Psyllid ID: psy2823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MMDCLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mmdclvpppgtlsrLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS
Flexible Loop (DISEMBL)
mmdclvpppgtlsrllseRDKAVLEMDKSKEELERSQAtlatlstsaeldrLQEKYDKTCADLRRAQAelrvvqadnervrseektmqekveksqgevyrlkaklentqgemesmkeeyers
Low Complexity Region (SEG)
MMDCLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS
Disordered region (IsUnstruct)
**************************************************************************************************************************
Disordered Region (DISOPRED)
**************************************************************************************************************************
Disordered Region (DISEMBL)
MMDCLVPPPGTLSRLLSERDKAVLE***********QATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQAD******************QGEVYRLKAKLENT**************
Disordered Region (DISPRO)
**DCLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMDCLVPPPGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
242015610	1490	trichohyalin, putative [Pediculus humanu	0.811	0.066	0.693	3e-28
332017518	1613	ERC protein 2 [Acromyrmex echinatior]	0.811	0.061	0.63	3e-26
307172617	2103	ELKS/RAB6-interacting/CAST family member	0.811	0.047	0.62	7e-26
357602530	2057	hypothetical protein KGM_11786 [Danaus p	0.803	0.047	0.66	1e-25
307208455	1550	ELKS/RAB6-interacting/CAST family member	0.811	0.063	0.6	5e-24
345479003	1869	PREDICTED: hypothetical protein LOC10012	0.811	0.052	0.58	7e-24
170065374	1391	bruchpilot [Culex quinquefasciatus] gi|1	0.811	0.071	0.663	3e-23
365733625	1908	bruchpilot [Apis mellifera]	0.811	0.051	0.613	3e-23
195029297	1151	GH19929 [Drosophila grimshawi] gi|193903	0.385	0.040	0.65	3e-20
157118399	1082	hypothetical protein AaeL_AAEL008273 [Ae	0.5	0.056	0.712	7e-20

>gi|242015610|ref|XP_002428446.1| trichohyalin, putative [Pediculus humanus corporis] gi|212513058|gb|EEB15708.1| trichohyalin, putative [Pediculus humanus corporis]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 83/101 (82%), Gaps = 2/101 (1%)

Query: 24  LEMDKSKEELERSQATL--ATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 81
           LE ++ K +LERSQ T   +TLSTS ELDR+QEK +K  A+LRRAQAELRVVQADNER  
Sbjct: 269 LENERLKHDLERSQTTFGRSTLSTSQELDRVQEKAEKMAAELRRAQAELRVVQADNERAY 328

Query: 82  SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
           SE  T+QEK+EKSQGEVYRLKA+LEN Q E ES++EEY+RS
Sbjct: 329 SETATLQEKLEKSQGEVYRLKARLENAQAERESLREEYDRS 369

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017518|gb|EGI58229.1| ERC protein 2 [Acromyrmex echinatior]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 83/100 (83%), Gaps = 1/100 (1%)

Query: 24  LEMDKSKEELERSQA-TLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS 82
           LE ++ + ++ERSQ    +TL++S E++R+QE+ DKT  +LRRAQAELRV QADNER R+
Sbjct: 245 LENERLRHDMERSQGYGRSTLNSSQEMERVQERADKTATELRRAQAELRVTQADNERARA 304

Query: 83  EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
           E  T+QEKVEKSQGEVYRLKA+LEN QGE ES++EEY+R+
Sbjct: 305 EAATLQEKVEKSQGEVYRLKARLENAQGEQESLREEYDRA 344

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172617|gb|EFN63976.1| ELKS/RAB6-interacting/CAST family member 1 [Camponotus floridanus]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 82/100 (82%), Gaps = 1/100 (1%)

Query: 24  LEMDKSKEELERSQA-TLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS 82
           LE ++ + ++ERSQ     TL++S E++R+QE+ DK+  +LRRAQAELRV QADNER R+
Sbjct: 245 LENERLRHDMERSQGYGRGTLNSSQEMERIQERADKSATELRRAQAELRVTQADNERARA 304

Query: 83  EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
           E  T+QEKVEKSQGEVYRLKA+LEN QGE ES++EEY+R+
Sbjct: 305 EAATLQEKVEKSQGEVYRLKARLENAQGEQESLREEYDRA 344

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357602530|gb|EHJ63437.1| hypothetical protein KGM_11786 [Danaus plexippus]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 79/100 (79%), Gaps = 2/100 (2%)

Query: 24  LEMDKSKEELERSQATL--ATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 81
           LE ++ K ELERSQ T   +TL+TS ELDR+QEK DK+ A+LRR QAELRV QAD ER R
Sbjct: 468 LENERLKHELERSQTTFGRSTLTTSQELDRVQEKADKSAAELRRTQAELRVTQADAERSR 527

Query: 82  SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121
            E   +Q+K+EKSQGEVYRLKAKLEN Q E +S+KEEY+R
Sbjct: 528 VEASALQDKLEKSQGEVYRLKAKLENAQTEQDSLKEEYDR 567

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208455|gb|EFN85822.1| ELKS/RAB6-interacting/CAST family member 1 [Harpegnathos saltator]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 81/100 (81%), Gaps = 1/100 (1%)

Query: 24  LEMDKSKEELERSQA-TLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS 82
           LE ++ + ++ERS     +TL++S E++R+QE+ +K  ADLRRAQAELRV QADNER R+
Sbjct: 245 LENERLRHDIERSSTYGRSTLNSSQEMERIQERAEKAAADLRRAQAELRVTQADNERARA 304

Query: 83  EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
           E  ++QEKVEKSQGEVYRLKA+LEN Q E ES++EEY+R+
Sbjct: 305 EAASLQEKVEKSQGEVYRLKARLENAQTEQESLREEYDRA 344

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479003|ref|XP_001606987.2| PREDICTED: hypothetical protein LOC100123358 [Nasonia vitripennis]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 82/100 (82%), Gaps = 1/100 (1%)

Query: 24  LEMDKSKEELERSQATLA-TLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS 82
           LE ++ + E+ERSQ++    ++++ E+DR+QE+ +K+ ++LRRAQAELRV QADNER R+
Sbjct: 660 LENERLRHEVERSQSSYGRAINSTQEMDRIQERAEKSNSELRRAQAELRVTQADNERARA 719

Query: 83  EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
           E   +QEKVEKSQGEVYRLKA+LEN Q E ES++EEY+R+
Sbjct: 720 EVAALQEKVEKSQGEVYRLKARLENAQSEQESLREEYDRA 759

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170065374|ref|XP_001867912.1| bruchpilot [Culex quinquefasciatus] gi|167882490|gb|EDS45873.1| bruchpilot [Culex quinquefasciatus]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 2/101 (1%)

Query: 24  LEMDKSKEELERSQATL--ATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 81
           LE ++ + +LERSQ T   +TLSTS ELDR QE+ DKT A+LRR QAELRV Q+D ER R
Sbjct: 248 LENERLRADLERSQTTFGRSTLSTSQELDRAQERADKTSAELRRTQAELRVTQSDAERAR 307

Query: 82  SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
            E   +QEK+EKSQGEVYRLKAKLEN QGE ES+K+E ERS
Sbjct: 308 GEAAALQEKLEKSQGEVYRLKAKLENAQGEQESIKQEMERS 348

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|365733625|ref|NP_001242968.1| bruchpilot [Apis mellifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 83/101 (82%), Gaps = 2/101 (1%)

Query: 24  LEMDKSKEELERSQATL--ATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 81
           LE ++ + E+ERSQ +   +TL++S E+DR+QE+ +K  A+LRRAQAELRV QADNER R
Sbjct: 649 LENERLRHEIERSQTSYGRSTLNSSQEMDRIQERAEKAAAELRRAQAELRVTQADNERAR 708

Query: 82  SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
           +E   +QEKVEKSQGEVYRLKA+LEN QGE ES+++EY+R+
Sbjct: 709 AEAAALQEKVEKSQGEVYRLKARLENAQGEQESLRDEYDRA 749

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029297|ref|XP_001987510.1| GH19929 [Drosophila grimshawi] gi|193903510|gb|EDW02377.1| GH19929 [Drosophila grimshawi]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 64/80 (80%)

Query: 43  LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLK 102
           ++TS ELDR QE+ DK  A+LRR QAELRV Q+D ER R E   +QEK+EKSQGEVYRLK
Sbjct: 1   MTTSQELDRAQERADKAAAELRRTQAELRVTQSDAERAREEGAALQEKLEKSQGEVYRLK 60

Query: 103 AKLENTQGEMESMKEEYERS 122
           AKLEN QGE ES+++E E++
Sbjct: 61  AKLENAQGEQESLRQELEKA 80

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118399|ref|XP_001659096.1| hypothetical protein AaeL_AAEL008273 [Aedes aegypti] gi|108875751|gb|EAT39976.1| AAEL008273-PA, partial [Aedes aegypti]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 66/80 (82%)

Query: 43  LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLK 102
           L+TS ELDR QE+ DKT A+LRR QAELRV Q+D ER R+E   +QEK+EKSQGEVYRLK
Sbjct: 1   LTTSQELDRAQERADKTSAELRRTQAELRVTQSDAERARAEAAALQEKLEKSQGEVYRLK 60

Query: 103 AKLENTQGEMESMKEEYERS 122
           AKLEN QGE ES+K+E ERS
Sbjct: 61  AKLENAQGEQESIKQEMERS 80

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
FB|FBgn0259246	1786	brp "bruchpilot" [Drosophila m	0.885	0.060	0.535	6e-22
ASPGD|ASPL0000052042	732	AN0762 [Emericella nidulans (t	0.852	0.142	0.268	3.1e-06
TAIR|locus:2009215	323	PMD2 "AT1G06530" [Arabidopsis	0.852	0.321	0.259	8.4e-06
TAIR|locus:504955294	1221	AT4G27595 "AT4G27595" [Arabido	0.885	0.088	0.289	9.4e-06
UNIPROTKB|H7C0P0	877	CEP250 "Centrosome-associated	0.852	0.118	0.258	2.2e-05
ASPGD|ASPL0000032739	941	AN5595 [Emericella nidulans (t	0.868	0.112	0.272	2.4e-05
UNIPROTKB|Q05682	793	CALD1 "Caldesmon" [Homo sapien	0.754	0.116	0.315	2.5e-05
MGI|MGI:2448587	202	Ccdc153 "coiled-coil domain co	0.770	0.465	0.313	2.9e-05
UNIPROTKB|A6QNZ5	762	MGC151537 "Uncharacterized pro	0.860	0.137	0.324	3.8e-05
UNIPROTKB|I3LTF5	622	I3LTF5 "Uncharacterized protei	0.745	0.146	0.322	4.8e-05

FB|FBgn0259246 brp "bruchpilot" [Drosophila melanogaster (taxid:7227)]

 Score = 271 (100.5 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 61/114 (53%), Positives = 80/114 (70%)

Query:    15 LLSERDKAVLEMDKSKEEL--ERSQATLA----TLSTSAELDRLQEKYDKTCADLRRAQA 68
             L +ER K  LE  ++ ++L  E  + +      T++TS ELDR QE+ DK  A+LRR QA
Sbjct:   592 LENERLKHDLERSQNVQKLMFETGKISTTFGRTTMTTSQELDRAQERADKASAELRRTQA 651

Query:    69 ELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
             ELRV Q+D ER R E   +QEK+EKSQGEVYRLKAKLEN QGE ES+++E E++
Sbjct:   652 ELRVTQSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKA 705

GO:0005262 "calcium channel activity" evidence=IMP

GO:0007269 "neurotransmitter secretion" evidence=IMP

GO:0048790 "maintenance of presynaptic active zone structure" evidence=IMP

GO:0048167 "regulation of synaptic plasticity" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IDA;IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0048789 "cytoskeletal matrix organization at active zone" evidence=IMP

