999999999999999976665   4542    2 689888654

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.76  E-value=4.3e-09  Score=86.50  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             eecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC---eecc----c-eeEEEecCC
Q psy2807         198 IGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY---NFMR----P-LQLSLNGVR  266 (288)
Q Consensus       198 i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd---~V~~----~-~L~~i~~~~  266 (288)
                      ...++.|.|+.+.+ ++|+.|++||++++||+|||.++|.||++|+|.+++...++   .|..    + -|+.|.+..
T Consensus        31 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~  108 (128)
T 3a7l_A           31 HAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD  108 (128)
T ss_dssp             HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred             HHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECC
Confidence            34567788888877 99999999999999999999999999999999999875544   4552    2 688888654

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.73  E-value=3.4e-09  Score=87.12  Aligned_cols=68  Identities=19%  Similarity=0.177  Sum_probs=56.3

Q ss_pred             ecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeC---CCCeecc----c-eeEEEecCC
Q psy2807         199 GAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN---LDYNFMR----P-LQLSLNGVR  266 (288)
Q Consensus       199 ~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~---~Gd~V~~----~-~L~~i~~~~  266 (288)
                      .+++.|.|+.+.+ ++|+.|++||++++||||||.++|.||++|+|.+++..   ..+.|..    + -|+.|.+..
T Consensus        31 a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~  107 (128)
T 1onl_A           31 AQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD  107 (128)
T ss_dssp             HHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred             HhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECC
Confidence            3466788888877 99999999999999999999999999999999999865   4445522    3 688888654

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=98.48  E-value=2.2e-07  Score=86.04  Aligned_cols=69  Identities=22%  Similarity=0.284  Sum_probs=59.9

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccce-------------------------------------------
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT-------------------------------------------  231 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKm-------------------------------------------  231 (288)
                      ...|.++.+|+|.+++|++||.|++||+|+.|+.-..                                           
T Consensus        31 ~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~  110 (341)
T 3fpp_A           31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQA  110 (341)
T ss_dssp             EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSS
T ss_pred             EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4578999999999999999999999999999986210                                           


Q ss_pred             ------------------------------------------eEEEEcCCCeEEEEEeeCCCCeecc-ce---eEEEe
Q psy2807         232 ------------------------------------------ETLIHASADGVHKVRSSNLDYNFMR-PL---QLSLN  263 (288)
Q Consensus       232 ------------------------------------------e~~I~Ap~~G~V~~i~v~~Gd~V~~-~~---L~~i~  263 (288)
                                                                .+.|+||++|+|..+++.+|+.|.+ ++   |+.|.
T Consensus       111 ~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~  188 (341)
T 3fpp_A          111 VSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA  188 (341)
T ss_dssp             STTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEe
Confidence                                                      1569999999999999999999988 65   77775

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.47  E-value=3.4e-07  Score=87.94  Aligned_cols=69  Identities=22%  Similarity=0.268  Sum_probs=61.4

Q ss_pred             CCeeecCCcEEEEEEec-CCCCEEecCCEEEEEecc--------------------------------------------
Q psy2807         195 AGEIGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVM--------------------------------------------  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEam--------------------------------------------  229 (288)
                      ...|.|+.+|.|.+++| ++||.|++||+|+.|++-                                            
T Consensus       121 ~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~  200 (413)
T 3ne5_B          121 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA  200 (413)
T ss_dssp             EEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             eEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            35789999999999999 999999999999999941                                            


Q ss_pred             ----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         230 ----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       230 ----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                          .-...|+||++|+|.++.+++|+.|.+ ++|++|.
T Consensus       201 ~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~  239 (413)
T 3ne5_B          201 TQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ  239 (413)
T ss_dssp             HTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred             hccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence                113689999999999999999999999 9988885

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.45  E-value=3.9e-07  Score=84.93  Aligned_cols=71  Identities=14%  Similarity=0.250  Sum_probs=61.8

Q ss_pred             CCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccce-----------------------------------------
Q psy2807         193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT-----------------------------------------  231 (288)
Q Consensus       193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKm-----------------------------------------  231 (288)
                      .....|.|+.+|+|.+++|++||.|++||+|+.|+.-..                                         
T Consensus        55 ~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a  134 (359)
T 3lnn_A           55 AKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQA  134 (359)
T ss_dssp             SSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHH
T ss_pred             CcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            345689999999999999999999999999999986311                                         


Q ss_pred             -----------------------------------eEEEEcCCCeEEEEEeeCCCCeecc--ceeEEEe
Q psy2807         232 -----------------------------------ETLIHASADGVHKVRSSNLDYNFMR--PLQLSLN  263 (288)
Q Consensus       232 -----------------------------------e~~I~Ap~~G~V~~i~v~~Gd~V~~--~~L~~i~  263 (288)
                                                         .+.|+||++|+|..+.+.+|+.|..  ++|++|.
T Consensus       135 ~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~  203 (359)
T 3lnn_A          135 QSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA  203 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence                                               2579999999999999999999987  7788775

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.43  E-value=9.7e-08  Score=86.03  Aligned_cols=69  Identities=12%  Similarity=0.104  Sum_probs=60.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc--------------------------------------------
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK--------------------------------------------  230 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK--------------------------------------------  230 (288)
                      ...|.|+.+|+|.+++|++||.|++||+|+.|+.-.                                            
T Consensus        22 ~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~  101 (277)
T 2f1m_A           22 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYD  101 (277)
T ss_dssp             EEEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHH
T ss_pred             EEEEEccccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            357899999999999999999999999999998521                                            


Q ss_pred             ---------------------------eeEEEEcCCCeEEEEEeeCCCCeecc-c--eeEEEe
Q psy2807         231 ---------------------------TETLIHASADGVHKVRSSNLDYNFMR-P--LQLSLN  263 (288)
Q Consensus       231 ---------------------------me~~I~Ap~~G~V~~i~v~~Gd~V~~-~--~L~~i~  263 (288)
                                                 -.+.|+||++|+|..+.+++|+.|.+ +  +|++|.
T Consensus       102 ~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~  164 (277)
T 2f1m_A          102 QALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ  164 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence                                       02489999999999999999999998 5  788875

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=98.32  E-value=7.1e-07  Score=72.96  Aligned_cols=65  Identities=12%  Similarity=0.188  Sum_probs=51.8

Q ss_pred             CcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe---eccc-----eeEEEecCC
Q psy2807         202 MPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN---FMRP-----LQLSLNGVR  266 (288)
Q Consensus       202 m~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~---V~~~-----~L~~i~~~~  266 (288)
                      +-|.|+-+.+ ++|+.|++|+++++||+||+..+|.||++|+|.+++....+.   +..+     =|+.|.+..
T Consensus        30 ~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~  103 (125)
T 3klr_A           30 ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSN  103 (125)
T ss_dssp             HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESC
T ss_pred             hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECC
Confidence            3466887777 799999999999999999999999999999999998765543   3221     277777543

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=98.23  E-value=7e-07  Score=84.21  Aligned_cols=70  Identities=14%  Similarity=0.086  Sum_probs=60.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccce-------------------------------------------
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT-------------------------------------------  231 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKm-------------------------------------------  231 (288)
                      ...|.|+.+|+|.+++|++||.|++||+|+.|+.-..                                           
T Consensus        43 ~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~  122 (369)
T 1vf7_A           43 IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYL  122 (369)
T ss_dssp             EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             EEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            4579999999999999999999999999999985210                                           


