Psyllid ID: psy2824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MTTDLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHcHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccEEEEcccccEEEccHHEccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccHHHHHHHHccccccccccEEEcccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MTTDLVDHVLQEVARrneqfkpttVNKLIELeidpgtllafdkndinlgelrqdKDKYLKDLTRDNTQLLINKIwelpterrdedivatlpdptyilprekplpkitmTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEkkhqwmlpvpanadpmeDQFAKKSAAQKERVARNEYQRLRNIARsnktkvpsvgvmphesvlssrqlREAADVAVVSTAsigkyqpslpleks
Flexible Loop (DISEMBL)
MTTDLVDHVLQevarrneqfkpttvnklieleidpgtllafdkndinlgelrqdkdkylkdltrdntqllinkiwelpterrdedivatlpdptyilprekplpkitmtKWEEfalekgirktkkvkkkwddilkewvptygfkrrlaEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEyqrlrniarsnktkvpsvgvmPHESVLSSRQLREAADVAVVSTasigkyqpslpleks
Low Complexity Region (SEG)
MTTDLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEkgirktkkvkkkWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS
Disordered region (IsUnstruct)
******************QFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLP*************************************************************************************
Disordered Region (DISOPRED)
****LVD********************LIELEIDPGTLLAFDKNDINLG*******KYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPR****************************KKWDDILKEWVPTYGFK*****K************************************************************************AVVSTASIGKY**S******
Disordered Region (DISEMBL)
MTTDLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGI********KWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQ*************RNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS
Disordered Region (DISPRO)
*TTDLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKT*********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTDLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q2KIH4	365	Ribosome biogenesis regul	yes	N/A	0.995	0.660	0.461	4e-51
Q9CYH6	365	Ribosome biogenesis regul	yes	N/A	0.962	0.638	0.473	5e-51
A1A5P2	365	Ribosome biogenesis regul	yes	N/A	0.962	0.638	0.469	7e-51
Q15050	365	Ribosome biogenesis regul	yes	N/A	0.921	0.610	0.482	2e-50
Q9XVT0	333	Ribosome biogenesis regul	yes	N/A	0.892	0.648	0.454	1e-40
A8WY26	329	Ribosome biogenesis regul	N/A	N/A	0.892	0.656	0.458	3e-40
Q08746	203	Regulator of ribosome bio	yes	N/A	0.694	0.827	0.385	4e-22
Q9SH88	318	Ribosome biogenesis regul	yes	N/A	0.859	0.654	0.314	2e-20
Q869Q2	317	Ribosome biogenesis regul	yes	N/A	0.863	0.659	0.331	2e-20
O59678	166	Ribosome biogenesis regul	yes	N/A	0.528	0.771	0.389	3e-16

>sp|Q2KIH4|RRS1_BOVIN Ribosome biogenesis regulatory protein homolog OS=Bos taurus GN=RRS1 PE=2 SV=1

 Score =  201 bits (511), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 158/245 (64%), Gaps = 4/245 (1%)

Query: 1   MTTDLVDHVLQEVAR-RNEQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKY 58
           M    V+ +L +  R   E+ +  TV K +ELE D G LLA D+N    L      ++  
Sbjct: 1   MEGQSVEELLAKAERDEAEKLQRITVLKELELEFDLGNLLASDRNPPTGLRHAGPTQEAE 60

Query: 59  LKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALE 117
           L+ L RDNTQLLIN++W+LPTER +E +VA LP+P+  LPREKP+P+   +T+W++FA  
Sbjct: 61  LRALARDNTQLLINQLWQLPTERVEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARL 120

Query: 118 KGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQK 177
           KGIR  KK    WD++   W   +G++R   + K +W++ VP NADPMEDQFAK+  A+K
Sbjct: 121 KGIRPKKKTNLVWDEVSGRWRRRWGYQRARDDTK-EWLIEVPGNADPMEDQFAKRIQAKK 179

Query: 178 ERVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSL 237
           ERVA+NE  RLRN+AR++K ++PS   M      S  +L  A  VA VSTAS+G++Q  L
Sbjct: 180 ERVAKNELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERL 239

Query: 238 PLEKS 242
           P EK+
Sbjct: 240 PKEKA 244

Involved in ribosome biogenesis.
Bos taurus (taxid: 9913)

>sp|Q9CYH6|RRS1_MOUSE Ribosome biogenesis regulatory protein homolog OS=Mus musculus GN=Rrs1 PE=2 SV=1

 Score =  201 bits (510), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 159/243 (65%), Gaps = 10/243 (4%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQ---DKDKYLK 60
           +L+    QE A   E+ +  TV+K +ELE D G LLA D+N   +  LRQ     +  L+
Sbjct: 8   ELLAKAEQEEA---EKLQRITVHKELELEFDLGNLLASDRNPPTV--LRQAGPSPEAELR 62

Query: 61  DLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKG 119
            L RDNTQLLIN++W LPTER +E +VA LP+P   LPREKPLP+   +T+W++FA  KG
Sbjct: 63  ALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKG 122

Query: 120 IRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKER 179
           IR  KK    WD+   +W   +G+KR   + K +W++ VP +ADPMEDQFAK++ A+KER
Sbjct: 123 IRPKKKTNLVWDEASGQWRRRWGYKRARDDTK-EWLIEVPGSADPMEDQFAKRTQAKKER 181

Query: 180 VARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPL 239
           VA+NE  RLRN+AR++K ++PS   +      S  +L  A  VA VSTAS+G++Q  LP 
Sbjct: 182 VAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPK 241

Query: 240 EKS 242
           EK+
Sbjct: 242 EKA 244

Involved in ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|A1A5P2|RRS1_RAT Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus GN=Rrs1 PE=2 SV=1

 Score =  200 bits (509), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 114/243 (46%), Positives = 160/243 (65%), Gaps = 10/243 (4%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQ---DKDKYLK 60
           +L+    QE A   E+ +  TV+K +ELE D G LLA D+N   +  LRQ     +  L+
Sbjct: 8   ELLAKAKQEEA---EKLQRITVHKELELEFDLGNLLASDRNPPTV--LRQAGPSPEAELR 62

Query: 61  DLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKG 119
            L RDNTQLL+N++W+LPTER +E +VA LP+P   LPREKPLP+   +T+W++FA  KG
Sbjct: 63  ALARDNTQLLVNQLWQLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKG 122

Query: 120 IRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKER 179
           IR  KK    WD++  +W   +G+KR   + K +W++ VP +ADPMEDQFAK+  A+KER
Sbjct: 123 IRPKKKTNLVWDEVSGQWRRRWGYKRARDDTK-EWLIEVPGSADPMEDQFAKRIRAKKER 181

Query: 180 VARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPL 239
           VA+NE  RLRN+AR++K ++PS   +      S  +L  A  VA VSTAS+G++Q  LP 
Sbjct: 182 VAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPK 241

Query: 240 EKS 242
           EK+
Sbjct: 242 EKA 244

Involved in ribosome biogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q15050|RRS1_HUMAN Ribosome biogenesis regulatory protein homolog OS=Homo sapiens GN=RRS1 PE=1 SV=2

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 151/226 (66%), Gaps = 3/226 (1%)

Query: 18  EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLTRDNTQLLINKIWE 76
           E+ +  TV+K +EL+ D G LLA D+N    L       +  L+ L RDNTQLLIN++W+
Sbjct: 19  EKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQ 78

Query: 77  LPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIRKTKKVKKKWDDILK 135
           LPTER +E IVA LP+PT  LPREKPLP+   +T+W++FA  KGIR  KK    WD++  
Sbjct: 79  LPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSG 138

