Psyllid ID: psy2833

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRIIE
Secondary Structure (PSIPRED)
ccccccccEEcccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHccccEEEEcccEEEcccHHHccccccccccEEEEEEccccEEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEcccccEEEEccccEEHHHHHHHHHHHHHHHHEcc
Coil and Loop (DISEMBL)
mfgpgsapvlvlssntkrdsgrkvqleniqagkyidssIVTLNHWlcssqdacllgdEYFCYItecqnpkaCTILLRGASKDLLNETERNLQDALHVARNimlepklvpgggaVEMAVSHVSASKDLLNETERNLQDALHVARNimlepklvpgggaVEMAVSHVSSCFQDNLLGRVVVTLGlhaggpglipggaeVFFGSVLGVRGALSLVRIIE
Flexible Loop (DISEMBL)
mfgpgsapvlvlssntkrdsgrkvqleniqagkyidSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRIIE
Low Complexity Region (SEG)
MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRIIE
Disordered region (IsUnstruct)
*************************LENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHV*****LL****RNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRII*
Disordered Region (DISOPRED)
******A******SN******RK***ENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA************QDALHVARNIMLEPKLVPGGGAVEMAVSHVSS**********VVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRIIE
Disordered Region (DISEMBL)
MFGPGSAPVLVLSSN********VQLENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRIIE
Disordered Region (DISPRO)
MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRIIE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRIIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
P48605	544	T-complex protein 1 subun	yes	N/A	0.333	0.132	0.739	2e-27
Q3T0K2	545	T-complex protein 1 subun	yes	N/A	0.328	0.130	0.690	3e-25
Q4R963	545	T-complex protein 1 subun	N/A	N/A	0.328	0.130	0.690	3e-25
Q6P502	545	T-complex protein 1 subun	yes	N/A	0.328	0.130	0.676	7e-25
P80318	545	T-complex protein 1 subun	yes	N/A	0.328	0.130	0.676	8e-25
P49368	545	T-complex protein 1 subun	no	N/A	0.328	0.130	0.676	8e-25
Q5NVF9	545	T-complex protein 1 subun	yes	N/A	0.328	0.130	0.676	8e-25
Q54TH8	530	T-complex protein 1 subun	yes	N/A	0.328	0.133	0.690	1e-24
O00782	559	T-complex protein 1 subun	N/A	N/A	0.300	0.116	0.723	9e-24
P54408	559	T-complex protein 1 subun	N/A	N/A	0.333	0.128	0.657	1e-23

>sp|P48605|TCPG_DROME T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 64/73 (87%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF ++TEC+ PKACTILLRGASKD+LNETERNLQDALHVARN++LEP+LV GGGAV
Sbjct: 357 IGDEYFTFVTECKEPKACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAV 416

Query: 115 EMAVSHVSASKDL 127
           EMA S +   K +
Sbjct: 417 EMAASQLLTRKQV 429

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Drosophila melanogaster (taxid: 7227)

>sp|Q3T0K2|TCPG_BOVIN T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=1 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 62/71 (87%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct: 355 IGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query: 115 EMAVSHVSASK 125
           EMAV+H    K
Sbjct: 415 EMAVAHALTEK 425

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.

Bos taurus (taxid: 9913)

>sp|Q4R963|TCPG_MACFA T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 62/71 (87%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct: 355 IGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query: 115 EMAVSHVSASK 125
           EMAV+H    K
Sbjct: 415 EMAVAHALTEK 425

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.

Macaca fascicularis (taxid: 9541)

>sp|Q6P502|TCPG_RAT T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1

 Score =  114 bits (284), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF +IT+C++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct: 355 IGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query: 115 EMAVSHVSASK 125
           EMAV+H    K
Sbjct: 415 EMAVAHALTEK 425

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.

Rattus norvegicus (taxid: 10116)

>sp|P80318|TCPG_MOUSE T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1

 Score =  113 bits (283), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF +IT+C++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct: 355 IGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query: 115 EMAVSHVSASK 125
           EMAV+H    K
Sbjct: 415 EMAVAHALTEK 425

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.

Mus musculus (taxid: 10090)

>sp|P49368|TCPG_HUMAN T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4

 Score =  113 bits (283), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF +IT+C++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct: 355 IGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query: 115 EMAVSHVSASK 125
           EMAV+H    K
Sbjct: 415 EMAVAHALTEK 425

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.

Homo sapiens (taxid: 9606)

>sp|Q5NVF9|TCPG_PONAB T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1

 Score =  113 bits (283), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF +IT+C++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct: 355 IGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query: 115 EMAVSHVSASK 125
           EMAV+H    K
Sbjct: 415 EMAVAHALTEK 425

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.

Pongo abelii (taxid: 9601)

>sp|Q54TH8|TCPG_DICDI T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 62/71 (87%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF ++ +C+ PKACTILLRGASKD+LNE ERNL DAL+VARNI+L+P+LVPGGGA+
Sbjct: 354 IGDEYFTFLEDCKEPKACTILLRGASKDILNEVERNLTDALNVARNIVLDPRLVPGGGAI 413

Query: 115 EMAVSHVSASK 125
           EMA+S   + K
Sbjct: 414 EMALSQALSEK 424

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Dictyostelium discoideum (taxid: 44689)

>sp|O00782|TCPG_OXYGR T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1

 Score =  110 bits (274), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 59/65 (90%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF ++T+C+NPKAC+ILLRGASKD+LNE ERNL DAL VARN+M+ PKLVPGGGA+
Sbjct: 357 IGDEYFSFMTKCENPKACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAI 416

Query: 115 EMAVS 119
           EM ++
Sbjct: 417 EMELA 421

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Oxytricha granulifera (taxid: 5947)

>sp|P54408|TCPG_TETPY T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 60/73 (82%)

Query: 47  CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
           C   +  L+GDEYF ++TEC+NP+AC+I+LRGASKD+LNE ERNL D L VA+NI + PK
Sbjct: 350 CGLFEVKLIGDEYFTFMTECENPEACSIILRGASKDVLNEMERNLHDCLAVAKNIFVNPK 409

Query: 107 LVPGGGAVEMAVS 119
           LVPGGGA+EM VS
Sbjct: 410 LVPGGGAIEMEVS 422

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Tetrahymena pyriformis (taxid: 5908)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
383854408	550	PREDICTED: T-complex protein 1 subunit g	0.328	0.129	0.830	3e-29
124487748	429	putative T-complex protein 1 subunit gam	0.305	0.153	0.909	6e-29
242023106	549	T-complex protein 1 subunit gamma, putat	0.305	0.120	0.878	9e-29
340714939	514	PREDICTED: t-complex protein 1 subunit g	0.328	0.138	0.816	1e-28
340714937	550	PREDICTED: t-complex protein 1 subunit g	0.328	0.129	0.816	1e-28
350402034	550	PREDICTED: T-complex protein 1 subunit g	0.328	0.129	0.816	1e-28
158290572	547	AGAP002759-PA [Anopheles gambiae str. PE	0.333	0.131	0.780	1e-28
374720905	548	AGAP002759-PA [Anopheles stephensi]	0.333	0.131	0.794	2e-28
170048590	546	T-complex protein 1 subunit gamma [Culex	0.333	0.131	0.767	3e-28
380011241	511	PREDICTED: T-complex protein 1 subunit g	0.328	0.138	0.802	3e-28

>gi|383854408|ref|XP_003702713.1| PREDICTED: T-complex protein 1 subunit gamma-like [Megachile rotundata]

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 68/71 (95%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LGDEYFC+ITEC++PKACTI+LRGASKD+LNETERNLQDALHVARN+++EPKLVPGGGAV
Sbjct: 358 LGDEYFCFITECKDPKACTIILRGASKDMLNETERNLQDALHVARNLLIEPKLVPGGGAV 417

Query: 115 EMAVSHVSASK 125
           EMAVS + A K
Sbjct: 418 EMAVSRLLAEK 428

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|124487748|gb|ABN11961.1| putative T-complex protein 1 subunit gamma [Maconellicoccus hirsutus]

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/66 (90%), Positives = 63/66 (95%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYFCYITEC+ PKACTILLRGASKD+L ETERNLQDALHVARNIML PKLVPGGGAV
Sbjct: 358 IGDEYFCYITECKEPKACTILLRGASKDVLMETERNLQDALHVARNIMLNPKLVPGGGAV 417

Query: 115 EMAVSH 120
           EMAVSH
Sbjct: 418 EMAVSH 423

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023106|ref|XP_002431977.1| T-complex protein 1 subunit gamma, putative [Pediculus humanus corporis] gi|212517328|gb|EEB19239.1| T-complex protein 1 subunit gamma, putative [Pediculus humanus corporis]

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/66 (87%), Positives = 64/66 (96%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYFC+ITEC+NPKACTILLRGASKD+LNE ERNLQDALHVA+NIML+PKLVPGGGAV
Sbjct: 358 IGDEYFCFITECKNPKACTILLRGASKDVLNEAERNLQDALHVAKNIMLDPKLVPGGGAV 417

Query: 115 EMAVSH 120
           EMAVS 
Sbjct: 418 EMAVSR 423

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714939|ref|XP_003395979.1| PREDICTED: t-complex protein 1 subunit gamma-like isoform 2 [Bombus terrestris]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 67/71 (94%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LGDEYFC+ITEC++PKACTI+LRGASKD+LNETERNLQDALHVARN+++EPKLVPGGGAV
Sbjct: 322 LGDEYFCFITECKDPKACTIILRGASKDVLNETERNLQDALHVARNLLIEPKLVPGGGAV 381

Query: 115 EMAVSHVSASK 125
           EMAVS +   K
Sbjct: 382 EMAVSRLLTEK 392

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714937|ref|XP_003395978.1| PREDICTED: t-complex protein 1 subunit gamma-like isoform 1 [Bombus terrestris]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 67/71 (94%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LGDEYFC+ITEC++PKACTI+LRGASKD+LNETERNLQDALHVARN+++EPKLVPGGGAV
Sbjct: 358 LGDEYFCFITECKDPKACTIILRGASKDVLNETERNLQDALHVARNLLIEPKLVPGGGAV 417

Query: 115 EMAVSHVSASK 125
           EMAVS +   K
Sbjct: 418 EMAVSRLLTEK 428

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402034|ref|XP_003486345.1| PREDICTED: T-complex protein 1 subunit gamma-like [Bombus impatiens]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 67/71 (94%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LGDEYFC+ITEC++PKACTI+LRGASKD+LNETERNLQDALHVARN+++EPKLVPGGGAV
Sbjct: 358 LGDEYFCFITECKDPKACTIILRGASKDVLNETERNLQDALHVARNLLIEPKLVPGGGAV 417

Query: 115 EMAVSHVSASK 125
           EMAVS +   K
Sbjct: 418 EMAVSRLLTEK 428

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158290572|ref|XP_312164.4| AGAP002759-PA [Anopheles gambiae str. PEST] gi|157017960|gb|EAA07808.4| AGAP002759-PA [Anopheles gambiae str. PEST]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 68/73 (93%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYFC++TEC++PKACTILLRGASKD+LNETERNLQDALHVARN+ML+PKL+PGGGAV
Sbjct: 357 MGDEYFCFVTECEDPKACTILLRGASKDVLNETERNLQDALHVARNLMLDPKLLPGGGAV 416

Query: 115 EMAVSHVSASKDL 127
           EMAVS    +K +
Sbjct: 417 EMAVSQALTNKQI 429

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|374720905|gb|AEZ67841.1| AGAP002759-PA [Anopheles stephensi]

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 67/73 (91%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LGDEYFC++TEC +PKACTILLRGASKD+LNETERNLQDALHVARN+ML+PKL+PGGGAV
Sbjct: 357 LGDEYFCFVTECDDPKACTILLRGASKDVLNETERNLQDALHVARNLMLDPKLLPGGGAV 416

Query: 115 EMAVSHVSASKDL 127
           EMAVS    +K +
Sbjct: 417 EMAVSQALTNKQI 429

Source: Anopheles stephensi

Species: Anopheles stephensi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048590|ref|XP_001870702.1| T-complex protein 1 subunit gamma [Culex quinquefasciatus] gi|167870651|gb|EDS34034.1| T-complex protein 1 subunit gamma [Culex quinquefasciatus]

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 67/73 (91%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYFC++TEC +PKACTILLRGASKD+LNETERNLQDALHVARN+MLEP+L+PGGGAV
Sbjct: 357 MGDEYFCFVTECADPKACTILLRGASKDILNETERNLQDALHVARNLMLEPRLLPGGGAV 416

Query: 115 EMAVSHVSASKDL 127
           EMA+S    +K +
Sbjct: 417 EMAISQALTNKQI 429

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011241|ref|XP_003689719.1| PREDICTED: T-complex protein 1 subunit gamma-like isoform 2 [Apis florea]

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 67/71 (94%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYFC+ITEC++PKACTI+LRGASKD+LNETERNLQDALHVARN+++EPKLVPGGGAV
Sbjct: 319 VGDEYFCFITECKDPKACTIILRGASKDVLNETERNLQDALHVARNLLIEPKLVPGGGAV 378

Query: 115 EMAVSHVSASK 125
           EMAVS +   K
Sbjct: 379 EMAVSRLLTEK 389

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
FB|FBgn0015019	544	Cctgamma "Cctgamma" [Drosophil	0.337	0.134	0.739	4.1e-37
UNIPROTKB|F1PDX9	476	CCT3 "Uncharacterized protein"	0.523	0.237	0.516	3.6e-32
UNIPROTKB|Q3T0K2	545	CCT3 "T-complex protein 1 subu	0.328	0.130	0.690	9.9e-32
UNIPROTKB|F1RP17	547	CCT3 "T-complex protein 1 subu	0.328	0.129	0.690	1e-31
UNIPROTKB|P49368	545	CCT3 "T-complex protein 1 subu	0.328	0.130	0.676	2.1e-31
MGI|MGI:104708	545	Cct3 "chaperonin containing Tc	0.328	0.130	0.676	2.1e-31
RGD|735038	545	Cct3 "chaperonin containing Tc	0.328	0.130	0.676	2.1e-31
UNIPROTKB|E2RB79	549	CCT3 "Uncharacterized protein"	0.328	0.129	0.690	7.2e-31
ZFIN|ZDB-GENE-020419-5	543	cct3 "chaperonin containing TC	0.305	0.121	0.712	4.1e-30
ASPGD|ASPL0000038552	538	AN3134 [Emericella nidulans (t	0.300	0.120	0.707	5.7e-27

FB|FBgn0015019 Cctgamma "Cctgamma" [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 4.1e-37, Sum P(2) = 4.1e-37
 Identities = 54/73 (73%), Positives = 64/73 (87%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF ++TEC+ PKACTILLRGASKD+LNETERNLQDALHVARN++LEP+LV GGGAV
Sbjct:   357 IGDEYFTFVTECKEPKACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAV 416

Query:   115 EMAVSHVSASKDL 127
             EMA S +   K +
Sbjct:   417 EMAASQLLTRKQV 429

GO:0006457 "protein folding" evidence=ISS;NAS

GO:0005832 "chaperonin-containing T-complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS;NAS

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0060439 "trachea morphogenesis" evidence=IMP

GO:0007430 "terminal branching, open tracheal system" evidence=IMP

UNIPROTKB|F1PDX9 CCT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 275 (101.9 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
 Identities = 63/122 (51%), Positives = 85/122 (69%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct:   355 IGDEYFTFITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query:   115 EMAVSHVSASKD-LLNETERNLQDALHVARNIMLEPK-LVPGGGA--VEMAVS-HVSS-- 167
             EMAV+H    K   +   E+    A  VA+ + + P+ L+   GA  + +  S  VSS  
Sbjct:   415 EMAVAHALTEKSKAMTGVEQWPYRA--VAQALEVIPRTLIQNCGASTIRLLTSLRVSSFP 472

Query:   168 CF 169
             CF
Sbjct:   473 CF 474

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q3T0K2 CCT3 "T-complex protein 1 subunit gamma" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
 Identities = 49/71 (69%), Positives = 62/71 (87%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct:   355 IGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query:   115 EMAVSHVSASK 125
             EMAV+H    K
Sbjct:   415 EMAVAHALTEK 425

GO:0005886 "plasma membrane" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1RP17 CCT3 "T-complex protein 1 subunit gamma" [Sus scrofa (taxid:9823)]

 Score = 275 (101.9 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
 Identities = 49/71 (69%), Positives = 62/71 (87%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct:   357 IGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 416

Query:   115 EMAVSHVSASK 125
             EMAV+H    K
Sbjct:   417 EMAVAHALTEK 427

GO:0005886 "plasma membrane" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P49368 CCT3 "T-complex protein 1 subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF +IT+C++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct:   355 IGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query:   115 EMAVSHVSASK 125
             EMAV+H    K
Sbjct:   415 EMAVAHALTEK 425

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005874 "microtubule" evidence=IDA

GO:0005856 "cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:104708 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Mus musculus (taxid:10090)]

 Score = 272 (100.8 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF +IT+C++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct:   355 IGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query:   115 EMAVSHVSASK 125
             EMAV+H    K
Sbjct:   415 EMAVAHALTEK 425

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002199 "zona pellucida receptor complex" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IDA

GO:0005874 "microtubule" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0007339 "binding of sperm to zona pellucida" evidence=IDA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0097223 "sperm part" evidence=IDA

RGD|735038 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 48/71 (67%), Positives = 62/71 (87%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF +IT+C++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct:   355 IGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query:   115 EMAVSHVSASK 125
             EMAV+H    K
Sbjct:   415 EMAVAHALTEK 425

GO:0002199 "zona pellucida receptor complex" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005832 "chaperonin-containing T-complex" evidence=ISO

GO:0005874 "microtubule" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0007339 "binding of sperm to zona pellucida" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0097223 "sperm part" evidence=ISO

UNIPROTKB|E2RB79 CCT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 7.2e-31, Sum P(2) = 7.2e-31
 Identities = 49/71 (69%), Positives = 62/71 (87%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct:   355 IGDEYFTFITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 414

Query:   115 EMAVSHVSASK 125
             EMAV+H    K
Sbjct:   415 EMAVAHALTEK 425

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-020419-5 cct3 "chaperonin containing TCP1, subunit 3 (gamma)" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
 Identities = 47/66 (71%), Positives = 59/66 (89%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF ++TEC++PKACTILLRGASK++L E ERNLQDA+ V RN++L+P L+PGGGAV
Sbjct:   354 IGDEYFTFVTECKDPKACTILLRGASKEILAEVERNLQDAMQVCRNVLLDPYLLPGGGAV 413

Query:   115 EMAVSH 120
             EM VSH
Sbjct:   414 EMEVSH 419

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0046671 "negative regulation of retinal cell programmed cell death" evidence=IMP

GO:0048048 "embryonic eye morphogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000038552 AN3134 [Emericella nidulans (taxid:162425)]

 Score = 262 (97.3 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
 Identities = 46/65 (70%), Positives = 57/65 (87%)

Query:    55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             +GDEYF ++ +CQNPKACTILLRG SKD++NE ERNLQDA+ VARN++  P+L PGGGA+
Sbjct:   355 IGDEYFTFLRKCQNPKACTILLRGPSKDIINEIERNLQDAMSVARNVIFHPRLCPGGGAI 414

Query:   115 EMAVS 119
             EMAVS
Sbjct:   415 EMAVS 419

GO:0005634 "nucleus" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	1e-40
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	8e-38
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	2e-26
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	1e-20
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	2e-20
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	2e-20
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	6e-19
cd03333	209	cd03333, chaperonin_like, chaperonin_like superfam	1e-17
cd03338	515	cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type	4e-15
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	9e-15
TIGR02345	523	TIGR02345, chap_CCT_eta, T-complex protein 1, eta	9e-15
cd03339	526	cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty	2e-14
TIGR02343	532	TIGR02343, chap_CCT_epsi, T-complex protein 1, eps	2e-13
PTZ00212	533	PTZ00212, PTZ00212, T-complex protein 1 subunit be	9e-13
cd03336	517	cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type	2e-12
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	4e-11
TIGR02347	531	TIGR02347, chap_CCT_zeta, T-complex protein 1, zet	5e-11
TIGR02341	518	TIGR02341, chap_CCT_beta, T-complex protein 1, bet	7e-11
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	1e-10
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	1e-10
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	1e-10
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	1e-08
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	2e-08
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	5e-08
TIGR02346	531	TIGR02346, chap_CCT_theta, T-complex protein 1, th	5e-08
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	7e-05
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	1e-04
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	2e-04
TIGR02341	518	TIGR02341, chap_CCT_beta, T-complex protein 1, bet	7e-04
cd03334	261	cd03334, Fab1_TCP, TCP-1 like domain of the eukary	7e-04
TIGR02346	531	TIGR02346, chap_CCT_theta, T-complex protein 1, th	8e-04

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score =  143 bits (364), Expect = 1e-40
 Identities = 54/65 (83%), Positives = 60/65 (92%)

Query: 56  GDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVE 115
           GDEYF +ITEC++PKACTILLRGASKD+LNE ERNLQDA+ VARNI+L PKLVPGGGA E
Sbjct: 311 GDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATE 370

Query: 116 MAVSH 120
           MAVSH
Sbjct: 371 MAVSH 375

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score =  136 bits (345), Expect = 8e-38
 Identities = 53/72 (73%), Positives = 62/72 (86%)

Query: 54  LLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
            +GDEYF + TEC++PKACTILLRGASKD+LNE ERNLQDA+ VARN++LEPKL+PGGGA
Sbjct: 350 KIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGA 409

Query: 114 VEMAVSHVSASK 125
            EMAVS   A K
Sbjct: 410 TEMAVSVYLAKK 421

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score =  104 bits (263), Expect = 2e-26
 Identities = 30/67 (44%), Positives = 43/67 (64%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDE + +I  C+  K  TILLRGA++  L+E ER+L DAL   R  + +  +VPGGGA 
Sbjct: 296 IGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAA 355

Query: 115 EMAVSHV 121
           E+ +S  
Sbjct: 356 EIELSKA 362

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G++   +I  C + K  TILLRGA+   L+E ER ++DAL+  +  + +  +VPGGGA 
Sbjct: 311 IGEDKTTFIEGCLSGKVATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAA 370

Query: 115 EMAVSHV 121
           E+ +S  
Sbjct: 371 ELELSRA 377

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 88.5 bits (220), Expect = 2e-20
 Identities = 29/65 (44%), Positives = 47/65 (72%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GD+   ++  C+NPKA TILLRG ++ +++E ER L+DAL V  + + + K+V GGGAV
Sbjct: 347 VGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAV 406

Query: 115 EMAVS 119
           E+ ++
Sbjct: 407 EIELA 411

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 88.4 bits (220), Expect = 2e-20
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 35  IDSSIVTLNHWLCSSQDACLLGDEYFCYITECQN--PKACTILLRGASKDLLNETERNLQ 92
            D + + L        +    GD     + E +       TIL+RGA++  L+E ER ++
Sbjct: 322 KDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIE 381

Query: 93  DALHVARNIMLEPKLVPGGGAVEMAVSH 120
           DAL+V R  + E K+VPGGGA E+  + 
Sbjct: 382 DALNVVRAAVEEGKIVPGGGAAEIEAAL 409

Length = 524

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 84.0 bits (208), Expect = 6e-19
 Identities = 30/65 (46%), Positives = 49/65 (75%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G++   ++  C+NPKA TILLRG ++ +++E ER+LQDALHV  + + + K+V GGGAV
Sbjct: 350 VGEDKMVFVEGCKNPKAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAV 409

Query: 115 EMAVS 119
           E+ ++
Sbjct: 410 EIEIA 414

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily

 Score = 77.1 bits (191), Expect = 1e-17
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLE 104
           +G+E   +I  C+  KA TILLRGA++  L+E +R+L DAL   R  + E
Sbjct: 160 IGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains. Length = 209

>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 11/106 (10%)

Query: 55  LGDEYFCYITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
           LGD     IT  +NP K  TIL+RG++K +L+E ER+L DAL V R ++ +  L+PGGGA
Sbjct: 345 LGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGA 404

Query: 114 VEMAVSH-VSASKDLLNETE----RNLQDALHV-----ARNIMLEP 149
            E+ ++  +S     L   E    R   DAL V     A N  L P
Sbjct: 405 PEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNP 450

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score = 71.9 bits (177), Expect = 9e-15
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G E +   T C   K CTI+LRG ++  + E ER+L DA+ + R  +    +V GGGA+
Sbjct: 349 VGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAI 408

Query: 115 EMAVS 119
           EM +S
Sbjct: 409 EMELS 413

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit

 Score = 71.7 bits (176), Expect = 9e-15
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G E +   T C + K CTI+LRG ++  + E ER+L DA+ + R  +   K+V GGGA+
Sbjct: 351 IGSERYNLFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAI 410

Query: 115 EMAVS 119
           EM +S
Sbjct: 411 EMELS 415

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523

>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 62  YITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
            I  C N KA TI +RG +K ++ E +R+L DAL V RN++ + ++V GGGA E++ S
Sbjct: 364 VIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCS 421

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526

>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 10/98 (10%)

Query: 62  YITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS-H 120
            I +C+N KA TI +RG +K ++ E +R++ DAL V RN++ + ++V GGGA E++ S  
Sbjct: 368 VIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLA 427

Query: 121 VSASKDLLNETE----RNLQDALHV-----ARNIMLEP 149
           VS   D  +  E    R   DAL       A N  L+P
Sbjct: 428 VSQEADKYSGVEQYAIRAFADALETIPMALAENSGLDP 465

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532

>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional

 Score = 66.2 bits (162), Expect = 9e-13
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query: 47  CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
           C   +  ++G++     + C   +ACTI+LRGAS  +L+E ER+L DAL V    + + +
Sbjct: 348 CDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTR 407

Query: 107 LVPGGGAVEMAVSH 120
           +V GGG  EM +++
Sbjct: 408 VVLGGGCSEMLMAN 421

Length = 533

>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 47  CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
           C   +  ++G++     +     +ACTI+LRGAS+ +L+E ER+L DAL V    + + +
Sbjct: 336 CKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTR 395

Query: 107 LVPGGGAVEMAVSHVSASKDLLNETE 132
           +V GGG  EM ++   A ++L  +T 
Sbjct: 396 VVLGGGCSEMLMAK--AVEELAKKTP 419

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 22/65 (33%), Positives = 41/65 (63%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LG+E + +I   +NPK+CTIL++G +   + + +  ++D L   +N + +  +VPG GA 
Sbjct: 313 LGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAF 372

Query: 115 EMAVS 119
           E+A+ 
Sbjct: 373 EVALY 377

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 22/65 (33%), Positives = 41/65 (63%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G+E + +I E +NPK+CTIL++G +   + + +  ++D L   +N + +  +VPG GA 
Sbjct: 356 IGEEKYTFIEEVKNPKSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAF 415

Query: 115 EMAVS 119
           E+A  
Sbjct: 416 EIAAY 420

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 27/74 (36%), Positives = 44/74 (59%)

Query: 47  CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
           C   +  ++G++     +  +  +ACTI+LRGA++ +L+E ER+L DAL V    + E +
Sbjct: 336 CDLIEEIMIGEDKLLKFSGVKAGEACTIVLRGATQQILDEAERSLHDALCVLSQTVKESR 395

Query: 107 LVPGGGAVEMAVSH 120
            V GGG  EM +S 
Sbjct: 396 TVLGGGCAEMLMSK 409

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 63  ITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
           IT  QN  K  T+++RG++K +++E ER+L DAL V R ++ +  L+ GGGA E+ ++
Sbjct: 354 ITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIA 411

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GD+    I   +   + +I+LRGA+  +L+E ER+L DAL V +  +    +VPGGGAV
Sbjct: 348 IGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAV 407

Query: 115 EMAVS 119
           E A+S
Sbjct: 408 ETALS 412

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 55  LGDEYFCYITEC-QNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
           +GD       +  ++ K  TI+LRGA++++L++ ER + D ++V +++  + + VPG GA
Sbjct: 299 IGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGA 358

Query: 114 VEMAVSH 120
            E+ ++ 
Sbjct: 359 TEIELAK 365

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           + D+    I   +   + +I+LRGA+  +L+E ER+L DAL V +  +    +VPGGGAV
Sbjct: 352 IADDECILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAV 411

Query: 115 EMAVS 119
           E A+S
Sbjct: 412 EAALS 416

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 8  PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
          PVLVL+ NTKR+SGRK QL NIQA K +   I T
Sbjct: 1  PVLVLNQNTKRESGRKAQLGNIQAAKTVADVIRT 34

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 22/34 (64%), Positives = 25/34 (73%)

Query: 8  PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
          PVLVL+ NTKR+SGRK QL NIQA K +   I T
Sbjct: 1  PVLVLNQNTKRESGRKAQLSNIQAAKAVADIIRT 34

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 18/56 (32%), Positives = 38/56 (67%)

Query: 65  ECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 120
           E  + +  TI+LRG++K+LL++ ER + D ++V + ++ + + +PG GA E+ ++ 
Sbjct: 358 ENGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELAS 413

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 12/42 (28%), Positives = 29/42 (69%)

Query: 123 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 164
           A++++L++ ER + D ++V +++  + + VPG GA E+ ++ 
Sbjct: 324 ATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAK 365

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 163
           +L+E ER+L DAL V +  +    +VPGGGAVE A+S
Sbjct: 380 MLDEMERSLHDALCVVKRTLESNSVVPGGGAVEAALS 416

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 29/41 (70%)

Query: 123 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 163
           ++K +++E ER+L DAL V R ++ +  L+ GGGA E+ ++
Sbjct: 371 SNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIA 411

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 123 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 164
           A++ +L+E ER+L DAL V    + E + V GGG  EM +S 
Sbjct: 368 ATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSK 409

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518

>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 60  FCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLE 104
             +   C     CTILLRG   + L + +R ++  +  A ++ LE
Sbjct: 209 LMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLE 253

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. Length = 261

>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 12/42 (28%), Positives = 29/42 (69%)

Query: 123 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 164
           ++K+LL++ ER + D ++V + ++ + + +PG GA E+ ++ 
Sbjct: 372 STKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELAS 413

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG0361|consensus	543		100.0
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	100.0
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	100.0
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	100.0
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	100.0
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	100.0
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	100.0
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	100.0
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	100.0
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	100.0
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	100.0
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	100.0
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	100.0
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	100.0
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	100.0
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	100.0
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	100.0
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	100.0
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	100.0
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	99.98
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	99.98
KOG0363|consensus	527		99.98
KOG0364|consensus	527		99.97
KOG0359|consensus	520		99.97
KOG0357|consensus	400		99.97
PRK12849	542	groEL chaperonin GroEL; Reviewed	99.96
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	99.96
PRK00013	542	groEL chaperonin GroEL; Reviewed	99.96
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	99.96
PRK12852	545	groEL chaperonin GroEL; Reviewed	99.96
PRK12850	544	groEL chaperonin GroEL; Reviewed	99.96
PRK12851	541	groEL chaperonin GroEL; Reviewed	99.95
PTZ00114	555	Heat shock protein 60; Provisional	99.95
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	99.95
PRK14104	546	chaperonin GroEL; Provisional	99.95
KOG0358|consensus	534		99.95
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	99.95
CHL00093	529	groEL chaperonin GroEL	99.94
KOG0362|consensus	537		99.94
KOG0360|consensus	545		99.94
PLN03167	600	Chaperonin-60 beta subunit; Provisional	99.92
cd03334	261	Fab1_TCP TCP-1 like domain of the eukaryotic phosp	99.67
cd03333	209	chaperonin_like chaperonin_like superfamily. Chape	99.61
KOG0357|consensus	400		99.19
KOG0358|consensus	534		98.85
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	98.82
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	98.82
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	98.8
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	98.8
CHL00093	529	groEL chaperonin GroEL	98.79
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	98.79
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	98.78
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	98.77
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	98.77
KOG0361|consensus	543		98.76
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	98.75
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	98.75
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	98.74
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	98.7
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	98.7
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	98.7
KOG0363|consensus	527		98.69
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	98.69
PTZ00114	555	Heat shock protein 60; Provisional	98.68
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	98.68
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	98.68
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	98.67
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	98.64
PRK12849	542	groEL chaperonin GroEL; Reviewed	98.63
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	98.62
PRK12851	541	groEL chaperonin GroEL; Reviewed	98.6
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	98.6
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	98.6
PRK12850	544	groEL chaperonin GroEL; Reviewed	98.59
PRK00013	542	groEL chaperonin GroEL; Reviewed	98.56
PRK12852	545	groEL chaperonin GroEL; Reviewed	98.55
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	98.55
PRK14104	546	chaperonin GroEL; Provisional	98.48
PLN03167	600	Chaperonin-60 beta subunit; Provisional	98.4
KOG0362|consensus	537		98.36
KOG0364|consensus	527		98.27
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	98.08
KOG0360|consensus	545		97.96
KOG0230|consensus	1598		97.86
KOG0356|consensus	550		97.62
KOG0359|consensus	520		97.08
KOG0356|consensus	550		93.42

>KOG0361|consensus

Probab=100.00  E-value=2.6e-38  Score=284.70  Aligned_cols=175  Identities=21%  Similarity=0.314  Sum_probs=164.4

Q ss_pred             hcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCe
Q psy2833          30 QAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK  106 (216)
Q Consensus        30 ~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~  106 (216)
                      +||++++++..++.+   |.|..||++++|+++|.+|++|+..++||++|||+.+++++|+|||+|||+++++.++++..
T Consensus       325 acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~  404 (543)
T KOG0361|consen  325 ACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS  404 (543)
T ss_pred             hcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence            799999999999886   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEE
Q psy2833         107 LVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTL  181 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i  181 (216)
                      +|+|||++||+||++||+|+     +.+....+|++||++||+.|++|+   |.++++++.  +|++.  |..|..||||
T Consensus       405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~Na---GfDa~~iln--kLR~r--HA~G~~w~Gv  477 (543)
T KOG0361|consen  405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNA---GFDATNILN--KLRQR--HAQGEKWYGV  477 (543)
T ss_pred             EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhc---CCcHHHHHH--HHHHH--hhcCCceeee
Confidence            99999999999999999998     999999999999999999999999   889999885  45554  3458999999


Q ss_pred             eeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833         182 GLHAGGPGLIPGGAEVFFGSVLGVRGALSLV  212 (216)
Q Consensus       182 ~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  212 (216)
                      |..++.++|+ -+.+|||+++|+-+++.++-
T Consensus       478 di~~e~i~dn-~~~~VwEP~~VK~Nai~aat  507 (543)
T KOG0361|consen  478 DINTEGIADN-FEKFVWEPSIVKINAITAAT  507 (543)
T ss_pred             eecccchhhH-HHhhccChHHHHHHHHHHHH
Confidence            9999999987 57899999999999988763

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=100.00  E-value=4.8e-34  Score=270.45  Aligned_cols=196  Identities=21%  Similarity=0.286  Sum_probs=173.4

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL   83 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~   83 (216)
                      .++++++.-.+++    ++....+|||+++++++++++   |+|+.|++..+|+++|++|++|+++++|||+|||+|+++
T Consensus       297 ~~I~av~~v~~~~----L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~  372 (517)
T cd03336         297 AGIMAIEHADFDG----VERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQI  372 (517)
T ss_pred             CCcEEEecCCHHH----HHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHH
Confidence            4677777766655    444556799999999999886   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833          84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV  158 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~  158 (216)
                      ++|+||+++||++++++++++|++|||||++|+++|.+|++++     +.+.++++|++||+++|++|++|+   |.++.
T Consensus       373 l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~Na---G~d~~  449 (517)
T cd03336         373 LDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNA---GYDSA  449 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhC---CCCHH
Confidence            9999999999999999999999999999999999999999985     799999999999999999999999   77888