GO:0048788 "presynaptic cytoskeletal matrix assembled at active zones" evidence=IDA

GO:0007615 "anesthesia-resistant memory" evidence=IDA

GO:0007614 "short-term memory" evidence=IDA

ASPGD|ASPL0000052042 AN0762 [Emericella nidulans (taxid:162425)]

 Score = 100 (40.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
 Identities = 29/108 (26%), Positives = 55/108 (50%)

Query:     2 MDCLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCA 61
             +D LV    T+ +L SERD+    +D+   +LE ++  L      A   +L++  D    
Sbjct:   142 IDSLVVAEETVPKLTSERDQLQSSVDRLTSQLEDTERRLE--EERAARKKLEDNQDAKIK 199

Query:    62 DLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109
             ++  + + +   + +N    S+EK+++EKVE  +  +  LKA  E +Q
Sbjct:   200 EIETSWSAVLTEKTNNWT--SKEKSLEEKVENQERLIKELKASYEVSQ 245

GO:0003674 "molecular_function" evidence=ND

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

TAIR|locus:2009215 PMD2 "AT1G06530" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 28/108 (25%), Positives = 59/108 (54%)

Query:    17 SERDKAVLEMDKSKEELERSQATLATLSTS-AELDRLQEKYDKTCADLRRAQAELRVVQA 75
             +E ++A  E +K + E+ +    +  L    A L  ++E+ +K   +L      L V + 
Sbjct:   123 TEGEEATAEAEKLRSEISQKGGGIEELEKEVAGLRTVKEENEKRMKELESKLGALEVKEL 182

Query:    76 D--NERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121
             D  N++ R+EE+ M+EK++  + EV+ LK K+++ + ++   K E ++
Sbjct:   183 DEKNKKFRAEEE-MREKIDNKEKEVHDLKEKIKSLESDVAKGKTELQK 229

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 33/114 (28%), Positives = 59/114 (51%)

Query:    12 LSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELR 71
             +  LLSE+ +   E++  K+E E+ +  + +L+   +   ++ K  K    L   QAEL 
Sbjct:   437 IQNLLSEKTELATELENCKKEEEKIKKAMESLTLDLQEVSVEAKEAKE--KLLTCQAELE 494

Query:    72 VVQADNERVRSEEKTMQEK----VEKSQGEVYRLKAKLENTQGEMESMKEEYER 121
             +     E ++  EK   EK    +E ++ E+  LK+ LENT+ E  + K E+E+
Sbjct:   495 LCGVQIESLKLAEKDTNEKHGKMLEDARNEIDGLKSSLENTENEFFNSKTEWEQ 548

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|H7C0P0 CEP250 "Centrosome-associated protein CEP250" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 29/112 (25%), Positives = 56/112 (50%)

Query:    10 GTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAE 69
             G  S LLS+R++ ++ + +  +E  R Q  L   S  ++LD  Q         L +   E
Sbjct:   255 GETSLLLSQREQEIVVLQQQLQEA-REQGELKEQSLQSQLDEAQRA-------LAQRDQE 306

Query:    70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121
             L  +Q + ++ + +E+ ++EK +  QG + +    L+   GE++  KE+  R
Sbjct:   307 LEALQQEQQQAQGQEERVKEKADALQGALEQAHMTLKERHGELQDHKEQARR 358

GO:0005814 "centriole" evidence=IEA

ASPGD|ASPL0000032739 AN5595 [Emericella nidulans (taxid:162425)]

 Score = 112 (44.5 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 30/110 (27%), Positives = 61/110 (55%)

Query:    15 LLSERDK-AVLEMDKSKEELER-SQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRV 72
             LL  R+  +  ++  SK E ++ ++A +A L +   +  +Q++ D+ C   RRA+AE+  
Sbjct:   467 LLESRETHSSRDLGNSKNEAQQHAEAEIARLQSV--IQEIQQEKDEHCEAHRRAEAEIDR 524

Query:    73 VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
             +QA   +++ E+   +E  E+++ E  RL+  +E  Q E +   E + R+
Sbjct:   525 LQAVIHQIQQEKDEHREAHERAEAETTRLQTIVEEVQQEKDEQHEAHGRA 574

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q05682 CALD1 "Caldesmon" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 30/95 (31%), Positives = 55/95 (57%)

Query:    30 KEELERSQATLATLSTSAELDRLQEKYDKTCADLR-RAQAELRVVQADNERVRSEEKT-M 87
             +E+ ER++A  A L    E +R++ + DK  AD R R +AE +    + ER  +EE+  M
Sbjct:   259 EEDKERAEAERARLEAE-ERERIKAEQDKKIADERARIEAEEKAAAQERERREAEERERM 317

Query:    88 QEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
             +E+ +++  E  R+K + +    E + +KEE +R+
Sbjct:   318 REEEKRAAEERQRIKEEEKRAAEERQRIKEEEKRA 352

GO:0017022 "myosin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0030478 "actin cap" evidence=IEA

GO:0030016 "myofibril" evidence=IEA

GO:0006928 "cellular component movement" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0005523 "tropomyosin binding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

MGI|MGI:2448587 Ccdc153 "coiled-coil domain containing 153" [Mus musculus (taxid:10090)]

 Score = 101 (40.6 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 31/99 (31%), Positives = 53/99 (53%)

Query:    25 EMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE 84
             E+ + +  L+R +A  A  S     DRL+++     A+L R Q+E + + A+  R R   
Sbjct:    39 ELLQDRLALQREEARRAKASE----DRLKQRLQGLEAELERTQSEGKAIYAEMSRQRQAL 94

Query:    85 KT-MQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
             K  +  + ++ + EV  LK +LE  Q E ++ KEE ER+
Sbjct:    95 KEELGTRSKQLEEEVRSLKEQLETCQREAKTAKEEAERA 133

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6QNZ5 MGC151537 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 36/111 (32%), Positives = 57/111 (51%)

Query:    14 RLLSE-RDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRV 72
             RL  E R+K   E  + KEELER +        + E  R +E+  +  A+L R Q E ++
Sbjct:   502 RLAREQREKEEREK-REKEELERQKREELAQKVAEERSRREEEARQLEAELAREQEE-QL 559

Query:    73 VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMES--MKEEYER 121
              + + ER R E + M E++ K + E  R++ + E  + E E    +EE ER
Sbjct:   560 RRQEEERARREREEM-ERIRKQKEEEARVREEAERVRQEREKHFQREEQER 609

GO:0060009 "Sertoli cell development" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007281 "germ cell development" evidence=IEA

GO:0006997 "nucleus organization" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IEA

GO:0006687 "glycosphingolipid metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

UNIPROTKB|I3LTF5 I3LTF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 107 (42.7 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 31/96 (32%), Positives = 50/96 (52%)

Query:    26 MDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEK 85
             + K  ++  R Q   A       L +LQE+ ++   +L R QAE R++Q + ER RS+ +
Sbjct:   320 LHKDLKQKRREQRRAAKEEEMLRLQQLQEEKERKLQELER-QAE-RLLQEEEERRRSQHR 377

Query:    86 TMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121
              +Q+ +E    E  + +A +   Q EME  KEE  R
Sbjct:   378 ELQQALEGQLREAEQARASM---QAEMELKKEEAAR 410

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	122
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	0.001

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 30  KEELERSQATLATL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKT 86
           K EL   +  L  L       EL+ LQE+  +   +L    AEL+ ++   E +R E   
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278

Query: 87  MQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122
           ++E++E+ Q E+Y L  ++   + + + ++E     
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANL 314

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 10  GTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAE 69
             L     E +    E+++ + +L  S  ++ T   S EL R +       A +   + +
Sbjct: 3   AQLENAQRENELLKKELERKQSKLGSSMNSIKTF-WSPELKRERALRKDEAARITVWKEQ 61

Query: 70  LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMES 114
           LRV Q +N+  +   + +QE++ KSQ E+ RL+ KLE +  E   
Sbjct: 62  LRVTQEENQHAQLTVQALQEEL-KSQRELNRLQQKLEKSGNETGE 105

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.02
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.73
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.58
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.37
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.36
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.33
KOG1962|consensus	216		96.25
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	96.22
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.14
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.08
PRK11637	428	AmiB activator; Provisional	96.0
PRK11637	428	AmiB activator; Provisional	95.77
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.38
COG4372	499	Uncharacterized protein conserved in bacteria with	95.14
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	94.57
KOG0996|consensus	1293		94.38
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.29
PRK09039	343	hypothetical protein; Validated	94.23
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	94.2
COG4372	499	Uncharacterized protein conserved in bacteria with	93.62
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.54
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.52
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	93.32
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	93.32
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.74
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.35
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	92.24
KOG1962|consensus	216		91.74
PRK09039	343	hypothetical protein; Validated	91.68
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.57
KOG0996|consensus	1293		91.51
PRK04863	1486	mukB cell division protein MukB; Provisional	91.46
KOG0250|consensus	1074		91.21
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.82
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.76
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.76
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	90.53
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.13
PRK10884	206	SH3 domain-containing protein; Provisional	89.95
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.81
PRK10884	206	SH3 domain-containing protein; Provisional	89.76
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	89.64
KOG0971|consensus	1243		89.59
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	89.47
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.45
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	89.45
PHA02562	562	46 endonuclease subunit; Provisional	88.74
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.55
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	88.52
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.45
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.33
PRK02224	880	chromosome segregation protein; Provisional	88.24
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	88.17
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.92
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	87.92
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	87.7
PRK03598	331	putative efflux pump membrane fusion protein; Prov	87.66
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.43
PRK04778	569	septation ring formation regulator EzrA; Provision	87.29
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.96
KOG0250|consensus	1074		86.79
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	86.23
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.23
PRK03918	880	chromosome segregation protein; Provisional	85.72
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	85.57
KOG3647|consensus	338		85.35
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	84.89
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	84.71
PF10186	302	Atg14: UV radiation resistance protein and autopha	84.63
PRK10476	346	multidrug resistance protein MdtN; Provisional	84.41
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	84.35
PHA02562	562	46 endonuclease subunit; Provisional	84.05
KOG0933|consensus	1174		84.01
COG4942	420	Membrane-bound metallopeptidase [Cell division and	83.4
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	83.29
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	83.13
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	83.02
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	82.44
KOG0978|consensus	698		82.41
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	82.24
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	82.21
COG4026	290	Uncharacterized protein containing TOPRIM domain,	82.2
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	82.19
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	82.11
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	81.85
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	81.82
PF00038	312	Filament: Intermediate filament protein; InterPro:	81.53
KOG0243|consensus	1041		81.35
COG4942	420	Membrane-bound metallopeptidase [Cell division and	81.14
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	81.11
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	80.92
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	80.8
PRK09859	385	multidrug efflux system protein MdtE; Provisional	80.69
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	80.37
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	80.31

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.02  E-value=2.6e-09  Score=98.25  Aligned_cols=102  Identities=33%  Similarity=0.484  Sum_probs=86.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2823          15 LLSERDKAVLEMDKSKEELERSQATLATLS------TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQ   88 (122)
Q Consensus        15 l~~E~eka~~e~ek~~eELErsQatl~~l~------tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ   88 (122)
                      |++.+.++..|+++|+.||+++++-++...      .+.|+++-+...+..++++.+++.++++++.++++++++++.||
T Consensus         1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq   80 (775)
T PF10174_consen    1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ   80 (775)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence            456778888888888888888888886532      46899999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823          89 EKVEKSQGEVYRLKAKLENTQGEMESMKE  117 (122)
Q Consensus        89 ~elEksQ~e~~rlq~elE~aQ~e~e~l~~  117 (122)
                      ++| ++|.+++||+.++++++++.+.+..
T Consensus        81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~  108 (775)
T PF10174_consen   81 EEL-RAQRELNRLQQELEKAQYEFESLQE  108 (775)
T ss_pred             HHH-HHhhHHHHHHHHhhhcccccchhhh
Confidence            999 9999999999987777666655444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.73  E-value=1.5e-07  Score=86.95  Aligned_cols=104  Identities=29%  Similarity=0.385  Sum_probs=63.4

