Psyllid ID: psy2835
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | 2.2.26 [Sep-21-2011] | |||||||
| Q7ZYC4 | 739 | Long-chain-fatty-acid--Co | N/A | N/A | 0.852 | 0.351 | 0.535 | 2e-77 | |
| Q5ZKR7 | 763 | Long-chain-fatty-acid--Co | yes | N/A | 0.872 | 0.348 | 0.488 | 4e-72 | |
| Q9V3S9 | 666 | Very long-chain-fatty-aci | yes | N/A | 0.862 | 0.394 | 0.483 | 2e-69 | |
| Q924N5 | 721 | Long-chain-fatty-acid--Co | yes | N/A | 0.960 | 0.406 | 0.458 | 2e-68 | |
| Q99PU5 | 721 | Long-chain-fatty-acid--Co | yes | N/A | 0.960 | 0.406 | 0.458 | 3e-68 | |
| Q4R4P9 | 724 | Long-chain-fatty-acid--Co | N/A | N/A | 0.960 | 0.404 | 0.465 | 2e-67 | |
| Q96GR2 | 724 | Long-chain-fatty-acid--Co | yes | N/A | 0.960 | 0.404 | 0.455 | 2e-66 | |
| Q2KHW5 | 726 | Long-chain-fatty-acid--Co | yes | N/A | 0.960 | 0.403 | 0.458 | 3e-66 | |
| Q5FVE4 | 666 | Long-chain-fatty-acid--Co | no | N/A | 0.813 | 0.372 | 0.484 | 7e-66 | |
| A1L1K7 | 667 | Long-chain-fatty-acid--Co | no | N/A | 0.852 | 0.389 | 0.421 | 3e-57 |
| >sp|Q7ZYC4|ACBG2_XENLA Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Xenopus laevis GN=acsbg2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 186/265 (70%), Gaps = 5/265 (1%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
AK F+KLGLERYH V I+GFN+ EWF +D+GAI+AGGFA G+YTTNS EAC + +A
Sbjct: 151 AKGFIKLGLERYHGVGILGFNSAEWFIADVGAIFAGGFAVGIYTTNSAEACHYVAQNCEA 210
Query: 99 NICVVEDDKQLEKILKVKAQCPKLKAIVQY--EGKPDKPGVISWDELMELGRAAPDESLD 156
NI VVE+ KQL+KIL+V+ Q P LKAI+QY E K +P + +W E M+LG+ PD LD
Sbjct: 211 NIIVVENQKQLQKILQVQDQLPHLKAIIQYKDELKEKRPNLYTWKEFMQLGKDIPDSQLD 270
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA---LSVISF 213
+++ + N+CCTL+YTSGT G K VMLSHDNIT+ AA + +L A V+S+
Sbjct: 271 QIISSQKPNQCCTLIYTSGTTGQPKGVMLSHDNITWTAAAAGKTVRLREATDLQEIVVSY 330
Query: 214 LPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273
LPLSHIAAQ +DI+ M +FA +ALKGSL TL EVRP F+ VPRVWEK+ EK
Sbjct: 331 LPLSHIAAQMIDIWLTMKYGGATYFAQPDALKGSLAITLREVRPTAFMGVPRVWEKMQEK 390
Query: 274 LMAVGKQTTGVKRWIANYAKSTSLQ 298
+ AVG +++ +KR +A +AK L+
Sbjct: 391 MKAVGAKSSTIKRKMATWAKGVGLE 415
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Xenopus laevis (taxid: 8355) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q5ZKR7|ACBG2_CHICK Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Gallus gallus GN=ACSBG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 133/272 (48%), Positives = 186/272 (68%), Gaps = 6/272 (2%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
AK+FLKL LER+H VCI+GFN+PEWF +D+GAI+AGG A G+YTTNSPEAC + A
Sbjct: 144 AKSFLKLVLERFHGVCILGFNSPEWFIADIGAIFAGGLAVGIYTTNSPEACHYVAENCSA 203
Query: 99 NICVVEDDKQ-LEKILKVKAQCPKLKAIVQY--EGKPDKPGVISWDELMELGRAAPDESL 155
NI VVE+ Q K L+++ + P +KAI+QY E K +P SW E ++LG PD L
Sbjct: 204 NILVVENHTQACRKSLEIEHKLPHMKAIIQYGEELKEKRPNQYSWREFLDLGEDIPDSQL 263
Query: 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS---VIS 212
++E+ N+CCTL+YTSGT G K VMLSHDN+T+ + + L A V+S
Sbjct: 264 REIIESQKPNQCCTLIYTSGTTGQPKGVMLSHDNLTWTSIAAGRSLMLLEATEKQELVVS 323
Query: 213 FLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272
+LPLSH+AAQ +DI+ +T ++FA +ALKG+L++TL EVRP FL VPRVWEKI E
Sbjct: 324 YLPLSHVAAQMIDIWLPVTFGGQVFFAQPDALKGTLVDTLREVRPTAFLGVPRVWEKIEE 383
Query: 273 KLMAVGKQTTGVKRWIANYAKSTSLQHYMAYL 304
K+ +VG +++ ++R +A++AK LQ + ++
Sbjct: 384 KMKSVGAKSSTLRRKVASWAKGVGLQTNLKWM 415
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Gallus gallus (taxid: 9031) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9V3S9|BGM_DROME Very long-chain-fatty-acid--CoA ligase bubblegum OS=Drosophila melanogaster GN=bgm PE=2 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/271 (48%), Positives = 185/271 (68%), Gaps = 8/271 (2%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+AKAF+KLGLE +HSV ++ FN EWFYS +GAI+A G AG+YTTNS +A H L +S
Sbjct: 89 VAKAFIKLGLEEHHSVGVLAFNCAEWFYSAMGAIHARGIIAGIYTTNSADAVQHVLESSH 148
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKP------GVISWDELMELGRAAP 151
A I VV+D KQ++KI ++ + PKLKA +Q + +P P G W E+ + +
Sbjct: 149 AQIVVVDDAKQMDKIHAIRDKLPKLKAAIQIQ-EPYSPYLKKEDGYYRWSEIESMNVSDV 207
Query: 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAALSV 210
++ LE +A NECC LVYTSGT G K VMLSHDNITF+ I++ ++ A S+
Sbjct: 208 EDQYMTRLENVAINECCCLVYTSGTVGMPKGVMLSHDNITFDVRGIVKAMDRVVVGAESI 267
Query: 211 ISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270
+S+LPLSH+AAQTVDIY+ VA +WFADK+ALKG+L+ +L + RP F+ VPRV+EK
Sbjct: 268 VSYLPLSHVAAQTVDIYTCAFVAGCIWFADKDALKGTLVKSLQDARPTRFMGVPRVYEKF 327
Query: 271 HEKLMAVGKQTTGVKRWIANYAKSTSLQHYM 301
E+++AV + +K+ +A++AK +L+HYM
Sbjct: 328 QERMVAVASSSGSLKKMLASWAKGITLKHYM 358
|
Mediates activation of very-long-chain fatty acids. Probably also able to mediate activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Drosophila melanogaster (taxid: 7227) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q924N5|ACBG1_RAT Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Rattus norvegicus GN=Acsbg1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/301 (45%), Positives = 194/301 (64%), Gaps = 8/301 (2%)
Query: 9 LERYHSVCIIGFNAPE-WFYSDLGAIY--AGGLAKAFLKLGLERYHSVCIIGFNAPEWFY 65
L++Y ++ +GF + W Y A +AK FLKLGLER HSV I+GFN+PEWF+
Sbjct: 110 LDKYGNLSALGFKRKDKWERISYYQYYLIARKVAKGFLKLGLERAHSVAILGFNSPEWFF 169
Query: 66 SDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAI 125
S +G ++AGG G+YTT+SPEAC + AN+ VV+ KQLEKILK+ P LKA+
Sbjct: 170 SAVGTVFAGGIVTGIYTTSSPEACQYIAHDCRANVIVVDTQKQLEKILKIWKDLPHLKAV 229
Query: 126 VQYEGKPDKP--GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
V Y+ P K V + +EL+ELG+ P+E+LD +++T N+CC LVYTSGT G K V
Sbjct: 230 VIYQEPPPKKMANVYTMEELIELGQEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGV 289
Query: 184 MLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
MLS DNIT+ A Q ++ A + V+S+LPLSHIAAQ D+++ + A + FAD
Sbjct: 290 MLSQDNITWTARYGSQAGDIQPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAD 349
Query: 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQHY 300
+ALKG+L+NTL EV P + VPRVWEKI E++ V Q+ ++R + +A S +L+
Sbjct: 350 PDALKGTLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQN 409
Query: 301 M 301
+
Sbjct: 410 L 410
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q99PU5|ACBG1_MOUSE Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Mus musculus GN=Acsbg1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 138/301 (45%), Positives = 194/301 (64%), Gaps = 8/301 (2%)
Query: 9 LERYHSVCIIGFNAPE-WFYSDLGAIY--AGGLAKAFLKLGLERYHSVCIIGFNAPEWFY 65
L++Y ++ +GF + W Y A +AK FLKLGLER HSV I+GFN+PEWF+
Sbjct: 110 LDKYGNLSALGFKRKDKWERISYYQYYLIARKVAKGFLKLGLERAHSVAILGFNSPEWFF 169
Query: 66 SDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAI 125
S +G ++AGG G+YTT+SPEAC + AN+ VV+ KQLEKILK+ P LKA+
Sbjct: 170 SAVGTVFAGGIVTGIYTTSSPEACQYISHDCRANVIVVDTQKQLEKILKIWKDLPHLKAV 229
Query: 126 VQYEGKPDKP--GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
V Y+ P K V + +EL+ELG+ P+E+LD +++T N+CC LVYTSGT G K V
Sbjct: 230 VIYQEPPPKKMANVYTMEELIELGQEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGV 289
Query: 184 MLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
MLS DNIT+ A Q ++ A + V+S+LPLSHIAAQ D+++ + A + FAD
Sbjct: 290 MLSQDNITWTARYGSQAGDIQPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAD 349
Query: 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQHY 300
+ALKG+L+NTL EV P + VPRVWEKI E++ V Q+ ++R + +A S +L+
Sbjct: 350 PDALKGTLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQN 409
Query: 301 M 301
+
Sbjct: 410 L 410
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q4R4P9|ACBG1_MACFA Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Macaca fascicularis GN=ACSBG1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/301 (46%), Positives = 191/301 (63%), Gaps = 8/301 (2%)
Query: 9 LERYHSVCIIGFNAPE-WFYSDLGAIY--AGGLAKAFLKLGLERYHSVCIIGFNAPEWFY 65
L++Y +GF + W + Y A AK FLKLGLER HSV I+GFN+PEWF+
Sbjct: 113 LDKYGDFSALGFKCQDKWEHISYSQYYLLARRAAKGFLKLGLERAHSVAILGFNSPEWFF 172
Query: 66 SDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAI 125
S +G ++AGG G+YTT+SPEAC + AN+ +V+ KQLEKILKV Q P LKA+
Sbjct: 173 SAVGTVFAGGIVTGIYTTSSPEACQYIAYDCCANVIMVDTQKQLEKILKVWKQLPHLKAV 232
Query: 126 VQY-EGKPDK-PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
V Y E P+K V + +E MELG P+E+LD +++T N+CC LVYTSGT G K V
Sbjct: 233 VIYKEPPPNKMANVYTMEEFMELGNEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGV 292
Query: 184 MLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
MLS DNIT+ A Q + A + V+S+LPLSHIAAQ D+++ + A + FA+
Sbjct: 293 MLSQDNITWTARYGSQAGDIRPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAE 352
Query: 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQHY 300
+ALKGSL+NTL EV P + VPRVWEKI E++ V Q+ ++R + +A S +L+
Sbjct: 353 PDALKGSLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQN 412
Query: 301 M 301
+
Sbjct: 413 L 413
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Macaca fascicularis (taxid: 9541) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q96GR2|ACBG1_HUMAN Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Homo sapiens GN=ACSBG1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/301 (45%), Positives = 192/301 (63%), Gaps = 8/301 (2%)
Query: 9 LERYHSVCIIGFNAPE-WFYSDLGAIY--AGGLAKAFLKLGLERYHSVCIIGFNAPEWFY 65
L++Y + +GF + W + Y A AK FLKLGL++ HSV I+GFN+PEWF+
Sbjct: 113 LDKYGDLIALGFKRQDKWEHISYSQYYLLARRAAKGFLKLGLKQAHSVAILGFNSPEWFF 172
Query: 66 SDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAI 125
S +G ++AGG G+YTT+SPEAC + AN+ +V+ KQLEKILK+ Q P LKA+
Sbjct: 173 SAVGTVFAGGIVTGIYTTSSPEACQYIAYDCCANVIMVDTQKQLEKILKIWKQLPHLKAV 232
Query: 126 VQY-EGKPDK-PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
V Y E P+K V + +E MELG P+E+LD +++T N+CC LVYTSGT G K V
Sbjct: 233 VIYKEPPPNKMANVYTMEEFMELGNEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGV 292
Query: 184 MLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
MLS DNIT+ A Q + A + V+S+LPLSHIAAQ D+++ + A + FA+
Sbjct: 293 MLSQDNITWTARYGSQAGDIRPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAE 352
Query: 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQHY 300
+ALKGSL+NTL EV P + VPRVWEKI E++ V Q+ ++R + +A S +L+
Sbjct: 353 PDALKGSLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQSGFIRRKMLLWAMSVTLEQN 412
Query: 301 M 301
+
Sbjct: 413 L 413
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Also able to activate very long-chain fatty acids; however, the relevance of such activity is unclear in vivo. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q2KHW5|ACBG1_BOVIN Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos taurus GN=ACSBG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (642), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/301 (45%), Positives = 186/301 (61%), Gaps = 8/301 (2%)
Query: 9 LERYHSVCIIGFNAP-EWFYSDLGAIY--AGGLAKAFLKLGLERYHSVCIIGFNAPEWFY 65
L++Y + +GF W + Y A AK FLKLGLER HSV I+ FN+PEWF+
Sbjct: 96 LDKYGDLSAMGFKRQGTWEHISYTQYYLLARKAAKGFLKLGLERAHSVAILAFNSPEWFF 155
Query: 66 SDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAI 125
S +GA++ GG G+YTT+SPEAC + ANI VV+ KQLEKILK+ P LKA+
Sbjct: 156 SAVGAVFGGGIITGIYTTSSPEACQYIAYDCRANIIVVDTQKQLEKILKIWKHLPHLKAV 215
Query: 126 VQYEGKP--DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
V Y P P V + +ELMELG P+E+LD ++ N+CC LVYTSGT G K V
Sbjct: 216 VIYREAPPMRMPSVYTMEELMELGNEVPEEALDVIINAQKPNQCCALVYTSGTTGNPKGV 275
Query: 184 MLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
MLS DNIT+ A Q ++ A + V+S+LPLSHIAAQ D+++ + A + FA+
Sbjct: 276 MLSQDNITWTARYGSQAGDIQPAEIQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAE 335
Query: 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQHY 300
+ALKGSL+NTL EV P + VPRVWEKI E++ V Q+ + R + +A S +L+
Sbjct: 336 PDALKGSLVNTLREVEPTSHMGVPRVWEKIMEQIQEVAAQSGFIWRKMLLWAMSVTLEQN 395
Query: 301 M 301
+
Sbjct: 396 L 396
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q5FVE4|ACBG2_HUMAN Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Homo sapiens GN=ACSBG2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
AK+ +KLGLER+H V I+GFN+ EWF + +GAI AGG G+Y TNS E C + + +
Sbjct: 94 AKSLIKLGLERFHGVGILGFNSAEWFITAVGAILAGGLCVGIYATNSAEVCQYVITHAKV 153
Query: 99 NICVVEDDKQLEKILKV-KAQCPKLKAIVQYEGKPDKPG-VISWDELMELGRAAPDESLD 156
NI +VE+D+QL+KIL + ++ LKAI+QY K + SWD+ MELGR+ PD L+
Sbjct: 154 NILLVENDQQLQKILSIPQSSLEPLKAIIQYRLPMKKNNNLYSWDDFMELGRSIPDTQLE 213
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPL 216
+V+E+ N+C L+YTSGT G K VMLSHDNIT+ A + + FKL +V+S+LPL
Sbjct: 214 QVIESQKANQCAVLIYTSGTTGIPKGVMLSHDNITWIAGAVTKDFKLTDKHETVVSYLPL 273
Query: 217 SHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA 276
SHIAAQ +DI+ + + A +FA +ALKG+L++TL EV+P VF+ VP++WEKIHE +
Sbjct: 274 SHIAAQMMDIWVPIKIGALTYFAQADALKGTLVSTLKEVKPTVFIGVPQIWEKIHEMVKK 333
Query: 277 VGKQTTGVKR 286
++ G+K+
Sbjct: 334 NSAKSMGLKK 343
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Also able to activate very long-chain fatty acids; however, the relevance of such activity is unclear in vivo. Has increased ability to activate oleic and linoleic acid. May play a role in spermatogenesis. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|A1L1K7|ACBG2_RAT Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Rattus norvegicus GN=Acsbg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/266 (42%), Positives = 171/266 (64%), Gaps = 6/266 (2%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
A++ +KLGL+R+H V I+GFN+ EW + LGAI AGG G+Y TNS EAC + + ++
Sbjct: 90 ARSLIKLGLQRFHGVGILGFNSVEWVVAALGAILAGGLCVGIYATNSAEACQYVIKQANV 149
Query: 99 NICVVEDDKQLEKILKVKA-QCPKLKAIVQYEGK--PDKPGVISWDELMELGRAAPDESL 155
N+ +VE+D+QL+KIL + + +KAIVQY + + SW + MELG A P+ L
Sbjct: 150 NVLIVENDQQLQKILSIPPDKMETVKAIVQYRLPLMENSTNLYSWQDFMELGNAIPNIQL 209
Query: 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI---IQYFKLESAALSVIS 212
DRV+ + N+C ++YTSGT G+ K VMLSHDNIT+ A + I+ + +++S
Sbjct: 210 DRVILSQKANQCAVIIYTSGTTGSPKGVMLSHDNITWTAGAMAREIELIHVSGKQDTIVS 269
Query: 213 FLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272
+LPLSHIAAQ +DI+ + V +FA +AL+G+L+ TL EV+P FL VPRVWEK+ +
Sbjct: 270 YLPLSHIAAQLMDIWIPIKVGVLTFFAQPDALRGTLVYTLQEVKPTYFLGVPRVWEKMQD 329
Query: 273 KLMAVGKQTTGVKRWIANYAKSTSLQ 298
+ +++ +++ +AK L+
Sbjct: 330 TIKENVAKSSNLRKKAFAWAKMLGLK 355
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Has increased ability to activate oleic and linoleic acid. May play a role in spermatogenesis. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | ||||||
| 328708315 | 693 | PREDICTED: long-chain-fatty-acid--CoA li | 0.862 | 0.379 | 0.623 | 1e-98 | |
| 345488807 | 663 | PREDICTED: very long-chain-fatty-acid--C | 0.865 | 0.398 | 0.615 | 2e-91 | |
| 328792515 | 656 | PREDICTED: long-chain-fatty-acid--CoA li | 0.852 | 0.396 | 0.596 | 4e-90 | |
| 380023570 | 686 | PREDICTED: LOW QUALITY PROTEIN: long-cha | 0.852 | 0.379 | 0.592 | 7e-90 | |
| 91076084 | 657 | PREDICTED: similar to AGAP008596-PA [Tri | 0.875 | 0.406 | 0.588 | 9e-89 | |
| 321474364 | 800 | hypothetical protein DAPPUDRAFT_314088 [ | 0.875 | 0.333 | 0.576 | 1e-88 | |
| 321474592 | 641 | hypothetical protein DAPPUDRAFT_187637 [ | 0.875 | 0.416 | 0.576 | 2e-88 | |