Q ss_pred             HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      |+..  .|++.+  ..+..++|+|+.+|.+.|+ ...||||+..++.+++++++.+
T Consensus       450 ~~l~--~l~~~h--~~~~~~~Gid~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~e~  500 (517)
T cd03336         450 ELVA--QLRAAH--YNGNTTAGLDMRKGTVGDM-KELGITESFKVKRQVLLSASEA  500 (517)
T ss_pred             HHHH--HHHHHH--HcCCCceeeecCCCCccch-hhcCceecHHHHHHHHHHHHHH
Confidence            7765  344332  3456689999999999987 5899999999999998887653

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=100.00  E-value=3.5e-34  Score=269.54  Aligned_cols=194  Identities=22%  Similarity=0.273  Sum_probs=170.6

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL   84 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l   84 (216)
                      .+++++...+++    ++....+|||+++++++++++   |+|+.|+++.+|+++|+||++|++++.|||+|||+|++++
T Consensus       267 ~I~av~~~~~~~----l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l  342 (484)
T cd03342         267 GILALRRAKRRN----MERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTI  342 (484)
T ss_pred             CCeEEEeCCHHH----HHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHH
Confidence            478888644443    444555799999999999986   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833          85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE  159 (216)
Q Consensus        85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E  159 (216)
                      +|+||+++||++++++++++|++|||||++|+++|.+|++++     ..+.++++|++||+.+|++|++|+   |.++.|
T Consensus       343 ~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~  419 (484)
T cd03342         343 TQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENS---GLDVQE  419 (484)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHH
Confidence            999999999999999999999999999999999999999985     899999999999999999999999   778887


Q ss_pred             HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ...  .|+.  .|..+..++|+|+.+|.+.|+ .+.||||+..++.+++++|+-
T Consensus       420 ~l~--~l~~--~h~~~~~~~Gid~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~e  468 (484)
T cd03342         420 TLV--KLQD--EYAEGGQVGGVDLDTGEPMDP-ESEGIWDNYSVKRQILHSATV  468 (484)
T ss_pred             HHH--HHHH--HHHccCCceeeeCCCCcccch-hhcCcEEcHHHHHHHHHHHHH
Confidence            765  2332  222345689999999999987 589999999999999988764

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=100.00  E-value=8.7e-34  Score=269.64  Aligned_cols=182  Identities=21%  Similarity=0.259  Sum_probs=163.4

Q ss_pred             hhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHHH
Q psy2833          24 VQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARN  100 (216)
Q Consensus        24 ~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~  100 (216)
                      ++...++|||+++++++++++   |+|+.|+++.+|+++|++|++|++++.|||+|||+|+++++|+||+++||++++++
T Consensus       322 le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~  401 (531)
T TIGR02347       322 MERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKN  401 (531)
T ss_pred             HHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence            444455799999999999876   99999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCC
Q psy2833         101 IMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLG  175 (216)
Q Consensus       101 ~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g  175 (216)
                      ++++|++|||||++|+++|.+|++++     +.+.++++|++||+.+|++|++|+   |.++.|...  .|+.  .+.++
T Consensus       402 ~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~Na---G~d~~~vl~--~l~~--~~~~~  474 (531)
T TIGR02347       402 AIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENS---GLDAQDTLV--KLED--EHDEG  474 (531)
T ss_pred             HhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHH--HHHcc
Confidence            99999999999999999999999985     899999999999999999999999   778887765  2332  23345


Q ss_pred             ceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         176 RVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       176 ~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ...+|+|+.+|.+.|+ .+.||||+..++.+++++++-
T Consensus       475 ~~~~Gid~~~g~~~d~-~~~gV~Dp~~vk~~al~~A~e  511 (531)
T TIGR02347       475 GEVVGVDLETGEPIDP-EIKGIWDNYRVKKQLIQSATV  511 (531)
T ss_pred             CCceeeeccCCCccch-hhccCEEcHHHHHHHHHHHHH
Confidence            5689999999999887 579999999999999888764

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=100.00  E-value=8.9e-34  Score=269.58  Aligned_cols=196  Identities=21%  Similarity=0.293  Sum_probs=171.0

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL   83 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~   83 (216)
                      +.++++++-++.+    ++....+|||+++++++++++   |+|+.|+++.+|+++|++|++|+.+++|||+|||+|+++
T Consensus       309 ~~I~avr~v~~~~----l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~  384 (533)
T PTZ00212        309 AGIMAIEHADFDG----MERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHI  384 (533)
T ss_pred             CCCEEEecCCHHH----HHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhH
Confidence            4577777433333    334555799999999999876   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833          84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV  158 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~  158 (216)
                      ++|+||+++||++++++++++|++|||||++|+++|.+|++++     +.+.++++|++||+++|++|++|+   |.++.
T Consensus       385 l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~Na---G~d~~  461 (533)
T PTZ00212        385 LDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNG---GYDSA  461 (533)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhC---CCCHH
Confidence            9999999999999999999999999999999999999999885     899999999999999999999999   77888


Q ss_pred             HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      |+..  .|+..+  .++..++|+|+.+|.+.|+ ...||||+..++.+++++|+.+
T Consensus       462 ~vl~--~l~~~h--~~~~~~~G~d~~~g~i~d~-~~~gI~dp~~vk~~al~~A~e~  512 (533)
T PTZ00212        462 ELVS--KLRAEH--YKGNKTAGIDMEKGTVGDM-KELGITESYKVKLSQLCSATEA  512 (533)
T ss_pred             HHHH--HHHHHH--HccCCccceeccCCcccch-hhccceecHHHHHHHHHHHHHH
Confidence            8765  233322  2345689999999999987 5899999999999999888653

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=100.00  E-value=1.1e-33  Score=268.22  Aligned_cols=196  Identities=34%  Similarity=0.448  Sum_probs=170.8

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ce-eceEEEEEECCeEEEEEeecCCCceEEEEEeCCChh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WL-CSSQDACLLGDEYFCYITECQNPKACTILLRGASKD   82 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~-c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~   82 (216)
                      .+++++++..+++.    ++...+|||+++++++++++   |+ |+.|+++++|+++|++|++|+++++|||+|||+|++
T Consensus       303 ~~I~av~~v~~~~L----erIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~  378 (525)
T TIGR02344       303 ANISAIRRVRKTDN----NRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKD  378 (525)
T ss_pred             CCceEEecCCHHHH----HHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHH
Confidence            56777774444443    33455799999999999986   87 999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||+++++++++++++|||||++|+++|.+|++++     ..++++++|++||+.+|++|++|+   |.++
T Consensus       379 ~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~Na---G~d~  455 (525)
T TIGR02344       379 VLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNC---GVNV  455 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
Confidence            99999999999999999999999999999999999999999985     789999999999999999999999   7788


Q ss_pred             hHHHHHHHHHHhhhhcCC-ceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLG-RVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g-~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      .|...  .|+..+  .++ ..++|+|+.+|.+.|+ ...||||+..++.+++++++.+
T Consensus       456 ~~~l~--~l~~~h--~~~~~~~~Gid~~~g~~~d~-~~~gV~dp~~vk~~~l~~A~e~  508 (525)
T TIGR02344       456 IRTLT--ELRAKH--AQEGNCTWGIDGETGKIVDM-KEKGIWEPLAVKLQTYKTAIES  508 (525)
T ss_pred             HHHHH--HHHHHH--HccCCCeEeEECCCCccccc-hhccceecHHHHHHHHHHHHHH
Confidence            88765  333332  223 5689999999999987 5899999999999998887643

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=100.00  E-value=1.3e-33  Score=267.65  Aligned_cols=196  Identities=21%  Similarity=0.268  Sum_probs=172.2

Q ss_pred             CCcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChh
Q psy2833           6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKD   82 (216)
Q Consensus         6 ~~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~   82 (216)
                      ...+++++.-.+++    ++....+|||+++++++++++   |+|+.|+++.+|+++|++|++|++++.|||+|||+|++
T Consensus       297 ~~~I~~v~~~~~~~----l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~  372 (519)
T TIGR02341       297 DAGVMAIEHADFEG----IERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQ  372 (519)
T ss_pred             HCCcEEEecCCHHH----HHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHH
Confidence            35677777666443    444455799999999999886   99999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||+++++++++|+++|||||++|+++|.+|++++     +.+.++++|++||+++|++|++|+   |.++
T Consensus       373 ~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~Na---G~d~  449 (519)
T TIGR02341       373 ILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNA---GFDS  449 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHC---CCCH
Confidence            99999999999999999999999999999999999999999885     799999999999999999999999   7788


Q ss_pred             hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      .|+..  .|+..+  ..+..++|+|..+|.+.|+ .+.||||+..++.+++++|+-
T Consensus       450 ~~~l~--~l~~~h--~~~~~~~Gid~~~g~i~d~-~~~gI~dp~~vk~~~l~~A~e  500 (519)
T TIGR02341       450 AELVA--QLRAAH--YNGNHTMGLDMEEGEIADM-RKLGIIESYKVKRAVVSSAAE  500 (519)
T ss_pred             HHHHH--HHHHHH--HcCCCccceecCCCcccch-hhccceEcHHHHHHHHHHHHH
Confidence            88764  343332  2345689999999999987 479999999999999998864

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=100.00  E-value=3.2e-33  Score=264.96  Aligned_cols=195  Identities=20%  Similarity=0.298  Sum_probs=169.4

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL   84 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l   84 (216)
                      .++++.+-.+++    +++...+|||+++++++++.+   |+|+.|+++++|+++|++|++|+.++.|||+|||+|++++
T Consensus       303 ~I~~~~~v~~~~----l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l  378 (522)
T cd03340         303 DIFCAGRVPEED----LKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFI  378 (522)
T ss_pred             CcEEEEeCCHHH----HHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHH
Confidence            455665444433    444455799999999999986   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833          85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE  159 (216)
Q Consensus        85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E  159 (216)
                      +|+||+++||++++++++++|++|||||++|++++.+|++++     +.+.++++|++||+.+|++|++|+   |.++.|
T Consensus       379 ~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~Na---G~d~~~  455 (522)
T cd03340         379 EEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNA---GFDATD  455 (522)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHH
Confidence            999999999999999999999999999999999999999985     789999999999999999999999   778877


Q ss_pred             HHHHHHHHHhhhhcCCc-eEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         160 MAVSHVSSCFQDNLLGR-VVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       160 ~~~s~~L~~~a~~~~g~-~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      ...  .|+..+  .++. .++|+|+.+|.+.|+ .+.||||+..++.+++++++.+
T Consensus       456 ~l~--~l~~~h--~~~~~~~~Gid~~~g~i~d~-~~~gV~dp~~vk~~~i~~A~e~  506 (522)
T cd03340         456 ILN--KLRQKH--AQGGGKWYGVDINNEGIADN-FEAFVWEPSLVKINALTAATEA  506 (522)
T ss_pred             HHH--HHHHHH--HccCCCeeeeeCCCCcccch-hhcCceEcHHHHHHHHHHHHHH
Confidence            664  333332  2344 589999999999987 6899999999999999888753

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=100.00  E-value=5.7e-33  Score=260.55  Aligned_cols=196  Identities=19%  Similarity=0.252  Sum_probs=172.3

Q ss_pred             CCcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCC-CceEEEEEeCCCh
Q psy2833           6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQN-PKACTILLRGASK   81 (216)
Q Consensus         6 ~~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~   81 (216)
                      ..++++++...+++    ++.....||++++++++++++   |+|+.|+++++|+++|++|++|++ ++.|||+|||+|+
T Consensus       251 ~~~I~av~~~~~~~----Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~  326 (472)
T cd03341         251 KYGIMVIKINSKFE----LRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQ  326 (472)
T ss_pred             HCCeEEEEeCCHHH----HHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCH
Confidence            35788887766555    455556799999999999876   999999999999999999999987 8999999999999


Q ss_pred             hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833          82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG  156 (216)
Q Consensus        82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg  156 (216)
                      ++++|.||+++||++++++++++|++|||||++|++++.+|++++     ..+.++++|++||+.+|++|++|+   |.+
T Consensus       327 ~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~Na---G~d  403 (472)
T cd03341         327 NILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENA---GLD  403 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHC---CCC
Confidence            999999999999999999999999999999999999999999885     889999999999999999999999   778


Q ss_pred             hhHHHHHHHHHHhhhhcCCceEEEEeeccC--CCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAG--GPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~--~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      +.|+..  .|+..+  .++..++|+|+.+|  .+.|+ .+.||||+..++.+++++++.
T Consensus       404 ~~~~~~--~l~~~h--~~~~~~~Gid~~~g~~~~~d~-~~~gI~dp~~vk~~~l~~A~e  457 (472)
T cd03341         404 ATEVLS--ELYAAH--QKGNKSAGVDIESGDEGTKDA-KEAGIFDHLATKKWAIKLATE  457 (472)
T ss_pred             HHHHHH--HHHHHH--HccCCeeeeeccCCCCCccCh-hhccceecHHHHHHHHHHHHH
Confidence            877654  343322  23455899999999  99987 689999999999999988764

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=100.00  E-value=4.4e-33  Score=264.34  Aligned_cols=197  Identities=22%  Similarity=0.219  Sum_probs=169.0

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccC---------cceeceEEEEEECCeEEEEEeecCCCceEEEEEe
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLN---------HWLCSSQDACLLGDEYFCYITECQNPKACTILLR   77 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~---------~g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllr   77 (216)
                      .|++++++..+++    ++....+|||++++++.+++         -|+|+.|+++++|+++|++|++|+++++|||+||
T Consensus       295 ~~I~~v~~v~~~~----lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllr  370 (527)
T cd03335         295 AGAMAVRRVKKED----LRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILR  370 (527)
T ss_pred             CCcEEEEeCCHHH----HHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEe
Confidence            5778888555544    33345589999999997652         2999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCccc
Q psy2833          78 GASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLV  152 (216)
Q Consensus        78 G~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v  152 (216)
                      |+|+++++|+||+++||++++++++++|++|||||++|+++|.+|++++     ..+.++++|++||+.+|++|++|+  
T Consensus       371 G~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~Na--  448 (527)
T cd03335         371 GANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNA--  448 (527)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence            9999999999999999999999999999999999999999999999885     789999999999999999999999  


Q ss_pred             CCCChhHHHHHHHHHHhhhhcC------CceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         153 PGGGAVEMAVSHVSSCFQDNLL------GRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       153 ~Ggga~E~~~s~~L~~~a~~~~------g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                       |.++.|...  .|+..+....      +..++|+|..+|.+.|+ .+.||||+..++.+++++|+.
T Consensus       449 -G~d~~~~~~--~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~-~~~gV~dp~~~k~~~i~~A~e  511 (527)
T cd03335         449 -AKDATELVA--KLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDN-LEAGVLEPTVSKIKSLKFATE  511 (527)
T ss_pred             -CCCHHHHHH--HHHHHHHhcCCccccccCceEeEECCCCcccch-hhccceecHHHHHHHHHHHHH
Confidence             778887654  3333322111      24579999999999987 589999999999999888764

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=100.00  E-value=4.4e-33  Score=263.94  Aligned_cols=196  Identities=22%  Similarity=0.257  Sum_probs=170.5

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCC-ceEEEEEeCCChh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNP-KACTILLRGASKD   82 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~   82 (216)
                      .+++++++-.+++    ++.....|||+++++++++++   |+|+.|+++++|+++|++|++|+++ +.|||+|||||++
T Consensus       299 ~~I~av~~v~~~~----LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~  374 (517)
T TIGR02342       299 MKIMVVKDIEREE----VEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKL  374 (517)
T ss_pred             CCceEEecCCHHH----HHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHH
Confidence            6777887333333    333445799999999999886   9999999999999999999999884 8999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||+++++++++++++|||||++|+++|.+|++++     ..+.++++|++||+.+|++|++|+   |.++
T Consensus       375 ~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~Na---G~d~  451 (517)
T TIGR02342       375 VIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENA---GLNP  451 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHc---CCCH
Confidence            99999999999999999999999999999999999999999985     789999999999999999999999   7788


Q ss_pred             hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      .|+..  .|+..+  .++..++|+|+.+|.+.|+ .+.||||++.++.+++++|+.+
T Consensus       452 ~~~l~--~l~~~h--~~~~~~~Gid~~~g~i~d~-~~~gI~dp~~vk~~ai~~A~e~  503 (517)
T TIGR02342       452 IDVVT--ELRNRH--ANGEKYAGISVRKGGITDM-LEEEVLQPLLVTTSAVTLASET  503 (517)
T ss_pred             HHHHH--HHHHHH--HcCCCccceecCCCCccch-hhccceEcHHHHHHHHHHHHHH
Confidence            88765  333332  2456689999999999987 5899999999999999988753

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=100.00  E-value=4.8e-33  Score=261.52  Aligned_cols=196  Identities=35%  Similarity=0.450  Sum_probs=170.0

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ce-eceEEEEEECCeEEEEEeecCCCceEEEEEeCCChh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WL-CSSQDACLLGDEYFCYITECQNPKACTILLRGASKD   82 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~-c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~   82 (216)
                      .+++++++-.+++    +++...+|||+++++++++++   |+ |+.++++++|+++|+||++|+++++|||+|||+|++
T Consensus       262 ~~I~~v~~v~~~~----L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~  337 (480)
T cd03337         262 AGITALRRVRKTD----NNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKD  337 (480)
T ss_pred             CCcEEEEeCCHHH----HHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHH
Confidence            4677887533333    344455799999999999986   88 788899999999999999999999999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||++++++++++|++|||||++|+++|.+|++++     +.++++++|++||+.+|++|++|+   |.++
T Consensus       338 ~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~Na---G~d~  414 (480)
T cd03337         338 VLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNC---GANV  414 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCH
Confidence            99999999999999999999999999999999999999999876     799999999999999999999999   7788


Q ss_pred             hHHHHHHHHHHhhhhcCC-ceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLG-RVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g-~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      .|...  .|+..  |.++ ..++|+|..+|.+.|+ .+.||||+..++.+++++++..
T Consensus       415 ~~~l~--~l~~~--h~~~~~~~~Gid~~~g~i~d~-~~~gV~dp~~vk~~~l~~A~e~  467 (480)
T cd03337         415 IRTLT--ELRAK--HAQGENSTWGIDGETGDIVDM-KELGIWDPLAVKAQTYKTAIEA  467 (480)
T ss_pred             HHHHH--HHHHH--HHccCCCeECeeccCCCcccc-hhccCeEcHHHHHHHHHHHHHH
Confidence            88765  33332  2233 5689999999999987 5799999999999999888653

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03343 cpn60 cpn60 chaperonin family

Probab=100.00  E-value=7.2e-33  Score=262.08  Aligned_cols=196  Identities=24%  Similarity=0.280  Sum_probs=169.4

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL   83 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~   83 (216)
                      +.++++++-.++    .+++...+|||+++++++++++   |+|+.|+++++|+++|++|++|++++.|||+|||||+.+
T Consensus       300 ~gI~~v~~v~~~----~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~  375 (517)
T cd03343         300 AGILAVRRVKKS----DMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHV  375 (517)
T ss_pred             CCcEEEEeCCHH----HHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHH
Confidence            456677643333    3344455799999999999976   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833          84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV  158 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~  158 (216)
                      ++|+||+++||++++++++++|++|||||++|+++|..|++++     ..+.++++|++||+.+|++|++|+   |.++.
T Consensus       376 l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~Na---G~d~~  452 (517)
T cd03343         376 VDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENA---GLDPI  452 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCHH
Confidence            9999999999999999999999999999999999999999885     789999999999999999999999   77887


Q ss_pred             HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      |...  .|+..  |..+..++|+|+.+|.+.|+ ...||||+..++.+++++++-+
T Consensus       453 ~~~~--~l~~~--h~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~e~  503 (517)
T cd03343         453 DTLV--ELRAA--HEKGNKNAGLDVYTGEVVDM-LEKGVIEPLRVKKQAIKSATEA  503 (517)
T ss_pred             HHHH--HHHHH--HHccCCceeeecCCCCccch-hhcCceecHHHHHHHHHHHHHH
Confidence            7664  23322  22345689999999999887 6899999999999999887643

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=100.00  E-value=7.3e-33  Score=262.33  Aligned_cols=195  Identities=26%  Similarity=0.311  Sum_probs=168.4

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL   83 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~   83 (216)
                      +.++++++-.+    ..++....+|||+++++++++.+   |+|+.|+++++|+++|++|++|.++.+|||+|||||+.+
T Consensus       303 ~gI~~v~~v~~----~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~  378 (519)
T TIGR02339       303 AGILAVRRVKK----SDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHV  378 (519)
T ss_pred             CCCEEEecCCH----HHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHH
Confidence            45666663332    33444455799999999999876   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833          84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV  158 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~  158 (216)
                      ++|+||+++||++++++++++|++|||||++|+++|.+|++++     ..+.++++|++||+.+|++|++|+   |.++.
T Consensus       379 l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~d~~  455 (519)
T TIGR02339       379 VDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENA---GLDPI  455 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCHH
Confidence            9999999999999999999999999999999999999999885     789999999999999999999999   77888


Q ss_pred             HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ++..  .|+..  |..+..++|+|+.+|.+.|+ .+.||||+..++.++++.|+.
T Consensus       456 ~~l~--~l~~~--h~~~~~~~Gid~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~e  505 (519)
T TIGR02339       456 DALV--ELRAK--HEKGNKNAGINVFTGEIEDM-LELGVIEPLRVKEQAIKSATE  505 (519)
T ss_pred             HHHH--HHHHH--HHccCCceeEEcCCCCccch-hhccceEcHHHHHHHHHHHHH
Confidence            7765  23322  22345689999999999987 589999999999998888764

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=100.00  E-value=9.9e-33  Score=261.91  Aligned_cols=197  Identities=22%  Similarity=0.265  Sum_probs=169.4

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECC--eEEEEEeecCCCceEEEEEeCCCh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD--EYFCYITECQNPKACTILLRGASK   81 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG~t~   81 (216)
                      ..+++++.-.+++    +++...+|||+++++++++.+   |+|+.|+++++|+  ++|+||++|+++++|||+|||+|+
T Consensus       308 ~~I~av~~v~~~~----LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~  383 (526)
T cd03339         308 NGLPAVRWVGGVE----IELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNK  383 (526)
T ss_pred             CCCEEEEeCCHHH----HHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCH
Confidence            3456666643333    555556799999999999986   9999999999996  689999999999999999999999


Q ss_pred             hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833          82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG  156 (216)
Q Consensus        82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg  156 (216)
                      ++++|+||+++||++++++++++|++|||||++|+++|..|++++     ..+.++++|++||+++|++|++|+   |.+
T Consensus       384 ~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~d  460 (526)
T cd03339         384 MIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENS---GLN  460 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCC
Confidence            999999999999999999999999999999999999999999985     789999999999999999999999   778


Q ss_pred             hhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      +.|+..  .|+..+.. .+..++|+|+.+|.+.|+ .+.||||++.++.+++++|+.+
T Consensus       461 ~~~~l~--~l~~~h~~-~~~~~~Gid~~~g~~~d~-~~~gV~dp~~vk~~~l~~A~e~  514 (526)
T cd03339         461 PIETLS--EVKARQVK-EKNPHLGIDCLGRGTNDM-KEQKVFETLISKKQQILLATQV  514 (526)
T ss_pred             HHHHHH--HHHHHHHh-cCCCeEeeecCCCccCch-hhcCceecHHHHHHHHHHHHHH
Confidence            888765  23322211 235589999999999987 6899999999999999888653

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=100.00  E-value=7.4e-33  Score=262.00  Aligned_cols=195  Identities=23%  Similarity=0.268  Sum_probs=170.2

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCC-CceEEEEEeCCChh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQN-PKACTILLRGASKD   82 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~~   82 (216)
                      .+++++++..+++    ++....+|||+++++++++++   |+|+.|+++++|+++|++|++|++ +++|||+|||+|++
T Consensus       298 ~~I~av~~~~~~~----LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~  373 (515)
T cd03338         298 LKIMVVKDIEREE----IEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKL  373 (515)
T ss_pred             CCceEEecCCHHH----HHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHH
Confidence            5677777333333    444555799999999999886   999999999999999999999987 69999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||++++++++++|++|||||++|+++|.+|++++     ..+.++++|++||+.+|++|++|+   |.++
T Consensus       374 ~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~Na---G~d~  450 (515)
T cd03338         374 VLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENA---GLNP  450 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
Confidence            99999999999999999999999999999999999999999985     789999999999999999999999   7788


Q ss_pred             hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      .|+..  .|+..+  ..+..++|+|+.+|.+.|+ .+.||||++.++.+++++|+.
T Consensus       451 ~~~~~--~l~~~h--~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~~  501 (515)
T cd03338         451 ISIVT--ELRNRH--AQGEKNAGINVRKGAITNI-LEENVVQPLLVSTSAITLATE  501 (515)
T ss_pred             HHHHH--HHHHHH--HccCCccceeccCCCccch-hhcCceecHHHHHHHHHHHHH
Confidence            88765  343332  2345689999999999987 589999999999998888764

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=100.00  E-value=2.1e-32  Score=260.13  Aligned_cols=196  Identities=21%  Similarity=0.257  Sum_probs=168.5

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECC--eEEEEEeecCCCceEEEEEeCCChh
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD--EYFCYITECQNPKACTILLRGASKD   82 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG~t~~   82 (216)
                      .+++++.-.++    .++....+|||+++++++++.+   |+|+.|+++++|+  ++|++|++|+++++|||+|||+|++
T Consensus       313 ~i~~v~~~~~~----~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~  388 (532)
T TIGR02343       313 DLPAVRWVGGH----ELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKM  388 (532)
T ss_pred             CcEEEEcCCHH----HHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHH
Confidence            45666633333    3555666799999999999986   9999999999998  4899999999999999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||+++++++++++++|||||++|+++|.+|++++     ..+.++++|++||+++|++|++|+   |.++
T Consensus       389 ~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~Na---G~d~  465 (532)
T TIGR02343       389 IIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENS---GLDP  465 (532)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
Confidence            99999999999999999999999999999999999999999985     789999999999999999999999   7788


Q ss_pred             hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      .|...  .|+..++. .+..++|+|+.++.+.|+ ...||||++.++.+++++|+.+
T Consensus       466 ~~~l~--~l~~~h~~-~~~~~~Gid~~~g~i~d~-~~~gV~Dp~~vk~~al~~A~e~  518 (532)
T TIGR02343       466 IGTLS--DLKSLQMK-EKNPHLGVDCLGDGTNDM-KEQGVFETLIGKKQQIQLATQL  518 (532)
T ss_pred             HHHHH--HHHHHHHh-cCCCccCeeCCCCccccc-hhccCeecHHHHHHHHHHHHHH
Confidence            77664  23322211 224579999999999887 5799999999999999988753

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=100.00  E-value=4.7e-32  Score=257.88  Aligned_cols=198  Identities=22%  Similarity=0.215  Sum_probs=168.2

Q ss_pred             CCcEEEEecCcccccccchhhhhhhcCceeeeeecccC---------cceeceEEEEEECCeEEEEEeecCCCceEEEEE
Q psy2833           6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLN---------HWLCSSQDACLLGDEYFCYITECQNPKACTILL   76 (216)
Q Consensus         6 ~~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~---------~g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIll   76 (216)
                      ..|++++++-.+++    ++....+|||++++++.+++         -|+|+.|+++++|+++|++|++|+++++|||+|
T Consensus       298 k~~I~~i~rv~~~~----LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIli  373 (536)
T TIGR02340       298 EAGAMGVRRCKKED----LKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIIL  373 (536)
T ss_pred             HCCcEEEecCCHHH----HHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence            35677777544444    44445579999999997652         299999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcc
Q psy2833          77 RGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKL  151 (216)
Q Consensus        77 rG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~  151 (216)
                      ||+|+.+++|+||+++||++++++++++|++|||||++|+++|.+|++++     ..+.++++|++||+.+|++|++|+ 
T Consensus       374 rG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~Na-  452 (536)
T TIGR02340       374 RGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNA-  452 (536)
T ss_pred             eCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHC-
Confidence            99999999999999999999999999999999999999999999999875     789999999999999999999999 


Q ss_pred             cCCCChhHHHHHHHHHHhhhhcC------CceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         152 VPGGGAVEMAVSHVSSCFQDNLL------GRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       152 v~Ggga~E~~~s~~L~~~a~~~~------g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                        |.++.|+..  .|+.++....      +..++|+|+.++.+.|+ ...||||+..++.++++.|+.
T Consensus       453 --G~d~~~~l~--~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~-~~~gI~Dp~~~k~~~l~~A~e  515 (536)
T TIGR02340       453 --ALDSTELVA--KLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDN-KEAGVLEPAVSKVKSLKFATE  515 (536)
T ss_pred             --CCCHHHHHH--HHHHHHHccCcccccccCceEeEEccCCccccc-hhccceecHHHHHHHHHHHHH
Confidence              778887764  3443332111      23479999999999987 589999999999998887764

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=100.00  E-value=3.8e-32  Score=257.81  Aligned_cols=195  Identities=22%  Similarity=0.314  Sum_probs=168.6

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL   84 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l   84 (216)
                      .++++.+-.+++    +++...+||++++++++++.+   |+|+.|+++++++++|++|++|+++++|||+|||+|++++
T Consensus       304 ~I~~~~~v~~~d----l~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l  379 (522)
T TIGR02345       304 NIFCAGRVSDED----LKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFI  379 (522)
T ss_pred             CcEEEecCCHHH----HHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHH
Confidence            345554433333    444455899999999999986   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833          85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE  159 (216)
Q Consensus        85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E  159 (216)
                      +|+||+++||+++++++++++++|||||++|++++.+|++++     ..+.++++|++||+++|++|++|+   |.++.|
T Consensus       380 ~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~Na---G~d~~~  456 (522)
T TIGR02345       380 EEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENA---GFDSIE  456 (522)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH
Confidence            999999999999999999999999999999999999999885     789999999999999999999999   778877


Q ss_pred             HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      +..  .|+..  |..+..++|+|+.++.+.|+ ...||||+..++.+++++++.+
T Consensus       457 vl~--~l~~~--h~~~~~~~G~d~~~~~i~d~-~~~gI~dp~~vk~~~l~~A~e~  506 (522)
T TIGR02345       457 ILN--KLRSR--HAKGGKWYGVDINTEDIGDN-FENFVWEPLLVKKNALKAAFEA  506 (522)
T ss_pred             HHH--HHHHH--HHcCCCccceeCCCCcccch-hhcCceEcHHHHHHHHHHHHHH
Confidence            664  33332  22345679999999999887 6899999999999999888754

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=99.98  E-value=7.9e-32  Score=256.20  Aligned_cols=197  Identities=16%  Similarity=0.192  Sum_probs=170.2

Q ss_pred             CCcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecC-CCceEEEEEeCCCh
Q psy2833           6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQ-NPKACTILLRGASK   81 (216)
Q Consensus         6 ~~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~-~~~~~TIllrG~t~   81 (216)
                      ..++++++....+    .++...++|||+++++++++++   |+|+.|+++++|+++|++|++|. ++++|||+|||||+
T Consensus       299 ~~~I~av~~~~~~----~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~  374 (531)
T TIGR02346       299 KYNIMVLKIPSKF----ELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTK  374 (531)
T ss_pred             HCCcEEEecCCHH----HHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCH
Confidence            4667888755554    3444566899999999999876   99999999999999999999988 58999999999999


Q ss_pred             hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833          82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG  156 (216)
Q Consensus        82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg  156 (216)
                      ++++|.||+++||+++++++++++++|||||++|+++|.+|++++     ..+.++++|++||+.+|++|++|+   |.+
T Consensus       375 ~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~d  451 (531)
T TIGR02346       375 NLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENA---GLN  451 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhC---CCC
Confidence            999999999999999999999999999999999999999999985     789999999999999999999999   778


Q ss_pred             hhHHHHHHHHHHhhhhcCCceEEEEeeccCC--CCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--PGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      +.++..  .|+..  |..+..++|+|+.++.  +.|+ ...||||++.++.+++++++.+
T Consensus       452 ~~~~~~--~l~~~--h~~~~~~~Gid~~~~~~~i~d~-~~~gI~dp~~vk~~~l~~A~e~  506 (531)
T TIGR02346       452 PNEVIP--KLYAA--HKKGNTSSGIDIEAESDGVKDA-SEAGIYDNLATKKWAIKLATEA  506 (531)
T ss_pred             HHHHHH--HHHHH--HHccCCccceeeeCCCccccCh-hhcCceEcHHHHHHHHHHHHHH
Confidence            877664  23222  2234558999999998  5777 5899999999999999888643

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=99.98  E-value=8.5e-32  Score=251.48  Aligned_cols=196  Identities=24%  Similarity=0.269  Sum_probs=170.7

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL   83 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~   83 (216)
                      .+++|+++..+++    ++.....||++++++++++++   |+|+.|++.++|+++|++|++|+.++.|||+|||+|+.+
T Consensus       249 ~~I~~v~~~~~~~----L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~  324 (464)
T cd00309         249 LGIMAVRRVRKED----LERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVE  324 (464)
T ss_pred             CCeEEEEeCCHHH----HHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHH
Confidence            5688887744333    333455799999999999876   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833          84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV  158 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~  158 (216)
                      ++|+||+++||++++++++++|++|||||++|+++|.+|++++     ..++++++|++||+.+|++|++|+   |.+..
T Consensus       325 l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~d~~  401 (464)
T cd00309         325 LDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENA---GLDPI  401 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHc---CCCHH
Confidence            9999999999999999999999999999999999999999886     889999999999999999999999   77877


Q ss_pred             HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      |+..  .|+..  +.++..++|+|..++.+.|+ ...||||+..++.+++++++-+
T Consensus       402 ~~~~--~l~~~--~~~~~~~~g~d~~~~~~~d~-~~~gI~dp~~vk~~~l~~A~e~  452 (464)
T cd00309         402 EVVT--KLRAK--HAEGGGNAGGDVETGEIVDM-KEAGIIDPLKVKRQALKSATEA  452 (464)
T ss_pred             HHHH--HHHHH--hhccCCCeeEECCCCcEeeh-hhccCeecHHHHHHHHHHHHHH
Confidence            7654  23332  23455679999999999987 6899999999999998887643

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>KOG0363|consensus

Probab=99.98  E-value=1.6e-32  Score=246.15  Aligned_cols=187  Identities=21%  Similarity=0.281  Sum_probs=172.8

Q ss_pred             cccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchh
Q psy2833          18 RDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDA   94 (216)
Q Consensus        18 r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Da   94 (216)
                      ++.+.-+++-.+.||+.|+|++++++.   |+|+.+++..||+++++.|++|+-..+|||+|||+|+++|||.||++|||
T Consensus       309 HADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDA  388 (527)
T KOG0363|consen  309 HADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDA  388 (527)
T ss_pred             cccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHH
Confidence            345555666677899999999999986   99999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHh
Q psy2833          95 LHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCF  169 (216)
Q Consensus        95 l~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~  169 (216)
                      |||+....++++++.|||+.||.++..+.+++     +...++.+|+.||..+|.+|++|+   |+++.|+....    .
T Consensus       389 LcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNa---G~dsaelva~L----r  461 (527)
T KOG0363|consen  389 LCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNA---GYDSAELVAQL----R  461 (527)
T ss_pred             HHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccC---CCCHHHHHHHH----H
Confidence            99999999999999999999999999999998     899999999999999999999999   88999987643    4