Q ss_pred             --------------eEEEEcCCCeEEEEEeeCCCCeecc---ceeEEEec
Q psy2807         232 --------------ETLIHASADGVHKVRSSNLDYNFMR---PLQLSLNG  264 (288)
Q Consensus       232 --------------e~~I~Ap~~G~V~~i~v~~Gd~V~~---~~L~~i~~  264 (288)
                                    .+.|+||++|+|..+.+++|+.|.+   ++|++|..
T Consensus       123 ~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~  172 (369)
T 1vf7_A          123 QSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ  172 (369)
T ss_dssp             HHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred             HHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence                          2589999999999999999999987   57888753

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=98.11  E-value=2.9e-06  Score=70.38  Aligned_cols=48  Identities=21%  Similarity=0.203  Sum_probs=42.4

Q ss_pred             CcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeC
Q psy2807         202 MPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN  249 (288)
Q Consensus       202 m~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~  249 (288)
                      .-|.|+-+.+ ++|+.|++|+.+++||+||+..+|.||++|+|.+++-.
T Consensus        47 ~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~   95 (137)
T 3tzu_A           47 ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA   95 (137)
T ss_dssp             HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred             hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence            3466777766 89999999999999999999999999999999998744

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=98.11  E-value=3.8e-06  Score=70.07  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=43.6

Q ss_pred             EEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe
Q psy2807         204 GNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN  253 (288)
Q Consensus       204 G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~  253 (288)
                      |.|+-+.+ ++|+.|++|+++++||+||+..+|.||++|+|.+++-...+.
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~  104 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAES  104 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTC
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhC
Confidence            55766655 899999999999999999999999999999999998665544

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.97  E-value=3.3e-07  Score=85.58  Aligned_cols=35  Identities=37%  Similarity=0.602  Sum_probs=32.4

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ....|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus        31 ~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~   65 (369)
T 4dk0_A           31 NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS   65 (369)
T ss_dssp             SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred             eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence            45679999999999999999999999999999985

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=97.73  E-value=2.7e-05  Score=66.21  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=58.9

Q ss_pred             CCCCeeecCCcEEEEEEecCCCCEEec----CCEEEEEeccceeEEEEcCCCeEEEEE----------------------
Q psy2807         193 DTAGEIGAPMPGNIIEVKAKVGQQVKK----NDVLIVMSVMKTETLIHASADGVHKVR----------------------  246 (288)
Q Consensus       193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~----G~~l~~lEamKme~~I~Ap~~G~V~~i----------------------  246 (288)
                      .....|.||+.|+|+.+ -+..|.+-+    |+.+++..+   +..++||++|+|..+                      
T Consensus        10 ~~~~~i~aP~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIG   85 (162)
T 1ax3_A           10 IGEEVFVSPITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFG   85 (162)
T ss_dssp             TCCSSCCCCCSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECS
T ss_pred             CCCCEEEecCceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEEC
Confidence            34557999999999998 677888777    899998876   678999999999988                      


Q ss_pred             -------------eeCCCCeecc-ceeEEEe
Q psy2807         247 -------------SSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       247 -------------~v~~Gd~V~~-~~L~~i~  263 (288)
                                   ++++||.|.+ ++|++++
T Consensus        86 idTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           86 IDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             SSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred             ccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence                         8999999999 9999997

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.72  E-value=4.5e-05  Score=64.35  Aligned_cols=46  Identities=17%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             EEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeC
Q psy2807         204 GNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN  249 (288)
Q Consensus       204 G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~  249 (288)
                      |.|+-+.+ ++|+.|++|+.+++||++|...+|.||++|+|.+++-.
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~  105 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSD  105 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTH
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence            45666644 79999999999999999999999999999999988743

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=97.68  E-value=0.00017  Score=67.90  Aligned_cols=73  Identities=16%  Similarity=0.125  Sum_probs=57.8

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec-CCCCC
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG-VRKTD  269 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~-~~~~~  269 (288)
                      .-++||..| +++..++.||.|++||+|+.++.|    +++.+|+||.+|+|...  .....|.. +.|+.|.. .+-..
T Consensus       268 ~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~~~~~  344 (354)
T 3cdx_A          268 AYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDYNDTW  344 (354)
T ss_dssp             GEEECSSCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEECCC--
T ss_pred             EEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeecCCcC
Confidence            357899999 777889999999999999999986    78899999999999765  46777888 88887763 33444


Q ss_pred             CC
Q psy2807         270 PL  271 (288)
Q Consensus       270 ~~  271 (288)
                      |.
T Consensus       345 ~~  346 (354)
T 3cdx_A          345 PQ  346 (354)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=97.68  E-value=4.1e-05  Score=65.08  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=57.4

Q ss_pred             CeeecCCcEEEEEEecCCCCEEec----CCEEEEEeccceeEEEEcCCCeEEEEE-------------------------
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKK----NDVLIVMSVMKTETLIHASADGVHKVR-------------------------  246 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~----G~~l~~lEamKme~~I~Ap~~G~V~~i-------------------------  246 (288)
                      ..|.||++|+|+.+. +..|.+-+    |+.+++..+   +..++||++|+|..+                         
T Consensus        13 ~~i~aP~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidT   88 (161)
T 1f3z_A           13 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT   88 (161)
T ss_dssp             EEEECSSCEEEEEGG-GSSSHHHHTTSSCEEEEEEEC---SSEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSG
T ss_pred             cEEEecCCeEEEEeE-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccc
Confidence            469999999999987 78888777    899988876   478999999999999                         


Q ss_pred             ----------eeCCCCeecc-ceeEEEe
Q psy2807         247 ----------SSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       247 ----------~v~~Gd~V~~-~~L~~i~  263 (288)
                                ++++||.|.. ++|++++
T Consensus        89 V~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           89 VELKGEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             GGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             hhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence                      8999999999 9999997

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=97.64  E-value=4.4e-05  Score=64.41  Aligned_cols=64  Identities=20%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             CeeecCCcEEEEEEecCCCCEEec----CCEEEEEeccceeEEEEcCCCeEEEE--------------------------
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKK----NDVLIVMSVMKTETLIHASADGVHKV--------------------------  245 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~----G~~l~~lEamKme~~I~Ap~~G~V~~--------------------------  245 (288)
                      ..|.||++|+|+.+. +..|.|-+    |+.+++..+   ++.++||++|+|..                          
T Consensus         8 ~~i~aP~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidT   83 (154)
T 2gpr_A            8 LKVLAPCDGTIITLD-EVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDT   83 (154)
T ss_dssp             EEEECSSSEEEECGG-GSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSG
T ss_pred             CEEEecCCeEEEEee-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcch
Confidence            579999999999986 88888877    899998887   47999999999998                          


Q ss_pred             ---------EeeCCCCeecc-ceeEEEe
Q psy2807         246 ---------RSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       246 ---------i~v~~Gd~V~~-~~L~~i~  263 (288)
                               +++++||.|.+ ++|++++
T Consensus        84 v~l~G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           84 VSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             GGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             hhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence                     48999999999 9999987

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=97.44  E-value=0.00058  Score=63.81  Aligned_cols=69  Identities=14%  Similarity=0.102  Sum_probs=55.3

Q ss_pred             CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      ...-|+||..| ++.-.++.||.|++||+|+.|..+    ..+.+|+||.+|+|.....  .-.|.. +.|+.|...
T Consensus       256 ~~~~v~A~~~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~V~~G~~l~~Ia~~  329 (331)
T 3na6_A          256 GDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGMIKSGDCAAVIGVV  329 (331)
T ss_dssp             SCCCEECSSCE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSEECTTCEEEEEECB
T ss_pred             CcEEEeCCCCe-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCccCCCCEEEEEecc
Confidence            34568999999 555689999999999999999986    4678999999999976543  456666 777777543