| 340708785 | 684 | PREDICTED: long-chain-fatty-acid--CoA li | 0.852 | 0.380 | 0.587 | 2e-86 | |
| 357622046 | 690 | hypothetical protein KGM_01876 [Danaus p | 0.875 | 0.386 | 0.577 | 2e-86 | |
| 350419227 | 684 | PREDICTED: long-chain-fatty-acid--CoA li | 0.852 | 0.380 | 0.583 | 1e-85 |
| >gi|328708315|ref|XP_001945956.2| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 164/263 (62%), Positives = 213/263 (80%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+AKAF+KLGLER+H VCIIGFN+PEWFYSDLGAIYAGGFAAGMYTTN +ACLHCL TS
Sbjct: 122 VAKAFIKLGLERFHGVCIIGFNSPEWFYSDLGAIYAGGFAAGMYTTNLVDACLHCLETSK 181
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
ANI VVED KQLEKIL +K++ P LKAI+QYEGKP + GV+SW+++M +G A D+ L+
Sbjct: 182 ANIAVVEDSKQLEKILSIKSRLPHLKAIIQYEGKPTEEGVLSWEDVMRIGSAESDDKLNA 241
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
+L+T+ NECCTLV+TSGTEGASK VM+SHDN+T+NA I + L ++S+LPLS
Sbjct: 242 ILKTMGVNECCTLVFTSGTEGASKAVMVSHDNLTYNAYVITNFLSLTDGKEVLVSYLPLS 301
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV 277
H+AAQ DIYS +++ A ++F +K+ALKGSL+NTL RP VFL VPRVWEKI+EKL+++
Sbjct: 302 HVAAQITDIYSAISIGAQVFFGEKDALKGSLVNTLQAARPTVFLGVPRVWEKINEKLVSI 361
Query: 278 GKQTTGVKRWIANYAKSTSLQHY 300
G+++ +K++IA++AK L HY
Sbjct: 362 GRKSGSLKKYIADWAKEVGLNHY 384
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345488807|ref|XP_001606071.2| PREDICTED: very long-chain-fatty-acid--CoA ligase bubblegum-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 206/265 (77%), Gaps = 1/265 (0%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+AKAFL LGLER+HSVCI+GFNAP+WF SD+ AIYAGGFAAG+YTTNSPEAC +C +S
Sbjct: 118 VAKAFLHLGLERHHSVCILGFNAPQWFISDIAAIYAGGFAAGIYTTNSPEACQYCAESSR 177
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
ANI VVED KQLEKIL++K PKLKAI+QY+G P V+SW+EL+E+G+ D+ L+
Sbjct: 178 ANIIVVEDAKQLEKILEIKKNLPKLKAIIQYDGIPSTKDVLSWNELLEIGQRQSDDQLET 237
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL-SVISFLPL 216
VL+TI NECCTLVYTSGT G K VML+HDN+ +A I+ L A +VISFLPL
Sbjct: 238 VLKTIGINECCTLVYTSGTVGNPKAVMLTHDNLLTDARAILAAGDLNREAQETVISFLPL 297
Query: 217 SHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA 276
SH+AAQ VDI++ M ++AT++FADKNALKGSL++TL+ RP FL VPRVWEKI+EK+ A
Sbjct: 298 SHVAAQVVDIFTCMLMSATVYFADKNALKGSLLDTLVAARPTAFLGVPRVWEKIYEKMQA 357
Query: 277 VGKQTTGVKRWIANYAKSTSLQHYM 301
V + +K WIAN+AK+ LQ+ +
Sbjct: 358 VARNNGPIKTWIANWAKAQGLQYNL 382
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328792515|ref|XP_624225.3| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 155/260 (59%), Positives = 201/260 (77%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+AKAFLKLGLERYH VCI+GFN+PEW +++LGAIYAGGFA G+YTTN+PEAC HC + S
Sbjct: 116 VAKAFLKLGLERYHGVCILGFNSPEWLFANLGAIYAGGFAVGIYTTNNPEACQHCAIISK 175
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
ANI VVE+ KQLEKIL++K P LK IVQYEGKP++ ++SW++L+++G A D L+
Sbjct: 176 ANIIVVENTKQLEKILQIKHNLPHLKVIVQYEGKPEEKDILSWNDLIKIGEAESDVKLNE 235
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
VL+TIA NECCTLV+TSGT G K VMLSHDN N + +L+ +++S+LPLS
Sbjct: 236 VLKTIAVNECCTLVFTSGTVGNPKAVMLSHDNFLSNVRSMSMALELKEGYETLVSYLPLS 295
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV 277
H+AAQ VDIY ++ +A T++FAD+NALKGSL+NTLL RP F+ VPRVWEKI+EK+ AV
Sbjct: 296 HVAAQVVDIYFMLYIAGTIYFADQNALKGSLVNTLLVARPTTFVGVPRVWEKIYEKMQAV 355
Query: 278 GKQTTGVKRWIANYAKSTSL 297
+K WIA++AKS +L
Sbjct: 356 AANNGFIKTWIASWAKSQAL 375
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380023570|ref|XP_003695591.1| PREDICTED: LOW QUALITY PROTEIN: long-chain-fatty-acid--CoA ligase ACSBG2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 154/260 (59%), Positives = 201/260 (77%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+A+AFLKLGLERYH VCI+GFN+PEW +++LGAIYAGGFA G+YTTN+PEAC HC V S
Sbjct: 115 VARAFLKLGLERYHGVCILGFNSPEWLFANLGAIYAGGFAVGIYTTNNPEACQHCAVISK 174
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
ANI VVE+ KQLEKIL++K P LK IVQYEGKP++ ++SW++L+++G A D L+
Sbjct: 175 ANIIVVENRKQLEKILQIKQNLPHLKVIVQYEGKPEQKDILSWNDLIKIGEAESDVKLNE 234
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
VL+TIA NECCTLV+TSGT G K VM+SHDN N + +L+ +++S+LPLS
Sbjct: 235 VLKTIAVNECCTLVFTSGTVGNPKAVMISHDNFLSNVRSLSNSLELKEGCETLVSYLPLS 294
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV 277
H+AAQ VD+Y ++ +A T++FAD+NALKGSLINTLL RP F+ VPRVWEKI+EK+ AV
Sbjct: 295 HVAAQVVDLYFMLYIAGTIYFADQNALKGSLINTLLMARPTTFVGVPRVWEKIYEKMQAV 354
Query: 278 GKQTTGVKRWIANYAKSTSL 297
+K WIA++AKS +L
Sbjct: 355 AANNGFIKTWIASWAKSQAL 374
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076084|ref|XP_967873.1| PREDICTED: similar to AGAP008596-PA [Tribolium castaneum] gi|270014586|gb|EFA11034.1| hypothetical protein TcasGA2_TC004625 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 332 bits (852), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 157/267 (58%), Positives = 200/267 (74%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
AKAF+KLGLER+H+VCI+GFN+PEWF SDL AI+AGG A G+YTTNS EAC HC S A
Sbjct: 87 AKAFIKLGLERHHAVCILGFNSPEWFISDLAAIFAGGIAVGIYTTNSSEACFHCANHSRA 146
Query: 99 NICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158
NI VV+D KQLEKIL +K++ P LKAI+QYEG P VISW++L+ +GR DE L+RV
Sbjct: 147 NIIVVQDQKQLEKILAIKSRLPHLKAIIQYEGTPTSADVISWEDLLIIGRDQEDEDLERV 206
Query: 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
L+TI NECCTLVYTSGT G K VMLSHDN+T++A I + ++ ++S+LPLSH
Sbjct: 207 LKTIGVNECCTLVYTSGTVGKPKAVMLSHDNLTWDALSICERLDVKKGEEVIVSYLPLSH 266
Query: 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG 278
+AAQ DIY M A ++FAD NALKGSLINTL E +P FL VPRVWEK+HEK+M V
Sbjct: 267 VAAQVTDIYIAMMYAVCIYFADANALKGSLINTLQEAQPTKFLGVPRVWEKMHEKMMQVA 326
Query: 279 KQTTGVKRWIANYAKSTSLQHYMAYLE 305
Q VK+ +A++AKS +L +++ ++
Sbjct: 327 AQNGRVKKSLASWAKSQALHYHLNRIK 353
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321474364|gb|EFX85329.1| hypothetical protein DAPPUDRAFT_314088 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 197/267 (73%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
AKAF++LGLER+HSVCI+GFN+PEW +DL AI+AGGFAAG+YTTNS EACLHC + A
Sbjct: 263 AKAFIRLGLERFHSVCILGFNSPEWIIADLAAIHAGGFAAGIYTTNSAEACLHCALNGQA 322
Query: 99 NICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158
+I VVED KQLEKIL +K Q P LKAIVQY GKP GVI+W +LM LG A PD +
Sbjct: 323 DIIVVEDRKQLEKILSIKDQIPTLKAIVQYTGKPHVEGVITWSQLMHLGNATPDNVYEDR 382
Query: 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
L+ +A N+CCTL+YTSGT G K VML+HDN+T+ + + Y L + +S+LPLSH
Sbjct: 383 LKKLAVNQCCTLIYTSGTTGPPKGVMLNHDNLTWISNNLATYMNLRDGKDTFLSYLPLSH 442
Query: 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG 278
+AAQ DIY+ ++V T++FAD + LKG+L TL EVRP F VPRVWEKI+EK+ A+G
Sbjct: 443 VAAQITDIYAPLSVGGTVYFADPDVLKGTLAETLREVRPTCFFGVPRVWEKIYEKMQAIG 502
Query: 279 KQTTGVKRWIANYAKSTSLQHYMAYLE 305
KQTTG+K+ IA ++KS L + +E
Sbjct: 503 KQTTGIKKTIATWSKSVGLSYNRRRME 529
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321474592|gb|EFX85557.1| hypothetical protein DAPPUDRAFT_187637 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 197/267 (73%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
AKAF++LGLER+HSVCI+GFN+PEW +DL AI+AGGFAAG+YTTNS EACLHC + A
Sbjct: 50 AKAFIRLGLERFHSVCILGFNSPEWIIADLAAIHAGGFAAGIYTTNSAEACLHCALNGQA 109
Query: 99 NICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158
+I VVED KQLEKIL +K Q P LKAIVQY GKP GVI+W +LM LG A PD +
Sbjct: 110 DIIVVEDRKQLEKILSIKDQIPTLKAIVQYTGKPHVEGVITWSQLMHLGNATPDNVYEDR 169
Query: 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
L+ +A N+CCTL+YTSGT G K VML+HDN+T+ + + Y L + +S+LPLSH
Sbjct: 170 LKKLAVNQCCTLIYTSGTTGPPKGVMLNHDNLTWISHNLATYMNLRDGKDTFLSYLPLSH 229
Query: 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG 278
+AAQ DIY+ ++V T++FAD + LKG+L TL EVRP F VPRVWEKI+EK+ A+G
Sbjct: 230 VAAQITDIYAPLSVGGTVYFADPDVLKGTLAETLREVRPTCFFGVPRVWEKIYEKMQAIG 289
Query: 279 KQTTGVKRWIANYAKSTSLQHYMAYLE 305
KQTTG+K+ IA ++KS L + +E
Sbjct: 290 KQTTGIKKTIATWSKSVGLSYNRRRME 316
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340708785|ref|XP_003393002.1| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/264 (58%), Positives = 202/264 (76%), Gaps = 4/264 (1%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+AKAFLKLGLER+H VCI+GFN+PEW +S+LGAIYAGG A G+Y TN+P+AC HCL S
Sbjct: 114 VAKAFLKLGLERFHGVCILGFNSPEWLFSNLGAIYAGGIAVGIYATNTPDACQHCLQISQ 173
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
ANI VVED KQLEKIL+++ P LKAI+QY G P++ V+SW++L+++G A D+ L+
Sbjct: 174 ANIVVVEDSKQLEKILQIRHNLPHLKAIIQYTGTPNEKDVLSWNDLIKIGEAESDDKLNE 233
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
+L+ IATNECCTLV+TSGT G K VMLSHDN+ +N + + FK ++A +IS+LPLS
Sbjct: 234 ILKRIATNECCTLVFTSGTVGYPKAVMLSHDNLIYNVRSMNRVFKFKTACEHIISYLPLS 293
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV 277
H+AAQ +DIY + + ATL FAD+NALKGSLINTLLEVRP +F+ VPRVWEKI+ KL +
Sbjct: 294 HVAAQAIDIYYSIYIVATLHFADRNALKGSLINTLLEVRPTIFVGVPRVWEKIYSKLQS- 352
Query: 278 GKQTTG-VKRWIANYAKSTSLQHY 300
+ TG +K I ++A S HY
Sbjct: 353 -EVNTGFIKTCIVSWATSQGY-HY 374
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357622046|gb|EHJ73666.1| hypothetical protein KGM_01876 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 156/270 (57%), Positives = 204/270 (75%), Gaps = 3/270 (1%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+AKAFLK+GLER+HSVCI+GFN+ EW+ +DL AI+AGG+AAG+YTTNS EAC HCL +S
Sbjct: 92 IAKAFLKIGLERFHSVCILGFNSEEWYIADLAAIHAGGYAAGIYTTNSAEACFHCLESSR 151
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK--PGVISWDELMELGRAAPDESL 155
ANIC V+D KQL+KIL ++ + LKAIVQ+EG D PGV SWD+LME+G PD L
Sbjct: 152 ANICAVQDKKQLDKILSIQGRLKHLKAIVQWEGPVDTSVPGVYSWDQLMEMGAKEPDTQL 211
Query: 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY-FKLESAALSVISFL 214
+ +L++IA NECCTLVYTSGT G K VMLSHDN+T++A I + L+ ++S+L
Sbjct: 212 NNILKSIAVNECCTLVYTSGTVGPPKAVMLSHDNLTWDAFAISERCGDLKPTLDKIVSYL 271
Query: 215 PLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKL 274
PLSH+AAQ VDIY+ +T A ++FA +ALKG+L+ TL EVRP FLAVPRVWEK+HEK+
Sbjct: 272 PLSHVAAQVVDIYATLTNAIEVYFARPDALKGTLVETLREVRPTRFLAVPRVWEKMHEKI 331
Query: 275 MAVGKQTTGVKRWIANYAKSTSLQHYMAYL 304
MAVG + K+ IA +AK +H++A +
Sbjct: 332 MAVGAANSSFKKSIAMWAKEKGTKHHLARI 361
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350419227|ref|XP_003492112.1| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like isoform 1 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 154/264 (58%), Positives = 201/264 (76%), Gaps = 4/264 (1%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+AKAF+K GLER+H VCI+GFN+PEW +S+LGAIYAGG A G+YTTN+P+AC HCL TS
Sbjct: 114 VAKAFIKFGLERFHGVCILGFNSPEWLFSNLGAIYAGGIAVGIYTTNTPDACQHCLQTSQ 173
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
ANI VVED KQLEKIL+++ P LKAI+QY G P++ V+SW++L+++G A D+ L+
Sbjct: 174 ANIVVVEDSKQLEKILQIRHNLPHLKAIIQYTGTPNEKDVLSWNDLIKIGEAESDDKLNE 233
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
+L+ IATNECCTLV+TSGT G K VMLSHDN+ N + + FK ++A +IS+LPLS
Sbjct: 234 ILKRIATNECCTLVFTSGTVGYPKAVMLSHDNLIHNVRSMNRTFKFKTAYQHIISYLPLS 293
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV 277
H+AAQ +DIY + ATL FAD+NALKGSL+NTLLEVRP +F+ VPRVWEKI+ KL +
Sbjct: 294 HVAAQIIDIYYCIYTVATLHFADRNALKGSLVNTLLEVRPTIFVGVPRVWEKIYFKLQS- 352
Query: 278 GKQTTG-VKRWIANYAKSTSLQHY 300
+ TG +K I ++A S HY
Sbjct: 353 -EINTGFIKSSIVSWATSQGY-HY 374
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 305 | ||||||
| UNIPROTKB|F1NI43 | 700 | ACSBG2 "Long-chain-fatty-acid- | 0.842 | 0.367 | 0.488 | 2.8e-80 | |
| ZFIN|ZDB-GENE-030131-7099 | 794 | acsbg2 "acyl-CoA synthetase bu | 0.845 | 0.324 | 0.520 | 2e-79 | |
| UNIPROTKB|Q5ZKR7 | 763 | ACSBG2 "Long-chain-fatty-acid- | 0.842 | 0.336 | 0.479 | 1.4e-76 | |
| FB|FBgn0027348 | 666 | bgm "bubblegum" [Drosophila me | 0.826 | 0.378 | 0.477 | 1.6e-71 | |
| UNIPROTKB|F1NLD6 | 643 | ACSBG1 "Uncharacterized protei | 0.822 | 0.390 | 0.464 | 7.7e-70 | |
| ZFIN|ZDB-GENE-110914-219 | 674 | acsbg1 "acyl-CoA synthetase bu | 0.816 | 0.369 | 0.480 | 3.7e-68 | |
| UNIPROTKB|Q5FVE4 | 666 | ACSBG2 "Long-chain-fatty-acid- | 0.783 | 0.358 | 0.477 | 6e-68 | |
| UNIPROTKB|F1SBT8 | 674 | ACSBG2 "Uncharacterized protei | 0.822 | 0.372 | 0.461 | 1.6e-67 | |
| UNIPROTKB|F1PS77 | 671 | ACSBG2 "Uncharacterized protei | 0.822 | 0.374 | 0.431 | 3.7e-66 | |
| UNIPROTKB|E1BCN4 | 678 | ACSBG2 "Uncharacterized protei | 0.819 | 0.368 | 0.444 | 6.8e-65 |
| UNIPROTKB|F1NI43 ACSBG2 "Long-chain-fatty-acid--CoA ligase ACSBG2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 128/262 (48%), Positives = 182/262 (69%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
ER+H VCI+GFN+PEWF +D+GAI+AGG A G+YTTNSPEAC + ANI VVE+
Sbjct: 92 ERFHGVCILGFNSPEWFIADIGAIFAGGLAVGIYTTNSPEACHYVAENCSANILVVENHT 151
Query: 108 QLEKILKVKAQCPKLKAIVQY--EGKPDKPGVISWDELMELGRAAPDESLDRVLETIATN 165
QL+KIL+++ + P +KAI+QY E K +P + SW E ++LG PD L ++E+ N
Sbjct: 152 QLQKILEIEHKLPHMKAIIQYGEELKEKRPNLYSWREFLDLGEDVPDSQLREIIESQKPN 211
Query: 166 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQ 222
+CCTL+YTSGT G K VMLSHDN+T+ + + L A V+S+LPLSH+AAQ
Sbjct: 212 QCCTLIYTSGTTGQPKGVMLSHDNLTWTSIAAGRSLMLLEATEKQELVVSYLPLSHVAAQ 271
Query: 223 TVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTT 282
+DI+ +T ++FA +ALKG+L++TL EVRP FL VPRVWEKI EK+ +VG +++
Sbjct: 272 MIDIWLPVTFGGQVFFAQPDALKGTLVDTLREVRPTAFLGVPRVWEKIEEKMKSVGAKSS 331
Query: 283 GVKRWIANYAKSTSLQHYMAYL 304
++R +A++AK LQ + ++
Sbjct: 332 TLRRKVASWAKGVGLQTNLKWM 353
|
|
| ZFIN|ZDB-GENE-030131-7099 acsbg2 "acyl-CoA synthetase bubblegum family member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 137/263 (52%), Positives = 180/263 (68%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
ERYH V I+GFN+ EWF +D+ AI AGGFA G+YTTNSPEAC + ANI VVE+ K
Sbjct: 211 ERYHGVGILGFNSTEWFIADIAAILAGGFAVGIYTTNSPEACQYVAENCQANILVVENHK 270
Query: 108 QLEKILKVKAQCPKLKAIVQY--EGKPDKPGVISWDELMELGRAAPDESLDRVLETIATN 165
QL+KIL+++ + P LKAI+QY E K KP + +W E MELGR PD LD ++ + N
Sbjct: 271 QLQKILQIQDKLPHLKAIIQYKDELKEKKPNLYTWAEFMELGRDEPDTQLDDIISSQKPN 330
Query: 166 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA-ALS--VISFLPLSHIAAQ 222
+CCTL+YTSGT G K VMLSHDN+T+ A Q+ L A L V+S+LPLSHIAAQ
Sbjct: 331 QCCTLIYTSGTTGQPKGVMLSHDNLTWTAVATSQHVSLNDADKLQEVVVSYLPLSHIAAQ 390
Query: 223 TVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTT 282
+DI+ M +FA +ALKGSL NTL E+RP FL VPRVWEK+ EK+ ++G +++
Sbjct: 391 MIDIWLPMKAGGVTYFAQPDALKGSLANTLREIRPTAFLGVPRVWEKMQEKMKSIGAKSS 450
Query: 283 GVKRWIANYAKSTSLQHYMAYLE 305
V+R +A++AK LQ + +E
Sbjct: 451 TVRRKVASWAKDVGLQTNLNKME 473
|
|
| UNIPROTKB|Q5ZKR7 ACSBG2 "Long-chain-fatty-acid--CoA ligase ACSBG2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 126/263 (47%), Positives = 178/263 (67%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
ER+H VCI+GFN+PEWF +D+GAI+AGG A G+YTTNSPEAC + ANI VVE+
Sbjct: 153 ERFHGVCILGFNSPEWFIADIGAIFAGGLAVGIYTTNSPEACHYVAENCSANILVVENHT 212
Query: 108 QL-EKILKVKAQCPKLKAIVQY--EGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 164
Q K L+++ + P +KAI+QY E K +P SW E ++LG PD L ++E+
Sbjct: 213 QACRKSLEIEHKLPHMKAIIQYGEELKEKRPNQYSWREFLDLGEDIPDSQLREIIESQKP 272
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAA 221
N+CCTL+YTSGT G K VMLSHDN+T+ + + L A V+S+LPLSH+AA