Q ss_pred             hhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833         170 QDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLV  212 (216)
Q Consensus       170 a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  212 (216)
                      |.|.+|+..+|+|...|++.|| .+.||.|...||.+-..|+-
T Consensus       462 a~h~~g~~t~Gld~~~G~i~dm-~~~Gi~es~~vK~~vv~sas  503 (527)
T KOG0363|consen  462 AEHYNGRTTMGLDVRNGEIGDM-RELGIVESLKVKQAVVSSAS  503 (527)
T ss_pred             HHhhcCCcccccccccCchhhH-HHhhhHHHHHHHHHHHhhhH
Confidence            6778999999999999999999 58999999999998877763

>KOG0364|consensus

Probab=99.97  E-value=2e-32  Score=249.29  Aligned_cols=177  Identities=34%  Similarity=0.470  Sum_probs=161.3

Q ss_pred             hcCceeeeeecccCc---c-eeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCC
Q psy2833          30 QAGKYIDSSIVTLNH---W-LCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEP  105 (216)
Q Consensus        30 ~~G~~i~~sl~~~~~---g-~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~  105 (216)
                      +||++++++.+++.+   | .|++|+.+++||++|+||..|++|++|||++|||++++++|+||+++||+.|.++.+.+|
T Consensus       322 acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~P  401 (527)
T KOG0364|consen  322 ACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINP  401 (527)
T ss_pred             hcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCC
Confidence            599999999999987   4 799999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEE
Q psy2833         106 KLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVT  180 (216)
Q Consensus       106 ~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~  180 (216)
                      +++|||||+||++|+.|+..+     +.++.++++++||+++|++|++|.   |.....  ....|+..  +..|...++
T Consensus       402 klvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqnc---Gan~Ir--~lTalr~k--h~~G~~~~g  474 (527)
T KOG0364|consen  402 KLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNC---GANPIR--ALTALRAK--HKEGQRVWG  474 (527)
T ss_pred             cccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhc---CccHHH--HHHHHHHH--hcCcceeec
Confidence            999999999999999999976     899999999999999999999999   554444  44445544  678888999


Q ss_pred             EeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         181 LGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       181 i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      +|..+|...|+ ..-|+|++--++.|.+++++-+
T Consensus       475 i~g~tg~iVDm-~~~~iwep~~vK~Q~~ktaves  507 (527)
T KOG0364|consen  475 IDGETGVIVDM-VELGIWEPEAVKLQTGKTAVES  507 (527)
T ss_pred             ccCceeeEeee-eeccccchhhhhhhhhhHHHHH
Confidence            99999999887 5789999999999999988743

>KOG0359|consensus

Probab=99.97  E-value=2.5e-31  Score=241.89  Aligned_cols=185  Identities=21%  Similarity=0.280  Sum_probs=164.6

Q ss_pred             ccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhch
Q psy2833          17 KRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQD   93 (216)
Q Consensus        17 ~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~D   93 (216)
                      +|+.+|+|++-.++||+..+++++++++   |||++|++.++|+++|+|+++|++|++||||++|||++.+.+++.+++|
T Consensus       306 RRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdaird  385 (520)
T KOG0359|consen  306 RRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRD  385 (520)
T ss_pred             HHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhh
Confidence            4566677777777999999999999998   9999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHH
Q psy2833          94 ALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSC  168 (216)
Q Consensus        94 al~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~  168 (216)
                      ++..+++.++|+.++||+|++|.+++.+|+...     +....+++|++||.+||++|+.|+   |.+.+|...+.  .+
T Consensus       386 glrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~ns---g~D~qe~l~~l--~~  460 (520)
T KOG0359|consen  386 GLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNS---GLDEQETLVSL--KK  460 (520)
T ss_pred             HHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhc---CCchHHHHHHH--HH
Confidence            999999999999999999999999999999765     888999999999999999999999   88999988642  22


Q ss_pred             hhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhh
Q psy2833         169 FQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSL  211 (216)
Q Consensus       169 ~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~  211 (216)
                      ...  .+  ..|+|++.|+|. -|...||||+..++-+.+-|.
T Consensus       461 e~~--~~--~~g~dl~~g~~~-~~~~~gi~Dny~v~~~~l~s~  498 (520)
T KOG0359|consen  461 EHE--VT--LRGLDLFRGEEC-DPSRKGIYDNYSVKKQLLRSE  498 (520)
T ss_pred             hhh--hh--hcccccccCCcc-chhhccccchHHHHHHHhhhh
Confidence            221  22  349999999996 567889999998887766553

>KOG0357|consensus

Probab=99.97  E-value=7e-31  Score=233.05  Aligned_cols=194  Identities=23%  Similarity=0.299  Sum_probs=167.8

Q ss_pred             CcEEEEecC---cccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECC--eEEEEEeecCCCceEEEEEeC
Q psy2833           7 APVLVLSSN---TKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD--EYFCYITECQNPKACTILLRG   78 (216)
Q Consensus         7 ~~~~v~~~~---~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG   78 (216)
                      ++-|..-||   -+|..|..+++..|+||++|++++.++++   |+|+.|++.++|.  ++++++++|+++++.||.+||
T Consensus       169 anhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg  248 (400)
T KOG0357|consen  169 ANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRG  248 (400)
T ss_pred             hhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEec
Confidence            344444443   57899999999999999999999999997   9999999999995  799999999999999999999


Q ss_pred             CChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccC
Q psy2833          79 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVP  153 (216)
Q Consensus        79 ~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~  153 (216)
                      +|+.+++|.+|++||||||++|.++|.++|+|||+.|+++|..+.+-+     .+|+++|+|+|||+.||-.|++|+   
T Consensus       249 ~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaens---  325 (400)
T KOG0357|consen  249 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENS---  325 (400)
T ss_pred             CcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhcc---
Confidence            999999999999999999999999999999999999999999998877     999999999999999999999999   


Q ss_pred             CCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhh
Q psy2833         154 GGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRG  207 (216)
Q Consensus       154 Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~  207 (216)
                      |-.++|.....+-++.   ..++-.+|||+.-...-||+ +-+|+|..+=|.+-
T Consensus       326 gl~pi~~ls~~ka~q~---~~~~~~lGidcl~~G~nDMk-~~~vie~l~~KkqQ  375 (400)
T KOG0357|consen  326 GLDPIETLSDVKARQV---KEMNPALGIDCLHKGTNDMK-EQHVIETLIGKKQQ  375 (400)
T ss_pred             CCCchhhhhHhHHHHH---HhcCcccCcchhccCchhhh-hhccHHHhhhhHHH
Confidence            6688887764333332   24566789999877777884 67888888644443

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=9.3e-29  Score=235.79  Aligned_cols=189  Identities=14%  Similarity=0.093  Sum_probs=161.0

Q ss_pred             cEEEEecCcccccccc--hhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCC--------
Q psy2833           8 PVLVLSSNTKRDSGRK--VQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNP--------   69 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~--~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~--------   69 (216)
                      ++++++.-... ..|+  ++....+||+++++     +++++++   |+|+.|++.+   ++|++|++|.++        
T Consensus       271 ~i~avr~~~~~-~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r~~  346 (542)
T PRK12849        271 KVAAVKAPGFG-DRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEARVA  346 (542)
T ss_pred             cEEEEeCCCcc-chhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHHHHH
Confidence            67888766533 3333  44444569999999     6888875   9999999865   789999998875        


Q ss_pred             ---------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833          70 ---------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS  122 (216)
Q Consensus        70 ---------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L  122 (216)
                                                 +.|||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|
T Consensus       347 ~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L  425 (542)
T PRK12849        347 QIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKAL  425 (542)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHH
Confidence                                       489999999999999999999999999999999997 9999999999999999


Q ss_pred             hhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833         123 ASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF  198 (216)
Q Consensus       123 ~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~  198 (216)
                      ++++    +.+.++++|++||+++|++|++|+   |.++.|+..  .|+..  +    .++|+|..++.+.|+ .+.|||
T Consensus       426 ~~~~~~~g~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~vi~--~L~~~--~----~~~G~d~~~g~~~d~-~~~GV~  493 (542)
T PRK12849        426 DELAGLNGDQAAGVEIVRRALEAPLRQIAENA---GLDGSVVVA--KVLEL--E----DGFGFNAATGEYGDL-IAAGII  493 (542)
T ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHH--HHHhh--C----CCcceeCCCCccccH-HhccCc
Confidence            9885    899999999999999999999999   778888654  33332  1    369999999999986 689999


Q ss_pred             ccchhhhhhhhhhhh
Q psy2833         199 FGSVLGVRGALSLVR  213 (216)
Q Consensus       199 ~~~~~~~~~~~~~~~  213 (216)
                      |+..++.+++++++-
T Consensus       494 Dp~~vk~~al~~A~e  508 (542)
T PRK12849        494 DPVKVTRSALQNAAS  508 (542)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999988764

>cd03344 GroEL GroEL_like type I chaperonin

Probab=99.96  E-value=1.4e-28  Score=233.54  Aligned_cols=192  Identities=15%  Similarity=0.061  Sum_probs=163.0

Q ss_pred             CcEEEEecCccccc-ccchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCC--------
Q psy2833           7 APVLVLSSNTKRDS-GRKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNP--------   69 (216)
Q Consensus         7 ~~~~v~~~~~~r~~-~~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~--------   69 (216)
                      .++++++.-..++. ...++....+||+++++     ++.++.+   |+|+.|++.+   ++|++|++|.++        
T Consensus       268 ~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~  344 (520)
T cd03344         268 LKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIA  344 (520)
T ss_pred             ceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHH
Confidence            46788876544443 22344444569999999     7888775   9999999987   689999988775        


Q ss_pred             ---------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833          70 ---------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS  122 (216)
Q Consensus        70 ---------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L  122 (216)
                                                 ++|||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|
T Consensus       345 ~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L  423 (520)
T cd03344         345 QIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPAL  423 (520)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHH
Confidence                                       599999999999999999999999999999999997 9999999999999999


Q ss_pred             hhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833         123 ASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF  198 (216)
Q Consensus       123 ~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~  198 (216)
                      ++++    +.+.++++|++||+++|++|++|+   |.++.|+..  .|+....      ++|+|..+|.+.|+ .+.|||
T Consensus       424 ~~~~~~~~~~~~~~~~~a~Al~~ip~~La~Na---G~d~~~vi~--~l~~~~~------~~G~d~~~g~~~d~-~~~gV~  491 (520)
T cd03344         424 DKLKALNGDEKLGIEIVRRALEAPLRQIAENA---GVDGSVVVE--KVLESPD------GFGYDAATGEYVDM-IEAGII  491 (520)
T ss_pred             HHhccCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHhhcC------CEeEECCCCcccch-HhccCe
Confidence            9885    899999999999999999999999   778888765  2333211      79999999999987 689999


Q ss_pred             ccchhhhhhhhhhhhh
Q psy2833         199 FGSVLGVRGALSLVRI  214 (216)
Q Consensus       199 ~~~~~~~~~~~~~~~~  214 (216)
                      |+..++.+++++++-+
T Consensus       492 Dp~~vk~~~l~~A~~~  507 (520)
T cd03344         492 DPTKVVRSALQNAASV  507 (520)
T ss_pred             ecHHHHHHHHHHHHHH
Confidence            9999999999887643

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=1.1e-28  Score=235.32  Aligned_cols=192  Identities=13%  Similarity=0.055  Sum_probs=161.2

Q ss_pred             cEEEEecCccccc-ccchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc--------
Q psy2833           8 PVLVLSSNTKRDS-GRKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK--------   70 (216)
Q Consensus         8 ~~~v~~~~~~r~~-~~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~--------   70 (216)
                      ++++++.-...+. ...++...+.||+++++     +++++++   |+|+.|++.+   ++|++|++|.+++        
T Consensus       271 ~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~  347 (542)
T PRK00013        271 KVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGDKEAIKARVAQ  347 (542)
T ss_pred             eEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCCHHHHHHHHHH
Confidence            4677765542221 12344444569999999     7898876   9999999875   7899999998776        


Q ss_pred             ---------------------------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833          71 ---------------------------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA  123 (216)
Q Consensus        71 ---------------------------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~  123 (216)
                                                 .+||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|+
T Consensus       348 l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~  426 (542)
T PRK00013        348 IKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALE  426 (542)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHH
Confidence                                       78999999999999999999999999999999997 99999999999999999


Q ss_pred             hhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccc
Q psy2833         124 SKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFF  199 (216)
Q Consensus       124 ~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~  199 (216)
                      ++.    ..+.++++|++||+++|++|++|+   |.++.|+..  .|+..+     ..++|+|..++.+.|+ .+.||||
T Consensus       427 ~~~~~~~~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~vl~--~l~~~~-----~~~~G~d~~~g~~~d~-~~~gI~D  495 (542)
T PRK00013        427 ALKGLNGDEATGINIVLRALEAPLRQIAENA---GLEGSVVVE--KVKNGK-----GKGYGYNAATGEYVDM-IEAGIID  495 (542)
T ss_pred             HhcCCChHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHhhc-----CCCEeEeCCCCceeeh-hhccCee
Confidence            874    899999999999999999999999   778888765  233322     2479999999999876 6899999


Q ss_pred             cchhhhhhhhhhhhh
Q psy2833         200 GSVLGVRGALSLVRI  214 (216)
Q Consensus       200 ~~~~~~~~~~~~~~~  214 (216)
                      +..++.+++++++-+
T Consensus       496 p~~vk~~al~~A~~~  510 (542)
T PRK00013        496 PTKVTRSALQNAASV  510 (542)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999988643

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=99.96  E-value=1.2e-28  Score=229.36  Aligned_cols=184  Identities=26%  Similarity=0.353  Sum_probs=162.7

Q ss_pred             cchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEe--ecCCCceEEEEEeCCChhhHHHHHHHhchhhH
Q psy2833          22 RKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYIT--ECQNPKACTILLRGASKDLLNETERNLQDALH   96 (216)
Q Consensus        22 ~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~--~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~   96 (216)
                      +.++.....||++++++++++++   |+|+.++++.+++++|++|+  +|..++.|||+|||+++.+++|.||+++||++
T Consensus       277 ~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~  356 (485)
T PF00118_consen  277 EDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALK  356 (485)
T ss_dssp             HHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHH
Confidence            34555556799999999999886   99999999999999999999  58899999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh
Q psy2833          97 VARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD  171 (216)
Q Consensus        97 v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~  171 (216)
                      +++++++++++|||||++|++++.+|++++     ..+.+.++|++||+.+|++|.+|+   |.++.++...  |...+ 
T Consensus       357 ~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~~~~~~~~~--l~~~h-  430 (485)
T PF00118_consen  357 VLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNA---GLDSSEVISK--LKSFH-  430 (485)
T ss_dssp             HHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHT---TSTHHHHHHH--HHHHH-
T ss_pred             HHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhcc---CCCceeeehh--hHhhh-
Confidence            999999999999999999999999999887     788999999999999999999999   7788776642  33321 


Q ss_pred             hcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         172 NLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       172 ~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                       ..+ .++|+|..++++.|+ .+.||||++.++.+++++++.+
T Consensus       431 -~~~-~~~g~d~~~~~i~~~-~~~gi~dp~~~k~~~l~~A~~~  470 (485)
T PF00118_consen  431 -NNG-NNYGIDLDTGEIVDM-KEAGILDPLLVKISALKSAVEI  470 (485)
T ss_dssp             -HST-TTEEEETTTTEEEET-TTTTCEEEHHHHHHHHHHHHHH
T ss_pred             -ccc-cccCcCccCCceecc-ccccchhhHHHHHHHHHHHHHH
Confidence             122 289999999999876 5889999999999999988754

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=3e-28  Score=232.46  Aligned_cols=191  Identities=13%  Similarity=0.058  Sum_probs=161.4

Q ss_pred             CcEEEEecCcccccccc--hhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCC-------
Q psy2833           7 APVLVLSSNTKRDSGRK--VQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNP-------   69 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~--~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~-------   69 (216)
                      .++++++.-. ....|+  ++...+.|||++++     ++.++++   |+|+.|++.+   +++++|++|.++       
T Consensus       271 ~~i~av~~~~-~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri  346 (545)
T PRK12852        271 LKVAAVKAPG-FGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARV  346 (545)
T ss_pred             ceEEEEecCC-cccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHH
Confidence            4788887655 222223  33344569999999     7888775   9999999988   589999988764       


Q ss_pred             ----------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHH
Q psy2833          70 ----------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHV  121 (216)
Q Consensus        70 ----------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~  121 (216)
                                                  +.+||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+
T Consensus       347 ~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~  425 (545)
T PRK12852        347 GQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKA  425 (545)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHH
Confidence                                        789999999999999999999999999999999996 999999999999999


Q ss_pred             Hhhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcc
Q psy2833         122 SASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEV  197 (216)
Q Consensus       122 L~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi  197 (216)
                      |++++    ..++++++|++||+++|++|++|+   |.++.++..  .|+..  +   ..++|+|+.++.+.|+ .+.||
T Consensus       426 L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~Na---G~d~~~vl~--~l~~~--~---~~~~G~d~~~g~~~d~-~~~GI  494 (545)
T PRK12852        426 VGRINNDNADVQAGINIVLKALEAPIRQIAENA---GVEGSIVVG--KILEN--K---SETFGFDAQTEEYVDM-VAKGI  494 (545)
T ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHhh--c---CCCeeEeCcCCCcccH-HhCcC
Confidence            99886    799999999999999999999999   778888654  23332  1   2479999999999987 57899


Q ss_pred             cccchhhhhhhhhhhh
Q psy2833         198 FFGSVLGVRGALSLVR  213 (216)
Q Consensus       198 ~~~~~~~~~~~~~~~~  213 (216)
                      ||+..++.+++++|+-
T Consensus       495 ~Dp~~vk~~al~~A~e  510 (545)
T PRK12852        495 IDPAKVVRTALQDAAS  510 (545)
T ss_pred             CcChHHHHHHHHHHHH
Confidence            9999999999988764

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=99.96  E-value=4.6e-28  Score=231.11  Aligned_cols=191  Identities=15%  Similarity=0.088  Sum_probs=159.4

Q ss_pred             cEEEEecCcccccc-cchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc--------
Q psy2833           8 PVLVLSSNTKRDSG-RKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK--------   70 (216)
Q Consensus         8 ~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~--------   70 (216)
                      ++++|+...-++.+ ..++....+||+++++     +++++++   |+|+.|++.+   ++|++|++|.+++        
T Consensus       272 ~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~  348 (544)
T PRK12850        272 KSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQ  348 (544)
T ss_pred             eEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHH
Confidence            45777654322211 2233344569999999     7888875   9999999886   7899999988754        


Q ss_pred             ---------------------------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833          71 ---------------------------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA  123 (216)
Q Consensus        71 ---------------------------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~  123 (216)
                                                 .|||+|||+|+++++|+||+++||+++++++++++ +|||||++|+++|..|+
T Consensus       349 l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~  427 (544)
T PRK12850        349 IRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALR  427 (544)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHH
Confidence                                       89999999999999999999999999999999995 99999999999999999


Q ss_pred             hhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccc
Q psy2833         124 SKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFF  199 (216)
Q Consensus       124 ~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~  199 (216)
                      ++.    ..+.++++|++||+++|++|++|+   |.++.|+..  .|+..  +    .++|+|..++.+.|+ .+.||||
T Consensus       428 ~~~~~~~~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~v~~--~l~~~--~----~~~G~d~~~g~~~d~-~~~gI~D  495 (544)
T PRK12850        428 GLKGANADETAGIDIVRRALEEPLRQIATNA---GFEGSVVVG--KVAEL--P----GNFGFNAQTGEYGDM-VEAGIID  495 (544)
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHhh--C----CCcceeCCCCcccch-hhccCcc
Confidence            874    899999999999999999999999   778888764  23332  1    268999999999887 5899999


Q ss_pred             cchhhhhhhhhhhhh
Q psy2833         200 GSVLGVRGALSLVRI  214 (216)
Q Consensus       200 ~~~~~~~~~~~~~~~  214 (216)
                      +..++.+++++++-+
T Consensus       496 p~~vk~~al~~A~~~  510 (544)
T PRK12850        496 PAKVTRTALQDAASI  510 (544)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999888643

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=99.95  E-value=6.4e-28  Score=229.99  Aligned_cols=192  Identities=14%  Similarity=0.054  Sum_probs=160.3

Q ss_pred             CcEEEEecCccccc-ccchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc-------
Q psy2833           7 APVLVLSSNTKRDS-GRKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK-------   70 (216)
Q Consensus         7 ~~~~v~~~~~~r~~-~~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~-------   70 (216)
                      -++++|+.-.-++. ...++.....|||++++     ++.++.+   |+|+.|++.+   ++|++|++|.+++       
T Consensus       271 ~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~  347 (541)
T PRK12851        271 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVA  347 (541)
T ss_pred             eeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHH
Confidence            45677765332221 22233344569999999     6888775   9999999988   7899999987753       


Q ss_pred             ----------------------------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833          71 ----------------------------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS  122 (216)
Q Consensus        71 ----------------------------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L  122 (216)
                                                  .+||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|..|
T Consensus       348 ~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L  426 (541)
T PRK12851        348 QIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKAL  426 (541)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHH
Confidence                                        88999999999999999999999999999999997 9999999999999999


Q ss_pred             hhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833         123 ASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF  198 (216)
Q Consensus       123 ~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~  198 (216)
                      ++++    ..+.++++|++||+++|++|++|+   |.++.|+..  .|+..  +    .++|+|+.++.+.|+ .+.|||
T Consensus       427 ~~~~~~~~~~~~~~~~~a~AL~~ip~~La~Na---G~d~~~vl~--~l~~~--~----~~~G~d~~~g~~~d~-~~~GIi  494 (541)
T PRK12851        427 DKLETANGDQRTGVEIVRRALEAPVRQIAENA---GAEGSVVVG--KLREK--P----GGYGFNAATNEYGDL-YAQGVI  494 (541)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHhh--C----CCeeeeCCCCCccch-hhccCE
Confidence            9886    789999999999999999999999   778888765  23322  1    269999999999876 689999


Q ss_pred             ccchhhhhhhhhhhhh
Q psy2833         199 FGSVLGVRGALSLVRI  214 (216)
Q Consensus       199 ~~~~~~~~~~~~~~~~  214 (216)
                      |+..++.+++++++-+
T Consensus       495 Dp~~vk~~al~~A~e~  510 (541)
T PRK12851        495 DPVKVVRTALQNAASV  510 (541)
T ss_pred             ecHHHHHHHHHHHHHH
Confidence            9999999999988643

>PTZ00114 Heat shock protein 60; Provisional

Probab=99.95  E-value=1.1e-27  Score=229.06  Aligned_cols=191  Identities=15%  Similarity=0.094  Sum_probs=159.2

Q ss_pred             cEEEEecCcccccc-cchhhhhhhcCceeeeee------cccCc---ceeceEEEEEECCeEEEEEeecC----------
Q psy2833           8 PVLVLSSNTKRDSG-RKVQLENIQAGKYIDSSI------VTLNH---WLCSSQDACLLGDEYFCYITECQ----------   67 (216)
Q Consensus         8 ~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~sl------~~~~~---g~c~~v~~~~ig~~~~~~~~~~~----------   67 (216)
                      ++++++.-..++.. ..++...+.||++++++.      +++.+   |+|+.|++.+   +++++|++|.          
T Consensus       283 ~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~  359 (555)
T PTZ00114        283 KVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVE  359 (555)
T ss_pred             EEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHH
Confidence            57778774443332 234444456999999998      66664   9999999998   4566777665          


Q ss_pred             -------------------------CCceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833          68 -------------------------NPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS  122 (216)
Q Consensus        68 -------------------------~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L  122 (216)
                                               ++++|||+|||+|+++++|.+|+++||+++++++++++ +|||||++|+++|.+|
T Consensus       360 ~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L  438 (555)
T PTZ00114        360 LLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLL  438 (555)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHH
Confidence                                     67899999999999999999999999999999999987 9999999999999999


Q ss_pred             hhhh-------hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCC
Q psy2833         123 ASKD-------LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGA  195 (216)
Q Consensus       123 ~~~~-------~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~  195 (216)
                      ++++       +.+.++++|++||+++|++|++|+   |.++.++..  .|+.     .+..++|+|..+|.+.|+ .+.
T Consensus       439 ~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~Na---G~d~~~v~~--~l~~-----~~~~~~G~d~~~g~~~d~-~~~  507 (555)
T PTZ00114        439 DKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENA---GVEGAVVVE--KILE-----KKDPSFGYDAQTGEYVNM-FEA  507 (555)
T ss_pred             HHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHh-----cCCCCEeEeCCCCcEeeH-HhC
Confidence            9763       789999999999999999999999   778777654  2333     344579999999999986 689


Q ss_pred             cccccchhhhhhhhhhhh
Q psy2833         196 EVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       196 gi~~~~~~~~~~~~~~~~  213 (216)
                      ||||+..++.+++++|+-
T Consensus       508 GI~Dp~~vk~~al~~A~~  525 (555)
T PTZ00114        508 GIIDPTKVVRSALVDAAS  525 (555)
T ss_pred             CCEeCHHHHHHHHHHHHH
Confidence            999999999999888764

>TIGR02348 GroEL chaperonin GroL

Probab=99.95  E-value=9.7e-28  Score=227.97  Aligned_cols=191  Identities=14%  Similarity=0.085  Sum_probs=160.9

Q ss_pred             cEEEEecCcccccc-cchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc--------
Q psy2833           8 PVLVLSSNTKRDSG-RKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK--------   70 (216)
Q Consensus         8 ~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~--------   70 (216)
                      ++++++.-..++.+ ..++...+.||+++++     +++++++   |+|+.|++.+   +++++|++|.+++        
T Consensus       270 ~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~  346 (524)
T TIGR02348       270 NVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQ  346 (524)
T ss_pred             ceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHH
Confidence            67777666543333 2344445569999999     8999886   9999999876   6899999887765        


Q ss_pred             ---------------------------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833          71 ---------------------------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA  123 (216)
Q Consensus        71 ---------------------------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~  123 (216)
                                                 .+||+|||+|+++++|+||+++||+++++++++++ +|||||++|+++|.+|+
T Consensus       347 l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~  425 (524)
T TIGR02348       347 IKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALE  425 (524)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHH
Confidence                                       68999999999999999999999999999999997 99999999999999999


Q ss_pred             hhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccc
Q psy2833         124 SKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFF  199 (216)
Q Consensus       124 ~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~  199 (216)
                      +..    ..++++++|++||+++|++|++|+   |.++.|+..  .|+..    ++  .+|+|..++.+.|+ .+.||||
T Consensus       426 ~~~~~~~~~~~~~~~~a~AL~~ip~~La~Na---G~d~~~v~~--~l~~~----~~--~~G~d~~~g~~~d~-~~~gI~D  493 (524)
T TIGR02348       426 GLKGDNEDEAIGIDIVKRALEAPLRQIAENA---GKDGAVVAE--KVKES----KG--NFGFNAATGEYEDL-VEAGIID  493 (524)
T ss_pred             HhccCChHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHH--HHHhc----CC--CeeEeCcCCcccch-hhccCEE
Confidence            732    899999999999999999999999   778888764  34333    23  29999999999987 5779999


Q ss_pred             cchhhhhhhhhhhhh
Q psy2833         200 GSVLGVRGALSLVRI  214 (216)
Q Consensus       200 ~~~~~~~~~~~~~~~  214 (216)
                      +..++.+++++++-+
T Consensus       494 p~~vk~~al~~A~~~  508 (524)
T TIGR02348       494 PTKVTRSALQNAASI  508 (524)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999988643

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>PRK14104 chaperonin GroEL; Provisional

Probab=99.95  E-value=2.2e-27  Score=226.52  Aligned_cols=193  Identities=14%  Similarity=0.080  Sum_probs=164.5

Q ss_pred             CCcEEEEecCcccccc-cchhhhhhhcCceeeee-----ecccCc---ceeceEEEEEECCeEEEEEeecCCC-------
Q psy2833           6 SAPVLVLSSNTKRDSG-RKVQLENIQAGKYIDSS-----IVTLNH---WLCSSQDACLLGDEYFCYITECQNP-------   69 (216)
Q Consensus         6 ~~~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~s-----l~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~-------   69 (216)
                      ..++++|+.-..++.+ ..++...+.||++++++     ++++++   |+|+.+++   +++++++|++|.++       
T Consensus       270 ~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri  346 (546)
T PRK14104        270 GLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARV  346 (546)
T ss_pred             eeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHH
Confidence            3578888777654443 34555556799999999     888875   99999884   77899999999875       


Q ss_pred             ----------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHH
Q psy2833          70 ----------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHV  121 (216)
Q Consensus        70 ----------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~  121 (216)
                                                  +.+||+|||+|+++++|+||+++||+++++++++++ +|||||++|+++|..
T Consensus       347 ~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~  425 (546)
T PRK14104        347 AQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQ  425 (546)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHH
Confidence                                        899999999999999999999999999999999997 999999999999999


Q ss_pred             Hhhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcc
Q psy2833         122 SASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEV  197 (216)
Q Consensus       122 L~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi  197 (216)
                      |+++.    ..+.++++|++||+++|++|++|+   |.++.++..  .|+..     +..++|+|..++.+.|+ .+.||
T Consensus       426 L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~v~~--~l~~~-----~~~~~G~d~~~g~~~d~-~~~GI  494 (546)
T PRK14104        426 LKGIKTKNDDQKTGVEIVRKALSAPARQIAINA---GEDGSVIVG--KILEK-----EQYSYGFDSQTGEYGNL-VSKGI  494 (546)
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhC---CCCHHHHHH--HHHhc-----CCCcEeEeCCCCceeeh-HhcCC
Confidence            99875    788999999999999999999999   778887765  23322     13469999999999987 57899


Q ss_pred             cccchhhhhhhhhhhh
Q psy2833         198 FFGSVLGVRGALSLVR  213 (216)
Q Consensus       198 ~~~~~~~~~~~~~~~~  213 (216)
                      ||++.++.++++++.-
T Consensus       495 ~Dp~~vk~~al~~A~~  510 (546)
T PRK14104        495 IDPTKVVRTAIQNAAS  510 (546)
T ss_pred             EEcHHHHHHHHHHHHH
Confidence            9999999999988764

>KOG0358|consensus

Probab=99.95  E-value=1.1e-27  Score=215.87  Aligned_cols=196  Identities=23%  Similarity=0.254  Sum_probs=165.3

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEE-EECCeEEEEEeecCC-CceEEEEEeCCCh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDAC-LLGDEYFCYITECQN-PKACTILLRGASK   81 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~-~ig~~~~~~~~~~~~-~~~~TIllrG~t~   81 (216)
                      -++||+++-.+.|....++    +.|+.|+++++.+++   |+++.+++. .-|+.+++-++++.+ ..+|||++||+++
T Consensus       315 lkimvikdieRediefick----~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~  390 (534)
T KOG0358|consen  315 LKIMVIKDIEREDIEFICK----TLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNK  390 (534)
T ss_pred             CcEEEEccccHhhHHHHHh----hcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCch
Confidence            4789999988877666655    899999999999987   999999998 556669999999987 7899999999999


Q ss_pred             hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833          82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG  156 (216)
Q Consensus        82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg  156 (216)
                      .++||.||++||||||+|+..+-+.+++|||+.|++++.+|.+++     ...++.|+|+|||++||.+|++|+   |-.
T Consensus       391 lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNA---GLn  467 (534)
T KOG0358|consen  391 LVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENA---GLN  467 (534)
T ss_pred             hhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhC---CCC
Confidence            999999999999999999999999999999999999999999988     789999999999999999999999   557


Q ss_pred             hhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchh-------hhhhhhhhhhh
Q psy2833         157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVL-------GVRGALSLVRI  214 (216)
Q Consensus       157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~-------~~~~~~~~~~~  214 (216)
                      ++++..  .|+..  |..|...+||+.-.|...++-++. |-.+..|       +.....|+.+|
T Consensus       468 pI~~Vt--ELRn~--haqge~~aGInVRkg~~tni~ee~-VvQPllVs~SaitlA~Etvr~ILKI  527 (534)
T KOG0358|consen  468 PIATVT--ELRNR--HAQGEKNAGINVRKGGITNILEEN-VVQPLLVSISAITLATETVRSILKI  527 (534)
T ss_pred             hhhHHH--HHHHH--HhcCCcccceeeecccchhhHHHh-cccceeeeHHHHHHHHHHHHHHhhh
Confidence            776654  44433  456888999999999887764433 6666543       44444555544

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.7e-27  Score=224.75  Aligned_cols=177  Identities=21%  Similarity=0.171  Sum_probs=157.6

Q ss_pred             hhhhcCceeeeeecccCc---ce--eceEEEEEECCeEEEEEeecCC--CceEEEEEeCCChhhHHHHHHHhchhhHHHH
Q psy2833          27 ENIQAGKYIDSSIVTLNH---WL--CSSQDACLLGDEYFCYITECQN--PKACTILLRGASKDLLNETERNLQDALHVAR   99 (216)
Q Consensus        27 ~~i~~G~~i~~sl~~~~~---g~--c~~v~~~~ig~~~~~~~~~~~~--~~~~TIllrG~t~~~l~E~ersi~Dal~v~~   99 (216)
                      ....+||++++++.++++   |.  |+.+++.++|++++++|++|+.  +++|||++||+|+++++|.||+++|||++++
T Consensus       309 l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~  388 (524)
T COG0459         309 LAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVR  388 (524)
T ss_pred             HHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHH
Confidence            344699999999999986   88  9999999999999999999986  8899999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCchhHHHHHHHhhh--h----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhc
Q psy2833         100 NIMLEPKLVPGGGAVEMAVSHVSASK--D----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNL  173 (216)
Q Consensus       100 ~~~~~~~vV~GGGa~E~~ls~~L~~~--~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~  173 (216)
                      +++++|++|||||++|++++.+|+++  .    .++.++++|++||+.+|++|++|+   |.++.++..  .|+..+   
T Consensus       389 ~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~Na---G~d~~~v~~--~L~~~~---  460 (524)
T COG0459         389 AAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENA---GLDPIEVLS--KLRSAH---  460 (524)
T ss_pred             HHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHH--HHHhcc---
Confidence            99999999999999999999999987  2    689999999999999999999999   778888765  333321   


Q ss_pred             CCceEEEEeeccCCC-CCCCCCCcccccchhhhhhhhhhhh
Q psy2833         174 LGRVVVTLGLHAGGP-GLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       174 ~g~~~~~i~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      . ...+|+|++++.. .|| .+.||||+..++.++++++.-
T Consensus       461 ~-~~~~G~d~~~~~~~~dm-~~~GI~dP~~v~~~al~~A~e  499 (524)
T COG0459         461 A-TTNYGIDAFTGEYEDDM-IEAGIIDPLKVKRSALKNAAE  499 (524)
T ss_pred             c-CCccceeccCCccccch-HhccCcChHHHHHHHHHHHHH
Confidence            1 3459999999988 445 679999999999999998753

>CHL00093 groEL chaperonin GroEL

Probab=99.94  E-value=6.7e-27  Score=222.46  Aligned_cols=192  Identities=14%  Similarity=0.078  Sum_probs=160.0