Query: 136 EWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSN 195
           +W   +G++R   + K +W++ VP NADP+EDQFAK+  A+KERVA+NE  RLRN+AR++
Sbjct: 139 QWRRRWGYQRARDDTK-EWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAH 197

Query: 196 KTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
           K ++PS   +      S  +L  A  VA VSTAS+G++Q  LP EK
Sbjct: 198 KMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEK 243

Involved in ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9XVT0|RRS1_CAEEL Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis elegans GN=rrbs-1 PE=3 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/231 (45%), Positives = 140/231 (60%), Gaps = 15/231 (6%)

Query: 21  KPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTE 80
           K T V K I+  ID G LL  D+  I     + D  + L++  R NTQLL N IW+L  +
Sbjct: 4   KSTEVEKAIDPIIDLGNLLFIDREPI-----QGDASEGLEERARKNTQLLFNNIWQLEQK 58

Query: 81  RRDEDIVATLPDPTYILPREKPLP-KITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVP 139
           R +E I+ TLP  TY LPREK LP K   TKWE++A EKGI K KK KK +D+  KEW P
Sbjct: 59  RVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKP 118

Query: 140 TYGFKRRLAEKKHQWMLPVPANA-DPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTK 198
           TYG+ RR  +    W++ +P NA DP +D FA++   +KERVA+N+ QR++N+AR  KT 
Sbjct: 119 TYGY-RRGNDDTKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNDMQRMKNLARQMKTT 177

Query: 199 VPS-------VGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
           V S       +GV       S +Q+R A D A ++TAS GK+Q  L  EK+
Sbjct: 178 VKSGPSTEKMIGVGVDAKEKSKQQVRFAVDRAKLATASAGKFQEGLKGEKA 228

Involved in ribosome biogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|A8WY26|RRS1_CAEBR Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis briggsae GN=rrbs-1 PE=3 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/231 (45%), Positives = 141/231 (61%), Gaps = 15/231 (6%)

Query: 21  KPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTE 80
           K T V K I+  ID G LL  D+       L+ D ++ L++  R NTQLL N IW+L  +
Sbjct: 4   KSTEVEKAIDPIIDLGNLLFIDREP-----LQGDAEEGLEERARKNTQLLFNNIWQLEQK 58

Query: 81  RRDEDIVATLPDPTYILPREKPLP-KITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVP 139
           R +E I+ TLP  TY LPREK LP K   TKWE++A EKGI K KK KK +D+  KEW P
Sbjct: 59  RVEEAIIVTLPAATYRLPREKKLPEKKEPTKWEKYAKEKGIEKRKKDKKVFDEATKEWKP 118

Query: 140 TYGFKRRLAEKKHQWMLPVPANA-DPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTK 198
           TYG+ RR  +    W++ +P NA DP +D FA++   +KERVA+NE QR++N+AR  KT 
Sbjct: 119 TYGY-RRGNDNTKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNEMQRMKNLARQMKTT 177

Query: 199 V---PS----VGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
           V   PS    +GV       S + +R A D A ++TAS GK+Q  L  EK+
Sbjct: 178 VKTGPSTDKMIGVGIDAKDKSKQDVRFAVDRAKLATASAGKFQEGLKGEKA 228

Involved in ribosome biogenesis.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q08746|RRS1_YEAST Regulator of ribosome biosynthesis OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRS1 PE=1 SV=1

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 24/192 (12%)

Query: 22  PTTVNKLIELEIDPGTLLAFD-----KNDINLGELRQDKDKYLKDLTRDNTQLLINKIWE 76
           P TV K I +  D G L AFD     KND++    R  +++ +K LTRDN QLLIN++  
Sbjct: 10  PVTVEKPIPVVYDLGNLAAFDSNVLDKNDLDSSNAR--REEKIKSLTRDNVQLLINQLLS 67

Query: 77  LPTERRDEDIVAT-----------LPDPTYILPREKPLPKI-TMTKWEEFALEKGIR-KT 123
           LP +   E +  T           LPDPT  LPREKPLPK   MTKWE+FA +KGI+ K 
Sbjct: 68  LPMKTTTESVGGTGGQSSVMTLLQLPDPTTDLPREKPLPKAKAMTKWEKFAAKKGIKPKE 127

Query: 124 KKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAK----KSAAQKER 179
           +  K  +D+   EWVP +G+K    +   QW++ V       +++         A +K  
Sbjct: 128 RAGKMIYDEASGEWVPKWGYKGANKKLDDQWLVEVDDKVKGTDNELIDPRTLNRAERKRL 187

Query: 180 VARNEYQRLRNI 191
           V +NE Q+ RN+
Sbjct: 188 VKKNEKQQRRNM 199

Required for ribosome biogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 18/226 (7%)

Query: 32  EIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQL---LINKIWELPTERRDEDIVA 88
           ++D G LLAF+ N          + + +K++  + T+L   + NK++  P+   ++  + 
Sbjct: 12  QVDVGNLLAFNPNH-RFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTETNDGPIV 70

Query: 89  TLPDPTYILPREKPLPKITM-TKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRL 147
            LP PT  LPREK +P+    TKWEEFAL+KGI+K KK K  WD+   ++   +G+  R+
Sbjct: 71  QLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRHGYD-RV 129

Query: 148 AEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNK----------- 196
            +     ++    + +P  D FAK+   +K+RV + E  RL+N+  + K           
Sbjct: 130 NDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPSHVQLA 189

Query: 197 -TKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
            T +P  G       +   +L + A +A  STAS GK+   LP EK
Sbjct: 190 ATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEK 235

Involved in ribosome biogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q869Q2|RRS1_DICDI Ribosome biogenesis regulatory protein homolog OS=Dictyostelium discoideum GN=rrs1 PE=3 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 120/217 (55%), Gaps = 8/217 (3%)

Query: 31  LEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATL 90
           L  D G L AFD + +N  E + + ++Y+  L+RDN QLLI+++++LP +  +E  +A L
Sbjct: 27  LLYDLGNLTAFDHSSLNKTEYKSNPNEYINKLSRDNVQLLISRLFQLPIKEIEEGSLALL 86

Query: 91  PDPTYILPREKPLPKIT-MTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAE 149
           P  T  +PRE+ LP     T+WE FA  KGI+K KK   +WD   +E+ PT+G+K +  +
Sbjct: 87  PRCTTPIPRERSLPTSKPKTRWEAFAEIKGIKKKKKSSMEWDKEHEEYRPTFGYK-KAND 145

Query: 150 KKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPSVGVM---- 205
             + W +    +    ED F K    + +RV++ + +  RN   ++  ++ +VG      
Sbjct: 146 VANDWAMLARPDDKVGEDPFKKLEDEKNDRVSKQKKREQRNFDEASMRQMSNVGKTLSFD 205

Query: 206 -PHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
             H   + S  + +  DVA +STAS+GK+   +  EK
Sbjct: 206 KEHRGQIKS-DMEKVFDVAKLSTASLGKFDKRVENEK 241

Involved in ribosome biogenesis.

