Psyllid ID: psy2834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MELDDIVSGSKKKKDENQNQAAQPTEEQYPASLVILEGKTAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAAQPTEESMRE
Secondary Structure (PSIPRED)
cccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEEEccccEEEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccccccccccccHcccc
Coil and Loop (DISEMBL)
melddivsgskkkkdenqnqaaqpteeqypASLVILEGktaagkytGKSMIEIARTqdeevgdgettfgingetgdlvdmktlgiwePLTVKLQVYKTAVETAILLLRIDDivsgskkkkdenqnqaaqpteesmre
Flexible Loop (DISEMBL)
melddivsgskkkkdenqnqaaqpteeqypasLVILEGKTAAGKYTGKSMIEIArtqdeevgdgettfgingetgdlvDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDivsgskkkkdenqnqaaqpteesmre
Low Complexity Region (SEG)
MELDDIVSGSKKKKDENQNQAAQPTEEQYPASLVILEGKTAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAAQPTEESMRE
Disordered region (IsUnstruct)
********************************LVILEGKTAAGKYTGKSMIEIA********DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV************************
Disordered Region (DISOPRED)
****DIVSGSKKKKDENQNQAAQPTEEQYPASLVILEGKTAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRID***************************
Disordered Region (DISEMBL)
**************************EQYPASLVILEGKTAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSG**********************
Disordered Region (DISPRO)
*****IVSGSKKK*********QPTEEQYPASLVILEGKTAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGS*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELDDIVSGSKKKKDENQNQAAQPTEEQYPASLVILEGKTAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAAQPTEESMRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
P80318	545	T-complex protein 1 subun	yes	N/A	0.386	0.097	0.75	5e-22
Q3T0K2	545	T-complex protein 1 subun	yes	N/A	0.386	0.097	0.75	5e-22
Q5NVF9	545	T-complex protein 1 subun	yes	N/A	0.386	0.097	0.75	5e-22
P49368	545	T-complex protein 1 subun	no	N/A	0.386	0.097	0.75	5e-22
Q6P502	545	T-complex protein 1 subun	yes	N/A	0.386	0.097	0.75	5e-22
Q4R963	545	T-complex protein 1 subun	N/A	N/A	0.386	0.097	0.734	2e-21
P48605	544	T-complex protein 1 subun	yes	N/A	0.635	0.159	0.556	7e-20
P50143	547	T-complex protein 1 subun	N/A	N/A	0.569	0.142	0.607	6e-19
O74341	528	T-complex protein 1 subun	yes	N/A	0.350	0.090	0.583	4e-15
Q9LKI7	558	T-complex protein 1 subun	N/A	N/A	0.445	0.109	0.593	5e-15

>sp|P80318|TCPG_MOUSE T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
           T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct: 477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQ 536

Query: 127 AAQP 130
              P
Sbjct: 537 TGAP 540

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.
Mus musculus (taxid: 10090)

>sp|Q3T0K2|TCPG_BOVIN T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=1 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
           T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct: 477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 536

Query: 127 AAQP 130
              P
Sbjct: 537 GGAP 540

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.

Bos taurus (taxid: 9913)

>sp|Q5NVF9|TCPG_PONAB T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
           T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct: 477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 536

Query: 127 AAQP 130
              P
Sbjct: 537 GGAP 540

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.

Pongo abelii (taxid: 9601)

>sp|P49368|TCPG_HUMAN T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
           T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct: 477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 536

Query: 127 AAQP 130
              P
Sbjct: 537 GGAP 540

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.

Homo sapiens (taxid: 9606)

>sp|Q6P502|TCPG_RAT T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
           T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct: 477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQ 536

Query: 127 AAQP 130
              P
Sbjct: 537 TGAP 540

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.

Rattus norvegicus (taxid: 10116)

>sp|Q4R963|TCPG_MACFA T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 52/64 (81%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
           T+G+NGETG LVD+K LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct: 477 TWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 536

Query: 127 AAQP 130
              P
Sbjct: 537 GGAP 540

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.

Macaca fascicularis (taxid: 9541)

>sp|P48605|TCPG_DROME T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 42  AGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVE 101
            G  T +++  +        GDG   +GI+GE+G++VDM    IWEPL VKLQ YKTAVE
Sbjct: 451 CGANTIRALTALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVE 510

Query: 102 TAILLLRIDDIVSGSKKK-KDENQNQAA 128
           TAILLLRIDDIVSGSKK+  +E  N AA
Sbjct: 511 TAILLLRIDDIVSGSKKRGGNEPTNPAA 538

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Drosophila melanogaster (taxid: 7227)

>sp|P50143|TCPG_XENLA T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 58/79 (73%), Gaps = 1/79 (1%)

Query: 46  TGKSMIEIART-QDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAI 104
            G S I I  + + +   +G  T+G++GE G L DMK LGIWEPL VKLQ YKTAVETAI
Sbjct: 454 CGASTIRILTSLRAKHTQEGCQTWGVDGEAGVLADMKELGIWEPLAVKLQTYKTAVETAI 513

Query: 105 LLLRIDDIVSGSKKKKDEN 123
           LLLRIDDIVSG KKK +++
Sbjct: 514 LLLRIDDIVSGHKKKGEDH 532

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin. Plays a role in the assembly of the von Hippel-Lindau ubiquitination complex.

Xenopus laevis (taxid: 8355)

>sp|O74341|TCPG_SCHPO T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct3 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query: 62  GDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKD 121
            +G+ +FGI+GETG +VDM   G+WEP  VKLQ  KTA+E+A LLLR+DDIVSG +K  +
Sbjct: 469 AEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRKHSE 528

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9LKI7|TCPG_THAWE T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 3/64 (4%)

Query: 59  EEVGDG---ETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSG 115
           E  G+G   +  +GI+G TG LVDM+  G+WEP +VK+Q  KTAVE+A ++LRIDDIVSG
Sbjct: 493 ETSGNGTFPKCNWGIDGTTGKLVDMEEFGVWEPFSVKVQTIKTAVESACMILRIDDIVSG 552

Query: 116 SKKK 119
           SKKK
Sbjct: 553 SKKK 556

Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.

Thalassiosira weissflogii (taxid: 67004)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
322800429	550	hypothetical protein SINV_09122 [Solenop	0.525	0.130	0.780	5e-23
332020672	550	T-complex protein 1 subunit gamma [Acrom	0.525	0.130	0.767	7e-23
307185868	549	T-complex protein 1 subunit gamma [Campo	0.525	0.131	0.767	1e-22
307204854	550	T-complex protein 1 subunit gamma [Harpe	0.510	0.127	0.773	1e-22
193618005	551	PREDICTED: t-complex protein 1 subunit g	0.540	0.134	0.693	8e-22
340714939	514	PREDICTED: t-complex protein 1 subunit g	0.518	0.138	0.75	1e-21
340714937	550	PREDICTED: t-complex protein 1 subunit g	0.518	0.129	0.75	1e-21
350402034	550	PREDICTED: T-complex protein 1 subunit g	0.518	0.129	0.75	1e-21
383854408	550	PREDICTED: T-complex protein 1 subunit g	0.518	0.129	0.75	3e-21
380011241	511	PREDICTED: T-complex protein 1 subunit g	0.518	0.138	0.736	7e-21

>gi|322800429|gb|EFZ21433.1| hypothetical protein SINV_09122 [Solenopsis invicta]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 64/73 (87%), Gaps = 1/73 (1%)

Query: 66  TTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN 125
           TT+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSGSKKKK+EN  
Sbjct: 478 TTWGIDGETGKLVDMKERGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGSKKKKNENDT 537

Query: 126 -QAAQPTEESMRE 137
            Q +Q TEESM+E
Sbjct: 538 AQPSQVTEESMKE 550

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020672|gb|EGI61078.1| T-complex protein 1 subunit gamma [Acromyrmex echinatior]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 64/73 (87%), Gaps = 1/73 (1%)

Query: 66  TTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN 125
           TT+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSGSKKKK+EN+ 
Sbjct: 478 TTWGIDGETGKLVDMKERGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGSKKKKNENET 537

Query: 126 -QAAQPTEESMRE 137
            Q +Q TEE M+E
Sbjct: 538 GQPSQVTEECMKE 550

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185868|gb|EFN71709.1| T-complex protein 1 subunit gamma [Camponotus floridanus]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 64/73 (87%), Gaps = 1/73 (1%)

Query: 66  TTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN 125
           TT+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSG KKKK+EN+ 
Sbjct: 477 TTWGIDGETGKLVDMKEYGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGLKKKKNENET 536

Query: 126 -QAAQPTEESMRE 137
            Q +Q TEESM+E
Sbjct: 537 AQPSQVTEESMKE 549

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204854|gb|EFN83412.1| T-complex protein 1 subunit gamma [Harpegnathos saltator]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 64/75 (85%), Gaps = 5/75 (6%)

Query: 66  TTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN 125
           TT+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSGSKKKK  N N
Sbjct: 478 TTWGIDGETGKLVDMKERGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGSKKKK--NDN 535

Query: 126 QAAQP---TEESMRE 137
           + AQP   TEESM+E
Sbjct: 536 ETAQPSSVTEESMKE 550

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193618005|ref|XP_001948977.1| PREDICTED: t-complex protein 1 subunit gamma-like [Acyrthosiphon pisum]

 Score =  108 bits (269), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 64/75 (85%), Gaps = 1/75 (1%)

Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDEN 123
           G  ++GINGETG++ DMK L +WEP+ VK QVYKTA+ETAILL+RIDDIVSG+KKK D+ 
Sbjct: 477 GNASWGINGETGEMADMKDLKVWEPIVVKSQVYKTAIETAILLVRIDDIVSGTKKKGDDG 536

Query: 124 QNQA-AQPTEESMRE 137
           Q +A AQPTEESM+E
Sbjct: 537 QPKASAQPTEESMKE 551

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714939|ref|XP_003395979.1| PREDICTED: t-complex protein 1 subunit gamma-like isoform 2 [Bombus terrestris]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%), Gaps = 1/72 (1%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ-N 125
           T+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSGSKKKK +N+  
Sbjct: 443 TWGIDGETGQLVDMKERGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGSKKKKSDNEPG 502

Query: 126 QAAQPTEESMRE 137
           Q AQ +EESM++
Sbjct: 503 QPAQVSEESMKD 514

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714937|ref|XP_003395978.1| PREDICTED: t-complex protein 1 subunit gamma-like isoform 1 [Bombus terrestris]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%), Gaps = 1/72 (1%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ-N 125
           T+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSGSKKKK +N+  
Sbjct: 479 TWGIDGETGQLVDMKERGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGSKKKKSDNEPG 538

Query: 126 QAAQPTEESMRE 137
           Q AQ +EESM++
Sbjct: 539 QPAQVSEESMKD 550

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402034|ref|XP_003486345.1| PREDICTED: T-complex protein 1 subunit gamma-like [Bombus impatiens]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%), Gaps = 1/72 (1%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ-N 125
           T+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSGSKKKK +N+  
Sbjct: 479 TWGIDGETGQLVDMKERGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGSKKKKSDNEPG 538

Query: 126 QAAQPTEESMRE 137
           Q AQ +EESM++
Sbjct: 539 QPAQVSEESMKD 550

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854408|ref|XP_003702713.1| PREDICTED: T-complex protein 1 subunit gamma-like [Megachile rotundata]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 62/72 (86%), Gaps = 1/72 (1%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ-N 125
           T+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSGSKKKK +N+  
Sbjct: 479 TWGIDGETGQLVDMKERGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGSKKKKADNEPT 538

Query: 126 QAAQPTEESMRE 137
             AQ +EESM+E
Sbjct: 539 PPAQVSEESMKE 550

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011241|ref|XP_003689719.1| PREDICTED: T-complex protein 1 subunit gamma-like isoform 2 [Apis florea]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 62/72 (86%), Gaps = 1/72 (1%)

Query: 67  TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ-N 125
           T+GI+GETG LVDMK  GIWEPL+VKLQ YKTA+ETAILLLRIDDIVSGSKKKK +N+  
Sbjct: 440 TWGIDGETGQLVDMKEHGIWEPLSVKLQTYKTAIETAILLLRIDDIVSGSKKKKADNEPT 499

Query: 126 QAAQPTEESMRE 137
             AQ +EESM++
Sbjct: 500 PPAQVSEESMKD 511

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
RGD|735038	545	Cct3 "chaperonin containing Tc	0.467	0.117	0.75	1.8e-23
MGI|MGI:104708	545	Cct3 "chaperonin containing Tc	0.467	0.117	0.75	2.2e-23
UNIPROTKB|B4DUR8	500	CCT3 "cDNA, FLJ78822, highly s	0.467	0.128	0.75	9.7e-22
UNIPROTKB|Q3T0K2	545	CCT3 "T-complex protein 1 subu	0.467	0.117	0.75	1.6e-21
UNIPROTKB|P49368	545	CCT3 "T-complex protein 1 subu	0.467	0.117	0.75	1.6e-21
UNIPROTKB|F1RP17	547	CCT3 "T-complex protein 1 subu	0.467	0.117	0.75	1.6e-21
UNIPROTKB|E2RB79	549	CCT3 "Uncharacterized protein"	0.467	0.116	0.75	1.6e-21
ZFIN|ZDB-GENE-020419-5	543	cct3 "chaperonin containing TC	0.627	0.158	0.579	1.8e-19
FB|FBgn0015019	544	Cctgamma "Cctgamma" [Drosophil	0.627	0.158	0.563	2.2e-18
SGD|S000003551	534	CCT3 "Subunit of the cytosolic	0.416	0.106	0.561	3.6e-18

RGD|735038 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query:    67 TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
             T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct:   477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQ 536

Query:   127 AAQP 130
                P
Sbjct:   537 TGAP 540

GO:0002199 "zona pellucida receptor complex" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005832 "chaperonin-containing T-complex" evidence=ISO

GO:0005874 "microtubule" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0007339 "binding of sperm to zona pellucida" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0097223 "sperm part" evidence=ISO

MGI|MGI:104708 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 2.2e-23, Sum P(3) = 2.2e-23
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query:    67 TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
             T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct:   477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQNRQ 536

Query:   127 AAQP 130
                P
Sbjct:   537 TGAP 540

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002199 "zona pellucida receptor complex" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IDA

GO:0005874 "microtubule" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0007339 "binding of sperm to zona pellucida" evidence=IDA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0097223 "sperm part" evidence=IDA

UNIPROTKB|B4DUR8 CCT3 "cDNA, FLJ78822, highly similar to T-complex protein 1 subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query:    67 TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
             T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct:   432 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 491

Query:   127 AAQP 130
                P
Sbjct:   492 GGAP 495

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q3T0K2 CCT3 "T-complex protein 1 subunit gamma" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query:    67 TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
             T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct:   477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 536

Query:   127 AAQP 130
                P
Sbjct:   537 GGAP 540

GO:0005886 "plasma membrane" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P49368 CCT3 "T-complex protein 1 subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query:    67 TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
             T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct:   477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 536

Query:   127 AAQP 130
                P
Sbjct:   537 GGAP 540

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005874 "microtubule" evidence=IDA

GO:0005856 "cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1RP17 CCT3 "T-complex protein 1 subunit gamma" [Sus scrofa (taxid:9823)]

 Score = 248 (92.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query:    67 TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
             T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct:   479 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 538

Query:   127 AAQP 130
                P
Sbjct:   539 GGAP 542

GO:0005886 "plasma membrane" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005832 "chaperonin-containing T-complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E2RB79 CCT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 48/64 (75%), Positives = 52/64 (81%)

Query:    67 TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ 126
             T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG KKK D+   Q
Sbjct:   477 TWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQ 536

Query:   127 AAQP 130
                P
Sbjct:   537 GGTP 540

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-020419-5 cct3 "chaperonin containing TCP1, subunit 3 (gamma)" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 51/88 (57%), Positives = 62/88 (70%)

Query:    47 GKSMIEIART-QDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
             G S I +  + + +   +G +++G+NGETG L DM+ LGIWEPL VK Q YKTAVETAIL
Sbjct:   455 GASAIRVLTSLRAKHTQEGNSSWGVNGETGTLADMEQLGIWEPLAVKAQTYKTAVETAIL 514

Query:   106 LLRIDDIVSGSKKKKDENQNQAAQPTEE 133
             LLRIDDIVSG KKK D  Q   A P E+
Sbjct:   515 LLRIDDIVSGHKKKGDGEQTGGA-PMED 541

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0046671 "negative regulation of retinal cell programmed cell death" evidence=IMP

GO:0048048 "embryonic eye morphogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0015019 Cctgamma "Cctgamma" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 49/87 (56%), Positives = 60/87 (68%)

Query:    43 GKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVET 102
             G  T +++  +        GDG   +GI+GE+G++VDM    IWEPL VKLQ YKTAVET
Sbjct:   452 GANTIRALTALRAKHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVET 511

Query:   103 AILLLRIDDIVSGSKKKK-DENQNQAA 128
             AILLLRIDDIVSGSKK+  +E  N AA
Sbjct:   512 AILLLRIDDIVSGSKKRGGNEPTNPAA 538

GO:0006457 "protein folding" evidence=ISS;NAS

GO:0005832 "chaperonin-containing T-complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS;NAS

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0060439 "trachea morphogenesis" evidence=IMP

GO:0007430 "terminal branching, open tracheal system" evidence=IMP

SGD|S000003551 CCT3 "Subunit of the cytosolic chaperonin Cct ring complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 166 (63.5 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:    64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKK 120
             G  T GI+G+ G +VDM + GIWEP  +K Q  KTA+E+A LLLR+DDIVSG +K++
Sbjct:   478 GNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQE 534

GO:0005832 "chaperonin-containing T-complex" evidence=IDA;IPI

GO:0006457 "protein folding" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0044267 "cellular protein metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48605	TCPG_DROME	No assigned EC number	0.5568	0.6350	0.1599	yes	N/A
P39077	TCPG_YEAST	No assigned EC number	0.5714	0.4087	0.1048	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	2e-25
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	4e-25
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	1e-14
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	5e-14
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	5e-13
TIGR02339	519	TIGR02339, thermosome_arch, thermosome, various su	2e-11
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	7e-11
PTZ00212	533	PTZ00212, PTZ00212, T-complex protein 1 subunit be	2e-10
cd03336	517	cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type	2e-10
TIGR02341	518	TIGR02341, chap_CCT_beta, T-complex protein 1, bet	1e-07
cd03337	480	cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type	4e-07
cd03338	515	cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type	1e-06
TIGR02344	525	TIGR02344, chap_CCT_gamma, T-complex protein 1, ga	3e-06
cd03340	522	cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I	5e-06
TIGR02345	523	TIGR02345, chap_CCT_eta, T-complex protein 1, eta	9e-06
cd03335	527	cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type	5e-05
TIGR02340	536	TIGR02340, chap_CCT_alpha, T-complex protein 1, al	7e-05
cd03341	472	cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type	8e-05
TIGR02342	517	TIGR02342, chap_CCT_delta, T-complex protein 1, de	6e-04
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	8e-04
cd03343	517	cd03343, cpn60, cpn60 chaperonin family	0.001
cd03342	484	cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type	0.003

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score = 99.8 bits (249), Expect = 2e-25
 Identities = 41/58 (70%), Positives = 48/58 (82%)

Query: 62  GDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
            +G  T+GI+GETG +VDMK  GIWEPL VKLQ YKTA+E+A +LLRIDDIVSG KKK
Sbjct: 468 QEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKKK 525

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score = 98.5 bits (246), Expect = 4e-25
 Identities = 37/53 (69%), Positives = 44/53 (83%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSG 115
              +T+GI+GETGD+VDMK LGIW+PL VK Q YKTA+E A +LLRIDDIVSG
Sbjct: 428 GENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVSG 480

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 68.6 bits (169), Expect = 1e-14
 Identities = 26/52 (50%), Positives = 34/52 (65%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
           +G    G + ETG++VDMK  GI +PL VK Q  K+A E A L+L IDDI+ 
Sbjct: 413 EGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
                 GI+ +TG++ DMK  GI +PL VK    K+AVE A L+L ID I+ 
Sbjct: 427 KKGNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQIIK 478

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 64.2 bits (157), Expect = 5e-13
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
           G    G++  TG++VDM   G+ EPL VK Q  K+A E A ++LRIDD+++
Sbjct: 465 GNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA 515

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 25/52 (48%), Positives = 34/52 (65%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
            G    GIN  TG++ DM  LG+ EPL VK Q  K+A E A ++LRIDD+++
Sbjct: 467 KGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs [Protein fate, Protein folding and stabilization]. Length = 519