Q ss_pred             CchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2823           8 PPGTLSRLLSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS   82 (122)
Q Consensus         8 ~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~   82 (122)
                      ++.++..++.+..++..+++.++++| |+|..+..|     .++.+.+.++. +|++.+.+.|++       +++|+++.
T Consensus        58 ~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~-------~E~er~~~  128 (775)
T PF10174_consen   58 LKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQ-------AERERLQR  128 (775)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHH-------HHHHHHHH
Confidence            44455555555555555566666666 655555433     23344444444 555555555554       44455555


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      ++..+++.++++|..+.+++..|+.+++++++|.+.|+
T Consensus       129 El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~  166 (775)
T PF10174_consen  129 ELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQ  166 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55557778888888888888888888888888877664

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.58  E-value=0.14  Score=45.38  Aligned_cols=112  Identities=25%  Similarity=0.378  Sum_probs=60.2

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy2823           9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQADNE-----   78 (122)
Q Consensus         9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e-----   78 (122)
                      ++.+.....|++.+...+++...|+...+.....|     ....++.+++++...+.+.+..+..++..++.+++     
T Consensus       280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~  359 (522)
T PF05701_consen  280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAE  359 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhh
Confidence            34466666667777777766666666666555433     23455555555555555544444444444444442     


Q ss_pred             --HhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          79 --RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        79 --~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                        ++.....-+...|.....+....+.+.+.++.++.+++.+++
T Consensus       360 e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e  403 (522)
T PF05701_consen  360 EEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAE  403 (522)
T ss_pred             hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              333334444455555555555555555555555555555544

Several sequences in this family are described as being myosin heavy chain-like.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.37  E-value=0.3  Score=37.22  Aligned_cols=92  Identities=26%  Similarity=0.365  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2823          10 GTLSRLLSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE   84 (122)
Q Consensus        10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~   84 (122)
                      +.+-|..++.+.+......+.-+|+.+|+....+     ++..++..+.+++....++++++..+|..+..+.+..-..+
T Consensus        10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466778888888888888889999888877443     67789999999999999999999999988888887766666


Q ss_pred             HHHHHH---HHhhHHHHHHH
Q psy2823          85 KTMQEK---VEKSQGEVYRL  101 (122)
Q Consensus        85 ~~lQ~e---lEksQ~e~~rl  101 (122)
                      +..+.+   |+.+.+.+.++
T Consensus        90 q~~q~kv~eLE~~~~~~~~~  109 (140)
T PF10473_consen   90 QKKQEKVSELESLNSSLENL  109 (140)
T ss_pred             HHHHHHHHHHHHHhHHHHHH
Confidence            655443   44444444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.36  E-value=0.28  Score=43.50  Aligned_cols=71  Identities=23%  Similarity=0.402  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE  117 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~  117 (122)
                      .||+.+...|+++..++..++...+-...++++...++.+++.+...+.+.+..|..++.++..+++.+..
T Consensus       288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~  358 (522)
T PF05701_consen  288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA  358 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence            45555555555555555555555666666666666666666666666666666666666666666655443

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.33  E-value=0.35  Score=43.96  Aligned_cols=17  Identities=12%  Similarity=0.263  Sum_probs=6.3

Q ss_pred             HHHHHhHHHHHHHHHHH
Q psy2823          17 SERDKAVLEMDKSKEEL   33 (122)
Q Consensus        17 ~E~eka~~e~ek~~eEL   33 (122)
                      .+.+.+..++..+...+
T Consensus       677 ~e~~~l~~~~~~l~~~l  693 (1179)
T TIGR02168       677 REIEELEEKIEELEEKI  693 (1179)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG1962|consensus

Probab=96.25  E-value=0.1  Score=42.53  Aligned_cols=63  Identities=30%  Similarity=0.368  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q psy2823          52 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMES  114 (122)
Q Consensus        52 lQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~  114 (122)
                      +.++.|+.-.++.++..+++..+.+++.++.+...+.+..+..+-+..||-++..+.|++++.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~  211 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES  211 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence            555666666666666666666667777777777778888888888888888888888877653

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=96.22  E-value=0.25  Score=36.43  Aligned_cols=73  Identities=22%  Similarity=0.380  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHH----hhHHHHHHHHHHH
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE----NTQGEMESMKEEY  119 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE----~aQ~e~e~l~~El  119 (122)
                      ..+.++.+++..+..++.-++......+..+.....-+....+++.+.++.+....+.+.    +---++++|++.|
T Consensus        73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566667777777777777777777777777777777777777777777776666655443    3344566666654

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.14  E-value=0.5  Score=42.97  Aligned_cols=27  Identities=7%  Similarity=0.128  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy2823          11 TLSRLLSERDKAVLEMDKSKEELERSQ   37 (122)
Q Consensus        11 ~~~rl~~E~eka~~e~ek~~eELErsQ   37 (122)
                      .+..+..+++.+...+..+..++....
T Consensus       678 e~~~l~~~~~~l~~~l~~~~~~~~~~~  704 (1179)
T TIGR02168       678 EIEELEEKIEELEEKIAELEKALAELR  704 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.08  E-value=0.27  Score=37.51  Aligned_cols=73  Identities=23%  Similarity=0.381  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      ++-|-+..++.....+|.-.+..++.+-.+.+.++..+..|.++++..=..+.+|..+|.+.-++.+.|-..+
T Consensus        17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   17 SEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666666666666666666666666777766666666666666666666655554444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK11637 AmiB activator; Provisional

Probab=96.00  E-value=0.36  Score=41.11  Aligned_cols=13  Identities=23%  Similarity=0.358  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHH
Q psy2823          55 KYDKTCADLRRAQ   67 (122)
Q Consensus        55 kldk~~~Elrr~Q   67 (122)
                      ++..+...+..++
T Consensus        83 qi~~~~~~i~~~~   95 (428)
T PRK11637         83 AISQASRKLRETQ   95 (428)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PRK11637 AmiB activator; Provisional

Probab=95.77  E-value=0.22  Score=42.42  Aligned_cols=66  Identities=6%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823          48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME  113 (122)
Q Consensus        48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e  113 (122)
                      ++..++.++..+..++..+..++..++..+.....++..++.++...+.++..++.+++..+..+.
T Consensus        62 ~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         62 SVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444444444444444444444444444444444444443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.38  E-value=1.2  Score=36.29  Aligned_cols=74  Identities=19%  Similarity=0.323  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK-VEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~e-lEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      ..++...+..+..+.+++..++.++......++.++.++..+... .......+..+..++..++..+..++..+
T Consensus       195 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l  269 (423)
T TIGR01843       195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRL  269 (423)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555555555555555444444444333322211 11222333444444455554444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.14  E-value=2  Score=38.66  Aligned_cols=94  Identities=23%  Similarity=0.340  Sum_probs=54.7

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2823           9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLAT-----LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSE   83 (122)
Q Consensus         9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~-----l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e   83 (122)
                      ++......+|++++-.|+++.++|-+-.+..+..     ++++.++-++++....++++|--.-++....-++.+.++.+
T Consensus        94 ~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~  173 (499)
T COG4372          94 QGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS  173 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556667777777777777777776666632     36777777777777777666655555555544555444444


Q ss_pred             HHHHHHHHHhhHHHHHHHH
Q psy2823          84 EKTMQEKVEKSQGEVYRLK  102 (122)
Q Consensus        84 ~~~lQ~elEksQ~e~~rlq  102 (122)
                      -..||--.+..-+++.+|.
T Consensus       174 ~k~LQ~s~~Qlk~~~~~L~  192 (499)
T COG4372         174 QKQLQASATQLKSQVLDLK  192 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444433333333333333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=94.57  E-value=1.5  Score=35.62  Aligned_cols=104  Identities=23%  Similarity=0.328  Sum_probs=58.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhH
Q psy2823          16 LSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQA-------DNERVRSE   83 (122)
Q Consensus        16 ~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~-------~~e~~q~e   83 (122)
                      -..+...+.++.+.+.+|.+++.+...|     .++.+-..|..+...+..+.+++......+..       .+......
T Consensus        11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~   90 (246)
T PF00769_consen   11 EERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE   90 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666777777777777666443     24445555555555555555555544333333       33444556


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          84 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        84 ~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      +.+|....+..-.++.+++.++..++......+.+|
T Consensus        91 i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L  126 (246)
T PF00769_consen   91 IARLEEESERKEEEAEELQEELEEAREDEEEAKEEL  126 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666777777777777777666666554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0996|consensus

Probab=94.38  E-value=2.2  Score=42.42  Aligned_cols=113  Identities=17%  Similarity=0.245  Sum_probs=72.0

Q ss_pred             CCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy2823           7 PPPGTLSRLLSERDKAVLEMDKSKEELERSQATLAT--LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNER-----   79 (122)
Q Consensus         7 ~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~--l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~-----   79 (122)
                      .+...++.+++|.+++...+++.+.+|+.-+..|..  ..-..+++++++++-..-..+-.+..++.+.+++++=     
T Consensus       437 ~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~  516 (1293)
T KOG0996|consen  437 KARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRH  516 (1293)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777777777777777777777777776632  3345678888888877777777777777777777743     


Q ss_pred             --hhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          80 --VRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        80 --~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                        ....++.++..|..+.......++.+...-.++.+++.|+
T Consensus       517 ~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~  558 (1293)
T KOG0996|consen  517 ETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQEL  558 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence              3334455555555555555555555555555555544443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.29  E-value=2.5  Score=34.52  Aligned_cols=17  Identities=18%  Similarity=0.108  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHhHHHHHH
Q psy2823          12 LSRLLSERDKAVLEMDK   28 (122)
Q Consensus        12 ~~rl~~E~eka~~e~ek   28 (122)
                      +..+.....++..++.+
T Consensus        83 l~~l~~~~~~l~a~~~~   99 (423)
T TIGR01843        83 AAELESQVLRLEAEVAR   99 (423)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444433333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK09039 hypothetical protein; Validated

Probab=94.23  E-value=3  Score=35.30  Aligned_cols=49  Identities=14%  Similarity=0.222  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHH
Q psy2823          49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGE   97 (122)
Q Consensus        49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e   97 (122)
                      +..++.+|+...+....++.+....+.+.+..+.++..++..++.+...
T Consensus       118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~  166 (343)
T PRK09039        118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR  166 (343)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444443333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=94.20  E-value=2.5  Score=34.26  Aligned_cols=59  Identities=19%  Similarity=0.339  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2823          22 AVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE   89 (122)
Q Consensus        22 a~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~   89 (122)
                      +...+.+++++..+++         .+|.+.++.++.....+++++.+..........+.....+|..
T Consensus        10 le~rL~q~eee~~~a~---------~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~   68 (246)
T PF00769_consen   10 LEERLRQMEEEMRRAQ---------EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE   68 (246)
T ss_dssp             HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555556666555         4555555555555555555555544444443333333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.62  E-value=4.6  Score=36.40  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823          46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ  109 (122)
Q Consensus        46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ  109 (122)
                      -.|-+.++++++.+--++-++|-++.++..+..+.++.+..+-++.-++-.+++-|...-...|
T Consensus       115 r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         115 RQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555555555555555555544554444444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=93.54  E-value=3.9  Score=35.04  Aligned_cols=102  Identities=21%  Similarity=0.250  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          11 TLSRLLSERDKAVLEMDKSKEELERSQATLATL------------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNE   78 (122)
Q Consensus        11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~~l------------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e   78 (122)
                      -|+-|-+-+||+.-|..+-+..||-..|.|...            ....|...+=+-++....--.+..-+|..--..+-
T Consensus        19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~   98 (307)
T PF10481_consen   19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN   98 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence            467788888999999999999999999998432            23457777778788777777777777777666666