Q ss_pred             CcEEEEecCcccccc-cchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEee---------cCC
Q psy2833           7 APVLVLSSNTKRDSG-RKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITE---------CQN   68 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~---------~~~   68 (216)
                      .++++++.-.+.+.+ ..++....+||+++++     ++.++.+   |+|+.|++.+   +++++|++         |+.
T Consensus       271 ~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~  347 (529)
T CHL00093        271 VNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQ  347 (529)
T ss_pred             ceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHH
Confidence            477888776665533 2344455569999999     7888876   9999999986   68898874         332


Q ss_pred             C-------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833          69 P-------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA  123 (216)
Q Consensus        69 ~-------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~  123 (216)
                      .                         ..+||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|+
T Consensus       348 ~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~  426 (529)
T CHL00093        348 LRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLK  426 (529)
T ss_pred             HHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHH
Confidence            1                         388899999999999999999999999999999997 99999999999999999


Q ss_pred             hhh------hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcc
Q psy2833         124 SKD------LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEV  197 (216)
Q Consensus       124 ~~~------~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi  197 (216)
                      +++      ..+.++++|++||+++|++|++|+   |.++.++..  .|+..      ..++|+|..+|.+.|+ .+.||
T Consensus       427 ~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~Na---G~d~~~v~~--~l~~~------~~~~G~d~~~g~~~d~-~~~GI  494 (529)
T CHL00093        427 TWAKNNLKEDELIGALIVARAILAPLKRIAENA---GKNGSVIIE--KVQEQ------DFEIGYNAANNKFVNM-YEAGI  494 (529)
T ss_pred             HHhccCCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHcc------CCCEeEECCCCcccch-HhccC
Confidence            872      789999999999999999999999   778887653  23221      2379999999999987 67899


Q ss_pred             cccchhhhhhhhhhhhh
Q psy2833         198 FFGSVLGVRGALSLVRI  214 (216)
Q Consensus       198 ~~~~~~~~~~~~~~~~~  214 (216)
                      ||++.++.+++++|+-+
T Consensus       495 ~Dp~~vk~~al~~A~e~  511 (529)
T CHL00093        495 IDPAKVTRSALQNAASI  511 (529)
T ss_pred             EEcHHHHHHHHHHHHHH
Confidence            99999999999988643

>KOG0362|consensus

Probab=99.94  E-value=1.8e-26  Score=212.86  Aligned_cols=190  Identities=20%  Similarity=0.319  Sum_probs=169.2

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEe-ecCCCceEEEEEeCCChhh
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYIT-ECQNPKACTILLRGASKDL   83 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~-~~~~~~~~TIllrG~t~~~   83 (216)
                      .+||++-|+|.|.+|-+.    .+|+++++++..+.+   |+|+.|+..++||..++.|. ++...+..|++|||+++.+
T Consensus       304 ~ImVlqi~Sk~eLrrlcr----tvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~  379 (537)
T KOG0362|consen  304 KIMVLQINSKFDLRRLCR----TVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSI  379 (537)
T ss_pred             cEEEEEeccHhhHHHHHH----HcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhh
Confidence            589999999999999887    799999999999875   99999999999999999887 4456789999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833          84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV  158 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~  158 (216)
                      ||++||+++|++..++..+++++++||+|++|++|+++|.+|+     ..+.+++.|++||+.+|++|++|+   |-.++
T Consensus       380 LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEna---gl~~~  456 (537)
T KOG0362|consen  380 LDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENA---GLAVT  456 (537)
T ss_pred             HHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhc---CCcHH
Confidence            9999999999999999999999999999999999999999998     999999999999999999999999   66889


Q ss_pred             HHHHHHHHHHhhhhcCCceEEEEeeccCC-CCCCCCCCcccccchhhhhhhhh
Q psy2833         159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGG-PGLIPGGAEVFFGSVLGVRGALS  210 (216)
Q Consensus       159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-~~~~~~~~gi~~~~~~~~~~~~~  210 (216)
                      |+..    ..|+.|. +.+..++|...+. ..| +.++|+||-...|-.+++-
T Consensus       457 evia----~ly~~h~-~g~~~g~di~~e~~~~d-~~~~~i~D~~~~K~~a~k~  503 (537)
T KOG0362|consen  457 EVIA----KLYAVHQ-GGKNLGMDIEAEGGTID-VREEGIWDTLAVKAQAIKL  503 (537)
T ss_pred             HHHH----HHHHhhc-CCCcceeeeeccccccC-hhhhchHHHHHHHHHHHHH
Confidence            9876    3466666 5556899998884 554 4789999988776666554

>KOG0360|consensus

Probab=99.94  E-value=1.5e-27  Score=219.02  Aligned_cols=176  Identities=23%  Similarity=0.224  Sum_probs=155.5

Q ss_pred             hhcCceeeeeecccC------c---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHH
Q psy2833          29 IQAGKYIDSSIVTLN------H---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVAR   99 (216)
Q Consensus        29 i~~G~~i~~sl~~~~------~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~   99 (216)
                      -+||+++++|+-+++      +   |+|+.|.+.+|||++++.+.+.+.. +|+|+|||+|++.+||+||++||++||++
T Consensus       324 katGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~Vlk  402 (545)
T KOG0360|consen  324 KATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLK  402 (545)
T ss_pred             HhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHH
Confidence            369999999999875      1   8999999999999999999986655 99999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh---
Q psy2833         100 NIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD---  171 (216)
Q Consensus       100 ~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~---  171 (216)
                      ..++++++|||||++|.+|+.+|++|+     +++.++--|+.||.+||++|.-|+   +.+++|+..  .|+.|+.   
T Consensus       403 rtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~na---a~Dstelvt--~lra~Hs~~q  477 (545)
T KOG0360|consen  403 RTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNA---AKDSTELVT--KLRAYHSVSQ  477 (545)
T ss_pred             HHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhh---ccccccccc--cccCCchhhc
Confidence            999999999999999999999999998     899999999999999999999998   668888764  3343332   


Q ss_pred             ---hcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhh
Q psy2833         172 ---NLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSL  211 (216)
Q Consensus       172 ---~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~  211 (216)
                         .-.+..|+|+|+.+|.++|+ -++|++++.++++.-++++
T Consensus       478 ~~p~~~~~k~~GldL~ng~~~dn-~~~g~~ep~~~kvksLk~a  519 (545)
T KOG0360|consen  478 DNPWRLLLKQYGLDLINGKIRDN-KSAGSFEPPIVKVKSLKFA  519 (545)
T ss_pred             cCCccccchhhCccccccEeecc-eeeeeeccceeehhhhHHH
Confidence               23577899999999999987 5789999998887665544

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=99.92  E-value=5.2e-25  Score=212.18  Aligned_cols=196  Identities=12%  Similarity=0.091  Sum_probs=159.0

Q ss_pred             CCcEEEEecCcccccc-cchhhhhhhcCceeee-----eecccCc---ceeceEEEEE-----ECC--------eEEEEE
Q psy2833           6 SAPVLVLSSNTKRDSG-RKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACL-----LGD--------EYFCYI   63 (216)
Q Consensus         6 ~~~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~-----ig~--------~~~~~~   63 (216)
                      ..++++++.-..-+.. ..++...+.||+++++     ++.++.+   |+|+.|++++     +|+        +++++|
T Consensus       324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i  403 (600)
T PLN03167        324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQI  403 (600)
T ss_pred             cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHH
Confidence            4567777665543332 2344445569999999     6777765   9999999998     887        488888


Q ss_pred             eecC------------C------CceEEEE-EeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhh
Q psy2833          64 TECQ------------N------PKACTIL-LRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSAS  124 (216)
Q Consensus        64 ~~~~------------~------~~~~TIl-lrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~  124 (216)
                      ++|.            +      +.++||+ +||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|++
T Consensus       404 ~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~  482 (600)
T PLN03167        404 KNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDA  482 (600)
T ss_pred             HhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHH
Confidence            8764            1      2356776 999999999999999999999999999999 999999999999999998


Q ss_pred             hh-----hhhHH-HHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833         125 KD-----LLNET-ERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF  198 (216)
Q Consensus       125 ~~-----~~~e~-~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~  198 (216)
                      ++     +.+.+ .+.+++||+++|++|++|+   |.++.|+..  .|+  +.   +..++|+|+.++.+.|| .++|||
T Consensus       483 ~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NA---G~d~~~vv~--~L~--~~---~~~~~G~d~~~g~~~dm-~~~GI~  551 (600)
T PLN03167        483 IKDTLENDEQKVGADIVKRALSYPLKLIAKNA---GVNGSVVSE--KVL--SN---DNPKFGYNAATGKYEDL-MAAGII  551 (600)
T ss_pred             HHhcCCChhHHHHHHHHHHHHhcchhhhhhcC---CCCHHHHHH--HHH--hc---CCCCEeEeCCCCcCcch-HhccCe
Confidence            85     45544 8999999999999999999   778888765  232  11   24579999999999987 689999


Q ss_pred             ccchhhhhhhhhhhh
Q psy2833         199 FGSVLGVRGALSLVR  213 (216)
Q Consensus       199 ~~~~~~~~~~~~~~~  213 (216)
                      |+..++.++++++.-
T Consensus       552 Dp~~Vk~~al~~A~~  566 (600)
T PLN03167        552 DPTKVVRCCLEHAAS  566 (600)
T ss_pred             ecHHHHHHHHHHHHH
Confidence            999999998888764

>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1

Probab=99.67  E-value=8.6e-17  Score=140.95  Aligned_cols=97  Identities=23%  Similarity=0.292  Sum_probs=84.4

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeec-ccCc---ceeceEEEEEECC-----eEEEEEeecCCCceEEEEEe
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIV-TLNH---WLCSSQDACLLGD-----EYFCYITECQNPKACTILLR   77 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~-~~~~---g~c~~v~~~~ig~-----~~~~~~~~~~~~~~~TIllr   77 (216)
                      +.++++++-.+.+..|..+    +|||.+++++. .+++   |+|+.|+++++|+     ++|+||++|+.+++|||+||
T Consensus       151 ~gI~~v~~v~~~dl~rIa~----~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLR  226 (261)
T cd03334         151 AGITLVLNVKPSVLERISR----CTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLR  226 (261)
T ss_pred             CCCEEEEecCHHHHHHHHH----HhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEE
Confidence            4678887777766655433    89999999954 6665   9999999999996     69999999999999999999


Q ss_pred             CCChhhHHHHHHHhchhhHHHHHHhcCCeE
Q psy2833          78 GASKDLLNETERNLQDALHVARNIMLEPKL  107 (216)
Q Consensus        78 G~t~~~l~E~ersi~Dal~v~~~~~~~~~v  107 (216)
                      |+|+++++|+||+++||++++++...+.++
T Consensus       227 G~t~~~lde~eR~i~Dal~v~~~~~le~~~  256 (261)
T cd03334         227 GGDLEELKKVKRVVEFMVFAAYHLKLETSF  256 (261)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999877654

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.

>cd03333 chaperonin_like chaperonin_like superfamily

Probab=99.61  E-value=2.2e-15  Score=126.94  Aligned_cols=94  Identities=32%  Similarity=0.430  Sum_probs=81.2

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL   83 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~   83 (216)
                      ..++|++...+++    ++....+|||.++++++++++   |+|+.|+++++|+++|++|++|+.+.+|||+|||||+++
T Consensus       113 ~~I~~v~~~~~~~----l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~  188 (209)
T cd03333         113 AGIMAVRRVKKED----LERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVE  188 (209)
T ss_pred             CCCEEEEeCCHHH----HHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhH
Confidence            4577776633322    333445799999999999886   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcC
Q psy2833          84 LNETERNLQDALHVARNIMLE  104 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~  104 (216)
                      ++|+||+++||++++++++++
T Consensus       189 l~e~kr~l~dal~~~~~~~~~  209 (209)
T cd03333         189 LDEVKRSLHDALCAVRAAVEE  209 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999998764

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.

>KOG0357|consensus

Probab=99.19  E-value=5.5e-12  Score=113.01  Aligned_cols=88  Identities=27%  Similarity=0.389  Sum_probs=80.0

Q ss_pred             HHhcCCeEEe--cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCce
Q psy2833         100 NIMLEPKLVP--GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRV  177 (216)
Q Consensus       100 ~~~~~~~vV~--GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~  177 (216)
                      ..++|.+.|+  -+|+..|          +++|+.|++|||||+|++++.+|++|+|||+.|+.+|..+.+.|.+.+|.+
T Consensus       234 Eqc~nskaVTifvRg~Nkm----------ii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~e  303 (400)
T KOG0357|consen  234 EQCKNSKAVTIFVRGGNKM----------IIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIE  303 (400)
T ss_pred             EecCCCceEEEEEecCcce----------eHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHH
Confidence            4567777777  8888888          999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeccCC----CCCCCCCCcc
Q psy2833         178 VVTLGLHAGG----PGLIPGGAEV  197 (216)
Q Consensus       178 ~~~i~~~~~~----~~~~~~~~gi  197 (216)
                      ||++.+|+.+    |..+++|+|+
T Consensus       304 qya~rafa~ale~ipmalaensgl  327 (400)
T KOG0357|consen  304 QYAFRAFADALESIPMALAENSGL  327 (400)
T ss_pred             HHHHHHHHHHHhhcchhhhhccCC
Confidence            9999999984    6667888875

>KOG0358|consensus

Probab=98.85  E-value=7.1e-10  Score=101.16  Aligned_cols=83  Identities=28%  Similarity=0.340  Sum_probs=74.4

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -+|+..+          .++|++|++|||||+|+.+.+....+||||+.||+++..|..+|....|.+.|++..|+..  
T Consensus       385 ~RGsn~l----------vleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlE  454 (534)
T KOG0358|consen  385 LRGSNKL----------VLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALE  454 (534)
T ss_pred             EecCchh----------hhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHh
Confidence            4566666          8999999999999999999999999999999999999999999999999999999999983  


Q ss_pred             --CCCCCCCCcccccch
Q psy2833         188 --PGLIPGGAEVFFGSV  202 (216)
Q Consensus       188 --~~~~~~~~gi~~~~~  202 (216)
                        |-.+++|+|+.-=.+
T Consensus       455 vIP~tLAeNAGLnpI~~  471 (534)
T KOG0358|consen  455 VIPYTLAENAGLNPIAT  471 (534)
T ss_pred             cccHhHHhhCCCChhhH
Confidence              667899999876543

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=98.82  E-value=9e-10  Score=104.23  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=73.1

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          .++|.+|+++|||+++..++.++++|||||++|+.++.+|++++.+.++.+|++++.|+..  
T Consensus       334 lrg~t~~----------~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~  403 (484)
T cd03342         334 IKGPNDH----------TITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALL  403 (484)
T ss_pred             EeCCCHH----------HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence            5666777          8999999999999999999999999999999999999999999998999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       404 ~ip~~La~NaG~-d~~  418 (484)
T cd03342         404 VIPKTLAENSGL-DVQ  418 (484)
T ss_pred             HHHHHHHHHcCC-CHH
Confidence              6778899994 554

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=98.82  E-value=9.8e-10  Score=104.84  Aligned_cols=81  Identities=30%  Similarity=0.424  Sum_probs=73.6

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          .++|.+|+++|||+++..++.++++|||||++|+.++..|++++.+.++.++++++.|+..  
T Consensus       366 lrG~t~~----------~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale  435 (519)
T TIGR02341       366 LRGATQQ----------ILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALR  435 (519)
T ss_pred             EeCCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Confidence            6777887          8999999999999999999999999999999999999999999988999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|+ |+.
T Consensus       436 ~ip~~La~NaG~-d~~  450 (519)
T TIGR02341       436 QLPTIIADNAGF-DSA  450 (519)
T ss_pred             HHHHHHHHHCCC-CHH
Confidence              7778899996 544

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=98.80  E-value=1.2e-09  Score=104.59  Aligned_cols=83  Identities=17%  Similarity=0.271  Sum_probs=74.7

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +.-||+++.          .++|.+|+++||++++..++.++++|||||++|+.++.+|++++...++.+|+++++|+.+
T Consensus       375 I~lrG~t~~----------~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~A  444 (531)
T TIGR02347       375 ILIKGPNDH----------TIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANA  444 (531)
T ss_pred             EEEeCCCHH----------HHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence            336778888          8999999999999999999999999999999999999999999988899999999999984


Q ss_pred             ----CCCCCCCCcccccc
Q psy2833         188 ----PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 ----~~~~~~~~gi~~~~  201 (216)
                          |+.+++|+|+ |+.
T Consensus       445 Le~ip~~La~NaG~-d~~  461 (531)
T TIGR02347       445 LLVIPKTLAENSGL-DAQ  461 (531)
T ss_pred             HHHHHHHHHHhcCC-CHH
Confidence                7778899995 554

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=98.80  E-value=1.3e-09  Score=103.90  Aligned_cols=81  Identities=27%  Similarity=0.407  Sum_probs=73.6

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          .++|.+|+++|||+++..++.++++|||||++|+.++..|++++.+.++.+++++++|+..  
T Consensus       365 lrG~t~~----------~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe  434 (517)
T cd03336         365 LRGASQQ----------ILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALR  434 (517)
T ss_pred             EeCCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHH
Confidence            6777777          7999999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       435 ~ip~~La~NaG~-d~~  449 (517)
T cd03336         435 QLPTIIADNAGY-DSA  449 (517)
T ss_pred             HHHHHHHHhCCC-CHH
Confidence              7778899995 554

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>CHL00093 groEL chaperonin GroEL

Probab=98.79  E-value=8.1e-09  Score=98.87  Aligned_cols=83  Identities=25%  Similarity=0.328  Sum_probs=74.1

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh-hcCCceEEEEeecc
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD-NLLGRVVVTLGLHA  185 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~-~~~g~~~~~i~~~~  185 (216)
                      .+..||++|.          .+++.+|+++||++++..++.++ +|||||++|+.+|..|++++. ..++.+|+++++|+
T Consensus       377 ~I~irg~t~~----------~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a  445 (529)
T CHL00093        377 VIKVGAATET----------EMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVA  445 (529)
T ss_pred             EEEeccCcHH----------HHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Confidence            3668999999          89999999999999999999885 999999999999999999987 78999999999999


Q ss_pred             CC----CCCCCCCCcccccc
Q psy2833         186 GG----PGLIPGGAEVFFGS  201 (216)
Q Consensus       186 ~~----~~~~~~~~gi~~~~  201 (216)
                      .+    |+.+++|+|+ |+.
T Consensus       446 ~AL~~ip~~La~NaG~-d~~  464 (529)
T CHL00093        446 RAILAPLKRIAENAGK-NGS  464 (529)
T ss_pred             HHHHHHHHHHHHhcCC-CHH
Confidence            84    6678899996 443

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=98.79  E-value=1.2e-09  Score=103.18  Aligned_cols=74  Identities=47%  Similarity=0.581  Sum_probs=68.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCcccccc
Q psy2833         127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEVFFGS  201 (216)
Q Consensus       127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi~~~~  201 (216)
                      .+++.+|+++|||+++..++.+++++||||++||.+|.+|++++.+.++.+|+++++|+.+    |+.+++|+|+ |+.
T Consensus       338 ~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~-d~~  415 (480)
T cd03337         338 VLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGA-NVI  415 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCC-CHH
Confidence            8999999999999999999999999999999999999999999988999999999999984    7778889995 443

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=98.78  E-value=1.6e-09  Score=103.62  Aligned_cols=81  Identities=26%  Similarity=0.405  Sum_probs=73.5

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          .++|.+|+++|||+++..++.++++|||||++|+.+|..|++++...++.++++++.|+..  
T Consensus       377 lrG~t~~----------~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~  446 (533)
T PTZ00212        377 LRGASTH----------ILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALR  446 (533)
T ss_pred             EECCChh----------HHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            6777777          7999999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|+ |+.
T Consensus       447 ~ip~~La~NaG~-d~~  461 (533)
T PTZ00212        447 QIPTIIADNGGY-DSA  461 (533)
T ss_pred             HHHHHHHHhCCC-CHH
Confidence              7778899995 554

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=98.77  E-value=4.5e-09  Score=100.34  Aligned_cols=83  Identities=27%  Similarity=0.360  Sum_probs=73.9

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +.-||+++.          .+++.+|+++|||+++..++.++++|||||++||.++..|++++...++.+++++++|+.+
T Consensus       376 IllrG~t~~----------~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~a  445 (526)
T cd03339         376 IFIRGGNKM----------IIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADA  445 (526)
T ss_pred             EEEECCCHH----------HHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            336777787          7999999999999999999999999999999999999999999988999999999999984


Q ss_pred             ----CCCCCCCCcccccc
Q psy2833         188 ----PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 ----~~~~~~~~gi~~~~  201 (216)
                          |+.+++|+|. |+.
T Consensus       446 L~~ip~~L~~NaG~-d~~  462 (526)
T cd03339         446 LESIPLALAENSGL-NPI  462 (526)
T ss_pred             HHHHHHHHHHHCCC-CHH
Confidence                6778889995 443

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=98.77  E-value=1.9e-09  Score=102.90  Aligned_cols=81  Identities=44%  Similarity=0.512  Sum_probs=72.5

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          .+++.+|+++|||+++..++.++.+|||||++||.+|..|++++...++.+++++++|+.+  
T Consensus       372 LrG~t~~----------~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~  441 (525)
T TIGR02344       372 LRGASKD----------VLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALE  441 (525)
T ss_pred             EEcCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            5566666          8999999999999999999999999999999999999999999988999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|+ |+.
T Consensus       442 ~ip~~La~NaG~-d~~  456 (525)
T TIGR02344       442 IIPRTLAQNCGV-NVI  456 (525)
T ss_pred             HHHHHHHHHCCC-CHH
Confidence              7778899995 544

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>KOG0361|consensus

Probab=98.76  E-value=1.6e-09  Score=99.00  Aligned_cols=98  Identities=24%  Similarity=0.331  Sum_probs=75.8

Q ss_pred             HHhchhhHHHHHHhcCCeE--EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHH
Q psy2833          89 RNLQDALHVARNIMLEPKL--VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS  166 (216)
Q Consensus        89 rsi~Dal~v~~~~~~~~~v--V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L  166 (216)
                      |.+..--.-+...+...+.  +.-+|..|.          .+.|++|++|||++++++.|+.+.+|+||||+||++|+.|
T Consensus       351 ~QvG~eRyN~Fegcp~aktcTliLRGgaeq----------fieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~l  420 (543)
T KOG0361|consen  351 RQVGGERYNLFEGCPKAKTCTLILRGGAEQ----------FIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYL  420 (543)
T ss_pred             HhhcchhhhhhcCCCccceeEEEEeccHHH----------HHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHH
Confidence            4455544444444444322  223344444          6899999999999999999999999999999999999999


Q ss_pred             HHhhhhcCCceEEEEeeccCC----CCCCCCCCc
Q psy2833         167 SCFQDNLLGRVVVTLGLHAGG----PGLIPGGAE  196 (216)
Q Consensus       167 ~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~g  196 (216)
                      ++|+.++.|++|+-+++++..    |+.+..|+|
T Consensus       421 Rd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaG  454 (543)
T KOG0361|consen  421 RDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAG  454 (543)
T ss_pred             HHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcC
Confidence            999999999999999999883    555555665

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=98.75  E-value=2.2e-09  Score=102.38  Aligned_cols=83  Identities=28%  Similarity=0.387  Sum_probs=74.5

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +.-||+++.          ..+|.+|+++||++++..++.++.+|||||++||.+|.+|++++...++.+|++++.|+..
T Consensus       366 IllrG~t~~----------~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~a  435 (517)
T TIGR02342       366 VLLRGSNKL----------VIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADA  435 (517)
T ss_pred             EEEeCCcHH----------HHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            337777888          8999999999999999999999999999999999999999999988999999999999984


Q ss_pred             ----CCCCCCCCcccccc
Q psy2833         188 ----PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 ----~~~~~~~~gi~~~~  201 (216)
                          |+.+++|+|. |+.
T Consensus       436 l~~ip~~La~NaG~-d~~  452 (517)
T TIGR02342       436 LEVIPYTLAENAGL-NPI  452 (517)
T ss_pred             HHHHHHHHHHHcCC-CHH
Confidence                7778899995 553

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=98.75  E-value=2.2e-09  Score=102.72  Aligned_cols=78  Identities=28%  Similarity=0.422  Sum_probs=71.9

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          ..+|.+|+++|||+++..++.++++|||||++||.++.+|++++.+.++.+|+++++|+..  
T Consensus       382 lrG~t~~----------~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe  451 (532)
T TIGR02343       382 IRGGNKM----------IIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALE  451 (532)
T ss_pred             EECCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence            6777777          8999999999999999999999999999999999999999999988999999999999984  


Q ss_pred             --CCCCCCCCcc
Q psy2833         188 --PGLIPGGAEV  197 (216)
Q Consensus       188 --~~~~~~~~gi  197 (216)
                        |+.+++|+|.
T Consensus       452 ~ip~~La~NaG~  463 (532)
T TIGR02343       452 EIPMALAENSGL  463 (532)
T ss_pred             HHHHHHHHHCCC
Confidence              6678889986

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=98.74  E-value=2.3e-09  Score=102.39  Aligned_cols=84  Identities=32%  Similarity=0.412  Sum_probs=74.7

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||+++.          .++|.+|+++|||+++..++.++++|||||++|+.++..|++++...++.+++++++|+.
T Consensus       366 TIllrG~t~~----------~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~  435 (527)
T cd03335         366 SIILRGANDF----------MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAE  435 (527)
T ss_pred             EEEEeCCcHH----------HHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            3337788887          799999999999999999999999999999999999999999999899999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      .    |+.+++|+|. |+.
T Consensus       436 aL~~ip~~La~NaG~-d~~  453 (527)
T cd03335         436 ALLVIPKTLAVNAAK-DAT  453 (527)
T ss_pred             HHHHHHHHHHHHCCC-CHH
Confidence            4    6667889994 554

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=98.70  E-value=3.9e-09  Score=101.06  Aligned_cols=84  Identities=32%  Similarity=0.438  Sum_probs=74.4

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||+++.          ..+|.+|+++|||+++..++.++++|||||++|+.++.+|++++...++.++++++.|+.
T Consensus       370 TIlirG~t~~----------~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~  439 (536)
T TIGR02340       370 SIILRGANDF----------MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAE  439 (536)
T ss_pred             EEEEeCCcHH----------HHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Confidence            3447888888          899999999999999999999999999999999999999999988889999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      .    |+.+++|+|. |+.
T Consensus       440 AL~~ip~~La~NaG~-d~~  457 (536)
T TIGR02340       440 ALLIIPKVLAVNAAL-DST  457 (536)
T ss_pred             HHHHHHHHHHHHCCC-CHH
Confidence            4    5567888995 543

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03343 cpn60 cpn60 chaperonin family

Probab=98.70  E-value=3.8e-09  Score=100.48  Aligned_cols=83  Identities=28%  Similarity=0.402  Sum_probs=72.9

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +.-||+++.          ..++.+|+++|||+++..++.++++|||||++|+.++..|++++...++.+++++++|+..
T Consensus       366 I~lrG~t~~----------~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~a  435 (517)
T cd03343         366 ILLRGGTEH----------VVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADA  435 (517)
T ss_pred             EEEECCcHH----------HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            335666676          7999999999999999999999999999999999999999999888899999999999984


Q ss_pred             ----CCCCCCCCcccccc
Q psy2833         188 ----PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 ----~~~~~~~~gi~~~~  201 (216)
                          |+.+++|+|+ |+.
T Consensus       436 L~~ip~~L~~NaG~-d~~  452 (517)
T cd03343         436 LEEIPRTLAENAGL-DPI  452 (517)
T ss_pred             HHHHHHHHHHHcCC-CHH
Confidence                6667888985 443

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=98.70  E-value=3.9e-09  Score=100.76  Aligned_cols=81  Identities=27%  Similarity=0.411  Sum_probs=72.7

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          .++|.+|+++|||+++..++.++.+|||||++|+.++.+|++++.+.++.++++++.|+..  
T Consensus       371 lrG~t~~----------~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~  440 (522)
T TIGR02345       371 LRGGAEQ----------FIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALE  440 (522)
T ss_pred             EECCCHH----------HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            6677777          8999999999999999999999999999999999999999999988999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       441 ~ip~~La~NaG~-d~~  455 (522)
T TIGR02345       441 IIPRSLCENAGF-DSI  455 (522)
T ss_pred             HHHHHHHHHCCC-CHH
Confidence              6667889995 443

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>KOG0363|consensus

Probab=98.69  E-value=1e-08  Score=93.32  Aligned_cols=88  Identities=26%  Similarity=0.357  Sum_probs=76.4

Q ss_pred             eEEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeecc
Q psy2833         106 KLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHA  185 (216)
Q Consensus       106 ~vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~  185 (216)
                      +.+.-+|++..          +++|++|++|||||++..+..+.+.+.|||+.||.+++.+.++|++.+|++..+|.+|+
T Consensus       366 ctIVlrGat~q----------~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfa  435 (527)
T KOG0363|consen  366 CTIVLRGATQQ----------ILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFA  435 (527)
T ss_pred             eEEEEecccHH----------HHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHH
Confidence            44556788887          89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC----CCCCCCCCcccccchh
Q psy2833         186 GG----PGLIPGGAEVFFGSVL  203 (216)
Q Consensus       186 ~~----~~~~~~~~gi~~~~~~  203 (216)
                      ..    |..++.|+|.=...++
T Consensus       436 rAL~qlPtiiaDNaG~dsaelv  457 (527)
T KOG0363|consen  436 RALRQLPTIIADNAGYDSAELV  457 (527)
T ss_pred             HHHHhcchhhhccCCCCHHHHH
Confidence            84    5556777875444443

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.3e-09  Score=101.51  Aligned_cols=101  Identities=26%  Similarity=0.269  Sum_probs=83.4

Q ss_pred             hchhhHHHHHHhcC--CeE--EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHH
Q psy2833          91 LQDALHVARNIMLE--PKL--VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS  166 (216)
Q Consensus        91 i~Dal~v~~~~~~~--~~v--V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L  166 (216)
                      +.|.-+.+-..+++  +++  +--||++|+          ..++.+|+++|||++++.++.+++++||||+.|+.+++.|
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~tI~vrgate~----------~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L  411 (524)
T COG0459         342 TGDYDMEKLQERKAKAGGVATILVRGATEV----------ELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRL  411 (524)
T ss_pred             ccchhhhhhhhhhhcCCCeEEEEECCccHh----------HHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHH
Confidence            55555555555554  444  448999999          8899999999999999999999999999999999999999


Q ss_pred             HHhhhhcCC-ceEEEEeeccCC----CCCCCCCCcccccch
Q psy2833         167 SCFQDNLLG-RVVVTLGLHAGG----PGLIPGGAEVFFGSV  202 (216)
Q Consensus       167 ~~~a~~~~g-~~~~~i~~~~~~----~~~~~~~~gi~~~~~  202 (216)
                      ++++...+| .+|+++.+|+.+    |+.+++|+|. |+..
T Consensus       412 ~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~-d~~~  451 (524)
T COG0459         412 REYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGL-DPIE  451 (524)
T ss_pred             HhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHH
Confidence            998655555 999999999984    6668899998 6653

>PTZ00114 Heat shock protein 60; Provisional

Probab=98.68  E-value=1.5e-08  Score=97.52  Aligned_cols=83  Identities=25%  Similarity=0.358  Sum_probs=72.6

Q ss_pred             CCeEEe--cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh--hcCCceEE
Q psy2833         104 EPKLVP--GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD--NLLGRVVV  179 (216)
Q Consensus       104 ~~~vV~--GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~--~~~g~~~~  179 (216)
                      ++++++  -||+++.          .+++.+|+++|||+++..++.++ +|||||++|+.+|..|++++.  ..++.+++
T Consensus       385 ~~~~~tI~i~G~t~~----------~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~  453 (555)
T PTZ00114        385 SGGVAVIKVGGASEV----------EVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQRT  453 (555)
T ss_pred             CCCeEEEEecCCCHH----------HHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHHH
Confidence            344444  8899998          79999999999999999999855 999999999999999999986  57899999


Q ss_pred             EEeeccCC----CCCCCCCCcc
Q psy2833         180 TLGLHAGG----PGLIPGGAEV  197 (216)
Q Consensus       180 ~i~~~~~~----~~~~~~~~gi  197 (216)
                      ++++|+.+    |+.+++|+|.
T Consensus       454 ~i~~~a~AL~~ip~~La~NaG~  475 (555)
T PTZ00114        454 GVKIVRNALRLPTKQIAENAGV  475 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            99999984    6668899995

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=98.68  E-value=4.2e-09  Score=100.19  Aligned_cols=84  Identities=29%  Similarity=0.391  Sum_probs=74.3

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||+++.          ..+|.+|+++|||+++..++.++++|||||++|+.++.+|++++.+.++.+|+++++|+.
T Consensus       364 TIllrG~t~~----------~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~  433 (515)
T cd03338         364 TILVRGSNKL----------VLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFAD  433 (515)
T ss_pred             EEEEeCCcHH----------HHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence            3336777887          799999999999999999999999999999999999999999988889999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      .    |+.+++|+|+ |+.
T Consensus       434 al~~ip~~L~~NaG~-d~~  451 (515)
T cd03338         434 ALEVIPYTLAENAGL-NPI  451 (515)
T ss_pred             HHHHHHHHHHHHCCC-CHH
Confidence            4    6668889996 443

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=98.68  E-value=3.8e-09  Score=100.62  Aligned_cols=73  Identities=30%  Similarity=0.496  Sum_probs=67.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCccccc
Q psy2833         127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEVFFG  200 (216)
Q Consensus       127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi~~~  200 (216)
                      .+++.+|+++|||+++..++.++++|||||++||.++.+|++++...++.+++++++|+..    |+.+++|+|+ |+
T Consensus       378 ~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~-d~  454 (519)
T TIGR02339       378 VVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGL-DP  454 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC-CH
Confidence            7999999999999999999999999999999999999999999988899999999999984    6667889985 44

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>TIGR02348 GroEL chaperonin GroL

Probab=98.67  E-value=1.5e-08  Score=96.96  Aligned_cols=78  Identities=21%  Similarity=0.255  Sum_probs=71.1

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +.-||+++.          ..++.+|+++|||+++++++.++ +|||||++|+.++..|++ +...++.+++++++|+..
T Consensus       377 I~irG~t~~----------~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~A  444 (524)
T TIGR02348       377 IKVGAATET----------EMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRA  444 (524)
T ss_pred             EEecCCCHH----------HHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHH
Confidence            568999998          89999999999999999999885 999999999999999998 778899999999999984


Q ss_pred             ----CCCCCCCCcc
Q psy2833         188 ----PGLIPGGAEV  197 (216)
Q Consensus       188 ----~~~~~~~~gi  197 (216)
                          |+.+++|+|+
T Consensus       445 L~~ip~~La~NaG~  458 (524)
T TIGR02348       445 LEAPLRQIAENAGK  458 (524)
T ss_pred             HHHHHHHHHHhCCC
Confidence                6668889988

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=98.64  E-value=6.8e-09  Score=99.35  Aligned_cols=80  Identities=21%  Similarity=0.400  Sum_probs=72.6

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +.-||+++.          ..+|.+|++.|||+++..++.++++|||||++||.++..|++++...++.++++++.|+..
T Consensus       367 I~lrG~t~~----------~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~a  436 (531)
T TIGR02346       367 IILRGSTKN----------LLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEA  436 (531)
T ss_pred             EEEECCCHH----------HHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            337788888          7999999999999999999999999999999999999999999888899999999999984