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 63  DGETTFGINGETGD-LVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKD 121
              T +GI+  TG+   DM   GI +PL VK    K A E A LLL IDDI++   ++K 
Sbjct: 460 HATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEKK 519

Query: 122 E 122
            
Sbjct: 520 P 520

Length = 524

>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKD 121
           G  T GI+ E G + DMK LGI E   VKL    +A E A ++LR+DDI+  + ++++
Sbjct: 474 GNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQRE 531

Length = 533

>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
           +G TT G++   G + DMK LGI E   VK QV  +A E A ++LR+DDI+  + +K
Sbjct: 461 NGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPRK 517

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517

>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKK 120
           +G +T G++   G + DM+ LGI E   +K  V  +A E A +LLR+D+I+  + + +
Sbjct: 461 NGNSTMGLDMNEGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIKAAPRTR 518

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 518

>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 16/20 (80%), Positives = 19/20 (95%)

Query: 48 KSMIEIARTQDEEVGDGETT 67
          KSMIE++RTQDEEVGDG T+
Sbjct: 73 KSMIELSRTQDEEVGDGTTS 92

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 480

>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
            GE   GIN   G + ++    + +PL V       A ET  ++L+IDDIV
Sbjct: 463 QGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515

>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 16/67 (23%)

Query: 46  TGKSMIEIARTQDEEVGDGETTFGI-NGETGDLVDMKTLGIWEPL-------TVKLQVYK 97
             KSMIE++RTQDEEVGDG T+  I  GE         L + EP        T+ ++ YK
Sbjct: 71  AAKSMIELSRTQDEEVGDGTTSVIILAGE--------MLSVAEPFLEQNIHPTIIIRAYK 122

Query: 98  TAVETAI 104
            A++ A+
Sbjct: 123 KALDDAL 129

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525

>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 68  FGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
           +G++     + D     +WEP  VK+     A E A L+L +D+ +
Sbjct: 472 YGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETI 517

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522

>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
           G   +G++  T D+ D     +WEP  VK+   K A E A  +L +D+ +
Sbjct: 469 GGKWYGVDINTEDIGDNFENFVWEPALVKINALKAATEAACTILSVDETI 518

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 523

>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 54  ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
           A  Q +        +G++   G + D    G+ EP   K++  K A E AI +LRIDD++
Sbjct: 464 AAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLI 523

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527

>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 54  ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
           A  Q +        +G++   G + D K  G+ EP   K++  K A E AI +LRIDD++
Sbjct: 468 AAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLI 527

Query: 114 SGSKKKKDE 122
             + ++   
Sbjct: 528 KLNPEQSKG 536

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536

>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 63  DGETTFGINGETGD--LVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
            G  + G++ E+GD    D K  GI++ L  K    K A E A+ +LR+D I+
Sbjct: 417 KGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 472

>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
           GE T GI+   G + +M    + +PL V       A ET   +L+IDDIV
Sbjct: 465 GEKTAGISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDDIV 514

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 37.8 bits (89), Expect = 8e-04
 Identities = 12/22 (54%), Positives = 18/22 (81%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K ++E+A++QD+EVGDG TT
Sbjct: 63 AAKLLVEVAKSQDDEVGDGTTT 84

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 14/22 (63%), Positives = 18/22 (81%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K ++E+A+TQDEEVGDG TT
Sbjct: 70 AAKMLVEVAKTQDEEVGDGTTT 91

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 517

>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 59  EEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK 117
           +E  +G    G++ +TG+ +D ++ GIW+  +VK Q+  +A   A  LL +D+I+   +
Sbjct: 426 DEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAGR 484

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 484

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG0361|consensus	543		99.91
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	99.89
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	99.89
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	99.89
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	99.89
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	99.89
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	99.88
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	99.88
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	99.88
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	99.88
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	99.88
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	99.87
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	99.87
PRK12851	541	groEL chaperonin GroEL; Reviewed	99.87
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	99.87
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	99.87
PRK12850	544	groEL chaperonin GroEL; Reviewed	99.86
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	99.86
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	99.86
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	99.86
KOG0363|consensus	527		99.86
PRK12849	542	groEL chaperonin GroEL; Reviewed	99.86
PRK12852	545	groEL chaperonin GroEL; Reviewed	99.86
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	99.86
PRK00013	542	groEL chaperonin GroEL; Reviewed	99.86
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	99.85
PTZ00114	555	Heat shock protein 60; Provisional	99.84
KOG0362|consensus	537		99.84
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	99.83
CHL00093	529	groEL chaperonin GroEL	99.83
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	99.81
PRK14104	546	chaperonin GroEL; Provisional	99.81
PLN03167	600	Chaperonin-60 beta subunit; Provisional	99.81
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	99.8
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	99.8
KOG0358|consensus	534		99.79
KOG0357|consensus	400		99.79
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	99.78
KOG0364|consensus	527		99.64
KOG0359|consensus	520		99.55
KOG0360|consensus	545		99.43
KOG0356|consensus	550		98.25
KOG0361|consensus	543		93.18
KOG0364|consensus	527		93.01
KOG0358|consensus	534		92.36
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	92.34
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	92.22
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	92.17
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	91.75
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	91.68
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	91.62
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	91.52
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	91.46
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	91.39
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	91.25
PRK12850	544	groEL chaperonin GroEL; Reviewed	91.24
PRK12851	541	groEL chaperonin GroEL; Reviewed	91.24
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	91.14
PRK12849	542	groEL chaperonin GroEL; Reviewed	91.14
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	90.72
PTZ00114	555	Heat shock protein 60; Provisional	90.28
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	90.07
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	90.05
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	89.86
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	89.58
PLN03167	600	Chaperonin-60 beta subunit; Provisional	89.28
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	89.24
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	89.23
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	89.14
PRK00013	542	groEL chaperonin GroEL; Reviewed	88.96
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	88.81
PRK14104	546	chaperonin GroEL; Provisional	88.75
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	88.48
PRK12852	545	groEL chaperonin GroEL; Reviewed	88.11
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	86.37
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	85.58
CHL00093	529	groEL chaperonin GroEL	84.85

>KOG0361|consensus

Probab=99.91  E-value=5.3e-24  Score=179.99  Aligned_cols=112  Identities=21%  Similarity=0.260  Sum_probs=106.6

Q ss_pred             chhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccH
Q psy2834          13 KKDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        13 ~~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      .|=++++++++.|++|+-+.+|  |||+| |+|++|+|+|.++++++||..|+.|..||||++.++.+.|+++.+||||.
T Consensus       417 Sk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~  496 (543)
T KOG0361|consen  417 SKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPS  496 (543)
T ss_pred             HHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChH
Confidence            3668999999999999999999  99999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCC
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ  124 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~  124 (137)
                      .||++++..|+|+|++||.||+.|++++++++.+.
T Consensus       497 ~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~  531 (543)
T KOG0361|consen  497 IVKINAITAATEAACLILSVDETIKNPKSQSAPPS  531 (543)
T ss_pred             HHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCC
Confidence            99999999999999999999999999887776533

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=99.89  E-value=4.8e-23  Score=180.26  Aligned_cols=106  Identities=19%  Similarity=0.295  Sum_probs=99.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-+++++...+|++|+++++|  ||+.| ++||+|+|+|+.+++.+++..|..|..++|+|+.+|.+.||++.|||||+.
T Consensus       421 ~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~  500 (531)
T TIGR02347       421 CHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYR  500 (531)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHH
Confidence            346778888999999999999  99999 999999999999999999999988878899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKK  119 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~  119 (137)
                      +|.+++++|+++|++|||||+||+.+|..
T Consensus       501 vk~~al~~A~e~a~~iLrID~ii~~~~~~  529 (531)
T TIGR02347       501 VKKQLIQSATVIASQLLLVDEVMRAGRSM  529 (531)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence            99999999999999999999999987753

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=99.89  E-value=5.8e-23  Score=179.57  Aligned_cols=104  Identities=28%  Similarity=0.323  Sum_probs=99.3

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +.+++++..++|++++++++|  ||++| ++|++|||+|+.+++.+++..|.+++.++|+|+.+|.+.||++.|||||+.
T Consensus       421 ~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~  500 (533)
T PTZ00212        421 NAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYK  500 (533)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHH
Confidence            457788889999999999999  99999 999999999999999999999988888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      ||.++|+.|+++|++|||||++|...|
T Consensus       501 vk~~al~~A~e~a~~iL~id~ii~~~~  527 (533)
T PTZ00212        501 VKLSQLCSATEAAEMILRVDDIIRCAP  527 (533)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence            999999999999999999999999865

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=99.89  E-value=6.5e-23  Score=178.57  Aligned_cols=104  Identities=29%  Similarity=0.363  Sum_probs=99.4

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-+++++..++|++|+++++|  ||++| ++||+|||+|+.+++.+++..|.+|+.++|+|+.+|.+.||++.|||||+.
T Consensus       409 ~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~  488 (517)
T cd03336         409 KAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFK  488 (517)
T ss_pred             HHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHH
Confidence            357788889999999999999  99999 999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      ||.++++.|+++|++|||||++|..+|
T Consensus       489 vk~~~l~~A~e~a~~iL~id~ii~~~~  515 (517)
T cd03336         489 VKRQVLLSASEAAEMILRVDDIIKCAP  515 (517)
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence            999999999999999999999999876

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=99.89  E-value=6.8e-23  Score=178.72  Aligned_cols=104  Identities=26%  Similarity=0.389  Sum_probs=99.4

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -+++++...+|++++++++|  ||++| ++||+|||+|+.+++.+++..|.+|..++|+|+.+|.+.||++.|||||+.|
T Consensus       411 ~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~v  490 (519)
T TIGR02341       411 AVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKV  490 (519)
T ss_pred             HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHH
Confidence            47778888999999999999  99999 9999999999999999999999988888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKK  118 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~  118 (137)
                      |.++++.|+++|++|||||++|+++|.
T Consensus       491 k~~~l~~A~e~a~~iL~id~ii~~~~~  517 (519)
T TIGR02341       491 KRAVVSSAAEAAEVILRVDNIIKAAPR  517 (519)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence            999999999999999999999999873

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=99.89  E-value=5.7e-23  Score=179.16  Aligned_cols=104  Identities=21%  Similarity=0.207  Sum_probs=97.6

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC--------CceeeeeccCcchhhhhh
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG--------ETTFGINGETGDLVDMKT   82 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G--------~~~~GVdl~~g~i~d~~e   82 (137)
                      .-+++++...+|++++++++|  ||+.| ++||+|+|+|+.+++.+++..|..|        ..++|+|+.+|.+.||++
T Consensus       413 ~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~  492 (527)
T cd03335         413 IYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLE  492 (527)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhh
Confidence            356788889999999999999  99999 9999999999999999999999876        457899999999999999


Q ss_pred             hCccccHHHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          83 LGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        83 ~gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      .|||||+.+|.++|++|+|+|++|||||++|+++|
T Consensus       493 ~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~  527 (527)
T cd03335         493 AGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP  527 (527)
T ss_pred             ccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence            99999999999999999999999999999998865

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=99.88  E-value=1.1e-22  Score=176.04  Aligned_cols=103  Identities=20%  Similarity=0.299  Sum_probs=97.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-+++++...+|++|+++++|  ||+.| ++||+|||+|+.+++.+++..|..|+.++|+|+.+|.+.||++.|||||+.
T Consensus       378 ~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~  457 (484)
T cd03342         378 AHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYS  457 (484)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHH
Confidence            356788888999999999999  99999 999999999999999999999988888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      +|.++++.|+++|++|||||+||+++
T Consensus       458 vk~~~l~~A~e~a~~iL~ID~ii~~~  483 (484)
T cd03342         458 VKRQILHSATVIASQLLLVDEIIRAG  483 (484)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence            99999999999999999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=99.88  E-value=9.3e-23  Score=177.61  Aligned_cols=101  Identities=25%  Similarity=0.294  Sum_probs=96.9

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -+++++...+|.+|+++++|  ||+.| ++|++|+|+|+.+++.+++..|..|+.++|+|+.+|.+.||++.|||||+.|
T Consensus       413 ~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~v  492 (517)
T TIGR02342       413 KLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLV  492 (517)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHH
Confidence            56778888999999999999  99999 9999999999999999999999988888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSG  115 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~  115 (137)
                      |.++++.|+++|++|||||+||.+
T Consensus       493 k~~ai~~A~e~a~~iL~iD~ii~~  516 (517)
T TIGR02342       493 TTSAVTLASETVRMILKIDDIVFT  516 (517)
T ss_pred             HHHHHHHHHHHHHHHhcccceeec
Confidence            999999999999999999999876

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=99.88  E-value=1.9e-22  Score=175.68  Aligned_cols=104  Identities=43%  Similarity=0.625  Sum_probs=98.2

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-+++++..++|.+|+++++|  ||+.| ++||+|||+|+.+++.+++..|.+| ..++|+|+.+|.+.||++.|||||+
T Consensus       416 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~  495 (525)
T TIGR02344       416 VYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPL  495 (525)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecH
Confidence            346678889999999999999  99999 9999999999999999999999877 6789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      .||.++++.|+++|++|||||++|.+.|
T Consensus       496 ~vk~~~l~~A~e~a~~iL~id~ii~~~~  523 (525)
T TIGR02344       496 AVKLQTYKTAIESACMLLRIDDIVSGVK  523 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence            9999999999999999999999998866

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=99.88  E-value=1.9e-22  Score=175.62  Aligned_cols=104  Identities=20%  Similarity=0.276  Sum_probs=98.2

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCC-ceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGE-TTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~-~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-+++++....|++++++++|  ||+.| ++|++|||+|+.+++.+++..|.+|+ .++|+|+.+|.+.||++.|||||+
T Consensus       414 ~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~  493 (522)
T cd03340         414 KYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPS  493 (522)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcH
Confidence            356778888999999999999  99999 99999999999999999999999886 789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      .||+++++.|+|+|++|||||++|++++
T Consensus       494 ~vk~~~i~~A~e~a~~iL~id~ii~~~~  521 (522)
T cd03340         494 LVKINALTAATEAACLILSVDETIKNPK  521 (522)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence            9999999999999999999999998854

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=99.88  E-value=2.4e-22  Score=175.72  Aligned_cols=112  Identities=21%  Similarity=0.246  Sum_probs=102.9

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcc--hhhhhhhCcccc
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGD--LVDMKTLGIWEP   88 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~--i~d~~e~gV~dP   88 (137)
                      +.+++++..+.|.+++++++|  ||+.| ++|++|||+|+.+++.+++..|..++.++|+|+.+|.  +.||++.|||||
T Consensus       413 ~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp  492 (531)
T TIGR02346       413 LRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDN  492 (531)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEc
Confidence            457778888999999999999  99999 9999999999999999999999877778999999998  599999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCC
Q psy2834          89 LTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN  125 (137)
Q Consensus        89 ~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~  125 (137)
                      +.||.++++.|+++|++|||||++|..+|...++.|.
T Consensus       493 ~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~  529 (531)
T TIGR02346       493 LATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ  529 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence            9999999999999999999999999998766665554

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=99.87  E-value=3.2e-22  Score=172.89  Aligned_cols=102  Identities=45%  Similarity=0.706  Sum_probs=96.6

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +.+++++..++|.+|+++++|  ||+.| ++||+|||+|+++++.+++..|.+| +.++|+|+.+|.+.||++.|||||+
T Consensus       375 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~  454 (480)
T cd03337         375 HALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPL  454 (480)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcH
Confidence            457788889999999999999  99999 9999999999999999999999887 6789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSG  115 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~  115 (137)
                      .+|.++++.|+++|++|||||++|.+
T Consensus       455 ~vk~~~l~~A~e~a~~iL~id~ii~~  480 (480)
T cd03337         455 AVKAQTYKTAIEAACMLLRIDDIVSG  480 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheecC
Confidence            99999999999999999999999853

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=99.87  E-value=7.5e-22  Score=172.58  Aligned_cols=105  Identities=21%  Similarity=0.222  Sum_probs=97.4

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC--------CceeeeeccCcchhhhhhh
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG--------ETTFGINGETGDLVDMKTL   83 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G--------~~~~GVdl~~g~i~d~~e~   83 (137)
                      -+++++..++|++++++++|  ||+.| ++||+|+|+|+.+++.+++..|..|        ..++|+|+.+|.+.||++.
T Consensus       418 ~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~  497 (536)
T TIGR02340       418 YLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEA  497 (536)
T ss_pred             HHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhc
Confidence            46677888999999999999  99999 9999999999999999999999876        3478999999999999999


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHhchhhhhcCCcCC
Q psy2834          84 GIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK  119 (137)
Q Consensus        84 gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~  119 (137)
                      |||||+.+|.++|+.|+|+|++|||||++|..+|.+
T Consensus       498 gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~  533 (536)
T TIGR02340       498 GVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ  533 (536)
T ss_pred             cceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence            999999999999999999999999999999997643

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=99.87  E-value=7.5e-22  Score=173.23  Aligned_cols=110  Identities=19%  Similarity=0.266  Sum_probs=99.3

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -+++++.. +|++|+++++|  ||++| ++||+|||+|+.+++.+++..|    .++|+|+.+|.+.||.+.|||||+.|
T Consensus       425 ~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~v  499 (541)
T PRK12851        425 ALDKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATNEYGDLYAQGVIDPVKV  499 (541)
T ss_pred             HHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCCCccchhhccCEecHHH
Confidence            46677776 99999999999  99999 9999999999999999998876    26899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcCCCCC---CCCCCCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDE---NQNQAAQ  129 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~---~~~~~~~  129 (137)
                      |.++|+.|+++|++||+||++|..+|.+.++   .|+++||
T Consensus       500 k~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~~~~  540 (541)
T PRK12851        500 VRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGGMD  540 (541)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCcccC
Confidence            9999999999999999999999998866444   5666676

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=99.87  E-value=6e-22  Score=172.11  Aligned_cols=102  Identities=25%  Similarity=0.295  Sum_probs=96.5

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +.+++++..++|.+|+++++|  ||+.| ++|++|+|+|+.+++.+++..|..|+.++|+|+.+|.+.||++.|||||+.
T Consensus       411 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  490 (515)
T cd03338         411 LQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLL  490 (515)
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHH
Confidence            356678888899999999999  99999 999999999999999999999988888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSG  115 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~  115 (137)
                      ||+++++.|+++|++|||||+||++
T Consensus       491 vk~~~l~~A~~~a~~iL~ID~ii~~  515 (515)
T cd03338         491 VSTSAITLATETVRMILKIDDIVLA  515 (515)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhcC
Confidence            9999999999999999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=99.87  E-value=9.1e-22  Score=171.58  Aligned_cols=103  Identities=25%  Similarity=0.278  Sum_probs=97.6

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +.+++++....|++++++++|  ||++| ++||+|||+|+.+++.+++..|..+..++|+|+.+|.+.||++.|||||+.
T Consensus       415 ~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~  494 (522)
T TIGR02345       415 KILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLL  494 (522)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHH
Confidence            356778888999999999999  99999 999999999999999999999988777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      ||+++++.|+++|++||+||++|+++
T Consensus       495 vk~~~l~~A~e~a~~iL~id~ii~~~  520 (522)
T TIGR02345       495 VKKNALKAAFEAACTILSIDETIMNP  520 (522)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence            99999999999999999999999874

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=99.86  E-value=9.6e-22  Score=172.67  Aligned_cols=111  Identities=22%  Similarity=0.250  Sum_probs=98.7

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -++++ ...+|++|+++++|  ||++| |+||+|||+|+.+++.+++..|    .++|+|+.+|.+.||.+.|||||+.|
T Consensus       425 ~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~v  499 (544)
T PRK12850        425 ALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTGEYGDMVEAGIIDPAKV  499 (544)
T ss_pred             HHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCCcccchhhccCcccHHH
Confidence            45556 67899999999999  99999 9999999999999999998875    36899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcCCCCC---CCCCCCCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDE---NQNQAAQP  130 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~---~~~~~~~~  130 (137)
                      |.++|++|+++|++||+||++|..+|.+.++   +|+|+|-+
T Consensus       500 k~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~  541 (544)
T PRK12850        500 TRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPGMGG  541 (544)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCCCCC
Confidence            9999999999999999999999998765333   66666643

>cd03343 cpn60 cpn60 chaperonin family

Probab=99.86  E-value=1.2e-21  Score=170.07  Aligned_cols=103  Identities=29%  Similarity=0.388  Sum_probs=97.2