Q ss_pred             HhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHH
Q psy2823          79 RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM  112 (122)
Q Consensus        79 ~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~  112 (122)
                      -.-|++....+.+++...++.|++.+||++|...
T Consensus        99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~  132 (307)
T PF10481_consen   99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA  132 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6778888899999999999999999999998654

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.52  E-value=2.4  Score=31.85  Aligned_cols=18  Identities=22%  Similarity=0.381  Sum_probs=7.0

Q ss_pred             HHHHhHHHHHHHHHHHHH
Q psy2823          18 ERDKAVLEMDKSKEELER   35 (122)
Q Consensus        18 E~eka~~e~ek~~eELEr   35 (122)
                      +...+...+..+.+++..
T Consensus        82 e~~~~~~~l~~l~~el~~   99 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQ   99 (191)
T ss_pred             hHHhHHHHHHHHHHHHHH
Confidence            333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=93.32  E-value=3.6  Score=33.13  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=20.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          44 STSAELDRLQEKYDKTCADLRRAQAELR   71 (122)
Q Consensus        44 ~tq~EldrlQekldk~~~Elrr~Q~ele   71 (122)
                      -+..++|..+..+..+..++..++..+.
T Consensus       132 iS~~~~d~~~~~~~~a~~~l~~~~~~~~  159 (327)
T TIGR02971       132 VSASDLDSKALKLRTAEEELEEALASRS  159 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888888788777777777776654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=93.32  E-value=1  Score=37.64  Aligned_cols=74  Identities=18%  Similarity=0.259  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      ..+...+.++.+....|..++.+.+....+..+...+....+.+++.+..-+.-|.++..++......+...+.
T Consensus       235 ~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~  308 (344)
T PF12777_consen  235 EQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK  308 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence            33444444444444444444444444445555556666667777888888888888888888877777766543

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.74  E-value=5.1  Score=33.35  Aligned_cols=56  Identities=16%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHH
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLK  102 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq  102 (122)
                      .+|..+..++.....++...+.++...+.++......++.+..+....+.++..+.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444434444444444333333333333333333333333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.35  E-value=5.7  Score=33.04  Aligned_cols=56  Identities=18%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823          61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK  116 (122)
Q Consensus        61 ~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~  116 (122)
                      .+|..++.+|.....+++.-+..+..++.++......+..+..+......++..+.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666655655555555555555555555555555555555555544444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=92.24  E-value=10  Score=36.71  Aligned_cols=31  Identities=23%  Similarity=0.436  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823          10 GTLSRLLSERDKAVLEMDKSKEELERSQATL   40 (122)
Q Consensus        10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl   40 (122)
                      +||...+.+++++...++++.+-|++...-+
T Consensus       165 aGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~  195 (1163)
T COG1196         165 AGVSKYKERKEEAERKLERTEENLERLEDLL  195 (1163)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777888888888888877777766444

>KOG1962|consensus

Probab=91.74  E-value=1.5  Score=35.83  Aligned_cols=61  Identities=20%  Similarity=0.369  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy2823          46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE  106 (122)
Q Consensus        46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE  106 (122)
                      ..+.+.+-+++++..+++++.+.+|+..+.+.+....+++.++.+++..=.+-.+|+...+
T Consensus       150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            3556666666666666666666666666666666666666666666666666666666554

>PRK09039 hypothetical protein; Validated

Probab=91.68  E-value=7.5  Score=32.93  Aligned_cols=69  Identities=6%  Similarity=0.104  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          52 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        52 lQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      ++.++.....+|..........+.+..+.+.+++.|...+..++..+.-+.......+..++.+..+|+
T Consensus       114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~  182 (343)
T PRK09039        114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN  182 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555555555555666666666666666666666555556666666655554

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.57  E-value=7.6  Score=32.78  Aligned_cols=74  Identities=24%  Similarity=0.358  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH----HHHHHHHHH
Q psy2823          45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ----GEMESMKEE  118 (122)
Q Consensus        45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ----~e~e~l~~E  118 (122)
                      -+++++++.+++...-.++.....++...+.++..+.+.++....+....++++..+...++...    .|+.+|+..
T Consensus       202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~  279 (312)
T smart00787      202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQ  279 (312)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34566677777777666666666666666666666666666666666666665555555554433    344444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0996|consensus

Probab=91.51  E-value=5.7  Score=39.71  Aligned_cols=110  Identities=15%  Similarity=0.323  Sum_probs=70.4

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2823           9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLATL------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS   82 (122)
Q Consensus         9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~   82 (122)
                      +..|+.+..|.+.+...--+ +...+..|..+..+      .-.+.++.+.+++++..+++++..+-.........+++.
T Consensus       864 ~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~  942 (1293)
T KOG0996|consen  864 EEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQK  942 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHH
Confidence            45566666666666644444 56666666666332      234688999999999999999888777777666677666


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      -+..+-.+.+.+-+++.-|..++...-.-...+..+|
T Consensus       943 ~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~  979 (1293)
T KOG0996|consen  943 KLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEY  979 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            6666666666666655555555444444333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.46  E-value=9.6  Score=38.54  Aligned_cols=51  Identities=24%  Similarity=0.279  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823          59 TCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ  109 (122)
Q Consensus        59 ~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ  109 (122)
                      ....+..+...++.....+.....++..+..+++.+..++..++.++...+
T Consensus       353 l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelq  403 (1486)
T PRK04863        353 YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQ  403 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333

>KOG0250|consensus

Probab=91.21  E-value=11  Score=37.19  Aligned_cols=75  Identities=13%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          45 TSAELDRLQEKYDKTCADLRRAQAEL-RVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        45 tq~EldrlQekldk~~~Elrr~Q~el-e~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      ..+.++++....|...-.+--.+++. ..+..+++.....+..|..+.+++++.+.+|..++..+..+.....++.
T Consensus       363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~  438 (1074)
T KOG0250|consen  363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK  438 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            44666666666666666666666666 6667777777777888888888888888888888877777777766665

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.82  E-value=8.3  Score=31.84  Aligned_cols=14  Identities=29%  Similarity=0.366  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHhhHH
Q psy2823          83 EEKTMQEKVEKSQG   96 (122)
Q Consensus        83 e~~~lQ~elEksQ~   96 (122)
                      ++..+.++.++.+.
T Consensus       111 el~~l~~~~~~l~~  124 (239)
T COG1579         111 ELAELMEEIEKLEK  124 (239)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.76  E-value=13  Score=34.12  Aligned_cols=25  Identities=36%  Similarity=0.527  Sum_probs=11.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823          16 LSERDKAVLEMDKSKEELERSQATL   40 (122)
Q Consensus        16 ~~E~eka~~e~ek~~eELErsQatl   40 (122)
                      ......+..++..++.++++.++.|
T Consensus       156 ~~~~~~Le~e~~~l~~~v~~l~~eL  180 (546)
T PF07888_consen  156 LKENEQLEEEVEQLREEVERLEAEL  180 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444455555555544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.76  E-value=3.5  Score=34.61  Aligned_cols=56  Identities=16%  Similarity=0.353  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823          54 EKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ  109 (122)
Q Consensus        54 ekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ  109 (122)
                      .++..+..++.-+|.+++..+.+.+.+++...-++++.++++.++.+|+.+.+..-
T Consensus        38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~   93 (265)
T COG3883          38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK   93 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333344444333333344444444444444444444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=90.53  E-value=18  Score=35.28  Aligned_cols=103  Identities=18%  Similarity=0.370  Sum_probs=47.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHH
Q psy2823          14 RLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKT-MQEKVE   92 (122)
Q Consensus        14 rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~-lQ~elE   92 (122)
                      .|..++..+...+.......+.....+...  ...++.+...+.++..++..++.++...+.+..+......+ +.+...
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  681 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQI--NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE  681 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666655555555444444322  23444444444444444444444444444444433332222 222233


Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823          93 KSQGEVYRLKAKLENTQGEMESMKEE  118 (122)
Q Consensus        93 ksQ~e~~rlq~elE~aQ~e~e~l~~E  118 (122)
                      .++..+..+...+..+..+.+.+..+
T Consensus       682 ~~~~~l~~l~~~l~~~~~e~~~~~~~  707 (1201)
T PF12128_consen  682 QIEEQLNELEEELKQLKQELEELLEE  707 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555444444443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.13  E-value=15  Score=33.76  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=16.4

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q psy2823           9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLA   41 (122)
Q Consensus         9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~   41 (122)
                      |+.++....|++.+...+..+..+.+..+..+.
T Consensus       142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~  174 (546)
T PF07888_consen  142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVE  174 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555544443333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.95  E-value=8.7  Score=30.70  Aligned_cols=29  Identities=17%  Similarity=0.330  Sum_probs=14.8

Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823          81 RSEEKTMQEKVEKSQGEVYRLKAKLENTQ  109 (122)
Q Consensus        81 q~e~~~lQ~elEksQ~e~~rlq~elE~aQ  109 (122)
                      ..++.+|.+++..++.++.-+..+++..+
T Consensus       138 ~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884        138 KEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555554444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.81  E-value=6.7  Score=32.94  Aligned_cols=60  Identities=22%  Similarity=0.320  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q psy2823          56 YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM  115 (122)
Q Consensus        56 ldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l  115 (122)
                      ..+...++--++.+....|.+++....++..++.+....+.++.+++.+++.++.++..+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~   92 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL   92 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444433333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.76  E-value=5.9  Score=31.64  Aligned_cols=20  Identities=5%  Similarity=0.039  Sum_probs=9.1

Q ss_pred             HHHHhHHHHHHHHHHHHHhH
Q psy2823          18 ERDKAVLEMDKSKEELERSQ   37 (122)
Q Consensus        18 E~eka~~e~ek~~eELErsQ   37 (122)
                      .+.+++.++..++.+|....
T Consensus        94 rlp~le~el~~l~~~l~~~~  113 (206)
T PRK10884         94 RVPDLENQVKTLTDKLNNID  113 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=89.64  E-value=16  Score=36.23  Aligned_cols=52  Identities=23%  Similarity=0.382  Sum_probs=30.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhH
Q psy2823          44 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ   95 (122)
Q Consensus        44 ~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ   95 (122)
                      .....++.+.+++..+..++..++.++...+..++....+.+.++.+++..+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~  324 (1353)
T TIGR02680       273 SAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ  324 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455666666666666666666666666666655555555555555554444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0971|consensus

Probab=89.59  E-value=10  Score=37.49  Aligned_cols=64  Identities=27%  Similarity=0.321  Sum_probs=45.4

Q ss_pred             CchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH--h----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823           8 PPGTLSRLLSERDKAVLEMDKSKEELERSQATLA--T----------LSTSAELDRLQEKYDKTCADLRRAQAELR   71 (122)
Q Consensus         8 ~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~--~----------l~tq~EldrlQekldk~~~Elrr~Q~ele   71 (122)
                      .|-++.|-+-|...|+.=-++.+.||.-.+-+..  +          .+.|.|+.-++|+.|-..++|+-+.+|.+
T Consensus       281 Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme  356 (1243)
T KOG0971|consen  281 LQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME  356 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666666666677777766665442  2          15788999999999999999998887743