Sbjct: 273 NQCCTLIYTSGTTGQPKGVMLSHDNLTWTSIAAGRSLMLLEATEKQELVVSYLPLSHVAA 332
Query: 222 QTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQT 281
Q +DI+ +T ++FA +ALKG+L++TL EVRP FL VPRVWEKI EK+ +VG ++
Sbjct: 333 QMIDIWLPVTFGGQVFFAQPDALKGTLVDTLREVRPTAFLGVPRVWEKIEEKMKSVGAKS 392
Query: 282 TGVKRWIANYAKSTSLQHYMAYL 304
+ ++R +A++AK LQ + ++
Sbjct: 393 STLRRKVASWAKGVGLQTNLKWM 415
|
|
| FB|FBgn0027348 bgm "bubblegum" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 125/262 (47%), Positives = 177/262 (67%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
E +HSV ++ FN EWFYS +GAI+A G AG+YTTNS +A H L +S A I VV+D K
Sbjct: 99 EEHHSVGVLAFNCAEWFYSAMGAIHARGIIAGIYTTNSADAVQHVLESSHAQIVVVDDAK 158
Query: 108 QLEKILKVKAQCPKLKAIVQYEGKPDKP------GVISWDELMELGRA-APDESLDRVLE 160
Q++KI ++ + PKLKA +Q + +P P G W E+ + + D+ + R LE
Sbjct: 159 QMDKIHAIRDKLPKLKAAIQIQ-EPYSPYLKKEDGYYRWSEIESMNVSDVEDQYMTR-LE 216
Query: 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAALSVISFLPLSHI 219
+A NECC LVYTSGT G K VMLSHDNITF+ I++ ++ A S++S+LPLSH+
Sbjct: 217 NVAINECCCLVYTSGTVGMPKGVMLSHDNITFDVRGIVKAMDRVVVGAESIVSYLPLSHV 276
Query: 220 AAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGK 279
AAQTVDIY+ VA +WFADK+ALKG+L+ +L + RP F+ VPRV+EK E+++AV
Sbjct: 277 AAQTVDIYTCAFVAGCIWFADKDALKGTLVKSLQDARPTRFMGVPRVYEKFQERMVAVAS 336
Query: 280 QTTGVKRWIANYAKSTSLQHYM 301
+ +K+ +A++AK +L+HYM
Sbjct: 337 SSGSLKKMLASWAKGITLKHYM 358
|
|
| UNIPROTKB|F1NLD6 ACSBG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 119/256 (46%), Positives = 171/256 (66%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
ER+HSV I+GFN+PEWF S +GA++AGG G+YTTNSPEAC + S NI VVE+ K
Sbjct: 76 ERFHSVAILGFNSPEWFISAVGAVFAGGIVTGIYTTNSPEACHYIAYDSKTNIMVVENRK 135
Query: 108 QLEKILKVKAQCPKLKAIVQYEGK--PDKPGVISWDELMELGRAAPDESLDRVLETIATN 165
QL+KI+++ + P LKA+V Y+ P + + +E ++LG D +LD ++ + N
Sbjct: 136 QLDKIMQIWNRLPHLKAVVLYKDSILERHPNLYTMEEFLKLGDDISDVTLDDIINSQKPN 195
Query: 166 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL---SVISFLPLSHIAAQ 222
+CC L+YTSGT G K MLSHDNIT+ +A + ++ A + S++S+LPLSHIAAQ
Sbjct: 196 QCCVLIYTSGTTGKPKGAMLSHDNITWTSAHCSRAGDMQPAEVQQESIVSYLPLSHIAAQ 255
Query: 223 TVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTT 282
D+++ + ++FA+ +ALKGSLINTL EV+P + VPRVWEKI EKL Q+
Sbjct: 256 IYDLWTGIKWGEQVYFAEPDALKGSLINTLKEVQPTSHMGVPRVWEKIMEKLKDASAQSG 315
Query: 283 GVKRWIANYAKSTSLQ 298
VK+ + ++A S SL+
Sbjct: 316 FVKKKMLSWAMSVSLE 331
|
|
| ZFIN|ZDB-GENE-110914-219 acsbg1 "acyl-CoA synthetase bubblegum family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 123/256 (48%), Positives = 168/256 (65%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
E++H V I+GFN+ EWF + +G ++AGG AG+YTTNSP+ACLH S AN+ VVE+ K
Sbjct: 108 EQFHGVAILGFNSAEWFIAAVGTVFAGGIMAGIYTTNSPDACLHVANDSRANVIVVENQK 167
Query: 108 QLEKILKVKAQCPKLKAIVQYEG--KPDKPGVISWDELMELGRAAPDESLDRVLETIATN 165
QL+KI++VK + P LKAIVQY G K + SW+E MELG D LD V+ N
Sbjct: 168 QLDKIMQVKDKLPHLKAIVQYSGSLKEKLANLYSWEEFMELGLEVSDHELDEVISKQRAN 227
Query: 166 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL---SVISFLPLSHIAAQ 222
+CC L+YTSGT G+ K VMLSHDNIT+ A + ++ A + S++S+LPLSHIAAQ
Sbjct: 228 QCCVLIYTSGTTGSPKGVMLSHDNITWTAHHASRAGDMQPAEIRQESLVSYLPLSHIAAQ 287
Query: 223 TVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTT 282
D+++ + + FA +ALKG+L+++L EV P + VPRVWEKI EK+ G
Sbjct: 288 IYDLWTGIKWGEQISFAQPDALKGTLVDSLREVTPTAHMGVPRVWEKIMEKIKE-GISRC 346
Query: 283 G-VKRWIANYAKSTSL 297
G +KR + +A S SL
Sbjct: 347 GYMKRKMVTWAMSVSL 362
|
|
| UNIPROTKB|Q5FVE4 ACSBG2 "Long-chain-fatty-acid--CoA ligase ACSBG2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 115/241 (47%), Positives = 165/241 (68%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
ER+H V I+GFN+ EWF + +GAI AGG G+Y TNS E C + + + NI +VE+D+
Sbjct: 103 ERFHGVGILGFNSAEWFITAVGAILAGGLCVGIYATNSAEVCQYVITHAKVNILLVENDQ 162
Query: 108 QLEKILKV-KAQCPKLKAIVQYEGKPDKPG-VISWDELMELGRAAPDESLDRVLETIATN 165
QL+KIL + ++ LKAI+QY K + SWD+ MELGR+ PD L++V+E+ N
Sbjct: 163 QLQKILSIPQSSLEPLKAIIQYRLPMKKNNNLYSWDDFMELGRSIPDTQLEQVIESQKAN 222
Query: 166 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVD 225
+C L+YTSGT G K VMLSHDNIT+ A + + FKL +V+S+LPLSHIAAQ +D
Sbjct: 223 QCAVLIYTSGTTGIPKGVMLSHDNITWIAGAVTKDFKLTDKHETVVSYLPLSHIAAQMMD 282
Query: 226 IYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVK 285
I+ + + A +FA +ALKG+L++TL EV+P VF+ VP++WEKIHE + ++ G+K
Sbjct: 283 IWVPIKIGALTYFAQADALKGTLVSTLKEVKPTVFIGVPQIWEKIHEMVKKNSAKSMGLK 342
Query: 286 R 286
+
Sbjct: 343 K 343
|
|
| UNIPROTKB|F1SBT8 ACSBG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
Identities = 119/258 (46%), Positives = 173/258 (67%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
E +HSV I+GFN+ EW + LGAI AGGF G+Y TNS +AC + + + NI +VE+D
Sbjct: 106 EPFHSVGILGFNSVEWLIAALGAILAGGFCVGIYATNSTDACQYVITHAKVNILIVENDM 165
Query: 108 QLEKILKV-KAQCPKLKAIVQYEG--KPDKPG-VISWDELMELGRAAPDESLDRVLETIA 163
QL+KIL + K++ LKAI+QY+ K K + SWD+ MELGR+ PD LD+++
Sbjct: 166 QLQKILAIPKSRMETLKAIIQYKVPVKESKSNNLYSWDDFMELGRSIPDAQLDQIIRNQK 225
Query: 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIA 220
N+C ++YTSGT G K VMLSHDNIT+ A + + L A V+S+LPLSHIA
Sbjct: 226 ANQCAVIIYTSGTIGNPKGVMLSHDNITWMAGAAAREYNLAYACERQEVVVSYLPLSHIA 285
Query: 221 AQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ 280
AQ +D++ M V A ++FA NALKG+L+NTL EV+P FL VPR+WEK+HEK+ +
Sbjct: 286 AQMMDVWIPMKVGAFIYFAQPNALKGTLVNTLQEVKPTAFLGVPRIWEKMHEKIKEAIDK 345
Query: 281 TTGVKRWIANYAKSTSLQ 298
++ +++ + ++A++T +
Sbjct: 346 SSSLRKKVFSWARTTGFK 363
|
|
| UNIPROTKB|F1PS77 ACSBG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 111/257 (43%), Positives = 171/257 (66%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
+R+H V I+GFN+ EW + LGAI AGG G+Y TNS +AC + + + N+ +VE+D
Sbjct: 104 QRFHGVGILGFNSVEWLIASLGAILAGGLCVGIYATNSADACQYVITNAKVNVLLVENDL 163
Query: 108 QLEKILKV-KAQCPKLKAIVQYE--GKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 164
QL+KIL + +++ LKAI+QY+ K + SW++ MELG + PD LD+++E+
Sbjct: 164 QLQKILSIPQSRMETLKAIIQYKLPVKESNNNLYSWNDFMELGNSIPDSQLDQIIESQRA 223
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAA 221
N+C ++YTSGT G K VMLSHDNIT+ A + + L +AA V+S+LPLSH+AA
Sbjct: 224 NQCAVIIYTSGTLGNPKGVMLSHDNITWTAGAVAKNCSLSNAAEKQEVVVSYLPLSHVAA 283
Query: 222 QTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQT 281
Q +D++ M + A ++FA +AL G+LINTLLEV+P FL VPR+WEK+ EK+ G +
Sbjct: 284 QMMDVWIPMKIGAFIYFAQPDALTGTLINTLLEVKPTAFLGVPRIWEKMQEKIKESGAKC 343
Query: 282 TGVKRWIANYAKSTSLQ 298
+ +++ + ++ + L+
Sbjct: 344 SSLRKKVFSWGRIIGLK 360
|
|
| UNIPROTKB|E1BCN4 ACSBG2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 115/259 (44%), Positives = 174/259 (67%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107
E +HSV I+GFN+ EW + LGAI+AGGF G+Y TN +AC + + + NI ++E++
Sbjct: 110 EPFHSVGILGFNSIEWILAALGAIFAGGFCVGIYATNFADACEYVITHAKVNILLLENNA 169
Query: 108 QLEKILKVKA-QCPKLKAIVQYEGKPDKP---GVISWDELMELGRAAPDESLDRVLETIA 163
QL+KIL + + LKAIVQY+ D + SWD+ +ELG + PD LD+++++
Sbjct: 170 QLQKILSIPMNKMETLKAIVQYKPPVDDSKCENLYSWDDFLELGSSIPDAQLDQIIKSQK 229
Query: 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIA 220
N+C ++YTSGT G K VMLSHDNIT+ A + + L A V+S+LPLSHIA
Sbjct: 230 ANQCAVIIYTSGTTGQPKGVMLSHDNITWTAGSVAKECNLAYAPEKQEVVVSYLPLSHIA 289
Query: 221 AQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM-AVGK 279
AQ +D++ + V A ++FA+ +ALKG+L+NTL EV+P FL VPR+WEK+HEK+ AVGK
Sbjct: 290 AQMMDVWVPIKVGAFIYFAEPDALKGTLVNTLQEVKPTAFLGVPRIWEKMHEKIKEAVGK 349
Query: 280 QTTGVKRWIANYAKSTSLQ 298
++ +++ + +A++ L+
Sbjct: 350 SSS-LRKKVFLWARNIGLK 367
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 305 | |||
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-131 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 9e-53 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 3e-50 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 3e-33 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-31 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 8e-29 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 5e-24 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 3e-22 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-20 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 9e-19 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-17 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 6e-17 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-15 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 2e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-13 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-12 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 3e-11 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-10 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 4e-10 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 5e-10 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 5e-10 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 8e-10 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 4e-09 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 8e-09 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-08 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 1e-08 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-08 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 2e-08 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 2e-08 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-08 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 7e-08 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 7e-08 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 8e-08 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 7e-07 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 7e-07 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 2e-06 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 2e-06 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-06 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 5e-06 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 9e-06 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-05 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-05 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-05 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-05 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 2e-05 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-05 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-05 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 3e-05 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-05 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 4e-05 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 5e-05 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 5e-05 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 6e-05 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 6e-05 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 6e-05 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 8e-05 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-04 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 1e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 1e-04 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-04 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 2e-04 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-04 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 3e-04 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 4e-04 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-04 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 4e-04 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 5e-04 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.001 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 0.001 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 0.002 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 0.002 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 0.002 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 0.002 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 0.003 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 0.003 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 0.004 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 386 bits (993), Expect = e-131
Identities = 149/267 (55%), Positives = 197/267 (73%), Gaps = 3/267 (1%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
AKAFLKLGLER+HSV I+GFN+PEWF + +GAI+AGG A G+YTTNSPEAC + TS+A
Sbjct: 22 AKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSPEACQYVAETSEA 81
Query: 99 NICVVEDDKQLEKILKVKAQCPKLKAIVQYEG--KPDKPGVISWDELMELGRAAPDESLD 156
NI VV++ KQL+KIL ++ Q P LKAI+QY K +P + SW E MELGR+ PDE LD
Sbjct: 82 NILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLYSWKEFMELGRSIPDEQLD 141
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL-ESAALSVISFLP 215
++E+ N+CCTL+YTSGT G K VMLSHDNIT+ A +++ L SV+S+LP
Sbjct: 142 AIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQESVVSYLP 201
Query: 216 LSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM 275
LSHIAAQ +DI+ ++V ++FA +ALKG+L+ TL EVRP F+ VPRVWEKI E++
Sbjct: 202 LSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRPTAFMGVPRVWEKIQERMK 261
Query: 276 AVGKQTTGVKRWIANYAKSTSLQHYMA 302
AVG ++TG+KR IA++AK L+ +
Sbjct: 262 AVGAKSTGLKRKIASWAKGVGLETNLK 288
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 178 bits (455), Expect = 9e-53
Identities = 79/266 (29%), Positives = 115/266 (43%), Gaps = 62/266 (23%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
+++L LA + LG++ V I+ N PEW +DL + AG +Y T+SP
Sbjct: 8 WAELAER-VRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSSP 66
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
E + L S A + VE DKP
Sbjct: 67 EEVAYILNDSGARVVFVE----------------------------DKP----------- 87
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
++ TL+YTSGT G K VML+H N+ AA +++ L S
Sbjct: 88 ------------------DDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPL-SP 128
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRV 266
V+SFLPL+H+ Q + Y ++ A + FA+ +L+ L EVRP VF AVPRV
Sbjct: 129 GDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAES---PETLLEDLREVRPTVFFAVPRV 185
Query: 267 WEKIHEKLMAVGKQTTGVKRWIANYA 292
WEKI+ + A +KR + +A
Sbjct: 186 WEKIYAGIEAKVAAAGPLKRKLFRWA 211
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 3e-50
Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 14/280 (5%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L LA L LG+ V I N PEW +DL + G + +Y+T++P
Sbjct: 48 YRELYER-VRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTP 106
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV----QYEGKPDKPGVISWDE 142
E + L S++ + VE+ + L+ +L V CPK+ ++ + + +
Sbjct: 107 EQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE-AKALVLEV 165
Query: 143 LMELGRAAPDESLDRVLETIAT---NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ 199
+ G + + IA ++ T++YTSGT G K VML+H N+ A I +
Sbjct: 166 FPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDE 225
Query: 200 YFKLESAALSVISFLPLSHIAAQTVDIYSVMTV-AATLWFADKNALKGSLINTLLEVRPH 258
V+SFLPL+HI + + + L+ D L L EVRP
Sbjct: 226 VLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLE----DLKEVRPT 281
Query: 259 VFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQ 298