Q ss_pred             ----CCCCCCCCcc
Q psy2833         188 ----PGLIPGGAEV  197 (216)
Q Consensus       188 ----~~~~~~~~gi  197 (216)
                          |+.+++|+|+
T Consensus       437 L~~ip~~L~~NaG~  450 (531)
T TIGR02346       437 FEIIPRTLAENAGL  450 (531)
T ss_pred             HHHHHHHHHHhCCC
Confidence                6667889996

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=98.63  E-value=9.3e-09  Score=98.77  Aligned_cols=82  Identities=26%  Similarity=0.360  Sum_probs=73.1

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||+++.          .+++.+|+++|||+++..++.++ +|||||++|+.+|..|++++ ..++.+|+++++|+.
T Consensus       377 TI~irG~t~~----------~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~  444 (542)
T PRK12849        377 VIKVGAATEV----------ELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRR  444 (542)
T ss_pred             EEEeCCCCHH----------HHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHH
Confidence            3448899998          89999999999999999999885 99999999999999999999 899999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      .    |+.+++|+|+ ++.
T Consensus       445 Al~~ip~~La~NaG~-d~~  462 (542)
T PRK12849        445 ALEAPLRQIAENAGL-DGS  462 (542)
T ss_pred             HHHHHHHHHHHHCCC-CHH
Confidence            4    6678899994 544

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=98.62  E-value=8.4e-09  Score=97.34  Aligned_cols=81  Identities=21%  Similarity=0.373  Sum_probs=72.6

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          ..+|.+|+++|||+++..++.++++|||||++|+.++..|++++.+.++.++++++.|+..  
T Consensus       321 lrG~t~~----------~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~  390 (472)
T cd03341         321 LRGATQN----------ILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFE  390 (472)
T ss_pred             EECCCHH----------HHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            6677777          7999999999999999999999999999999999999999999888899999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|+ |+.
T Consensus       391 ~ip~~L~~NaG~-d~~  405 (472)
T cd03341         391 VVPRTLAENAGL-DAT  405 (472)
T ss_pred             HHHHHHHHHCCC-CHH
Confidence              6668899996 444

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=98.60  E-value=1.6e-08  Score=97.05  Aligned_cols=79  Identities=22%  Similarity=0.323  Sum_probs=71.6

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||+++.          ..++.+|+++|||+++..++.++ +|||||++|+.+|..|++++.. ++.+++++++|+.
T Consensus       378 tI~irG~t~~----------~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~  445 (541)
T PRK12851        378 VIRVGASTEV----------EVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRR  445 (541)
T ss_pred             EEEecCCCHH----------HHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHH
Confidence            3558999998          89999999999999999999885 9999999999999999999876 8999999999998


Q ss_pred             C----CCCCCCCCcc
Q psy2833         187 G----PGLIPGGAEV  197 (216)
Q Consensus       187 ~----~~~~~~~~gi  197 (216)
                      .    |+.+++|+|+
T Consensus       446 AL~~ip~~La~NaG~  460 (541)
T PRK12851        446 ALEAPVRQIAENAGA  460 (541)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            4    6668889998

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=98.60  E-value=8e-09  Score=98.52  Aligned_cols=71  Identities=27%  Similarity=0.487  Sum_probs=66.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCcc
Q psy2833         127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEV  197 (216)
Q Consensus       127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi  197 (216)
                      .++|.+|+++|||+++..++.++.++||||++|+.++.+|++++...++.+++++++|+..    |+.+++|+|.
T Consensus       377 ~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~  451 (522)
T cd03340         377 FIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGF  451 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7899999999999999999999999999999999999999999988899999999999984    6667889996

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03344 GroEL GroEL_like type I chaperonin

Probab=98.60  E-value=1.7e-08  Score=96.47  Aligned_cols=79  Identities=28%  Similarity=0.394  Sum_probs=71.4

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||+++.          ..++.+|+++|||+++..++.++ +|||||++|+.++..|++++. .++.+++++++++.
T Consensus       375 TI~irG~t~~----------~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~  442 (520)
T cd03344         375 VIKVGGATEV----------ELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRR  442 (520)
T ss_pred             EEEEecCcHH----------HHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Confidence            4448889998          89999999999999999999885 999999999999999999998 99999999999998


Q ss_pred             C----CCCCCCCCcc
Q psy2833         187 G----PGLIPGGAEV  197 (216)
Q Consensus       187 ~----~~~~~~~~gi  197 (216)
                      +    |+.+++|+|.
T Consensus       443 Al~~ip~~La~NaG~  457 (520)
T cd03344         443 ALEAPLRQIAENAGV  457 (520)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            4    6667889995

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=98.59  E-value=3e-08  Score=95.34  Aligned_cols=79  Identities=23%  Similarity=0.336  Sum_probs=71.2

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||+++.          ..++.+|+++|||+++..++.+ .+|||||++|+.++..|+++ ...++.+|+++++|+.
T Consensus       378 tI~irG~t~~----------~l~E~er~i~DAl~~~k~a~~~-g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~  445 (544)
T PRK12850        378 VIRVGGATEV----------EVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRARSALRGL-KGANADETAGIDIVRR  445 (544)
T ss_pred             EEEECCCcHH----------HHHHHHHHHHHHHHHHHHHHhc-CCccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHH
Confidence            3448999998          8999999999999999999988 59999999999999999998 6789999999999998


Q ss_pred             C----CCCCCCCCcc
Q psy2833         187 G----PGLIPGGAEV  197 (216)
Q Consensus       187 ~----~~~~~~~~gi  197 (216)
                      +    |+.+++|+|+
T Consensus       446 Al~~ip~~La~NaG~  460 (544)
T PRK12850        446 ALEEPLRQIATNAGF  460 (544)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            4    6668889988

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=98.56  E-value=1.8e-08  Score=96.73  Aligned_cols=78  Identities=24%  Similarity=0.383  Sum_probs=71.3

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +.-||+++.          ..++.+|+++|||++++.++.++ +|||||++|+.++..|+++ ...++.+|+++++|+..
T Consensus       378 I~irG~t~~----------~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~A  445 (542)
T PRK00013        378 IKVGAATEV----------EMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRA  445 (542)
T ss_pred             EEecCCCHH----------HHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHH
Confidence            668999999          89999999999999999999885 9999999999999999998 77899999999999984


Q ss_pred             ----CCCCCCCCcc
Q psy2833         188 ----PGLIPGGAEV  197 (216)
Q Consensus       188 ----~~~~~~~~gi  197 (216)
                          |+.+++|+|+
T Consensus       446 l~~ip~~La~NaG~  459 (542)
T PRK00013        446 LEAPLRQIAENAGL  459 (542)
T ss_pred             HHHHHHHHHHHcCC
Confidence                6668899996

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=98.55  E-value=1.8e-08  Score=96.73  Aligned_cols=84  Identities=24%  Similarity=0.329  Sum_probs=73.5

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||++|.          .+++.+|+++||++++..++.++ +|||||++|+.++..|++++.. ++.+|+++++|+.
T Consensus       378 tI~irG~t~~----------~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~  445 (545)
T PRK12852        378 VIRVGGATEV----------EVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGINIVLK  445 (545)
T ss_pred             EEEECCCCHH----------HHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHH
Confidence            3558999999          89999999999999999999885 9999999999999999999877 8889999999998


Q ss_pred             C----CCCCCCCCcccccch
Q psy2833         187 G----PGLIPGGAEVFFGSV  202 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~~  202 (216)
                      .    |+.+++|+|.--..+
T Consensus       446 AL~~ip~~La~NaG~d~~~v  465 (545)
T PRK12852        446 ALEAPIRQIAENAGVEGSIV  465 (545)
T ss_pred             HHHHHHHHHHHHcCCCHHHH
Confidence            4    666889999844333

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=98.55  E-value=1.4e-08  Score=95.23  Aligned_cols=72  Identities=31%  Similarity=0.455  Sum_probs=66.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCccc
Q psy2833         127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEVF  198 (216)
Q Consensus       127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi~  198 (216)
                      .+++.+|+++|||+++..++.++.++||||++|+.++..|++++.+.++.++++++.|+..    |+.+++|+|+-
T Consensus       324 ~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d  399 (464)
T cd00309         324 ELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLD  399 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            7899999999999999999999999999999999999999999988999999999999984    66678888853

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>PRK14104 chaperonin GroEL; Provisional

Probab=98.48  E-value=1e-07  Score=91.66  Aligned_cols=79  Identities=23%  Similarity=0.295  Sum_probs=69.9

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||++|.          .+++.+|+++|||+++..++.++ ++||||++|+.++..|+++. ..++.++++++.|+.
T Consensus       378 tI~irG~t~~----------~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~  445 (546)
T PRK14104        378 VIRVGGATEV----------EVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRK  445 (546)
T ss_pred             EEEecCCCHH----------HHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHH
Confidence            4458999999          89999999999999999999886 99999999999999999884 457899999999988


Q ss_pred             ----CCCCCCCCCcc
Q psy2833         187 ----GPGLIPGGAEV  197 (216)
Q Consensus       187 ----~~~~~~~~~gi  197 (216)
                          .|+.+++|+|+
T Consensus       446 Al~~ip~~La~NaG~  460 (546)
T PRK14104        446 ALSAPARQIAINAGE  460 (546)
T ss_pred             HHHhhHHHHHHhCCC
Confidence                36668899996

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=98.40  E-value=1.6e-07  Score=91.28  Aligned_cols=81  Identities=22%  Similarity=0.277  Sum_probs=69.2

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEE-Eeecc
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVT-LGLHA  185 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~-i~~~~  185 (216)
                      ++..||++|.          .++|.+|+++|||++++.++.++ +|||||++|+.++..|++++...++.+|+. ++.+.
T Consensus       432 iI~vgG~t~~----------~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~  500 (600)
T PLN03167        432 VIQVGAQTET----------ELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVK  500 (600)
T ss_pred             EEEecCCcHH----------HHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence            3448999998          78999999999999999999988 999999999999999999988888888854 55544


Q ss_pred             C----CCCCCCCCCccc
Q psy2833         186 G----GPGLIPGGAEVF  198 (216)
Q Consensus       186 ~----~~~~~~~~~gi~  198 (216)
                      .    -|+.+++|+|+=
T Consensus       501 ~Al~~p~r~La~NAG~d  517 (600)
T PLN03167        501 RALSYPLKLIAKNAGVN  517 (600)
T ss_pred             HHHhcchhhhhhcCCCC
Confidence            3    357789999983

>KOG0362|consensus

Probab=98.36  E-value=1.1e-07  Score=89.13  Aligned_cols=84  Identities=23%  Similarity=0.383  Sum_probs=75.6

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -+||+..          .++.++|++.|++...+....+++.+||.|++|+.++..|.+|+...+|.+||++..|+.+  
T Consensus       372 LRgst~s----------~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale  441 (537)
T KOG0362|consen  372 LRGATQS----------ILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALE  441 (537)
T ss_pred             Ecccchh----------hHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhc
Confidence            5677776          8999999999999999999999999999999999999999999999999999999999995  


Q ss_pred             --CCCCCCCCcccccchh
Q psy2833         188 --PGLIPGGAEVFFGSVL  203 (216)
Q Consensus       188 --~~~~~~~~gi~~~~~~  203 (216)
                        |+.+++|+|+.-.=++
T Consensus       442 ~~PktlaEnagl~~~evi  459 (537)
T KOG0362|consen  442 VLPKTLAENAGLAVTEVI  459 (537)
T ss_pred             cccHhHHHhcCCcHHHHH
Confidence              7778899998654433

>KOG0364|consensus

Probab=98.27  E-value=1.1e-06  Score=81.59  Aligned_cols=97  Identities=40%  Similarity=0.506  Sum_probs=82.1

Q ss_pred             hchhhHHHHHHhcCCeE--EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHH
Q psy2833          91 LQDALHVARNIMLEPKL--VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSC  168 (216)
Q Consensus        91 i~Dal~v~~~~~~~~~v--V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~  168 (216)
                      +.|--..+...|++|+.  +.++|.+.-          +++|.+|.+.||+.+-++++..++.+|||||+||.+|+.|++
T Consensus       351 ~gdeyf~f~~~Ck~pkaCtillrg~skd----------il~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~q  420 (527)
T KOG0364|consen  351 IGDEYFTFFTDCKEPKACTILLRGPSKD----------ILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQ  420 (527)
T ss_pred             cCchhhhhhhhcCCCcceEEEeccCchh----------HHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHH
Confidence            45667777888888854  448888777          899999999999999999999999999999999999999999


Q ss_pred             hhhhcCCceEEEEeeccCC----CCCCCCCCcc
Q psy2833         169 FQDNLLGRVVVTLGLHAGG----PGLIPGGAEV  197 (216)
Q Consensus       169 ~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi  197 (216)
                      .+....|.+++-..+.+++    |+.+.+|.|.
T Consensus       421 ksa~~~GVekwPY~Ava~AlEviPrtliqncGa  453 (527)
T KOG0364|consen  421 KSALMTGVEKWPYGAVAGALEVIPRTLIQNCGA  453 (527)
T ss_pred             HHhhccchhccchhhhhcCceeccHHHHhhcCc
Confidence            9999999998888888775    4444566665

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=98.08  E-value=5.2e-07  Score=84.26  Aligned_cols=81  Identities=30%  Similarity=0.477  Sum_probs=70.8

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-+|.++.          ..++.+++++|||.++..++.++.++||||++|+.+++.|++++.+.++.+++++++++.
T Consensus       333 Till~g~t~~----------~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~  402 (485)
T PF00118_consen  333 TILLRGPTEF----------ELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFAD  402 (485)
T ss_dssp             EEEEEESSHH----------HHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred             EEEeccccch----------hHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHH
Confidence            3336677777          789999999999999999999999999999999999999999999999999999999998


Q ss_pred             C----CCCCCCCCcc
Q psy2833         187 G----PGLIPGGAEV  197 (216)
Q Consensus       187 ~----~~~~~~~~gi  197 (216)
                      .    |..+..|+|.
T Consensus       403 aL~~ip~~L~~NaG~  417 (485)
T PF00118_consen  403 ALESIPKTLAQNAGL  417 (485)
T ss_dssp             HTTHHHHHHHHHTTS
T ss_pred             HHHHhhhhhhhccCC
Confidence            5    4445677776

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>KOG0360|consensus

Probab=97.96  E-value=1.6e-06  Score=81.11  Aligned_cols=70  Identities=33%  Similarity=0.466  Sum_probs=61.9

Q ss_pred             HHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         117 AVSHVSASKD--LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       117 ~ls~~L~~~~--~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      ..|..|+.-.  ..+|.+|+.+|||++++++|..+..+||||++|..++..|+.++.+...++|.++-.|+.
T Consensus       374 ~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~  445 (545)
T KOG0360|consen  374 SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAA  445 (545)
T ss_pred             eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHH
Confidence            3444555544  899999999999999999999999999999999999999999999999999998887774

>KOG0230|consensus

Probab=97.86  E-value=4.1e-06  Score=86.78  Aligned_cols=86  Identities=24%  Similarity=0.356  Sum_probs=72.6

Q ss_pred             hhhhcCceeeeeecccCc---ceeceEEEEEEC-----CeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHH
Q psy2833          27 ENIQAGKYIDSSIVTLNH---WLCSSQDACLLG-----DEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVA   98 (216)
Q Consensus        27 ~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig-----~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~   98 (216)
                      +.=+|||.|+++++.++.   |+|+.|+++.+-     .+.++||++|+.+.+|||+|||.....|.++++-++-.+...
T Consensus       481 IsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aa  560 (1598)
T KOG0230|consen  481 ISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAA  560 (1598)
T ss_pred             HHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHH
Confidence            333699999999999876   999999998775     457889999999999999999999999999999999888888


Q ss_pred             HHHhcCCeEEecCC
Q psy2833          99 RNIMLEPKLVPGGG  112 (216)
Q Consensus        99 ~~~~~~~~vV~GGG  112 (216)
                      .+..-+..++.--|
T Consensus       561 y~l~LE~SflaDe~  574 (1598)
T KOG0230|consen  561 YHLALETSFLADEG  574 (1598)
T ss_pred             HHHHHhhhhhhccC
Confidence            77766555554333

>KOG0356|consensus

Probab=97.62  E-value=0.00012  Score=69.75  Aligned_cols=121  Identities=20%  Similarity=0.144  Sum_probs=100.0

Q ss_pred             ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHH
Q psy2833          70 KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARN  144 (216)
Q Consensus        70 ~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~  144 (216)
                      ...+|-+-|.|+..++|-+..+.||+++.+.++.++ +|||||.....++..|.+..     ..+-....+++||..-..
T Consensus       389 gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~  467 (550)
T KOG0356|consen  389 GVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQ  467 (550)
T ss_pred             CeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHH
Confidence            589999999999999999999999999999998887 89999999999999998875     455568899999999999


Q ss_pred             HHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhh
Q psy2833         145 IMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGV  205 (216)
Q Consensus       145 ~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~  205 (216)
                      +++.|+++-|.-..+-     +.+        +.||.|+-.+++.|+ -++|+-|+..+=.
T Consensus       468 ~IakNAGvdg~~vv~K-----v~~--------~~~gyda~~~ey~dl-v~~GiidP~kVvr  514 (550)
T KOG0356|consen  468 TIAKNAGVDGSVVVEK-----VLN--------DDYGYDAAKGEYVDL-VEAGIIDPTKVVR  514 (550)
T ss_pred             HHHHhcCCchHHHHHH-----HHh--------hhhhhhhhcccHHHH-HhccCCChHHHHH
Confidence            9999997644332221     121        279999999999876 6799999985533

>KOG0359|consensus

Probab=97.08  E-value=0.00012  Score=68.31  Aligned_cols=96  Identities=18%  Similarity=0.255  Sum_probs=74.3

Q ss_pred             hchhhHHHHHHhcCCeEEe--cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHH
Q psy2833          91 LQDALHVARNIMLEPKLVP--GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSC  168 (216)
Q Consensus        91 i~Dal~v~~~~~~~~~vV~--GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~  168 (216)
                      +.+....|..-+.+|+-++  -.|-...          -...+..++.|+|..+.++|.++.++||+|+.|..++.+|+.
T Consensus       347 lGEEkfTFIE~~~~p~S~TiLikgpnkh----------t~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~  416 (520)
T KOG0359|consen  347 LGEEKFTFIEKCNNPSSVTILIKGPNKH----------TITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRE  416 (520)
T ss_pred             ccceeeEeeecCCCCcceEEEEeCCccc----------hHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHH
Confidence            3334444555556665554  4455444          455678889999999999999999999999999999999998


Q ss_pred             hhhhcCCceEEEEeeccCC----CCCCCCCCc
Q psy2833         169 FQDNLLGRVVVTLGLHAGG----PGLIPGGAE  196 (216)
Q Consensus       169 ~a~~~~g~~~~~i~~~~~~----~~~~~~~~g  196 (216)
                      ...+.+|+.+.|+.+|+..    |..++.|.|
T Consensus       417 ~k~~vkgra~~g~~afa~all~ipk~La~nsg  448 (520)
T KOG0359|consen  417 SKKSVKGRAYLGVKAFANALLVIPKTLAKNSG  448 (520)
T ss_pred             hhhccCchhhhhHHHHHhhhhhhhHHHHHhcC
Confidence            8888999999999999985    555555555

>KOG0356|consensus

Probab=93.42  E-value=0.16  Score=48.82  Aligned_cols=85  Identities=26%  Similarity=0.307  Sum_probs=59.2

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      ++--||.+|.+          ..+=...+.|||.+.+..+.++ ++||||..-+.++..|.+.....+..++.|++..-.
T Consensus       392 vi~vGg~se~E----------v~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~  460 (550)
T KOG0356|consen  392 VIKVGGHSEVE----------VNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKK  460 (550)
T ss_pred             EEEecCcchhh----------hhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHH
Confidence            45589999994          4455667899999999998766 899999999999888877654334444555666555


Q ss_pred             C---C-CCCCCCCcccccch
Q psy2833         187 G---P-GLIPGGAEVFFGSV  202 (216)
Q Consensus       187 ~---~-~~~~~~~gi~~~~~  202 (216)
                      .   | ..++.|+|+.-..+
T Consensus       461 Al~~P~~~IakNAGvdg~~v  480 (550)
T KOG0356|consen  461 ALRLPAQTIAKNAGVDGSVV  480 (550)
T ss_pred             HHhhhHHHHHHhcCCchHHH
Confidence            3   2 22466777654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
3iyg_G	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		2e-26
3p9d_C	590	The Crystal Structure Of Yeast Cct Reveals Intrinsi		9e-17
3iyg_H	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		7e-11
1q3r_A	548	Crystal Structure Of The Chaperonin From Thermococc		5e-10
1q2v_A	548	Crystal Structure Of The Chaperonin From Thermococc		5e-10
1q3s_A	548	Crystal Structure Of The Chaperonin From Thermococc		5e-10
3p9d_B	527	The Crystal Structure Of Yeast Cct Reveals Intrinsi		7e-10
3p9d_F	546	The Crystal Structure Of Yeast Cct Reveals Intrinsi		8e-10
3iyg_Z	517	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		7e-09
3ko1_A	553	Cystal Structure Of Thermosome From Acidianus Tengc		1e-08
1a6d_A	545	Thermosome From T. Acidophilum Length = 545		1e-08
3p9d_G	550	The Crystal Structure Of Yeast Cct Reveals Intrinsi		2e-08
1a6d_B	543	Thermosome From T. Acidophilum Length = 543		3e-08
3iyg_B	513	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		4e-08
3iyg_E	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		4e-08
1gml_A	178	Crystal Structure Of The Mouse Cct Gamma Apical Dom		2e-07
3aq1_B	500	Open State Monomer Of A Group Ii Chaperonin From Me		4e-07
3iyg_A	529	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		1e-06
3iyf_A	521	Atomic Model Of The Lidless Mm-Cpn In The Open Stat		4e-06
3izn_A	491	Mm-Cpn Deltalid With Atp Length = 491		4e-06
3los_A	543	Atomic Model Of Mm-Cpn In The Closed State Length =		4e-06
3izh_A	513	Mm-Cpn D386a With Atp Length = 513		5e-06
3izk_A	491	Mm-Cpn Rls Deltalid With Atp Length = 491		5e-06
3rus_A	543	Crystal Structure Of Cpn-Rls In Complex With Adp Fr		6e-06
3izi_A	513	Mm-Cpn Rls With Atp Length = 513		6e-06
3p9d_E	562	The Crystal Structure Of Yeast Cct Reveals Intrinsi		6e-06
3iyg_D	518	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		7e-06
3p9d_A	559	The Crystal Structure Of Yeast Cct Reveals Intrinsi		4e-05
3j02_A	491	Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun		4e-05
3p9d_D	528	The Crystal Structure Of Yeast Cct Reveals Intrinsi		8e-05
3iyg_Q	512	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		9e-05

>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 62/71 (87%)
Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct: 343 IGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 402
Query: 115 EMAVSHVSASK 125
           EMAV+H    K
Sbjct: 403 EMAVAHALTEK 413

>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 28/130 (21%)
Query: 54  LLGDEYFCYITECQNPKACT-----ILLRGASKDLLNETERNLQDALHVARNIMLEPKLV 108
           ++GDEYF ++  C+ P + +        +G+ K      ++N      +A +     K +
Sbjct: 359 MIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGK---RRWKKNF-----IAVSAANRFKKI 410
Query: 109 PGGGAVEMAVSHVSA---------------SKDLLNETERNLQDALHVARNIMLEPKLVP 153
              GA+     H                  SKD+LNE +RNLQDA+ VARN+ML P L P
Sbjct: 411 SSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSP 470
Query: 154 GGGAVEMAVS 163
           GGGA EMAVS
Sbjct: 471 GGGATEMAVS 480

>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 47  CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
           C   +   +G E + + T C   K CTI+LRG ++  + ETER+L DA+ + R  +    
Sbjct: 336 CQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDS 395
Query: 107 LVPGGGAVEMAVS 119
           +V GGGA+EM +S
Sbjct: 396 VVAGGGAIEMELS 408

>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA- 113
           L  E   ++  C+NPKA TIL+RG ++ +++E ER L+DA+ V +++M +  ++P GGA 
Sbjct: 355 LAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAP 414
Query: 114 -VEMAVSHVSASKDLLNETE---RNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSS 167
            +E+A+     +K +  +      N  DAL +    + E     G   VEM V  +S 
Sbjct: 415 EIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAEN---AGLDTVEMLVKVISE 469

>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA- 113
           L  E   ++  C+NPKA TIL+RG ++ +++E ER L+DA+ V +++M +  ++P GGA 
Sbjct: 355 LAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAP 414
Query: 114 -VEMAVSHVSASKDLLNETE---RNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSS 167
            +E+A+     +K +  +      N  DAL +    + E     G   VEM V  +S 
Sbjct: 415 EIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAEN---AGLDTVEMLVKVISE 469

>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA- 113
           L  E   ++  C+NPKA TIL+RG ++ +++E ER L+DA+ V +++M +  ++P GGA 
Sbjct: 355 LAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAP 414
Query: 114 -VEMAVSHVSASKDLLNETE---RNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSS 167
            +E+A+     +K +  +      N  DAL +    + E     G   VEM V  +S 
Sbjct: 415 EIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAEN---AGLDTVEMLVKVISE 469

>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 47  CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
           C   +  +LG++ F   + C+  +ACTI+LRGA+   L+E ER+L DAL V      E +
Sbjct: 340 CDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETR 399
Query: 107 LVPGGGAVEMAVSH 120
            V GGG  EM +S 
Sbjct: 400 TVLGGGCAEMVMSK 413

>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G+E F Y+TE  +PK+CTIL++G++   L +T+  ++D L    N++ +  ++PG GA 
Sbjct: 359 IGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAF 418
Query: 115 EMAVSHVSASKDL 127
            +A+S    S ++
Sbjct: 419 YIALSRYLRSANM 431

>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 44/66 (66%)
Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LG+E F +I +C NP++ T+L++G +K  L + +  ++D L   +N + +  +VPG GAV
Sbjct: 347 LGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAV 406
Query: 115 EMAVSH 120
           E+A++ 
Sbjct: 407 EVAMAE 412

>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 45/66 (68%)
Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G++   ++   +NPK+ +IL+RG  + L++ETER L+DAL    +++ + + + GGGAV
Sbjct: 362 VGEDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAV 421
Query: 115 EMAVSH 120
           E+ ++ 
Sbjct: 422 EIEIAK 427

>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GD+   ++  C+NPKA +IL+RG +  +++E ER L DA+ V      + K + GGGAV
Sbjct: 352 IGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAV 411
Query: 115 E 115
           E
Sbjct: 412 E 412

>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 47  CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
           C+  +   +G E +     C   K CT+LLRG ++ ++ E ER+L DA+ + +  +    
Sbjct: 349 CALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKL 408
Query: 107 LVPGGGAVEMAVSH 120
           +V GGGA EM VS 
Sbjct: 409 IVAGGGATEMEVSK 422

>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 22  RKVQLENI-QAGKYIDSSIVTLNHWLCSSQ-------DACLLGDEYFCYITECQNPKACT 73
           R+V+  ++ +  K   +SIV+    + SS        +   +G++Y  ++T C+NPKA +
Sbjct: 312 RRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVS 371
Query: 74  ILLRGASKDLLNETERNLQDALHV 97
           IL+RG ++ +++E ER++ D+LHV
Sbjct: 372 ILVRGETEHVVDEMERSITDSLHV 395

>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 47  CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
           C   +  ++G++   + +     +ACTI+LRGA++ +L+E ER+L DAL V    + + +
Sbjct: 333 CKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSR 392
Query: 107 LVPGGGAVEMAVSH 120
            V GGG  EM ++H
Sbjct: 393 TVYGGGCSEMLMAH 406

>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 58  EYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMA 117
           +    I +C+N +A TI +RG +K ++ E +R+L DAL V RN++ + ++V GGGA E++
Sbjct: 347 DKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 406
Query: 118 VS-HVSASKD----LLNETERNLQDALHV 141
            +  VS   D    L     R   DAL V
Sbjct: 407 CALAVSQEADKCPTLEQYAMRAFADALEV 435

>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 25/26 (96%)
Query: 55  LGDEYFCYITECQNPKACTILLRGAS 80
           +GDEYF +IT+C++PKACTILLRGAS
Sbjct: 147 IGDEYFTFITDCKDPKACTILLRGAS 172

>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 60  FCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
             Y+T CQN KA T+LL G ++ +++  +  L DALHV   ++ + K+V GGG+ E+ +S
Sbjct: 311 MTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELS 370

>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 57  DEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEM 116
           D+    I   +   + +++LRGA+  + +E ER+L DAL V + ++    +VPGGGAVE 
Sbjct: 352 DDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEA 411
Query: 117 AVS 119
           A+S
Sbjct: 412 ALS 414

>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 20  SGRKVQLENIQA-GKYIDSSIVTLNHWLCSSQDACLLGD-----------EYFCYITECQ 67
           + R+V+  +++   K   ++++T N    S+QD   LGD           +   ++ EC+
Sbjct: 283 AARRVKKSDMEKLAKATGANVIT-NIKDLSAQD---LGDAGLVEERKISGDSMIFVEECK 338
Query: 68  NPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
           +PKA T+L+RG ++ ++ E  R + DA+ V    + + ++V GGG+ E+ +S
Sbjct: 339 HPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELS 390

>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 20  SGRKVQLENIQA-GKYIDSSIVTLNHWLCSSQDACLLGD-----------EYFCYITECQ 67
           + R+V+  +++   K   ++++T N    S+QD   LGD           +   ++ EC+
Sbjct: 277 AARRVKKSDMEKLAKATGANVIT-NIKDLSAQD---LGDAGLVEERKISGDSMIFVEECK 332
Query: 68  NPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
           +PKA T+L+RG ++ ++ E  R + DA+ V    + + ++V GGG+ E+ +S
Sbjct: 333 HPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELS 384

>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 20  SGRKVQLENIQA-GKYIDSSIVTLNHWLCSSQDACLLGD-----------EYFCYITECQ 67
           + R+V+  +++   K   ++++T N    S+QD   LGD           +   ++ EC+
Sbjct: 305 AARRVKKSDMEKLAKATGANVIT-NIKDLSAQD---LGDAGLVEERKISGDSMIFVEECK 360
Query: 68  NPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
           +PKA T+L+RG ++ ++ E  R + DA+ V    + + ++V GGG+ E+ +S
Sbjct: 361 HPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELS 412

>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 20  SGRKVQLENIQA-GKYIDSSIVTLNHWLCSSQDACLLGD-----------EYFCYITECQ 67
           + R+V+  +++   K   ++++T N    S+QD   LGD           +   ++ EC+
Sbjct: 299 AARRVKKSDMEKLAKATGANVIT-NIKDLSAQD---LGDAGLVEERKISGDSMIFVEECK 354
Query: 68  NPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
           +PKA T+L+RG ++ ++ E  R + DA+ V    + + ++V GGG+ E+ +S
Sbjct: 355 HPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELS 406

>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 58  EYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMA 117
           +   ++ EC++PKA T+L+RG ++ ++ E  R + DA+ V    + + ++V GGG+ E+ 
Sbjct: 323 DSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVE 382
Query: 118 VS 119
           +S
Sbjct: 383 LS 384

>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 58  EYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMA 117
           +   ++ EC++PKA T+L+RG ++ ++ E  R + DA+ V    + + ++V GGG+ E+ 
Sbjct: 351 DSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVE 410
Query: 118 VS 119
           +S
Sbjct: 411 LS 412

>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 58  EYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMA 117
           +   ++ EC++PKA T+L+RG ++ ++ E  R + DA+ V    + + ++V GGG+ E+ 
Sbjct: 345 DSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVE 404
Query: 118 VS 119
           +S
Sbjct: 405 LS 406

>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 63  ITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
           I + +  K  T  +RG++K +++E ER L D+L V RN++ + ++V GGGA E+ +S
Sbjct: 395 IEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMS 451

>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 49  SQDACLLGDEYFCYITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKL 107
           +++  L G      IT C +P K  TI++RG++K ++ E ER++ DAL V R ++ +  L
Sbjct: 341 AEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRAL 400
Query: 108 VPGGGA--VEMAVSHVSASKDL 127
           + GGGA  +E+A+     S+ L
Sbjct: 401 IAGGGAPEIELALRLTEYSRTL 422

>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 26  LENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLN 85
           + N++  +  +SS +     LC         D+    I       + +I+LRGA+   L+
Sbjct: 341 MSNLEGEETFESSYL----GLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLD 396
Query: 86  ETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
           E ER+L D+L V +  +    +VPGGG VE A++
Sbjct: 397 EMERSLHDSLSVVKRTLESGNVVPGGGCVEAALN 430

>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 20  SGRKVQLENIQA-GKYIDSSIVTLNHWLCSSQDACLLGD-----------EYFCYITECQ 67
           + R+V+  +++   K   ++++T N    S+QD   LGD           +   ++ EC+
Sbjct: 277 AARRVKKSDMEKLAKATGANVIT-NIKDLSAQD---LGDAGLVEERKISGDSMIFVEECK 332
Query: 68  NPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
           +PKA T+L+RG ++ ++ E  R +  A+ V    + + ++V GGG+ E+ +S
Sbjct: 333 HPKAVTMLIRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELS 384

>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 72  CTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 120
            ++++RGA+  +++ETER+L DAL V R ++ E  L+ GGGA E+ +S 
Sbjct: 375 VSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISR 423

>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 47  CSSQDACLLGD-EYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEP 105
           C S     +GD +   +  E ++    TI+LRG++ +L+++ ER + D ++  + +  + 
Sbjct: 331 CDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDK 390
Query: 106 KLVPGGGAVEMAVS 119
           +LVPGGGA E+ ++
Sbjct: 391 RLVPGGGATEIELA 404

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	8e-32
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	1e-31
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	2e-31
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	4e-05
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	2e-31
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	3e-31
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	2e-05
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	3e-31
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	3e-04
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	3e-31
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	1e-04
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	3e-31
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	6e-07
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	4e-31
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	4e-31
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	7e-06
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	5e-31
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	1e-04
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	6e-31
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	1e-30
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-30
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	2e-30
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	3e-30
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	5e-30
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	3e-29
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	3e-27
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	5e-27
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	1e-04
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	2e-25
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	7e-19
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	3e-05
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	1e-10

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  119 bits (302), Expect = 8e-32
 Identities = 48/66 (72%), Positives = 61/66 (92%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA 
Sbjct: 343 IGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 402

Query: 115 EMAVSH 120
           EMAV+H
Sbjct: 403 EMAVAH 408

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  119 bits (300), Expect = 1e-31
 Identities = 27/65 (41%), Positives = 41/65 (63%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G E + + T C   K CTI+LRG ++  + ETER+L DA+ + R  +    +V GGGA+
Sbjct: 344 IGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAI 403

Query: 115 EMAVS 119
           EM +S
Sbjct: 404 EMELS 408

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score =  119 bits (300), Expect = 2e-31
 Identities = 25/66 (37%), Positives = 41/66 (62%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GD+   ++  C+NPKA +IL+RG +  +++E ER L DA+ V      + K + GGGAV
Sbjct: 352 IGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAV 411

Query: 115 EMAVSH 120
           E  ++ 
Sbjct: 412 EAELAM 417

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 4  PGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
           G  P+LVL   T+R+ G+  Q  NI+A K I  ++ T
Sbjct: 3  TGQVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRT 40

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score =  118 bits (298), Expect = 2e-31
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +      Y+T CQN KA T+LL G ++ +++  +  L DALHV   ++ + K+V GGG+ 
Sbjct: 306 VRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSS 365