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=97.06  E-value=0.0016  Score=61.79  Aligned_cols=65  Identities=22%  Similarity=0.264  Sum_probs=51.3

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEec------cceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV------MKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa------mKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      .-|+||.+| ++...++.||.|++||+|+.|..      -.-..+|+||.+|+|....  ..-.|.. +.|+.|.
T Consensus       291 ~~v~A~~~G-l~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l~~i~  362 (368)
T 3fmc_A          291 RKFHAPKAG-MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTELYKVM  362 (368)
T ss_dssp             EEEECSSCE-EEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEEEEEE
T ss_pred             EEEecCCCE-EEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEe
Confidence            358999999 55589999999999999999987      3467899999999996554  3355666 6666553

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=97.03  E-value=0.00074  Score=49.62  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=30.2

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..|+||..|+|.++++++|+.|..|++|+.|+
T Consensus        49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            57999999999999999999999999999885

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=96.95  E-value=0.00094  Score=48.70  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=30.9

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|+||.+|+|.++++++||.|..|++|+.|+
T Consensus        44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A           44 TVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             EEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            357999999999999999999999999999986

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.92  E-value=0.00032  Score=54.26  Aligned_cols=45  Identities=7%  Similarity=-0.031  Sum_probs=41.1

Q ss_pred             CCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         220 NDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       220 G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      |..++.+++|+....|.||.+|+|.++++++||.|.+ ++|++|+.
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~   50 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV   50 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence            4556788999999999999999999999999999999 99999984

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.90  E-value=0.0011  Score=47.49  Aligned_cols=34  Identities=38%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|+||.+|+|.++++++|+.|++|++|+.|..
T Consensus        36 ~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A           36 EIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             EEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             EEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            3579999999999999999999999999999864

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=96.83  E-value=0.00085  Score=49.23  Aligned_cols=34  Identities=32%  Similarity=0.637  Sum_probs=31.9

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|+||.+|+|.++++++||.|..|++|+.|+.
T Consensus        43 ~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   76 (80)
T 1qjo_A           43 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             eEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence            4689999999999999999999999999999874

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=96.77  E-value=0.0016  Score=47.69  Aligned_cols=34  Identities=26%  Similarity=0.501  Sum_probs=31.5

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||.+|+|.++++++|+.|..|++|+.|+.
T Consensus        41 ~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~   74 (79)
T 1iyu_A           41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            3579999999999999999999999999999874

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=96.69  E-value=0.0021  Score=47.14  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||.+|+|.++++++||.|..|++|+.|+.
T Consensus        44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           44 VMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             eEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            3679999999999999999999999999999864

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.62  E-value=0.0025  Score=45.54  Aligned_cols=32  Identities=28%  Similarity=0.437  Sum_probs=30.1

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..|+||..|+|.++++++|+.|..|++|+.|+
T Consensus        43 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           43 NEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             EEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            57999999999999999999999999999875

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=96.54  E-value=0.002  Score=46.65  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|+||..|+|.++++++|+.|..|++|+.||
T Consensus        45 ~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           45 ETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             EEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             eEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            357999999999999999999999999999885

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=96.30  E-value=0.0044  Score=47.28  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=31.6

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++|+.|..|++|+.|+.
T Consensus        47 ~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~   80 (93)
T 1k8m_A           47 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (93)
T ss_dssp             EEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             EEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence            3679999999999999999999999999999874

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=96.29  E-value=0.0018  Score=48.39  Aligned_cols=35  Identities=31%  Similarity=0.600  Sum_probs=32.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|.||..|+|.++++++|+.|..|++|+.|+..
T Consensus        39 ~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A           39 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             EEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred             EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            45799999999999999999999999999999853

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=96.26  E-value=0.0051  Score=46.06  Aligned_cols=34  Identities=12%  Similarity=0.123  Sum_probs=31.5

Q ss_pred             CCeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++|+ .|..||+|+.|+.
T Consensus        48 ~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~   82 (87)
T 3crk_C           48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (87)
T ss_dssp             EEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred             cceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence            467999999999999999999 8999999999874

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=96.08  E-value=0.018  Score=53.34  Aligned_cols=64  Identities=17%  Similarity=0.139  Sum_probs=49.1

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEec----cceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV----MKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa----mKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      -+.||..|.+. ..++.|+.|++||+|+.+-.    .+...+|+||.+|+|.-..  ..-.|.. +.|+.|.
T Consensus       259 ~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia  327 (332)
T 2qj8_A          259 QLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILA  327 (332)
T ss_dssp             EEECSSSEEEE-ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEE
T ss_pred             EEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEe
Confidence            47899999665 77999999999999999965    5677899999999997664  3344444 5555543

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=95.90  E-value=0.013  Score=63.05  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=63.5

Q ss_pred             eeeeeecCCceEEEEEeeccc--------ccccCCceEEEEEeCCEEEEEEEeccchhhhhhc--cccCCCCCCCeeecC
Q psy2807         132 EFSCEFKTGDTAYVTTLSISE--------RLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKL--RSKADSDTAGEIGAP  201 (288)
Q Consensus       132 e~~v~~~~Gk~~~v~l~~~~~--------~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~--~~~a~~~~~~~i~ap  201 (288)
                      ++.+++ +|+.+.|++...+.        ..+......+.-.+.|...++.|..+.....-..  .-.+ ......|.||
T Consensus      1043 ~~~~e~-nG~~~~v~v~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iea-mK~~~~i~ap 1120 (1150)
T 3hbl_A         1043 TIYYAM-NGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEA-MKMETTIQAP 1120 (1150)
T ss_dssp             EEEEEE-TTEEEEEEEECCCSSSCCCCCCBCCTTCSSEEECSSSEEEEEECCCTTCEECTTCEEEEEES-SSCEEEEECS
T ss_pred             EEEEEE-CCeEEEEecccccccccccccccCCCCCCceeecCceEEEEEEEeCCCCEECCCCEEEEEEe-ccceeEEecC
Confidence            578888 59999998864320        1111233456667788888877766543211100  0011 1234679999


Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ..|+|.+++|++||.|..||+|++|+.
T Consensus      1121 ~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1121 FDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp             SSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred             CCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            999999999999999999999999973

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=95.65  E-value=0.0046  Score=46.14  Aligned_cols=31  Identities=3%  Similarity=-0.046  Sum_probs=29.4

Q ss_pred             EEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+||.+|+|.++++++||.|.+ ++|+.|+.
T Consensus         7 ~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~   38 (84)
T 2kcc_A            7 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV   38 (84)
T ss_dssp             EECCSSSCCEEEESSCTTEEECTTCEEEEEEC
T ss_pred             eEECCCCEEEEEEECCCCCEECCCCEEEEEEe
Confidence            59999999999999999999999 99999984

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.65  E-value=0.0092  Score=45.99  Aligned_cols=35  Identities=9%  Similarity=0.132  Sum_probs=32.1

Q ss_pred             CCeeecCCcEEEEEEecCCCCEE-ecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQV-KKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V-~~G~~l~~lEam  229 (288)
                      ...|.||..|+|.++++++|+.| ..|++|+.|+..
T Consensus        50 ~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~   85 (98)
T 2dnc_A           50 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE   85 (98)
T ss_dssp             EEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred             eeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence            46799999999999999999998 999999999853

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=95.54  E-value=0.0022  Score=48.98  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=0.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|+||..|+|.++.+++|+.|..|++|+.||
T Consensus        62 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           62 QNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             ---------------------------------
T ss_pred             cEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            457999999999999999999999999999875