V + VPRVWEK+++ +M + V+R + +A + +
Sbjct: 282 VMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK 321
|
Length = 613 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-33
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 38/264 (14%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+ LGL+ + I N PEW ++ +Y T EA + L ++
Sbjct: 18 IGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGEEAIEYILNETE 77
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
+I + K V S++EL ELG+
Sbjct: 78 ISIVFCDAVK-----------------------------VYSFEELEELGKKNKVPPTPP 108
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAALSVISFLPL 216
E + T++YTSGT G K VML+H NI A I + + IS+LPL
Sbjct: 109 KPEDL-----ATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPL 163
Query: 217 SHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA 276
+HI + V+ + + + + + L + E++P VF+ VPRV ++I++ ++A
Sbjct: 164 AHIFERVVENV-CLYIGGRIGYYSGDTRG--LKGDIKELKPTVFVGVPRVLDRIYKGILA 220
Query: 277 VGKQTTGVKRWIANYAKSTSLQHY 300
G+KR + N+A + L
Sbjct: 221 KVNAKGGLKRTLFNFAYNYKLAAL 244
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-31
Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 12/261 (4%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L A LA A LG+ V I+ N+PEW + L + AG + +
Sbjct: 2 YRELDE-RANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
E + L S+A + + DD+ L K+L+V + L A++ + ++ + L
Sbjct: 61 ERLAYILEDSEAKVLIT-DDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGA 119
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
P +D ++ ++YTSGT G K VML+H N+ AA + + F L +
Sbjct: 120 SAEPPAPPVDP-------DDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL-TP 171
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLL-EVRPHVFLAVPR 265
V+ LPL + +I+ + TL K L + + L+ + + V VP
Sbjct: 172 GDRVLLLLPLHFDGS-VWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPT 230
Query: 266 VWEKIHEKLMAVGKQTTGVKR 286
+ + + + ++
Sbjct: 231 LLRLLLKAPEEKKYDLSSLRL 251
|
Length = 412 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 8e-29
Identities = 71/241 (29%), Positives = 101/241 (41%), Gaps = 17/241 (7%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+A A LGLE + I+ N EW +DL AG + +Y T + E + L SD
Sbjct: 19 IAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETIRYVLEHSD 78
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
A V K L+ +KA P+ + WD+L+
Sbjct: 79 AKALFV--GK-LDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLAAT-EPLQGRPLP 134
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
E +A T+VYTSGT G K VMLS F A I+ L ++S+LPL+
Sbjct: 135 EPEDLA-----TIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPND-RLLSYLPLA 188
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEK----IHEK 273
HIA + + + A ++F + + L RP VF +VPR+W K I K
Sbjct: 189 HIAERVIVEGGSLYSGAEVFFVES---LDTFAADLQRARPTVFFSVPRLWTKFQQGILAK 245
Query: 274 L 274
L
Sbjct: 246 L 246
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 10/243 (4%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L A LA A LG++ V I+ N+PE+ + L A+ AG A + +P
Sbjct: 41 YRELDR-RANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
+ L + A + + + + V P + ++ D+ I+ + L
Sbjct: 100 RELAYILNDAGAKVLIT-SAEFAALLEAVAEALPVVLVVLLVGDADDRLP-ITLEALAAE 157
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-S 205
G ++ + +A L+YTSGT G K V+L+H N+ NAA I +
Sbjct: 158 GPGPDADARPVDPDDLAF-----LLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLT 212
Query: 206 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGS-LINTLLEVRPHVFLAVP 264
V+S+LPL HI V + + + TL ++ + + + V VP
Sbjct: 213 PDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVP 272
Query: 265 RVW 267
Sbjct: 273 TFL 275
|
Length = 534 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 71/271 (26%), Positives = 118/271 (43%), Gaps = 39/271 (14%)
Query: 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA----CLHCLVTS 96
++ G+ + V + N PEW D + +Y T P+A H V
Sbjct: 94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEV-- 151
Query: 97 DANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK----PDKPG-----VISWDELMELG 147
A I V L +L ++ P ++ IV G P P ++++ +L+ G
Sbjct: 152 -AAIFCVPQ--TLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQG 208
Query: 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 207
R++P E +AT + YTSGT G K V+L+H N+ N A K +
Sbjct: 209 RSSPQPFRPPKPEDVAT-----ICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSD 263
Query: 208 LSVISFLPLSHIAAQTVDIYSVMTVAATLW------FADKNALKGSLINTLLEVRPHVFL 261
+ IS+LPL+H IY + L F + LK L++ L +RP +F
Sbjct: 264 VH-ISYLPLAH-------IYERVNQIVMLHYGVAVGFYQGDNLK--LMDDLAALRPTIFC 313
Query: 262 AVPRVWEKIHEKLMAVGKQTTGVKRWIANYA 292
+VPR++ +I++ + K++ G+K + N A
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAA 344
|
Length = 651 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 1e-20
Identities = 73/255 (28%), Positives = 124/255 (48%), Gaps = 31/255 (12%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
L + +G++ I G N+PEW S G + +Y T A + S+
Sbjct: 92 LGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSE 151
Query: 98 ANICVVEDDKQLEKILKVKAQCPK----LKAIVQYEG-------KPDKPGVI--SWDELM 144
+I VE+ +KI ++ CP +K +V + G + + G++ +WDE +
Sbjct: 152 VSIVFVEE----KKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFL 207
Query: 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 204
+LG + L ++ CT++YTSGT G K VM+S+++I A +I+ K
Sbjct: 208 KLGEGKQYD-----LPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262
Query: 205 SAALSV----ISFLPLSHIAAQTVDIYSVMTVAAT-LWFADKNALKGSLINTLLEVRPHV 259
+AAL+V +S+LPL+HI + ++ + AA W D LI L E++P +
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL----LIEDLGELKPTI 318
Query: 260 FLAVPRVWEKIHEKL 274
F AVPRV ++++ L
Sbjct: 319 FCAVPRVLDRVYSGL 333
|
Length = 666 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 9e-19
Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 31/271 (11%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+ A G E V I G N P+W + +Y T P A + + ++
Sbjct: 89 IGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAE 148
Query: 98 ANICVVEDDKQLEKILKVKAQCPK-LKAIVQY----EGKPDKPGVI-----SWDELMELG 147
+ V+D K+++++L+ + K LKAIV + E + DK I SW + + +G
Sbjct: 149 IDFVFVQD-KKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMG 207
Query: 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII------QYF 201
+ P E+ + CT++YTSGT G K V+L+H+ + A + + F
Sbjct: 208 KENPSETN-----PPKPLDICTIMYTSGTSGDPKGVVLTHEAV---ATFVRGVDLFMEQF 259
Query: 202 KLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWF-ADKNALKGSLINTLLEVRPHV 259
+ + V +SFLPL+HI + ++ Y A+ ++ D NAL+ + L+E++P +
Sbjct: 260 EDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALR----DDLMELKPTL 315
Query: 260 FLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290
VPRV+E+IHE + ++ +R I N
Sbjct: 316 LAGVPRVFERIHEGIQKALQELNPRRRLIFN 346
|
Length = 660 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 26/275 (9%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+ A G+ I G N PEW + G +Y T A + ++
Sbjct: 90 IGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAE 149
Query: 98 ANICVVEDDKQLEKILKVKAQCPK-LKAIVQY-------EGKPDKPGV--ISWDELMELG 147
+I V++ K + IL +C LK IV + + + ++ GV SW+E +G
Sbjct: 150 VSIAFVQESK-ISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMG 208
Query: 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 207
SLD L + CT++YTSGT G K V+L++ I K+
Sbjct: 209 ------SLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRV 262
Query: 208 L----SVISFLPLSHIAAQTVDIYSVMTVAAT-LWFADKNALKGSLINTLLEVRPHVFLA 262
S S+LPL+H+ Q ++ Y + A+ W D L+ + ++P +F
Sbjct: 263 ATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIR----YLMEDVQALKPTIFCG 318
Query: 263 VPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSL 297
VPRV+++I+ +M +++ + ++A + L
Sbjct: 319 VPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKL 353
|
Length = 660 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 6e-17
Identities = 60/278 (21%), Positives = 114/278 (41%), Gaps = 26/278 (9%)
Query: 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76
+ F+ Y++L LA A LG+++ V + +N+ E+ + G
Sbjct: 24 AVYFDGRRTTYAELDE-RVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIG-- 80
Query: 77 AAGMYTTN---SPEACLHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGKP 132
A ++ N PE + L ++ + +V+ + +L + Q P ++ ++ P
Sbjct: 81 -AVLHPINIRLKPEEIAYILNDAEDRVVLVDSE--FVPLLAAILPQLPTVRTVIVEGDGP 137
Query: 133 DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITF 192
P E EL AA D I N+ ++YTSGT G K V+LSH N+
Sbjct: 138 AAPLAPEVGEYEELLAAASDTFDF---PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFL 194
Query: 193 NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGS----- 247
++ + + KL S + +P+ H+ A + ++M A K +
Sbjct: 195 HSLAVCAWLKL-SRDDVYLVIVPMFHVHAWGLPYLALMAGA-------KQVIPRRFDPEN 246
Query: 248 LINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVK 285
L++ + R F AVP +W+ + + A + ++
Sbjct: 247 LLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLR 284
|
Length = 521 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 10/190 (5%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
LAK KLGL++ V +I N+ E+ LG + AGG + + +P+ H L S
Sbjct: 23 LAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISK 82
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
+ + D +L+K+ + + + I+ + PD I LG
Sbjct: 83 PKL-IFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRLGAEDEFRPTPL 141
Query: 158 VL--ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS--VISF 213
+ + A L+Y+SGT G K VMLSH NI N + + K + + V++F
Sbjct: 142 IDGKDDTAA-----LLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTF 196
Query: 214 LPLSHIAAQT 223
LP H T
Sbjct: 197 LPFYHAYGLT 206
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 2e-14
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 196
IS+++ + G A ++ + +A L YT GT G K ML+H N+ N
Sbjct: 103 AISFEDALASG-APLPLPVELSPDDLAV-----LQYTGGTTGVPKGAMLTHRNLVANVQQ 156
Query: 197 IIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW----FADKNALKGSLINT 251
I + K L ++ LPL HI TV++ + + AT F N LK
Sbjct: 157 IAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLK-----E 211
Query: 252 LLEVRPHVFLAVP 264
+ R +F VP
Sbjct: 212 IKRYRFTIFPGVP 224
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 120 PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 179
P+L+ ++ + G PG++++DEL+ LGRA D L T+ ++ + YTSGT G
Sbjct: 155 PELRRVI-FLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213
Query: 180 SKPVMLSHDNITFNA 194
K L+H NI N
Sbjct: 214 PKGATLTHRNILNNG 228
|
Length = 559 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
A A LG+ + V I N+P W + LGA+ AG + T + + + L DA
Sbjct: 44 AAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDA 103
Query: 99 NICVVEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDELMELGRAAPDESL 155
V L + P L+ +V E P + ++ + + G + +
Sbjct: 104 KALFVLGL-FLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAG-DPAERAP 161
Query: 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205
+ + +A +++TSGT G K ML+H + NAA +Y L
Sbjct: 162 EVDPDDVAD-----ILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTE 206
|
Length = 513 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 16/197 (8%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y+ L LA LGL R V I E + GA AGG +
Sbjct: 28 YAALSE-RVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY----EGKPDKPG--VISW 140
E H L + + +V ++L+ + C L+ ++ PG SW
Sbjct: 87 EQVAHILADCNVRL-LVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPASW 145
Query: 141 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 200
+L+ LG A P + +A ++YTSG+ G K V+LSH N+ A + Y
Sbjct: 146 PKLLALGDADP--PHPVIDSDMAA-----ILYTSGSTGRPKGVVLSHRNLVAGAQSVATY 198
Query: 201 FKLESAALSVISFLPLS 217
+ +++ LPLS
Sbjct: 199 LENRPDD-RLLAVLPLS 214
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 55/225 (24%), Positives = 81/225 (36%), Gaps = 37/225 (16%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDL-----GAI--------------YA----- 73
LA+ L LG++ V I N EW + GAI YA
Sbjct: 58 LARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSG 117
Query: 74 --GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK 131
A + T+ A L L+ A + Q + + P+L+ +V
Sbjct: 118 VRWVICADAFKTSDYHAMLQELLPGLA-------EGQPGAL--ACERLPELRGVVSL-AP 167
Query: 132 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 191
PG ++W EL G E+L ++ ++ + YTSGT G K LSH NI
Sbjct: 168 APPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNIL 227
Query: 192 FNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236
N + + L + +PL H + MTV A L
Sbjct: 228 NNGYFVAESLGLTEHDRLCVP-VPLYHCFGMVLANLGCMTVGACL 271
|
Length = 558 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 1e-10
Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 11/156 (7%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
AKA LGL + V ++ N E+ LG + AGG +G T +
Sbjct: 68 FAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAG 127
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
A + +V +D K+ + L IV G+ G ++W EL+E A D S
Sbjct: 128 AKL-IVTNDTNYGKVKGLG-----LPVIVL--GEEKIEGAVNWKELLEAADRAGDTS--- 176
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 193
E I + C L ++SGT G SK VML+H N+ N
Sbjct: 177 DNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVAN 212
|
Length = 546 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227
++YTSGT G K V+L+H + F A + L + +++ LPL HI AQ +Y
Sbjct: 84 AAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDV-LLTPLPLFHINAQAYSVY 142
Query: 228 SVMTVAATLWFADK 241
+ + V ATL +
Sbjct: 143 AALLVGATLVLLPR 156
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 19/215 (8%)
Query: 35 AGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 93
+ +A+A L GL+ +V ++ N P + + LG G A + T + LHC
Sbjct: 13 SNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSGSLLHCF 72
Query: 94 VTSDANICVVEDDKQ--LEKILKVKAQCPKLKAI---VQYEGKPDKP-GVISWDELMELG 147
A + V + + +E+IL P L+A+ V Y P GVIS ++
Sbjct: 73 RCCGARVLVADPELLEAVEEIL------PALRAMGVRVFYLSHTSPPEGVISLLAKVD-- 124
Query: 148 RAAPDESLDRVLETIAT-NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
AA DE + L + + +YTSGT G K +SH + + +A
Sbjct: 125 -AASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVL--QCSGMLSLCGVTA 181
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241
V + LPL H + + I + + ATL K
Sbjct: 182 DDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPK 216
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 62/262 (23%), Positives = 110/262 (41%), Gaps = 40/262 (15%)
Query: 34 YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 93
+A GL LG + V I EW + G +Y + EA H L
Sbjct: 119 FASGLVA----LGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSL 174
Query: 94 VTSDAN--ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG----------VISWD 141
++ IC D KQL+K++ + +Q +K ++ + + V S+
Sbjct: 175 NETEVTTVIC---DSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFS 231
Query: 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 201
E+ +LG+ P + IA ++YTSG+ G K VM++H NI A ++
Sbjct: 232 EVEKLGKENPVDPDLPSPNDIAV-----IMYTSGSTGLPKGVMMTHGNIVATVAGVMTVV 286
Query: 202 -KLESAALSVISFLPLSHI---AAQTVDIYSVMTVAATLWFAD-------KNALKGSLIN 250
KL + +++LPL+HI AA++V + V A + + N +K
Sbjct: 287 PKLGKNDV-YLAYLPLAHILELAAESV----MAAVGAAIGYGSPLTLTDTSNKIKKGTKG 341