Query: 115 EMAVSH 120
           E+ +S 
Sbjct: 366 EVELSL 371

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score =  118 bits (299), Expect = 3e-31
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G E +     C   K CT+LLRG ++ ++ E ER+L DA+ + +  +    +V GGGA 
Sbjct: 357 IGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGAT 416

Query: 115 EMAVS 119
           EM VS
Sbjct: 417 EMEVS 421

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 1  MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
           FG  +  ++VL   T    G+   + NI A   +  ++  
Sbjct: 2  NFGSQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKP 42

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score =  118 bits (298), Expect = 3e-31
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
             D+    I       + +I+LRGA+   L+E ER+L D+L V +  +    +VPGGG V
Sbjct: 366 FSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCV 425

Query: 115 EMAVS 119
           E A++
Sbjct: 426 EAALN 430

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 5/37 (13%), Positives = 17/37 (45%)

Query: 5  GSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
           ++    L    ++ SG  ++ +N+ A   + + + +
Sbjct: 6  NNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKS 42

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score =  118 bits (298), Expect = 3e-31
 Identities = 23/66 (34%), Positives = 44/66 (66%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G++Y  ++T C+NPKA +IL+RG ++ +++E ER++ D+LHV  + + +     GGGA 
Sbjct: 353 VGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGAT 412

Query: 115 EMAVSH 120
              ++ 
Sbjct: 413 AAEIAF 418

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 5  GSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
             P+ +L   TKR+SG+    ENI+A   I +S+ +
Sbjct: 3  AGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRS 39

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score =  118 bits (298), Expect = 3e-31
 Identities = 25/66 (37%), Positives = 45/66 (68%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           L  E   ++  C+NPKA TIL+RG ++ +++E ER L+DA+ V +++M +  ++P GGA 
Sbjct: 355 LAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAP 414

Query: 115 EMAVSH 120
           E+ ++ 
Sbjct: 415 EIELAI 420

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 1  MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
          M      PV++L   T+R  GR  Q  NI A + I  ++ T
Sbjct: 1  MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRT 41

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score =  118 bits (297), Expect = 4e-31
 Identities = 24/65 (36%), Positives = 40/65 (61%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           + D+    I   +   + +++LRGA+  + +E ER+L DAL V + ++    +VPGGGAV
Sbjct: 350 ICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAV 409

Query: 115 EMAVS 119
           E A+S
Sbjct: 410 EAALS 414

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score =  118 bits (297), Expect = 4e-31
 Identities = 23/66 (34%), Positives = 45/66 (68%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G++   ++   +NPK+ +IL+RG  + L++ETER L+DAL    +++ + + + GGGAV
Sbjct: 362 VGEDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAV 421

Query: 115 EMAVSH 120
           E+ ++ 
Sbjct: 422 EIEIAK 427

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 1  MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
             P   PV++L   + R  G++    NI A K ++ ++ +
Sbjct: 8  ATTPEGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKS 48

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score =  117 bits (296), Expect = 5e-31
 Identities = 20/66 (30%), Positives = 41/66 (62%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +  +   ++ EC++PKA T+L+RG ++ ++ E  R + DA+ V    + + ++V GGG+ 
Sbjct: 348 ISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGST 407

Query: 115 EMAVSH 120
           E+ +S 
Sbjct: 408 EVELSM 413

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 6  SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
          S    VL  N KR  GR  Q  NI AG+ I  ++ +
Sbjct: 2  SQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRS 37

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score =  117 bits (295), Expect = 6e-31
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LG++ F   + C+  +ACTI+LRGA+   L+E ER+L DAL V      E + V GGG  
Sbjct: 348 LGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCA 407

Query: 115 EMAVS 119
           EM +S
Sbjct: 408 EMVMS 412

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score =  116 bits (293), Expect = 1e-30
 Identities = 24/66 (36%), Positives = 44/66 (66%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           LG+E F +I +C NP++ T+L++G +K  L + +  ++D L   +N + +  +VPG GAV
Sbjct: 347 LGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAV 406

Query: 115 EMAVSH 120
           E+A++ 
Sbjct: 407 EVAMAE 412

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score =  116 bits (293), Expect = 1e-30
 Identities = 24/66 (36%), Positives = 44/66 (66%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +G+E F Y+TE  +PK+CTIL++G++   L +T+  ++D L    N++ +  ++PG GA 
Sbjct: 359 IGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAF 418

Query: 115 EMAVSH 120
            +A+S 
Sbjct: 419 YIALSR 424

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score =  116 bits (292), Expect = 2e-30
 Identities = 24/65 (36%), Positives = 42/65 (64%)

Query: 56  GDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVE 115
             +    I +C+N +A TI +RG +K ++ E +R+L DAL V RN++ + ++V GGGA E
Sbjct: 345 TKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 404

Query: 116 MAVSH 120
           ++ + 
Sbjct: 405 ISCAL 409

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score =  115 bits (291), Expect = 3e-30
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 56  GDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVE 115
           G++   + +     +ACTI+LRGA++ +L+E ER+L DAL V    + + + V GGG  E
Sbjct: 342 GEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSE 401

Query: 116 MAVS 119
           M ++
Sbjct: 402 MLMA 405

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score =  115 bits (290), Expect = 5e-30
 Identities = 22/64 (34%), Positives = 39/64 (60%)

Query: 56  GDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVE 115
             +    I + +  K  T  +RG++K +++E ER L D+L V RN++ + ++V GGGA E
Sbjct: 388 TKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAE 447

Query: 116 MAVS 119
           + +S
Sbjct: 448 VTMS 451

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score =  112 bits (283), Expect = 3e-29
 Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 56  GDEYFCYITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           G      IT C +P K  TI++RG++K ++ E ER++ DAL V R ++ +  L+ GGGA 
Sbjct: 348 GSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAP 407

Query: 115 EMAVSH 120
           E+ ++ 
Sbjct: 408 EIELAL 413

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score =  106 bits (268), Expect = 3e-27
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 55  LGDEYFCYITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
           +GD         +      TI+LRG++ +L+++ ER + D ++  + +  + +LVPGGGA
Sbjct: 339 VGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGA 398

Query: 114 VEMAVSH 120
            E+ ++ 
Sbjct: 399 TEIELAK 405

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score =  106 bits (267), Expect = 5e-27
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 55  LGDEYFCYITECQNPKA---CTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGG 111
                   +T  +N  A    ++++RGA+  +++ETER+L DAL V R ++ E  L+ GG
Sbjct: 355 SDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGG 414

Query: 112 GAVEMAVS 119
           GA E+ +S
Sbjct: 415 GAPEIEIS 422

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 6  SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
          SA V   ++   ++  ++V+  NI A + +  +I T
Sbjct: 2  SAKVPSNATFKNKEKPQEVRKANIIAARSVADAIRT 37

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score =  102 bits (256), Expect = 2e-25
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 55  LGDEYFCYIT--ECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEP--KLVPG 110
           +G +        + +  +  TI+LRGA+++ L++ ER + D +   + +M     KL+PG
Sbjct: 363 IGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPG 422

Query: 111 GGAVEMAVSH 120
            GA E+ +  
Sbjct: 423 AGATEIELIS 432

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 83.2 bits (206), Expect = 7e-19
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
           +GDEYF ++  C+ P + +       +    +           A N   +       G+ 
Sbjct: 360 IGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSG 419

Query: 115 EMAVSHVS------------ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAV 162
                H               SKD+LNE +RNLQDA+ VARN+ML P L PGGGA EMAV
Sbjct: 420 HHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAV 479

Query: 163 SHVSSCFQDNLLGR 176
           S   +     L G 
Sbjct: 480 SVKLAEKAKQLEGI 493

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 6  SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
           APV+ ++++ +R +GR+ Q+ NI A K +   I T
Sbjct: 2  QAPVVFMNASQERTTGRQAQISNITAAKAVADVIRT 37

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 55  LGDEYFCYITECQNPKACTILLRGASKDLLNE 86
           +GDEYF +IT+C++PKACTILLRGAS    + 
Sbjct: 147 IGDEYFTFITDCKDPKACTILLRGASHHHHHH 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	100.0
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	100.0
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	100.0
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	100.0
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	100.0
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	100.0
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	100.0
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	100.0
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	100.0
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	100.0
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	100.0
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	100.0
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	100.0
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	100.0
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	100.0
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	100.0
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	100.0
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	100.0
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	100.0
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	100.0
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	100.0
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	100.0
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	99.96
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	99.96
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	99.96
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	99.96
1gml_A	178	T-complex protein 1 subunit gamma; chaperone, chap	99.44
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	99.03
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	98.96
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	98.95
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	98.93
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	98.92
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	98.9
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	98.9
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	98.89
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	98.86
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	98.85
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	98.85
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	98.84
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	98.83
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	98.83
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	98.82
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	98.82
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	98.81
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	98.78
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	98.78
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	98.75
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	98.75
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	98.74
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	98.64
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	98.57
1ass_A	159	Thermosome; chaperonin, HSP60, TCP1, groel, thermo	98.56
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	98.55
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	98.53

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1e-36  Score=287.34  Aligned_cols=196  Identities=32%  Similarity=0.447  Sum_probs=170.8

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ce-eceEEEEEECCeEEEEEeecCCCceEEEEEeCCChh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WL-CSSQDACLLGDEYFCYITECQNPKACTILLRGASKD   82 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~-c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~   82 (216)
                      ..++++++..+++    +++...+|||+++++++++++   |+ |+.|+++++|+++|+||++|+++++|||+|||+|++
T Consensus       295 ~~I~av~~~~k~~----leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~~~~TIllrG~t~~  370 (515)
T 3iyg_G          295 ANITAIRRVRKTD----NNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKE  370 (515)
T ss_pred             CCceeeccCCHHH----HHHHHHHhCCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCCCeEEEEEcCCCHH
Confidence            4566664444443    444555799999999999986   99 999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||+++++++++++++|||||++|+++|.+|++++     .++.++++|++||++||++|++|+   |.++
T Consensus       371 ~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~Na---G~d~  447 (515)
T 3iyg_G          371 ILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNC---GAST  447 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhc---CCCH
Confidence            99999999999999999999999999999999999999999986     899999999999999999999999   8899


Q ss_pred             hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      .++..  .|+..+.+ .+...+|+|+.+|++.|| .++||||+..++.+++++|.-
T Consensus       448 ~~~v~--~l~~~h~~-~~~~~~G~d~~~g~~~d~-~~~gi~dp~~vk~~al~~A~e  499 (515)
T 3iyg_G          448 IRLLT--SLRAKHTQ-ENCETWGVNGETGTLVDM-KELGIWEPLAVKLQTYKTAVE  499 (515)
T ss_pred             HHHHH--HHHHHHHh-cCCCceeeeCCCCccccc-HHcCCEEcHHHHHHHHHHHHH
Confidence            98765  34332221 234478999999999988 578999999999999998764

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.6e-36  Score=286.85  Aligned_cols=196  Identities=21%  Similarity=0.256  Sum_probs=169.4

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccC------c---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeC
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLN------H---WLCSSQDACLLGDEYFCYITECQNPKACTILLRG   78 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~------~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG   78 (216)
                      .++++++..+++    +++...+|||++++++++++      +   |+|+.|+++++|+++|+||++|+++++|||+|||
T Consensus       298 gI~av~~v~k~~----leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG  373 (529)
T 3iyg_A          298 GAMAVRRVLKRD----LKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRG  373 (529)
T ss_pred             CCceeccCCHHH----HHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCCceEEEEECC
Confidence            366666544433    44455579999999998865      2   9999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccC
Q psy2833          79 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVP  153 (216)
Q Consensus        79 ~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~  153 (216)
                      +|+++++|+||+++||+++++++++|+++|||||++|+++|.+|++++     +++.++++|++||++||++|++|+   
T Consensus       374 ~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~Na---  450 (529)
T 3iyg_A          374 ANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNA---  450 (529)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHc---
Confidence            999999999999999999999999999999999999999999999997     899999999999999999999999   


Q ss_pred             CCChhHHHHHHHHHHhh-hhc-----CCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         154 GGGAVEMAVSHVSSCFQ-DNL-----LGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       154 Ggga~E~~~s~~L~~~a-~~~-----~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      |.++.|+..  .|+..+ ...     ++..++|+|+.+|++.|| .+.||||+..++.+++++|.-
T Consensus       451 G~d~~~~v~--~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~d~-~~~gV~dp~~vk~~al~~A~e  513 (529)
T 3iyg_A          451 AQDSTDLVA--KLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDN-KQAGVFEPTIVKVKSLKFATE  513 (529)
T ss_pred             CCCHHHHHH--HHHHHHhccccccccccCceeeeeCCCCCccCh-hhccCEecHHHHHHHHHHHHH
Confidence            889998875  344332 211     122679999999999987 568999999999999998863

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=3.9e-36  Score=283.52  Aligned_cols=182  Identities=22%  Similarity=0.309  Sum_probs=164.1

Q ss_pred             chhhhhhhcCceeeeeecccCc----ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHH
Q psy2833          23 KVQLENIQAGKYIDSSIVTLNH----WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVA   98 (216)
Q Consensus        23 ~~~~~~i~~G~~i~~sl~~~~~----g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~   98 (216)
                      .+++...+|||+++++++++++    |+|+ |+++++|+++|+||++|+++++|||+|||+|+++++|+||+++||++++
T Consensus       312 ~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~  390 (517)
T 3iyg_Z          312 NMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAV  390 (517)
T ss_pred             HHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCchhheeeecCCcHHHHHHHHHHHHHHHHHH
Confidence            3555556799999999999874    8999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhc
Q psy2833          99 RNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNL  173 (216)
Q Consensus        99 ~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~  173 (216)
                      +++++++++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |.++.++..  .|+..  |.
T Consensus       391 r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~Na---G~d~~~~v~--~l~~~--h~  463 (517)
T 3iyg_Z          391 KNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNS---GFDLQETLV--KVQAE--HS  463 (517)
T ss_pred             HHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHHH--Hh
Confidence            9999999999999999999999999987     899999999999999999999999   789998765  23332  23


Q ss_pred             CCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         174 LGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       174 ~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ++..++|+|+.+|++.|| .+.||||+..++.+++++|.-
T Consensus       464 ~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~e  502 (517)
T 3iyg_Z          464 ESGQLVGVDLNTGEPMVA-AEAGIWDNYCVKKQLLHSCTV  502 (517)
T ss_pred             cCCCcEEEeCCCCcccch-hhccCeecHHHHHHHHHHHHH
Confidence            456689999999999988 569999999999999988753

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=1.2e-35  Score=280.06  Aligned_cols=182  Identities=21%  Similarity=0.320  Sum_probs=164.6

Q ss_pred             hhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHHH
Q psy2833          24 VQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARN  100 (216)
Q Consensus        24 ~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~  100 (216)
                      +++...+|||+++++++++++   |+|+.|+++++|+++|+||++|+++++|||+|||+|+++++|+||+++||++++++
T Consensus       310 leria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~  389 (515)
T 3iyg_H          310 LKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRR  389 (515)
T ss_pred             HHHHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence            444555799999999999986   99999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCC
Q psy2833         101 IMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLG  175 (216)
Q Consensus       101 ~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g  175 (216)
                      +++|+++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |.++.++..  .|+..  |.++
T Consensus       390 ~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~~~~v~--~l~~~--h~~~  462 (515)
T 3iyg_H          390 AIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNA---GFDATNILN--KLRAR--HAQG  462 (515)
T ss_pred             HhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHHH--hhcc
Confidence            99999999999999999999999986     899999999999999999999999   789888765  23332  2345


Q ss_pred             ceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         176 RVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       176 ~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ..++|+|+.+|++.|| .++||||+..++.+++++|.-
T Consensus       463 ~~~~G~d~~~g~~~dm-~~~gI~dp~~vk~~al~~A~~  499 (515)
T 3iyg_H          463 GMWYGVDINTEDIADN-FEAFVWEPAMVRINALTAASE  499 (515)
T ss_pred             CCCeeEeCCCCccccc-HhccCEECHHHHHHHHHHHHH
Confidence            5679999999999988 578999999999999998764

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=100.00  E-value=1.7e-35  Score=278.89  Aligned_cols=195  Identities=22%  Similarity=0.285  Sum_probs=172.0

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL   83 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~   83 (216)
                      ..+++++.-.++    .++....+||++++++++++++   |+|+.|+++.+|+++|++|++|+++++|||+|||+|+++
T Consensus       294 ~~I~av~~~~~~----~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~t~~~  369 (513)
T 3iyg_B          294 AGVMAIEHADFV----GVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQI  369 (513)
T ss_pred             cCceEEecCCHH----HHHHHHHHhCCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCCceEEEEecCCCHHH
Confidence            345666655543    3455556799999999999986   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833          84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV  158 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~  158 (216)
                      ++|+||+++||+++++++++|+++|||||++|++++.+|++++     .++.++++|++||+++|++|++|+   |.++.
T Consensus       370 l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~Na---G~d~~  446 (513)
T 3iyg_B          370 LDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNA---GYDSA  446 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhc---CCCHH
Confidence            9999999999999999999999999999999999999999986     899999999999999999999999   88998


Q ss_pred             HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ++..  .|+..  |..+..++|+|+.+|++.|| .+.||||+..++.+++++|.-
T Consensus       447 ~~v~--~l~~~--h~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~~  496 (513)
T 3iyg_B          447 DLVA--QLRAA--HSEGKTTAGLDMKEGTIGDM-SVLGITESFQVKRQVLLSAAE  496 (513)
T ss_pred             HHHH--HHHHH--HhcCCCceeecCCCCCccch-HhccCEecHHHHHHHHHHHHH
Confidence            8765  23332  23456689999999999988 468999999999999998754

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=2.6e-35  Score=277.95  Aligned_cols=194  Identities=20%  Similarity=0.250  Sum_probs=170.3

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECC-eEEEEEeecCC-CceEEEEEeCCChh
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD-EYFCYITECQN-PKACTILLRGASKD   82 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~-~~~~~~~~~~~-~~~~TIllrG~t~~   82 (216)
                      .+++++.-.++    .+++...+|||+++++++++++   |+|+.|++.++|+ ++|+||++|++ +++|||+|||+|++
T Consensus       300 ~I~av~~~~~~----~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~  375 (518)
T 3iyg_D          300 KIMVVKDIERE----DIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKL  375 (518)
T ss_pred             CcEEEecCCHH----HHHHHHHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHH
Confidence            45555555443    3555566799999999999986   9999999999999 89999999998 89999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||++++++++++|++|||||++|++++.+|++++     .++.++++|++||+++|++|++|+   |.++
T Consensus       376 ~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~Na---G~d~  452 (518)
T 3iyg_D          376 VIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENA---GLNP  452 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCH
Confidence            99999999999999999999999999999999999999999986     899999999999999999999999   8899


Q ss_pred             hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      .++..  .|+..  |..+..++|+|+.+|++.|| .+.||||+..++.+++++|.-
T Consensus       453 ~~~v~--~l~~~--h~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~e  503 (518)
T 3iyg_D          453 ISTVT--ELRNR--HAQGEKTTGINVRKGGISNI-LEELVVQPLLVSVSALTLATE  503 (518)
T ss_pred             HHHHH--HHHHH--HhccCCceeEeCCCCcccch-hhccCEEcHHHHHHHHHHHHH
Confidence            98765  23332  22455579999999999987 578999999999999988764

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=6.1e-35  Score=275.00  Aligned_cols=195  Identities=19%  Similarity=0.212  Sum_probs=171.4

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecC-CCceEEEEEeCCChh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQ-NPKACTILLRGASKD   82 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~-~~~~~TIllrG~t~~   82 (216)
                      ..++++++-.+++    +++...+||++++++++++++   |+|+.|++.++|+++|++|++|+ .+++|||+|||+|++
T Consensus       292 ~~I~av~~~~~~d----le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~  367 (512)
T 3iyg_Q          292 YNIMLVRLNSKWD----LRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDN  367 (512)
T ss_pred             CCeEEEEeCCHHH----HHHHHHHhCCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHH
Confidence            4577777655544    555566799999999999886   99999999999999999999997 488999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833          83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA  157 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga  157 (216)
                      +++|+||+++||++++++++++|++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |.++
T Consensus       368 ~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~  444 (512)
T 3iyg_Q          368 LMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENS---GVKA  444 (512)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhc---CCCH
Confidence            99999999999999999999999999999999999999999986     899999999999999999999999   7899


Q ss_pred             hHHHHHHHHHHhhhhcCCceEEEEeeccC--CCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAG--GPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~--~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      .++..  +|+..  |..+..++|+|+.+|  ++.|| .++||||+..++.+++++|.-
T Consensus       445 ~~~v~--~l~~~--h~~~~~~~G~d~~~~~g~~~d~-~~~gI~dp~~vk~~al~~A~~  497 (512)
T 3iyg_Q          445 NEVIS--KLYAV--HQEGNKNVGLDIEAEVPAVKDM-LEAGVLDTYLGKYWAIKLATN  497 (512)
T ss_pred             HHHHH--HHHHH--HhcCCCcEEEecCCCCCcccch-HhccCeEcHHHHHHHHHHHHH
Confidence            98765  23332  224566899999965  89887 568999999999999988754

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=100.00  E-value=1.3e-35  Score=278.87  Aligned_cols=195  Identities=19%  Similarity=0.229  Sum_probs=171.8

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL   84 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l   84 (216)
                      .++++++..+++    +++...+||++++++++++++   |+|+.|+++++|+++|+||++|+++++|||+|||+|++++
T Consensus       260 ~I~av~~~~k~~----le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l  335 (500)
T 3aq1_B          260 GIYAVRRVKKSD----LKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVV  335 (500)
T ss_dssp             TCEEECSCCHHH----HHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEEETTCCCEEEEEEESSHHHH
T ss_pred             CEEEEEeCCHHH----HHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEECCCCCceEEEEecCCcHHHH
Confidence            356665444333    444556799999999999986   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833          85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE  159 (216)
Q Consensus        85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E  159 (216)
                      +|+||+++||+++++++++++++|||||++|++++.+|++++     ..+.++++|++||+++|++|++|+   |.++.+
T Consensus       336 ~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~Na---G~d~~~  412 (500)
T 3aq1_B          336 DSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENA---GLDPID  412 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHT---TCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHc---CCCHHH
Confidence            999999999999999999999999999999999999999986     899999999999999999999999   889998


Q ss_pred             HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      +..  .|+..+  .++..++|+|+.+|++.|+ .+.||||++.++.+++++|.-+
T Consensus       413 ~v~--~l~~~h--~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~e~  462 (500)
T 3aq1_B          413 IMV--ELRSQH--EKGNKNAGLNVYTGEVVDM-WENDVIEPLRIKTQAINAAMEA  462 (500)
T ss_dssp             HHH--HHHHHH--HTTCTTEEECTTTCCEEET-TTTTCEEEHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHh--cCCCCCeeEeCCCCCccch-HhcCCCCCHHHHHHHHHHHHHH
Confidence            875  344322  2355679999999999987 5899999999999999988643

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=100.00  E-value=5.1e-35  Score=275.70  Aligned_cols=183  Identities=22%  Similarity=0.286  Sum_probs=163.9

Q ss_pred             hhhhhhhcCceeeeeecccCc---ceeceEEEEEECC--eEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHH
Q psy2833          24 VQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD--EYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVA   98 (216)
Q Consensus        24 ~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~   98 (216)
                      ++....+|||+++++++++++   |+|+.|+++++|+  ++|+||++|+++++|||+|||+|+++++|+||+++||++++
T Consensus       308 le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~  387 (515)
T 3iyg_E          308 IELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVI  387 (515)
T ss_pred             HHHHHHHhCCEEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence            444555799999999999986   9999999999998  89999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhc
Q psy2833          99 RNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNL  173 (216)
Q Consensus        99 ~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~  173 (216)
                      ++++++|++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |.++.++..  .|+..+. .
T Consensus       388 r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~Na---G~d~~~~v~--~l~~~h~-~  461 (515)
T 3iyg_E          388 RNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENS---GMNPIQTMT--EVRARQV-K  461 (515)
T ss_pred             HHHHhcCCcCCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHH--HHHHHHh-c
Confidence            9999999999999999999999999986     889999999999999999999999   889988765  3333221 1


Q ss_pred             CCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         174 LGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       174 ~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      .+..++|+|+.+|++.|| .++||||+..++.+++++|.-
T Consensus       462 ~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~~  500 (515)
T 3iyg_E          462 EVNPALGIDCLHKGTNDM-KHQHVIETLIGKKQQISLATQ  500 (515)
T ss_pred             cCCCeeeEecCCCcccch-HhccCEEcHHHHHHHHHHHHH
Confidence            345689999999999987 578999999999999988764

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=100.00  E-value=3.5e-35  Score=278.48  Aligned_cols=195  Identities=19%  Similarity=0.267  Sum_probs=169.8

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL   84 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l   84 (216)
                      .++++++..    ...+++...+||++++++++++++   |+|+.|+++++|+++|+||++|+++++|||+|||+|++++
T Consensus       302 gI~~v~~v~----k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~TI~lrG~te~~l  377 (543)
T 3ruv_A          302 GIVAARRVK----KSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVI  377 (543)
T ss_dssp             TCEEECSCC----HHHHHHHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHH
T ss_pred             CcEEEeeCC----HHHHHHHHHHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCCCceeEEEecCCCHHHH
Confidence            356665432    223444455799999999999986   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833          85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE  159 (216)
Q Consensus        85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E  159 (216)
                      +|+||+++||+++++++++++++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |.++.+
T Consensus       378 ~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~~~  454 (543)
T 3ruv_A          378 EEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENA---GLDAIE  454 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHT---TCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHH
Confidence            999999999999999999999999999999999999999986     889999999999999999999999   889998


Q ss_pred             HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      +..  .|+..+.+ .+..++|+|+.+|++.|+ .++||||+..++.+++++|.-
T Consensus       455 ~v~--~l~~~h~~-~~~~~~G~d~~~g~~~dm-~~~gI~dp~~vk~~al~~A~~  504 (543)
T 3ruv_A          455 ILV--KVRAAHAS-NGNKCAGLNVFTGAVEDM-CENGVVEPLRVKTQAIQSAAE  504 (543)
T ss_dssp             HHH--HHHHHHTT-TCCTTEEECTTTCSEEET-TTTTCEEEHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHhh-cCCceeeeeCCCCccccH-HHcCCEecHHHHHHHHHHHHH
Confidence            765  33332211 455689999999999987 568999999999999988754

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=100.00  E-value=3.7e-35  Score=278.26  Aligned_cols=195  Identities=20%  Similarity=0.298  Sum_probs=171.6

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL   84 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l   84 (216)
                      .++++++..+++    +++...+|||+++++++++++   |+|+.|+++++|+++|+||++|+++++|||+|||+|++++
T Consensus       307 ~I~av~~v~k~~----le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l  382 (543)
T 1a6d_B          307 GIYAVRRVKKSD----MDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETEHVV  382 (543)
T ss_dssp             TCEEECSCCHHH----HHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSSSCEEEEEEESSHHHH
T ss_pred             CeeEeccCCHHH----HHHHHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEecCCCHHHH
Confidence            366775444333    444555799999999999986   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833          85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE  159 (216)
Q Consensus        85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E  159 (216)
                      +|+||+++||+++++++++++++|||||++|++++.+|++++     ..+.++++|++||+++|++|++|+   |.++.+
T Consensus       383 ~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~Na---G~d~~~  459 (543)
T 1a6d_B          383 DEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENA---GLDPID  459 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHH---TCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHc---CCChHH
Confidence            999999999999999999999999999999999999999986     889999999999999999999999   789888


Q ss_pred             HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      +..  .|+..+  .++..++|+|+.+|++.|+ .+.||||+..++.+++++|.-+
T Consensus       460 ~v~--~l~~~h--~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~e~  509 (543)
T 1a6d_B          460 ILL--KLRAEH--AKGNKTYGINVFTGEIEDM-VKNGVIEPIRVGKQAIESATEA  509 (543)
T ss_dssp             HHH--HHHHHH--HTTCTTEEEETTTTEEEET-TTTTCEEEHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHH--hCCCCCeeEeCCCCcccch-hhcCceecHHHHHHHHHHHHHH
Confidence            775  344332  2455679999999999987 5789999999999999988643

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=100.00  E-value=2e-35  Score=280.68  Aligned_cols=193  Identities=20%  Similarity=0.285  Sum_probs=169.0

Q ss_pred             EEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHH
Q psy2833           9 VLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLN   85 (216)
Q Consensus         9 ~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~   85 (216)
                      +|++++..    ...+++...+||++++++++++++   |+|+.|+++++|+++|+||++|+++++|||+|||+|+++++
T Consensus       317 I~~v~~v~----k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~~~~TI~lrG~te~~l~  392 (553)
T 3ko1_A          317 VLAVRRAK----KSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSISILIRGGLERLVD  392 (553)
T ss_dssp             CEEECCCC----HHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSSSCEEEEECCSSTTHHH
T ss_pred             hhhhhhhh----hhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCCCceEEEeeeccHHHHHH
Confidence            55665432    233444555799999999999986   99999999999999999999999999999999999999999


Q ss_pred             HHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHH
Q psy2833          86 ETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEM  160 (216)
Q Consensus        86 E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~  160 (216)
                      |+||+++||+++++++++++++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |.++.++
T Consensus       393 E~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~~~~  469 (553)
T 3ko1_A          393 ETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENA---GFDPIDL  469 (553)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH---TSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhc---CCCHHHH
Confidence            99999999999999999999999999999999999999986     899999999999999999999999   8899987


Q ss_pred             HHHHHHHHhhhhcCCc-eEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         161 AVSHVSSCFQDNLLGR-VVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       161 ~~s~~L~~~a~~~~g~-~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ..  .|+.  .|..+. .++|+|+.+|++.|| .++||||+..++.+++++|.-
T Consensus       470 v~--~l~~--~h~~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~e  518 (553)
T 3ko1_A          470 LM--KLRS--THENENNKWYGIDLYAGQPVDM-WQKGVIEPALVKMNAIKAATE  518 (553)
T ss_dssp             HH--HHHH--TTCSGGGTTEEEETTTTEEEES-GGGSCEEETTHHHHHHHHHHH
T ss_pred             HH--HHHH--HhhCcCCceEeEEeecCCchHH-HHhCccchhhhhhhhhhhcch
Confidence            65  2333  233444 579999999999987 578999999999999988764

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=100.00  E-value=5.2e-35  Score=277.55  Aligned_cols=195  Identities=22%  Similarity=0.308  Sum_probs=171.0

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL   84 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l   84 (216)
                      .++++++..+++    +++...+||++++++++++++   |+|+.|+++++|+++|+||++|+++++|||+|||+|++++
T Consensus       309 ~I~av~~~~k~~----le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l  384 (548)
T 1q3q_A          309 GIMAVRRVKKSD----MEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVI  384 (548)
T ss_dssp             TCEEECSCCHHH----HHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHH
T ss_pred             CcEEEccCCHHH----HHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCCeEEEEECCCChHHH
Confidence            366775444333    444556799999999999986   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833          85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE  159 (216)
Q Consensus        85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E  159 (216)
                      +|+||+++||+++++++++++++|||||++|++++.+|++++     .++.++++|++||+++|++|++|+   |.++.+
T Consensus       385 ~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~Na---G~d~~~  461 (548)
T 1q3q_A          385 DEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENA---GLDTVE  461 (548)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHT---TCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHc---CCCHHH
Confidence            999999999999999999999999999999999999999986     799999999999999999999999   889998


Q ss_pred             HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      +..  .|+..+.  ++..++|+|+.+|++.|+ .+.||||++.++.+++++|.-+
T Consensus       462 ~v~--~l~~~h~--~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~e~  511 (548)
T 1q3q_A          462 MLV--KVISEHK--NRGLGIGIDVFEGKPADM-LEKGIIEPLRVKKQAIKSASEA  511 (548)
T ss_dssp             HHH--HHHHHHH--HHCTTEEEETTTTEEEET-TTTTCEEEHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHhh--cCCCCcceeCCCCCccch-hhcCCEecHHHHHHHHHHHHHH
Confidence            765  3443221  234469999999999987 5899999999999999988643

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=100.00  E-value=7.9e-35  Score=276.87  Aligned_cols=193  Identities=21%  Similarity=0.239  Sum_probs=167.0

Q ss_pred             EEEEecCcccccccchhhhhhhcCceeeeee------cccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCC
Q psy2833           9 VLVLSSNTKRDSGRKVQLENIQAGKYIDSSI------VTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGA   79 (216)
Q Consensus         9 ~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl------~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~   79 (216)
                      ++++++..+++    +++...+|||++++++      +++++   |+|+.|+++++|+++|+||++|+++++|||+|||+
T Consensus       315 I~av~~~~k~~----le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~  390 (559)
T 3p9d_A          315 IMGVRRCKKED----LRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGA  390 (559)
T ss_dssp             CEEESSCCHHH----HHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSSCCCCEEEEES
T ss_pred             CceEccCCHHH----HHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCCCEEEEEEcCC
Confidence            45555433333    4445567999999999      67665   99999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCC
Q psy2833          80 SKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPG  154 (216)
Q Consensus        80 t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~G  154 (216)
                      |+++++|+||+++||++++++++++|++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |
T Consensus       391 te~~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G  467 (559)
T 3p9d_A          391 NDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNA---A  467 (559)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTS---S
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHC---C
Confidence            99999999999999999999999999999999999999999999986     899999999999999999999999   7


Q ss_pred             CChhHHHHHHHHHHhhhhcCCce------------EEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         155 GGAVEMAVSHVSSCFQDNLLGRV------------VVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       155 gga~E~~~s~~L~~~a~~~~g~~------------~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      .++.++..  .|+..+  ..+..            ++|+|+.+|++.|| .++||||+..++.+++++|.-
T Consensus       468 ~d~~~vv~--~l~~~h--~~~~~~~~~~~~~~~~~~~G~d~~~g~~~dm-~~~gI~dp~~vk~~al~~A~e  533 (559)
T 3p9d_A          468 KDSSELVA--KLRSYH--AASQMAKPEDVKRRSYRNYGLDLIRGKIVDE-IHAGVLEPTISKVKSLKSALE  533 (559)
T ss_dssp             SCCHHHHH--HHHHHH--HTTSCCC----CCCCCCCEEECTTSSSEEES-TTSSCCEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHH--HHHHHH--hccccccccccccccccceeEECCCCcEeeh-hhccCEecHHHHHHHHHHHHH
Confidence            78888765  233322  12222            69999999999988 578999999999999988764

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=100.00  E-value=8.8e-35  Score=276.71  Aligned_cols=185  Identities=20%  Similarity=0.213  Sum_probs=164.6

Q ss_pred             cchhhhhhhcCceeeeeecccCc---ceeceEEEEEECC--eEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhH
Q psy2833          22 RKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD--EYFCYITECQNPKACTILLRGASKDLLNETERNLQDALH   96 (216)
Q Consensus        22 ~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~   96 (216)
                      +.+++...+|||+++++++++++   |+|+.|+++++|+  ++|+||++|+++++|||+|||+|+++++|+||+++||++
T Consensus       349 ~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~te~~l~E~kr~i~DAL~  428 (562)
T 3p9d_E          349 QELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLC  428 (562)
T ss_dssp             TTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCCSCCEEEEECTTTTTHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            33555556799999999999986   9999999999995  899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh
Q psy2833          97 VARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD  171 (216)
Q Consensus        97 v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~  171 (216)
                      +++++++++++|||||++|++++.+|++++     .++.++++|++||+++|++|++|+   |.++.++..  .|+..+.
T Consensus       429 ~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~~~vv~--~l~~~h~  503 (562)
T 3p9d_E          429 VVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENS---GLDPIGTLS--TLKSKQL  503 (562)
T ss_dssp             HHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTT---TSCHHHHHH--HHHHHHH
T ss_pred             HHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHHHHh
Confidence            999999999999999999999999999986     889999999999999999999999   889998765  2333221