Dictyostelium discoideum (taxid: 44689)

>sp|O59678|RRS1_SCHPO Ribosome biogenesis regulatory protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.16 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 3/131 (2%)

Query: 29  IELEIDPGTLLAFDKNDINLGELR-QDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIV 87
           I L+ D G + AFD + ++  +L   +K+ +L  L+RDN Q L+NK+  LP ER  + ++
Sbjct: 9   IPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTSDGVL 68

Query: 88  ATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIR-KTKKVKKKWDDILKEWVPTYGFKR 145
             LP+    LPR KPLPK    TKW+ FA  KGI  K ++ +  +D+   EWVP +G+K 
Sbjct: 69  LQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVPKWGYKG 128

Query: 146 RLAEKKHQWML 156
           +  E + QW++
Sbjct: 129 KNKELETQWLV 139

Involved in ribosome biogenesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
242247401	343	ribosome biogenesis regulatory protein h	0.896	0.632	0.566	2e-62
357608815	353	putative regulator of ribosome biosynthe	0.983	0.674	0.518	2e-62
198463129	344	GA16881 [Drosophila pseudoobscura pseudo	0.979	0.688	0.531	4e-59
261335954	357	putative regulator of ribosome biosynthe	0.983	0.666	0.522	2e-58
443429412	354	ribosome biogenesis regulatory protein-l	0.983	0.672	0.518	2e-58
170044045	352	regulator of ribosome biosynthesis [Cule	0.975	0.670	0.483	5e-55
260801679	336	hypothetical protein BRAFLDRAFT_200232 [	0.966	0.696	0.508	1e-53
157131695	347	ribosome biogenesis regulatory protein [	0.975	0.680	0.475	1e-53
340716142	339	PREDICTED: ribosome biogenesis regulator	0.983	0.702	0.460	1e-53
350396634	339	PREDICTED: ribosome biogenesis regulator	0.983	0.702	0.464	1e-53

>gi|242247401|ref|NP_001156275.1| ribosome biogenesis regulatory protein homolog [Acyrthosiphon pisum] gi|239789078|dbj|BAH71186.1| ACYPI008665 [Acyrthosiphon pisum]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 161/219 (73%), Gaps = 2/219 (0%)

Query: 24  TVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRD 83
           +V K+++ EID GTLL FD ND +  +LR D++KYL   TR+N QLLINK++ELP +  D
Sbjct: 23  SVTKVLDPEIDLGTLLCFDSNDFDTPQLRSDQEKYLTYETRNNVQLLINKLFELPMKNED 82

Query: 84  EDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYG 142
             +   LP+P Y LPREKPLP    +TKW++FA+EKGI+KT K K  WDDIL++W+PTYG
Sbjct: 83  GYMYVDLPEPRYNLPREKPLPTPKPLTKWQKFAIEKGIKKTPKPKATWDDILQKWIPTYG 142

Query: 143 FKRRLAEKKHQWMLPVPANA-DPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPS 201
           +K+  A+K+  W+L VP NA DP  D FA+K  A+KERVA+NEYQRLRNIA S K KVP+
Sbjct: 143 YKKAAADKEKDWILEVPGNAADPNIDLFAQKREAKKERVAKNEYQRLRNIAASRKIKVPA 202

Query: 202 VGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLE 240
           VG+ P E  L S QL+ A DVA +STAS+GK+QP +  E
Sbjct: 203 VGLPPLEGTLHSNQLKTAVDVAKISTASVGKFQPKISKE 241

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608815|gb|EHJ66162.1| putative regulator of ribosome biosynthesis [Danaus plexippus]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/241 (51%), Positives = 171/241 (70%), Gaps = 3/241 (1%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDIN--LGELRQDKDKYLKD 61
           D+V+ +L++  ++ E++KP TV K +++E D GTLL +D ND++  L     ++D+YL+ 
Sbjct: 2   DIVNEILEKEQKKAEKYKPITVEKHLDVEYDLGTLLVYDTNDLDSKLLNANSNRDEYLQS 61

Query: 62  LTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGI 120
           L+RDNTQLL+NKIWELPTER DE IV  LP PT +LPR KP+PK   +TKW+EFA  KGI
Sbjct: 62  LSRDNTQLLLNKIWELPTERIDEAIVVRLPQPTTVLPRSKPVPKPKPLTKWQEFAKAKGI 121

Query: 121 RKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
            K KK K KWD+ L++WVP YGF++  AEK+  W++ VP + DPM D + KK+  + E+V
Sbjct: 122 TKQKKDKLKWDEQLQKWVPLYGFRKAAAEKEKDWLIEVPQHMDPMTDMYEKKAGEKSEKV 181

Query: 181 ARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLE 240
           A+NE QRL+NIARS K K+P VG+       S+ QL  AA VA  STAS+GK+Q  LP E
Sbjct: 182 AKNELQRLKNIARSRKVKIPRVGLPVTSDKASATQLSTAAVVAKASTASLGKFQDKLPKE 241

Query: 241 K 241
           +
Sbjct: 242 Q 242

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198463129|ref|XP_001352703.2| GA16881 [Drosophila pseudoobscura pseudoobscura] gi|198151125|gb|EAL30202.2| GA16881 [Drosophila pseudoobscura pseudoobscura]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 162/239 (67%), Gaps = 2/239 (0%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLT 63
           D+V  VL +  +  E++KP TV+K +E  +D GTLL  D ND +  ELR ++++YL  LT
Sbjct: 2   DVVKEVLAKHQKELEKYKPITVDKHLECRLDVGTLLITDPNDFDDRELRDNREEYLTALT 61

Query: 64  RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIRK 122
           RDNTQLL+N IWELPTER DE IVA LP+PT +LPR + +P    +TKWE+FA EKGI K
Sbjct: 62  RDNTQLLLNAIWELPTERVDESIVAKLPEPTTVLPRLRKVPGPRPLTKWEQFAKEKGITK 121

Query: 123 TKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
            K+ KK +DD L +WVPTYGFK   AEK   W+L VP NADP  D F KK   + E+VA+
Sbjct: 122 KKRDKKTYDDTLDKWVPTYGFKHAEAEKSKDWVLEVPQNADPNTDMFQKKIDLRNEKVAK 181

Query: 183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
           NE QR++NI R+ K  +P  G +  E+  SS QL  A  VA  STAS+GK+Q  LP EK
Sbjct: 182 NEIQRMKNIVRARKVDMPRSGYLGPEAA-SSSQLLTAVTVAKSSTASVGKFQNKLPKEK 239

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|261335954|emb|CBH09287.1| putative regulator of ribosome biosynthesis [Heliconius melpomene]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/241 (52%), Positives = 170/241 (70%), Gaps = 3/241 (1%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQD--KDKYLKD 61
           D+V+ +L++  ++ E++KP TV K ++L+ D GTLLA D ND++   L+ D  +D YL+ 
Sbjct: 2   DIVNEILEKEQKKAEKYKPITVEKHLDLDFDIGTLLAADTNDLDPKSLKSDSQRDIYLQS 61

Query: 62  LTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGI 120
           L RDNTQLL+NKIWELPTER DE IV  LP PT +LPR KP+PK   +TKW+EFA  KGI
Sbjct: 62  LARDNTQLLLNKIWELPTERIDEAIVVKLPQPTTVLPRSKPVPKPKPLTKWQEFAKAKGI 121

Query: 121 RKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
            K KK K +WD+ L++WVP YGFK+  AEK+  W++ VP + +PM D + KK+  + E+V
Sbjct: 122 TKKKKDKLEWDEQLQKWVPLYGFKKAAAEKEKDWLIEVPQHVNPMTDMYEKKAGEKSEKV 181

Query: 181 ARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLE 240
           A+NE QRL+NIAR+ K K+P VG+       S+ QL  AA VA  STAS+GK+Q  LP E
Sbjct: 182 AKNELQRLKNIARARKVKIPRVGIPVTSDKASATQLSTAATVAKASTASLGKFQNKLPKE 241

Query: 241 K 241
           K
Sbjct: 242 K 242

Source: Heliconius melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443429412|gb|AGC92697.1| ribosome biogenesis regulatory protein-like protein [Heliconius erato]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/241 (51%), Positives = 170/241 (70%), Gaps = 3/241 (1%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQD--KDKYLKD 61
           D+V+ +L++  ++ E++KP TV K ++L+ D GTLLA D ND++   L+ D  +D YL+ 
Sbjct: 2   DIVNEILEQEQKKAEKYKPITVEKHLDLDFDIGTLLAADTNDLDAKSLKSDSQRDIYLQS 61