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=95.52  E-value=0.012  Score=46.16  Aligned_cols=34  Identities=6%  Similarity=0.028  Sum_probs=31.5

Q ss_pred             CCeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++|+ .|..|++|++|+.
T Consensus        50 ~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~   84 (108)
T 2dne_A           50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVG   84 (108)
T ss_dssp             EEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred             eeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence            467999999999999999999 8999999999985

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=95.44  E-value=0.0027  Score=46.70  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=31.2

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++||.|..|++|+.|+.
T Consensus        45 ~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           45 VLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            4679999999999999999999999999998763

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=95.44  E-value=0.015  Score=45.49  Aligned_cols=33  Identities=9%  Similarity=0.065  Sum_probs=30.8

Q ss_pred             EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      ..|.|+.+|+|.++++++||.|.+ ++|+.|+..
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            578999999999999999999999 999999864

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=95.33  E-value=0.018  Score=46.83  Aligned_cols=34  Identities=12%  Similarity=0.123  Sum_probs=31.6

Q ss_pred             CCeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++|| .|..||+|++|+.
T Consensus        70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~  104 (128)
T 1y8o_B           70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE  104 (128)
T ss_dssp             EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred             eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence            468999999999999999998 8999999999985

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=95.22  E-value=0.022  Score=48.15  Aligned_cols=33  Identities=33%  Similarity=0.514  Sum_probs=30.1

Q ss_pred             CeeecCCcEEEEEE-----------------------------------ecCCCCEEecCCEEEEEec
Q psy2807         196 GEIGAPMPGNIIEV-----------------------------------KAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       196 ~~i~apm~G~V~~v-----------------------------------~V~~Gd~V~~G~~l~~lEa  228 (288)
                      +.++||..|+|..+                                   +|++||+|++||+|+.+.-
T Consensus        50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~  117 (161)
T 1f3z_A           50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence            68999999999988                                   8999999999999998873

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=95.18  E-value=0.0031  Score=46.30  Aligned_cols=34  Identities=26%  Similarity=0.533  Sum_probs=31.3

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||.+|+|.++++++|+.|..|++|+.|+.
T Consensus        44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (81)
T 1gjx_A           44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             EEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence            4679999999999999999999999999999864

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=95.17  E-value=0.013  Score=44.88  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|+||+.|+|.++++++|+.|..|++|+.|...
T Consensus        51 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~   85 (99)
T 2ejm_A           51 EHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE   85 (99)
T ss_dssp             EEEEECSSCEEEEEESCCTTEEECTTCBCEEECCC
T ss_pred             eEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECC
Confidence            35899999999999999999999999999998753

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=94.90  E-value=0.026  Score=47.29  Aligned_cols=20  Identities=20%  Similarity=0.287  Sum_probs=18.1

Q ss_pred             EecCCCCEEecCCEEEEEec
Q psy2807         209 VKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ++|++||+|++||+|+.+.-
T Consensus        93 ~~V~~Gd~V~~G~~L~~~d~  112 (154)
T 2gpr_A           93 SFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             ECCCTTCEECTTCEEEEECH
T ss_pred             EEEcCCCEEcCCCEEEEECH
Confidence            58999999999999998873

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=94.87  E-value=0.053  Score=45.94  Aligned_cols=55  Identities=16%  Similarity=0.136  Sum_probs=47.8

Q ss_pred             eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEE-EEcCCCeEEEEEeeCCC
Q psy2807         197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETL-IHASADGVHKVRSSNLD  251 (288)
Q Consensus       197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~-I~Ap~~G~V~~i~v~~G  251 (288)
                      -..=|..|..+-+.+.+|+.|.+|+.|+.+.+-|-|.. ++||.+|+|.-+.--++
T Consensus       102 L~lvpaeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~  157 (169)
T 3d4r_A          102 LISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS  157 (169)
T ss_dssp             CEEEEECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred             EEEEEeCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence            34557889999999999999999999999999999975 99999999987765544

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=94.66  E-value=0.068  Score=54.45  Aligned_cols=32  Identities=19%  Similarity=0.381  Sum_probs=30.3

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..|.||..|+|.++++++||.|..||+|++||
T Consensus       650 ~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          650 NILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             EEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             eEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            46999999999999999999999999999986

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=94.64  E-value=0.022  Score=48.18  Aligned_cols=18  Identities=17%  Similarity=0.272  Sum_probs=17.1

Q ss_pred             ecCCCCEEecCCEEEEEe
Q psy2807         210 KAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       210 ~V~~Gd~V~~G~~l~~lE  227 (288)
                      +|++||+|++||+|+.+.
T Consensus        99 ~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           99 FVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             SCCCCSEECSEEEEEEEC
T ss_pred             EEeCCCEEcCCCEEEEEC
Confidence            999999999999999887

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=94.16  E-value=0.043  Score=59.24  Aligned_cols=95  Identities=19%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             eeeeeecCCceEEEEEeeccccc---------ccCCceEEEEEeCCEEEEEEEeccchhhhhhc-cccCCCCCCCeeecC
Q psy2807         132 EFSCEFKTGDTAYVTTLSISERL---------NDHGERTVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAP  201 (288)
Q Consensus       132 e~~v~~~~Gk~~~v~l~~~~~~~---------~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~-~~~a~~~~~~~i~ap  201 (288)
                      ++.+++ +|+.+.|++...+...         +......+.-.+.|...++.+..+.....-.. ..-........|.||
T Consensus      1060 ~~~~ev-nG~~~~v~v~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap 1138 (1165)
T 2qf7_A         1060 TVFFEL-NGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAE 1138 (1165)
T ss_dssp             EEEEEE-TTEEEEEEEECGGGTCCSCCCSCBCCTTCTTEEECSSCEEEEEECCSSCCCC---CEEEEEEC---CEEEECC
T ss_pred             EEEEEE-CCEEEEEEecCcccccccccccccCCCCCCceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcC
Confidence            588888 5999999986542000         01122356666677777776655432111000 000011234689999


Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..|+|.++.|++||.|..||+|++|+
T Consensus      1139 ~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1139 KDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             SSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEec
Confidence            99999999999999999999999886

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=93.99  E-value=0.071  Score=47.30  Aligned_cols=46  Identities=7%  Similarity=-0.005  Sum_probs=37.5

Q ss_pred             cCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         219 KNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       219 ~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .=..-..+++- -...|.|+.+|+|.++++++||.|.+ ++|++|++.
T Consensus        10 ~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~   56 (277)
T 2f1m_A           10 TTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA   56 (277)
T ss_dssp             CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred             EEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence            33444566654 35689999999999999999999999 999999853

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=93.82  E-value=0.048  Score=49.82  Aligned_cols=56  Identities=11%  Similarity=0.043  Sum_probs=40.5

Q ss_pred             EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      ..|+.|+.-..=..-..+++. -+..|.++.+|+|.++++++||.|.+ ++|++|++.
T Consensus         9 ~~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A            9 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             ----CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred             EEEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence            344555544333444556655 36789999999999999999999999 999999853

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=93.25  E-value=0.035  Score=57.03  Aligned_cols=95  Identities=9%  Similarity=0.117  Sum_probs=58.3