Query: 251 TLLEVRPHVFLAVPRVWEKIHE 272
++P + AVP + +++ +
Sbjct: 342 DASALKPTLMTAVPAILDRVRD 363
|
Length = 696 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 8e-10
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 166 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVD 225
+ ++YTSG+ G K VMLSH N+T A I QY +L +++ LP S +
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDR-ILAVLPFSFDYGLSQ- 60
Query: 226 IYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270
+ + V TL + A ++ L + R F VP W ++
Sbjct: 61 LLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQL 105
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 4e-09
Identities = 70/275 (25%), Positives = 109/275 (39%), Gaps = 28/275 (10%)
Query: 11 RYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGA 70
Y + F Y++L A+ A A A L+ G + SV + N P+ + GA
Sbjct: 33 DYGPRPALEFRDRPITYTELEAM-AETAAAALLRAGYGKDASVALYLGNTPDHPINFFGA 91
Query: 71 IYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQL----EKILKVKAQCPKL---- 122
+ AG + + A H L S A + + D L K L+ K +L
Sbjct: 92 LKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLE-KGLLDRLIVCE 150
Query: 123 -----KAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 177
K P P ++++ + ++ G AAP E + ++ L YT GT
Sbjct: 151 DDNWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAE-----WPAVTPDDVALLQYTGGTT 204
Query: 178 GASKPVMLSHDNITFNAACIIQYFKLESAALS-----VISFLPLSHIAAQTVDIYSVMTV 232
G K ML+H N+T +A I + S A VI LPL HI A TV + +
Sbjct: 205 GLPKGAMLTHGNLT-SAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRR 263
Query: 233 AATLWFADKNALKGSLINTLLEVRPHVFLAVPRVW 267
+ + + ++ + E R VF VP +W
Sbjct: 264 GDLISLHQRFDVA-AVFRDIEEKRATVFPGVPTMW 297
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-09
Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 25/253 (9%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTN---SPEACLHCL 93
LA A LG++ V + +N + L +A G A ++T N SPE + +
Sbjct: 38 LANALESLGVKPGDRVATLAWNT----HRHLELYFAVPGMGAVLHTLNPRLSPEQIAYII 93
Query: 94 VTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQY----EGKPDKPGVISWDELMELGR 148
++ + V+DD +L + + P +KA+V Y + P V +++EL+E
Sbjct: 94 NHAEDKVIFVDDD--FLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLE--E 149
Query: 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN--AACIIQYFKLESA 206
+P+ + E N L YTSGT G K V+ SH ++ + A+ + L +
Sbjct: 150 ESPEYEWPELDE----NTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSES 205
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRV 266
+V+ +P+ H+ A + + M V A L + SL++ + E + V VP +
Sbjct: 206 D-TVLPVVPMFHVNAWGLPYAATM-VGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTI 263
Query: 267 WEKIHEKLMAVGK 279
W + L A GK
Sbjct: 264 WLGLLNYLEANGK 276
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 45/209 (21%), Positives = 73/209 (34%), Gaps = 33/209 (15%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
LA G + V ++ N+ E+ L + AG +P
Sbjct: 45 LAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPA---------- 94
Query: 98 ANICVVEDDKQLEK-----ILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152
E KQ++ + KL ++ V+ D + A D
Sbjct: 95 ------EIAKQVKDSGAKLAITTSELAEKLASLAL-------EPVVLLDSADDGSAAIDD 141
Query: 153 ESLDRVLET----IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 208
E I ++ L Y+SGT G SK VML+H N+ N A ++
Sbjct: 142 LLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDRE 201
Query: 209 SVI-SFLPLSHIAAQTVDIYSVMTVAATL 236
V LP+ HI TV + +++ + AT+
Sbjct: 202 DVTLCVLPMFHIYGLTVILLALLRLGATV 230
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 97 DANICVVEDDKQ-LEKILKVKAQCPKL-KAIVQY----EGKPDKPGVISWDELMELGRAA 150
D ++ +E DK+ LEKI +K + KL +I+ + + K + + D
Sbjct: 252 DISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDP-------- 303
Query: 151 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-----CIIQYFKLES 205
+ ++VYTSGT G K VMLS+ N+ I + + ++
Sbjct: 304 --------------DFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKT 349
Query: 206 AALSVISFLPLSHIAAQTVDIYSVM-TVAATLWFADKNALKGSLINTLLEVRPHVFLAVP 264
+S+LP+SHI + + S M +W D N + N+ + ++ VP
Sbjct: 350 H----LSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNS----KGNILAGVP 401
Query: 265 RVWEKIHEKLMAVGKQTTGVKRWIAN 290
+V+ +I+ +M +KR++
Sbjct: 402 KVFNRIYTNIMTEINNLPPLKRFLVK 427
|
Length = 746 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 51/248 (20%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
A +LG+ER + V +I + PE+ + GAI G + T +P+ + L S
Sbjct: 43 WGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSR 102
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
A + V+ ++ E + + P L+ ++ G PG +S+ +L + AA +
Sbjct: 103 ARVLVISEEL-WEVLKPALQKDPHLRHVIVVGGAG--PGALSYAQL--IATAAEE----- 152
Query: 158 VLETIAT--NECCTLVYTSGTEGASKPVMLSH-------------------DNITFNAAC 196
LE AT ++ +Y+SG+ G K V+ H D++ F+AA
Sbjct: 153 -LEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGITEDDVVFSAAK 211
Query: 197 IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVR 256
+ + L + +Y ++V AT + ++ T+ +
Sbjct: 212 LFFAYGLGNG-------------------LYFPLSVGATTVLMPERPTPDAVFATIERYK 252
Query: 257 PHVFLAVP 264
P VF VP
Sbjct: 253 PTVFFGVP 260
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 6/162 (3%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y++L A A A G+ + V ++ N PE+ + LG G + T
Sbjct: 65 YAELNAR-ANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA-VVALLNTQQR 122
Query: 87 EACL-HCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELME 145
A L H L DA +V ++ +E + +A + G +++L
Sbjct: 123 GAVLAHSLNLVDAKHLIVGEE-LVEAFEEARAD-LARPPRLWVAGGDTLDDPEGYEDLAA 180
Query: 146 LGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
AP + + + +YTSGT G K ++SH
Sbjct: 181 AAAGAPTTNPA-SRSGVTAKDTAFYIYTSGTTGLPKAAVMSH 221
|
Length = 600 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 56/222 (25%), Positives = 78/222 (35%), Gaps = 21/222 (9%)
Query: 8 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSD 67
L+RY + Y L +AF LGL +V ++ N PE +
Sbjct: 21 ALKRYPDRPALVLGDTRLTYGQLADR-ISRYIQAFEALGLGTGDAVALLSLNRPEVLMA- 78
Query: 68 LGAIYAGGFAAGMYTTNSPEACL--HCLVTSDANI--CVVEDDKQLEKILKVKAQCPKLK 123
+GA G T P L H V DA I +V+ +E+ L + A+ P LK
Sbjct: 79 IGAAQLAGLR---RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLK 135
Query: 124 AIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
++ PD L+ L + L YT GT G K V
Sbjct: 136 HVLTLGPVPDGVD------LLAAAAKFGPAPLVAA---ALPPDIAGLAYTGGTTGKPKGV 186
Query: 184 MLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTV 224
M +H +I A IQ + E A + PLSH
Sbjct: 187 MGTHRSIATMAQ--IQLAEWEWPADPRFLMCTPLSHAGGAFF 226
|
Length = 524 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
++YTSGT G K V+L+H N+ NA +++ ++ +A+ ++ LPL H+ ++
Sbjct: 93 IIYTSGTTGRPKGVVLTHGNLAANARALVEAWRW-TASDVLLHALPLHHVHGLFNALHCP 151
Query: 230 MTVAATLWFADK-NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA 276
+ A++ F + + + + L R VF+ VP I+ +L+
Sbjct: 152 LWAGASVEFLPRFDPQERDALRLLP--RITVFMGVP----TIYTRLLE 193
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 63/258 (24%), Positives = 99/258 (38%), Gaps = 28/258 (10%)
Query: 20 FNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA-A 78
F W Y++L A +A A L LGL++ V +G N SD A+ A A
Sbjct: 32 FGDRSWTYAELDAA-VNRVAAALLDLGLKKGDRVAALGHN------SDAYALLWLACARA 84
Query: 79 GM------YTTNSPEACLHCLVTSDANICVVEDD--KQLEKILKVKAQCPKLKAIVQYEG 130
G + E + L S A +V+ E L L + G
Sbjct: 85 GAVHVPVNFMLTGEELA-YILDHSGARAFLVDPALAPTAEAALA-LLPVDTLILSLVLGG 142
Query: 131 KPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 190
+ G + + + E G A + +A ++ ++YTSGTE K ML+H +
Sbjct: 143 REAPGGWLDFADWAEAGSVAEPD------VELADDDLAQILYTSGTESLPKGAMLTHRAL 196
Query: 191 TFN-AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLI 249
+CI+ + + + + + LPL H A V + + V AT D ++
Sbjct: 197 IAEYVSCIVA-GDMSADDIPLHA-LPLYHCAQLDVFLGPYLYVGATNVILDAPDP-ELIL 253
Query: 250 NTLLEVRPHVFLAVPRVW 267
T+ R F A P VW
Sbjct: 254 RTIEAERITSFFAPPTVW 271
|
Length = 523 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 7e-08
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA 220
++YTSGT G K VML+H N+ NA + L + +++ PL H A
Sbjct: 4 ALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLA-APLYHAA 55
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 8e-08
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227
+ YTSGT G K ML+H N+ N I + L + + +PL H+ + +
Sbjct: 5 ALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL-TEGDRTLVPVPLFHVFGLVLGVL 63
Query: 228 SVMTVAATLWFADK-NALKGSLINTLLEVRPHVFLAVP 264
+ +T ATL +K + G+ + + R VP
Sbjct: 64 ASLTAGATLVLMEKFDP--GAALRLIERERITALHGVP 99
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 73/309 (23%), Positives = 114/309 (36%), Gaps = 65/309 (21%)
Query: 8 GLERYHSVCIIGFNAPEWF-YSDL-GAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFY 65
G ER V FN + Y++L I G + +LGL + +V I EW
Sbjct: 106 GKERTMEVTH--FNETRYITYAELWERIVNFG--RGLAELGLTKGSNVAIYEETRWEWLA 161
Query: 66 SDLGAIYAGGFAAGMYTTNSPEACLHCL--VTSDANICVVEDDKQLEKILKVKA--QCP- 120
S G AA +Y +A + L A +C ++ L +++K
Sbjct: 162 SIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTI 221
Query: 121 ----KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATN--ECCTLVYTS 174
L A V EG +++W +++ G +A I N + ++YTS
Sbjct: 222 IYLDSLPASVDTEGCR----LVAWTDVVAKGHSA----GSHHPLNIPENNDDLALIMYTS 273
Query: 175 GTEGASKPVMLSHDNITFNAACIIQYF-----KLESAALSVISFLPLSHIAAQTVDIYSV 229
GT G K VM +H ++T + E + S+LPL+HI V ++
Sbjct: 274 GTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDE-TYCSYLPLAHIMEFGVT--NI 330
Query: 230 MTVAATLWFADKNALKGSLI-----NTLL-----------EVRPHVFLAVPRVWEKI--- 270
+G+LI TL E RP + VPR+++ I
Sbjct: 331 FL------------ARGALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKA 378
Query: 271 -HEKLMAVG 278
KL VG
Sbjct: 379 VEAKLPPVG 387
|
Length = 700 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 33/252 (13%)
Query: 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 94
+A+A L LGL + I+ N+ E L A+YAG A + S L+
Sbjct: 35 VRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS-------LL 87
Query: 95 TSD-------ANIC-----VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 142
+ D ++ ED + L A V I++
Sbjct: 88 SKDFAKLRHIFDLLTPGAVFAEDGAAFARAL---AALGLAGVPVVAVRGAPGGPAIAFAA 144
Query: 143 LMEL-GRAAPDESLDRVL-ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 200
L+ AA D + V +T+A ++TSG+ G K V+ +H + N A I Q
Sbjct: 145 LLATPPTAAVDAAFAAVGPDTVAK-----YLFTSGSTGLPKAVINTHRMLCANQAMIAQC 199
Query: 201 FKLESAALSVI-SFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINT---LLEVR 256
+ + V+ +LP +H + V+ TL+ D + G T L EV
Sbjct: 200 WPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLREVS 259
Query: 257 PHVFLAVPRVWE 268
P V+ VP+ +E
Sbjct: 260 PTVYFNVPKGFE 271
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 17/239 (7%)
Query: 37 GLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM---YTTNSPE-ACL-H 91
LA+A L LGL+ V I+ N+ E L A+ AG AA + Y+ S + A L H
Sbjct: 92 ALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKH 151
Query: 92 CLVTSDANICVVEDDKQLEKILK-VKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAA 150
+ + + L + + V G + I++ +L
Sbjct: 152 LFDLVKPRVVFAQSGAPFARALAALDLLDVTV---VHVTGPGEGIASIAFADLAA---TP 205
Query: 151 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAALS 209
P ++ + I + ++TSG+ G K V+ + + N A Q +
Sbjct: 206 PTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPP 265
Query: 210 V-ISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSL---INTLLEVRPHVFLAVP 264
V + ++P +H + ++ TL+ D L G I L E+ P V+ VP
Sbjct: 266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVP 324
|
Length = 624 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227
++YTSGT G K V+LSH N+ NA + Q L + ++S LPL H+ +
Sbjct: 3 AFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDV-LLSVLPLFHVVGGGSGLL 61
Query: 228 SVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVW 267
+ T+ + S + + + R V VP ++
Sbjct: 62 GALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLY 101
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 172 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
YTSG+ GA K VM++H N+ N I + F L+ +S+LPL H
Sbjct: 155 YTSGSTGAPKGVMVTHGNLLANLRAIARAFGLD-PDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 45/203 (22%), Positives = 70/203 (34%), Gaps = 20/203 (9%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
A LG+ V + N PE ++ G A G A + PE L + A
Sbjct: 72 ANLLHSLGVGPGDVVAFLLPNLPETHFALWGG-EAAGIANPINPLLEPEQIAELLRAAGA 130
Query: 99 NICVV---EDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAA---- 150
+ V + +K+ +V A P+L+ +V+ + PG + +A
Sbjct: 131 KVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARIL 190
Query: 151 ---------PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 201
P + L I ++ +T GT G K +H N NA
Sbjct: 191 DFDAELARQPGDRLFSG-RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL 249
Query: 202 KLESAALSVISFLPLSHIAAQTV 224
L +V LPL H+ A V
Sbjct: 250 GLGPGD-TVFCGLPLFHVNALLV 271
|
Length = 632 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 36/183 (19%)
Query: 74 GGFAAGMYTTN-----SPEACLHCLVTSDANICVVEDD--KQLEKIL---KVKA------ 117
G AG+ N +P H L+ S A++ VV D+ +++++ VK
Sbjct: 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGL 154
Query: 118 ----QCPK---LKAIVQYEGK--PDK--PGVISWDELMELGRAAPDESLDRVLETIATNE 166
PK + +V+Y K P+ G I + E + LGR +L I ++
Sbjct: 155 GDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQ-----IEPDD 209
Query: 167 CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQ 222
L YT GT G +K ML+H N+ N Q+ KLE VI+ LPL HI A
Sbjct: 210 IAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFAL 269
Query: 223 TVD 225
T +
Sbjct: 270 TAN 272
|
Length = 560 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
LA A + G+ V I+ N E+ S L A G A + +P +
Sbjct: 55 LAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCG 114
Query: 98 ANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD 156
A++ V E L + V+ P L +V G D V+ +++L+ A +
Sbjct: 115 AHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSDD-SVLGYEDLL----AEAGPAHA 167
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFL-- 214
V I + ++YTSGT G K +L+H N+T A ++ + S + F+
Sbjct: 168 PV--DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADIN--SDVGFVGV 223
Query: 215 PLSHIAA 221
PL HIA
Sbjct: 224 PLFHIAG 230
|
Length = 542 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L + A +LG+E+ V I PE +++ LGA+ G ++
Sbjct: 76 YKEL-KELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFME 134
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY-EGKPDKPGVISWDELME 145
EA L S+A + ++ LE+ K P LK ++ E + PG + ++ LME
Sbjct: 135 EAVRDRLEDSEAKV-LITTPALLER--KPADDLPSLKHVLLVGEDVEEGPGTLDFNALME 191
Query: 146 LGRAAPDESLDRVLETIATN--ECCTLVYTSGTEGASKPVMLSHD 188
A DE + T+ + L YTSG+ G K V+ H+
Sbjct: 192 ---QASDE-----FDIEWTDREDGAILHYTSGSTGKPKGVLHVHN 228
|
Length = 570 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
PG + W+ L + A + D ++ ++YTSGT G K L+H N+ NA
Sbjct: 191 PGTVPWETL--VDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANA 248
Query: 195 ACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLL 253
A + L V++ LP+ H T+ + +++ L + LI +
Sbjct: 249 AQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID--LILDAM 306
Query: 254 EVRPHVFL-AVPRVWEKIHEKLMAVGKQTTGVK 285