Query: 62  LTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGI 120
           L RDNTQLL+NKIWELPTER DE IV  LP PT +LPR KP+PK   +TKW+EFA  KGI
Sbjct: 62  LARDNTQLLLNKIWELPTERIDEAIVVKLPQPTTVLPRFKPVPKPKPLTKWQEFAKAKGI 121

Query: 121 RKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
            K KK + +WD+ L++WVP YGFK+  AEK+  W++ VP + +PM D + KK+  + E+V
Sbjct: 122 TKKKKDRLEWDEQLQKWVPLYGFKKAAAEKEKDWLIEVPQHVNPMTDMYEKKAGEKSEKV 181

Query: 181 ARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLE 240
           A+NE QRL+NIAR+ K K+P VG+       S+ QL  AA VA  STAS+GK+Q  LP E
Sbjct: 182 AKNELQRLKNIARARKVKIPRVGIPVTSDKASATQLSTAATVAKASTASLGKFQDKLPKE 241

Query: 241 K 241
           K
Sbjct: 242 K 242

Source: Heliconius erato

Species: Heliconius erato

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044045|ref|XP_001849672.1| regulator of ribosome biosynthesis [Culex quinquefasciatus] gi|167867283|gb|EDS30666.1| regulator of ribosome biosynthesis [Culex quinquefasciatus]

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 166/240 (69%), Gaps = 4/240 (1%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLT 63
           D+V  VLQ+  +  E++KP TV K +E+ +D G L+A D N  +    ++D+++YL DLT
Sbjct: 2   DIVQEVLQKQKKDLEKYKPITVEKHLEVTVDVGHLMATDPNYFDDDSFKKDQEQYLMDLT 61

Query: 64  RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREK--PLPKITMTKWEEFALEKGIR 121
           RDNTQLLIN +WELPTER +E +VA +P P  +LPR +  P+PK  +TKWEE A  KGI+
Sbjct: 62  RDNTQLLINAVWELPTEREEEAVVAKMPAPKTVLPRARKLPVPK-PLTKWEEIAKAKGIK 120

Query: 122 KTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVA 181
           K  + KK +D++L +WVPTYG++R  AEK+  W+L VP NADP +D F +K   + +R+A
Sbjct: 121 KRVRDKKVYDEVLDKWVPTYGYQRFKAEKEKDWVLEVPQNADPNKDMFQEKRDLRIDRIA 180

Query: 182 RNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
           +NE  R+RNIAR+ K + P  G +  ++  S+R+L  AA+VA  STAS+GK+Q  L  EK
Sbjct: 181 KNEIARMRNIARAKKIQTPRTGFLGPDAA-SARELVTAANVAKASTASVGKFQEKLTNEK 239

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260801679|ref|XP_002595723.1| hypothetical protein BRAFLDRAFT_200232 [Branchiostoma floridae] gi|229280970|gb|EEN51735.1| hypothetical protein BRAFLDRAFT_200232 [Branchiostoma floridae]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 160/238 (67%), Gaps = 4/238 (1%)

Query: 6   VDHVLQEVAR-RNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTR 64
           V+ VL+ V R +  ++K   V K IE ++D G LL  D+N + L + R DK+ YLK   R
Sbjct: 4   VEEVLESVNRSQASKYKTIEVQKDIEPQLDLGNLLTVDQNPLELKKFRADKEVYLKSQAR 63

Query: 65  DNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIRKT 123
           DNTQLL N IW+LPTER +E I   LP+ T +LPREKP+PK+   T+WE++A  KGI+K 
Sbjct: 64  DNTQLLFNAIWKLPTERVEEAICVKLPETTTVLPREKPIPKVKPPTRWEQYAQLKGIQKR 123

Query: 124 KKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARN 183
           KK +  WD+ LKEW P +G+KR   E K  W++ VP NADP EDQF K+  A+KERVA+N
Sbjct: 124 KKGRMVWDEELKEWRPRWGYKRANDETKD-WVIEVPGNADPNEDQFEKRMKAKKERVAKN 182

Query: 184 EYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
           E QRLRNIAR+ ++KVP VG+ P E   S  ++  A  +A  STAS+GK+   LP EK
Sbjct: 183 ELQRLRNIARATRSKVPGVGLTPTEKP-SKEEVGLALHLAKKSTASLGKFTEKLPKEK 239

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157131695|ref|XP_001662293.1| ribosome biogenesis regulatory protein [Aedes aegypti] gi|94469176|gb|ABF18437.1| regulator of ribosome synthesis [Aedes aegypti] gi|108871437|gb|EAT35662.1| AAEL012185-PA [Aedes aegypti]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 163/240 (67%), Gaps = 4/240 (1%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLT 63
           D+V  VL++  +  E++KP TV K +E  +D G L+  D N  +  + + D+++YL DLT
Sbjct: 2   DIVKEVLEKQKKDLEKYKPITVQKHLEAVVDEGHLMVTDPNYFDDDKFKSDREQYLLDLT 61

Query: 64  RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREK--PLPKITMTKWEEFALEKGIR 121
           RDNTQLLIN IWELPTER +E +VA LP    +LPR +  P+PK  +TKWE+ A  KGI+
Sbjct: 62  RDNTQLLINSIWELPTEREEESVVAKLPAARMVLPRARKLPVPK-PLTKWEQIAKAKGIK 120

Query: 122 KTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVA 181
           K  + KK +D++L +WVPTYG++R  AEK+  W++ VP NADP +D FA+K   + ER+A
Sbjct: 121 KRTRDKKVYDEVLDKWVPTYGYQRFKAEKEKDWIIEVPQNADPNKDMFAEKRDLRIERIA 180

Query: 182 RNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
           +NE  R+RNIAR+ K + P  G +  ES  S+++L  AA++A  STAS+G +Q  L  EK
Sbjct: 181 KNEISRMRNIARAKKIQTPRTGFLGPESA-SAKELVTAANIAKASTASVGVFQEKLSNEK 239

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716142|ref|XP_003396560.1| PREDICTED: ribosome biogenesis regulatory protein homolog [Bombus terrestris]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 3/241 (1%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLT 63
           D+V+ +L+   +  +  K T VNK +E+E D GTLLA D N ++L  L+   ++YLK LT
Sbjct: 2   DVVNSILENSTQEKDIHKSTEVNKDVEIETDLGTLLALDYNTVDLKALKSQTEQYLKSLT 61

Query: 64  RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIRK 122
           RDN Q++INKIWELP ER DE IVA LP   ++LPR + +PK   +TKW++FA E+GI+ 
Sbjct: 62  RDNVQIVINKIWELPIERVDEVIVAKLPKQKFVLPRARQIPKPKPLTKWQQFAKERGIKT 121

Query: 123 TKKVKKK--WDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
            +K K K  WD+ L++W+PT+G+K   A ++ +W++ V      MED FA    A++ER 
Sbjct: 122 KRKGKSKLKWDEELQKWIPTFGYKHNKAIEQKEWLVEVNNEGKAMEDPFAAAKTAKEERK 181

Query: 181 ARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLE 240
           ++NE QRLRNIA++   K+P VG+   E    S+QL +A  +A  STAS+GK+Q  LP E
Sbjct: 182 SKNELQRLRNIAKAKNIKIPKVGLPTREHFPDSQQLSQAVTIARTSTASLGKFQDRLPKE 241

Query: 241 K 241
           K
Sbjct: 242 K 242

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396634|ref|XP_003484615.1| PREDICTED: ribosome biogenesis regulatory protein homolog [Bombus impatiens]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 3/241 (1%)