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=89.47  E-value=1.8  Score=36.29  Aligned_cols=70  Identities=19%  Similarity=0.273  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823          49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE  118 (122)
Q Consensus        49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~E  118 (122)
                      +..++..++.+...|...+.++......+...+.+.+....+....+.++...+.+++++..-+..|..|
T Consensus       223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E  292 (344)
T PF12777_consen  223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE  292 (344)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence            3333333333333333333333333333333333333333333333344444444444444444444333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.45  E-value=20  Score=35.04  Aligned_cols=59  Identities=17%  Similarity=0.365  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        61 ~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      ..+..++............++.+...++.+.+++...+..+..++...+.....+..-|
T Consensus       476 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  476 KRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333333333333333444444444555555555555555555555555555554443

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=89.45  E-value=8.4  Score=30.24  Aligned_cols=68  Identities=16%  Similarity=0.334  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      ..++++..+.++...+++.+......      -+..+++.++.++++++..+.....++..+=..+..+...++
T Consensus       121 ~~l~KaK~~Y~~~c~~~e~~~~~~~~------~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~  188 (236)
T cd07651         121 KYLEKAREKYEADCSKINSYTLQSQL------TWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN  188 (236)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHcc------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555444322111      011355667788888888888888888777777777666554

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>PHA02562 46 endonuclease subunit; Provisional

Probab=88.74  E-value=15  Score=31.70  Aligned_cols=104  Identities=10%  Similarity=0.190  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2823          10 GTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE   89 (122)
Q Consensus        10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~   89 (122)
                      ..+..|...+..+..++..+...+...+.      ...+...+..++......+......+......+..+++++..|..
T Consensus       299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~------~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~  372 (562)
T PHA02562        299 DRITKIKDKLKELQHSLEKLDTAIDELEE------IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA  372 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444444444444433332221      112344444444444444444444444444444555555555555


Q ss_pred             HHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          90 KVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        90 elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      .....-.++.++..+++....+...+..+.
T Consensus       373 ~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~  402 (562)
T PHA02562        373 EFVDNAEELAKLQDELDKIVKTKSELVKEK  402 (562)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666666666666666655555443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.55  E-value=11  Score=30.01  Aligned_cols=62  Identities=10%  Similarity=0.272  Sum_probs=37.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          44 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL  105 (122)
Q Consensus        44 ~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~el  105 (122)
                      .+|..+++..++-.....+++.+..+++.....+++....+...+.++...+..+..+..-.
T Consensus        39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~  100 (251)
T PF11932_consen   39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR  100 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777777777777777666666666655555555555555554444444333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=88.52  E-value=18  Score=35.95  Aligned_cols=60  Identities=13%  Similarity=0.216  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823          54 EKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME  113 (122)
Q Consensus        54 ekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e  113 (122)
                      ++++.....++.....+..........+.....+..+++.....++.....++.+..++.
T Consensus       333 ~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~  392 (1353)
T TIGR02680       333 EELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLA  392 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444555555555555555555555544444444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.45  E-value=12  Score=31.29  Aligned_cols=17  Identities=24%  Similarity=0.198  Sum_probs=0.0

Q ss_pred             HHHHHHHHhHHHHHHHH
Q psy2823          14 RLLSERDKAVLEMDKSK   30 (122)
Q Consensus        14 rl~~E~eka~~e~ek~~   30 (122)
                      .+..+.+.+..|.+...
T Consensus        13 ~l~~~~~~~~~E~~~Y~   29 (314)
T PF04111_consen   13 QLDKQLEQAEKERDTYQ   29 (314)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333344443333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.33  E-value=8.2  Score=28.32  Aligned_cols=42  Identities=12%  Similarity=0.299  Sum_probs=19.7

Q ss_pred             HHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823          75 ADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK  116 (122)
Q Consensus        75 ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~  116 (122)
                      ..+..++.....+..++.....-+...++++.+.+.-+..+.
T Consensus        87 re~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~  128 (151)
T PF11559_consen   87 RELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK  128 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444555555555555555555544444444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK02224 chromosome segregation protein; Provisional

Probab=88.24  E-value=21  Score=32.83  Aligned_cols=17  Identities=24%  Similarity=0.358  Sum_probs=6.9

Q ss_pred             HHHHHHhhHHHHHHHHH
Q psy2823         101 LKAKLENTQGEMESMKE  117 (122)
Q Consensus       101 lq~elE~aQ~e~e~l~~  117 (122)
                      +...++.++.+++.+..
T Consensus       410 ~e~~l~~l~~~~~~l~~  426 (880)
T PRK02224        410 AEDFLEELREERDELRE  426 (880)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            33334444444444443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=88.17  E-value=16  Score=31.36  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-------h---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          11 TLSRLLSERDKAVLEMDKSKEELERSQATLAT-------L---------STSAELDRLQEKYDKTCADLRRAQAELRVVQ   74 (122)
Q Consensus        11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~~-------l---------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ   74 (122)
                      .+.-|+..+.-++.||.+|+.|.-+..+.-.+       |         .+..++..+.+.|.+-.-+..+-|.+.....
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll  240 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL  240 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888888889999999887776643311       1         3556677777777776666666666666666


Q ss_pred             HHHHHhhh
Q psy2823          75 ADNERVRS   82 (122)
Q Consensus        75 ~~~e~~q~   82 (122)
                      +++-..+.
T Consensus       241 sqivdlQ~  248 (306)
T PF04849_consen  241 SQIVDLQQ  248 (306)
T ss_pred             HHHHHHHH
Confidence            55544333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.92  E-value=11  Score=29.12  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=23.4

Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823          81 RSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK  116 (122)
Q Consensus        81 q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~  116 (122)
                      ..-++.+++++...+.++--+.+++.+.+.|-..|=
T Consensus       143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv  178 (194)
T PF08614_consen  143 NKANEILQDELQALQLQLNMLEEKLRKLEEENRELV  178 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455777777777777777777777776655543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=87.92  E-value=4.9  Score=33.82  Aligned_cols=66  Identities=17%  Similarity=0.158  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          12 LSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADN   77 (122)
Q Consensus        12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~   77 (122)
                      +....+.+.+|.++++..+.+++|.+.=+.. .-++.++|.++..++.+.+.+..+++.++..+..+
T Consensus       105 l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l  171 (397)
T PRK15030        105 YDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINL  171 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444555555555555555554422221 24566777777666666666666665555544333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=87.70  E-value=12  Score=29.55  Aligned_cols=86  Identities=20%  Similarity=0.342  Sum_probs=54.5

Q ss_pred             HHHhHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------HHHhhHHHHHHHH
Q psy2823          33 LERSQATLATL--STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE--------KVEKSQGEVYRLK  102 (122)
Q Consensus        33 LErsQatl~~l--~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~--------elEksQ~e~~rlq  102 (122)
                      +|.+++.|..+  .-..|+.-+.+++-++....+.+...+..+..++-++...+.+|..        +.++.+..+..+.
T Consensus        52 ~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~  131 (194)
T PF15619_consen   52 YEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLE  131 (194)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence            34445555443  3346788888888888887777777777777777777766666655        3455566666666


Q ss_pred             HHHHhhHHHHHHHHHH
Q psy2823         103 AKLENTQGEMESMKEE  118 (122)
Q Consensus       103 ~elE~aQ~e~e~l~~E  118 (122)
                      .+++..-..+..|...
T Consensus       132 ~~l~~~~~ki~~Lek~  147 (194)
T PF15619_consen  132 QKLQEKEKKIQELEKQ  147 (194)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666555555554443

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=87.66  E-value=14  Score=30.06  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=10.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q psy2823          45 TSAELDRLQEKYDKTCADLRRAQ   67 (122)
Q Consensus        45 tq~EldrlQekldk~~~Elrr~Q   67 (122)
                      +..++|..+-.++.+...+..++
T Consensus       143 s~~~~~~~~~~~~~a~~~~~~a~  165 (331)
T PRK03598        143 SANDLENARSSRDQAQATLKSAQ  165 (331)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.43  E-value=4.7  Score=34.02  Aligned_cols=63  Identities=29%  Similarity=0.444  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHH
Q psy2823          49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGE  111 (122)
Q Consensus        49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e  111 (122)
                      ++-+|..-.-.--++.+.+++.+..|..+.+...++.+|-+++.+.-+++++|.++.+..-..
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            444444444455566666777777777777777788888888888888888888877665443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=87.29  E-value=11  Score=33.77  Aligned_cols=31  Identities=19%  Similarity=0.178  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823          10 GTLSRLLSERDKAVLEMDKSKEELERSQATL   40 (122)
Q Consensus        10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl   40 (122)
                      ....++..-+..+...+..+..|+++.+.++
T Consensus       310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY  340 (569)
T PRK04778        310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSY  340 (569)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3445666667777777778888888877765

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.96  E-value=11  Score=28.29  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          50 DRLQEKYDKTCADLRRAQAELRV   72 (122)
Q Consensus        50 drlQekldk~~~Elrr~Q~ele~   72 (122)
                      ....++++........+..+...
T Consensus       126 ~~~~~~l~~l~~~~~~~~~e~~~  148 (191)
T PF04156_consen  126 KSVEERLDSLDESIKELEKEIRE  148 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0250|consensus

Probab=86.79  E-value=17  Score=35.90  Aligned_cols=71  Identities=21%  Similarity=0.455  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823          46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK  116 (122)
Q Consensus        46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~  116 (122)
                      ..+++....++.....++.+++..+.......+.+..++...+++++...+.+-.+..+.++-+.++..|+
T Consensus       393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk  463 (1074)
T KOG0250|consen  393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK  463 (1074)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677777777777777776666666666777777777777788888888888888888887777665

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=86.23  E-value=18  Score=29.92  Aligned_cols=27  Identities=22%  Similarity=0.427  Sum_probs=10.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823          87 MQEKVEKSQGEVYRLKAKLENTQGEME  113 (122)
Q Consensus        87 lQ~elEksQ~e~~rlq~elE~aQ~e~e  113 (122)
                      +.++...+-.++.++..++++.+.++.
T Consensus       101 ak~r~~~le~el~~l~~~~~~l~~~i~  127 (239)
T COG1579         101 AKERINSLEDELAELMEEIEKLEKEIE  127 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.23  E-value=8.4  Score=26.21  Aligned_cols=67  Identities=22%  Similarity=0.275  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      ..+++|..+..++.--+.-++.+.+.....+..       +.++.+....+..+|+.+...+++-+..+=..++
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~-------L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNE-------LKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            357778888888888887777666665555444       5666666667777777888888877777666554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK03918 chromosome segregation protein; Provisional

Probab=85.72  E-value=28  Score=31.78  Aligned_cols=16  Identities=19%  Similarity=0.300  Sum_probs=5.9

Q ss_pred             HhHHHHHHHHHHHHHh
Q psy2823          21 KAVLEMDKSKEELERS   36 (122)
Q Consensus        21 ka~~e~ek~~eELErs   36 (122)
                      .+..++..+..+++..
T Consensus       204 ~l~~ei~~l~~e~~~l  219 (880)
T PRK03918        204 EVLREINEISSELPEL  219 (880)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=85.57  E-value=27  Score=31.52  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=29.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHhHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy2823          17 SERDKAVLEMDKSKEELERSQATLATLST-------SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTM   87 (122)
Q Consensus        17 ~E~eka~~e~ek~~eELErsQatl~~l~t-------q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~l   87 (122)
                      ....++..++..+.+++......+.....       ..++..+..+++++..++.....++.....+.+....++.++
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  468 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK  468 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444432222       233444444444444444444444444444444433333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG3647|consensus

Probab=85.35  E-value=9.7  Score=32.90  Aligned_cols=63  Identities=19%  Similarity=0.260  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823          55 KYDKTCADLRRAQAELRVVQADN-------ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE  117 (122)
Q Consensus        55 kldk~~~Elrr~Q~ele~tQ~~~-------e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~  117 (122)
                      .....+.+++.+...|.++.++.       ++-..+++++++.|++.|+--=..=+++|.+..+++++=+
T Consensus       113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~  182 (338)
T KOG3647|consen  113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQ  182 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555554443       3444556666666666666555555666666666665543