+ P +L VP ++EKI E G +GV+
Sbjct: 307 KKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVR 339
|
Length = 573 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 39/175 (22%), Positives = 60/175 (34%), Gaps = 7/175 (4%)
Query: 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81
+ Y + LA A KLG+ + V ++ N P + G AG +
Sbjct: 27 DRRYTYRETYDR-CRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLN 85
Query: 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG--VIS 139
T + L S+A + V D + L + A K I+ E P
Sbjct: 86 TRLDADDIAFILNHSEAKVLFV-DQEFLSLAEEALALLST-KEIIDTEIIVISPAAEDSE 143
Query: 140 WDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
+ +L + L + +L YTSGT G K V+ +H NA
Sbjct: 144 EGDYEDLLAGGDPDPLPIPP--DDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNA 196
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
P + + + + GR + + L+ IA L YT GT G +K ML+H N+ N
Sbjct: 182 PQAVPFKQALRQGRGLSLKPVPVGLDDIAV-----LQYTGGTTGLAKGAMLTHGNLVANM 236
Query: 195 ----ACIIQYFK-----LESAALSVISFLPLSHIAAQTVDIYSVM 230
AC+ Q ++ +I+ LPL HI A T + +M
Sbjct: 237 LQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMM 281
|
Length = 562 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 143 LMELGRAAPD--ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 200
L+E AAPD E++ R + +A ++YTSGT G SK MLSH N+ NA ++ Y
Sbjct: 137 LLEAAAAAPDDFETVPRGADDLAA-----ILYTSGTTGRSKGAMLSHGNLLSNALTLVDY 191
|
Length = 504 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 83 TNSPEACLHCLVTSDANI-CVVEDDKQLEKILKVK---AQCPKLKAIVQYEGKPDKPGVI 138
T S A + A I V+ K LEK LK K + P+ ++ E K
Sbjct: 698 TASEAALKSAI--EQAQIKTVITSRKFLEK-LKNKGFDLELPENVKVIYLEDLKAKIS-- 752
Query: 139 SWDELMELGRA--APDESLDR-VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 195
D+L L A P L R T ++ T++++SG+EG K VMLSH NI N
Sbjct: 753 KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIE 812
Query: 196 CIIQYFKLESAALSVISFLPLSH 218
I F L + ++S LP H
Sbjct: 813 QISDVFNLRNDD-VILSSLPFFH 834
|
Length = 1146 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 46/190 (24%)
Query: 29 DLGAIY--------AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80
+ GA Y A LA L G+E + F P W + IY G
Sbjct: 45 NHGASYTYSALDHAASRLANWLLAKGIE---PGDRVAFQLPGW--CEFTIIYLACLKVGA 99
Query: 81 YTTNSPEACLHC-------LVTSDANIC--VVEDDKQLEKILKVKAQCPKLKAIVQYEGK 131
+ + + + + + ++ IL ++ Q P+L+ IV
Sbjct: 100 VSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGV--- 156
Query: 132 PDKPGVISWDELMELGRAAPDESLDRVLE---------TIATNECCTLVYTSGTEGASKP 182
DK L A SL +++ T +E +++TSGTEG K
Sbjct: 157 -DK-----------LAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKG 204
Query: 183 VMLSHDNITF 192
VML+H+NI
Sbjct: 205 VMLTHNNILA 214
|
Length = 547 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 132 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 191
GV++W E + G A P + ++ L YTSGT G K M +H +
Sbjct: 164 LAPGGVVAWKEALAAGLAPPPHTAGP-------DDLAVLPYTSGTTGVPKGCMHTHRTVM 216
Query: 192 FNAACIIQYFKL--ESAALSVISFLPLSHI 219
NA + + ES L+V LPL H+
Sbjct: 217 ANAVGSVLWSNSTPESVVLAV---LPLFHV 243
|
Length = 546 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 131 KPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 190
K P IS+ + GR + V + + L YT GT G +K ML+H N+
Sbjct: 177 KYHLPDAISFRSALHKGR-----RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNM 231
Query: 191 TFN--AACIIQYFKLESAALSVISFLPLSHIAAQTVD 225
N A L V++ LPL HI A TV+
Sbjct: 232 LANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVN 268
|
Length = 560 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 125 IVQYEGKPDKPGVISWDELME-LGRAAPDESLDRV-LETIATNECCTLVYTSGTEGASKP 182
+V G + L+ AA D + V +TIA ++TSG+ G K
Sbjct: 172 VVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAK-----FLFTSGSTGLPKA 226
Query: 183 VMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241
V+ +H + N + Q F L ++ +LP +H ++ V+ TL+ D
Sbjct: 227 VINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDG 286
Query: 242 NALKGSLINT---LLEVRPHVFLAVPRVWE 268
G T L E+ P V+ VP+ WE
Sbjct: 287 KPTPGGFDETLRNLREISPTVYFNVPKGWE 316
|
Length = 614 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA 220
++ L+YTSGT G K VM +H+ + ++ L + ++ PL+HI
Sbjct: 93 DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPS-PLAHIT 147
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 228
+++TSGT G K V L+H N+ +A I + KL + + ++ +PL HI V + +
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL-TPSDRCLNVMPLFHIHGLIVSLLA 64
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 17/204 (8%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
A F LG+ + V + N PE+ + G G + E L S A
Sbjct: 51 ANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQA 110
Query: 99 NICVVEDD--KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD 156
++ V +I + A + + P GV S+ +L +
Sbjct: 111 SLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVSSFTQL--KAQQPATLCYA 167
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS----VIS 212
L T T E +++TSGT K V+++H N+ F Y+ AL ++
Sbjct: 168 PPLSTDDTAE---ILFTSGTTSRPKGVVITHYNLRFAG-----YYSAWQCALRDDDVYLT 219
Query: 213 FLPLSHIAAQTVDIYSVMTVAATL 236
+P HI Q + + AT
Sbjct: 220 VMPAFHIDCQCTAAMAAFSAGATF 243
|
Length = 517 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 18/168 (10%)
Query: 25 WFYSDLGAI---YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81
W + +LG++ A L+ A GL+R V +I PEW+ ++ I G
Sbjct: 42 WSFRELGSLSRKAANVLSGA---CGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGT 98
Query: 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL--KAIVQYEGKPDKPGVIS 139
+ + L+ L S A C+V D+ + + ++CP L K +V +
Sbjct: 99 IQLTAKDILYRLQASKAK-CIVTSDELAPAVDSIASECPSLKTKLLVSEHSRD------G 151
Query: 140 WDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
W EL + A E ++T + E + +TSGT G K SH
Sbjct: 152 WLNFKELLKEASTEH--TCVKT-KSQEPMAIYFTSGTTGFPKMAEHSH 196
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
++YTSG+ G K VM+ H + A + + + L +A V+ F S A+ +I+
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGL-TAGDRVLQFASFSFDASVW-EIFPP 155
Query: 230 MTVAATLWFADKNALK--GSLINTLLEVRPHVFLAVPRVWE 268
+ ATL A L+ +L L E R V VP +
Sbjct: 156 LLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLR 196
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 60/227 (26%), Positives = 92/227 (40%), Gaps = 52/227 (22%)
Query: 15 VCII-GFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73
C+I G + Y+D+ + + +A KLG+ + V ++ N PE+ + LGA
Sbjct: 40 PCLIDGATGRVYTYADVELL-SRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRR 98
Query: 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEK-----ILKVKAQCPKLKAIVQY 128
G TT +P T A I KQ + I+ KLK + +
Sbjct: 99 GAVT----TTANP------FYTP-AEIA-----KQAKASGAKLIITQSCYVDKLKGLAED 142
Query: 129 EGKP----DKP--GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 182
+G D P G + + EL + A + L V I+ ++ L Y+SGT G K
Sbjct: 143 DGVTVVTIDDPPEGCLHFSELTQ----ADENELPEV--EISPDDVVALPYSSGTTGLPKG 196
Query: 183 VMLSHDN-ITFNAACIIQ---------YFKLESAALSVISFLPLSHI 219
VML+H +T + Q YF + L V LP+ HI
Sbjct: 197 VMLTHKGLVT----SVAQQVDGENPNLYFHSDDVILCV---LPMFHI 236
|
Length = 537 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
P + +++ + G P + + +A L YT GT G +K ML+H N+ N
Sbjct: 182 PQAVKFNDALAKGAGQPVTEANPQADDVAV-----LQYTGGTTGVAKGAMLTHRNLVANM 236
Query: 195 ACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVM 230
L +I+ LPL HI A T ++M
Sbjct: 237 LQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMM 274
|
Length = 562 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 23/165 (13%)
Query: 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---SPEACLH 91
A LA + GL V I N E+ + LGA A A N + +
Sbjct: 38 ANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR---AVPVNVNYRYVEDELRY 94
Query: 92 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDELMELGR 148
L SDA + +V + + ++ +V + PKL+ +V E G PG + +++ + G
Sbjct: 95 LLDDSDA-VALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGS 153
Query: 149 AAPD---ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 190
D S D + L+YT GT G K VM ++I
Sbjct: 154 PERDFGERSPDDLY----------LLYTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 169 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
+++TSG+EG K V+LSH N+ N I L + ++ LPL H
Sbjct: 149 VILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTED-VLLGALPLFH 197
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 173 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH----IAAQTVDIYS 228
TSG+ G+ K V ++H N+ NA + + + ++S+LPL H + TV
Sbjct: 160 TSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVP--- 216
Query: 229 VMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270
M A L++V P FL P +W ++
Sbjct: 217 -MYFGA----------------ELVKVTPMDFLRDPLLWAEL 241
|
Length = 545 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
+ YTSGT G K M +H + AA + L ++ + +FLPL H+A + +
Sbjct: 89 IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLL-AFLPLFHVAGMQGSMNAP 147
Query: 230 MTVAATL 236
+ ATL
Sbjct: 148 IYTGATL 154
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
++YTSG+ G K V+++H ++ A + + + L+ V+ F LS A+ +I+
Sbjct: 125 VIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDD-RVLQFASLSFDASVE-EIFGA 182
Query: 230 MTVAATLWFADKNALKGSLINTLLEVRPH---VFLAVPRVWE 268
+ ATL ++ + + H V P +
Sbjct: 183 LLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLA 224
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 25/241 (10%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTNS---PEACLHCL 93
LA+A LG+E V + +N Y L A Y G A +T N PE + +
Sbjct: 52 LAQALAALGVEPGDRVGTLAWNG----YRHLEAYYGVSGSGAVCHTINPRLFPEQIAY-I 106
Query: 94 VTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG----VISWDELMELGRA 149
V + V+ D L + + QCP +K V P ++ ++ L+
Sbjct: 107 VNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVG---- 162
Query: 150 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA--ACIIQYFKLESAA 207
+ D N+ +L YTSGT G K + SH + +A A + L SA
Sbjct: 163 --AQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGL-SAR 219
Query: 208 LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLA-VPRV 266
+V+ +P+ H+ A + YS A L L G + L+E F A VP V
Sbjct: 220 DAVLPVVPMFHVNAWGLP-YSAPLTGAKLVLPGP-DLDGKSLYELIEAERVTFSAGVPTV 277
Query: 267 W 267
W
Sbjct: 278 W 278
|
Length = 539 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 36/132 (27%)
Query: 156 DRVLETIATNECCTLV----------YTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205
+R+ + + LV +TSG+ G K V +SH N+ +++ F L
Sbjct: 78 ERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTE 137
Query: 206 AA-----------LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKG--SLINTL 252
LSV D++ + ATL+ K + +L L
Sbjct: 138 GDVFSNQAPFSFDLSVF-------------DLFPALASGATLYVIPKEQIADPLALFEFL 184
Query: 253 LEVRPHVFLAVP 264
E V+++VP
Sbjct: 185 KEHGLTVWVSVP 196
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 197
S D + GR S ++ IAT L++TSGT G K V + N +A
Sbjct: 89 DSLDRIEAAGRYETSLSASFNMDQIAT-----LMFTSGTTGKPKAVPHTFRNHYASAVGS 143
Query: 198 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA 243
+ ++S LPL HI+ ++ ++ + ATL DK
Sbjct: 144 KENLGFTEDDNWLLS-LPLYHISGLSI-LFRWLIEGATLRIVDKFN 187
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 10/164 (6%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
E Y DL LA A LG + V I N+PE + L G A +
Sbjct: 40 ELTYGDL-RREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPG 98
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
S EA + ++ DD K A A++ + G+ + +
Sbjct: 99 LSAEAVADRIADLGPK-VLIADDGTFRNG-KEIALLEDADAVLSSVVVVPRLGLWYDEAV 156
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
+ E L ++ L+YTSGT G K ++ SH
Sbjct: 157 EKASEKFEFEPLPA-------DDPLFLLYTSGTTGKPKGIVHSH 193
|
Length = 528 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
PG + +++ + G + V + ++ L YT GT G SK L H NI N
Sbjct: 179 PGHVRFNDALAEGARQ---TFKPV--KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANV 233
Query: 195 ACIIQYFKLESA--------ALSVISFLPLSHIAAQTVDIYSVMTVAA 234
+ + L+ A L+ + LPL HI A TV ++ +
Sbjct: 234 LQMEAW--LQPAFEKKPRPDQLNFVCALPLYHIFALTVC--GLLGMRT 277
|
Length = 557 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 39/202 (19%), Positives = 59/202 (29%), Gaps = 41/202 (20%)
Query: 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 84
W + +L Y+ +A F G V + N E+ LG G A + +
Sbjct: 4 WTFRELNE-YSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNL 62
Query: 85 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELM 144
E+ LHC+ S A + L +P
Sbjct: 63 RLESLLHCITVSKAKALIFNLLDPLLT------------------QSSTEPPSQ------ 98
Query: 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 204
D + L +YTSGT G K ++ H AA F +
Sbjct: 99 ------DDVNFRDKL---------FYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMR 143
Query: 205 SAALSVISFLPLSHIAAQTVDI 226
+ LPL H A + +
Sbjct: 144 PEDVVYDC-LPLYHSAGGIMGV 164
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHI 219
T+++TSG+ G K V+ + N +A + L ++S LPL H+
Sbjct: 80 ATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLS-LPLFHV 130
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 37/186 (19%)
Query: 102 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKP-DKPG--------VISWDELMELGRAA-- 150
+V D + E++ ++ +CP ++A+V D V S++ L++ GR+
Sbjct: 115 IVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVY 173
Query: 151 --PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA-A 207
P+ + ET A C Y++GT GA K V+ SH + +Q L + +
Sbjct: 174 DWPE-----LDETTAAAIC----YSTGTTGAPKGVVYSH------RSLYLQSLSLRTTDS 218
Query: 208 LSV---ISFL---PLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFL 261
L+V SFL P+ H+ + V + + M+ L F + +L + P V
Sbjct: 219 LAVTHGESFLCCVPIYHVLSWGVPLAAFMS-GTPLVFPGPDLSAPTLAKIIATAMPRVAH 277
Query: 262 AVPRVW 267
VP +W
Sbjct: 278 GVPTLW 283
|
Length = 576 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 37/113 (32%)
Query: 88 ACLHCLVTS---DANICVVEDDK-QLEKILKVKAQCPKLKAIVQY-EGKPDKPGVISWDE 142
A L L+ + I +ED + Q+ K+K +V + PD P VI
Sbjct: 743 ARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVYFCNRDPDDPAVI---- 798
Query: 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 195
++TSG+EG K V+LSH N+ N A
Sbjct: 799 ----------------------------LFTSGSEGTPKGVVLSHRNLLANRA 823
|
Length = 1140 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 41/243 (16%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
L A +LG++R V ++ + ++ + LGAI AG + T + + + L S
Sbjct: 43 LGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSR 102
Query: 98 ANICVVEDDKQLEKILK-VKAQCPKLKAIVQYEGKPDKPGVISWDELM----ELGRAAPD 152
A + V +L ++K + P L+ V G + EL+ E + A
Sbjct: 103 ARVVFVS--GELLPVIKAALGKSPHLEHRVVVGRPE--AGEVQLAELLATESEQFKPAAT 158
Query: 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVIS 212
++ ++ +Y+SG+ G K V+ +H N + A E A + +
Sbjct: 159 QA----------DDPAFWLYSSGSTGMPKGVVHTHSNPYWTA---------ELYARNTLG 199
Query: 213 F----LPLSHIAAQTVDIYSV-------MTVAATLWFADKNALKGSLINTLLEVRPHVFL 261
+ S AA+ Y + M+V AT + ++ + L +P +F
Sbjct: 200 IREDDVVFS--AAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFY 257
Query: 262 AVP 264
VP
Sbjct: 258 GVP 260
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
Y++ A +A A A LG+++ V ++ N PE+ + L G AA + TT
Sbjct: 3 RLSYAEFNA-WANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTT 61
Query: 84 NSPEACLHCLVTSDANICVVE 104