Query: 4   DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLT 63
           D+V+ +L+   +  +  K T VNK +E+E D GTLLA D N ++   L+   ++YLK+LT
Sbjct: 2   DVVNSILENSTQEKDTRKSTEVNKDVEIETDLGTLLALDYNTVDPKALKSQTEQYLKNLT 61

Query: 64  RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIRK 122
           RDN Q++INKIWELP ER DE IVA LP   ++LPR + +PK   +TKW++FA EKGI+ 
Sbjct: 62  RDNVQVVINKIWELPIERVDEVIVAKLPKQKFVLPRARQIPKPKPLTKWQQFAKEKGIKT 121

Query: 123 TKKVKKK--WDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
            +K K K  WD+ L++W+PT+G+KR  A ++ +W++ V      MED FA    A++ER 
Sbjct: 122 KRKGKSKLKWDEELQKWIPTFGYKRNKAIEQKEWLVEVNNEGKAMEDPFAAAKTAKEERK 181

Query: 181 ARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLE 240
           ++NE QRLRNIA++   K+P VG+   E    S+QL +A  +A  STAS+GK+Q  LP E
Sbjct: 182 SKNELQRLRNIAKAKNIKIPKVGLPTREHFPDSQQLSQAMTIARTSTASLGKFQDRLPKE 241

Query: 241 K 241
           K
Sbjct: 242 K 242

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
ZFIN|ZDB-GENE-030131-9345	346	rrs1 "RRS1 ribosome biogenesis	0.987	0.690	0.5	2.5e-56
FB|FBgn0052409	361	CG32409 [Drosophila melanogast	0.979	0.656	0.493	7.8e-55
UNIPROTKB|F1RTZ0	372	RRS1 "Uncharacterized protein"	0.975	0.634	0.45	6.7e-49
UNIPROTKB|F1MPT7	365	RRS1 "Ribosome biogenesis regu	0.975	0.646	0.441	2e-47
RGD|1311403	365	Rrs1 "RRS1 ribosome biogenesis	0.954	0.632	0.444	2.6e-47
UNIPROTKB|Q2KIH4	365	RRS1 "Ribosome biogenesis regu	0.975	0.646	0.441	3.3e-47
MGI|MGI:1929721	365	Rrs1 "RRS1 ribosome biogenesis	0.954	0.632	0.448	4.2e-47
UNIPROTKB|F1PRD1	365	RRS1 "Uncharacterized protein"	0.975	0.646	0.437	8.8e-47
UNIPROTKB|Q15050	365	RRS1 "Ribosome biogenesis regu	0.921	0.610	0.455	1.4e-46
WB|WBGene00007617	333	rrbs-1 [Caenorhabditis elegans	0.892	0.648	0.428	2.4e-37

ZFIN|ZDB-GENE-030131-9345 rrs1 "RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 122/244 (50%), Positives = 162/244 (66%)

Query:     1 MTTDLVDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDK-DKY 58
             M +  ++ VL +  R   E+ K  TV K ++LE DPG LLAFDKN ++  + + +K +  
Sbjct:     1 MASCSIEDVLAKAERDEAEKLKSITVLKELDLEFDPGLLLAFDKNRLDTRDFKGNKREDC 60

Query:    59 LKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITM-TKWEEFALE 117
             L+ L RDNTQLLIN+IW+LPTER DE IVA LP+PT  LPREKP PK    TKWE+FA  
Sbjct:    61 LRSLARDNTQLLINEIWKLPTERVDEVIVAKLPEPTTKLPREKPAPKPKPPTKWEQFAKL 120

Query:   118 XXXXXXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQK 177
                         WD++ KEW   +G+KR   + K +W++ VPA ADP EDQFAK++ A+K
Sbjct:   121 KGIQKKKKTNLVWDEVHKEWKRRWGYKRAKDDTK-EWLIEVPATADPNEDQFAKRNKAKK 179

Query:   178 ERVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSL 237
             ERVARNEY RL+NIAR+ K KVP  G++P  S  +  +L +A  +A +STAS+GK+Q  L
Sbjct:   180 ERVARNEYNRLKNIARAQKVKVPGTGLLP-TSQQTKAELAQAVSLAKISTASVGKFQEKL 238

Query:   238 PLEK 241
             P EK
Sbjct:   239 PKEK 242

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0052409 CG32409 [Drosophila melanogaster (taxid:7227)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 118/239 (49%), Positives = 153/239 (64%)

Query:     4 DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLT 63
             D+V  VL +  +  +++KP TV K +E  +D G+LL  D ND +  ELR +K++YL  LT
Sbjct:    14 DVVKEVLAKHQKELDKYKPITVEKHLECRLDVGSLLITDPNDFDDRELRDNKEEYLTALT 73

Query:    64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPR-EKPLPKITMTKWEEFALEXXXXX 122
             R+NTQLL+N IWELPTER DE IVA LP+PT +LPR  KP     +TKWE+FA E     
Sbjct:    74 RENTQLLVNAIWELPTERVDESIVAKLPEPTTVLPRLRKPPGPRPLTKWEKFAKEKGISK 133

Query:   123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
                    +D+ + +WVPTYGFKR  AEK   W+L VP NADP  D F KK   + E+VA+
Sbjct:   134 KKKDKKTYDETMDKWVPTYGFKRAEAEKAKDWVLEVPQNADPNTDMFQKKIDLRNEKVAK 193

Query:   183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
             NE QR++NI R+ K  +P  G +  E+  SS QL  A  VA  STAS+GK+Q  LP EK
Sbjct:   194 NEIQRMKNIVRAKKIDMPRSGYLGPEAA-SSSQLLTAVTVAKSSTASVGKFQNKLPKEK 251

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RTZ0 RRS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 108/240 (45%), Positives = 154/240 (64%)

Query:     6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLT 63
             V+ +L +  R   E+ +  TV+K +ELE D G LLA D+N    L      K+  L+ L 
Sbjct:    13 VEELLAKAERDEAEKLQRITVHKELELEFDLGNLLASDRNPPTGLRHAGPTKEAELRALA 72

Query:    64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXX 122
             RDNTQLLIN++W+LPTER +E +VA LP+PT  LPREKP+P+   +T+W++FA       
Sbjct:    73 RDNTQLLINQLWQLPTERVEETLVARLPEPTTRLPREKPVPRPRPLTRWQQFARLKGIRP 132

Query:   123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
                    WD++  +W   +G++R   + K +W++ VP+NADPMEDQFAK+  A+KERVA+
Sbjct:   133 KKKTNLVWDEVSGQWRRRWGYQRARDDTK-EWLIEVPSNADPMEDQFAKRIQAKKERVAK 191

Query:   183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
             NE  RLRN+AR++K ++PS   M      S  +L  A  VA VSTAS+G++Q  LP EK+
Sbjct:   192 NELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKA 251

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1MPT7 RRS1 "Ribosome biogenesis regulatory protein homolog" [Bos taurus (taxid:9913)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 106/240 (44%), Positives = 152/240 (63%)

Query:     6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLT 63
             V+ +L +  R   E+ +  TV K +ELE D G LLA D+N    L      ++  L+ L 
Sbjct:     6 VEELLAKAERDEAEKLQRITVLKELELEFDLGNLLASDRNPPTGLRHAGPTQEAELRALA 65

Query:    64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXX 122
             RDNTQLLIN++W+LPTER +E +VA LP+P+  LPREKP+P+   +T+W++FA       
Sbjct:    66 RDNTQLLINQLWQLPTERVEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRP 125