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      ..+++++..++|++++++++|  ||+.| ++|++|||+|+.+++.+++..|..|..++|+|+.+|.+.||++.|||||+.
T Consensus       412 ~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  491 (517)
T cd03343         412 KRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLR  491 (517)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHH
Confidence            357788889999999999999  99999 999999999999999999999987777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      +|.++++.|+++|++||+||++|+++
T Consensus       492 vk~~~l~~A~e~a~~iL~id~ii~~~  517 (517)
T cd03343         492 VKKQAIKSATEAATMILRIDDVIAAK  517 (517)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence            99999999999999999999999763

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=99.86  E-value=1.1e-21  Score=169.18  Aligned_cols=102  Identities=25%  Similarity=0.338  Sum_probs=96.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCc--chhhhhhhCcccc
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETG--DLVDMKTLGIWEP   88 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g--~i~d~~e~gV~dP   88 (137)
                      ..+++++....+.+++++++|  ||+.| ++|++|||+|+.+++.+++..|.+++.++|+|+.+|  .+.||++.|||||
T Consensus       365 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp  444 (472)
T cd03341         365 KKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDH  444 (472)
T ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceec
Confidence            457778888899999999999  99999 999999999999999999999988888899999999  9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834          89 LTVKLQVYKTAVETAILLLRIDDIVSG  115 (137)
Q Consensus        89 ~~vK~~~i~~Ate~A~~ILrID~iI~~  115 (137)
                      +.||+++++.|+++|++|||||++|..
T Consensus       445 ~~vk~~~l~~A~e~a~~iL~id~ii~~  471 (472)
T cd03341         445 LATKKWAIKLATEAAVTVLRVDQIIMA  471 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcceeec
Confidence            999999999999999999999999875

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=99.86  E-value=1.6e-21  Score=169.80  Aligned_cols=102  Identities=30%  Similarity=0.368  Sum_probs=96.3

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-+++++..+++++++++++|  ||+.| ++|++|||+|+.+++.+++..|..+..++|+|+.+|.+.||++.|||||+.
T Consensus       415 ~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~  494 (519)
T TIGR02339       415 LRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLR  494 (519)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHH
Confidence            356778888999999999999  99999 999999999999999999999987777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSG  115 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~  115 (137)
                      ||.++++.|+++|++||+||++|++
T Consensus       495 vk~~~l~~A~e~a~~iL~id~ii~~  519 (519)
T TIGR02339       495 VKEQAIKSATEAATMILRIDDVIAA  519 (519)
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHhhC
Confidence            9999999999999999999999863

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>KOG0363|consensus

Probab=99.86  E-value=1.1e-21  Score=165.27  Aligned_cols=109  Identities=28%  Similarity=0.437  Sum_probs=105.9

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-++++|...+|++..++++|  ||..+ .+||.|+|+|..+++.+|+.+|.+|.+++|+|+.+|++.||.+.||+|++.
T Consensus       414 ~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~  493 (527)
T KOG0363|consen  414 KAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLK  493 (527)
T ss_pred             HHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHH
Confidence            678999999999999999999  99999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDE  122 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~  122 (137)
                      ||.+++.+|+|+|.+|||+|.||++.|+++.+
T Consensus       494 vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~  525 (527)
T KOG0363|consen  494 VKQAVVSSASEAAEMILRVDNIIKAAPRERER  525 (527)
T ss_pred             HHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence            99999999999999999999999999988765

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=99.86  E-value=1.9e-21  Score=170.81  Aligned_cols=104  Identities=22%  Similarity=0.288  Sum_probs=95.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|++++ .++|++|+++++|  ||++| ++||+|||+|+.+++.+++..|    .++|+|+.+|.+.||.+.|||||+.
T Consensus       423 ~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~  497 (542)
T PRK12849        423 KALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATGEYGDLIAAGIIDPVK  497 (542)
T ss_pred             HHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCCccccHHhccCccCHH
Confidence            3567778 8999999999999  99999 9999999999999999998775    4689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDE  122 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~  122 (137)
                      +|.++++.|+++|++||+||++|..+|.+...
T Consensus       498 vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~  529 (542)
T PRK12849        498 VTRSALQNAASVAGLLLTTEALVADKPEEEDP  529 (542)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC
Confidence            99999999999999999999999998865444

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=99.86  E-value=2.5e-21  Score=169.93  Aligned_cols=105  Identities=23%  Similarity=0.259  Sum_probs=96.0

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -|.+++.. +|.+|+++++|  ||++| ++||+|||+|+.+++.+++..|   +.++|+|+.+|.+.||.+.|||||+.|
T Consensus       425 ~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~v  500 (545)
T PRK12852        425 AVGRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTEEYVDMVAKGIIDPAKV  500 (545)
T ss_pred             HHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHH
Confidence            46677777 89999999999  99999 9999999999999999998877   357899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcCCCCCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDEN  123 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~  123 (137)
                      |.++++.|+++|++||+||++|..+|.++.++
T Consensus       501 k~~al~~A~e~a~~iL~id~iI~~~~~~~~~~  532 (545)
T PRK12852        501 VRTALQDAASVAGLLVTTEAMVAELPKKDAAP  532 (545)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCC
Confidence            99999999999999999999999988665543

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=99.86  E-value=1.6e-21  Score=170.14  Aligned_cols=101  Identities=23%  Similarity=0.238  Sum_probs=94.3

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-+++++..++|.+++++++|  ||++| ++|++|||+|+.+++.+++..|.++ ..++|+|+.+|.+.||++.|||||+
T Consensus       422 ~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~  501 (526)
T cd03339         422 LAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETL  501 (526)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecH
Confidence            346678889999999999999  99999 9999999999999999999999643 6679999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhc
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVS  114 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~  114 (137)
                      .||+++++.|+++|++|||||++|.
T Consensus       502 ~vk~~~l~~A~e~a~~iL~iD~ii~  526 (526)
T cd03339         502 ISKKQQILLATQVVKMILKIDDVIV  526 (526)
T ss_pred             HHHHHHHHHHHHHHHHHhhhceecC
Confidence            9999999999999999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=99.86  E-value=2.2e-21  Score=170.38  Aligned_cols=107  Identities=22%  Similarity=0.276  Sum_probs=97.5

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -++++ ..++|++|+++++|  ||++| |+||+|||+|+.+++.+++..|   ..++|+|+.+|.+.||.+.|||||+.|
T Consensus       424 ~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~v  499 (542)
T PRK00013        424 ALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKV  499 (542)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCCceeehhhccCeecHHH
Confidence            45666 78899999999999  99999 9999999999999999999888   357899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN  125 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~  125 (137)
                      |.++|+.|+++|++||+||++|..+|.+...+|+
T Consensus       500 k~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~  533 (542)
T PRK00013        500 TRSALQNAASVAGLLLTTEAVVADKPEKKAAAPP  533 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence            9999999999999999999999998866555443

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=99.85  E-value=3.6e-21  Score=168.37  Aligned_cols=101  Identities=24%  Similarity=0.260  Sum_probs=94.7

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      -+++++..++|.+|+++++|  ||++| ++|++|+|+|+.+++.+++..|..+ +.++|+|+.+|.+.||++.|||||+.
T Consensus       427 ~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~  506 (532)
T TIGR02343       427 AVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLI  506 (532)
T ss_pred             HHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHH
Confidence            45678889999999999999  99999 9999999999999999999999754 66799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSG  115 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~  115 (137)
                      ||.++++.|+|+|++|||||++|..
T Consensus       507 vk~~al~~A~e~a~~iL~id~ii~~  531 (532)
T TIGR02343       507 GKKQQIQLATQLVRMILKIDDVISP  531 (532)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhccC
Confidence            9999999999999999999999964

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PTZ00114 Heat shock protein 60; Provisional

Probab=99.84  E-value=1.7e-20  Score=165.10  Aligned_cols=111  Identities=22%  Similarity=0.286  Sum_probs=99.0

Q ss_pred             hhHHHHhh--cCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCcccc
Q psy2834          14 KDENQNQA--AQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEP   88 (137)
Q Consensus        14 ~~~~~~a~--~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP   88 (137)
                      +-+.+++.  .++|++|+++++|  ||++| ++||+|||+|+.+++.++++   .+..++|+|+.+|.+.||.+.|||||
T Consensus       436 ~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp  512 (555)
T PTZ00114        436 KLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDP  512 (555)
T ss_pred             HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeC
Confidence            34666775  6889999999999  99999 99999999999999999976   45667999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCCCC
Q psy2834          89 LTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQA  127 (137)
Q Consensus        89 ~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~~~  127 (137)
                      +.||.++|+.|+++|++||+||++|...|......+++.
T Consensus       513 ~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~~~~~~~  551 (555)
T PTZ00114        513 TKVVRSALVDAASVASLMLTTEAAIVDLPKEKKKNKNSA  551 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhCCcccccccCCC
Confidence            999999999999999999999999999887655555443

>KOG0362|consensus

Probab=99.84  E-value=5.5e-21  Score=164.62  Aligned_cols=117  Identities=24%  Similarity=0.329  Sum_probs=107.2

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCc-chhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETG-DLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g-~i~d~~e~gV~dP~   89 (137)
                      |-+.+++.+++|.+|||+++|  ||+.+ |+||+|+|++..|++.++...|..|. +.|+++... ...|+.+.||||-+
T Consensus       416 k~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~-~~g~di~~e~~~~d~~~~~i~D~~  494 (537)
T KOG0362|consen  416 KQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGK-NLGMDIEAEGGTIDVREEGIWDTL  494 (537)
T ss_pred             HHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCC-cceeeeeccccccChhhhchHHHH
Confidence            667889999999999999999  99999 99999999999999999999998444 478888776 58999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCCCCCCCCh
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAAQPTE  132 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~~~~~~~~  132 (137)
                      .+|.++|+.|+++|+++|++|+||++++++++++| ++.+||+
T Consensus       495 ~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~-~~~~~d~  536 (537)
T KOG0362|consen  495 AVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPP-GKKPDDE  536 (537)
T ss_pred             HHHHHHHHHHHhhhheeeehhheeEecccCCCCCC-CCCCCCC
Confidence            99999999999999999999999999999999999 4447775

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=99.83  E-value=1.7e-20  Score=160.84  Aligned_cols=101  Identities=35%  Similarity=0.440  Sum_probs=95.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +.+++++...++.+++++++|  ||+.| ++|++|||+|+.+++.+++..|..+..++|+|+.+|++.||.+.|||||+.
T Consensus       361 ~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~  440 (464)
T cd00309         361 KALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLK  440 (464)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHH
Confidence            457788888999999999999  99999 999999999999999999999988777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhc
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVS  114 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~  114 (137)
                      ||.++++.|+++|++||+||++|+
T Consensus       441 vk~~~l~~A~e~a~~iL~id~ii~  464 (464)
T cd00309         441 VKRQALKSATEAASLILTIDDIIV  464 (464)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhC
Confidence            999999999999999999999984

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>CHL00093 groEL chaperonin GroEL

Probab=99.83  E-value=2.2e-20  Score=163.50  Aligned_cols=100  Identities=20%  Similarity=0.261  Sum_probs=92.8

Q ss_pred             hhHHHHhh-cCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQA-AQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~-~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-|++++. ..+|++|+++++|  ||++| ++||+|||+|+.+++.+++..    ..++|+|+.+|.+.||++.|||||+
T Consensus       423 ~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~  498 (529)
T CHL00093        423 ENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPA  498 (529)
T ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcH
Confidence            34677887 7999999999999  99999 999999999999999999753    3479999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      .||.++|+.|+++|++||+||++|..+|
T Consensus       499 ~vk~~al~~A~e~a~~iL~id~ii~~~~  526 (529)
T CHL00093        499 KVTRSALQNAASIASMILTTECIIVDKK  526 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999876

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=7.6e-20  Score=160.36  Aligned_cols=103  Identities=31%  Similarity=0.396  Sum_probs=93.5

Q ss_pred             HHHHhhcCCC-hhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcch-hhhhhhCccccHH
Q psy2834          16 ENQNQAAQPT-EEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDL-VDMKTLGIWEPLT   90 (137)
Q Consensus        16 ~~~~a~~~~g-~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i-~d~~e~gV~dP~~   90 (137)
                      |++++.+.+| .+|+++++|  |||.| ++||+|||+|+++++.+|++.|.  ++++|+|+.+|++ .||.+.|||||+.
T Consensus       411 L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~~~~dm~~~GI~dP~~  488 (524)
T COG0459         411 LREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEYEDDMIEAGIIDPLK  488 (524)
T ss_pred             HHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCccccchHhccCcChHH
Confidence            4455445666 999999999  99999 99999999999999999999876  4558999999988 7799999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKK  120 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~  120 (137)
                      ||.++++.|+++|.++|+||++|.++|.+.
T Consensus       489 v~~~al~~A~e~a~llL~~d~iI~~~~~~~  518 (524)
T COG0459         489 VKRSALKNAAEAAGLLLTIDDIIAAKPEEK  518 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence            999999999999999999999999998764

>PRK14104 chaperonin GroEL; Provisional

Probab=99.81  E-value=1.4e-19  Score=159.22  Aligned_cols=106  Identities=18%  Similarity=0.249  Sum_probs=94.6

Q ss_pred             HHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHHH
Q psy2834          16 ENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVK   92 (137)
Q Consensus        16 ~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~vK   92 (137)
                      ++++ ...+|++++++++|  ||++| ++||+|+|+|+.+++.+++..|   ..++|+|+.+|.+.||.+.|||||+.||
T Consensus       426 L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk  501 (546)
T PRK14104        426 LKGI-KTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVV  501 (546)
T ss_pred             HHHh-hcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHH
Confidence            4445 34689999999999  99999 9999999999999999998653   4568999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCC
Q psy2834          93 LQVYKTAVETAILLLRIDDIVSGSKKKKDENQN  125 (137)
Q Consensus        93 ~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~  125 (137)
                      .++|+.|+++|++||+||++|...|.++..++.
T Consensus       502 ~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~~  534 (546)
T PRK14104        502 RTAIQNAASVAALLITTEAMVAELPKKGGAGPA  534 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCC
Confidence            999999999999999999999988866666554

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=99.81  E-value=2e-19  Score=159.78  Aligned_cols=112  Identities=21%  Similarity=0.214  Sum_probs=95.9

Q ss_pred             hHHHHhhcCCChhHHH-HHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          15 DENQNQAAQPTEEQYP-ASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~-i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      -+.+++..+.+.+|++ +..|  ||++| |+||+|||+|+.+++.+++..   ++.++|+|+.+|.+.||.+.|||||+.
T Consensus       479 ~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g~~~dm~~~GI~Dp~~  555 (600)
T PLN03167        479 KVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATGKYEDLMAAGIIDPTK  555 (600)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCCcCcchHhccCeecHH
Confidence            4667888889999966 7777  99999 999999999999999999743   356799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCCCCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAAQ  129 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~~~~~  129 (137)
                      ||+++|+.|+++|++||+||++|..++......++..||
T Consensus       556 Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~~~~~~~~~  594 (600)
T PLN03167        556 VVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAGNPMD  594 (600)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Confidence            999999999999999999999999976554433333343

>TIGR02348 GroEL chaperonin GroL

Probab=99.80  E-value=2.8e-19  Score=156.41  Aligned_cols=97  Identities=26%  Similarity=0.372  Sum_probs=89.1

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -+++ +...+|+++|++++|  ||++| ++||+|||+|+.+++.+++..  ++  .+|+|+.+|.+.||.+.|||||+.|
T Consensus       423 ~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~v  497 (524)
T TIGR02348       423 ALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKV  497 (524)
T ss_pred             HHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCCcccchhhccCEEcHHH
Confidence            4555 678899999999999  99999 999999999999999999865  44  3899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      |.+++++|+++|++||+||++|...
T Consensus       498 k~~al~~A~~~a~~iL~id~ii~~~  522 (524)
T TIGR02348       498 TRSALQNAASIAGLLLTTEAVVADK  522 (524)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhcC
Confidence            9999999999999999999999754

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=99.80  E-value=1.8e-19  Score=153.31  Aligned_cols=103  Identities=32%  Similarity=0.475  Sum_probs=97.7

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      .-|++++.+.++.+++++++|  ||+.| ++|++|+|+++.+++.++...|..++ ++|+|+.+|++.||.+.|||||+.
T Consensus       380 ~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~-~~g~d~~~~~i~~~~~~gi~dp~~  458 (485)
T PF00118_consen  380 KALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN-NYGIDLDTGEIVDMKEAGILDPLL  458 (485)
T ss_dssp             HHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT-TEEEETTTTEEEETTTTTCEEEHH
T ss_pred             hhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc-ccCcCccCCceeccccccchhhHH
Confidence            457888999999999999999  99999 99999999999999999999987765 789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      +|.++++.|+++|++|||||++|.++|
T Consensus       459 ~k~~~l~~A~~~a~~iL~id~iI~~~~  485 (485)
T PF00118_consen  459 VKISALKSAVEIASLILRIDEIIMAKP  485 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999875

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>KOG0358|consensus

Probab=99.79  E-value=1.2e-19  Score=153.50  Aligned_cols=101  Identities=24%  Similarity=0.266  Sum_probs=97.6

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -|..+|++..|.+.|++++|  |||+| .+||+|||++++.++.+||++|.+|+..+||++..|.+.|+.+..|..|+.|
T Consensus       430 ~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllV  509 (534)
T KOG0358|consen  430 RLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLV  509 (534)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceee
Confidence            46788999999999999999  99999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSG  115 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~  115 (137)
                      -.+++++|+|++.+||+||+|+.+
T Consensus       510 s~SaitlA~Etvr~ILKIDDIv~a  533 (534)
T KOG0358|consen  510 SISAITLATETVRSILKIDDIVNA  533 (534)
T ss_pred             eHHHHHHHHHHHHHHhhhhhhccc
Confidence            999999999999999999999865

>KOG0357|consensus

Probab=99.79  E-value=1.9e-19  Score=149.81  Aligned_cols=104  Identities=24%  Similarity=0.236  Sum_probs=96.7

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhh-CCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVG-DGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~-~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      -|.+.|..++|.|||++++|  |||.| .+||+|+|++|++.++.++..+- .++.++|||++.-+-.||++.+|+||+.
T Consensus       291 av~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~  370 (400)
T KOG0357|consen  291 AVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLI  370 (400)
T ss_pred             HhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhh
Confidence            46788999999999999999  99999 99999999999999999998875 5778899999988899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKK  118 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~  118 (137)
                      .|++.+.+||..+.|||+||+|++....
T Consensus       371 ~KkqQi~laTQ~vrMiLKiddv~~~~~~  398 (400)
T KOG0357|consen  371 GKKQQISLATQMVRMILKIDDVRKPGES  398 (400)
T ss_pred             hhHHHHHHHHHHHHHhhhccceecCCCC
Confidence            9999999999999999999999887543

>cd03344 GroEL GroEL_like type I chaperonin

Probab=99.78  E-value=4.1e-19  Score=155.30  Aligned_cols=96  Identities=25%  Similarity=0.318  Sum_probs=90.4

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-+++++. .+|++|+++++|  ||++| ++||+|||+|+.+++.++++.|.    ++|+|+.+|.+.||.+.|||||+.
T Consensus       421 ~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~  495 (520)
T cd03344         421 PALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATGEYVDMIEAGIIDPTK  495 (520)
T ss_pred             HHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCCcccchHhccCeecHH
Confidence            45677887 999999999999  99999 99999999999999999998765    689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhc
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVS  114 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~  114 (137)
                      ||.++++.|+++|++||+||.+|.
T Consensus       496 vk~~~l~~A~~~a~~iL~id~~i~  519 (520)
T cd03344         496 VVRSALQNAASVASLLLTTEALVV  519 (520)
T ss_pred             HHHHHHHHHHHHHHHHHhhheEEe
Confidence            999999999999999999998875

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>KOG0364|consensus

Probab=99.64  E-value=2.1e-16  Score=135.28  Aligned_cols=106  Identities=45%  Similarity=0.609  Sum_probs=100.3

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -|.+.++...|.+++.+.+.  |||+| |+|++|+|-+++..++.+++.|..|...+|++..+|.+.||.+.++|+|+.+
T Consensus       417 ~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~v  496 (527)
T KOG0364|consen  417 ELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAV  496 (527)
T ss_pred             HHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhh
Confidence            46778889999999999999  99999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcCCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKKKK  120 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~  120 (137)
                      |.|.+++|.++++++||||+|+...+...
T Consensus       497 K~Q~~ktavesa~~LLRIddIvsg~kk~v  525 (527)
T KOG0364|consen  497 KLQTGKTAVESACLLLRIDDIVSGKKKRV  525 (527)
T ss_pred             hhhhhhHHHHHHHHHHhhhceeeeeeecc
Confidence            99999999999999999999998876553