E HC+ SDA +V+
Sbjct: 62 QRGEVLAHCINVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 26/206 (12%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
LA K L + + + G P + LG+I +G H + D
Sbjct: 38 LAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG----------------HAYIPVD 81
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
+I +++E I++ A + + +I+ L + + S D
Sbjct: 82 TSIPS----ERIEMIIEA-AGPELVIHTAELSIDAVGTQIITLSALEQAETSGGPVSFD- 135
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
+ ++ ++YTSG+ G K V +SHDN+ ++ F L ++ P S
Sbjct: 136 --HAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSE-GKQFLNQAPFS 192
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNA 243
+D+Y + TL DK+
Sbjct: 193 -FDLSVMDLYPCLASGGTLHCLDKDI 217
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.003
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 44 KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG---MYTTNSPEACLH--------C 92
KLG+E+ V I+ N P+ G + AGG +YT E LH C
Sbjct: 68 KLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILC 127
Query: 93 LVTSDANICVVEDDKQLEKIL--KVKAQCPKLKAIVQYEGKPDKPGVI---SWDELMELG 147
L + V+ ++E ++ ++ P K ++ + + ++ S E + L
Sbjct: 128 LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLW 187
Query: 148 RAAPDESLDRVLETIA--TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY-FKLE 204
+ E ++ +E N+ L YT GT G K VML+H N+ N +Q+ + +
Sbjct: 188 NSVEKE-VNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCK 246
Query: 205 SAALSVISFLPLSHIAAQT 223
V+ LP H+ T
Sbjct: 247 EGEEVVLGVLPFFHVYGMT 265
|
Length = 563 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 141 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 200
D A PD D + L++TSGT G K V +H + + Q
Sbjct: 141 DAEPPFRVADPD---DLFM----------LIFTSGTSGDPKAVRCTHRKVASAGVMLAQR 187
Query: 201 FKLESAALSVISFLPLSHIAA 221
F L + +S +PL H A
Sbjct: 188 FGLGPDDVCYVS-MPLFHSNA 207
|
Length = 529 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| KOG1177|consensus | 596 | 100.0 | ||
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| KOG1176|consensus | 537 | 100.0 | ||
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| KOG1256|consensus | 691 | 100.0 | ||
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179|consensus | 649 | 100.0 | ||
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1180|consensus | 678 | 100.0 | ||
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.98 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.97 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.97 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.97 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.96 | |
| KOG1175|consensus | 626 | 99.96 | ||
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.92 | |
| KOG3628|consensus | 1363 | 99.82 | ||
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.72 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.64 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.5 | |
| KOG1178|consensus | 1032 | 99.48 | ||
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.39 | |
| KOG3628|consensus | 1363 | 98.85 | ||
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 98.63 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 97.54 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 96.9 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 95.04 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 93.53 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 92.58 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 89.94 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 89.36 | |
| PRK09274 | 552 | peptide synthase; Provisional | 86.86 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 86.15 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 86.09 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 85.81 | |
| PLN02565 | 322 | cysteine synthase | 85.41 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 84.74 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 84.64 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 84.27 | |
| KOG1176|consensus | 537 | 84.17 | ||
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 84.02 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 84.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 84.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 83.48 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 83.02 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 82.97 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 82.75 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 82.44 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 82.36 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 81.8 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 81.61 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 81.49 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 80.99 | |
| PLN02654 | 666 | acetate-CoA ligase | 80.88 | |
| PLN03013 | 429 | cysteine synthase | 80.75 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 80.56 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 80.48 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 80.44 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 80.37 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 80.37 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 80.09 |
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=309.34 Aligned_cols=288 Identities=17% Similarity=0.215 Sum_probs=255.6
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|+..+++.||+.+..+ ++.++||+|+.++ ++.+|++|.++|+++||+|+++.||+.+|+.+++||+++|.+.+++
T Consensus 54 q~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~e-v~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~ 132 (596)
T KOG1177|consen 54 QLLETTTERVPDKEAAVFDHEGIRLTFSEFVSE-VESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNL 132 (596)
T ss_pred HHHHHHhhccCcceEEEEeeccchhhHHHHHHH-HHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEecc
Confidence 568888999999555444 6778999999997 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHH----HHHHHh-------------ccCCCccEEEEccCCCCCCCcccHHHH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLE----KILKVK-------------AQCPKLKAIVQYEGKPDKPGVISWDEL 143 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~----~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~l 143 (305)
||.+..++++..|++.+.+++|+...+..+ .+.++. +.++.+.+++..+++...++...+.++
T Consensus 133 NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~~~sev 212 (596)
T KOG1177|consen 133 NPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAFLLSEV 212 (596)
T ss_pred CcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCceehHHH
Confidence 999999999999999999999998754322 222222 235788889988867667889999999
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
+..........+........+|+++.|-|||||||.|||+.+||-+++++......+.++ ..++++++..|++|.+|.+
T Consensus 213 ~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~-~e~~~i~~~~Pl~H~~G~~ 291 (596)
T KOG1177|consen 213 LKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGY-NEKHRICIPNPLYHCFGCV 291 (596)
T ss_pred HHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCc-CcceEEEecCchHHHHHHH
Confidence 988776555555555556788999999999999999999999999999999999999999 8888999999999999999
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHH
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYA 292 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a 292 (305)
.++++++..|+++|++.+..+|.+.+++|+++|||.++.+|++|..|++.+....++++++|..+.+++
T Consensus 292 ~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa 360 (596)
T KOG1177|consen 292 LGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGA 360 (596)
T ss_pred HHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCC
Confidence 999999999999999888777999999999999999999999999999999999999999998887654
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=302.74 Aligned_cols=290 Identities=19% Similarity=0.247 Sum_probs=228.5
Q ss_pred hHHHHHHHhcccceeeecc--C---CccchHHHHHHHHHHHHHHHHHc---CCCCC-----------CeEEEEecCChhH
Q psy2835 3 AFLKLGLERYHSVCIIGFN--A---PEWFYSDLGAIYAGGLAKAFLKL---GLERY-----------HSVCIIGFNAPEW 63 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~---~~~Ty~el~~~~~~~la~~L~~~---g~~~g-----------d~V~i~~~n~~~~ 63 (305)
++|.+.++++|++.++... + +.+||+|+.++ +.++|++|.+. |+++| |+|+|+++|+++|
T Consensus 65 ~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~-v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew 143 (746)
T PTZ00342 65 KLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKK-VLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINW 143 (746)
T ss_pred HHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHH-HHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHH
Confidence 5788888999997777652 2 58999999996 99999999974 99998 9999999999999
Q ss_pred HHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC---------
Q psy2835 64 FYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK--------- 134 (305)
Q Consensus 64 ~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------- 134 (305)
+++++||+++|++++|+++.++.+++.++++++++++++++.+ ..+.+.+....++.++.+++++.....
T Consensus 144 ~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~-~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 222 (746)
T PTZ00342 144 LVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLD-LVEGLLERKNELPHLKKLIILDTLIKSKEININKEE 222 (746)
T ss_pred HHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHH-HHHHHHHhhccCCCceEEEEECCCCccccccccccc
Confidence 9999999999999999999999999999999999999999766 467777777778888888887652110
Q ss_pred ---------CCc-------------------------------ccHHHHHHhccCC--CCchhHH---------hhhccC
Q psy2835 135 ---------PGV-------------------------------ISWDELMELGRAA--PDESLDR---------VLETIA 163 (305)
Q Consensus 135 ---------~~~-------------------------------~~~~~l~~~~~~~--~~~~~~~---------~~~~~~ 163 (305)
.+. .++.++....... ....+.. ......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (746)
T PTZ00342 223 KNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNED 302 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCCCCCC
Confidence 000 1122222211100 0000000 011346
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh--ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
++++++|+|||||||.||||++||+|+..++....... .. ...|++++.+|++|++++.. .+.++..|+++++.+.
T Consensus 303 ~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~-~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~~~~ 380 (746)
T PTZ00342 303 PDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK-YNPKTHLSYLPISHIYERVI-AYLSFMLGGTINIWSK 380 (746)
T ss_pred ccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccC-CCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC
Confidence 79999999999999999999999999999887654332 12 35689999999999999876 6778999999999875
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhhH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQ 298 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~~ 298 (305)
+ +..+++.|++++||+++++|.++++|.+.......+.+.++..++.+|.+.+..
T Consensus 381 -~-~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 435 (746)
T PTZ00342 381 -D-INYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKS 435 (746)
T ss_pred -C-HHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3 689999999999999999999999999877666666778888888888876654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=301.87 Aligned_cols=281 Identities=22% Similarity=0.373 Sum_probs=231.5
Q ss_pred hHHHHHHHhcccceeeec----cC-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGF----NA-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~----~~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
++++..++++|+..++.. ++ +.+||+|+.++ ++++|++|.++|+++||+|+++++|+++|+++++||+++
T Consensus 48 ~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~-v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 126 (651)
T PLN02736 48 DNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTA-RTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAY 126 (651)
T ss_pred HHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 578889999999777631 21 35999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---------CCCcccHHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---------KPGVISWDELM 144 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~l~ 144 (305)
|++++|+++.++.+++.+++++++++++|++.+ ..+.+.++...++.++.++.+++... .....+++++.
T Consensus 127 G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (651)
T PLN02736 127 SYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQ-TLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLL 205 (651)
T ss_pred CCeEEEeecCCCHHHHHHHHhccCCCEEEECHH-HHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHH
Confidence 999999999999999999999999999999876 35666666666777777776643211 01234677766
Q ss_pred HhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH
Q psy2835 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV 224 (305)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~ 224 (305)
......+... ....++++++|+|||||||.||||++||+++..++......+++ .++|++++.+|++|++|+..
T Consensus 206 ~~~~~~~~~~-----~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~-~~~d~~l~~lPl~h~~~~~~ 279 (651)
T PLN02736 206 AQGRSSPQPF-----RPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKF-YPSDVHISYLPLAHIYERVN 279 (651)
T ss_pred HhcccCCCCC-----CCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCC-CCCCEEEEeCCHHHHHHHHH
Confidence 5432111110 13467999999999999999999999999999999888888888 89999999999999999865
Q ss_pred HHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Q psy2835 225 DIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKS 294 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~ 294 (305)
++.++..|+++++.+.. +..+++.+++++||+++++|.+++.+.+.........+.++..++.++..
T Consensus 280 -~~~~l~~G~~i~~~~~~--~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (651)
T PLN02736 280 -QIVMLHYGVAVGFYQGD--NLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYN 346 (651)
T ss_pred -HHHHHHcCCEEEEeCCC--HHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 78899999999988753 58899999999999999999999999887666555566777777666544
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=300.13 Aligned_cols=281 Identities=22% Similarity=0.267 Sum_probs=228.6
Q ss_pred hHHHHHHHhcccceeeeccCCc--cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPE--WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~--~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++++.+.++|+..++.+.++. +||+||.++ ++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~-~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpl 93 (534)
T COG0318 15 SLLERAARRNPDRPALIFLGRGGRLTYRELDRR-ANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPL 93 (534)
T ss_pred HHHHHHHHhCCCceEEEEcCCCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeec
Confidence 6788999999998888887776 999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
||.++..++.+++++.++++++++.+ ..+....+....+....+........... .+++++........... .