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=84.89  E-value=19  Score=29.03  Aligned_cols=74  Identities=23%  Similarity=0.395  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      ..+++...+.++...+...++........+..-+..+++.++.++.++...+.....++.++=..+..++..|+
T Consensus       133 ~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~  206 (258)
T cd07655         133 KKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYM  206 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            34555555555555555555544444333333334566677777777777777777777777555555554443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.71  E-value=22  Score=29.77  Aligned_cols=21  Identities=24%  Similarity=0.115  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHhHHHHHHH
Q psy2823           9 PGTLSRLLSERDKAVLEMDKS   29 (122)
Q Consensus         9 Q~~~~rl~~E~eka~~e~ek~   29 (122)
                      +..+.....|++.-..=+.++
T Consensus        15 ~~~~~~~~~E~~~Y~~fL~~l   35 (314)
T PF04111_consen   15 DKQLEQAEKERDTYQEFLKKL   35 (314)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444433333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=84.63  E-value=17  Score=28.35  Aligned_cols=82  Identities=16%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhHH-----HH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2823          11 TLSRLLSERDKAVLEMDKSKEELERSQA-----TL-ATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE   84 (122)
Q Consensus        11 ~~~rl~~E~eka~~e~ek~~eELErsQa-----tl-~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~   84 (122)
                      .+..++.++..+..+++.++..++..=.     .. .......++...+.++......+.+....++..+..++..+..+
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777777777776666433     11 11223345555555555555555555555555444444444444


Q ss_pred             HHHHHHHH
Q psy2823          85 KTMQEKVE   92 (122)
Q Consensus        85 ~~lQ~elE   92 (122)
                      ......+.
T Consensus       101 ~~~~~~l~  108 (302)
T PF10186_consen  101 EQRRSRLS  108 (302)
T ss_pred             HHHHHHHH
Confidence            44443333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=84.41  E-value=21  Score=29.21  Aligned_cols=16  Identities=6%  Similarity=0.009  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHhHHHHH
Q psy2823          12 LSRLLSERDKAVLEMD   27 (122)
Q Consensus        12 ~~rl~~E~eka~~e~e   27 (122)
                      +..+.+++..+...++
T Consensus        88 l~~a~a~l~~a~a~l~  103 (346)
T PRK10476         88 VAQAQADLALADAQIM  103 (346)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444443333

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=84.35  E-value=18  Score=28.29  Aligned_cols=7  Identities=29%  Similarity=0.615  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q psy2823          12 LSRLLSE   18 (122)
Q Consensus        12 ~~rl~~E   18 (122)
                      |.-+.++
T Consensus        67 w~~i~~e   73 (251)
T cd07653          67 FRSILNE   73 (251)
T ss_pred             HHHHHHH
Confidence            3333333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PHA02562 46 endonuclease subunit; Provisional

Probab=84.05  E-value=27  Score=30.11  Aligned_cols=63  Identities=19%  Similarity=0.286  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHH
Q psy2823          48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQG  110 (122)
Q Consensus        48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~  110 (122)
                      .++.+++.++....+......++...+..+.....+..-+.+.+.+++..+..+..+++..+.
T Consensus       214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~  276 (562)
T PHA02562        214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQK  276 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555554554444433333333344444444444444433333

>KOG0933|consensus

Probab=84.01  E-value=49  Score=33.11  Aligned_cols=73  Identities=12%  Similarity=0.282  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      .++..-..+++..-+..+.+.|.+....+.....+++..+-+..+..-+++..+.+++.+++.+....+.++.
T Consensus       802 ~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~  874 (1174)
T KOG0933|consen  802 RAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELK  874 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence            3444444455555566666666666666777777777777777777778888888888888888777777663

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=83.40  E-value=33  Score=30.67  Aligned_cols=51  Identities=20%  Similarity=0.147  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        70 le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      |..++.++-.+...++.=++++....++..-=+.++.....|..++...|+
T Consensus       166 l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~  216 (420)
T COG4942         166 LKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN  216 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455554555555555555555555555555555555555555555443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=83.29  E-value=23  Score=28.74  Aligned_cols=114  Identities=21%  Similarity=0.294  Sum_probs=62.9

Q ss_pred             CCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-------------------hhhHHHHHHHHHHHHHHHHHHHHH
Q psy2823           7 PPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATL-------------------STSAELDRLQEKYDKTCADLRRAQ   67 (122)
Q Consensus         7 ~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-------------------~tq~EldrlQekldk~~~Elrr~Q   67 (122)
                      .+|++|..=-+|.-.+.+.+--++..+..+...+..+                   ...++.+-+.+++.+...++..++
T Consensus        21 e~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr  100 (202)
T PF06818_consen   21 ESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR  100 (202)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence            3566666666666666666666666666665555322                   122455556667777777777777


Q ss_pred             HHHHHH-----------HHHHHHh-----hhHHHHHHHHHHhhHHHHHHHHHHHH----hhHHHHHHHHHHHh
Q psy2823          68 AELRVV-----------QADNERV-----RSEEKTMQEKVEKSQGEVYRLKAKLE----NTQGEMESMKEEYE  120 (122)
Q Consensus        68 ~ele~t-----------Q~~~e~~-----q~e~~~lQ~elEksQ~e~~rlq~elE----~aQ~e~e~l~~ElE  120 (122)
                      ..+...           ..+-.++     .+....|..++|....++.......+    +|..|.-.-++|-|
T Consensus       101 ~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe  173 (202)
T PF06818_consen  101 EELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE  173 (202)
T ss_pred             HHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            666554           1121222     12345566666666666665555554    44444444444443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=83.13  E-value=11  Score=31.32  Aligned_cols=63  Identities=14%  Similarity=0.043  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          12 LSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRVVQ   74 (122)
Q Consensus        12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ   74 (122)
                      +....+.+.+|+..+...+.+++|.+.=+.. .-++.++|..+..++.+.+.+..+++.+...+
T Consensus       103 ~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~  166 (385)
T PRK09578        103 RDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQAKAAVASAKAELARAQ  166 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555556665543321 23556666666555555555555554444433

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=83.02  E-value=36  Score=30.80  Aligned_cols=11  Identities=27%  Similarity=0.444  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q psy2823          47 AELDRLQEKYD   57 (122)
Q Consensus        47 ~EldrlQekld   57 (122)
                      .+++.+..++.
T Consensus       405 ~el~~l~~~l~  415 (650)
T TIGR03185       405 EELAEVDKKIS  415 (650)
T ss_pred             HHHHHHHHHHh
Confidence            34444444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=82.44  E-value=12  Score=25.12  Aligned_cols=58  Identities=16%  Similarity=0.191  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy2823          49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE  106 (122)
Q Consensus        49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE  106 (122)
                      +--||+++|.+...+...+.++-....+++.+-+.+.-.-.+..+...++..|+++++
T Consensus         7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~   64 (69)
T PF14197_consen    7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE   64 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444445544444443333444444444444444443

>KOG0978|consensus

Probab=82.41  E-value=46  Score=31.61  Aligned_cols=43  Identities=23%  Similarity=0.261  Sum_probs=17.7

Q ss_pred             HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          78 ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        78 e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      +++.+.+++++..+-.+-.++.-+.-++.+++++.+.++..|+
T Consensus       576 ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle  618 (698)
T KOG0978|consen  576 EKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE  618 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333334444444444444444444444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.24  E-value=23  Score=28.09  Aligned_cols=64  Identities=17%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          56 YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        56 ldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      -+.....++.+...+..+-.-.+.+-.....|+..++....++...+.++.+++.+++.+=.+|
T Consensus       171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344444444444433444444445555666666666666666666666666666554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=82.21  E-value=15  Score=30.95  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=9.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhH
Q psy2823          87 MQEKVEKSQGEVYRLKAKLENTQ  109 (122)
Q Consensus        87 lQ~elEksQ~e~~rlq~elE~aQ  109 (122)
                      .+..+..++..+...+..++.++
T Consensus       146 a~~~~~~a~a~~~~a~a~l~~a~  168 (397)
T PRK15030        146 ALADAQQANAAVTAAKAAVETAR  168 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444443

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=82.20  E-value=30  Score=29.34  Aligned_cols=94  Identities=26%  Similarity=0.372  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhH--HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHH
Q psy2823          27 DKSKEELERSQ--ATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAK  104 (122)
Q Consensus        27 ek~~eELErsQ--atl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~e  104 (122)
                      +=.+.||.++=  |-|.+|+-=.++--+-+.+.-.-.-|.-.+++-+..-.+++..+++.+..+++++..-.+..+|-.+
T Consensus       106 elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~  185 (290)
T COG4026         106 ELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM  185 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555543  2233343223333444444445555555666666666677777777777999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHh
Q psy2823         105 LENTQGEMESMKEEYE  120 (122)
Q Consensus       105 lE~aQ~e~e~l~~ElE  120 (122)
                      +.+.-++...|+..++
T Consensus       186 ~~~l~~ev~~L~~r~~  201 (290)
T COG4026         186 LKKLPGEVYDLKKRWD  201 (290)
T ss_pred             HHhchhHHHHHHHHHH
Confidence            9999989888888765

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.19  E-value=19  Score=27.03  Aligned_cols=10  Identities=20%  Similarity=0.328  Sum_probs=3.6

Q ss_pred             hHHHHHHHHH
Q psy2823         108 TQGEMESMKE  117 (122)
Q Consensus       108 aQ~e~e~l~~  117 (122)
                      +...++.+..
T Consensus       127 ~E~k~eel~~  136 (143)
T PF12718_consen  127 WEEKYEELEE  136 (143)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=82.11  E-value=13  Score=31.70  Aligned_cols=63  Identities=21%  Similarity=0.237  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          10 GTLSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRV   72 (122)
Q Consensus        10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~   72 (122)
                      ..+.+..+.+.++.+.++..+.+++|.+.-+.. .-++.++|..+..+..+.+.+..+++.++.
T Consensus       125 ~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~  188 (415)
T PRK11556        125 VALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVAS  188 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555566666666666666665543322 245556666555555555555444444433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=81.85  E-value=49  Score=31.59  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=14.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823          10 GTLSRLLSERDKAVLEMDKSKEELERSQATL   40 (122)
Q Consensus        10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl   40 (122)
                      ..+..+.++.+++...+.+....++.++..|
T Consensus       596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL  626 (769)
T PF05911_consen  596 EELEKLESEKEELEMELASCQDQLESLKNQL  626 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555554444444444444444

The function of this family is unknown.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=81.82  E-value=18  Score=26.41  Aligned_cols=77  Identities=22%  Similarity=0.308  Sum_probs=42.5

Q ss_pred             CCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh--------h----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823           5 LVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLAT--------L----STSAELDRLQEKYDKTCADLRRAQAELRV   72 (122)
Q Consensus         5 ~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~--------l----~tq~EldrlQekldk~~~Elrr~Q~ele~   72 (122)
                      +.+.++.+.++....+.+......++.+++.-......        +    .+-..|..+-+.+.....++..+..++..
T Consensus         5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~   84 (132)
T PF07926_consen    5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES   84 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777777776654433311        1    12235555555555555555555555555


Q ss_pred             HHHHHHHhh
Q psy2823          73 VQADNERVR   81 (122)
Q Consensus        73 tQ~~~e~~q   81 (122)
                      ....++...
T Consensus        85 a~~~l~~~e   93 (132)
T PF07926_consen   85 AKAELEESE   93 (132)
T ss_pred             HHHHHHHHH
Confidence            555554433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=81.53  E-value=26  Score=28.14  Aligned_cols=19  Identities=21%  Similarity=0.274  Sum_probs=7.4