Q ss_pred             eeeeeecCCceEEEEEeecccc--------cccCCceEEEEEeCCEEEEEEEeccchhhhhhc-cccCCCCCCCeeecCC
Q psy2807         132 EFSCEFKTGDTAYVTTLSISER--------LNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAPM  202 (288)
Q Consensus       132 e~~v~~~~Gk~~~v~l~~~~~~--------~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~-~~~a~~~~~~~i~apm  202 (288)
                      ++.+++ +|+.+.|++...+..        .+......+...+.|...++.+..+.....-.. ..-........|.||.
T Consensus       615 ~~~vev-nG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~  693 (718)
T 3bg3_A          615 QVFFEL-NGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPM  693 (718)
T ss_dssp             EEEEES-SSSEEEEEEECGGGTCC-----CCCCCSSSCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCC
T ss_pred             EEEEEE-CCEEEEEEEeccCccccccccccCCCCCCceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCC
Confidence            577787 488888887553200        011122345556667666666654432111000 0000112235799999


Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      .|+|.++.|++||.|..||+|++||
T Consensus       694 ~G~V~~i~v~~G~~V~~G~~L~~i~  718 (718)
T 3bg3_A          694 EGTVRKVHVTKDMTLEGDDLILEIE  718 (718)
T ss_dssp             CBCBCCCCCCSEEEECSSCEEECBC
T ss_pred             CeEEEEEecCCCCEeCCCCEEEEeC
Confidence            9999999999999999999999874

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=92.14  E-value=0.19  Score=43.31  Aligned_cols=19  Identities=5%  Similarity=0.052  Sum_probs=16.9

Q ss_pred             EEeeCCCCeecc-ceeEEEe
Q psy2807         245 VRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       245 ~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      +.++++||.|.+ ++|++++
T Consensus       119 ~~~V~~Gd~Vk~Gd~L~~fD  138 (183)
T 3our_B          119 TRIAEEGQTVKAGDTVIEFD  138 (183)
T ss_dssp             EECSCTTCEECTTCEEEEEC
T ss_pred             eEEEeCcCEEcCCCEEEEEC
Confidence            568889999999 9999987

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=92.03  E-value=0.2  Score=43.14  Aligned_cols=27  Identities=30%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      +.|.=.+++|++||+|++||+|+...-
T Consensus       113 L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~  139 (183)
T 3our_B          113 LKGEGFTRIAEEGQTVKAGDTVIEFDL  139 (183)
T ss_dssp             GTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             cCCccceEEEeCcCEEcCCCEEEEECH
Confidence            344444568999999999999998863

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=91.88  E-value=0.11  Score=47.77  Aligned_cols=56  Identities=5%  Similarity=-0.003  Sum_probs=42.7

Q ss_pred             ecCCCCEEecCCEEEEEecc-ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         210 KAKVGQQVKKNDVLIVMSVM-KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       210 ~V~~Gd~V~~G~~l~~lEam-Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .|+.|+.-..=..-..+++. .-+..|.|+.+|+|.++++++||.|.+ ++|+.|++.
T Consensus        34 ~v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~   91 (359)
T 3lnn_A           34 PATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA   91 (359)
T ss_dssp             ECEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred             EeeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            34444433334455566664 456789999999999999999999999 999999864

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=91.39  E-value=0.27  Score=42.61  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEE
Q psy2807         209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV  245 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~  245 (288)
                      ++|++|+.|++||.|+.-.      +|.|.++|+|.+
T Consensus        23 L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d   53 (193)
T 2xha_A           23 LHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   53 (193)
T ss_dssp             ESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             EEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence            6899999999999999765      788888888743

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=90.22  E-value=0.16  Score=47.29  Aligned_cols=56  Identities=5%  Similarity=0.001  Sum_probs=38.4

Q ss_pred             EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      ..|+.|+.-..=..-..+++. -+..|.|+.+|+|.++++++||.|.+ ++|++|++.
T Consensus        21 ~~v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~   77 (369)
T 1vf7_A           21 VTLEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA   77 (369)
T ss_dssp             --------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred             EEEEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            345555544443445566654 35689999999999999999999999 999999853

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=89.15  E-value=0.4  Score=45.46  Aligned_cols=56  Identities=13%  Similarity=0.038  Sum_probs=41.6

Q ss_pred             EecCCCCEEecCCEEEEEecc-ceeEEEEcCCCeEEEEEee-CCCCeecc-ceeEEEec
Q psy2807         209 VKAKVGQQVKKNDVLIVMSVM-KTETLIHASADGVHKVRSS-NLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEam-Kme~~I~Ap~~G~V~~i~v-~~Gd~V~~-~~L~~i~~  264 (288)
                      ..|+.|+.-..=.....+++. .-+..|.|+.+|+|.++++ ++||.|.+ ++|++|+.
T Consensus        97 ~~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~  155 (413)
T 3ne5_B           97 ATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI  155 (413)
T ss_dssp             EECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEEC
T ss_pred             EEEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcC
Confidence            344444444444455555542 3457899999999999998 99999999 99999984

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=88.62  E-value=0.37  Score=52.36  Aligned_cols=31  Identities=26%  Similarity=0.458  Sum_probs=29.5

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      ..|.||..|+|.+++|++||.|..||+|++|
T Consensus      1205 ~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1205 MVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             EEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             eeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            4699999999999999999999999999987

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=87.92  E-value=0.7  Score=43.50  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=26.4

Q ss_pred             EEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEE
Q psy2807         208 EVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV  245 (288)
Q Consensus       208 ~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~  245 (288)
                      .++|+.||.|++||.|+.=.      +|.|..+|+|.+
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~   93 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   93 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence            37899999999999999866      788888887743

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=87.41  E-value=0.72  Score=39.61  Aligned_cols=46  Identities=11%  Similarity=0.099  Sum_probs=39.9

Q ss_pred             EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807         209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR  256 (288)
Q Consensus       209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~  256 (288)
                      ++|++||.|++||.|+..+  .-..+|.|..+|+|.--.+.+|.++..
T Consensus        64 L~V~dG~~V~~G~~laewD--p~t~pIisE~~G~V~f~dii~G~t~~e  109 (190)
T 2auk_A           64 LAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVRFTDMIDGQTITR  109 (190)
T ss_dssp             ESSCTTCEECTTCEEEECC--SSEEEEECSSCEEEEEESCCBTTTEEE
T ss_pred             EEecCCCEEcCCCEEEEEc--CcCCcEEeccccEEEEEeccCCcceEE
Confidence            7999999999999999764  556789999999999888888877655

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=87.20  E-value=0.12  Score=49.99  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=0.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM  229 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam  229 (288)
                      ...|.||..|+|.++++++||.|..||+|++|+..
T Consensus        45 ~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~   79 (428)
T 3dva_I           45 VVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   79 (428)
T ss_dssp             -----------------------------------
T ss_pred             eEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            45799999999999999999999999999999853

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=87.19  E-value=0.079  Score=48.84  Aligned_cols=55  Identities=13%  Similarity=0.071  Sum_probs=41.0

Q ss_pred             ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .|+.|+.-..=..-..+++-+ +..|.|+.+|+|.++++++||.|.+ ++|++|++.
T Consensus        11 ~v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           11 EVKRGNIEKNVVATGSIESIN-TVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST   66 (369)
T ss_dssp             CCCEECCCCCCEEEEEEECSS-CCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred             EEEecceeEEEEEeEEEEeee-eEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence            334444444444455666543 4679999999999999999999999 999999853

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=87.04  E-value=0.11  Score=45.20  Aligned_cols=45  Identities=16%  Similarity=0.079  Sum_probs=36.0

Q ss_pred             ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEE--------------------------E--eeCCCCeecc-ceeE
Q psy2807         210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV--------------------------R--SSNLDYNFMR-PLQL  260 (288)
Q Consensus       210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~--------------------------i--~v~~Gd~V~~-~~L~  260 (288)
                      .|+.|+.|++||+|+      -+..|-|.++|+|.-                          +  +|++||.|.+ +.|+
T Consensus        84 ~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~  157 (193)
T 2xha_A           84 GLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA  157 (193)
T ss_dssp             TCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred             EcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence            389999999999998      356678888888752                          3  7888888888 8776