>KOG0359|consensus

Probab=99.55  E-value=1.5e-14  Score=123.76  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=93.9

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      ++...-.+.+|+.++++++|  ||++| |+|+.|+|+|.++.+.++..+|..+  .+|+|+.+|+.++....||||.+.|
T Consensus       413 ~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~~~~~~~gi~Dny~v  490 (520)
T KOG0359|consen  413 HLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEECDPSRKGIYDNYSV  490 (520)
T ss_pred             HHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCccchhhccccchHHH
Confidence            44555567899999999999  99999 9999999999999999999999877  3599999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKK  118 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~  118 (137)
                      |.+.+++++-.|+.+|.+|+|++++..
T Consensus       491 ~~~~l~s~~via~nlLlvDEi~rAG~~  517 (520)
T KOG0359|consen  491 KKQLLRSEAVIATNLLLVDEIIRAGMS  517 (520)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence            999999999999999999999998764

>KOG0360|consensus

Probab=99.43  E-value=3.8e-14  Score=122.30  Aligned_cols=107  Identities=22%  Similarity=0.228  Sum_probs=98.7

Q ss_pred             HHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhC--------CCceeeeeccCcchhhhhhhC
Q psy2834          16 ENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGD--------GETTFGINGETGDLVDMKTLG   84 (137)
Q Consensus        16 ~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~--------G~~~~GVdl~~g~i~d~~e~g   84 (137)
                      ++.+|.+++.+||.++..|  ||.+| ++|+-|++.|..|++.+++..|..        +-.++|+++.+|.+.++++.|
T Consensus       425 le~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g  504 (545)
T KOG0360|consen  425 LENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAG  504 (545)
T ss_pred             HHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeee
Confidence            6789999999999999999  99999 999999999999999999998852        235789999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834          85 IWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE  122 (137)
Q Consensus        85 V~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~  122 (137)
                      +++|..+|...++.|+|+|..|||||+.|.-.|..+.+
T Consensus       505 ~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~~  542 (545)
T KOG0360|consen  505 SFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQVA  542 (545)
T ss_pred             eeccceeehhhhHHHHHhhhhhcchhhhhhcCcccccc
Confidence            99999999999999999999999999999987766554

>KOG0356|consensus

Probab=98.25  E-value=2.1e-06  Score=75.66  Aligned_cols=96  Identities=21%  Similarity=0.289  Sum_probs=85.0

Q ss_pred             CCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHHHHHHHHHH
Q psy2834          23 QPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTA   99 (137)
Q Consensus        23 ~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~vK~~~i~~A   99 (137)
                      -...++.+++.+  ||..+ ++++.|||.+.-.++.++..   +   .+|++..+++..|+.+.|++||..|-..++..|
T Consensus       447 ~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~---~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a  520 (550)
T KOG0356|consen  447 NNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---D---DYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDA  520 (550)
T ss_pred             cchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---h---hhhhhhhcccHHHHHhccCCChHHHHHHhhhhh
Confidence            345677889999  99999 99999999999999999982   1   689999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhhhcCCcCCCCCCC
Q psy2834         100 VETAILLLRIDDIVSGSKKKKDENQ  124 (137)
Q Consensus       100 te~A~~ILrID~iI~~~~~~~~~~~  124 (137)
                      ...|..++..+-+|...|.+..+++
T Consensus       521 ~~vasll~tte~vvteipk~~~~~~  545 (550)
T KOG0356|consen  521 AGVASLLTTTEAVVTEIPKEEAGNP  545 (550)
T ss_pred             hHHHHHHhhheeEEEeccccccCCC
Confidence            9999999999999988887764433

>KOG0361|consensus

Probab=93.18  E-value=0.088  Score=45.94  Aligned_cols=63  Identities=27%  Similarity=0.427  Sum_probs=50.1

Q ss_pred             HHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834          41 AAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLL  107 (137)
Q Consensus        41 ~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~IL  107 (137)
                      -+.+.+++.+.++...|++++++|+|++  .+++++++...    +.|| +|.. .+.+|+.|...+..-|
T Consensus        70 divhPaaktlVdia~sQDaEVGDGTTSV--v~la~E~lk~~Kpfiedgv-~~~~-iir~~rka~~l~v~ki  136 (543)
T KOG0361|consen   70 DIVHPAAKTLVDIARSQDAEVGDGTTSV--VLLAAEFLKEAKPFIEDGV-HPQL-IIRAYRKARQLAVEKI  136 (543)
T ss_pred             hhcChhHHHHHHHHhhccccccCCceeE--eeeHHHHHHhhhhHhhcCC-CHHH-HHHHHHHHHHHHHHHH
Confidence            3456788889999999999999999875  88899887554    5788 8877 4678888887776654

>KOG0364|consensus

Probab=93.01  E-value=0.094  Score=46.16  Aligned_cols=64  Identities=39%  Similarity=0.570  Sum_probs=54.3

Q ss_pred             HHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          41 AAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        41 ~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ..|+.|+...+++...+++++++|+|++  .++.|++++..    +.++ ||.. ..+++..|.|.++..+.
T Consensus        69 ~Vahpaaksmiel~rtqdeevgdgttsv--i~lagE~L~~~~~~l~~~~-Hp~~-i~ka~~~aled~~~~~~  136 (527)
T KOG0364|consen   69 DVAHPAAKSMIELSRTQDEEVGDGTTSV--IILAGEMLNVAEPFLEEGI-HPTV-IIKAYIKALEDNIRALD  136 (527)
T ss_pred             hhcCcchhhHhhhhhcccccccCCceee--eeehHHHhhhcchhhhcCc-chHH-HHHHHHHHHHHHHHHHH
Confidence            6678899999999999999999999886  78889988765    4677 8887 58889999998888775

>KOG0358|consensus

Probab=92.36  E-value=0.2  Score=43.65  Aligned_cols=62  Identities=27%  Similarity=0.422  Sum_probs=51.6

Q ss_pred             HhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          43 GKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        43 a~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .+.++..+.++...|+.+.+||++++  .+..|.+++..    +.|| ||.. ....|+.|...+..||.
T Consensus        78 lhP~akmLvelS~aQD~eaGDGTTsV--VilaGaLL~~~~~LL~kgi-HPtv-Isdsfq~a~~~~v~il~  143 (534)
T KOG0358|consen   78 LHPAAKMLVELSAAQDSEAGDGTTSV--VILAGALLEAAEKLLQKGI-HPTV-ISDSFQSAAKKAVDILD  143 (534)
T ss_pred             hChHHHHHHHhhhhccccccCCceEE--EEehhhHHHHHHHHHhcCC-Cchh-hhHHHHHHHHHHHHHHH
Confidence            35678888999999999999999876  88889877654    5888 9987 58889999999988884

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=92.34  E-value=0.15  Score=44.53  Aligned_cols=58  Identities=43%  Similarity=0.682  Sum_probs=48.9

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLL  107 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~IL  107 (137)
                      ++..+.++...|+.+.+||++++  .++.|+++..    .+.|+ +|.. ..++|+.|.+.+..+|
T Consensus        71 ~a~ll~~~a~~q~~~~GDGTtt~--vvL~~~Ll~~a~~li~~gi-~p~~-I~~g~~~a~~~~~~~L  132 (480)
T cd03337          71 AAKSMIELSRTQDEEVGDGTTSV--IILAGEILAVAEPFLERGI-HPTV-IIKAYRKALEDALKIL  132 (480)
T ss_pred             HHHHHHHHHHhHHHHhCCCcchh--HhhHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHH
Confidence            55668889999999999999886  7788887755    46788 9998 5899999999998888

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=0.12  Score=46.02  Aligned_cols=61  Identities=36%  Similarity=0.476  Sum_probs=50.5

Q ss_pred             hccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          44 KYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        44 ~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +.+++.+.++..+++.+++||+|++  .++.++++..    .+.|+ +|.. .+..|+.|.+.+...|+
T Consensus        64 hp~akll~eva~~qd~e~GDGTTta--vVLa~all~ea~~li~~gi-~P~~-I~~G~~~A~~~~~e~l~  128 (524)
T COG0459          64 HPGAKLLVEVAKKQDDEAGDGTTTA--VVLAGALLKEAEKLIAAGI-HPTV-IKRGYRLAVEKAVEELK  128 (524)
T ss_pred             CchhHHHHHHHHHHHHHhcCchHHH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            4466778899999999999999986  7778877544    46888 9998 48899999999998884

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=92.17  E-value=0.092  Score=46.37  Aligned_cols=61  Identities=28%  Similarity=0.471  Sum_probs=50.4

Q ss_pred             hccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          44 KYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        44 ~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +.++..+.++...|+.+.+||++++  .++.|+++..    .+.|+ +|..+ .++|+.|.+.+..+|.
T Consensus        69 hP~akll~~~a~~qd~~~GDGTTtv--vvLa~~Ll~~a~~li~~gi-hp~~I-i~g~~~a~~~~~~~L~  133 (519)
T TIGR02341        69 NPAAKVLVDMSKVQDDEVGDGTTSV--TVLAAELLREAEKLVNQKI-HPQTI-ISGYRRATKAAQEALK  133 (519)
T ss_pred             ChHHHHHHHHHHHhHhhhCCchhHH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            3466678889999999999999986  7888887754    35788 99984 8999999999999883

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=91.75  E-value=0.14  Score=45.42  Aligned_cols=59  Identities=25%  Similarity=0.504  Sum_probs=49.0

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...++.+.+||+|++  .+++++++..    .+.|+ +|..+ .+.|+.|.+.+...|+
T Consensus        73 ~akll~e~a~sqd~~~GDGTTt~--vvLa~~Ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~  135 (531)
T TIGR02346        73 AAKLLVMASEMQENEIGDGTNLV--IVLAGELLDKAEELIRMGL-HPSEI-IKGYEQALKKAMEVLE  135 (531)
T ss_pred             HHHHHHHHHHHHhhhhCCChhhH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            44668888999999999999886  7888887744    46888 99985 8889999999999884

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=91.68  E-value=0.14  Score=45.17  Aligned_cols=60  Identities=30%  Similarity=0.475  Sum_probs=49.8

Q ss_pred             ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .++..+.++...|+.+.+||++++  .+++|+++...    +.|+ +|..+ .+.|+.|.+.+...|+
T Consensus        62 P~akll~~~a~~q~~~~GDGTTt~--vvLa~~ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~  125 (527)
T cd03335          62 PAAKILVELAQLQDKEVGDGTTSV--VIIAAELLKRANELVKQKI-HPTTI-ISGYRLACKEAVKYIK  125 (527)
T ss_pred             hHHHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            355778889999999999999986  77888876553    5788 99984 8999999999999984

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=91.62  E-value=0.13  Score=45.23  Aligned_cols=59  Identities=41%  Similarity=0.644  Sum_probs=49.3

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...|+.+++||++++  .++.++++...    +.|+ +|.. ..++|+.|.+.+..+|.
T Consensus        71 ~akll~~~a~~q~~~~GDGTtt~--viLa~~Ll~~a~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~  133 (525)
T TIGR02344        71 AAKSMIELSRTQDEEVGDGTTSV--IILAGEMLSVAEPFLEQNI-HPTI-IIRAYKKALDDALSVLE  133 (525)
T ss_pred             HHHHHHHHHHhhhhhccCCcchh--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            56678888999999999999886  78888877554    5788 9998 58999999999998883

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03344 GroEL GroEL_like type I chaperonin

Probab=91.52  E-value=0.11  Score=45.91  Aligned_cols=59  Identities=22%  Similarity=0.303  Sum_probs=49.2

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...|+.+++||++++  .+++|+++...    +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus        67 ~a~ll~~~a~~qd~e~GDGTTtv--viLa~~Ll~~~~~li~~gi-~p~~-I~~G~~~a~~~~~~~L~  129 (520)
T cd03344          67 GAQLVKEVASKTNDVAGDGTTTA--TVLARAIIKEGLKAVAAGA-NPMD-LKRGIEKAVEAVVEELK  129 (520)
T ss_pred             HHHHHHHHHhhhccccCCCcchH--HHHHHHHHHHHHHHHhCCC-CchH-HHHHHHHHHHHHHHHHH
Confidence            55678888999999999999886  78888886553    5788 9987 58999999999999883

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=91.46  E-value=0.15  Score=44.91  Aligned_cols=59  Identities=34%  Similarity=0.582  Sum_probs=49.0

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...++.+.+||++++  .+++++++..    .+.|+ +|..+ .+.|+.|.+.+...|+
T Consensus        72 ~a~ll~~~a~~q~~~~GDGTTt~--vvLa~~Ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~  134 (522)
T TIGR02345        72 AAKTLVDIAKSQDSEVGDGTTSV--VILAGELLKEAKPFIEEGV-HPQLI-IRCYREALMLAIEKLK  134 (522)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhH--HHHHHHHHHhHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            46678888999999999999886  7788887654    35888 99985 8899999999999884

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=91.39  E-value=0.17  Score=44.67  Aligned_cols=58  Identities=33%  Similarity=0.495  Sum_probs=48.5

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLL  107 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~IL  107 (137)
                      ++..+.++...|+.+.+||++++  .++.++++...    +.|+ +|.. ..++|+.|.+.+..+|
T Consensus        64 ~akll~~~a~~qd~~~GDGTtt~--viLa~~Ll~~a~~li~~gi-~p~~-Ii~g~~~a~~~~~~~L  125 (517)
T TIGR02342        64 AAKMLVELSKAQDIEAGDGTTSV--VILAGALLGACETLLERGI-HPTT-ISESFQIAADEAIKIL  125 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHH
Confidence            45668889999999999999886  77888876543    5788 9998 5899999999998888

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=91.25  E-value=0.2  Score=44.45  Aligned_cols=59  Identities=31%  Similarity=0.514  Sum_probs=48.9

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...|+.+.+||++++  .+++|+++...    +.|+ +|.. ..++|+.|.+.+..+|+
T Consensus        82 ~akll~~~a~~qd~~~GDGTttv--vvLa~~Ll~~a~~li~~gi-hp~~-Ii~g~~~a~~~~~~~L~  144 (532)
T TIGR02343        82 IAKLMVELSKSQDDEIGDGTTGV--VVLAGALLEQAEALLDKGI-HPIK-IAEGFEVAARVAVEHLE  144 (532)
T ss_pred             HHHHHHHHHHHHHHHhcCCcccH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            45668888999999999999986  77788876553    4688 9987 58999999999999884

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=91.24  E-value=0.14  Score=45.58  Aligned_cols=57  Identities=23%  Similarity=0.292  Sum_probs=47.2

Q ss_pred             ccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          48 KSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        48 ~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ..+.++..+|+.+++||++++  .+++++++...    +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus        72 ~ll~~~a~~qd~e~GDGTTt~--viLa~~LL~~a~~li~~Gi-hP~~-I~~G~~~a~~~~~~~L~  132 (544)
T PRK12850         72 QMVKEVASKTNDLAGDGTTTA--TVLAQAIVREGAKLVAAGM-NPMD-LKRGIDLAVAAVVDELK  132 (544)
T ss_pred             HHHHHHHhhhcchhcCCcchH--HHHHHHHHHHHHHHHHCCC-ChHH-HHHHHHHHHHHHHHHHH
Confidence            566788889999999999886  77888886553    4788 9997 58999999999999883

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=91.24  E-value=0.18  Score=44.90  Aligned_cols=58  Identities=22%  Similarity=0.266  Sum_probs=48.9

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLL  107 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~IL  107 (137)
                      ++..+.++...++.+++||++++  .++.++++...    +.|+ +|.. ..+.|+.|.+.+...|
T Consensus        70 ~akll~~~a~~qd~e~GDGTTtv--viLa~~LL~~a~~li~~Gi-hp~~-I~~G~~~a~~~~~~~L  131 (541)
T PRK12851         70 GAQMVREVASKTNDVAGDGTTTA--TVLAQAIVREGAKAVAAGA-NPMD-LKRGIDRAVAAVVEEL  131 (541)
T ss_pred             HHHHHHHHHHhhhHhhCCCccHH--HHHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHHH
Confidence            55678889999999999999886  77888877653    5677 9998 4899999999999888

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=91.14  E-value=0.14  Score=45.03  Aligned_cols=59  Identities=31%  Similarity=0.456  Sum_probs=49.4

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...|+.+.+||++++  .++.|+++...    +.|+ +|.. ..++|+.|.+.+..+|.
T Consensus        70 ~akll~~~a~~qd~~~GDGTTtv--vvLa~~Ll~~a~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~  132 (517)
T cd03336          70 AAKVLVDISKVQDDEVGDGTTSV--TVLAAELLREAEKLVAQKI-HPQT-IIEGYRMATAAAREALL  132 (517)
T ss_pred             HHHHHHHHHHHHHhHhCCChhHH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            56678889999999999999986  78888876553    5688 9998 58999999999999883

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=91.14  E-value=0.1  Score=46.44  Aligned_cols=59  Identities=25%  Similarity=0.309  Sum_probs=49.6

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...|+.+++||++++  .++.|+++...    +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus        69 ~a~ll~~~a~~qd~e~GDGTTtv--viLageLL~~a~~li~~Gi-hP~~-I~~G~~~A~~~~~~~L~  131 (542)
T PRK12849         69 GAQLVKEVASKTNDVAGDGTTTA--TVLAQALVQEGLKNVAAGA-NPMD-LKRGIDKAVEAVVEELK  131 (542)
T ss_pred             HHHHHHHHHHhcCCccCCCccHH--HHHHHHHHHHHHHHHhCCC-ChHH-HHHHHHHHHHHHHHHHH
Confidence            46778889999999999999886  78889887554    4677 9998 58999999999999983

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=90.72  E-value=0.16  Score=45.02  Aligned_cols=59  Identities=34%  Similarity=0.507  Sum_probs=49.4

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...|+.+.+||+|++  .++.|+++...    +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus        82 ~akll~~~a~~qd~~~GDGTTtv--vvLa~~Ll~~a~~li~~gi-~p~~-Ii~g~~~a~~~~~~~L~  144 (533)
T PTZ00212         82 AAKILVDISKTQDEEVGDGTTSV--VVLAGELLREAEKLLDQKI-HPQT-IIEGWRMALDVARKALE  144 (533)
T ss_pred             HHHHHHHHHHhhhhhhCCchhHH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            56678889999999999999986  78888876553    5688 9998 58999999999999883

>PTZ00114 Heat shock protein 60; Provisional

Probab=90.28  E-value=0.14  Score=45.62  Aligned_cols=59  Identities=19%  Similarity=0.300  Sum_probs=48.6

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...++.+++||+|++  .++.++++...    +.|+ +|..+ .+.|+.|.+.+...|+
T Consensus        81 ~a~ll~~~a~~qd~evGDGTTtv--vvLa~~LL~~a~~li~~Gi-hP~~I-~~G~~~A~~~~~~~L~  143 (555)
T PTZ00114         81 GAQLIRQVASKTNDKAGDGTTTA--TILARAIFREGCKAVAAGL-NPMDL-KRGIDLAVKVVLESLK  143 (555)
T ss_pred             HHHHHHHHHHhhccccCCcccHH--HHHHHHHHHHHHHHHhCCC-ChHHH-HHHHHHHHHHHHHHHH
Confidence            45667788889999999999886  77888876553    5788 99984 8999999999999994

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=90.07  E-value=0.24  Score=43.84  Aligned_cols=59  Identities=27%  Similarity=0.453  Sum_probs=49.0

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .+..+.++...++.+.+||++++  .+++++++...    +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus        67 ~akll~~~a~~qd~~~GDGTTt~--viLa~~Ll~~a~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~  129 (536)
T TIGR02340        67 AAKILVELAQLQDREVGDGTTSV--VIIAAELLKRADELIKRKV-HPTS-IISGYRLACKEAVKYIK  129 (536)
T ss_pred             HHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            45678888999999999999986  77888876553    4788 9998 48999999999999884

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=90.05  E-value=0.24  Score=43.73  Aligned_cols=59  Identities=31%  Similarity=0.544  Sum_probs=48.6

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...|+.+.+||++++  .++.++++...    +.|+ +|..+ .+.|+.|.+.+...|+
T Consensus        78 ~akll~~~a~~q~~~~GDGTtt~--viLa~~ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~  140 (526)
T cd03339          78 IAKLLVELSKSQDDEIGDGTTGV--VVLAGALLEQAEKLLDRGI-HPIRI-ADGYEQACKIAVEHLE  140 (526)
T ss_pred             HHHHHHHHHHhhhhhhcCChhhH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45678888999999999999986  77888876553    5688 99985 8899999999999883