Q ss_pred             HHHHHHHHhHHHHHHHHHH
Q psy2823          14 RLLSERDKAVLEMDKSKEE   32 (122)
Q Consensus        14 rl~~E~eka~~e~ek~~eE   32 (122)
                      .|..+..++..++..++.-
T Consensus        22 ~LE~~N~~Le~~i~~~~~~   40 (312)
T PF00038_consen   22 FLEQENKRLESEIEELREK   40 (312)
T ss_dssp             HHHHHHHHHHHHHHH----
T ss_pred             HHHHHhhhhHHHHHHHHhc
Confidence            3444555555555544443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0243|consensus

Probab=81.35  E-value=60  Score=32.25  Aligned_cols=101  Identities=25%  Similarity=0.386  Sum_probs=63.0

Q ss_pred             HHHHhHHHHHHHHHHHHHhHHHHHhh------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhh
Q psy2823          18 ERDKAVLEMDKSKEELERSQATLATL------------STSAELDRLQEKYDKTCADLRRAQAELRVVQADN---ERVRS   82 (122)
Q Consensus        18 E~eka~~e~ek~~eELErsQatl~~l------------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~---e~~q~   82 (122)
                      |+......++++..+++.....|..+            ....++++++++|++...++..++.++..++..+   +.+-+
T Consensus       442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~  521 (1041)
T KOG0243|consen  442 EKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIIS  521 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555555444221            2346889999999999999999998888887774   22223


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823          83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER  121 (122)
Q Consensus        83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~  121 (122)
                      ....+-.   ++....-.++..++.++..+..+...+++
T Consensus       522 ~~~~se~---~l~~~a~~l~~~~~~s~~d~s~l~~kld~  557 (1041)
T KOG0243|consen  522 QQEKSEE---KLVDRATKLRRSLEESQDDLSSLFEKLDR  557 (1041)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3222222   22333566777788888888777776654

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=81.14  E-value=40  Score=30.12  Aligned_cols=72  Identities=10%  Similarity=0.193  Sum_probs=42.9

Q ss_pred             HHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHH
Q psy2823          18 ERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGE   97 (122)
Q Consensus        18 E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e   97 (122)
                      .+++...+++++...+..++         .+..+++..+.....++.+.-.++..++.++.++.-.+..+-..+.+++.+
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~---------~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q  109 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQ---------DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ  109 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            45555555555555555555         455555666666666666666666666666666666666566666555544


Q ss_pred             H
Q psy2823          98 V   98 (122)
Q Consensus        98 ~   98 (122)
                      -
T Consensus       110 ~  110 (420)
T COG4942         110 E  110 (420)
T ss_pred             H
Confidence            3

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=81.11  E-value=23  Score=29.71  Aligned_cols=51  Identities=29%  Similarity=0.458  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH-------HHHHHHHHHH
Q psy2823          69 ELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ-------GEMESMKEEY  119 (122)
Q Consensus        69 ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ-------~e~e~l~~El  119 (122)
                      ++..++..++++.++-..|-.|+++-..++.|.++.|...|       .|.+++..||
T Consensus       177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL  234 (267)
T PF10234_consen  177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL  234 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            33344444444444444455555555555555555555555       4555555544

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=80.92  E-value=54  Score=31.41  Aligned_cols=66  Identities=26%  Similarity=0.298  Sum_probs=35.7

Q ss_pred             chHHHHHHHHHHHhHHHHHHHH----HHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823           9 PGTLSRLLSERDKAVLEMDKSK----EELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNER   79 (122)
Q Consensus         9 Q~~~~rl~~E~eka~~e~ek~~----eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~   79 (122)
                      +.++.+|+.||+++.+++.-.-    .++.++.-.     -..|++++.+........|...+..+..+..++..
T Consensus       477 ~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEq-----geaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~  546 (739)
T PF07111_consen  477 SLELQQLREERDRLDAELQLSARLIQQEVGRAREQ-----GEAERQQLSEVAQQLEQELQEKQESLAELEEQLEA  546 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777765432    333333322     23566666666555555555555444444444433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=80.80  E-value=28  Score=28.12  Aligned_cols=53  Identities=17%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823          64 RRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK  116 (122)
Q Consensus        64 rr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~  116 (122)
                      .++|+++...+.+...+-..-...+.+.-.+.++-..++..|...|..+..|+
T Consensus       129 ~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq  181 (192)
T PF11180_consen  129 NRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ  181 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333433333333333333333333333333444444444444333

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=80.69  E-value=15  Score=30.68  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          12 LSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRVVQA   75 (122)
Q Consensus        12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~   75 (122)
                      +....+.++.|.+.+...+.+++|.+.=+.. .-++.++|+.+..++.+.+.+..+++.+...+.
T Consensus       101 l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~  165 (385)
T PRK09859        101 LNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATI  165 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444455554432211 235566666666666666655555555544433

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=80.37  E-value=27  Score=29.32  Aligned_cols=65  Identities=18%  Similarity=0.275  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          55 KYDKTCADLRRAQAELRVVQADN-------ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        55 kldk~~~Elrr~Q~ele~tQ~~~-------e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      .......++..++..+.+..++.       ++-..+++|.++.|...|+-==-.-+++|+...|+..+=+.|
T Consensus       170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y  241 (267)
T PF10234_consen  170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY  241 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555554       333444455555555555433334467777777766665443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=80.31  E-value=20  Score=26.11  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=12.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823          17 SERDKAVLEMDKSKEELERSQATL   40 (122)
Q Consensus        17 ~E~eka~~e~ek~~eELErsQatl   40 (122)
                      ++...+..++..+....+...+.+
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~~~~~   26 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDAEEQL   26 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 21/104 (20%), Positives = 47/104 (45%)

Query: 18   ERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADN 77
             ++   L    +  E+  S  T    S    L   +E+       +   Q E+  ++ + 
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000

Query: 78   ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121
             + ++E+KT++E  +K + E  +L ++L+     +++ KEE  R
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 16/109 (14%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 12   LSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELR 71
              +L    +  ++++ +  +E  +   +L       +++ L+  Y      LR     LR
Sbjct: 919  YKKLHIGLENKIMQLQRKIDEQNKEYKSL-----LEKMNNLEITYSTETEKLRSDVERLR 973

Query: 72   VVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
            + + + +   +   ++QE++ K + E+++ + + +  +   +  K E E
Sbjct: 974  MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 12   LSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELR 71
            L     E   A   +   +EE+ + +  L       E   ++E  DK   +  +  +EL+
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ--TEKKTIEEWADKYKHETEQLVSELK 1029

Query: 72   VVQAD--NERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
                    E+     +   +  E ++    +L  + +  + ++   +  Y+
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 16/127 (12%)

Query: 12   LSRLLSERDKAVLEMDKSKEELERSQATLATLSTSA--ELDRLQEKYDKTCADLRRAQAE 69
               ++SE +  + + +KS++ELE+ +  L   S+    ++  LQ +  +  A L + + E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 70   LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQG--------------EMESM 115
            L+   A  E   S++    +K+ + +  +  L+  LE+ +               E+E++
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156

Query: 116  KEEYERS 122
            K E E +
Sbjct: 1157 KTELEDT 1163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.32
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	95.66
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.68
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.67
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	94.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.54
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.19
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	92.89
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	92.79
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.46
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.44
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.93
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	90.62
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	90.38
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	89.62
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	89.53
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.36
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	87.82
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	86.81
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	85.86
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	84.06
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	83.7
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	81.64
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	81.64
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.35
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.27
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	80.57
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	80.33
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	80.28

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.32  E-value=0.022  Score=40.67  Aligned_cols=29  Identities=14%  Similarity=0.201  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823          12 LSRLLSERDKAVLEMDKSKEELERSQATL   40 (122)
Q Consensus        12 ~~rl~~E~eka~~e~ek~~eELErsQatl   40 (122)
                      |..+...++.+..++..+...+......+
T Consensus        15 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~   43 (284)
T 1c1g_A           15 KENALDRADEAEADKKAAEDRSKQLEDEL   43 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444443333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=95.66  E-value=0.26  Score=35.55  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhHHHHHhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2823          15 LLSERDKAVLEMDKSKEELERSQATLATL---------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEK   85 (122)
Q Consensus        15 l~~E~eka~~e~ek~~eELErsQatl~~l---------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~   85 (122)
                      .++.-++++.++.+++++|++..+....|         .+..++..|++.+..+...|.-+|..-..++   ..++.++.
T Consensus         4 t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q---~~vq~qL~   80 (112)
T 1x79_B            4 TRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK---RDVQEQMA   80 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            34555566666666666666665555332         3456788888888888777776663333222   33556666


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhhHH
Q psy2823          86 TMQEKVEKSQGEVYRLKAKLENTQG  110 (122)
Q Consensus        86 ~lQ~elEksQ~e~~rlq~elE~aQ~  110 (122)
                      .|....+....++-||+++.++..+
T Consensus        81 ~Lt~~Re~V~~eL~rLQ~eNd~L~G  105 (112)
T 1x79_B           81 VLMQSREQVSEELVRLQKDNDSLQG  105 (112)
T ss_dssp             HHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhh
Confidence            6777777666666777666665543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.68  E-value=1.1  Score=34.58  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhHH
Q psy2823          12 LSRLLSERDKAVLEMDKSKEELERSQA   38 (122)
Q Consensus        12 ~~rl~~E~eka~~e~ek~~eELErsQa   38 (122)
                      +.+|...+..+-.++..+..++....+
T Consensus        20 i~~l~~~~~~lp~el~~le~~~~~l~~   46 (256)
T 3na7_A           20 IDSLEPLIREKRKDLDKALNDKEAKNK   46 (256)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            334444444444444444444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.67  E-value=1.1  Score=34.56  Aligned_cols=13  Identities=31%  Similarity=0.207  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHH
Q psy2823          48 ELDRLQEKYDKTC   60 (122)
Q Consensus        48 EldrlQekldk~~   60 (122)
                      |++-++..++.+.
T Consensus        91 E~~aL~kEie~~~  103 (256)
T 3na7_A           91 ELRSLNIEEDIAK  103 (256)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=94.36  E-value=0.67  Score=30.57  Aligned_cols=60  Identities=13%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE  106 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE  106 (122)
                      .+.|.+.++++.+...+..+...+...-.++...+--+..+...+++++..+..+..+|+
T Consensus        13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A           13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666655444444444444333344444444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.54  E-value=2.7  Score=34.77  Aligned_cols=107  Identities=12%  Similarity=0.210  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          13 SRLLSERDKAVLEMDKSKEELERSQATLATL-----------------------STSAELDRLQEKYDKTCADLRRAQAE   69 (122)
Q Consensus        13 ~rl~~E~eka~~e~ek~~eELErsQatl~~l-----------------------~tq~EldrlQekldk~~~Elrr~Q~e   69 (122)
                      +.+..+......++.++.+++.+.+..+..+                       ....++.++.++..+...++.+.+..
T Consensus       452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  531 (597)
T 3oja_B          452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTE  531 (597)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence            3444455555556666666666655555321                       11234555555666666666666655


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        70 le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      ....+...++.+.+...+..+++..+..+.+++.+..+.-.++..+.+.+
T Consensus       532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555556666666666666666666666666666666666666555544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.39  E-value=1.6  Score=45.47  Aligned_cols=46  Identities=15%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             HHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          75 ADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        75 ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      .+-++...+++..+.+++.|..-+.-|-+|..++......+...+.
T Consensus      2056 ~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A         2056 RETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence            3334444455556666666666666666666666666666665543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.19  E-value=3.1  Score=34.42  Aligned_cols=42  Identities=21%  Similarity=0.344  Sum_probs=25.9