>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A

Probab=83.38  E-value=0.62  Score=43.48  Aligned_cols=59  Identities=8%  Similarity=-0.155  Sum_probs=43.1

Q ss_pred             eeecCCcEEEEE--EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         197 EIGAPMPGNIIE--VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       197 ~i~apm~G~V~~--v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      .|.|+..|.+..  -.++.|+.|++||+|+.+-.    .+|+||.+|.+.-.  . .-.|.. +.++.+
T Consensus       265 ~v~a~~~g~~~~~~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i  326 (350)
T 2bco_A          265 TIVRLHDDFDFMFDDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALM  326 (350)
T ss_dssp             EEECCSSSEEESSCTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEE
T ss_pred             EEEcCCCCeEEeccccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEE
Confidence            578998885552  45899999999999999854    78999999986543  2 455555 544433

>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*

Probab=81.47  E-value=1.9  Score=36.71  Aligned_cols=14  Identities=14%  Similarity=0.131  Sum_probs=8.8

Q ss_pred             CeeecCCcEEEEEE
Q psy2807         196 GEIGAPMPGNIIEV  209 (288)
Q Consensus       196 ~~i~apm~G~V~~v  209 (288)
                      ..|.|+..|+|+.+
T Consensus        49 tpV~A~~~G~V~~~   62 (182)
T 3it5_A           49 YSVVAAHAGTVRVL   62 (182)
T ss_dssp             CEEECSSSEEEEEE
T ss_pred             CEEEeccCEEEEEE
Confidence            45667777766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	4e-12
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-04
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	4e-04
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	8e-04
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	0.001
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	0.001
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	0.002
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	0.004

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           + A     GEI AP+ G + ++  K G  VK    ++V+  MK ET I+A  DG 
Sbjct: 1   AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGK 55

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           G I++   K G +V ++DVL  +   K    I +   G 
Sbjct: 16  GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGK 54

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
             + E   K G  V + D +  +   K    I +  DGV
Sbjct: 19  VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGV 57

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 197 EIGAPMPGN----IIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           E+  P  G     + EV  KVG +V     LI +   K    + A   GV
Sbjct: 4   EVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGV 53

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
             G +IE+  K G  ++    L+V+   K    + +   GV
Sbjct: 11  GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGV 51

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 197 EIGAPMPGNI-------IEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
            + +PM G          +   +VGQ+V   D L ++  MK    I A   G 
Sbjct: 6   IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGT 58

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
           IG     +II V+  VG  +  +D LI +   K    + A   GV
Sbjct: 10  IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGV 54

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
             +     K G  V +++VL+ +   K    + ASADG+
Sbjct: 17  ATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGI 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1rqba1	168	Transcarboxylase 5S subunit, C-terminal domain {Pr	99.87
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.84
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.79
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.71
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.62
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.61
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.59
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.56
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.52
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.43
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.42
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	97.94
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.46
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.4
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	97.36
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	97.12
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.92
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.85
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	96.83
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	96.62
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.38
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	95.97
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.9
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	94.82
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	94.63
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	94.35
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	94.14
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	93.96
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	93.77
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	92.21
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	91.36
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	88.62
d2tpta3	105	Thymidine phosphorylase {Escherichia coli [TaxId:	82.48

>d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: post-HMGL domain-like
family: Conserved carboxylase domain
domain: Transcarboxylase 5S subunit, C-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

Probab=99.87  E-value=6.4e-24  Score=180.82  Aligned_cols=92  Identities=12%  Similarity=0.065  Sum_probs=78.8

Q ss_pred             CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHh--hCCCCcc--
Q psy2807          21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKV--LGSLKDH--   96 (288)
Q Consensus        21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~v--L~g~~~i--   96 (288)
                      ..+|||||||||||||||||+|||+|.    +|+      .+|+|+++|++|+||+||++|++++++++  ++|++++  
T Consensus        34 ~~lG~~~~VTPsSqvVG~~A~~nV~~g----~~~------~~~~e~~~~~~G~~G~~P~~~~~~~~k~~~~~~g~~pit~  103 (168)
T d1rqba1          34 KAAGFPPLVTPSSQIVGTQAVFNVMMG----EYK------RMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQ  103 (168)
T ss_dssp             HHTTCCCCCTTHHHHHHHHHHHHHHHC----TTS------SCCHHHHHHHTTTTCCCSSCCCHHHHHHHHHHHCCCCCCS
T ss_pred             HhcCCCceeCcHHHHHHHHHHHHHHhh----hcc------cccHHHHHHhcccccCCCCCCCHHHHHHHHhccCCCCCCC
Confidence            468999999999999999999987774    466      89999999999999999999999999866  6688777  


Q ss_pred             ----------------cccc----CCcccceeecccCCCCCCCcccccCC
Q psy2807          97 ----------------TLDR----KPECDLMMEDEFGPVDRLPTRIFLNG  126 (288)
Q Consensus        97 ----------------L~~~----~~deDvL~~a~fg~~~~l~t~~F~~g  126 (288)
                                      +.+.    .++||+|.|++||++.    ..|+..
T Consensus       104 RPgd~l~pd~~~~~~el~~~~g~~~sdedlLsyaLyP~V~----~~f~~~  149 (168)
T d1rqba1         104 RPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVA----PVFFEH  149 (168)
T ss_dssp             CGGGGCCCCHHHHHHHHTTSTTCCSSHHHHHHHHHCTTTH----HHHHHH
T ss_pred             CchhhccccHHHHHHHHHHHhCCCCCHHHHHHHHcCChhH----HHHHHH
Confidence                            1111    6899999999999988    788753

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.84  E-value=4.9e-21  Score=143.06  Aligned_cols=72  Identities=26%  Similarity=0.351  Sum_probs=68.8

Q ss_pred             CCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807         191 DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL  262 (288)
Q Consensus       191 ~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i  262 (288)
                      +.+..+.|+|||+|+|++|+|++||.|++||+|+.+|+|||+++|+||++|+|+++++++||.|.. ++|++|
T Consensus         4 ~~~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_           4 GKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             SCCCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             CCCCCCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            445567999999999999999999999999999999999999999999999999999999999999 999987

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.9e-20  Score=137.45  Aligned_cols=68  Identities=22%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             CeeecCCcEEEE-------EEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         196 GEIGAPMPGNII-------EVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       196 ~~i~apm~G~V~-------~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..|+|||+|+++       +++|++||+|++||+|++||||||+++|+||.+|+|++++++.||.|.. ++|+.|+
T Consensus         5 ~~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_           5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CEEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            469999999995       6889999999999999999999999999999999999999999999999 9999885

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.71  E-value=1.4e-17  Score=124.53  Aligned_cols=71  Identities=23%  Similarity=0.305  Sum_probs=66.3

Q ss_pred             eecC---CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCC
Q psy2807         198 IGAP---MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKT  268 (288)
Q Consensus       198 i~ap---m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~  268 (288)
                      |+.|   +.|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++||.|.. ++|+.|++.+.+
T Consensus         4 i~~P~~g~~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~~a   78 (79)
T d1iyua_           4 IRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA   78 (79)
T ss_dssp             EECCCCSSEEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCCSC
T ss_pred             EECCCCCCCEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCccC
Confidence            4555   6899999999999999999999999999999999999999999999999999999 999999987643

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=6.2e-16  Score=115.77  Aligned_cols=62  Identities=24%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .++|++|++++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|.. ++|+.|+.
T Consensus        14 ~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   76 (80)
T d1qjoa_          14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            469999999999999999999999999999999999999999999999999999 99999984