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=89.86  E-value=0.21  Score=44.38  Aligned_cols=59  Identities=25%  Similarity=0.303  Sum_probs=48.5

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..++++...|+.+.+||++++  .++.|+++...    +.|+ +|.. ..+.|+.|.+.+..+|.
T Consensus        71 ~a~ll~~~a~~qd~~~GDGTTtv--vvLa~~Ll~~a~~li~~gi-hp~~-Ii~g~~~a~~~~~~~L~  133 (531)
T TIGR02347        71 TASMIARAATAQDDITGDGTTST--VILIGELLKQAERYILEGI-HPRI-LTEGFEIARGELLEFLD  133 (531)
T ss_pred             HHHHHHHHHHHhhhhhcCcHHHH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            45556688999999999999986  77888877554    4688 9998 58999999999999983

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02348 GroEL chaperonin GroL

Probab=89.58  E-value=0.17  Score=44.90  Aligned_cols=59  Identities=25%  Similarity=0.317  Sum_probs=48.4

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++.-+.++..+++.+++||++++  .++.++++...    +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus        68 ~akll~~~a~~qd~e~GDGTTtv--viLa~~Ll~~a~~li~~Gi-hP~~-Ii~G~~~A~~~~l~~L~  130 (524)
T TIGR02348        68 GAQLVKEVASKTNDVAGDGTTTA--TVLAQAIVKEGLKNVAAGA-NPIE-LKRGIEKAVEAAVEELK  130 (524)
T ss_pred             HHHHHHHHHHccCceeCCCcchH--HHHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            45667888889999999999886  78888877554    4677 9998 58999999999999883

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=89.28  E-value=0.31  Score=44.10  Aligned_cols=58  Identities=19%  Similarity=0.220  Sum_probs=48.1

Q ss_pred             CccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          47 GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        47 G~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +..+.++..+++.+++||+|++  .++.++++...    +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus       126 akll~~~a~~qd~evGDGTTTv--vVLa~~LL~ea~~li~~Gi-~P~~-I~~G~~~A~~~~~~~L~  187 (600)
T PLN03167        126 AKLVRQAAAKTNDLAGDGTTTS--VVLAQGLIAEGVKVVAAGA-NPVQ-ITRGIEKTAKALVKELK  187 (600)
T ss_pred             HHHHHHHHHhhhhhhCCCccHH--HHHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            5567788889999999999986  77888876553    4788 9998 58999999999999994

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=89.24  E-value=0.3  Score=43.03  Aligned_cols=59  Identities=31%  Similarity=0.580  Sum_probs=49.1

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++...++.+.+||++++  .+++++++...    +.|+ +|..+ .+.|+.|.+.+...|.
T Consensus        71 ~akll~~~a~~q~~~~GDGTtt~--viL~~~ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~  133 (522)
T cd03340          71 AAKTLVDIAKSQDAEVGDGTTSV--VVLAGEFLKEAKPFIEDGV-HPQII-IRGYRKALQLAIEKIK  133 (522)
T ss_pred             HHHHHHHHHHHhHhHhCCChhHH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            46678888999999999999986  77888877553    4788 99985 8999999999999883

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=89.23  E-value=0.3  Score=42.96  Aligned_cols=59  Identities=37%  Similarity=0.597  Sum_probs=48.6

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...++.+.+||++++  .++.++++...    +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus        71 ~a~ll~~~a~~qd~~~GDGTtt~--viL~~~ll~~~~~li~~gi-~p~~-Ii~g~~~a~~~~~~~L~  133 (519)
T TIGR02339        71 AAKMLVEVAKTQDAEVGDGTTTA--VVLAGELLEKAEDLLEQGI-HPTV-IIEGYRKAAEKALEIID  133 (519)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            56678888999999999999886  77788876553    5688 9998 58999999999998884

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=89.14  E-value=0.35  Score=42.45  Aligned_cols=59  Identities=29%  Similarity=0.469  Sum_probs=48.5

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++...++.+.+||++++  .+++++++..    .+.|+ +|.. ..++|+.|.+.+...|+
T Consensus        63 ~a~ll~~~a~~q~~~~GDGTtt~--vvLa~~ll~~~~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~  125 (515)
T cd03338          63 AAKMLVELSKAQDIEAGDGTTSV--VVLAGALLSACESLLKKGI-HPTV-ISESFQIAAKKAVEILD  125 (515)
T ss_pred             HHHHHHHHHHHHHhHhcCCcchH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            46667888999999999999886  7788887654    35788 9998 48999999999998883

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=88.96  E-value=0.23  Score=44.27  Aligned_cols=58  Identities=26%  Similarity=0.320  Sum_probs=48.4

Q ss_pred             CccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          47 GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        47 G~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +..+.++...++.+++||++++  .+++++++...    +.|+ ||.. ..+.|+.|.+.+...|.
T Consensus        70 akll~e~a~~qd~e~GDGTTtv--viLa~~LL~~a~~li~~Gi-~P~~-I~~G~~~A~~~~~~~L~  131 (542)
T PRK00013         70 AQLVKEVASKTNDVAGDGTTTA--TVLAQAIVREGLKNVAAGA-NPMD-LKRGIDKAVEAAVEELK  131 (542)
T ss_pred             HHHHHHHHHhcCcccCCccchH--HHHHHHHHHHHHHHHhcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            5667888899999999999886  78888886553    4678 9998 58999999999999983

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=88.81  E-value=0.35  Score=42.15  Aligned_cols=59  Identities=25%  Similarity=0.526  Sum_probs=48.8

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .+..+.+++..++.+.+||++++  .++++++++.    .+.|+ +|..+ .+.|+.|.+.+...|.
T Consensus        63 ~a~ll~~~a~~~~~~~GDGTTt~--vvL~~~Ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~  125 (472)
T cd03341          63 AAKLLVMASQMQEEEIGDGTNLV--VVLAGELLEKAEELLRMGL-HPSEI-IEGYEKALKKALEILE  125 (472)
T ss_pred             HHHHHHHHHHHHhhhhCCChhhH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45678888999999999999986  7788887755    46788 99986 6899999999988883

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PRK14104 chaperonin GroEL; Provisional

Probab=88.75  E-value=0.22  Score=44.47  Aligned_cols=60  Identities=23%  Similarity=0.298  Sum_probs=48.3

Q ss_pred             ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ..+..+.++..+++.+++||+|++  .++.++++...    +.|+ +|..+ .+.|..|.+.+...|+
T Consensus        69 pgakll~e~a~~qd~e~GDGTTTv--vvLa~~LL~~a~~li~~Gi-~P~~I-~~G~~~A~~~~~~~L~  132 (546)
T PRK14104         69 MGAQMVREVASKSADAAGDGTTTA--TVLAQAIVREGAKSVAAGM-NPMDL-KRGIDLAVEAVVADLV  132 (546)
T ss_pred             hHHHHHHHHHHhhcccccCcccHH--HHHHHHHHHHHHHHHHCCC-CccHH-HHHHHHHHHHHHHHHH
Confidence            344557788889999999999886  77888876553    5788 99984 8999999999999983

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=88.48  E-value=0.33  Score=42.48  Aligned_cols=59  Identities=25%  Similarity=0.337  Sum_probs=47.6

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..++++..+|+.+.+||++++  .++.++++...    +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus        67 ~a~l~~~~a~~qd~~~GDGTTt~--vvLa~~Ll~~a~~li~~gi-~P~~-I~~g~~~a~~~~~~~L~  129 (484)
T cd03342          67 TASMIARAATAQDDITGDGTTSN--VLLIGELLKQAERYIQEGV-HPRI-ITEGFELAKNKALKFLE  129 (484)
T ss_pred             HHHHHHHHHHHhhhHhCCChhhH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            44556678999999999999986  77788776443    4787 9998 58999999999999884

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=88.11  E-value=0.2  Score=44.65  Aligned_cols=60  Identities=20%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .+++.+.++..+++.+++||++++  .+++++++..    .+.|+ +|.. ..+.|+.|.+.+...|+
T Consensus        69 p~akll~e~a~~q~~e~GDGTTtv--vvLa~eLL~~a~~li~~Gi-~P~~-I~~G~~~A~~~~l~~L~  132 (545)
T PRK12852         69 MGAQMVREVASKTNDLAGDGTTTA--TVLAQAIVREGAKAVAAGM-NPMD-LKRGIDIAVAAVVKDIE  132 (545)
T ss_pred             hHHHHHHHHHhhcCceecCCcchH--HHHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            345567888889999999999886  7888887755    35788 9998 48999999999999984

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=86.37  E-value=0.57  Score=40.45  Aligned_cols=60  Identities=38%  Similarity=0.639  Sum_probs=47.9

Q ss_pred             ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .++.-+.++...++.+++||++++  .++.++++...    +.|+ +|..+ .+.|+.|.+.+...|+
T Consensus        62 p~a~ll~~~~~~~~~~~GDGTtt~--viL~~~ll~~~~~li~~gi-~p~~I-~~g~~~a~~~~~~~L~  125 (464)
T cd00309          62 PAAKLLVEVAKSQDDEVGDGTTTV--VVLAGELLKEAEKLLAAGI-HPTEI-IRGYEKAVEKALEILK  125 (464)
T ss_pred             HHHHHHHHHHHHHHhHhCCchhHH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            355667888999999999999886  77788776543    5688 99985 7799999999988874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>cd03343 cpn60 cpn60 chaperonin family

Probab=85.58  E-value=0.59  Score=41.04  Aligned_cols=59  Identities=41%  Similarity=0.588  Sum_probs=48.2

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++..+++.+.+||++++  .++.++++...    +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus        70 ~a~ll~~~a~~q~~~~GDGTtt~--viLa~~ll~~~~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~  132 (517)
T cd03343          70 AAKMLVEVAKTQDEEVGDGTTTA--VVLAGELLEKAEDLLDQNI-HPTV-IIEGYRLAAEKALELLD  132 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCChhHH--HHHHHHHHHHHHHHHHcCC-ChHH-HHHHHHHHHHHHHHHHH
Confidence            56678888999999999999986  77788776543    5688 9987 48999999999988884

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>CHL00093 groEL chaperonin GroEL

Probab=84.85  E-value=0.56  Score=41.65  Aligned_cols=55  Identities=18%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          50 MIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        50 ~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +.++..+++++.+||+|++  .++.|+++...    +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus        73 i~~~a~~~~~e~GDGTTtv--vvLa~eLL~~a~~li~~Gi-~P~~-I~~G~~~A~~~~l~~L~  131 (529)
T CHL00093         73 IRQAASKTNDVAGDGTTTA--TVLAYAIVKQGMKNVAAGA-NPIS-LKRGIEKATQYVVSQIA  131 (529)
T ss_pred             HHHHHHhcCceecCCCCHH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence            3345567777889999886  78888876553    5787 9998 58899999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
3iyg_G	515	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		3e-20
3p9d_C	590	The Crystal Structure Of Yeast Cct Reveals Intrinsi		4e-13
3ko1_A	553	Cystal Structure Of Thermosome From Acidianus Tengc		9e-08
1a6d_B	543	Thermosome From T. Acidophilum Length = 543		2e-07
3aq1_B	500	Open State Monomer Of A Group Ii Chaperonin From Me		2e-06
3rus_A	543	Crystal Structure Of Cpn-Rls In Complex With Adp Fr		2e-06
3iyf_A	521	Atomic Model Of The Lidless Mm-Cpn In The Open Stat		2e-06
3los_A	543	Atomic Model Of Mm-Cpn In The Closed State Length =		2e-06
1a6d_A	545	Thermosome From T. Acidophilum Length = 545		5e-06
3j02_A	491	Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun		6e-06
3izk_A	491	Mm-Cpn Rls Deltalid With Atp Length = 491		6e-06
3izi_A	513	Mm-Cpn Rls With Atp Length = 513		6e-06
3izn_A	491	Mm-Cpn Deltalid With Atp Length = 491		6e-06
3izh_A	513	Mm-Cpn D386a With Atp Length = 513		7e-06
1q2v_A	548	Crystal Structure Of The Chaperonin From Thermococc		8e-06
1q3s_A	548	Crystal Structure Of The Chaperonin From Thermococc		8e-06
1q3r_A	548	Crystal Structure Of The Chaperonin From Thermococc		8e-06
3iyg_B	513	Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST		2e-05
3p9d_B	527	The Crystal Structure Of Yeast Cct Reveals Intrinsi		3e-04

>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 47  GKSMIEIARTQDEEVGDGETTFGI-NGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
            KSMIEI+RTQDEEVGDG T+  I  GE   + +        P TV +  Y+ A      
Sbjct: 65  AKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHP-TVVISAYRKA------ 117
Query: 106 LLRIDDIVSGSKK 118
              +DD++S  KK
Sbjct: 118 ---LDDMISTLKK 127

>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%)
Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
           G  T GI+G+ G +VDM + GIWEP  +K Q  KTA+E+A LLLR+DDIVSG +K+
Sbjct: 534 GNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQ 589

>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 68  FGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQ- 126
           +GI+   G  VDM   G+ EP  VK+   K A E A L+LRIDD+VS  KK   E++   
Sbjct: 485 YGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGESKTPG 544
Query: 127 -AAQPTEE 133
            A +P+EE
Sbjct: 545 GANKPSEE 552

>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 41  AAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAV 100
           A  +  G   I+I      E   G  T+GIN  TG++ DM   G+ EP+ V  Q  ++A 
Sbjct: 448 ALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESAT 507
Query: 101 ETAILLLRIDDIVS 114
           E AI++LRIDD+++
Sbjct: 508 EAAIMILRIDDVIA 521

>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 50  MIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRI 109
           M+E+ R+Q E+   G    G+N  TG++VDM    + EPL +K Q    A+E  +++LRI
Sbjct: 414 MVEL-RSQHEK---GNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRI 469
Query: 110 DDIVSGSKKKKDENQNQAAQP 130
           DD+V+ SK   ++       P
Sbjct: 470 DDVVA-SKGSANQGMGPGGLP 489

>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 47  GKSMIEI-ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
           G   IEI  + +     +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +
Sbjct: 449 GLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 508
Query: 106 LLRIDDIVSGSK 117
           LLRIDD+++  K
Sbjct: 509 LLRIDDVIAAEK 520

>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 47  GKSMIEI-ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
           G   IEI  + +     +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +
Sbjct: 427 GLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 486
Query: 106 LLRIDDIVSGSK 117
           LLRIDD+++  K
Sbjct: 487 LLRIDDVIAAEK 498

>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 47  GKSMIEI-ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
           G   IEI  + +     +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +
Sbjct: 449 GLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 508
Query: 106 LLRIDDIVSGSK 117
           LLRIDD+++  K
Sbjct: 509 LLRIDDVIAAEK 520

>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK 117
           G  + G++ +   + DMK  G+ +PL VK    ++AVE A ++LRIDD+++  K
Sbjct: 470 GRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKK 523

>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 47  GKSMIEI-ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
           G   IEI  + +     +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +
Sbjct: 421 GLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 480
Query: 106 LLRIDDIVSG 115
           LLRIDD+++ 
Sbjct: 481 LLRIDDVIAA 490

>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 47  GKSMIEI-ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
           G   IEI  + +     +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +
Sbjct: 421 GLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 480
Query: 106 LLRIDDIVSG 115
           LLRIDD+++ 
Sbjct: 481 LLRIDDVIAA 490

>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 47  GKSMIEI-ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
           G   IEI  + +     +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +
Sbjct: 443 GLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 502
Query: 106 LLRIDDIVSG 115
           LLRIDD+++ 
Sbjct: 503 LLRIDDVIAA 512

>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 47  GKSMIEI-ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
           G   IEI  + +     +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +
Sbjct: 421 GLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 480
Query: 106 LLRIDDIVSG 115
           LLRIDD+++ 
Sbjct: 481 LLRIDDVIAA 490

>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 47  GKSMIEI-ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAIL 105
           G   IEI  + +     +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +
Sbjct: 443 GLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEM 502
Query: 106 LLRIDDIVSG 115
           LLRIDD+++ 
Sbjct: 503 LLRIDDVIAA 512

>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 68  FGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
            GI+   G   DM   GI EPL VK Q  K+A E AI++LRIDD+++    K
Sbjct: 477 IGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATK 528

>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 68  FGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
            GI+   G   DM   GI EPL VK Q  K+A E AI++LRIDD+++    K
Sbjct: 477 IGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATK 528

>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 68  FGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
            GI+   G   DM   GI EPL VK Q  K+A E AI++LRIDD+++    K
Sbjct: 477 IGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATK 528

>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKK 118
           +G+TT G++ + G + DM  LGI E   VK QV  +A E A ++LR+D+I+  + +
Sbjct: 458 EGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513

>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 61  VGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
           + +G +T G++   G + DM+ LGI E   +K  V  +A E A +LLR+D+I+
Sbjct: 463 IYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNII 515

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	2e-22
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	8e-06
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	4e-22
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	9e-06
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	5e-22
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	8e-06
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	6e-22
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	8e-06
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	1e-21
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	1e-05
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	1e-21
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	8e-06
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	2e-21
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	8e-06
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	2e-21
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	9e-06
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	2e-20
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	8e-06
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	3e-20
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	9e-06
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	6e-20
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	1e-05
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	9e-20
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	1e-05
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	1e-19
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	1e-05
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	2e-19
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	4e-06
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	3e-19
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	1e-05
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	4e-19
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	9e-06
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	1e-18
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	7e-06
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	2e-18
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	8e-06
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	4e-18
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	1e-05
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	9e-18
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	1e-05
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	2e-16
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	5e-05
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	5e-16
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	5e-05

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 26/72 (36%), Positives = 41/72 (56%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
            G  T+GIN  TG++ DM   G+ EP+ V  Q  ++A E AI++LRIDD+++        
Sbjct: 470 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSS 529

Query: 123 NQNQAAQPTEES 134
           N  ++   +E S
Sbjct: 530 NPPKSGSSSESS 541

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K M+E+++TQD  VGDG TT
Sbjct: 76 AAKMMVEVSKTQDSFVGDGTTT 97

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 89.5 bits (223), Expect = 4e-22
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
           +    +GI+   G  VDM   G+ EP  VK+   K A E A L+LRIDD+VS  KK   E
Sbjct: 480 ENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGE 539

Query: 123 NQNQ--AAQPTEE 133
           ++    A +P+EE
Sbjct: 540 SKTPGGANKPSEE 552

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553

 Score = 42.5 bits (101), Expect = 9e-06
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 46  TGKSMIEIARTQDEEVGDGETT 67
             K +++IA+ QDEE  DG  T
Sbjct: 85  AAKLLVQIAKGQDEETADGTKT 106

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 89.1 bits (222), Expect = 5e-22
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
            GE  +G+  ET ++ D     +WEP  VK+    +A E   L+L +D+ ++    +   
Sbjct: 474 KGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESAN 533

Query: 123 NQNQAAQPTEESM 135
                 Q      
Sbjct: 534 AGMMPPQGAGRGR 546

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 46  TGKSMIEIARTQDEEVGDGETT 67
             K++++I+R QD EVGDG T+
Sbjct: 79  AAKTLVDISRAQDAEVGDGTTS 100

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 89.2 bits (222), Expect = 6e-22
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
           +G    G+N  TG + DM   G+ EPL VK Q  ++A E+  +LLRIDD+++  K +   
Sbjct: 466 NGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAP 525

Query: 123 NQNQAAQP 130
           +       
Sbjct: 526 DMGDMGGM 533

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K +IE+A+TQ++EVGDG TT
Sbjct: 74 AAKMLIEVAKTQEKEVGDGTTT 95

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 88.3 bits (220), Expect = 1e-21
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
           +G +T G++   G + DM+ LGI E   +K  V  +A E A +LLR+D+I+    +  + 
Sbjct: 465 NGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANR 524

Query: 123 NQ 124
             
Sbjct: 525 QH 526

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K ++ I++ QD+EVGDG T+
Sbjct: 73 AAKVLVNISKVQDDEVGDGTTS 94

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 88.4 bits (220), Expect = 1e-21
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
            G  + G++ +   + DMK  G+ +PL VK    ++AVE A ++LRIDD+++  K     
Sbjct: 469 KGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPS 528

Query: 123 NQNQAAQP 130
            Q    Q 
Sbjct: 529 GQGGQGQG 536

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
          T K ++E+++ QD  VGDG TT
Sbjct: 77 TAKMIVEVSKAQDTAVGDGTTT 98

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 88.0 bits (219), Expect = 2e-21
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
            G    G+N  TG++VDM    + EPL +K Q    A+E  +++LRIDD+V+        
Sbjct: 423 KGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQG 482