Q ss_pred             HhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          79 RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        79 ~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      +.........+++++.+.++.++...+++.+..+..+++++.
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~  568 (597)
T 3oja_B          527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETS  568 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence            333444555566666666666777777777766666666654

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=92.89  E-value=0.76  Score=33.14  Aligned_cols=15  Identities=27%  Similarity=0.534  Sum_probs=5.6

Q ss_pred             HHhhhHHHHHHHHHH
Q psy2823          78 ERVRSEEKTMQEKVE   92 (122)
Q Consensus        78 e~~q~e~~~lQ~elE   92 (122)
                      +++.++.++|+.++.
T Consensus        86 Ekl~~eKe~L~~ql~  100 (110)
T 2v4h_A           86 EKLVEKKEYLQEQLE  100 (110)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHH
Confidence            333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=92.79  E-value=0.96  Score=42.02  Aligned_cols=17  Identities=18%  Similarity=0.350  Sum_probs=7.1

Q ss_pred             HhHHHHHHHHHHHHHhH
Q psy2823          21 KAVLEMDKSKEELERSQ   37 (122)
Q Consensus        21 ka~~e~ek~~eELErsQ   37 (122)
                      .+..++..++..|.+..
T Consensus       861 ~L~~eL~el~~~L~~le  877 (1184)
T 1i84_S          861 AKDEELQRTKERQQKAE  877 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.46  E-value=1.8  Score=31.53  Aligned_cols=99  Identities=18%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHhHHHHHHH--HHHHHHhHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy2823           8 PPGTLSRLLSERDKAVLEMDKS--KEELERSQA-TLATLSTSAELDRLQEKYDKTCADLRRA-------QAELRVVQADN   77 (122)
Q Consensus         8 ~Q~~~~rl~~E~eka~~e~ek~--~eELErsQa-tl~~l~tq~EldrlQekldk~~~Elrr~-------Q~ele~tQ~~~   77 (122)
                      +...+..+..-.|.-..++-..  -.-+..... -++.+..-.|+-+++.+.+....++...       ..++-.++..+
T Consensus        26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~  105 (138)
T 3hnw_A           26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKA  105 (138)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666655555433  222322221 2233444455555555555555555544       44444444444


Q ss_pred             HHhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy2823          78 ERVRSEEKTMQEKVEKSQGEVYRLKAKLE  106 (122)
Q Consensus        78 e~~q~e~~~lQ~elEksQ~e~~rlq~elE  106 (122)
                      +.+..++..+++++...+..+.+|.++++
T Consensus       106 e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A          106 ESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555544443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.44  E-value=1.6  Score=45.42  Aligned_cols=26  Identities=15%  Similarity=0.155  Sum_probs=12.6

Q ss_pred             CchHHHHHHHHHHHhHHHHHHHHHHH
Q psy2823           8 PPGTLSRLLSERDKAVLEMDKSKEEL   33 (122)
Q Consensus         8 ~Q~~~~rl~~E~eka~~e~ek~~eEL   33 (122)
                      +...|..++.++...+-+++....+.
T Consensus      1932 t~~~V~~l~~~L~~~~~~L~~k~~ea 1957 (3245)
T 3vkg_A         1932 TEAQVKDLQVSLAQKNRELDVKNEQA 1957 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555554444444333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.93  E-value=5.5  Score=37.19  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVR   81 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q   81 (122)
                      ..+..++++++....++.++..+....+...++.+
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555444444433

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=90.62  E-value=1.5  Score=34.11  Aligned_cols=7  Identities=0%  Similarity=-0.040  Sum_probs=2.5

Q ss_pred             hHHHHHH
Q psy2823          22 AVLEMDK   28 (122)
Q Consensus        22 a~~e~ek   28 (122)
                      +.+++..
T Consensus        75 ~~a~l~~   81 (369)
T 4dk0_A           75 RKAALAS   81 (369)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=90.38  E-value=1.5  Score=32.85  Aligned_cols=31  Identities=16%  Similarity=0.209  Sum_probs=17.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          44 STSAELDRLQEKYDKTCADLRRAQAELRVVQ   74 (122)
Q Consensus        44 ~tq~EldrlQekldk~~~Elrr~Q~ele~tQ   74 (122)
                      -++.++|..+..++.+.+.+..+++++...+
T Consensus        95 ~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~  125 (277)
T 2f1m_A           95 ISKQEYDQALADAQQANAAVTAAKAAVETAR  125 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556777666666666665555554444433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=89.62  E-value=3.1  Score=27.31  Aligned_cols=23  Identities=13%  Similarity=0.201  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          57 DKTCADLRRAQAELRVVQADNER   79 (122)
Q Consensus        57 dk~~~Elrr~Q~ele~tQ~~~e~   79 (122)
                      .++..++.-++..+..+..++++
T Consensus        37 ~~~E~ev~~L~kKiq~lE~eld~   59 (81)
T 1ic2_A           37 KQLEDELVALQKKLKGTEDELDK   59 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=89.53  E-value=1.3  Score=34.25  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=10.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          45 TSAELDRLQEKYDKTCADLRRAQA   68 (122)
Q Consensus        45 tq~EldrlQekldk~~~Elrr~Q~   68 (122)
                      ++.+++.++..+..+.+++..+++
T Consensus       112 s~~~~~~a~~~~~~~~a~l~~~~a  135 (341)
T 3fpp_A          112 SQQDLDNAATEMAVKQAQIGTIDA  135 (341)
T ss_dssp             TTHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.36  E-value=7.3  Score=30.02  Aligned_cols=36  Identities=11%  Similarity=-0.017  Sum_probs=24.9

Q ss_pred             CCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823           5 LVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATL   40 (122)
Q Consensus         5 ~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl   40 (122)
                      +.++...|.=-.+...+....++.++.||.-=|...
T Consensus         5 f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesS   40 (189)
T 2v71_A            5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGS   40 (189)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666667777777777777777777766544

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=87.82  E-value=4.9  Score=27.38  Aligned_cols=73  Identities=18%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823          48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE  120 (122)
Q Consensus        48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE  120 (122)
                      =|++|-.|.+.+---+.-+|.+++.....+...-.+++.++...+....+..+|+.+...+++-+..|=+.++
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e   79 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3677777888888778888888777777777766666667777777777888888888888888877766554

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=86.81  E-value=6.6  Score=28.08  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823          12 LSRLLSERDKAVLEMDKSKEELERSQATL   40 (122)
Q Consensus        12 ~~rl~~E~eka~~e~ek~~eELErsQatl   40 (122)
                      |..|..+.+.+..+++++..|--+.-.+|
T Consensus        17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql   45 (120)
T 3i00_A           17 IERLYREISGLKAQLENMKTESQRVVLQL   45 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555544444433333

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=85.86  E-value=9.1  Score=28.55  Aligned_cols=18  Identities=22%  Similarity=0.305  Sum_probs=6.6

Q ss_pred             HHHHhhHHHHHHHHHHHH
Q psy2823          89 EKVEKSQGEVYRLKAKLE  106 (122)
Q Consensus        89 ~elEksQ~e~~rlq~elE  106 (122)
                      ..+..++..+..++..++
T Consensus       105 ~~~~~a~a~l~~a~a~l~  122 (277)
T 2f1m_A          105 ADAQQANAAVTAAKAAVE  122 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=84.06  E-value=1.5  Score=38.17  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      ...++.+..++--.+..+++.++..++...+..+.+|
T Consensus       420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l  456 (575)
T 2i1j_A          420 EVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAAL  456 (575)
T ss_dssp             ----------------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555666666666666666555554

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=83.70  E-value=4.7  Score=28.24  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=27.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q psy2823          45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM  115 (122)
Q Consensus        45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l  115 (122)
                      -+..+|.+.+...+....+.+..    +...+.+--.+|+..=+.-.|+++++..+|+..+...|.+..+|
T Consensus        21 kq~~id~lke~~~q~~~~~E~i~----vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L   87 (94)
T 3jsv_C           21 KQELIDKLKEEAEQHKIVMETVP----VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL   87 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            44566666665555544443322    22222222223333333344444444444444444444443333

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=81.64  E-value=11  Score=26.27  Aligned_cols=31  Identities=19%  Similarity=0.209  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823          83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEME  113 (122)
Q Consensus        83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e  113 (122)
                      ++..++..++.++..=..+-.++...+.+..
T Consensus        69 el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~   99 (107)
T 2no2_A           69 ELQVLQGSLETSAQSEANWAAEFAELEKERD   99 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444443344444444444333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=81.64  E-value=13  Score=27.09  Aligned_cols=32  Identities=38%  Similarity=0.617  Sum_probs=21.1

Q ss_pred             HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          88 QEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        88 Q~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      +++++..++++..|.-+|.++-.+++++..+.
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~  101 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRREN  101 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55566666777777777777777766666543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.35  E-value=13  Score=26.88  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=16.8

Q ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          80 VRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        80 ~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      ...++..++.+++.+.-++..++.++...+.+.-++..++
T Consensus        94 lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           94 LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.27  E-value=16  Score=27.80  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=16.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823          87 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEE  118 (122)
Q Consensus        87 lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~E  118 (122)
                      |+.++...++++.++...+.++..+.-.+++.
T Consensus        95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek  126 (168)
T 3o0z_A           95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDM  126 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555554443

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=80.57  E-value=17  Score=30.19  Aligned_cols=17  Identities=35%  Similarity=0.640  Sum_probs=6.4

Q ss_pred             HHHHHHhhHHHHHHHHH
Q psy2823          87 MQEKVEKSQGEVYRLKA  103 (122)
Q Consensus        87 lQ~elEksQ~e~~rlq~  103 (122)
                      ++.+++++...+.....
T Consensus       190 ~~~k~~k~~~~~~~a~~  206 (486)
T 3haj_A          190 LQDKIEKCKQDVLKTKE  206 (486)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=80.33  E-value=4.9  Score=31.15  Aligned_cols=65  Identities=23%  Similarity=0.388  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823          12 LSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRVVQAD   76 (122)
Q Consensus        12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~   76 (122)
                      +....+.+..+...++..+.+++|.+.-+.. ..++.+++.++..++.+.+.+..++..+......
T Consensus        93 l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~  158 (359)
T 3lnn_A           93 LAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAK  158 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4455566666666666666666665533321 2456777777777777777777777666554443

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=80.28  E-value=7.5  Score=29.85  Aligned_cols=20  Identities=15%  Similarity=0.318  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy2823          48 ELDRLQEKYDKTCADLRRAQ   67 (122)
Q Consensus        48 EldrlQekldk~~~Elrr~Q   67 (122)
                      .++++..+.++..-++.++.
T Consensus       158 ~l~KaK~~Y~~~c~e~e~a~  177 (312)
T 3abh_A          158 EVEAAKKAHHAACKEEKLAI  177 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	87.29
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	83.74

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.29  E-value=3.2  Score=28.52  Aligned_cols=69  Identities=12%  Similarity=0.189  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q psy2823          47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM  115 (122)
Q Consensus        47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l  115 (122)
                      .++.+++..+.+....+.++.........+.+++......+......+...+..+..+...+...++..
T Consensus       109 ~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~  177 (279)
T d2efka1         109 QEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEES  177 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444333333333322333333444444444444333333

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=5  Score=27.54  Aligned_cols=24  Identities=17%  Similarity=0.291  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823          96 GEVYRLKAKLENTQGEMESMKEEY  119 (122)
Q Consensus        96 ~e~~rlq~elE~aQ~e~e~l~~El  119 (122)
                      ..+..+..++..+....+....+|
T Consensus       167 ~~~~K~~~k~~~~~~~~~~a~~~Y  190 (288)
T d2efla1         167 ADVEKARQQAQIRHQMAEDSKADY  190 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444433