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.61  E-value=7e-16  Score=115.28  Aligned_cols=62  Identities=23%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+|.+|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|.. ++|+.|+.
T Consensus        15 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          15 DGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             CEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             EEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            499999999999999999999999999999999999999999999999999999 99999874

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.59  E-value=1.7e-16  Score=118.97  Aligned_cols=61  Identities=20%  Similarity=0.143  Sum_probs=59.4

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      .|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|.. ++|+.|+
T Consensus        15 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie   76 (80)
T d1laba_          15 EGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD   76 (80)
T ss_dssp             SEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBB
T ss_pred             eEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            499999999999999999999999999999999999999999999999999999 9999886

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.4e-15  Score=113.48  Aligned_cols=64  Identities=22%  Similarity=0.117  Sum_probs=61.3

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR  266 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~  266 (288)
                      .|+|++|++++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|+.|+...
T Consensus        18 eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~~   82 (87)
T d1k8ma_          18 EVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (87)
T ss_dssp             CEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             eEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            499999999999999999999999999999999999999999999999999999 9999998543

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.52  E-value=1.8e-15  Score=113.39  Aligned_cols=64  Identities=22%  Similarity=0.260  Sum_probs=61.3

Q ss_pred             CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807         202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV  265 (288)
Q Consensus       202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~  265 (288)
                      .+++|++|++++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|+.|++.
T Consensus        14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~   78 (81)
T d1gjxa_          14 ENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             SSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             cEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            4689999999999999999999999999999999999999999999999999999 999999853

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.7e-13  Score=105.65  Aligned_cols=61  Identities=13%  Similarity=0.093  Sum_probs=58.5

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEe
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLN  263 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~  263 (288)
                      .|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|.. ++|+.|.
T Consensus        19 eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1          19 MGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             EEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             EEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence            39999999999999999999999999999999999999999999999997 5898 9999995

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.8e-15  Score=113.26  Aligned_cols=62  Identities=19%  Similarity=0.212  Sum_probs=60.0

Q ss_pred             cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|.. ++|+.|+.
T Consensus        16 eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          16 DATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            499999999999999999999999999999999999999999999999999999 99999873

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.94  E-value=1.7e-06  Score=73.20  Aligned_cols=61  Identities=16%  Similarity=0.109  Sum_probs=54.3

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccce--------------------------------------------
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT--------------------------------------------  231 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKm--------------------------------------------  231 (288)
                      ..|.|+.+|.|.+++|++||.|++||+|+.|+....                                            
T Consensus        16 ~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~   95 (237)
T d1vf7a_          16 AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQ   95 (237)
T ss_dssp             EEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             EEEEeecCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcch
Confidence            469999999999999999999999999999986211                                            


Q ss_pred             -------------eEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807         232 -------------ETLIHASADGVHKVRSSNLDYNFMR  256 (288)
Q Consensus       232 -------------e~~I~Ap~~G~V~~i~v~~Gd~V~~  256 (288)
                                   .+.|+||++|+|.++.+.+|+.+..
T Consensus        96 a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~  133 (237)
T d1vf7a_          96 SKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTN  133 (237)
T ss_dssp             HHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECT
T ss_pred             hHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcC
Confidence                         1589999999999999999999877

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=8.8e-05  Score=58.58  Aligned_cols=47  Identities=28%  Similarity=0.368  Sum_probs=41.1

Q ss_pred             EEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCC
Q psy2807         204 GNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNL  250 (288)
Q Consensus       204 G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~  250 (288)
                      |.|+.+.. ++|+.|++|+.+++||+.|...+|.||++|+|.+++-..
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~l   82 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLAL   82 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHH
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhhh
Confidence            45666654 899999999999999999999999999999999887543

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.40  E-value=0.00011  Score=58.24  Aligned_cols=48  Identities=17%  Similarity=0.227  Sum_probs=41.0

Q ss_pred             EEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC
Q psy2807         204 GNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLD  251 (288)
Q Consensus       204 G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G  251 (288)
                      |.|+.+.. ++|+.|++|+.++.||+.|...+|.||++|+|.+++-...
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~l~   84 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLT   84 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHH
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeehhhhh
Confidence            34555554 7999999999999999999999999999999998875443

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=9.9e-05  Score=53.78  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ..|.||..|+|.+|+|++||.|+.||+|+.||
T Consensus        49 ~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             EEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            47999999999999999999999999999987

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.12  E-value=0.00024  Score=51.37  Aligned_cols=34  Identities=26%  Similarity=0.501  Sum_probs=31.8

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++||.|+.||+|+.||.
T Consensus        41 ~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   74 (79)
T d1iyua_          41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             EEEEEeccccEEEEEeeCCCCEECCCCEEEEEec
Confidence            3579999999999999999999999999999984

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.92  E-value=0.00035  Score=50.24  Aligned_cols=31  Identities=32%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             CeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807         196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM  226 (288)
Q Consensus       196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l  226 (288)
                      ..|.||..|+|.++++++||.|+.||+|+.|
T Consensus        46 ~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          46 TEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             EEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             EEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            5799999999999999999999999999987

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00037  Score=50.43  Aligned_cols=34  Identities=32%  Similarity=0.637  Sum_probs=32.0

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++||.|+.||+|+.||+
T Consensus        43 ~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   76 (80)
T d1qjoa_          43 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             cceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            4679999999999999999999999999999985

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.83  E-value=0.00064  Score=49.11  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||.+|+|.++++++||.|+.|++|+.|+.
T Consensus        44 ~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          44 VMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             EEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            3579999999999999999999999999999874

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.001  Score=48.88  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=31.7

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++||.|+.|++|+.|+.
T Consensus        47 ~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~   80 (87)
T d1k8ma_          47 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (87)
T ss_dssp             EEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             eEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            3579999999999999999999999999999985

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.38  E-value=0.00023  Score=51.72  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=31.7

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...|.||.+|+|.++++++||.|+.||+|+.||+
T Consensus        44 ~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~   77 (80)
T d1laba_          44 VVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA   77 (80)
T ss_dssp             EEEECCSSCEECCCBSSCSSSEECSSSCSBCBBC
T ss_pred             EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            4679999999999999999999999999999885

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.97  E-value=0.00052  Score=49.74  Aligned_cols=34  Identities=26%  Similarity=0.533  Sum_probs=31.6

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      ...+.||.+|+|.++++++||.|+.||+|+.||+
T Consensus        44 ~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~   77 (81)
T d1gjxa_          44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             EEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            3578999999999999999999999999999985

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.00063  Score=49.33  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS  227 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE  227 (288)
                      ...|.||..|+|.++++++||.|+.||+|+.||
T Consensus        45 ~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~   77 (80)
T d1pmra_          45 VLEVPASADGILDAVLEDEGTTVTSRQILGRLR   77 (80)
T ss_dssp             CCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred             EEEEeccCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            467999999999999999999999999999987

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=94.82  E-value=0.028  Score=45.33  Aligned_cols=64  Identities=13%  Similarity=0.036  Sum_probs=39.0