Query: 123 -NQNQAAQPTEESMR 136
                     +  M 
Sbjct: 483 MGPGGLPDMPDLDMD 497

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K ++E+++TQD EVGDG TT
Sbjct: 28 AAKMIVEVSKTQDAEVGDGTTT 49

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 87.6 bits (218), Expect = 2e-21
 Identities = 26/73 (35%), Positives = 35/73 (47%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
           +     GI+   G   DM   GI EPL VK Q  K+A E AI++LRIDD+++    K + 
Sbjct: 472 NRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEG 531

Query: 123 NQNQAAQPTEESM 135
            Q          M
Sbjct: 532 GQGGGMPGGMGGM 544

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K M+E+A+TQD+E GDG TT
Sbjct: 78 AAKMMVEVAKTQDKEAGDGTTT 99

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 84.5 bits (210), Expect = 2e-20
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK 117
            G   +G++  T D+ D     +WEP  V++     A E A L++ +D+ +   +
Sbjct: 461 QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 515

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 11/22 (50%), Positives = 18/22 (81%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K++++IA++QD EVGDG T+
Sbjct: 66 AAKTLVDIAKSQDAEVGDGTTS 87

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 84.2 bits (209), Expect = 3e-20
 Identities = 16/68 (23%), Positives = 34/68 (50%)

Query: 56  TQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSG 115
             ++        +G++   G +VD    G+ EP   K++  K+A+E  + +LRID +++ 
Sbjct: 488 KPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITV 547

Query: 116 SKKKKDEN 123
             +   E+
Sbjct: 548 DPEPPKED 555

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 46  TGKSMIEIARTQDEEVGDGETT 67
            GK ++E+A+ QD E+GDG T+
Sbjct: 79  AGKILVELAQQQDREIGDGTTS 100

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 83.3 bits (207), Expect = 6e-20
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKK 118
           +G+TT G++ + G + DM  LGI E   VK QV  +A E A ++LR+D+I+  + +
Sbjct: 458 EGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K +++++R QD+EVGDG T+
Sbjct: 67 AAKVLVDMSRVQDDEVGDGTTS 88

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 83.0 bits (206), Expect = 9e-20
 Identities = 16/69 (23%), Positives = 24/69 (34%)

Query: 54  ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
               D +  D     G++   GD  D    GIW+   V       A   A  LL  D+++
Sbjct: 475 DELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534

Query: 114 SGSKKKKDE 122
              +    E
Sbjct: 535 RAGRSTLKE 543

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
          T   +   A  QDE  GDG TT
Sbjct: 72 TAVLIARAAAAQDEITGDGTTT 93

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score = 82.2 bits (204), Expect = 1e-19
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
             +  G++       DMK L + +P   K Q    A +   ++L+ID+++   K +
Sbjct: 506 KISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKDE 561

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 8/22 (36%), Positives = 17/22 (77%)

Query: 46  TGKSMIEIARTQDEEVGDGETT 67
             K +++++++QD+E+GDG T 
Sbjct: 100 IAKLLVQLSKSQDDEIGDGTTG 121

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 34/74 (45%), Positives = 47/74 (63%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G   I +      +   G  T GI+G+ G +VDM + GIWEP  +K Q  KTA+E+A LL
Sbjct: 517 GGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLL 576

Query: 107 LRIDDIVSGSKKKK 120
           LR+DDIVSG +K++
Sbjct: 577 LRVDDIVSGVRKQE 590

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 16/22 (72%), Positives = 19/22 (86%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            KSM+E++RTQDEEVGDG TT
Sbjct: 74 AAKSMLELSRTQDEEVGDGTTT 95

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 81.4 bits (202), Expect = 3e-19
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
           +GE   GI+       +     I +P+ V       A E    +LRIDDI  
Sbjct: 475 NGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAF 526

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            + ++E++  QD E GDG T+
Sbjct: 74 VARMLVEVSAAQDSEAGDGTTS 95

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 81.0 bits (201), Expect = 4e-19
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
            GE T GIN   G + ++    + +PL V +     A ET   +L+IDD+V+
Sbjct: 465 QGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 516

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            + ++E+++ QD E GDG T+
Sbjct: 66 AARMLVELSKAQDIEAGDGTTS 87

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 79.5 bits (197), Expect = 1e-18
 Identities = 43/54 (79%), Positives = 46/54 (85%)

Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK 117
              T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG K
Sbjct: 462 NCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 515

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 17/22 (77%), Positives = 19/22 (86%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            KSMIEI+RTQDEEVGDG T+
Sbjct: 64 AAKSMIEISRTQDEEVGDGTTS 85

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 54  ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
              Q           G++   G   D K  G++EP  VK++  K A E AI +LRIDD++
Sbjct: 466 NEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 525

Query: 114 S 114
            
Sbjct: 526 K 526

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K + E+A  QD+EVGDG T+
Sbjct: 65 AAKVLCELADLQDKEVGDGTTS 86

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 78.3 bits (194), Expect = 4e-18
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 64  GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
                GI+       DMK   + E L  K Q    A +   ++L+IDDI  
Sbjct: 463 VNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 513

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K M+E++++QD+E+GDG T 
Sbjct: 65 IAKLMVELSKSQDDEIGDGTTG 86

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 77.2 bits (191), Expect = 9e-18
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 63  DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
           +     G++  TG+ +     GIW+   VK Q+  +    A  +L +D+I+ 
Sbjct: 464 ESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 515

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
          T   + ++A  QD+  GDG T+
Sbjct: 65 TASLIAKVATAQDDITGDGTTS 86

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 3/80 (3%)

Query: 54  ARTQDEEVGDGETTFGIN---GETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRID 110
             T+   V       G++        + D++   I++ L  K      A E A  +L ID
Sbjct: 483 NVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSID 542

Query: 111 DIVSGSKKKKDENQNQAAQP 130
            I+   K             
Sbjct: 543 QIIMAKKAGGPRAPQGPRPG 562

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 46  TGKSMIEIARTQDEEVGDGETT 67
             K ++     Q  ++GDG   
Sbjct: 81  AVKVLVMATEQQKIDMGDGTNL 102

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score = 72.2 bits (178), Expect = 5e-16
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 63  DGETTFGIN--GETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
           +G    G++   E   + DM   G+ +    K    K A   A+ +LR+D I+ 
Sbjct: 457 EGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM 510

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 46 TGKSMIEIARTQDEEVGDGETT 67
            K ++  +  Q++EVGDG   
Sbjct: 66 AAKMIVMASHMQEQEVGDGTNF 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	99.93
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	99.92
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	99.92
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	99.92
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	99.92
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	99.92
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	99.91
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	99.91
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	99.91
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	99.91
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	99.91
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	99.91
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	99.91
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	99.91
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	99.91
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	99.9
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	99.9
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	99.9
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	99.9
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	99.89
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	99.89
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	99.89
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	99.88
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	99.86
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	99.84
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	99.83
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	93.69
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	93.67
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	93.21
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	93.07
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	93.03
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	92.98
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	92.96
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	92.55
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	92.54
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	92.42
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	92.2
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	92.09
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	91.85
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	91.77
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	91.67
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	91.59
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	91.36
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	90.79
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	90.19
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	90.19
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	89.55
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	89.32
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	87.15
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	86.39
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	85.55
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	81.95

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.93  E-value=8.9e-26  Score=195.92  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=98.6

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCC--------ceeeeeccCcchhhhhh
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGE--------TTFGINGETGDLVDMKT   82 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~--------~~~GVdl~~g~i~d~~e   82 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+|+..|..|+        .++|+|+.+|++.||.+
T Consensus       415 ~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~d~~~  494 (529)
T 3iyg_A          415 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQ  494 (529)
T ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccCceeeeeCCCCCccChhh
Confidence            467889999999999999999  99999 99999999999999999999998765        67999999999999999


Q ss_pred             hCccccHHHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          83 LGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        83 ~gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      .|||||+.||.++|++|+|+|++|||||+||+.+|
T Consensus       495 ~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~  529 (529)
T 3iyg_A          495 AGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP  529 (529)
T ss_pred             ccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence            99999999999999999999999999999998853

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=99.92  E-value=2e-27  Score=207.94  Aligned_cols=120  Identities=16%  Similarity=0.140  Sum_probs=88.4

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhC--------CCceeeeeccCcc---hhh
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGD--------GETTFGINGETGD---LVD   79 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~--------G~~~~GVdl~~g~---i~d   79 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+|+..|..        |+.++|+|+.+|+   +.|
T Consensus       432 ~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d  511 (568)
T 3p9d_H          432 SRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKD  511 (568)
T ss_dssp             HHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHH
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCceeEcccCCCcccccC
Confidence            467889999999999999999  99999 999999999999999999999875        6678999999997   999


Q ss_pred             hhhhCccccHHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCC-C-CCCCChh
Q psy2834          80 MKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN-Q-AAQPTEE  133 (137)
Q Consensus        80 ~~e~gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~-~-~~~~~~~  133 (137)
                      |.+.|||||+.||+++|++|+|+|++|||||++|.++|.+++.+|. | ..+||+|
T Consensus       512 ~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~~~~~~~~~~~~~~  567 (568)
T 3p9d_H          512 IREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGPRAPQGPRPGNWDQE  567 (568)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEECBCCC-----------------------------
T ss_pred             hHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccccCCCCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999998888663 2 3488876

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=99.92  E-value=9.2e-26  Score=196.36  Aligned_cols=121  Identities=27%  Similarity=0.369  Sum_probs=97.5

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  ||++| ++||+|||+|+++++.+++..|.+|+.++|+|+.+|++.||.+.|||||+.
T Consensus       418 ~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  497 (543)
T 1a6d_B          418 FRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIR  497 (543)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHH
T ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCCCCcccchhhcCceecHH
Confidence            457889999999999999999  99999 999999999999999999999988877899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCCCCCCCChhh
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAAQPTEES  134 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~~~~~~~~~~  134 (137)
                      ||.++|++|+++|++||+||++|...|.+++++|+.+..||+.+
T Consensus       498 vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~  541 (543)
T 1a6d_B          498 VGKQAIESATEAAIMILRIDDVIATKSSSSSSNPPKSGSSSESS  541 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHEEEEEC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCccccc
Confidence            99999999999999999999999999988888777777887643

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=99.92  E-value=8.4e-26  Score=197.24  Aligned_cols=115  Identities=29%  Similarity=0.343  Sum_probs=98.0

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCC-ceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGE-TTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~-~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|..|+ .++|+|+.+|++.||.+.|||||+
T Consensus       427 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~  506 (553)
T 3ko1_A          427 KKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPA  506 (553)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETTTTEEEESGGGSCEEET
T ss_pred             HHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEeecCCchHHHHhCccchh
Confidence            457889999999999999999  99999 99999999999999999999998876 689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCCCCC
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAA  128 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~~~~  128 (137)
                      .||+++|++|+++|++|||||++|..+|.++++.+.++.
T Consensus       507 ~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~~~~~~~  545 (553)
T 3ko1_A          507 LVKMNAIKAATEAATLVLRIDDVVSAGKKSGGESKTPGG  545 (553)
T ss_dssp             THHHHHHHHHHHHHHHHHHEEEECCC-------------
T ss_pred             hhhhhhhhhcchhheEEEehHHHHHhhhhccCCCCCCCc
Confidence            999999999999999999999999999988777555554

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.92  E-value=4.8e-25  Score=190.97  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=98.4

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+|+..|..|+.++|+|+.+|++.||.+.|||||+.
T Consensus       412 ~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  491 (517)
T 3iyg_Z          412 EALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYC  491 (517)
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEeCCCCcccchhhccCeecHH
Confidence            457889999999999999999  99998 999999999999999999999988888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      ||.++|++|+++|++|||||+||+++
T Consensus       492 vk~~al~~A~e~a~~iL~iD~ii~~~  517 (517)
T 3iyg_Z          492 VKKQLLHSCTVIATNILLVDEIMRAG  517 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999864

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=99.92  E-value=4.2e-25  Score=190.57  Aligned_cols=110  Identities=27%  Similarity=0.351  Sum_probs=92.6

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  ||++| ++||+|||+|+++++.+++..|.+|+.++|+|+.+|++.||.+.|||||+.
T Consensus       371 ~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  450 (500)
T 3aq1_B          371 LRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLR  450 (500)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTTTCEEEHH
T ss_pred             HHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhcCCCCCHH
Confidence            457889999999999999999  99999 999999999999999999999988877899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDEN  123 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~  123 (137)
                      ||.++|++|+++|++||+||++|...|.+++++
T Consensus       451 vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~~~  483 (500)
T 3aq1_B          451 IKTQAINAAMEATVMILRIDDVVASKGSANQGM  483 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCC
Confidence            999999999999999999999999988766543

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=99.91  E-value=4e-25  Score=192.81  Aligned_cols=111  Identities=22%  Similarity=0.256  Sum_probs=101.5

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|..|+.++|+|+.+|++.||.+.|||||+.
T Consensus       422 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~  501 (550)
T 3p9d_G          422 KCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPAL  501 (550)
T ss_dssp             HHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBCSSSSSBCCHHHHTCEEEHH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeeeCCCCcccchHhccCEecHH
Confidence            467889999999999999999  99999 999999999999999999999987777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ  124 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~  124 (137)
                      ||+++|++|+++|++||+||++|..+|.++.+.+
T Consensus       502 vk~~al~~A~~~a~~iL~id~ii~~~~~~~~~~~  535 (550)
T 3p9d_G          502 VKINALNSATEATNLILSVDETITNKGSESANAG  535 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEEEECCCCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhCCCcccccCC
Confidence            9999999999999999999999999887766543

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=99.91  E-value=4e-25  Score=192.45  Aligned_cols=109  Identities=28%  Similarity=0.347  Sum_probs=99.2

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhh-CCCceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVG-DGETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~-~G~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|. .|+.++|+|+.+|++.||.+.|||||+
T Consensus       413 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~  492 (543)
T 3ruv_A          413 MKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPL  492 (543)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTTTCEEEH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHcCCEecH
Confidence            457889999999999999999  99999 99999999999999999999997 777789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE  122 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~  122 (137)
                      .||+++|++|+++|++|||||++|..+|.++++
T Consensus       493 ~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~~  525 (543)
T 3ruv_A          493 RVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAP  525 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEEC------
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhheecCccCCCC
Confidence            999999999999999999999999998876553

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=99.91  E-value=9.8e-25  Score=188.81  Aligned_cols=105  Identities=27%  Similarity=0.364  Sum_probs=100.2

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|..|+.++|+|+.+|++.||.+.|||||+.
T Consensus       406 ~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  485 (513)
T 3iyg_B          406 HAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQ  485 (513)
T ss_pred             HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccchHhccCEecHH
Confidence            457889999999999999999  99999 999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKK  118 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~  118 (137)
                      ||+++|++|+++|++|||||++|.++|+
T Consensus       486 vk~~al~~A~~~a~~iL~id~ii~~~~~  513 (513)
T 3iyg_B          486 VKRQVLLSAAEAAEVILRVDNIIKAAPR  513 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999998753

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.91  E-value=1.1e-24  Score=188.65  Aligned_cols=103  Identities=20%  Similarity=0.283  Sum_probs=98.7

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|..|+.++|+|+.+|++.||.+.|||||+.
T Consensus       409 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~  488 (515)
T 3iyg_H          409 KYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAM  488 (515)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCCcccccHhccCEECHH
Confidence            457889999999999999999  99999 999999999999999999999988878899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      ||+++|++|+++|++|||||+||+++
T Consensus       489 vk~~al~~A~~~a~~iL~iD~ii~~~  514 (515)
T 3iyg_H          489 VRINALTAASEAACLIVSVDETIKNP  514 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999864

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.91  E-value=1.1e-24  Score=188.60  Aligned_cols=103  Identities=22%  Similarity=0.264  Sum_probs=98.6

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+|+..|..|+.++|+|+.+|++.||.+.|||||+.
T Consensus       413 ~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  492 (518)
T 3iyg_D          413 LRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLL  492 (518)
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCcccchhhccCEEcHH
Confidence            457889999999999999999  99999 999999999999999999999988888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      ||+++|++|+++|++|||||+||+++
T Consensus       493 vk~~al~~A~e~a~~iL~iD~ii~~~  518 (518)
T 3iyg_D          493 VSVSALTLATETVRSILKIDDVVNTR  518 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhcceEecC
Confidence            99999999999999999999999864

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=99.91  E-value=1e-24  Score=190.53  Aligned_cols=109  Identities=19%  Similarity=0.241  Sum_probs=101.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCc------------eeeeeccCcchh
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGET------------TFGINGETGDLV   78 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~------------~~GVdl~~g~i~   78 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+|+..|..|+.            ++|+|+.+|++.
T Consensus       431 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~~~~~~~~~~~~G~d~~~g~~~  510 (559)
T 3p9d_A          431 IYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIV  510 (559)
T ss_dssp             HHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHTTSCCC----CCCCCCCEEECTTSSSEE
T ss_pred             HHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhccccccccccccccccceeEECCCCcEe
Confidence            467889999999999999999  99999 999999999999999999999987765            789999999999


Q ss_pred             hhhhhCccccHHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834          79 DMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE  122 (137)
Q Consensus        79 d~~e~gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~  122 (137)
                      ||.+.|||||+.||+++|++|+++|++|||||++|.+.|.++.+
T Consensus       511 dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~~~  554 (559)
T 3p9d_A          511 DEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEPPKE  554 (559)
T ss_dssp             ESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCCCCCC
T ss_pred             ehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccccc
Confidence            99999999999999999999999999999999999998766533

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.91  E-value=1.8e-24  Score=187.22  Aligned_cols=103  Identities=50%  Similarity=0.692  Sum_probs=96.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+|+..|..+ +.++|+|+.+|++.||.+.|||||+
T Consensus       408 ~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gi~dp~  487 (515)
T 3iyg_G          408 HALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPL  487 (515)
T ss_pred             HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCcccccHHcCCEEcH
Confidence            457889999999999999999  99999 9999999999999999999999754 4578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      .||+++|++|+++|++|||||+||...
T Consensus       488 ~vk~~al~~A~e~a~~iL~iD~ii~~~  514 (515)
T 3iyg_G          488 AVKLQTYKTAVETAVLLLRIDDIVSGH  514 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeecC
Confidence            999999999999999999999999753

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=99.91  E-value=3.2e-25  Score=192.27  Aligned_cols=109  Identities=23%  Similarity=0.334  Sum_probs=99.1

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|..|+.++|+|+.+|++.||.+.|||||+.
T Consensus       413 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~  492 (527)
T 3p9d_B          413 KAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYK  492 (527)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSSTTCCCHHHHTCEEETT
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCCCCcchHhccCEEcHH
Confidence            457888999999999999999  99999 999999999999999999999988877899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDE  122 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~  122 (137)
                      ||+++|++|+++|++|||||++|..+|.++.+
T Consensus       493 vk~~al~~A~e~a~~iL~id~ii~~~~~~~~~  524 (527)
T 3p9d_B          493 LKRAVVSSASEAAEVLLRVDNIIRARPRTANR  524 (527)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhcCCcccCC
Confidence            99999999999999999999999998776544

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.91  E-value=3.6e-24  Score=185.13  Aligned_cols=103  Identities=22%  Similarity=0.282  Sum_probs=97.7

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCc--chhhhhhhCcccc
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETG--DLVDMKTLGIWEP   88 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g--~i~d~~e~gV~dP   88 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|..|+.++|+|+.+|  ++.||.+.|||||
T Consensus       405 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~~~d~~~~gI~dp  484 (512)
T 3iyg_Q          405 KQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDT  484 (512)
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCcccchHhccCeEc
Confidence            457889999999999999999  99999 999999999999999999999988888899999965  9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          89 LTVKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        89 ~~vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      +.||+++|++|+++|++|||||+||+++
T Consensus       485 ~~vk~~al~~A~~~a~~iL~id~ii~~k  512 (512)
T 3iyg_Q          485 YLGKYWAIKLATNAAVTVLRVDQIIMAK  512 (512)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhHheecC
Confidence            9999999999999999999999999864

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=99.90  E-value=1e-24  Score=189.90  Aligned_cols=109  Identities=18%  Similarity=0.228  Sum_probs=100.2