Query:   123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
                    WD++  +W   +G++R   + K +W++ VP NADPMEDQFAK+  A+KERVA+
Sbjct:   126 KKKTNLVWDEVSGQWRRRWGYQRARDDTK-EWLIEVPGNADPMEDQFAKRIQAKKERVAK 184

Query:   183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
             NE  RLRN+AR++K ++PS   M      S  +L  A  VA VSTAS+G++Q  LP EK+
Sbjct:   185 NELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKA 244

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1311403 Rrs1 "RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 109/245 (44%), Positives = 158/245 (64%)

Query:     6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQ---DKDKYLKD 61
             V+ +L +  +   E+ +  TV+K +ELE D G LLA D+N   +  LRQ     +  L+ 
Sbjct:     6 VEELLAKAKQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTV--LRQAGPSPEAELRA 63

Query:    62 LTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXX 120
             L RDNTQLL+N++W+LPTER +E +VA LP+P   LPREKPLP+   +T+W++FA     
Sbjct:    64 LARDNTQLLVNQLWQLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGI 123

Query:   121 XXXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
                      WD++  +W   +G+KR   + K +W++ VP +ADPMEDQFAK+  A+KERV
Sbjct:   124 RPKKKTNLVWDEVSGQWRRRWGYKRARDDTK-EWLIEVPGSADPMEDQFAKRIRAKKERV 182

Query:   181 ARNEYQRLRNIARSNKTKVPS-VGVMP--HESVLSSRQLREAADVAVVSTASIGKYQPSL 237
             A+NE  RLRN+AR++K ++PS  G+ P  H+S     +L  A  VA VSTAS+G++Q  L
Sbjct:   183 AKNELNRLRNLARAHKMQMPSSAGLHPTGHQS---KEELGRAMQVAKVSTASVGRFQERL 239

Query:   238 PLEKS 242
             P EK+
Sbjct:   240 PKEKA 244

GO:0000794 "condensed nuclear chromosome" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0007080 "mitotic metaphase plate congression" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q2KIH4 RRS1 "Ribosome biogenesis regulatory protein homolog" [Bos taurus (taxid:9913)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 106/240 (44%), Positives = 151/240 (62%)

Query:     6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLT 63
             V+ +L +  R   E+ +  TV K +ELE D G LLA D+N    L      ++  L+ L 
Sbjct:     6 VEELLAKAERDEAEKLQRITVLKELELEFDLGNLLASDRNPPTGLRHAGPTQEAELRALA 65

Query:    64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXX 122
             RDNTQLLIN++W+LPTER +E +VA LP+P+  LPREKP+P+   +T+W++FA       
Sbjct:    66 RDNTQLLINQLWQLPTERVEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRP 125

Query:   123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
                    WD++   W   +G++R   + K +W++ VP NADPMEDQFAK+  A+KERVA+
Sbjct:   126 KKKTNLVWDEVSGRWRRRWGYQRARDDTK-EWLIEVPGNADPMEDQFAKRIQAKKERVAK 184

Query:   183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
             NE  RLRN+AR++K ++PS   M      S  +L  A  VA VSTAS+G++Q  LP EK+
Sbjct:   185 NELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKA 244

GO:0005730 "nucleolus" evidence=ISS

GO:0007080 "mitotic metaphase plate congression" evidence=ISS

GO:0000794 "condensed nuclear chromosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:1929721 Rrs1 "RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 110/245 (44%), Positives = 157/245 (64%)

Query:     6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQ---DKDKYLKD 61
             V+ +L +  +   E+ +  TV+K +ELE D G LLA D+N   +  LRQ     +  L+ 
Sbjct:     6 VEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTV--LRQAGPSPEAELRA 63

Query:    62 LTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXX 120
             L RDNTQLLIN++W LPTER +E +VA LP+P   LPREKPLP+   +T+W++FA     
Sbjct:    64 LARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGI 123

Query:   121 XXXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
                      WD+   +W   +G+KR   + K +W++ VP +ADPMEDQFAK++ A+KERV
Sbjct:   124 RPKKKTNLVWDEASGQWRRRWGYKRARDDTK-EWLIEVPGSADPMEDQFAKRTQAKKERV 182

Query:   181 ARNEYQRLRNIARSNKTKVPS-VGVMP--HESVLSSRQLREAADVAVVSTASIGKYQPSL 237
             A+NE  RLRN+AR++K ++PS  G+ P  H+S     +L  A  VA VSTAS+G++Q  L
Sbjct:   183 AKNELNRLRNLARAHKMQMPSSAGLHPTGHQS---KEELGRAMQVAKVSTASVGRFQERL 239

Query:   238 PLEKS 242
             P EK+
Sbjct:   240 PKEKA 244

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1PRD1 RRS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 105/240 (43%), Positives = 150/240 (62%)

Query:     6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLT 63
             V+ +L +  R   E+ +  TV+K +ELE D G LLA D N    L       +  L+ L 
Sbjct:     6 VEELLAKAERDEAEKLQRITVHKELELEFDLGNLLASDPNPPAGLRRAGPSPEAELQALA 65

Query:    64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXX 122
             RDNTQLLIN++W+LPTER +E +VA LP+PT  LPREKP+P+   +T+W++FA       
Sbjct:    66 RDNTQLLINQLWQLPTERVEEALVARLPEPTTRLPREKPVPRPRPLTRWQQFARLKGIRP 125

Query:   123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
                    WD++  +W   +G++R   + K +W++ VP  ADP+EDQFAK+  A+KERVA+
Sbjct:   126 KKKTNLVWDEVSGQWRRRWGYQRARDDTK-EWLIEVPGGADPLEDQFAKRIQAKKERVAK 184

Query:   183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
             NE  RLRN+AR++K ++PS   M      S  +L  A  VA VSTAS+G++Q  LP EK+
Sbjct:   185 NELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKA 244

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q15050 RRS1 "Ribosome biogenesis regulatory protein homolog" [Homo sapiens (taxid:9606)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 103/226 (45%), Positives = 145/226 (64%)

Query:    18 EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLTRDNTQLLINKIWE 76
             E+ +  TV+K +EL+ D G LLA D+N    L       +  L+ L RDNTQLLIN++W+
Sbjct:    19 EKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQ 78

Query:    77 LPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXXXXXXXXXWDDILK 135
             LPTER +E IVA LP+PT  LPREKPLP+   +T+W++FA              WD++  
Sbjct:    79 LPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSG 138

Query:   136 EWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSN 195
             +W   +G++R   + K +W++ VP NADP+EDQFAK+  A+KERVA+NE  RLRN+AR++
Sbjct:   139 QWRRRWGYQRARDDTK-EWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAH 197

Query:   196 KTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
             K ++PS   +      S  +L  A  VA VSTAS+G++Q  LP EK
Sbjct:   198 KMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEK 243

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007080 "mitotic metaphase plate congression" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00007617 rrbs-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 99/231 (42%), Positives = 134/231 (58%)

Query:    21 KPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTE 80
             K T V K I+  ID G LL  D+  I  G    D  + L++  R NTQLL N IW+L  +
Sbjct:     4 KSTEVEKAIDPIIDLGNLLFIDREPIQ-G----DASEGLEERARKNTQLLFNNIWQLEQK 58

Query:    81 RRDEDIVATLPDPTYILPREKPLP-KITMTKWEEFALEXXXXXXXXXXXXWDDILKEWVP 139
             R +E I+ TLP  TY LPREK LP K   TKWE++A E            +D+  KEW P
Sbjct:    59 RVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKP 118

Query:   140 TYGFKRRLAEKKHQWMLPVPANA-DPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTK 198
             TYG++R   + K  W++ +P NA DP +D FA++   +KERVA+N+ QR++N+AR  KT 
Sbjct:   119 TYGYRRGNDDTK-DWLIEIPDNAEDPNKDFFAERREKKKERVAKNDMQRMKNLARQMKTT 177