Q ss_pred             ecCCcEEEEEEecCCCCEEecCCEEEEEecc-------ceeEEEEcCCCeEEEEEeeCCCCeecc--ceeEEE
Q psy2807         199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM-------KTETLIHASADGVHKVRSSNLDYNFMR--PLQLSL  262 (288)
Q Consensus       199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam-------Kme~~I~Ap~~G~V~~i~v~~Gd~V~~--~~L~~i  262 (288)
                      +..|.|.-.+++|++||+|++||+|+.+.--       .+.+.+.-.-......+.+.....|..  +.|+.|
T Consensus        85 TV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~~i~~~~~~~v~~g~~~i~~v  157 (158)
T d1gpra_          85 TVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASGSVNREQEDIVKI  157 (158)
T ss_dssp             CGGGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBCCEEEEESSCCTTCCEEECCCSEECTTCBCCEEE
T ss_pred             ccccCCcceEEEEcCCCEEcCCCEEEEeCHHHHHhhCCCCceEEEEEeccccceEEEecCCcEEcCCceEEEE
Confidence            4566777788899999999999999997642       223333222222223344444444444  666665

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.63  E-value=0.012  Score=48.53  Aligned_cols=39  Identities=5%  Similarity=0.059  Sum_probs=33.9

Q ss_pred             EEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807         225 VMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG  264 (288)
Q Consensus       225 ~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~  264 (288)
                      .|++.+. .+|.|+++|+|.+++|++|+.|.+ ++|++|+.
T Consensus         9 ~i~a~~~-~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~   48 (237)
T d1vf7a_           9 RTNAFRI-AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   48 (237)
T ss_dssp             ECEESCE-EEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEeeEE-EEEEeecCEEEEEEECCCcCEECCCCEEEEEeh
Confidence            4566443 579999999999999999999999 99999974

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.025  Score=42.33  Aligned_cols=34  Identities=12%  Similarity=0.123  Sum_probs=30.4

Q ss_pred             CCeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807         195 AGEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV  228 (288)
Q Consensus       195 ~~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa  228 (288)
                      ...|.||..|+|.++++++|| .|+-|++|++|..
T Consensus        48 ~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~   82 (102)
T d1y8ob1          48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (102)
T ss_dssp             EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred             EEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEec
Confidence            357999999999999999998 5999999999853

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.059  Score=42.97  Aligned_cols=63  Identities=19%  Similarity=0.078  Sum_probs=38.9

Q ss_pred             cCCcEEEEEEecCCCCEEecCCEEEEEeccc-------eeEEEEcCCCeEEEEEeeCCCCeecc--ceeEEEe
Q psy2807         200 APMPGNIIEVKAKVGQQVKKNDVLIVMSVMK-------TETLIHASADGVHKVRSSNLDYNFMR--PLQLSLN  263 (288)
Q Consensus       200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK-------me~~I~Ap~~G~V~~i~v~~Gd~V~~--~~L~~i~  263 (288)
                      ..+.|.=.+++|++||+|++||+|+.+.--.       +.+.+--.-......+....|+ |..  ++|+++.
T Consensus        78 V~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g~-v~~g~~~i~~i~  149 (150)
T d2f3ga_          78 VELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGS-VTVGETPVIRIK  149 (150)
T ss_dssp             GGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGGGCSEEEECCSE-ECTTTSEEEEEE
T ss_pred             hhcCCcceEEEecCCCEECCCCEEEEEcHHHHHhcCCCCeeEEEEECcHhcceeeecCCc-EeeCCcEEEEEE
Confidence            3455566778999999999999999986422       2233322222333445555664 444  5777764

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=93.96  E-value=0.052  Score=43.66  Aligned_cols=20  Identities=5%  Similarity=-0.165  Sum_probs=17.6

Q ss_pred             EEEeeCCCCeecc-ceeEEEe
Q psy2807         244 KVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       244 ~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      =+.++++||.|.. ++|++++
T Consensus        93 F~~~v~~Gd~Vk~G~~L~~~D  113 (158)
T d1gpra_          93 FTSFVSEGDRVEPGQKLLEVD  113 (158)
T ss_dssp             EEECCCTTCEECTTCEEEEEC
T ss_pred             eEEEEcCCCEEcCCCEEEEeC
Confidence            3678889999999 9999987

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.03  Score=44.74  Aligned_cols=62  Identities=11%  Similarity=0.171  Sum_probs=37.2

Q ss_pred             CCCeeecCCcEEEEEEecCCCC---EEecC-CEEEEEe--ccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQ---QVKKN-DVLIVMS--VMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd---~V~~G-~~l~~lE--amKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..+.|.||..|+|..+.=..-.   +-..| +.|..|-  +.+|        +|.-=+.++++||.|.. ++|++++
T Consensus        37 ~~~~v~AP~dG~V~~v~~T~HAigi~t~~G~eiLIHiGidTV~L--------~G~gF~~~v~~Gd~V~~G~~L~~~D  105 (150)
T d2f3ga_          37 TGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVEL--------KGEGFKRIAEEGQRVKVGDTVIEFD  105 (150)
T ss_dssp             CSSEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGG--------TTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             CCCeEEeecCEEEEEECCCCCEEEEEeCCceEEEEEEccchhhc--------CCcceEEEecCCCEECCCCEEEEEc
Confidence            3578999999999887532111   11122 2222221  1111        23334678999999999 9999997

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=92.21  E-value=0.11  Score=41.50  Aligned_cols=64  Identities=13%  Similarity=0.182  Sum_probs=36.9

Q ss_pred             CCCeeecCCcEEEEEEecCCCCE-Ee--cCC-EEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807         194 TAGEIGAPMPGNIIEVKAKVGQQ-VK--KND-VLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN  263 (288)
Q Consensus       194 ~~~~i~apm~G~V~~v~V~~Gd~-V~--~G~-~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~  263 (288)
                      ..+.|.||..|+|..+.-..-.. ++  .|- .|..+--.      +..-+|.-=+.++++||.|.+ ++|++++
T Consensus        43 ~~~~v~AP~dG~I~~i~~T~HAigi~t~~G~eiLIHiGid------TV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  111 (154)
T d2gpra_          43 KSNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLD------TVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             SSSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSS------GGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             cCCEEEEecCeEEEEECCCCcEEEEEeCCCCEEEEEEccc------ccccCCceeEEEecCCCEEcCCCEEEEEc
Confidence            35789999999998764211110 11  121 22222100      111224444778999999999 9999986

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=91.36  E-value=0.12  Score=41.21  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             ecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      +..+.|.-.+++|++||+|++||+|+.+.-
T Consensus        83 TV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~  112 (154)
T d2gpra_          83 TVSLDGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             GGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             ccccCCceeEEEecCCCEEcCCCEEEEEcH
Confidence            567888899999999999999999999863

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.62  E-value=0.28  Score=36.24  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=21.4

Q ss_pred             CCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807         201 PMPGNIIEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      |-.|  +.++++.||.|++||+|++|=+
T Consensus        44 ~~vG--i~l~~k~Gd~V~~Gd~l~~i~~   69 (103)
T d1brwa3          44 LAVG--IVLHKKIGDRVQKGEALATIHS   69 (103)
T ss_dssp             TTCE--EEESCCTTCEECTTCEEEEEEE
T ss_pred             cccc--eEEeccCCCEEcCCCeEEEEEc
Confidence            4455  4589999999999999998865

>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=0.43  Score=35.28  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             EEEecCCCCEEecCCEEEEEec
Q psy2807         207 IEVKAKVGQQVKKNDVLIVMSV  228 (288)
Q Consensus       207 ~~v~V~~Gd~V~~G~~l~~lEa  228 (288)
                      +.++++.||.|++||+|+.|=+
T Consensus        48 i~l~~k~Gd~V~~Gd~l~~i~~   69 (105)
T d2tpta3          48 FTDMARLGDQVDGQRPLAVIHA   69 (105)
T ss_dssp             EESCCCTTCEEBTTBCSEEEEE
T ss_pred             EEEEecCCCEEcCCCeEEEEEC
Confidence            4588999999999999999876