Q ss_pred             hhHHH---HhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhC-----CCceeeeeccCcchhhhhh
Q psy2834          14 KDENQ---NQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGD-----GETTFGINGETGDLVDMKT   82 (137)
Q Consensus        14 ~~~~~---~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~-----G~~~~GVdl~~g~i~d~~e   82 (137)
                      +-|.+   ++.+++|++|+++++|  |||+| ++||+|||+|+++++.+|+..|..     ++.++|+|+.+|++.||.+
T Consensus       424 ~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~G~d~~~g~~~d~~~  503 (546)
T 3p9d_F          424 RYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTI  503 (546)
T ss_dssp             HHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHHTTSTTSSCCCCBTTTTBCCCSGG
T ss_pred             HHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhhcccCCceeeEeCCCCeecchHh
Confidence            34666   5889999999999999  99999 999999999999999999999873     4467899999999999999


Q ss_pred             hCccccHHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834          83 LGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE  122 (137)
Q Consensus        83 ~gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~  122 (137)
                      .|||||+.||+++|++|+++|++|||||+||++++.++.+
T Consensus       504 ~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~~~~~~~  543 (546)
T 3p9d_F          504 EGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRSTLKE  543 (546)
T ss_dssp             GTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCSSCCC
T ss_pred             ccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence            9999999999999999999999999999999998776655

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.90  E-value=9e-24  Score=182.74  Aligned_cols=102  Identities=25%  Similarity=0.223  Sum_probs=96.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhC-CCceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGD-GETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~-G~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|.. ++.++|+|+.+|++.||.+.|||||+
T Consensus       409 ~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~  488 (515)
T 3iyg_E          409 LAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETL  488 (515)
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcccchHhccCEEcH
Confidence            457889999999999999999  99999 999999999999999999999975 55689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSG  115 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~  115 (137)
                      .||+++|++|+++|++|||||+||++
T Consensus       489 ~vk~~al~~A~~~a~~iL~iD~ii~~  514 (515)
T 3iyg_E          489 IGKKQQISLATQMVRMILKIDDIRKP  514 (515)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence            99999999999999999999999986

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=99.90  E-value=3.7e-24  Score=187.10  Aligned_cols=106  Identities=19%  Similarity=0.180  Sum_probs=98.4

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhC-CCceeeeeccCcchhhhhhhCccccH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGD-GETTFGINGETGDLVDMKTLGIWEPL   89 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~-G~~~~GVdl~~g~i~d~~e~gV~dP~   89 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|.. ++.++|+|+.+|++.||.+.|||||+
T Consensus       452 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~  531 (562)
T 3p9d_E          452 LAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPF  531 (562)
T ss_dssp             HHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTTBCCBTTTTTCEEEH
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCCcccchHhccCEEcH
Confidence            457889999999999999999  99999 999999999999999999999974 55679999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhhhcCCcCC
Q psy2834          90 TVKLQVYKTAVETAILLLRIDDIVSGSKKK  119 (137)
Q Consensus        90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~~~  119 (137)
                      .||+++|++|+++|++|||||++|++++.+
T Consensus       532 ~vk~~al~~A~e~a~~iL~iD~ii~~~~~~  561 (562)
T 3p9d_E          532 IGKKQQILLATQLCRMILKIDNVIISGKDE  561 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHTEEEEEECCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            999999999999999999999999987653

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=99.90  E-value=4.4e-24  Score=185.97  Aligned_cols=106  Identities=25%  Similarity=0.341  Sum_probs=96.5

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|.+|+.++|+|+.+|++.||.+.|||||+.
T Consensus       417 ~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  496 (545)
T 1a6d_A          417 MRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLR  496 (545)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHH
T ss_pred             HHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecccCccccchhcCccccHH
Confidence            457889999999999999999  99999 999999999999999999999988877899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKK  119 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~  119 (137)
                      ||.++|++|+++|++||+||++|...|.+
T Consensus       497 vk~~al~~A~e~a~~iL~id~iI~~~~~~  525 (545)
T 1a6d_A          497 VKTHALESAVEVATMILRIDDVIASKKST  525 (545)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999997765

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=99.89  E-value=1.7e-24  Score=188.02  Aligned_cols=103  Identities=19%  Similarity=0.196  Sum_probs=98.1

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|..|+.++|+|+.+|++.||.+.|||||+.
T Consensus       423 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~  502 (528)
T 3p9d_D          423 RRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVL  502 (528)
T ss_dssp             HHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSSSSSCCCHHHHCCEEEHH
T ss_pred             HHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecCCCCccchHhccCeecHH
Confidence            457788889999999999999  99999 999999999999999999999988888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      ||+++|++|+++|++|||||+||+++
T Consensus       503 vk~~al~~A~e~a~~iL~iD~ii~~~  528 (528)
T 3p9d_D          503 VSTSAITLASECVKSILRIDDIAFSR  528 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCCCBCC
T ss_pred             HHHHHHHHHHHHHHHHHhhhHheecC
Confidence            99999999999999999999999864

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=99.89  E-value=3.2e-24  Score=186.92  Aligned_cols=108  Identities=27%  Similarity=0.309  Sum_probs=99.3

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|.+|+.++|+|+.+|++.||.+.|||||+.
T Consensus       420 ~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~  499 (548)
T 1q3q_A          420 IRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLR  499 (548)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHH
T ss_pred             HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCCCCCccchhhcCCEecHH
Confidence            457888988999999999999  99999 999999999999999999999987777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKD  121 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~  121 (137)
                      ||.++|++|+++|++||+||++|...|.+.+
T Consensus       500 vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~  530 (548)
T 1q3q_A          500 VKKQAIKSASEAAIMILRIDDVIAAKATKPE  530 (548)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEECCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence            9999999999999999999999999876543

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=99.89  E-value=7.4e-24  Score=186.36  Aligned_cols=105  Identities=36%  Similarity=0.538  Sum_probs=99.7

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +.|.+++.+++|++|+++++|  |||+| ++||+|||+|+++++.+++..|..|+.++|+|+.+|++.||.+.|||||+.
T Consensus       481 ~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~  560 (590)
T 3p9d_C          481 VKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEV  560 (590)
T ss_dssp             HHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCEEHH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeEcHH
Confidence            457889999999999999999  99999 999999999999999999999988888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKK  118 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~  118 (137)
                      ||+++|++|+++|++||+||++|...|.
T Consensus       561 vk~~al~~A~e~a~~iL~id~ii~~~~~  588 (590)
T 3p9d_C          561 IKQQSVKTAIESACLLLRVDDIVSGVRK  588 (590)
T ss_dssp             HHHHHHHHHHHHHHHTTSEEEEECCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999988764

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=99.88  E-value=4.2e-23  Score=179.94  Aligned_cols=109  Identities=23%  Similarity=0.310  Sum_probs=97.8

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      +-|.+++.+++|.+|+++++|  ||++| ++||+|||+|+.+++.+++..|+  +.++|+|+.+|++.||.+.|||||+.
T Consensus       422 ~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~--~~~~G~d~~~g~~~dm~~~gI~dp~~  499 (543)
T 1we3_A          422 SAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETK--NPRYGFNAATGEFVDMVEAGIVDPAK  499 (543)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS--CTTEEEETTTTEEEETTTTTCEEEHH
T ss_pred             HHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcC--CCCEEEeCCCCeecccccCCcCccHH
Confidence            457788888999999999999  99999 99999999999999999998874  45689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCC
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ  124 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~  124 (137)
                      ||.++|++|+++|++||+||++|...|.+.+.+|
T Consensus       500 vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~  533 (543)
T 1we3_A          500 VTRSALQNAASIGALILTTEAVVAEKPEKKESTP  533 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEEEEEECSCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCC
Confidence            9999999999999999999999999887655444

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=99.86  E-value=1.8e-22  Score=176.23  Aligned_cols=104  Identities=21%  Similarity=0.274  Sum_probs=82.9

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -|.+++  ++|++|+++++|  |||+| ++||+|||+|+.+++.+++.. ..+   +|+|+.+|++.||.+.|||||+.|
T Consensus       423 ~L~~~~--~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~-~~~---~G~d~~~g~~~Dm~~~gI~dp~~v  496 (546)
T 3rtk_A          423 TLDELK--LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL-PAG---HGLNAQTGVYEDLLAAGVADPVKV  496 (546)
T ss_dssp             GSTTSC--CCTTHHHHHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS-CTT---EECCSSSCCCEETTTTTCEEEHHH
T ss_pred             HHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh-cCC---EeEcCCCCcEeeHHHcCCEecHHH
Confidence            344555  799999999999  99999 999999999999999999874 222   799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ  124 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~  124 (137)
                      |.++|++|+++|++||+||++|..+|.+++.+|
T Consensus       497 k~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~  529 (546)
T 3rtk_A          497 TRSALQNAASIAGLFLTTEAVVADKPEKEKASV  529 (546)
T ss_dssp             HHHHHHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            999999999999999999999999988776543

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=99.84  E-value=6.7e-22  Score=172.49  Aligned_cols=103  Identities=18%  Similarity=0.273  Sum_probs=91.7

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      -|.+++. ++|++|+++++|  ||++| ++||+|||+|+.+++.+++..|   +.++|+|+.+|++.||.+.|||||+.|
T Consensus       425 ~L~~~~~-~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~---~~~~G~d~~~g~~~dm~~~gI~dp~~v  500 (545)
T 1iok_A          425 VLEGLSG-ANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESS---DKAFGFNAQTEEYGDMFKFGVIDPAKV  500 (545)
T ss_dssp             GGGSCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCC---STTEEEETTTTEEEEHHHHTCEEEHHH
T ss_pred             HHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCCCCcccchHhcCcEEccHH
Confidence            3555655 789999999999  99999 9999999999999999999765   356899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCCcCCCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGSKKKKD  121 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~  121 (137)
                      |.++|+.|+++|++||+||++|...|.+.+
T Consensus       501 k~~al~~A~~~A~~iL~id~iI~~~~~~~~  530 (545)
T 1iok_A          501 VRTALEDAASVAGLLITTEAMIAEKPEPKA  530 (545)
T ss_dssp             HHHHHHHHHHHHHHHHTEEEEEEECC----
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhccCCccCC
Confidence            999999999999999999999999876543

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=99.83  E-value=2.6e-21  Score=168.91  Aligned_cols=100  Identities=18%  Similarity=0.240  Sum_probs=90.6

Q ss_pred             HHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHHH
Q psy2834          16 ENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVK   92 (137)
Q Consensus        16 ~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~vK   92 (137)
                      |.+++. ++|++|+++++|  ||++| ++||+|||+|+.+++.+++..    +.++|+|+.+|++.||.+.|||||+.||
T Consensus       425 L~~~~~-~~g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk  499 (547)
T 1kp8_A          425 LADLRG-QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG----DGNYGYNAATEEYGNMIDMGILDPTKVT  499 (547)
T ss_dssp             TTTCCC-SSHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS----CTTEEEETTTTEEEETTTTTCEEEHHHH
T ss_pred             HHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc----CCCEeEeCCCCccccchhcCceechHhH
Confidence            445555 789999999999  99999 999999999999999999854    3568999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhchhhhhcCCcCCC
Q psy2834          93 LQVYKTAVETAILLLRIDDIVSGSKKKK  120 (137)
Q Consensus        93 ~~~i~~Ate~A~~ILrID~iI~~~~~~~  120 (137)
                      .++|++|+++|++||+||++|...|.+.
T Consensus       500 ~~al~~A~~~A~~iL~id~iI~~~~~~~  527 (547)
T 1kp8_A          500 RSALQYAASVAGLMITTECMVTDLPKND  527 (547)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEECCC--
T ss_pred             HHHHHHHHHHHHHHHhHhheeecCCccC
Confidence            9999999999999999999999988655

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=93.69  E-value=0.027  Score=48.86  Aligned_cols=59  Identities=25%  Similarity=0.349  Sum_probs=50.1

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|+
T Consensus        69 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~~LL~ea~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  131 (543)
T 1we3_A           69 GAQLLKEVASKTNDVAGDGTTTA--TVLAQAIVREGLKNVAAGA-NPLAL-KRGIEKAVEAAVEKIK  131 (543)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHH--HHHHHHHHHHHHHHHHTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhheecCCCcchH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            56778899999999999999986  78888876554    5788 99985 7899999999999885

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=93.67  E-value=0.027  Score=48.38  Aligned_cols=60  Identities=40%  Similarity=0.615  Sum_probs=50.3

Q ss_pred             ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .+++.+.++...|+.+.+||+|++  .++.|+++...    +.|+ +|..+ .+.|+.|.+.|..+|+
T Consensus        63 P~Akll~e~a~~qd~e~GDGTTtv--vvLAgeLL~~a~~ll~~Gi-hP~~I-~~G~~~A~~~a~~~L~  126 (515)
T 3iyg_G           63 PAAKSMIEISRTQDEEVGDGTTSV--IILAGEMLSVAEHFLEQQM-HPTVV-ISAYRKALDDMISTLK  126 (515)
T ss_pred             HHHHHHHHHHHHhhhhhCCChhhH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            356778899999999999999886  77888877554    5788 99985 7899999999998885

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=93.21  E-value=0.038  Score=47.62  Aligned_cols=60  Identities=30%  Similarity=0.423  Sum_probs=50.4

Q ss_pred             ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .+++.+.++...++.+.+||+|++  .++.|+++...    +.|+ +|..+ .+.|+.|.+.|..+|+
T Consensus        64 P~akll~~~a~~qd~e~GDGTTtv--vvLA~eLL~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  127 (529)
T 3iyg_A           64 PAAKVLCELADLQDKEVGDGTTSV--VIIAAELLKNADELVKQKI-HPTSV-ISGYRLACKEAVRYIS  127 (529)
T ss_pred             hHHHHHHHHHHHhhhhhCCChhhH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            356778899999999999999886  78888887654    4688 99985 8899999999998885

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=93.07  E-value=0.044  Score=47.09  Aligned_cols=60  Identities=28%  Similarity=0.446  Sum_probs=50.4

Q ss_pred             ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      .+++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ +..|+.|.+.|..+|+
T Consensus        66 p~Akll~e~a~~qd~e~GDGTTtv--vVLA~~LL~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  129 (513)
T 3iyg_B           66 PAAKVLVDMSRVQDDEVGDGTTSV--TVLAAELLREAESLIAKKI-HPQTI-IAGWREATKAARQALL  129 (513)
T ss_pred             HHHHHHHHHHHHhhhhhCCChhhh--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            366778899999999999999886  78888887654    4788 99985 7899999999998885

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=93.03  E-value=0.04  Score=47.91  Aligned_cols=59  Identities=22%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++++.+||+|++  .++.++++...    +.|+ +|..+ +..|+.|.+.|...|+
T Consensus        69 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~~Ll~ea~~lv~~Gi-hP~~I-~~G~~~A~~~a~~~L~  131 (547)
T 1kp8_A           69 GAQMVKEVASKANDAAGDGTTTA--TVLAQAIITEGLKAVAAGM-NPMDL-KRGIDKAVTVAVEELK  131 (547)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHH--HHHHHHHHHHHHHHHHTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCcchh--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            56778899999999999999986  78888876553    5888 99884 7899999999999885

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=92.98  E-value=0.048  Score=46.87  Aligned_cols=59  Identities=31%  Similarity=0.527  Sum_probs=49.6

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|+
T Consensus        66 ~akll~~~a~~qd~~~GDGTTtv--vVLA~~Ll~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  128 (518)
T 3iyg_D           66 AARMLVELSKAQDIEAGDGTTSV--VIIAGSLLDSCTKLLQKGI-HPTII-SESFQKALEKGIEILT  128 (518)
T ss_pred             HHHHHHHHHHHhhhhhCCCceeH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            56778899999999999999886  78888877554    5788 99985 7899999999998875

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=92.96  E-value=0.051  Score=46.76  Aligned_cols=59  Identities=27%  Similarity=0.425  Sum_probs=49.8

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|.
T Consensus        65 ~akll~~~a~~qd~e~GDGTTtv--vvLa~~Ll~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  127 (517)
T 3iyg_Z           65 TASLIAKVATAQDDITGDGTTSN--VLIIGELLKQADLYISEGL-HPRII-TEGFEAAKEKALQFLE  127 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCceeH--HHHHHHHHHHHHHHHhcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            56678899999999999999886  78888887554    4788 99985 8899999999999885

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=92.55  E-value=0.063  Score=46.69  Aligned_cols=59  Identities=29%  Similarity=0.495  Sum_probs=49.4

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ +..|+.|.+.|...|+
T Consensus       100 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~~LL~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  162 (562)
T 3p9d_E          100 IAKLLVQLSKSQDDEIGDGTTGV--VVLASALLDQALELIQKGI-HPIKI-ANGFDEAAKLAISKLE  162 (562)
T ss_dssp             HHHHHHHHHHHHHHHTSSCTTHH--HHHHHHHHHHHHHHHTTTC-CHHHH-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhcCCCcccH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45568889999999999999986  77888887554    4788 99985 8899999999999885

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=92.54  E-value=0.049  Score=46.75  Aligned_cols=59  Identities=27%  Similarity=0.420  Sum_probs=49.8

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|+
T Consensus        66 ~Akll~e~a~~qd~~~GDGTTtv--vVLA~~Ll~~a~~lv~~Gi-hP~~I-~~G~~~A~~~a~~~L~  128 (512)
T 3iyg_Q           66 AAKMIVMASHMQEQEVGDGTNFV--LVFAGALLELAEELLRLGL-SVSEV-IEGYEIACKKAHEILP  128 (512)
T ss_pred             HHHHHHHHHHHhhhhhCCChhHH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            46778899999999999999886  78888887554    5798 99985 8899999999998884

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=92.42  E-value=0.068  Score=46.08  Aligned_cols=59  Identities=27%  Similarity=0.487  Sum_probs=49.3

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|+
T Consensus        74 ~akll~e~a~~qd~e~GDGTTtv--vVLA~~Ll~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  136 (528)
T 3p9d_D           74 VARMLVEVSAAQDSEAGDGTTSV--VILTGALLGAAERLLNKGI-HPTII-ADSFQSAAKRSVDILL  136 (528)
T ss_dssp             THHHHHHHHHHHHHHTCSCSHHH--HHHHHHHHHHHHHHHTTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhCCChhhH--HHHHHHHHHHHHHHHHCCC-ChHHH-HHHHHHHHHHHHHHHH
Confidence            45568899999999999999986  78888887554    4788 99985 7899999999998875

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=92.20  E-value=0.055  Score=46.44  Aligned_cols=59  Identities=34%  Similarity=0.544  Sum_probs=49.6

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|.
T Consensus        65 ~Akll~~~a~~qd~~~GDGTTtv--vVLA~~Ll~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  127 (515)
T 3iyg_E           65 IAKLMVELSKSQDDEIGDGTTGV--VVLAGALLEEAEQLLDRGI-HPIRI-ADGYEQAARIAIEHLD  127 (515)
T ss_pred             HHHHHHHHHHHhhhhhCCchhHH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            56778899999999999999986  78888877554    4788 99985 7899999999998874

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=92.09  E-value=0.077  Score=45.66  Aligned_cols=59  Identities=31%  Similarity=0.501  Sum_probs=47.9

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hh-CccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TL-GIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~-gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.++++...    +. |+ +|..+ +..|+.|.+.|...|+
T Consensus        73 ~Akll~e~a~~qd~~~GDGTTta--vVLA~~Ll~ea~~lv~~~Gi-hP~~I-~~G~~~A~~~a~~~L~  136 (527)
T 3p9d_B           73 AAKVLVNISKVQDDEVGDGTTSV--TVLSAELLREAEKLIDQSKI-HPQTI-IEGYRLASAAALDALT  136 (527)
T ss_dssp             HHHHHHHHHHHHHHHTCSCTTTT--THHHHHHHHHHHHHTC---C-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHhhhCCcHhHH--HHHHHHHHHHHHHHHHhcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            55678899999999999999986  78888887654    45 88 99985 7899999999998885

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=91.85  E-value=0.059  Score=46.64  Aligned_cols=59  Identities=27%  Similarity=0.376  Sum_probs=49.1

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++..+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|..+|.
T Consensus        72 ~akll~e~a~~qd~e~GDGTTtv--vVLA~eLL~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  134 (546)
T 3p9d_F           72 TAVLIARAAAAQDEITGDGTTTV--VCLVGELLRQAHRFIQEGV-HPRII-TDGFEIARKESMKFLD  134 (546)
T ss_dssp             HHHHHHHHHHHHHHHCSSCHHHH--HHHHHHHHHHHHHHTTTTB-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcccH--HHHHHHHHHHHHHHHhCCC-ChHHH-HHHHHHHHHHHHHHHH
Confidence            34567789999999999999886  78888887654    4688 99985 7899999999999884

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=91.77  E-value=0.066  Score=46.54  Aligned_cols=59  Identities=31%  Similarity=0.527  Sum_probs=49.5