Query:   199 V---PS----VGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
             V   PS    +GV       S +Q+R A D A ++TAS GK+Q  L  EK+
Sbjct:   178 VKSGPSTEKMIGVGVDAKEKSKQQVRFAVDRAKLATASAGKFQEGLKGEKA 228

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SH88	RRS1_ARATH	No assigned EC number	0.3141	0.8595	0.6540	yes	N/A
Q2KIH4	RRS1_BOVIN	No assigned EC number	0.4612	0.9958	0.6602	yes	N/A
A1A5P2	RRS1_RAT	No assigned EC number	0.4691	0.9628	0.6383	yes	N/A
Q9CYH6	RRS1_MOUSE	No assigned EC number	0.4732	0.9628	0.6383	yes	N/A
Q08746	RRS1_YEAST	No assigned EC number	0.3854	0.6942	0.8275	yes	N/A
Q869Q2	RRS1_DICDI	No assigned EC number	0.3317	0.8636	0.6593	yes	N/A
Q15050	RRS1_HUMAN	No assigned EC number	0.4823	0.9214	0.6109	yes	N/A
Q9XVT0	RRS1_CAEEL	No assigned EC number	0.4545	0.8925	0.6486	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	242
pfam04939	164	pfam04939, RRS1, Ribosome biogenesis regulatory pr	1e-57
COG5225	172	COG5225, RRS1, Uncharacterized protein involved in	4e-24

>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1)

 Score =  180 bits (459), Expect = 1e-57
 Identities = 81/165 (49%), Positives = 108/165 (65%), Gaps = 2/165 (1%)

Query: 29  IELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVA 88
              E D G LLAFD N ++L +   D+++ LK L RDN QLLIN++  LPTER  + ++ 
Sbjct: 1   SPYEFDLGNLLAFDPNPLDLSD-GTDREEDLKSLARDNVQLLINQLLSLPTERTTDGVLV 59

Query: 89  TLPDPTYILPREKPLPK-ITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRL 147
            LP+PT  LPREKPLPK    TKWE+FA +KGI+K KK K  +D+   EWVP +G+KR  
Sbjct: 60  QLPEPTTRLPREKPLPKPKPPTKWEKFAKKKGIKKRKKSKLVYDEATGEWVPRWGYKRAN 119

Query: 148 AEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIA 192
            + +  W++ V  N DP ED FAKK   +KERVA+NE + L+N  
Sbjct: 120 KDLEKDWIIEVKPNDDPKEDPFAKKRREKKERVAKNEKRELKNKK 164

This family consists of several eukaryotic ribosome biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear protein that is essential for the maturation of 25 S rRNA and the 60 S ribosomal subunit assembly in Saccharomyces cerevisiae. Length = 164

>gnl|CDD|227550 COG5225, RRS1, Uncharacterized protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score = 94.4 bits (234), Expect = 4e-24
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 22  PTTVNKLIELEIDPGTLLAFDKNDINLGELR-QDKDKYLKDLTRDNTQLLINKIWELPTE 80
           P      I   +D G + AFD N ++  +L    ++  +K L RDN Q L N++  LP  
Sbjct: 2   PVMNELKIPTVVDLGNVAAFDLNVLDKNDLDSSQEESNIKSLKRDNVQELKNQLCSLPAR 61

Query: 81  RRDEDIVATLPDPTYILPREKPLPKI-TMTKWEEFALEKGIRKTKKVKKK-WDDILKEWV 138
           R  + ++  LP+ T  LPREKPLPK    TKWE FA  KGI   K+     +D+   EWV
Sbjct: 62  RTSDLVLLQLPESTTALPREKPLPKEKIETKWERFARTKGIEPKKRSGPLVYDEASGEWV 121

Query: 139 PTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKER-VARNEYQRLRNIARS 194
           P +G+K +      QW++         E +       Q++  + +NE  R  NI+R 
Sbjct: 122 PKWGYKGKNKRLLKQWLVEG-------EVKLKTLLRRQRKNNIKKNEANRRGNISRR 171

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PF04939	164	RRS1: Ribosome biogenesis regulatory protein (RRS1	100.0
KOG1765|consensus	181		100.0
COG5225	172	RRS1 Uncharacterized protein involved in ribosome	100.0

>PF04939 RRS1: Ribosome biogenesis regulatory protein (RRS1); InterPro: IPR007023 This is a family of eukaryotic ribosomal biogenesis regulatory proteins

Probab=100.00  E-value=1.1e-72  Score=479.28  Aligned_cols=163  Identities=55%  Similarity=0.904  Sum_probs=158.7

Q ss_pred             ccccccccccccccCCCCCcccccCCchHHHHHHHHHHHHHHHHHhhcCCccccCCceeeecCCCCcCCCCCCCCCCC-C
Q psy2824          29 IELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKI-T  107 (242)
Q Consensus        29 ~~~~~DLGnLla~D~~p~~~~~~~~~~e~~L~~~ardn~Q~Lin~l~~Lp~e~~~~g~~a~LP~p~t~lPReKPlPk~-p  107 (242)
                      ++|+||||||||||+||||. .+.++.|+||.++||||+|+|||+||+||++++++|+||+||+|+|.||||||||+| |
T Consensus         1 t~~~~Dlg~Lla~D~~p~d~-~~~~~~e~~L~~~ardn~Q~Lin~l~~Lp~~~~~~g~~~~LP~p~t~LPReKplPk~K~   79 (164)
T PF04939_consen    1 TPLEFDLGNLLAFDPNPLDP-SSSSDREEYLKSLARDNTQLLINQLFELPTERTEDGVLAKLPEPTTRLPREKPLPKPKP   79 (164)
T ss_pred             CCceeeccceeeecCCcccc-cccCCcHHHHHHHHHHHHHHHHHHHHhCCceecCCCeEEECCCCCccCcccCCCCCCCC
Confidence            58999999999999999988 566679999999999999999999999999999999999999999999999999999 9


Q ss_pred             CCcHHHHHHHhCCccccccccccccccCceecccccccccccccCCceeeCCCCCCCCcCHHHHHHHHHHHHHHhhHHHH
Q psy2824         108 MTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQR  187 (242)
Q Consensus       108 ~TkWE~FA~~KGI~kkKksk~v~DE~~~eW~prwGyk~~~kd~~~~wiiEv~~~~d~~eDpf~~~~~eKkerv~KNe~~~  187 (242)
                      +||||+||+.|||+|+|||+|||||++|+|||||||+|+|++.+++|||||++++++++|||+++++||++||+||++||
T Consensus        80 ~TkWE~FA~~KGI~K~Kk~~lv~DE~~~eW~prwGyk~~nkd~~~~wiiEv~~~~~~~eDpf~~~~~eKkerv~Kne~~~  159 (164)
T PF04939_consen   80 PTKWEKFAKKKGIKKRKKSKLVYDEETGEWVPRWGYKRANKDKEKDWIIEVKPNDDPGEDPFEKKREEKKERVAKNEKQR  159 (164)
T ss_pred             CChHHHHHHHcCCccccCcCccccccccchhhcccccccccccccCceEEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q psy2824         188 LRNIA  192 (242)
Q Consensus       188 ~rN~~  192 (242)
                      ++|++
T Consensus       160 lrN~k  164 (164)
T PF04939_consen  160 LRNIK  164 (164)
T ss_pred             HhcCC
Confidence            99984

; GO: 0042254 ribosome biogenesis, 0005634 nucleus

>KOG1765|consensus

Probab=100.00  E-value=9.3e-69  Score=453.68  Aligned_cols=176  Identities=47%  Similarity=0.813  Sum_probs=169.6