Q ss_pred             hcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         172 NLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       172 ~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      + .+..++|+|+.+|++.|+ .++||||+..++.+++++|.-
T Consensus       504 ~-~~~~~~G~d~~~g~~~dm-~~~gI~dp~~vk~~al~~A~e  543 (562)
T 3p9d_E          504 K-EKISNIGVDCLGYGSNDM-KELFVVDPFIGKKQQILLATQ  543 (562)
T ss_dssp             H-TTTSSBCCBTTTTBCCBT-TTTTCEEEHHHHHHHHHHHHH
T ss_pred             h-cCCCceeEecCCCcccch-HhccCEEcHHHHHHHHHHHHH
Confidence            1 344579999999999988 578999999999999988764

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=100.00  E-value=6.1e-35  Score=276.89  Aligned_cols=195  Identities=23%  Similarity=0.298  Sum_probs=171.2

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL   84 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l   84 (216)
                      .++++++..+++    +++...+||++++++++++++   |+|+.|+++++|+++|+||++|+++++|||+|||+|++++
T Consensus       306 ~I~av~~~~k~~----le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l  381 (545)
T 1a6d_A          306 GIYAVRRVKKSD----MEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVV  381 (545)
T ss_dssp             TCEEECSCCHHH----HHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCSSCEEEEECCSSSTTH
T ss_pred             CeeEeccCCHHH----HHHHHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEEcCCCHHHH
Confidence            356665443333    444556799999999999986   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833          85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE  159 (216)
Q Consensus        85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E  159 (216)
                      +|+||+++||+++++++++++++|||||++|++++.+|++++     ..+.++++|++||+++|++|++|+   |.++.+
T Consensus       382 ~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~Na---G~d~~~  458 (545)
T 1a6d_A          382 SEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENA---GIDPIN  458 (545)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHH---TSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHc---CCCHHH
Confidence            999999999999999999999999999999999999999986     899999999999999999999999   789988


Q ss_pred             HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      +..  .|+..+  .++..++|+|+.+|++.|+ .+.||||+..++.++++++.-+
T Consensus       459 ~v~--~l~~~h--~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~e~  508 (545)
T 1a6d_A          459 TLI--KLKADD--EKGRISVGVDLDNNGVGDM-KAKGVVDPLRVKTHALESAVEV  508 (545)
T ss_dssp             HHH--HHHHHH--HTTCTTEEEETTTTEEEEH-HHHTCEEEHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHh--hcCCCCcceecccCccccc-hhcCccccHHHHHHHHHHHHHH
Confidence            775  344322  2355579999999999987 5789999999999999988643

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=100.00  E-value=3e-35  Score=279.05  Aligned_cols=185  Identities=19%  Similarity=0.283  Sum_probs=163.0

Q ss_pred             chhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHH
Q psy2833          23 KVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVAR   99 (216)
Q Consensus        23 ~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~   99 (216)
                      .+++...+|||+++++++++++   |+|+.|+++++|+++|+||++|+++++|||+|||+|+++++|+||+++||+++++
T Consensus       324 ~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r  403 (546)
T 3p9d_F          324 NMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVA  403 (546)
T ss_dssp             HHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCCSCEEEECCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence            3555556799999999999986   9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEecCCchhHHHHHHHhh---hh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHH-hh
Q psy2833         100 NIMLEPKLVPGGGAVEMAVSHVSAS---KD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSC-FQ  170 (216)
Q Consensus       100 ~~~~~~~vV~GGGa~E~~ls~~L~~---~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~-~a  170 (216)
                      ++++++++|||||++|+++|.+|++   |+     .++.++++|++||+++|++|++|+   |.++.++..  .|+. |+
T Consensus       404 ~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~~~~v~--~l~~~h~  478 (546)
T 3p9d_F          404 NVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNS---GFDPLDVLA--MVEDELD  478 (546)
T ss_dssp             HHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTT---CCTTTTCCH--HHHHHHH
T ss_pred             HHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHHHhh
Confidence            9999999999999999999999999   44     899999999999999999999999   778887654  2332 22


Q ss_pred             h--hcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         171 D--NLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       171 ~--~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      .  ..++..++|+|+.+|++.|| .+.||||+..++.++++++.-
T Consensus       479 ~~~~~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~al~~A~~  522 (546)
T 3p9d_F          479 DAQDSDETRYVGVDLNIGDSCDP-TIEGIWDSYRVLRNAITGATG  522 (546)
T ss_dssp             HHTTSTTSSCCCCBTTTTBCCCS-GGGTCEEEHHHHHHHHHHHHH
T ss_pred             hhhcccCCceeeEeCCCCeecch-HhccCEecHHHHHHHHHHHHH
Confidence            1  11233579999999999987 578999999999999988753

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=100.00  E-value=3.8e-35  Score=278.62  Aligned_cols=195  Identities=21%  Similarity=0.276  Sum_probs=170.7

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL   83 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~   83 (216)
                      +.++++.+..+++    +++...+||++++++++++++   |+|+.|+++++|+++|++|++|+++++|||+|||+|+++
T Consensus       310 ~gI~~v~~v~k~~----lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~~~~tI~lrG~te~~  385 (550)
T 3p9d_G          310 RNIFCAGRVSADD----MNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQV  385 (550)
T ss_dssp             GTCEEEECCCTTH----HHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTCCCCCCCBCSSSHHH
T ss_pred             cCCccccCcCHHH----HHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCCceeEEEEeCCcHHH
Confidence            3456665554433    344455799999999999986   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833          84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV  158 (216)
Q Consensus        84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~  158 (216)
                      ++|+||+++||+++++++++++++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |.++.
T Consensus       386 l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~~  462 (550)
T 3p9d_G          386 IAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENA---GFDAI  462 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTS---CSCHH
T ss_pred             HHHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHH
Confidence            9999999999999999999999999999999999999999986     899999999999999999999999   88999


Q ss_pred             HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ++..  .|+..+  .++..++|+|+.+|++.|| .++||||+..++.+++++|.-
T Consensus       463 ~vv~--~l~~~h--~~~~~~~G~d~~~g~~~dm-~~~gI~dp~~vk~~al~~A~~  512 (550)
T 3p9d_G          463 EILN--KLRLAH--SKGEKWYGVVFETENIGDN-FAKFVWEPALVKINALNSATE  512 (550)
T ss_dssp             HHHH--HHHHHH--HHSCSCCCBCSSSSSBCCH-HHHTCEEEHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHH--hcCCCceeeeCCCCcccch-HhccCEecHHHHHHHHHHHHH
Confidence            8765  333322  2355579999999999987 578999999999999988764

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=100.00  E-value=7.6e-35  Score=275.33  Aligned_cols=194  Identities=17%  Similarity=0.219  Sum_probs=170.8

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecC--C-CceEEEEEeCCCh
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQ--N-PKACTILLRGASK   81 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~--~-~~~~TIllrG~t~   81 (216)
                      .++++++..+++    +++...+||++++++++++++   |+|+.|++.++|+++|++|++|+  + +++|||+|||+|+
T Consensus       309 ~I~av~~~~k~~----le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te  384 (528)
T 3p9d_D          309 NIMVVKDIEREE----IEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANN  384 (528)
T ss_dssp             SCCEEECCCTHH----HHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSST
T ss_pred             CcEEEEeCCHHH----HHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCH
Confidence            467777544443    444556799999999999876   99999999999999999999998  6 8999999999999


Q ss_pred             hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833          82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG  156 (216)
Q Consensus        82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg  156 (216)
                      ++++|+||+++||++++++++++|++|||||++|++++.+|++++     .++.++++|++||+++|++|++|+   |.+
T Consensus       385 ~~l~E~kr~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d  461 (528)
T 3p9d_D          385 MIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENA---GLN  461 (528)
T ss_dssp             THHHHHHHHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTT---SSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHc---CCC
Confidence            999999999999999999999999999999999999999999986     899999999999999999999999   889


Q ss_pred             hhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      +.++..  .|+  +.|..+..++|+|+.+|++.|| .++||||+..++.+++++|.-
T Consensus       462 ~~~vv~--~l~--~~h~~~~~~~G~d~~~g~~~dm-~~~gI~dp~~vk~~al~~A~e  513 (528)
T 3p9d_D          462 SIKVVT--ELR--SKHENGELNDGISVRRSGTTNT-YEEHILQPVLVSTSAITLASE  513 (528)
T ss_dssp             HHHHHH--HHT--TCCCSSSCCCCCCSSSSSCCCH-HHHCCEEEHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHH--HHHhccCCccceecCCCCccch-HhccCeecHHHHHHHHHHHHH
Confidence            998765  232  3334566689999999999987 578999999999999988764

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=100.00  E-value=3.7e-35  Score=279.60  Aligned_cols=196  Identities=17%  Similarity=0.179  Sum_probs=169.6

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecC--CCceEEEEEeCCChh
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQ--NPKACTILLRGASKD   82 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~--~~~~~TIllrG~t~~   82 (216)
                      .+++++.-.+++    +++...+|||+++++++++++   |+|+.|+++++|+++|+||++|+  ++++|||+|||+|++
T Consensus       317 gI~av~~v~~~~----leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~  392 (568)
T 3p9d_H          317 GILVLKVPSKFE----LRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQN  392 (568)
T ss_dssp             TCEEECCCCHHH----HHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHH
T ss_pred             CeEEEecCCHHH----HHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHH
Confidence            355665554433    444556799999999999886   99999999999999999999998  799999999999999


Q ss_pred             hHHHHHHHhchhhHHHHHHhc--CCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCC
Q psy2833          83 LLNETERNLQDALHVARNIML--EPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGG  155 (216)
Q Consensus        83 ~l~E~ersi~Dal~v~~~~~~--~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Gg  155 (216)
                      +++|+||+++||+++++++++  |+++|||||++|+++|.+|++++     .+++++++|++||++||++|++|+   |.
T Consensus       393 ~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~Na---G~  469 (568)
T 3p9d_H          393 NLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETA---GL  469 (568)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHH---TC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc---CC
Confidence            999999999999999999999  99999999999999999999996     899999999999999999999999   88


Q ss_pred             ChhHHHHHHHHHHhhhh------cCCceEEEEeeccCC---CCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         156 GAVEMAVSHVSSCFQDN------LLGRVVVTLGLHAGG---PGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       156 ga~E~~~s~~L~~~a~~------~~g~~~~~i~~~~~~---~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ++.++..  .|+..+..      ..+..++|+|+.+|+   +.|| .++||||+..++.+++++|.-
T Consensus       470 d~~~~v~--~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~-~~~gI~dp~~vk~~al~~A~e  533 (568)
T 3p9d_H          470 DVNEVLP--NLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDI-REENIYDMLATKKFAINVATE  533 (568)
T ss_dssp             CHHHHHH--HHHHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHH-HHHHHHHHHHHHHHHHHCCEE
T ss_pred             CHHHHHH--HHHHHhhhhcccccccCCCceeEcccCCCcccccCh-HHccCEEcHHHHHHHHHHHHH
Confidence            9998875  34332211      125567999999997   8877 568999999999999998753

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=100.00  E-value=1.1e-33  Score=270.51  Aligned_cols=182  Identities=31%  Similarity=0.484  Sum_probs=158.3

Q ss_pred             hhhhhhhcCceeeeeecccCc---ce-eceEEEEEECCeEEEEEeecCCCce----------------------------
Q psy2833          24 VQLENIQAGKYIDSSIVTLNH---WL-CSSQDACLLGDEYFCYITECQNPKA----------------------------   71 (216)
Q Consensus        24 ~~~~~i~~G~~i~~sl~~~~~---g~-c~~v~~~~ig~~~~~~~~~~~~~~~----------------------------   71 (216)
                      ++...++|||+++++++++++   |+ |+.|+++++|+++|+||++|++++.                            
T Consensus       325 le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~i~  404 (590)
T 3p9d_C          325 NNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAA  404 (590)
T ss_dssp             HHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC----------------------------------
T ss_pred             HHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccccccccccccchhhhhcchhhHHHH
Confidence            444455699999999999886   99 9999999999999999999988877                            


Q ss_pred             ----------------------------EEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833          72 ----------------------------CTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA  123 (216)
Q Consensus        72 ----------------------------~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~  123 (216)
                                                  |||+|||+|+++++|.||+++||++++++++++|++|||||++|+++|.+|+
T Consensus       405 ~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~  484 (590)
T 3p9d_C          405 NRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLA  484 (590)
T ss_dssp             -----------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHH
Confidence                                        9999999999999999999999999999999999999999999999999999


Q ss_pred             hhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833         124 SKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF  198 (216)
Q Consensus       124 ~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~  198 (216)
                      +++     .++.++++|++||+++|++|++|+   |.++.++..  .|+..  |..+..++|+|+.+|++.|| .++|||
T Consensus       485 ~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~~~vv~--~l~~~--h~~~~~~~G~d~~~g~~~dm-~~~gI~  556 (590)
T 3p9d_C          485 EKAKQLEGIQQWPYQAVADAMECIPRTLIQNA---GGDPIRLLS--QLRAK--HAQGNFTTGIDGDKGKIVDM-VSYGIW  556 (590)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHH--HHHHH--HTTSCTTCBCCTTSSSCBCT-TTTTCC
T ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHHH--HhcCCCCEeEeCCCCeEeeh-HHcCCe
Confidence            985     899999999999999999999999   889988765  33332  22355679999999999988 578999


Q ss_pred             ccchhhhhhhhhhhh
Q psy2833         199 FGSVLGVRGALSLVR  213 (216)
Q Consensus       199 ~~~~~~~~~~~~~~~  213 (216)
                      |+..++.+++++|.-
T Consensus       557 dp~~vk~~al~~A~e  571 (590)
T 3p9d_C          557 EPEVIKQQSVKTAIE  571 (590)
T ss_dssp             EEHHHHHHHHHHHHH
T ss_pred             EcHHHHHHHHHHHHH
Confidence            999999999988754

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=100.00  E-value=1.9e-34  Score=272.48  Aligned_cols=182  Identities=24%  Similarity=0.292  Sum_probs=164.0

Q ss_pred             hhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHHH
Q psy2833          24 VQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARN  100 (216)
Q Consensus        24 ~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~  100 (216)
                      ++....+||++++++++++++   |+|+.|+++++|+++|++|++|+++++|||+|||+|+++++|.||+++||++++++
T Consensus       314 le~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~  393 (527)
T 3p9d_B          314 VERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQ  393 (527)
T ss_dssp             HHHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCSCCEECBCCTTCTTHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            555556799999999999886   99999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCC
Q psy2833         101 IMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLG  175 (216)
Q Consensus       101 ~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g  175 (216)
                      ++++|++|||||++|+++|.+|++++     .++.++++|++||+++|++|++|+   |.++.++..  +|+..+  ..+
T Consensus       394 av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~Na---G~d~~~vv~--~l~~~h--~~~  466 (527)
T 3p9d_B          394 TTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNA---GFDSSELVS--KLRSSI--YNG  466 (527)
T ss_dssp             HHHCCCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH---TSCSHHHHH--HHHHHH--HHT
T ss_pred             HHhcCCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc---CCCHHHHHH--HHHHHH--hcC
Confidence            99999999999999999999999986     899999999999999999999999   778888764  233322  234


Q ss_pred             ceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         176 RVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       176 ~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      ..++|+|+.+|++.|| .++||||+..++.+++++|.-
T Consensus       467 ~~~~G~d~~~g~~~dm-~~~gI~dp~~vk~~al~~A~e  503 (527)
T 3p9d_B          467 ISTSGLDLNNGTIADM-RQLGIVESYKLKRAVVSSASE  503 (527)
T ss_dssp             CSCCCCCSSSTTCCCH-HHHTCEEETTHHHHHHHHHHH
T ss_pred             CCceeEECCCCCCcch-HhccCEEcHHHHHHHHHHHHH
Confidence            5579999999999988 468999999999999988754

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=99.96  E-value=3.6e-30  Score=244.11  Aligned_cols=194  Identities=13%  Similarity=0.044  Sum_probs=163.2

Q ss_pred             CcEEEEecCcccc-cccchhhhhhhcCceeeee-----ecccCc---ceeceEEEEEECCeEEEEEeecCCC--------
Q psy2833           7 APVLVLSSNTKRD-SGRKVQLENIQAGKYIDSS-----IVTLNH---WLCSSQDACLLGDEYFCYITECQNP--------   69 (216)
Q Consensus         7 ~~~~v~~~~~~r~-~~~~~~~~~i~~G~~i~~s-----l~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~--------   69 (216)
                      .++++++-...++ ....++...+.||++++++     ++++++   |+|+.|++   +++++++|++|+++        
T Consensus       269 ~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~  345 (543)
T 1we3_A          269 LSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKKEDIEARIN  345 (543)
T ss_dssp             CCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCHHHHHHHHH
T ss_pred             eeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCHHHHHHHHH
Confidence            4566666443322 2333455556699999996     888876   99999976   46899999999864        


Q ss_pred             ---------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833          70 ---------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS  122 (216)
Q Consensus        70 ---------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L  122 (216)
                                                 ++|||+|||+|+++++|.||+++||+++++++++++ +|||||++|++++.+|
T Consensus       346 ~i~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L  424 (543)
T 1we3_A          346 GIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAV  424 (543)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHH
T ss_pred             HHHHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHH
Confidence                                       789999999999999999999999999999999999 9999999999999999


Q ss_pred             hhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcc
Q psy2833         123 ASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEV  197 (216)
Q Consensus       123 ~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi  197 (216)
                      ++++     .++.++++|++||+++|++|++|+   |.++.++..  .|+..  |  +..++|+|+.+|++.|+ .+.||
T Consensus       425 ~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~Na---G~d~~~vv~--~l~~~--h--~~~~~G~d~~~g~~~dm-~~~gI  494 (543)
T 1we3_A          425 EELIKKLEGDEATGAKIVRRALEEPARQIAENA---GYEGSVIVQ--QILAE--T--KNPRYGFNAATGEFVDM-VEAGI  494 (543)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHH---TSCHHHHHH--HHHHC--C--SCTTEEEETTTTEEEET-TTTTC
T ss_pred             HHHhhccCchHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHH--HHHHh--c--CCCCEEEeCCCCeeccc-ccCCc
Confidence            9986     789999999999999999999999   778888765  34432  1  23569999999999987 58999


Q ss_pred             cccchhhhhhhhhhhhh
Q psy2833         198 FFGSVLGVRGALSLVRI  214 (216)
Q Consensus       198 ~~~~~~~~~~~~~~~~~  214 (216)
                      ||++.++.++++++.-+
T Consensus       495 ~dp~~vk~~al~~A~e~  511 (543)
T 1we3_A          495 VDPAKVTRSALQNAASI  511 (543)
T ss_dssp             EEEHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHH
Confidence            99999999999988643

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=99.96  E-value=4.5e-30  Score=243.56  Aligned_cols=173  Identities=14%  Similarity=0.052  Sum_probs=152.5

Q ss_pred             hhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc-------------------------
Q psy2833          24 VQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK-------------------------   70 (216)
Q Consensus        24 ~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~-------------------------   70 (216)
                      ++...++||+++++     +++++++   |+|+.|+   ++++++++|++|++++                         
T Consensus       287 le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl  363 (546)
T 3rtk_A          287 LQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKL  363 (546)
T ss_dssp             HHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred             HHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHHHH
Confidence            33344559999999     6888876   9999997   5889999999998753                         


Q ss_pred             ----------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh---hhhHHHHHHHH
Q psy2833          71 ----------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD---LLNETERNLQD  137 (216)
Q Consensus        71 ----------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~---~~~e~~ra~ad  137 (216)
                                +|||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|++++   .++.++++|++
T Consensus       364 ~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~g~eq~~i~~~a~  442 (546)
T 3rtk_A          364 QERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELKLEGDEATGANIVKV  442 (546)
T ss_dssp             HHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSCCCTTHHHHHHHHHH
T ss_pred             HHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence                      89999999999999999999999999999999998 99999999999999999985   99999999999


Q ss_pred             HHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833         138 ALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLV  212 (216)
Q Consensus       138 AL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  212 (216)
                      ||+++|++|++|+   |.++.++..  .|+..   ..+   +|+|+.+|++.|| .++||||+..++.++++++.
T Consensus       443 ALe~ip~~La~Na---G~d~~~vv~--~l~~~---~~~---~G~d~~~g~~~Dm-~~~gI~dp~~vk~~al~~A~  505 (546)
T 3rtk_A          443 ALEAPLKQIAFNS---GLEPGVVAE--KVRNL---PAG---HGLNAQTGVYEDL-LAAGVADPVKVTRSALQNAA  505 (546)
T ss_dssp             HTTHHHHHHHTTT---TCCHHHHHH--HHHHS---CTT---EECCSSSCCCEET-TTTTCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc---CCCHHHHHH--HHHhh---cCC---EeEcCCCCcEeeH-HHcCCEecHHHHHHHHHHHH
Confidence            9999999999999   889888765  34442   122   8999999999988 57999999999999998875

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=99.96  E-value=1.3e-29  Score=240.51  Aligned_cols=193  Identities=13%  Similarity=0.032  Sum_probs=162.8

Q ss_pred             CCcEEEEecCccccc-ccchhhhhhhcCceeeee-----ecccCc---ceeceEEEEEECCeEEEEEeecCCC-------
Q psy2833           6 SAPVLVLSSNTKRDS-GRKVQLENIQAGKYIDSS-----IVTLNH---WLCSSQDACLLGDEYFCYITECQNP-------   69 (216)
Q Consensus         6 ~~~~~v~~~~~~r~~-~~~~~~~~i~~G~~i~~s-----l~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~-------   69 (216)
                      ..++++|+-..-++. ...++...+.||++++++     ++++++   |+|+.|++   +++++++|++|+++       
T Consensus       269 ~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~  345 (547)
T 1kp8_A          269 IVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEEAAIQGRV  345 (547)
T ss_dssp             SSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCHHHHHHHH
T ss_pred             ceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCHHHHHHHH
Confidence            345666663333222 333455556699999996     888876   99999977   46899999999875       


Q ss_pred             ----------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHH
Q psy2833          70 ----------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHV  121 (216)
Q Consensus        70 ----------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~  121 (216)
                                                  ++|||+|||+|+++++|.||+++||+++++++++++ +|||||++|++++.+
T Consensus       346 ~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~  424 (547)
T 1kp8_A          346 AQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASK  424 (547)
T ss_dssp             HHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHH
T ss_pred             HHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHH
Confidence                                        689999999999999999999999999999999999 999999999999999


Q ss_pred             Hhhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcc
Q psy2833         122 SASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEV  197 (216)
Q Consensus       122 L~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi  197 (216)
                      |++++    ..+.++++|++||+++|++|++|+   |.++.++..  +|+..      ..++|+|+.+|++.|+ .+.||
T Consensus       425 L~~~~~~~g~~q~~i~~~a~ALe~ip~~la~Na---G~d~~~vv~--~l~~~------~~~~G~d~~~g~~~dm-~~~gI  492 (547)
T 1kp8_A          425 LADLRGQNADQNVGIKVALRAMEAPLRQIVLNC---GEEPSVVAN--TVKGG------DGNYGYNAATEEYGNM-IDMGI  492 (547)
T ss_dssp             TTTCCCSSHHHHHHHHHHHHHTTHHHHHHHHHH---TSCHHHHHH--HHHHS------CTTEEEETTTTEEEET-TTTTC
T ss_pred             HHHHhccCchHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHhc------CCCEeEeCCCCccccc-hhcCc
Confidence            99986    889999999999999999999999   778888765  34322      2469999999999987 58999


Q ss_pred             cccchhhhhhhhhhhhh
Q psy2833         198 FFGSVLGVRGALSLVRI  214 (216)
Q Consensus       198 ~~~~~~~~~~~~~~~~~  214 (216)
                      ||+..++.++++++.-+
T Consensus       493 ~Dp~~vk~~al~~A~~~  509 (547)
T 1kp8_A          493 LDPTKVTRSALQYAASV  509 (547)
T ss_dssp             EEEHHHHHHHHHHHHHH
T ss_pred             eechHhHHHHHHHHHHH
Confidence            99999999999988643

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=99.96  E-value=3.6e-30  Score=244.27  Aligned_cols=177  Identities=14%  Similarity=0.066  Sum_probs=146.6

Q ss_pred             chhhhhhhcCceeeee-----ecccCc---ceeceEEEEEECCeEEEEEeecCCC-------------------------
Q psy2833          23 KVQLENIQAGKYIDSS-----IVTLNH---WLCSSQDACLLGDEYFCYITECQNP-------------------------   69 (216)
Q Consensus        23 ~~~~~~i~~G~~i~~s-----l~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~-------------------------   69 (216)
                      .++...++||++++++     ++++++   |+|+.|++   ++++|+||++|+++                         
T Consensus       288 ~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ek  364 (545)
T 1iok_A          288 MLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREK  364 (545)
T ss_dssp             HHHHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHHHH
T ss_pred             HHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhHHH
Confidence            3455556699999997     999876   99999987   46899999999865                         


Q ss_pred             ----------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh----hhhHHHHHH
Q psy2833          70 ----------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD----LLNETERNL  135 (216)
Q Consensus        70 ----------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~----~~~e~~ra~  135 (216)
                                ++|||+|||+|+++++|.||+++||+++++++++++ +|||||++|++++.+|++++    ..+.++++|
T Consensus       365 l~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~g~~q~~i~~~  443 (545)
T 1iok_A          365 LQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSGANSDQDAGIAII  443 (545)
T ss_dssp             HHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCCSSHHHHHHHHHH
T ss_pred             HHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence                      689999999999999999999999999999999999 99999999999999999985    889999999


Q ss_pred             HHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833         136 QDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI  214 (216)
Q Consensus       136 adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~  214 (216)
                      ++||+++|++|++|+   |.++.++..  .|+..  +   ..++|+|+.+|++.|+ .+.||||++.++.++++++.-+
T Consensus       444 a~ALe~ip~~La~Na---G~d~~~vv~--~l~~~--~---~~~~G~d~~~g~~~dm-~~~gI~dp~~vk~~al~~A~~~  511 (545)
T 1iok_A          444 RRALEAPMRQIAENA---GVDGAVVAG--KVRES--S---DKAFGFNAQTEEYGDM-FKFGVIDPAKVVRTALEDAASV  511 (545)
T ss_dssp             HHHTTHHHHHHHHHH---TSCHHHHHH--HHHSC--C---STTEEEETTTTEEEEH-HHHTCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc---CCCHHHHHH--HHHhh--c---CCCeeEeCCCCcccch-HhcCcEEccHHHHHHHHHHHHH
Confidence            999999999999999   789888865  33322  1   2469999999999987 5899999999999999988643

>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A

Probab=99.44  E-value=8e-14  Score=114.61  Aligned_cols=72  Identities=40%  Similarity=0.586  Sum_probs=58.5

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ce-eceEEEEEECCeEEEEEeecCCCceEEEEEeCCChh
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WL-CSSQDACLLGDEYFCYITECQNPKACTILLRGASKD   82 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~-c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~   82 (216)
                      +.+|++++-.+++..|    ...+|||+|+++++++++   |+ |+.|+++++|+++|+||++|+++++|||+|||+|.+
T Consensus        99 ~gI~~vr~v~~~dler----ia~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~~~~~TIllRG~~~~  174 (178)
T 1gml_A           99 ANVTAIRRVRKTDNNR----IARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASHH  174 (178)
T ss_dssp             TTCEEECCCCHHHHHH----HHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESSTTSCEEEEEC----
T ss_pred             CCCEEEecCCHHHHHH----HHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCCCCEEEEEEECCCcc
Confidence            3467776665555444    444899999999999986   99 999999999999999999999999999999999975

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.03  E-value=3.9e-11  Score=113.24  Aligned_cols=81  Identities=30%  Similarity=0.421  Sum_probs=74.1

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||+++.          .+++.+|+++|||+++++++.++++|||||++|+.+|..|++++.+.+|.+|+++++|+.+  
T Consensus       371 lrG~t~~----------~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe  440 (529)
T 3iyg_A          371 LRGANDF----------MCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLL  440 (529)
T ss_pred             ECCchHH----------HHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHH
Confidence            6777887          8899999999999999999999999999999999999999999999999999999999994  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       441 ~ip~~La~NaG~-d~~  455 (529)
T 3iyg_A          441 VIPNTLAVNAAQ-DST  455 (529)
T ss_pred             HHHHHHHHHcCC-CHH
Confidence              6778899985 554

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=98.96  E-value=1.1e-10  Score=109.85  Aligned_cols=81  Identities=38%  Similarity=0.514  Sum_probs=73.9

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .++|.+|+++|||+++++++.++++|||||++|+.++..|++++.+.+|.+|+++.+|+.+  
T Consensus       364 lrG~t~~----------~l~E~er~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale  433 (515)
T 3iyg_G          364 LRGASKE----------ILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALE  433 (515)
T ss_pred             EcCCCHH----------HHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence            6777787          7899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       434 ~ip~~La~NaG~-d~~  448 (515)
T 3iyg_G          434 VIPRTLIQNCGA-STI  448 (515)
T ss_pred             HHHHHHHHhcCC-CHH
Confidence              6778899995 555

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=98.95  E-value=8.8e-11  Score=110.62  Aligned_cols=81  Identities=21%  Similarity=0.310  Sum_probs=73.3

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC---
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG---  186 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~---  186 (216)
                      -||++|.          .++|.+|+++|||+++++++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.   
T Consensus       368 lrG~t~~----------~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe  437 (517)
T 3iyg_Z          368 IKGPNKH----------TLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALL  437 (517)
T ss_pred             ecCCcHH----------HHHHHHHHHHHHHHHHHHHHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            5667777          789999999999999999999999999999999999999999999999999999999998   


Q ss_pred             -CCCCCCCCCcccccc
Q psy2833         187 -GPGLIPGGAEVFFGS  201 (216)
Q Consensus       187 -~~~~~~~~~gi~~~~  201 (216)
                       .|+.+++|+|. |+.
T Consensus       438 ~iP~~La~NaG~-d~~  452 (517)
T 3iyg_Z          438 IIPKVLAQNSGF-DLQ  452 (517)
T ss_pred             HHHHHHHHHcCC-CHH
Confidence             37778999995 544

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=98.93  E-value=1.6e-10  Score=108.82  Aligned_cols=81  Identities=25%  Similarity=0.382  Sum_probs=74.7

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       369 lrG~te~----------~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe  438 (518)
T 3iyg_D          369 VRGSNKL----------VIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAME  438 (518)
T ss_pred             ECCCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence            7788888          7899999999999999999999999999999999999999999999999999999999994  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       439 ~ip~~La~NaG~-d~~  453 (518)
T 3iyg_D          439 VIPSTLAENAGL-NPI  453 (518)
T ss_pred             HHHHHHHHhcCC-CHH
Confidence              6778999996 665

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=98.92  E-value=1.7e-10  Score=108.56  Aligned_cols=81  Identities=30%  Similarity=0.422  Sum_probs=74.1

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||+++++++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       362 lrG~t~~----------~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe  431 (513)
T 3iyg_B          362 LRGATQQ----------ILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALR  431 (513)
T ss_pred             ecCCCHH----------HHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence            6788888          7899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       432 ~ip~~La~NaG~-d~~  446 (513)
T 3iyg_B          432 MLPTIIADNAGY-DSA  446 (513)
T ss_pred             HHHHHHHHhcCC-CHH
Confidence              6668899985 555

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=98.90  E-value=2.3e-10  Score=107.75  Aligned_cols=81  Identities=28%  Similarity=0.450  Sum_probs=73.6

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -+|++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       365 lrG~t~~----------~l~E~kr~i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe  434 (515)
T 3iyg_H          365 LRGGAEQ----------FMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALE  434 (515)
T ss_pred             EeCCcHH----------HHHHHHHHHHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            5668888          7899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       435 ~ip~~La~NaG~-d~~  449 (515)
T 3iyg_H          435 IIPRQLCDNAGF-DAT  449 (515)
T ss_pred             HHHHHHHHhcCC-CHH
Confidence              6678899985 554

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=98.90  E-value=7.3e-10  Score=104.25  Aligned_cols=83  Identities=25%  Similarity=0.323  Sum_probs=74.7

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +.-||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+
T Consensus       363 I~lrG~te~----------~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~A  432 (515)
T 3iyg_E          363 IFIRGGNKM----------IIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADA  432 (515)
T ss_pred             EEEeCCcHH----------HHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            336778888          7899999999999999999999999999999999999999999999999999999999984


Q ss_pred             ----CCCCCCCCcccccc
Q psy2833         188 ----PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 ----~~~~~~~~gi~~~~  201 (216)
                          |+.+++|+|. |+.
T Consensus       433 Le~ip~~La~NaG~-d~~  449 (515)
T 3iyg_E          433 LEVIPMALAENSGM-NPI  449 (515)
T ss_pred             HHHHHHHHHHhCCC-CHH
Confidence                6668899985 554

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=98.89  E-value=3e-10  Score=106.75  Aligned_cols=83  Identities=20%  Similarity=0.394  Sum_probs=75.5

Q ss_pred             EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      +--||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+
T Consensus       359 I~lrG~te~----------~l~E~kr~i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~A  428 (512)
T 3iyg_Q          359 IVLRGSTDN----------LMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEA  428 (512)
T ss_pred             EEECCCcHH----------HHHHHHHHHHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            337888888          7899999999999999999999999999999999999999999999999999999999984


Q ss_pred             ----CCCCCCCCcccccc
Q psy2833         188 ----PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 ----~~~~~~~~gi~~~~  201 (216)
                          |+.+++|+|. |+.
T Consensus       429 Le~ip~~La~NaG~-d~~  445 (512)
T 3iyg_Q          429 FEAIPRALAENSGV-KAN  445 (512)
T ss_pred             HHHHHHHHHHhcCC-CHH
Confidence                6678999996 665

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=98.86  E-value=2.9e-10  Score=107.89  Aligned_cols=81  Identities=26%  Similarity=0.398  Sum_probs=73.4

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||+++++++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       378 lrG~te~----------~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe  447 (550)
T 3p9d_G          378 LRGGAEQ----------VIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALE  447 (550)
T ss_dssp             BCSSSHH----------HHHHHHHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHT
T ss_pred             EeCCcHH----------HHHHHHHHHHhHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence            5677787          7899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       448 ~ip~~La~NaG~-d~~  462 (550)
T 3p9d_G          448 VIPRQLCENAGF-DAI  462 (550)
T ss_dssp             HHHHHHHHTSCS-CHH
T ss_pred             HHHHHHHHhcCC-CHH
Confidence              6667899985 555

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=98.85  E-value=2.2e-10  Score=108.86  Aligned_cols=81  Identities=30%  Similarity=0.392  Sum_probs=73.7

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||+++++++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       387 lrG~te~----------~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe  456 (559)
T 3p9d_A          387 LRGANDY----------SLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALL  456 (559)
T ss_dssp             EEESCHH----------HHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred             EcCCCHH----------HHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence            6777887          7899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       457 ~ip~~La~NaG~-d~~  471 (559)
T 3p9d_A          457 IIPKTLAVNAAK-DSS  471 (559)
T ss_dssp             HHHHHHHHTSSS-CCH
T ss_pred             HHHHHHHHHCCC-CHH
Confidence              6668899984 555