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|..+|+
T Consensus        79 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~~LL~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  141 (559)
T 3p9d_A           79 AGKILVELAQQQDREIGDGTTSV--VIIASELLKRANELVKNKI-HPTTI-ITGFRVALREAIRFIN  141 (559)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHH--HHHHHHHHHHHHHHHTTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcchH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45678899999999999999886  77888887554    4788 99985 7899999999998875

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=91.67  E-value=0.048  Score=46.90  Aligned_cols=59  Identities=27%  Similarity=0.559  Sum_probs=49.5

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|+
T Consensus        66 ~Akll~e~a~~qd~~~GDGTTtv--vVLA~~Ll~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  128 (515)
T 3iyg_H           66 AAKTLVDIAKSQDAEVGDGTTSV--TLLAAEFLKQVKPYVEEGL-HPQII-IRAFRTATQLAVNKIK  128 (515)
T ss_pred             HHHHHHHHHHHhhceeCcchhhH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            46678889999999999999886  78888887554    5788 99985 8899999999998885

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=91.59  E-value=0.071  Score=46.19  Aligned_cols=59  Identities=37%  Similarity=0.495  Sum_probs=49.7

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++++.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|+
T Consensus        78 ~Akll~e~a~~qd~e~GDGTTtv--vvLA~~LL~~a~~ll~~Gi-hP~~I-~~G~~~A~~~a~~~L~  140 (548)
T 1q3q_A           78 AAKMMVEVAKTQDKEAGDGTTTA--VVIAGELLRKAEELLDQNI-HPSII-TKGYALAAEKAQEILD  140 (548)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHH--HHHHHHHHHHHHHHHHTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEECCChhHH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            56678899999999999999886  78888876554    5788 99985 7899999999999885

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=91.36  E-value=0.076  Score=45.93  Aligned_cols=59  Identities=37%  Similarity=0.556  Sum_probs=49.4

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.++++...    +.|+ +|..+ ++.|+.|.+.|..+|+
T Consensus        74 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~~Ll~~a~~ll~~Gi-hP~~I-~~G~~~A~~~a~~~L~  136 (543)
T 3ruv_A           74 AAKMLIEVAKTQEKEVGDGTTTA--VVVAGELLRKAEELLDQNV-HPTIV-VKGYQAAAQKAQELLK  136 (543)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHH--HHHHHHHHHHHHHHHTTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhCCCcccH--HHHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45668899999999999999886  77888877554    4788 99985 7899999999998885

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=90.79  E-value=0.039  Score=47.22  Aligned_cols=63  Identities=30%  Similarity=0.452  Sum_probs=37.0

Q ss_pred             HHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          42 AGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        42 La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +-+.+++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|.
T Consensus        24 v~hP~Akll~e~a~~qd~e~GDGTTtv--vvLa~~LL~~a~~ll~~Gi-hP~~I-~~G~~~A~~~a~~~L~   90 (500)
T 3aq1_B           24 IQHPAAKMIVEVSKTQDAEVGDGTTTA--AVLSGELLSKAEELIMKGV-HSTII-SEGYRHAAEKCREILE   90 (500)
T ss_dssp             -------------------CCHHHHHH--HHHHHHHHHHHHHHHTTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhhhhhCCChHHH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            344578889999999999999999886  78888887554    5888 99985 7899999999999885

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=90.19  E-value=0.072  Score=46.36  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=49.1

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++...++.+.+||+|++  .++.|+++...    +.|+ +|..+ +..|+.|++.|..+|+
T Consensus        81 ~Akll~e~a~~qd~e~GDGTTtv--vvLa~~Ll~~a~~ll~~Gi-hP~~I-~~G~~~A~~~a~e~L~  143 (568)
T 3p9d_H           81 AVKVLVMATEQQKIDMGDGTNLV--MILAGELLNVSEKLISMGL-SAVEI-IQGYNMARKFTLKELD  143 (568)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHH--HHHHHHHHHHHHHHHHHTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhceeCCCceeh--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45568899999999999999986  77888887554    4788 99985 7899999999999884

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=90.19  E-value=0.062  Score=46.59  Aligned_cols=59  Identities=32%  Similarity=0.544  Sum_probs=49.1

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++++.+||+|++  .++.++++...    +.|+ +|..+ +..|+.|++.|...|+
T Consensus        79 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~~Ll~~a~~lv~~Gi-hP~~I-~~G~~~A~~~a~~~L~  141 (550)
T 3p9d_G           79 AAKTLVDISRAQDAEVGDGTTSV--TILAGELMKEAKPFLEEGI-SSHLI-MKGYRKAVSLAVEKIN  141 (550)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHH--HHHHHHHHHTTSHHHHSSS-CTTHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhCCCceeh--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45668899999999999999886  77888876553    5788 99985 8899999999998885

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=89.55  E-value=0.057  Score=47.00  Aligned_cols=58  Identities=29%  Similarity=0.327  Sum_probs=41.0

Q ss_pred             CccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          47 GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        47 G~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      ++.+.++..+++++.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|..+|+
T Consensus        70 Akll~e~a~~qd~e~GDGTTtv--vVLAgeLL~ea~~li~~Gi-hP~~I-~~G~~~A~~~a~e~L~  131 (546)
T 3rtk_A           70 AELVKEVAKKTDDVAGDGTTTA--TVLAQALVREGLRNVAAGA-NPLGL-KRGIEKAVEKVTETLL  131 (546)
T ss_dssp             HHHHHHHHTSCC-------CHH--HHHHHHHHHHHHHHHTTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhCCCcchH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            4567778888888999999886  78888887554    4788 99985 8899999999999885

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=89.32  E-value=0.073  Score=46.69  Aligned_cols=59  Identities=39%  Similarity=0.607  Sum_probs=48.8

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh-----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM-----KTLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~-----~e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++..     .+.|+ +|..+ +..|+.|.+.|..+|.
T Consensus        74 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~eLL~~a~~l~l~~Gi-hP~~I-~~G~~~A~~~a~~~L~  137 (590)
T 3p9d_C           74 AAKSMLELSRTQDEEVGDGTTTV--IILAGEILAQCAPYLIEKNI-HPVII-IQALKKALTDALEVIK  137 (590)
T ss_dssp             HHHTHHHHTTTHHHHCSSCHHHH--HHHHHHHHHHHHHHHHSCCC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhCCCccch--HHHHHHHHhhhHHhhhhcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45778889999999999999886  7788887654     45688 99985 8899999999998875

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=87.15  E-value=0.066  Score=46.49  Aligned_cols=59  Identities=32%  Similarity=0.456  Sum_probs=47.8

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ +..|+.|.+.|..+|+
T Consensus        85 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~eLL~~a~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  147 (553)
T 3ko1_A           85 AAKLLVQIAKGQDEETADGTKTA--VIFSGELVKKAEDLLYKDV-HPTII-ISGYKKAEEVALQTIQ  147 (553)
T ss_dssp             HHHHHHHHHHTCSSSSSTTHHHH--HHHHHHHHHHHHHHHHTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhCCcccccCCceeE--EEehHHHHHhHHHHHhcCC-CceEE-ehhhhHHHHHHHHHHH
Confidence            44557788888888899999886  78888877554    5788 99985 7899999999998875

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=86.39  E-value=0.11  Score=44.98  Aligned_cols=59  Identities=20%  Similarity=0.327  Sum_probs=49.1

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++++.+||+|++  .++.++++...    +.|+ +|..+ ++.|+.|.+.|...|+
T Consensus        70 ~Akll~e~a~~qd~e~GDGTTtv--vVLA~~Ll~ea~~li~~Gi-hP~~I-~~G~~~A~~~a~~~L~  132 (545)
T 1iok_A           70 GAQMVREVASRTNDEAGDGTTTA--TVLAQAIVREGLKAVAAGM-NPMDL-KRGIDVATAKVVEAIK  132 (545)
T ss_dssp             HHHHHHHHHHHGGGGCSTHHHHH--HHHHHHHHHHHHHHHHTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCcchH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45677889999999999999886  78888876553    5888 99984 7899999999999885

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=85.55  E-value=0.059  Score=46.58  Aligned_cols=59  Identities=32%  Similarity=0.452  Sum_probs=48.0

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++.+.+||+|++  .++.|+++...    +.|+ +|..+ .+.|+.|.+.|...|.
T Consensus        76 ~Akll~e~a~~qd~e~GDGTTtv--vvLA~~LL~~a~~ll~~Gi-hP~~I-~~G~~~A~~~a~~~L~  138 (543)
T 1a6d_B           76 AAKMMVEVSKTQDSFVGDGTTTA--VIIAGGLLQQAQGLINQNV-HPTVI-SEGYRMASEEAKRVID  138 (543)
T ss_dssp             HHHHHHHHHTCTTCCCTTHHHHH--HHHHHHHHHHHHHHHHTTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEECCChhHH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            45667788888888889999886  77888876554    5788 99985 7899999999999885

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=81.95  E-value=0.074  Score=46.04  Aligned_cols=59  Identities=32%  Similarity=0.522  Sum_probs=47.4

Q ss_pred             cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834          46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR  108 (137)
Q Consensus        46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr  108 (137)
                      +++.+.++..+++++.+||+|++  .++.|+++...    +.|+ +|..+ ++.|+.|.+.|...|.
T Consensus        77 ~Akll~e~a~~qd~e~GDGTTtv--vvLA~~LL~~a~~ll~~Gi-hP~~I-~~G~~~A~~~a~~~L~  139 (545)
T 1a6d_A           77 TAKMIVEVSKAQDTAVGDGTTTA--VVLSGELLKQAETLLDQGV-HPTVI-SNGYRLAVNEARKIID  139 (545)
T ss_dssp             HHHHHHGGGGCTTTCSTTHHHHH--HHHHHHHHHHHHHHHHHTC-CHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEECCChhHH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence            44556677778888889998886  77888876554    5898 99985 7899999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1a6db1	243	a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai	9e-17
d1a6da1	245	a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai	3e-15
d1q3qa1	258	a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain	6e-13
d1we3a1	255	a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The	2e-08
d1sjpa1	180	a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My	2e-05

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 71.7 bits (175), Expect = 9e-17
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G   I+I      E   G  T+GIN  TG++ DM   G+ EP+ V  Q  ++A E AI++
Sbjct: 176 GLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMI 235

Query: 107 LRIDDIVS 114
           LRIDD+++
Sbjct: 236 LRIDDVIA 243

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 67.5 bits (164), Expect = 3e-15
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G   I        +   G  + G++ +   + DMK  G+ +PL VK    ++AVE A ++
Sbjct: 179 GIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMI 238

Query: 107 LRIDDIV 113
           LRIDD++
Sbjct: 239 LRIDDVI 245

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 61.3 bits (148), Expect = 6e-13
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G   +E+      E  +     GI+   G   DM   GI EPL VK Q  K+A E AI++
Sbjct: 188 GLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMI 247

Query: 107 LRIDDIVS 114
           LRIDD+++
Sbjct: 248 LRIDDVIA 255

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G     I +    E  +     G N  TG+ VDM   GI +P  V     + A     L+
Sbjct: 187 GYEGSVIVQQILAETKNPRY--GFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALI 244

Query: 107 LRIDDIVS 114
           L  + +V+
Sbjct: 245 LTTEAVVA 252

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 60  EVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLL 107
           +V +     G+N +TG   D+   G+ +P+ V     + A   A L L
Sbjct: 130 KVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFL 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.92
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.89
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	99.78
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	99.62
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	99.54
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	99.01
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	98.4

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.92  E-value=5.8e-26  Score=178.63  Aligned_cols=101  Identities=30%  Similarity=0.395  Sum_probs=97.7

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      .-+.+++++++|++||++++|  ||+.| ++||+|+|+|+++++.+++..|..|+.++|||+.+|++.||.+.|||||+.
T Consensus       140 ~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~  219 (243)
T d1a6db1         140 FRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIR  219 (243)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHH
T ss_pred             HHHhhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHH
Confidence            568899999999999999999  99999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhc
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVS  114 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~  114 (137)
                      ||+++|++|+|+|++|||||+||.
T Consensus       220 vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         220 VGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999874

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.89  E-value=1.5e-23  Score=164.37  Aligned_cols=100  Identities=25%  Similarity=0.345  Sum_probs=96.5

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      ..+.+++.+++|.+|+++++|  ||++| ++|++|+|+|+++++.+++..|.+++.++|+++.+|.+.||.+.|||||+.
T Consensus       143 ~~l~~~a~~~~g~eq~a~~~~a~Ale~ip~~laeNaG~D~i~iv~~l~~~~~~~~~~~Gv~~~~g~i~d~~~~gV~dp~~  222 (245)
T d1a6da1         143 MRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLR  222 (245)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHH
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhhhhhhhhccCCCCchhhhhhhhcccccCCceeeEEccCCeEeehHhcCccccHH
Confidence            457888999999999999999  99999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhh
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIV  113 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI  113 (137)
                      ||.+++++|+|+|++|||||+||
T Consensus       223 vk~~~l~~A~e~a~~iL~iD~ii  245 (245)
T d1a6da1         223 VKTHALESAVEVATMILRIDDVI  245 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEC
T ss_pred             HHHHHHHHHHHHHHHHHhhceeC
Confidence            99999999999999999999986

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.78  E-value=5.5e-20  Score=144.81  Aligned_cols=102  Identities=27%  Similarity=0.318  Sum_probs=97.2

Q ss_pred             hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834          15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV   91 (137)
Q Consensus        15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v   91 (137)
                      .+.++++.++|.+++++++|  ||+.| ++|++|+|++.++++.+++..|.+++.++|+++.+|.+.||.+.|||||+.|
T Consensus       153 ~l~~~a~~~~~~~~~a~~~~a~Al~~Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~p~~v  232 (258)
T d1q3qa1         153 RLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRV  232 (258)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHH
T ss_pred             HHHhhhcccchHHHHHHHHHHHhccchhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECCEEeEchHcCccccHHH
Confidence            36678889999999999999  99999 9999999999999999999999888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834          92 KLQVYKTAVETAILLLRIDDIVSGS  116 (137)
Q Consensus        92 K~~~i~~Ate~A~~ILrID~iI~~~  116 (137)
                      |.++++.|++++.+||+||++|+++
T Consensus       233 k~~~l~~A~e~a~~IL~iD~iI~ak  257 (258)
T d1q3qa1         233 KKQAIKSASEAAIMILRIDDVIAAK  257 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             HHHHHHHHHHHhCcceeEccEEeeC
Confidence            9999999999999999999999885

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=2.5e-16  Score=122.54  Aligned_cols=102  Identities=23%  Similarity=0.300  Sum_probs=92.4

Q ss_pred             hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834          14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT   90 (137)
Q Consensus        14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~   90 (137)
                      .-+..++...+|.++++++.|  ||+.| +++++|+|+++..+.......+.+  ..+|+++.+|.+.||++.|||||+.
T Consensus       151 ~~~~~~~~~~~g~~~~g~~iva~Al~~~~~~~~~nag~~~~~~~~~~~~~~~~--~~~g~d~~~g~~~D~~e~Giidp~~  228 (255)
T d1we3a1         151 SAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKN--PRYGFNAATGEFVDMVEAGIVDPAK  228 (255)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCSC--TTEEEETTTTEEEETTTTTCEEEHH
T ss_pred             hhhHhhccCCChHHHHHHHHHHHHHhhhHHHHHhhcccccceeeeeeeecccC--CceeEEeeccEEeehhhcCCcCchH
Confidence            456788889999999999999  99999 999999999998888777665443  4579999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834          91 VKLQVYKTAVETAILLLRIDDIVSGSK  117 (137)
Q Consensus        91 vK~~~i~~Ate~A~~ILrID~iI~~~~  117 (137)
                      |+.+.+..|++.+.+||++|++|...|
T Consensus       229 V~~~a~~~A~~~a~~iL~~d~~I~~~p  255 (255)
T d1we3a1         229 VTRSALQNAASIGALILTTEAVVAEKP  255 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEEEEEECS
T ss_pred             hhHHHHHHHHHHhchHhhcchhhhcCC
Confidence            999999999999999999999998876

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=99.54  E-value=8.5e-15  Score=109.65  Aligned_cols=86  Identities=22%  Similarity=0.247  Sum_probs=78.0

Q ss_pred             hhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHHHHHHH
Q psy2834          20 QAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVY   96 (137)
Q Consensus        20 a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~vK~~~i   96 (137)
                      +....+.+++++++|  ||+.| ++|++|+|+++..++..++.    +..++|+|..+|.+.||++.|||||..|.+++|
T Consensus        91 ~~~~~~~e~~g~~i~~~Al~~p~~~I~~NaG~~~~~v~~~~~~----~~~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL  166 (180)
T d1sjpa1          91 ELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRN----LPAGHGLNAQTGVYEDLLAAGVADPVKVTRSAL  166 (180)
T ss_dssp             GSCCCTHHHHHHHHHHHHTTHHHHHHHHTTTSCHHHHHHHHHT----SCTTEECCTTTCCCEETTTTTCEEEHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhc----cccccCccccccccccHHHcCCcCcHHHHHHHH
Confidence            446789999999999  99999 99999999999988888763    235689999999999999999999999999999


Q ss_pred             HHHHHHHHHHhch
Q psy2834          97 KTAVETAILLLRI  109 (137)
Q Consensus        97 ~~Ate~A~~ILrI  109 (137)
                      +.|+++|.++|..
T Consensus       167 ~~A~s~a~~~ltt  179 (180)
T d1sjpa1         167 QNAASIAGLFLTT  179 (180)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHhC
Confidence            9999999999964

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.01  E-value=2.5e-10  Score=88.43  Aligned_cols=91  Identities=20%  Similarity=0.333  Sum_probs=80.9

Q ss_pred             CChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHHHHHHHHHHH
Q psy2834          24 PTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAV  100 (137)
Q Consensus        24 ~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~vK~~~i~~At  100 (137)
                      .+.+++++..+  |++.+ +++++|+|++...++.+...   ..+..+|++..++...+|++.||+||+.|...++..|.
T Consensus       159 ~~d~~~G~~iv~~Al~~p~~~i~~naG~dg~~vv~~~~~---~~~~~~g~~~~~~~~g~~~~~GiidP~kVt~~al~~A~  235 (252)
T d1ioka1         159 NSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRE---SSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAA  235 (252)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHS---CCSTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccCCCcceEEEeecc---cCcCCEEEEceeeeEeeeecccccCcHHHHHHHHHHHH
Confidence            45688999998  99999 99999999999999877653   34567899999999999999999999999999999999


Q ss_pred             HHHHHHhchhhhhcCCc
Q psy2834         101 ETAILLLRIDDIVSGSK  117 (137)
Q Consensus       101 e~A~~ILrID~iI~~~~  117 (137)
                      +.|.++|..|.+|...|
T Consensus       236 sva~~lltte~~i~~~p  252 (252)
T d1ioka1         236 SVAGLLITTEAMIAEKP  252 (252)
T ss_dssp             HHHHHHHTEEEEEEECC
T ss_pred             hhhhHHHhhceeeecCC
Confidence            99999999998887654

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=1.8e-07  Score=71.96  Aligned_cols=90  Identities=21%  Similarity=0.315  Sum_probs=78.9

Q ss_pred             CChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHHHHHHHHHHH
Q psy2834          24 PTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAV  100 (137)
Q Consensus        24 ~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~vK~~~i~~At  100 (137)
                      .+.++++...+  ||+.+ ++++.|+|.+...++.....  .++  .+|++..++...++++.|++||+.|...++..|.
T Consensus       159 n~d~~iG~~Iv~~Al~~p~~~i~~nag~~g~~~~~~v~~--~~~--~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~  234 (252)
T d1kp8a1         159 NADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKG--GDG--NYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA  234 (252)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHH--SCT--TEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred             CccHHHhHHHHHHHHHHHHHHHHHhhhhcccccceeeee--cCC--CeeEEEEEEEEEEEEeeccCCcceeccHhhhhhe
Confidence            46788998888  99999 99999999999999988753  333  4688999999999999999999999999999999


Q ss_pred             HHHHHHhchhhhhcCCc
Q psy2834         101 ETAILLLRIDDIVSGSK  117 (137)
Q Consensus       101 e~A~~ILrID~iI~~~~  117 (137)
                      ..+.++|..|..|...|
T Consensus       235 ~~~~~iL~te~~i~~~p  251 (252)
T d1kp8a1         235 SVAGLMITTECMVTDLP  251 (252)
T ss_dssp             HHHHHHHTEEEEEEECC
T ss_pred             eccceeEeecccccCCC
Confidence            99999999988887655