Q ss_pred             CCccccccccccccccccccccCCCCCcccccCC---chHHHHHHHHHHHHHHHHHhhcCCccccCCceeeecCCCCcCC
Q psy2824          21 KPTTVNKLIELEIDPGTLLAFDKNDINLGELRQD---KDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYIL   97 (242)
Q Consensus        21 ~~~~V~k~~~~~~DLGnLla~D~~p~~~~~~~~~---~e~~L~~~ardn~Q~Lin~l~~Lp~e~~~~g~~a~LP~p~t~l   97 (242)
                      .+++|++++++.||||||+|||.||++...+.++   .+..|.+++|||||+|||+||+||++++++|+|++||+|||.|
T Consensus         1 ~~~~vek~i~~~~DlGNllafd~n~l~~~~~~ss~a~~~~~l~~~~rdnvQ~lvN~l~~lp~~rt~e~vv~qLPe~Tt~L   80 (181)
T KOG1765|consen    1 MSTEVEKEIPLQFDLGNLLAFDRNPLDLLTLVSSGAEREKELNSLTRDNVQLLVNKLWSLPSKRTEEGVVVQLPEPTTRL   80 (181)
T ss_pred             CCccccccccceeecchhhhccCCcCccccccCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccceeEeCCCccccC
Confidence            3789999999999999999999999998877665   8999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC-CCCcHHHHHHHhCCccccccccccccccCceecccccccccccccCCceeeCCCCCCCCcCHHHHHHHHH
Q psy2824          98 PREKPLPKI-TMTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQ  176 (242)
Q Consensus        98 PReKPlPk~-p~TkWE~FA~~KGI~kkKksk~v~DE~~~eW~prwGyk~~~kd~~~~wiiEv~~~~d~~eDpf~~~~~eK  176 (242)
                      |||||||+| |+||||+||+.|||.||||+++||||++|+|+|||||+|+|++...+||||+++++.+.+|||++.+++|
T Consensus        81 PReK~lPr~k~~TkWe~FAr~KGI~krKk~~lV~DEasgew~pr~GY~~~ndd~~~~wLvEi~dk~~~~~D~fa~~r~~k  160 (181)
T KOG1765|consen   81 PREKPLPRPKPETKWERFARKKGIEKRKKEKLVYDEASGEWKPRWGYKRKNDDLDKQWLVEIPDKEKTLVDPFALRRRQK  160 (181)
T ss_pred             ccccCCCCCCCccHHHHHHHHcCcchhhccCcceeccccccccccCccccccchhhhhhhccCCcccccccHHHHHHHHH
Confidence            999999999 9999999999999999999999999999999999999999966666999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHhhhhcC
Q psy2824         177 KERVARNEYQRLRNIARSNK  196 (242)
Q Consensus       177 kerv~KNe~~~~rN~~~a~~  196 (242)
                      |+||+|||+|||+|++||.|
T Consensus       161 K~rv~Kne~nRl~Nl~ra~k  180 (181)
T KOG1765|consen  161 KNRVKKNEKNRLRNLKRARK  180 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999976

>COG5225 RRS1 Uncharacterized protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-52  Score=347.89  Aligned_cols=167  Identities=35%  Similarity=0.569  Sum_probs=156.7

Q ss_pred             CccccccccccccccccccccCCCCCcccccCC-chHHHHHHHHHHHHHHHHHhhcCCccccCCceeeecCCCCcCCCCC
Q psy2824          22 PTTVNKLIELEIDPGTLLAFDKNDINLGELRQD-KDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPRE  100 (242)
Q Consensus        22 ~~~V~k~~~~~~DLGnLla~D~~p~~~~~~~~~-~e~~L~~~ardn~Q~Lin~l~~Lp~e~~~~g~~a~LP~p~t~lPRe  100 (242)
                      |++++..+++.|||||+.|||.|++|...++++ .|+.|.++.|||+|.|+|+|+.||..++.++++.+||+++|.|||+
T Consensus         2 ~~~~e~~ip~v~dlGn~aafD~n~ld~~~l~~s~~es~i~sL~rdnVQ~l~nql~slp~~rtsd~VllqLPe~tt~lPR~   81 (172)
T COG5225           2 PVMNELKIPTVVDLGNVAAFDLNVLDKNDLDSSQEESNIKSLKRDNVQELKNQLCSLPARRTSDLVLLQLPESTTALPRE   81 (172)
T ss_pred             CcccccCcceEeeccchhhcccccccccccchhhhhHHHHhhhHHHHHHHHHHHhcCchhcccceeEEeCCCccccCccc
Confidence            789999999999999999999999999988875 7788999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCcHHHHHHHhCCcccccc-ccccccccCceecccccccccccccCCceeeCCCCCCCCcCHHHHHHHHHHH
Q psy2824         101 KPLPKI-TMTKWEEFALEKGIRKTKKV-KKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKE  178 (242)
Q Consensus       101 KPlPk~-p~TkWE~FA~~KGI~kkKks-k~v~DE~~~eW~prwGyk~~~kd~~~~wiiEv~~~~d~~eDpf~~~~~eKke  178 (242)
                      ||+|++ +.||||+||+.|||.+|||+ +|||||.+|||||+|||+++|+...++||+|+...      --+..++++|.
T Consensus        82 kplpk~k~eTkWerFAr~KGI~pkkr~g~lvyDEasGEwvPkwGykgknk~l~~qwlve~~~k------~k~l~r~qrkn  155 (172)
T COG5225          82 KPLPKEKIETKWERFARTKGIEPKKRSGPLVYDEASGEWVPKWGYKGKNKRLLKQWLVEGEVK------LKTLLRRQRKN  155 (172)
T ss_pred             ccccccchHHHHHHHHHhcCCCccccCCCceeeccccccccccCccccchHHHHHHHHhhhHH------HHHHHHHHHHH
Confidence            999999 99999999999999999997 89999999999999999999999999999986543      12467889999


Q ss_pred             HHHhhHHHHHHHhhhh
Q psy2824         179 RVARNEYQRLRNIARS  194 (242)
Q Consensus       179 rv~KNe~~~~rN~~~a  194 (242)
                      .+.|||.+|++||.++
T Consensus       156 ~ikKne~~rr~n~~~~  171 (172)
T COG5225         156 NIKKNEANRRGNISRR  171 (172)
T ss_pred             HHHHHHHHHhcchhhc
Confidence            9999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 59/253 (23%)

Query: 8   HVLQEVARR---NEQFKPTTVNKLIEL-EI-DPGTLLAFD-----------KNDINLGEL 51
           H +Q   RR   ++ ++    N L+ L  + +     AF+           K   +    
Sbjct: 228 HSIQAELRRLLKSKPYE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 52  RQDKDKYLKD----LTRDNT-QLLINKIW----ELPTERRDEDIVATLPDPTYILPREKP 102
                  L      LT D    LL+  +     +LP E     ++ T P    I+     
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTNPRRLSIIAESIR 338

Query: 103 LPKITMTKWEEFALEKGIRKTKK---------VKKKWDD--ILKE--WVPTYGFKRRLAE 149
               T   W+    +K     +           +K +D   +      +PT      +  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-I-- 395

Query: 150 KKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQ-RLRNIARSNKTKVPSVGVMPHE 208
               W   + ++   + ++  K S  +K+     E    + +I    K K+ +   + H 
Sbjct: 396 ----WFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTISIPSIYLELKVKLENEYAL-HR 447

Query: 209 SVLSSRQLREAAD 221
           S++    + +  D
Sbjct: 448 SIVDHYNIPKTFD 460

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00