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=98.85  E-value=2.2e-10  Score=108.98  Aligned_cols=81  Identities=28%  Similarity=0.351  Sum_probs=73.3

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||+++++++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       408 lrG~te~----------~l~E~kr~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe  477 (562)
T 3p9d_E          408 VRGSNKM----------IVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALD  477 (562)
T ss_dssp             EECTTTT----------THHHHTHHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHT
T ss_pred             EeCCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHH
Confidence            5667887          7899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       478 ~ip~~La~NaG~-d~~  492 (562)
T 3p9d_E          478 TIPMTLAENSGL-DPI  492 (562)
T ss_dssp             HHHHHHHHTTTS-CHH
T ss_pred             HHHHHHHHhcCC-CHH
Confidence              6667899985 555

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=98.84  E-value=3.6e-10  Score=107.03  Aligned_cols=84  Identities=18%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHH---hhhhcCCceEEEEee
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSC---FQDNLLGRVVVTLGL  183 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~---~a~~~~g~~~~~i~~  183 (216)
                      .+.-||++|.          .+++.+|+++|||+++++++.++++|||||++|+.++..|++   |+...+|.+|+++++
T Consensus       377 tI~lrG~te~----------~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~  446 (546)
T 3p9d_F          377 TILIKGSTHY----------ALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEA  446 (546)
T ss_dssp             EEECCCSCHH----------HHHHHHHHHHHHHHHHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHH
T ss_pred             EEEECCCCHH----------HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence            3347888888          789999999999999999999999999999999999999999   588899999999999


Q ss_pred             ccCC----CCCCCCCCcccccc
Q psy2833         184 HAGG----PGLIPGGAEVFFGS  201 (216)
Q Consensus       184 ~~~~----~~~~~~~~gi~~~~  201 (216)
                      |+.+    |+.+++|+|. |+.
T Consensus       447 ~a~ALe~ip~~La~NaG~-d~~  467 (546)
T 3p9d_F          447 FAEALLVIPKTLVKNSGF-DPL  467 (546)
T ss_dssp             HHHHHHHHHHHHHTTTCC-TTT
T ss_pred             HHHHHHHHHHHHHHHcCC-CHH
Confidence            9994    6778899985 555

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=98.83  E-value=2.4e-10  Score=107.81  Aligned_cols=81  Identities=31%  Similarity=0.412  Sum_probs=74.2

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       369 lrg~te~----------~l~E~kr~i~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe  438 (527)
T 3p9d_B          369 LRGATDQ----------TLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALR  438 (527)
T ss_dssp             CCTTCTT----------HHHHHHTHHHHHHHHHHHHHHCCCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             EcCCCHH----------HHHHHHHHHHHHHHHHHHHHhcCCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            7888888          7899999999999999999999999999999999999999999998999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       439 ~ip~~La~NaG~-d~~  453 (527)
T 3p9d_B          439 QLPTILADNAGF-DSS  453 (527)
T ss_dssp             HHHHHHHHHHTS-CSH
T ss_pred             HHHHHHHhccCC-CHH
Confidence              6667889985 555

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=98.83  E-value=2.2e-10  Score=108.76  Aligned_cols=81  Identities=25%  Similarity=0.372  Sum_probs=72.8

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||+++++++.++++|||||++|+.++..|++++.+.+|.+|+++++|+..  
T Consensus       383 lrG~te~----------~l~E~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe  452 (553)
T 3ko1_A          383 IRGGLER----------LVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALE  452 (553)
T ss_dssp             ECCSSTT----------HHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             eeccHHH----------HHHHHHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHH
Confidence            5777777          7899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       453 ~ip~~La~NaG~-d~~  467 (553)
T 3ko1_A          453 SLVSILIENAGF-DPI  467 (553)
T ss_dssp             HHHHHHHHHHTS-CHH
T ss_pred             hHHHHHHHhcCC-CHH
Confidence              6667888884 444

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=98.82  E-value=3.1e-10  Score=108.06  Aligned_cols=81  Identities=22%  Similarity=0.326  Sum_probs=72.7

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh--cCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIML--EPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~--~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~  187 (216)
                      -||++|.          .+++.+|+++|||+++++++.  ++++|||||++|+.++..|++++.+.+|.+|+++++|+.+
T Consensus       386 lrG~t~~----------~l~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~A  455 (568)
T 3p9d_H          386 LRGATQN----------NLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVA  455 (568)
T ss_dssp             EEESCHH----------HHHHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHG
T ss_pred             ECCCcHH----------HHHHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            5667777          789999999999999999998  8999999999999999999999999999999999999985


Q ss_pred             ----CCCCCCCCcccccc
Q psy2833         188 ----PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 ----~~~~~~~~gi~~~~  201 (216)
                          |+.+++|+|. |+.
T Consensus       456 Le~ip~~La~NaG~-d~~  472 (568)
T 3p9d_H          456 FEVVPRTLAETAGL-DVN  472 (568)
T ss_dssp             GGHHHHHHHHHHTC-CHH
T ss_pred             HHHHHHHHHHHcCC-CHH
Confidence                5667888885 554

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=98.82  E-value=2.8e-10  Score=107.80  Aligned_cols=81  Identities=22%  Similarity=0.359  Sum_probs=72.8

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||+++++++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       369 lrG~te~----------~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe  438 (543)
T 3ruv_A          369 IRGTTEH----------VIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALE  438 (543)
T ss_dssp             EEESSHH----------HHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHT
T ss_pred             ecCCCHH----------HHHHHHHHHHHHHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence            4666777          7899999999999999999999999999999999999999999999999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       439 ~ip~~La~NaG~-d~~  453 (543)
T 3ruv_A          439 VIPRTLAENAGL-DAI  453 (543)
T ss_dssp             HHHHHHHHHTTC-CHH
T ss_pred             HHHHHHHHhcCC-CHH
Confidence              6667889985 554

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=98.81  E-value=2.7e-10  Score=106.90  Aligned_cols=81  Identities=27%  Similarity=0.362  Sum_probs=73.5

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       327 lrG~t~~----------~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe  396 (500)
T 3aq1_B          327 LHGGTEH----------VVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALE  396 (500)
T ss_dssp             EEESSHH----------HHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTT
T ss_pred             ecCCcHH----------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHH
Confidence            6777887          8999999999999999999999999999999999999999999998999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       397 ~ip~~La~NaG~-d~~  411 (500)
T 3aq1_B          397 VIPVALAENAGL-DPI  411 (500)
T ss_dssp             HHHHHHHHHTTC-CHH
T ss_pred             HHHHHHHHHcCC-CHH
Confidence              6667889985 554

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=98.78  E-value=6e-10  Score=106.52  Aligned_cols=84  Identities=39%  Similarity=0.419  Sum_probs=74.8

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+--||++|.          .++|.+|+++|||++++.++.++.+|||||++|+.++..|++++...+|.+|+++++|+.
T Consensus       434 tI~lrg~te~----------~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~  503 (590)
T 3p9d_C          434 TIMLRGGSKD----------ILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVAD  503 (590)
T ss_dssp             CEEEECSSTT----------THHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred             EEEEcCCCHH----------HHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            3346678888          789999999999999999999999999999999999999999999999999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      +    |+.+++|+|. |+.
T Consensus       504 ALe~ip~~La~NaG~-d~~  521 (590)
T 3p9d_C          504 AMECIPRTLIQNAGG-DPI  521 (590)
T ss_dssp             HTTHHHHHHHHTTCS-CHH
T ss_pred             HHHHHHHHHHHHcCC-CHH
Confidence            4    5667889995 655

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=98.78  E-value=3.7e-10  Score=106.90  Aligned_cols=81  Identities=22%  Similarity=0.367  Sum_probs=73.2

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       374 lrG~t~~----------~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe  443 (543)
T 1a6d_B          374 VRGETEH----------VVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIE  443 (543)
T ss_dssp             EEESSHH----------HHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHT
T ss_pred             ecCCCHH----------HHHHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHH
Confidence            6677777          8999999999999999999999999999999999999999999998999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       444 ~ip~~La~NaG~-d~~  458 (543)
T 1a6d_B          444 EIPRALAENAGL-DPI  458 (543)
T ss_dssp             HHHHHHHHHHTC-CHH
T ss_pred             HHHHHHHHHcCC-ChH
Confidence              6667888885 554

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=98.75  E-value=4.3e-10  Score=106.14  Aligned_cols=84  Identities=32%  Similarity=0.372  Sum_probs=74.5

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.
T Consensus       376 tI~lrG~te~----------~l~E~kr~i~DAl~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~  445 (528)
T 3p9d_D          376 SVVIRGANNM----------IIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFAS  445 (528)
T ss_dssp             EEECCCSSTT----------HHHHHHHHHTTTHHHHHHHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHH
T ss_pred             EEEEcCCCHH----------HHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence            3337777777          789999999999999999999999999999999999999999998899999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      +    |+.+++|+|. |+.
T Consensus       446 ALe~ip~~La~NaG~-d~~  463 (528)
T 3p9d_D          446 ALEVIPTTLAENAGL-NSI  463 (528)
T ss_dssp             HHTHHHHHHHHTTSS-CHH
T ss_pred             HHHHHHHHHHHHcCC-CHH
Confidence            4    6667889984 554

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=98.75  E-value=4.7e-10  Score=106.36  Aligned_cols=81  Identities=23%  Similarity=0.400  Sum_probs=73.2

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++.+.+|.+|+++++|+.+  
T Consensus       376 lrG~te~----------~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe  445 (548)
T 1q3q_A          376 IRGGTEH----------VIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALK  445 (548)
T ss_dssp             EEESSHH----------HHHHHHHHHHHHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT
T ss_pred             ECCCChH----------HHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence            6677777          8999999999999999999999999999999999999999999988899999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       446 ~ip~~La~NaG~-d~~  460 (548)
T 1q3q_A          446 IIPKTLAENAGL-DTV  460 (548)
T ss_dssp             HHHHHHHHHTTC-CHH
T ss_pred             HHHHHHHHHcCC-CHH
Confidence              6667889986 554

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=98.74  E-value=4.8e-10  Score=106.22  Aligned_cols=81  Identities=25%  Similarity=0.331  Sum_probs=73.5

Q ss_pred             cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833         110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--  187 (216)
Q Consensus       110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--  187 (216)
                      -||++|.          .+++.+|+++|||++++.++.++++|||||++|+.++..|++++...++.+|+++++|+.+  
T Consensus       373 lrG~te~----------~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe  442 (545)
T 1a6d_A          373 IRGGTDH----------VVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALE  442 (545)
T ss_dssp             ECCSSST----------THHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             EcCCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHH
Confidence            6777888          8999999999999999999999999999999999999999999998999999999999984  


Q ss_pred             --CCCCCCCCcccccc
Q psy2833         188 --PGLIPGGAEVFFGS  201 (216)
Q Consensus       188 --~~~~~~~~gi~~~~  201 (216)
                        |+.+++|+|. |+.
T Consensus       443 ~ip~~La~NaG~-d~~  457 (545)
T 1a6d_A          443 IIPRTLAENAGI-DPI  457 (545)
T ss_dssp             HHHHHHHHHHTS-CHH
T ss_pred             HHHHHHHHHcCC-CHH
Confidence              6667888885 554

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=98.64  E-value=5.6e-09  Score=98.93  Aligned_cols=83  Identities=25%  Similarity=0.323  Sum_probs=73.8

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||++|.          .++|.+|+++|||++++.++.++ +|||||++|+.++..|++++.+.+|.+|+++++|+.
T Consensus       376 tI~lrG~te~----------~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~  444 (543)
T 1we3_A          376 VIRVGAATET----------ELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRR  444 (543)
T ss_dssp             EEEECCSSHH----------HHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             EEEeCCCCHH----------HHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Confidence            4448999999          78999999999999999999987 999999999999999999998889999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      .    |+.+++|+|. |+.
T Consensus       445 ALe~ip~~La~NaG~-d~~  462 (543)
T 1we3_A          445 ALEEPARQIAENAGY-EGS  462 (543)
T ss_dssp             HTTHHHHHHHHHHTS-CHH
T ss_pred             HHHHHHHHHHHHCCC-CHH
Confidence            4    5557888884 555

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=98.57  E-value=3.5e-09  Score=100.40  Aligned_cols=81  Identities=20%  Similarity=0.256  Sum_probs=72.0

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      ++.-||++|.          .++|.+|+++|||+++++++.++ +|||||++|+.++..|++++  .+|.+|+++++|+.
T Consensus       376 tI~vrG~te~----------~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~--~~g~eq~~i~~~a~  442 (546)
T 3rtk_A          376 VIKAGAATEV----------ELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK--LEGDEATGANIVKV  442 (546)
T ss_dssp             EEECCCCSST----------HHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC--CCTTHHHHHHHHHH
T ss_pred             EEEeCCCCHH----------HHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence            4558899999          78999999999999999999887 99999999999999999988  79999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      .    |+.+++|+|. |+.
T Consensus       443 ALe~ip~~La~NaG~-d~~  460 (546)
T 3rtk_A          443 ALEAPLKQIAFNSGL-EPG  460 (546)
T ss_dssp             HTTHHHHHHHTTTTC-CHH
T ss_pred             HHHHHHHHHHHHcCC-CHH
Confidence            4    6667899985 554

>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A

Probab=98.56  E-value=4.1e-08  Score=79.10  Aligned_cols=59  Identities=15%  Similarity=0.260  Sum_probs=47.5

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCC
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNP   69 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~   69 (216)
                      +.+|++++-.+++..|    ...+|||+|+++++++++   |+|+.|+++++|+++|+||++|++.
T Consensus        93 ~gI~~v~~v~~~dler----ia~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~  154 (159)
T 1ass_A           93 EGIYAVRRVKKSDMEK----LAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH  154 (159)
T ss_dssp             TTCEEECSCCHHHHHH----HHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred             CCCEEEccCCHHHHHH----HHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence            3467776665555444    444899999999999986   9999999999999999999999864

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=98.55  E-value=7.9e-09  Score=97.97  Aligned_cols=82  Identities=22%  Similarity=0.281  Sum_probs=71.8

Q ss_pred             EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      .+.-||++|.          .+++.+|+++|||++++.++.++ +|||||++|+.++..|++++. .++.+|+++++|+.
T Consensus       378 tI~lrG~te~----------~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i~~~a~  445 (545)
T 1iok_A          378 VIRVGGMTEI----------EVKERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG-ANSDQDAGIAIIRR  445 (545)
T ss_dssp             EEEECCSSHH----------HHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-SSHHHHHHHHHHHH
T ss_pred             EEEeCCCCHH----------HHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-cCchHHHHHHHHHH
Confidence            4448899999          78999999999999999999988 999999999999999999987 78999999999998


Q ss_pred             C----CCCCCCCCcccccc
Q psy2833         187 G----PGLIPGGAEVFFGS  201 (216)
Q Consensus       187 ~----~~~~~~~~gi~~~~  201 (216)
                      .    |+.+++|+|. |+.
T Consensus       446 ALe~ip~~La~NaG~-d~~  463 (545)
T 1iok_A          446 ALEAPMRQIAENAGV-DGA  463 (545)
T ss_dssp             HTTHHHHHHHHHHTS-CHH
T ss_pred             HHHHHHHHHHHHcCC-CHH
Confidence            4    5557778885 444

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=98.53  E-value=1e-08  Score=97.31  Aligned_cols=83  Identities=22%  Similarity=0.227  Sum_probs=72.6

Q ss_pred             eEEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeecc
Q psy2833         106 KLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHA  185 (216)
Q Consensus       106 ~vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~  185 (216)
                      ..+.-||++|.          .+++.+|+++|||++++.++.++ +|||||++|+.++..|++++. .++.+|+++++|+
T Consensus       376 ~tI~vrG~te~----------~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i~~~a  443 (547)
T 1kp8_A          376 AVIKVGAATEV----------EMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG-QNADQNVGIKVAL  443 (547)
T ss_dssp             EEEECCCSSHH----------HHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC-SSHHHHHHHHHHH
T ss_pred             EEEEEcCCcHh----------HHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc-cCchHHHHHHHHH
Confidence            35558999999          78999999999999999999988 999999999999999999987 7889999999999


Q ss_pred             CC----CCCCCCCCcccccc
Q psy2833         186 GG----PGLIPGGAEVFFGS  201 (216)
Q Consensus       186 ~~----~~~~~~~~gi~~~~  201 (216)
                      ..    |+.+++|+|. |+.
T Consensus       444 ~ALe~ip~~la~NaG~-d~~  462 (547)
T 1kp8_A          444 RAMEAPLRQIVLNCGE-EPS  462 (547)
T ss_dssp             HHTTHHHHHHHHHHTS-CHH
T ss_pred             HHHHHHHHHHHHHcCC-CHH
Confidence            84    5557888884 554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1gmla_	168	c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc	6e-07

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 35  IDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRG 78
            +              +   +GDEYF +IT+C++PKACTILLRG
Sbjct: 125 PEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.61
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.3
d1gmla_	168	Thermosome, A-domain {Mouse (Mus musculus), gamma	98.99
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	98.94
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	98.77
d1a6db2	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	98.62
d1q3qa2	153	Thermosome, A-domain {Archaeon Thermococcus sp. ks	98.59
d1assa_	152	Thermosome, A-domain {Archaeon Thermoplasma acidop	98.4
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	98.35
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	97.49
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	95.53
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	93.72
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	92.37
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	86.15

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.61  E-value=4.7e-16  Score=131.71  Aligned_cols=131  Identities=13%  Similarity=0.118  Sum_probs=112.5

Q ss_pred             EEeCCChh-hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhc
Q psy2833          75 LLRGASKD-LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLE  148 (216)
Q Consensus        75 llrG~t~~-~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~  148 (216)
                      +-+|-++. +.+-+++++++++..++....+..+++|||++|+++|..|++++     +.++++++|++||++||++|++
T Consensus        94 i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~ggGa~e~~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~Lae  173 (243)
T d1a6db1          94 INQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAE  173 (243)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCchhHHHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccccc
Confidence            34466555 55668889999999999999999999999999999999999998     8899999999999999999999


Q ss_pred             CcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833         149 PKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR  213 (216)
Q Consensus       149 N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~  213 (216)
                      |+   |.++.|+...  |+  +.|.++..++|+|..+|++.|+ .+.||||+..++.++++++..
T Consensus       174 Na---G~d~~~~i~~--l~--~~h~~~~~~~Gvd~~~g~i~d~-~~~gV~dp~~vk~~ai~~A~e  230 (243)
T d1a6db1         174 NA---GLDPIDILLK--LR--AEHAKGNKTYGINVFTGEIEDM-VKNGVIEPIRVGKQAIESATE  230 (243)
T ss_dssp             HH---TCCHHHHHHH--HH--HHHHTTCTTEEEETTTTEEEET-TTTTCEEEHHHHHHHHHHHHH
T ss_pred             cC---CCChhHHHHH--HH--HHHhCCCCceeEECcCCEEeeh-HhcccEecHHHHHHHHHHHHH
Confidence            99   8899988763  22  3345677889999999999987 578999999999999888754

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.30  E-value=1e-12  Score=110.71  Aligned_cols=126  Identities=21%  Similarity=0.216  Sum_probs=100.8

Q ss_pred             CCChhh-HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcc
Q psy2833          78 GASKDL-LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKL  151 (216)
Q Consensus        78 G~t~~~-l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~  151 (216)
                      |-++.. .+.++.++++++..++.. .++.+++|||++|++++.+|..++     ..+++.++|++||++||++|.+|+ 
T Consensus       101 G~~p~~i~~g~~~a~~~a~~~L~~~-a~~~~v~g~ga~e~~l~~~l~~~a~~~~g~eq~a~~~~a~Ale~ip~~laeNa-  178 (245)
T d1a6da1         101 GVHPTVISNGYRLAVNEARKIIDEI-AEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENA-  178 (245)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHH-CEECEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHH-
T ss_pred             CCCchhhhhhHHHHHHHHHHHHHhh-ccceeecCchhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhccC-
Confidence            444433 334566777777777643 346789999999999999999987     889999999999999999999999 


Q ss_pred             cCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833         152 VPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLV  212 (216)
Q Consensus       152 v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  212 (216)
                        |.++.++..  .++  +.+.++...+|+|...+.+.|+ .+.||||+..++.++++++.
T Consensus       179 --G~D~i~iv~--~l~--~~~~~~~~~~Gv~~~~g~i~d~-~~~gV~dp~~vk~~~l~~A~  232 (245)
T d1a6da1         179 --GIDPINTLI--KLK--ADDEKGRISVGVDLDNNGVGDM-KAKGVVDPLRVKTHALESAV  232 (245)
T ss_dssp             --TSCHHHHHH--HHH--HHHHTTCTTEEEETTTTEEEEH-HHHTCEEEHHHHHHHHHHHH
T ss_pred             --CCCchhhhh--hhh--cccccCCceeeEEccCCeEeeh-HhcCccccHHHHHHHHHHHH
Confidence              779888764  233  3334567789999999999876 47899999999999888875

>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=98.99  E-value=1.9e-10  Score=91.26  Aligned_cols=68  Identities=40%  Similarity=0.593  Sum_probs=56.8

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ce-eceEEEEEECCeEEEEEeecCCCceEEEEEeC
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WL-CSSQDACLLGDEYFCYITECQNPKACTILLRG   78 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~-c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG   78 (216)
                      +.++++++-.+.+..|    ...+|||+++++++++++   |+ |+.++++++|+++|++|++|+++.+|||+|||
T Consensus        97 ~gI~~~~rv~~~dl~r----ia~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~TIllRG  168 (168)
T d1gmla_          97 ANVTAIRRVRKTDNNR----IARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG  168 (168)
T ss_dssp             TTCEEECCCCHHHHHH----HHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESSTTSCEEEEEC
T ss_pred             CCCeeeccCCHHHHHH----HHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEecCCCCEEEEEEeC
Confidence            3466666666655444    344899999999999986   76 78889999999999999999999999999998

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=8.3e-10  Score=92.54  Aligned_cols=131  Identities=12%  Similarity=0.074  Sum_probs=107.0

Q ss_pred             EEEEEeCCC-hhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHH
Q psy2833          72 CTILLRGAS-KDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNI  145 (216)
Q Consensus        72 ~TIllrG~t-~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~  145 (216)
                      .+++..|.+ ..+.+++++++++++..++....+..++||||+.+...+..++.+.     ..+.+.+.+++||+.+|+.
T Consensus       102 ~~~i~~G~~~~~i~~g~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~~~~g~~~~g~~iva~Al~~~~~~  181 (255)
T d1we3a1         102 LKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQ  181 (255)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             hhHHhcCCccchhhhhhhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhccCCChHHHHHHHHHHHHHhhhHHH
Confidence            444455654 5778999999999999999999999999999999999999999886     7888999999999999999


Q ss_pred             HhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833         146 MLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLV  212 (216)
Q Consensus       146 L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  212 (216)
                      +.+|.   |.+..+.... .   ..  .....++++|..+|...|+ -+.|+||+..+..+.++++.
T Consensus       182 ~~~na---g~~~~~~~~~-~---~~--~~~~~~~g~d~~~g~~~D~-~e~Giidp~~V~~~a~~~A~  238 (255)
T d1we3a1         182 IAENA---GYEGSVIVQQ-I---LA--ETKNPRYGFNAATGEFVDM-VEAGIVDPAKVTRSALQNAA  238 (255)
T ss_dssp             HHHHH---TSCHHHHHHH-H---HH--CCSCTTEEEETTTTEEEET-TTTTCEEEHHHHHHHHHHHH
T ss_pred             HHhhc---ccccceeeee-e---ee--cccCCceeEEeeccEEeeh-hhcCCcCchHhhHHHHHHHH
Confidence            99999   6566554331 1   11  2233458999999998876 57999999999988887764

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=98.77  E-value=4.6e-09  Score=88.52  Aligned_cols=122  Identities=16%  Similarity=0.136  Sum_probs=95.9

Q ss_pred             hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833          82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG  156 (216)
Q Consensus        82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg  156 (216)
                      .+.+.++.+.++++..++.... ..++|+||+.|++++..+..++     ..+++.++|++||+.||.++++|.   |.+
T Consensus       115 ~i~~g~~~a~~~~~~~l~~~~~-~~~~~~~g~~ei~~a~~l~~~a~~~~~~~~~a~~~~a~Al~~Ip~~la~N~---G~d  190 (258)
T d1q3qa1         115 IITKGYALAAEKAQEILDEIAI-RAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENA---GLD  190 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCE-EEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHT---TCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-hhccCCCchHHHHHHHHHHhhhcccchHHHHHHHHHHHhccchhhhhhhhc---CCc
Confidence            3445666677777777766533 4578999999999999999987     888999999999999999999999   778


Q ss_pred             hhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833         157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLV  212 (216)
Q Consensus       157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  212 (216)
                      ..|....  ++..  +..+...+++|...|.+.|+ .+.|+||+..++.+.++++.
T Consensus       191 ~i~~v~~--l~~~--~~~~~~~~gvdv~~G~~~D~-~~~Gii~p~~vk~~~l~~A~  241 (258)
T d1q3qa1         191 TVEMLVK--VISE--HKNRGLGIGIDVFEGKPADM-LEKGIIEPLRVKKQAIKSAS  241 (258)
T ss_dssp             HHHHHHH--HHHH--HHHHCTTEEEETTTTEEEET-TTTTCEEEHHHHHHHHHHHH
T ss_pred             cceehhh--hhhh--cccCCCceEEEEECCEEeEc-hHcCccccHHHHHHHHHHHH
Confidence            8887642  2222  12234468999999998877 58999999999988888764

>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=98.62  E-value=1.2e-08  Score=79.53  Aligned_cols=59  Identities=22%  Similarity=0.410  Sum_probs=49.2

Q ss_pred             CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCC
Q psy2833           7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNP   69 (216)
Q Consensus         7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~   69 (216)
                      +.++++++-.+++..|    ...+|||+++++++++++   |+|+.|+++++|+++|+||++|++|
T Consensus        91 ~gI~~v~~v~~~dl~r----la~~tGa~iv~s~~~l~~~~LG~~~~v~~~~~g~~~~~~~~gc~np  152 (152)
T d1a6db2          91 AGIYAVRRVKKSDMDK----LAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNP  152 (152)
T ss_dssp             TTCEEECSCCHHHHHH----HHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSS
T ss_pred             cCcchhccCCHHHHHH----HHHHhCCeeecchhhCCcccCcCceEEEEEEECCEEEEEEeCCCCC
Confidence            3466776666665444    444899999999999987   9999999999999999999999986

>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=98.59  E-value=1.7e-08  Score=78.73  Aligned_cols=58  Identities=17%  Similarity=0.295  Sum_probs=48.7

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCC
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNP   69 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~   69 (216)
                      .++++++-.+++..|    ...+|||+++++++++++   |+|+.|+++++|+++|++|++|++|
T Consensus        93 gI~~v~~v~~~dl~r----ia~~tGa~iv~si~~l~~~~LG~~~~~~~~~~g~~~~~~~~gc~~P  153 (153)
T d1q3qa2          93 GIMAVRRVKKSDMEK----LAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNP  153 (153)
T ss_dssp             TCEEECSCCHHHHHH----HHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSC
T ss_pred             CCceeccCCHHHHHH----HHHhhCCEEecchhhCCcccCeeeEEEEEEEECCeeEEEEeCCCCC
Confidence            467777665555444    444899999999999987   9999999999999999999999986

>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=98.40  E-value=8.5e-08  Score=74.57  Aligned_cols=56  Identities=14%  Similarity=0.258  Sum_probs=46.6

Q ss_pred             cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecC
Q psy2833           8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQ   67 (216)
Q Consensus         8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~   67 (216)
                      .++++++-.+++..|    ...+|||+++++++++++   |+|++|+++++|+++|+||+||+
T Consensus        94 gI~~v~~v~~~dl~r----ia~atGa~iv~s~~~l~~~~LG~~~~v~~~~ig~~~~~~~~GCk  152 (152)
T d1assa_          94 GIYAVRRVKKSDMEK----LAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCK  152 (152)
T ss_dssp             TCEEECSCCHHHHHH----HHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC
T ss_pred             CCccccCCCHHHHHH----HHHHhCCceeCCcccCCcccCeeeeEEEEEEECCEEEEEEecCC
Confidence            466776666555444    344899999999999986   99999999999999999999995

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=98.35  E-value=3e-07  Score=73.36  Aligned_cols=115  Identities=14%  Similarity=0.022  Sum_probs=90.1

Q ss_pred             HHHHHhchhhHHHHHHhcC-CeEEecCCchhHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHH
Q psy2833          86 ETERNLQDALHVARNIMLE-PKLVPGGGAVEMAVSHVSASKD---LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMA  161 (216)
Q Consensus        86 E~ersi~Dal~v~~~~~~~-~~vV~GGGa~E~~ls~~L~~~~---~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~  161 (216)
                      +++|.+++|+..+...++. -+.++|||.........+....   ..+.+.+.+.+||+.+++++.+|+   |.+...+.
T Consensus        52 ~i~~Gi~~A~~~v~~~L~~~a~~v~g~~~~~l~a~~al~~~~~~~~e~~g~~i~~~Al~~p~~~I~~Na---G~~~~~v~  128 (180)
T d1sjpa1          52 GLKRGIEKAVEKVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNS---GLEPGVVA  128 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCBEEETTTTTTTTTGGGGGGSCCCTHHHHHHHHHHHHTTHHHHHHHHTT---TSCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---CCCchhhh
Confidence            6788889999877666665 4789999988877666666555   888899999999999999999999   66654333


Q ss_pred             HHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833         162 VSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLV  212 (216)
Q Consensus       162 ~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  212 (216)
                      .  .++      ....++|+|..++...|| .+.|||||..|...+++++.
T Consensus       129 ~--~~~------~~~~~~G~d~~~~~~~dm-~e~GIiDP~kV~~~AL~~A~  170 (180)
T d1sjpa1         129 E--KVR------NLPAGHGLNAQTGVYEDL-LAAGVADPVKVTRSALQNAA  170 (180)
T ss_dssp             H--HHH------TSCTTEECCTTTCCCEET-TTTTCEEEHHHHHHHHHHHH
T ss_pred             h--hhh------ccccccCccccccccccH-HHcCCcCcHHHHHHHHHhHH
Confidence            2  221      234579999999999988 67899999999877776654

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=97.49  E-value=5.1e-06  Score=68.95  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCcccccc
Q psy2833         127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEVFFGS  201 (216)
Q Consensus       127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi~~~~  201 (216)
                      +.+-..++..++++.+.....+-+.+||+|++|+.+|..+++++.+.+|.+|+++++|+..    |+.+++|+| +|+.
T Consensus       103 I~~g~~~a~~~~~~~L~~~a~~v~~~~ggGa~e~~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG-~d~~  180 (243)
T d1a6db1         103 ISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAG-LDPI  180 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCEECEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHT-CCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccCCCchhHHHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccccccCC-CChh
Confidence            3344566677777777777777789999999999999999999999999999999999994    555678888 4443

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=95.53  E-value=0.00049  Score=56.43  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCcc
Q psy2833         132 ERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEV  197 (216)
Q Consensus       132 ~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi  197 (216)
                      ..+..++++.+.. +.+...+||+|+.|+.++.++.+++.+.+|.+|+++++++..    |+.+++|+|+
T Consensus       112 ~~a~~~a~~~L~~-~a~~~~v~g~ga~e~~l~~~l~~~a~~~~g~eq~a~~~~a~Ale~ip~~laeNaG~  180 (245)
T d1a6da1         112 RLAVNEARKIIDE-IAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGI  180 (245)
T ss_dssp             HHHHHHHHHHHHH-HCEECEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHh-hccceeecCchhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhccCCC
Confidence            3444455555532 334778999999999999999999999999999999999874    4334566664

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.72  E-value=0.0084  Score=48.65  Aligned_cols=60  Identities=17%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833         127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG  186 (216)
Q Consensus       127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~  186 (216)
                      ..+...+++.+|++.+.++..+...+||+|+.++..+..+..++...++.+++|++.++.
T Consensus       114 i~~g~~~a~~~al~~l~~~~~~~~~v~ggg~~~~~~~~~~~~~~~~~~g~~~~g~~iva~  173 (255)
T d1we3a1         114 LKRGIEKAVEAAVEKIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRR  173 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCBCCCEEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhhcceeccchhhhhhhhhhhHhhccCCChHHHHHHHHHHH
Confidence            677899999999999999988899999999999999999999999999999999988765

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.37  E-value=0.056  Score=43.69  Aligned_cols=115  Identities=12%  Similarity=0.007  Sum_probs=75.9

Q ss_pred             HHHHhchhhHHHHHHhcC--CeEEecCCchhHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHH
Q psy2833          87 TERNLQDALHVARNIMLE--PKLVPGGGAVEMAVSHVSASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEM  160 (216)
Q Consensus        87 ~ersi~Dal~v~~~~~~~--~~vV~GGGa~E~~ls~~L~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~  160 (216)
                      +.|.++.+...+...++.  ..+++|||..-...+..|....    -.+.....+.+|+....+.+.+|.   |.+....
T Consensus       115 i~~g~~~a~~~v~~~l~~~a~~i~~~g~~al~~~~~~l~~~~~~~~d~~~G~~iv~~Al~~p~~~i~~na---G~dg~~v  191 (252)
T d1ioka1         115 LKRGIDVATAKVVEAIKSAARGIVVGGGVALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENA---GVDGAVV  191 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCEEETTTHHHHHHGGGGGSCCCSSHHHHHHHHHHHHHTTHHHHHHHHHH---TSCHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhcc---CCCcceE
Confidence            333344444444444333  4689999988877776665543    456678999999999999999998   4454433


Q ss_pred             HHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833         161 AVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLV  212 (216)
Q Consensus       161 ~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~  212 (216)
                      .-      .... .....+++|..+++..++ -+.|+.|+..+...+++.++
T Consensus       192 v~------~~~~-~~~~~~g~~~~~~~~g~~-~~~GiidP~kVt~~al~~A~  235 (252)
T d1ioka1         192 AG------KVRE-SSDKAFGFNAQTEEYGDM-FKFGVIDPAKVVRTALEDAA  235 (252)
T ss_dssp             HH------HHHS-CCSTTEEEETTTTEEEEH-HHHTCEEEHHHHHHHHHHHH
T ss_pred             EE------eecc-cCcCCEEEEceeeeEeee-ecccccCcHHHHHHHHHHHH
Confidence            21      1111 223478999998877665 57899999988766666554

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=86.15  E-value=0.023  Score=46.30  Aligned_cols=67  Identities=19%  Similarity=0.293  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCc---ccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCcc
Q psy2833         131 TERNLQDALHVARNIMLEPK---LVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEV  197 (216)
Q Consensus       131 ~~ra~adAL~vIp~~L~~N~---~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi  197 (216)
                      ..+.+..|++.+...|.+.+   .+||+|+.|+..+..+.+++....+.++++++.++..    |..+++|+|+
T Consensus       116 i~~g~~~a~~~~~~~l~~~~~~~~~~~~g~~ei~~a~~l~~~a~~~~~~~~~a~~~~a~Al~~Ip~~la~N~G~  189 (258)
T d1q3qa1         116 ITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGL  189 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCEEEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCchHHHHHHHHHHhhhcccchHHHHHHHHHHHhccchhhhhhhhcCC
Confidence            34445555555555554443   5789999999999999999999999999999998874    4445566664