T Consensus 94 n~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~ 166 (534)
T COG0318 94 NPRLTPRELAYILNDAGAKVLITSAE-FAALLEAVAEALPVVLVVLLVGDADDRLP-ITLEALAAEGPGPDADA-----R 166 (534)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEccc-chhHHHHHhccCCcceEEEeccccccccc-ccHHHHhhccCCccccc-----C
Confidence 99999999999999999999999987 33455555444433333332222110000 24555533221111110 0
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc--cCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK--LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
...++++++++|||||||.||||++||+++..+.......++ + +++|++++++|++|.+|+...++.++..|+++++
T Consensus 167 ~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~-~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~ 245 (534)
T COG0318 167 PVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGL-TPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVL 245 (534)
T ss_pred CCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccC-CCCceEEEecChHHHHHHHHHHHHHHHcCCEEEe
Confidence 146899999999999999999999999999999988888888 8 9999999999999999999877888999999999
Q ss_pred eCC-ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccCh-HHHHHHHHH
Q psy2835 239 ADK-NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTG-VKRWIANYA 292 (305)
Q Consensus 239 ~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~s-l~~~~~~~a 292 (305)
.+. ..++..++..+.++++|+++++|+++..+++++.....+.++ ||.++.+++
T Consensus 246 ~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~ 301 (534)
T COG0318 246 LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGA 301 (534)
T ss_pred CCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCC
Confidence 984 333789999999999999999999999999988777666665 776666533
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=291.32 Aligned_cols=289 Identities=26% Similarity=0.421 Sum_probs=222.7
Q ss_pred HHHHHHHhcccceeeec----cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEe
Q psy2835 4 FLKLGLERYHSVCIIGF----NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG 79 (305)
Q Consensus 4 ~l~~~~~~~~~~~~~~~----~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~ 79 (305)
.+.+.++.+|+..++.+ ..+.+||+|+.++ +.++|.+|.+.|+.+||+|+|++.|+++|+++.+||+.+|++.||
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~-v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp 99 (613)
T COG1022 21 RLAERVKDRPDGVALMYKELGGWEAITYRELYER-VRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVP 99 (613)
T ss_pred HHHHHhhcCCcceeEeeecCCcceEeeHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEe
Confidence 44555666676555543 3468999999997 999999999999977999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccC---CCCCCCcccHHHHHHhccC---CCCc
Q psy2835 80 MYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG---KPDKPGVISWDELMELGRA---APDE 153 (305)
Q Consensus 80 i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~l~~~~~~---~~~~ 153 (305)
+.+..++++++++|++++++++|++.....+.+......++.........+ .........++........ ....
T Consensus 100 ~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (613)
T COG1022 100 IYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSA 179 (613)
T ss_pred cCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhhhhccc
Confidence 999999999999999999999999997666777666665443221111111 0000001111110000000 0000
Q ss_pred hhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-cCCCCceEEEeCchhHHHHHHHHHHHHHHh
Q psy2835 154 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTV 232 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~ 232 (305)
.......+..++|+|.|+|||||||.||||++||+|+.+++........ . +++|+.++.+|+.|++..++.....+..
T Consensus 180 ~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~-~~~d~~LsfLPlaHi~Er~~~~~~~~~~ 258 (613)
T COG1022 180 GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPI-GPGDRVLSFLPLAHIFERAFEGGLALYG 258 (613)
T ss_pred ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCC-CCCcEEEEeCcHHHHHHHHHHHHHHhhc
Confidence 0001112467899999999999999999999999999999999999986 7 8999999999999999998765555555
Q ss_pred CcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhh
Q psy2835 233 AATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSL 297 (305)
Q Consensus 233 G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~ 297 (305)
|+++..... +.++++.+++.|||++.++|.+|+++.+....+..+.+-.+..+|.||.+.+.
T Consensus 259 g~~~~~~~~---~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~ 320 (613)
T COG1022 259 GVTVLFKED---PRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAY 320 (613)
T ss_pred ceEEEecCC---HHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 555554433 47999999999999999999999999999888888888899999999998874
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=298.72 Aligned_cols=283 Identities=23% Similarity=0.378 Sum_probs=224.8
Q ss_pred hHHHHHHHhcccceeeec----c---C--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGF----N---A--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~----~---~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++.. . + +++||+|+.++ ++++|++|.++|+++||+|+|+++|+++|+++++||+++
T Consensus 47 ~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~-v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 125 (660)
T PLN02861 47 QFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDA-AIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQ 125 (660)
T ss_pred HHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 568888999999777642 1 1 36999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC-CccEEEEccCCCCC---------CCcccHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDK---------PGVISWDEL 143 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~---------~~~~~~~~l 143 (305)
|++++|+++.++.+++.+++++++++++|++.+. .+.+......++ .++.++.+++.... ....+++++
T Consensus 126 G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (660)
T PLN02861 126 GITYVPLYDTLGANAVEFIINHAEVSIAFVQESK-ISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEF 204 (660)
T ss_pred CCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHH-HHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHH
Confidence 9999999999999999999999999999998763 455554444432 46666666542110 112456666
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-----cCCCCceEEEeCchhH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-----LESAALSVISFLPLSH 218 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~ 218 (305)
......... ..+..++++++|+|||||||.||||++||+++..++......++ + ..+|++++.+|++|
T Consensus 205 ~~~~~~~~~------~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~lPl~H 277 (660)
T PLN02861 205 SLMGSLDCE------LPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVA-TEEDSYFSYLPLAH 277 (660)
T ss_pred HHhCcccCC------CCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccC-CCCCEEEEECcHHH
Confidence 543321111 01346799999999999999999999999999988776555433 4 67899999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhh
Q psy2835 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSL 297 (305)
Q Consensus 219 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~ 297 (305)
+++... .+.++..|+++++.+. + +..+++.|++++||+++++|++++.|.+.........+.++..++.|+.+.+.
T Consensus 278 ~~~~~~-~~~~l~~G~~v~~~~~-~-~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~ 353 (660)
T PLN02861 278 VYDQVI-ETYCISKGASIGFWQG-D-IRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKL 353 (660)
T ss_pred HHHHHH-HHHHHHhCCEEEEeCC-C-HHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999876 4568999999998753 3 68999999999999999999999999886655555667778888887766443
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=297.27 Aligned_cols=281 Identities=26% Similarity=0.408 Sum_probs=217.8
Q ss_pred hHHHHHHHhcccceeeec----cC-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGF----NA-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~----~~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++.+ .+ +.+||+|+.++ ++++|++|.++|+++||+|+|+++|+++|+++++||+++
T Consensus 49 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~ 127 (666)
T PLN02614 49 DVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDI-VIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAH 127 (666)
T ss_pred HHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 678888999999877752 11 24899999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhc-cCCCccEEEEccCCCCC---------CCcccHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKA-QCPKLKAIVQYEGKPDK---------PGVISWDEL 143 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~---------~~~~~~~~l 143 (305)
|++++|+++.++.+++.+++++++++++|++.+. ...+..... ..+.++.++.+++.... ....+++++
T Consensus 128 Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (666)
T PLN02614 128 GLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKK-ISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEF 206 (666)
T ss_pred CCEEEEecCCCCHHHHHHHHhccCCCEEEECHHH-HHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHH
Confidence 9999999999999999999999999999998763 333322211 12235666666432100 113456666
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-----ccCCCCceEEEeCchhH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-----KLESAALSVISFLPLSH 218 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~l~~~pl~~ 218 (305)
.......... .....++|+++|+|||||||.||||++||+++...+......+ ++ ..+|++++.+|++|
T Consensus 207 ~~~~~~~~~~-----~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~-~~~d~~l~~lPl~H 280 (666)
T PLN02614 207 LKLGEGKQYD-----LPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAAL-TVKDVYLSYLPLAH 280 (666)
T ss_pred HhhcccCCCC-----CCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCC-CCCcEEEEeccHHH
Confidence 5433211100 0123578999999999999999999999999998877655443 46 78999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Q psy2835 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKS 294 (305)
Q Consensus 219 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~ 294 (305)
+++... .+..+..|+++++.+. ++..+++.+++++||+++++|++++++.+.......+.+.++..++.++.+
T Consensus 281 ~~~~~~-~~~~l~~G~~v~~~~~--~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 353 (666)
T PLN02614 281 IFDRVI-EECFIQHGAAIGFWRG--DVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFS 353 (666)
T ss_pred HHHHHH-HHHHHHhCCEEEEeCC--CHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999865 5677889999998863 368999999999999999999999999876655444445556666665544
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=298.69 Aligned_cols=288 Identities=14% Similarity=0.130 Sum_probs=234.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.++++.+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 53 ~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~-~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~ 131 (549)
T PRK07788 53 GLVAHAARRAPDRAALIDERGTLTYAELDEQ-SNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNT 131 (549)
T ss_pred HHHHHHHHHCCCceEEEECCCceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 5788999999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC--CCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--DKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
.++.+++.++++++++++++++.+. ...+.++....+....++...... ...++..++++.......+.
T Consensus 132 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 202 (549)
T PRK07788 132 GFSGPQLAEVAAREGVKALVYDDEF-TDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPL-------- 202 (549)
T ss_pred CCCHHHHHHHHHhcCCcEEEECchh-HHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCCC--------
Confidence 9999999999999999999999773 344544444444444433222211 11345667777654322111
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
+...+++++++|||||||.||+|.+||+++...+......+++ ..+|++++..|++|.+|+.. ++.++..|+++++.+
T Consensus 203 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~ 280 (549)
T PRK07788 203 PKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPF-RAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRR 280 (549)
T ss_pred CCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCC-CcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECC
Confidence 2245788999999999999999999999999988887788888 89999999999999999865 788999999999987
Q ss_pred CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
.++ +..+++.+++++||++.++|+++..+++.... ...++++||.++++ +.+.+|.++++.|
T Consensus 281 ~~~-~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~Y 355 (549)
T PRK07788 281 RFD-PEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLY 355 (549)
T ss_pred CCC-HHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceecc
Confidence 655 79999999999999999999999999886554 45567888866544 2334566777665
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=284.82 Aligned_cols=268 Identities=19% Similarity=0.168 Sum_probs=212.5
Q ss_pred HHHHHHh-cccceeeeccC-----CccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 5 LKLGLER-YHSVCIIGFNA-----PEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 5 l~~~~~~-~~~~~~~~~~~-----~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
+++.... .++..++.+.+ +++||+||.++ ++++|+.|++ .|+ +||||++++||.++.+++++||+++|++.
T Consensus 15 ~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~-v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 15 LDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRRE-VARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHH-HHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 4444443 34555555542 57999999996 9999999987 568 99999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHH-----H-HhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKIL-----K-VKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~-----~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
+|+.+.++++++...+++.+++++|+.+.. ..... + +.+.... ++++.... ..|+++........
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~-~~~gk~~~~~~~~~~~~~~---~iv~~r~~-----~~~~~~~~~~~~~~ 163 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGT-FRNGKEIALLEDADAVLSS---VVVVPRLG-----LWYDEAVEKASEKF 163 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEeccc-ccccccccchhHHHHhhcc---eEEecccc-----ccHHHHhhccCCCC
Confidence 999999999999999999999999998753 11111 1 1111111 33232211 56777776543222
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH-hhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.. .+...+|+++|+|||||||+||||+|+|..+......... .+.+ .++|++++..++.|++|..+.++.+|
T Consensus 164 ~~------~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~-~~~Dv~w~~ad~GW~~g~~~~v~~pL 236 (528)
T COG0365 164 EF------EPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDL-LPGDRFWNSSDPGWIYGLWYSVFSPL 236 (528)
T ss_pred Cc------cccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCC-CCCCEEEeCCCchhhhCchHHHHHHH
Confidence 21 1357899999999999999999999999988877665444 5677 89999999999999999999999999
Q ss_pred HhCcEEEEeCCccc--hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 231 TVAATLWFADKNAL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.+|+++++...... |+.+++.+++|++|+++..|+.+++|.+......++++|||.+...
T Consensus 237 ~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~Sa 298 (528)
T COG0365 237 ASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSA 298 (528)
T ss_pred hcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeecc
Confidence 99999999865433 7899999999999999999999999998766667899999966543
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=287.60 Aligned_cols=256 Identities=21% Similarity=0.300 Sum_probs=209.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcC--CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLG--LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g--~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
++.+||+|+.++ +.++|..|.++| +++||+|+++++|++++..+++||+..|+++.++||.+.+.++.++++.++++
T Consensus 43 g~~~T~~e~~~~-~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~k 121 (537)
T KOG1176|consen 43 GRELTYSELHDR-CRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPK 121 (537)
T ss_pred CcEEcHHHHHHH-HHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCe
Confidence 489999999996 999999999876 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCC------ccc-HHHHHHhccCCCCchhHHhhhccCCCceeEEEe
Q psy2835 100 ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG------VIS-WDELMELGRAAPDESLDRVLETIATNECCTLVY 172 (305)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 172 (305)
++|++... .+.+.+....+. ..++++........ ... +..+...... . . ..+...+|++.|+|
T Consensus 122 iif~d~~~-~~~i~~~~~~~~--~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~---~~~~~~dd~~~il~ 191 (537)
T KOG1176|consen 122 LIFVDEDF-YDKISEATSKLA--LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP--D--G---IRPVSEDDTAAILY 191 (537)
T ss_pred EEEEcCch-HHHHHHHHhhcC--CceEEEecccCccccccccccccchhhccccCCC--c--c---cccCCCCCeEEEec
Confidence 99999884 577776665554 33444443311100 011 2222211110 0 0 23456799999999
Q ss_pred ccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHh
Q psy2835 173 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTL 252 (305)
Q Consensus 173 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i 252 (305)
||||||.||||++||++++.+.........+ ..+|+.++.+|++|++|+...+.+.+..|++++..+.++ ++.+++.+
T Consensus 192 SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~-~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~-~~~~~~~i 269 (537)
T KOG1176|consen 192 SSGTTGLPKGVVLSHRNLIANTLSIKIGWEL-TSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFD-AELFLDLI 269 (537)
T ss_pred CCCCCCCCceEEEecHHHHHHHHHhhhcccC-CCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCC-HHHHHHHH
Confidence 9999999999999999999998887777777 789999999999999999885555666666666666665 79999999
Q ss_pred hhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 253 LEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 253 ~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++|++|++.++|.++..|++++....++++|+|.+.++
T Consensus 270 ~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~g 307 (537)
T KOG1176|consen 270 EKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSG 307 (537)
T ss_pred HHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEec
Confidence 99999999999999999999987888999999988654
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=295.03 Aligned_cols=293 Identities=19% Similarity=0.217 Sum_probs=232.2
Q ss_pred hHHHHHHHhcccceeeec--------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC
Q psy2835 3 AFLKLGLERYHSVCIIGF--------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G 74 (305)
++|++.++++|++.++.+ .++++||+||.++ +.++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 29 ~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~-v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G 107 (632)
T PRK07529 29 ELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLAD-VTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG 107 (632)
T ss_pred HHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 578888999999777754 3468999999996 9999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCC----------------C
Q psy2835 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPD----------------K 134 (305)
Q Consensus 75 ~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~----------------~ 134 (305)
+++|+++.++.+++.+++++++++++++++.+ ..+.+.+.....+..+.++.++.... .
T Consensus 108 -i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (632)
T PRK07529 108 -IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAH 186 (632)
T ss_pred -EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccc
Confidence 57999999999999999999999999997542 23455555566677777776654321 1
Q ss_pred CCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeC
Q psy2835 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFL 214 (305)
Q Consensus 135 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 214 (305)
.+...+.+.+......... ......++++++++|||||||.||+|.+||+++..+.......+++ .++|++++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~ 261 (632)
T PRK07529 187 ARILDFDAELARQPGDRLF----SGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL-GPGDTVFCGL 261 (632)
T ss_pred cccCCHHHHHhcCCCcccc----ccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCC-CCCCEEEEec
Confidence 2234555554432211100 0012367999999999999999999999999999988877777888 8999999999
Q ss_pred chhHHHHHHHHHHHHHHhCcEEEEeCCcc--c---hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 215 PLSHIAAQTVDIYSVMTVAATLWFADKNA--L---KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 215 pl~~~~g~~~~~~~~l~~G~~~v~~~~~~--~---~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
|++|++|....++.++..|+++++.+... . ...+++.++++++|++.++|+++..|++.+. ...++++||.+++
T Consensus 262 pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~ 340 (632)
T PRK07529 262 PLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALC 340 (632)
T ss_pred CchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEE
Confidence 99999999888999999999999986421 1 2578899999999999999999999987643 2346788886554
Q ss_pred H-----------HHHHhhhHHHhhh
Q psy2835 290 N-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 290 ~-----------~a~~~g~~~~~~~ 303 (305)
+ +....|+++++.|
T Consensus 341 gg~~l~~~l~~~~~~~~g~~l~~~Y 365 (632)
T PRK07529 341 GAAPLPVEVFRRFEAATGVRIVEGY 365 (632)
T ss_pred cCCCCCHHHHHHHHHHhCCcEeeee
Confidence 3 3344677777766
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=288.60 Aligned_cols=286 Identities=24% Similarity=0.372 Sum_probs=226.7
Q ss_pred hHHHHHHHhcccceeeecc----C-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGFN----A-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~----~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++... + +.+||+|+.++ ++++|..|.+.|+++||+|+|+++|+++|+++++||+++
T Consensus 46 ~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~ 124 (660)
T PLN02430 46 DIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEE-VLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAH 124 (660)
T ss_pred HHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 5788888999997776431 1 24799999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC---------CCcccHHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK---------PGVISWDELM 144 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~l~ 144 (305)
|++++|+++.++.+++.+++++++++++|+++......+.......+.++.++.+++.... ....+|+++.
T Consensus 125 G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (660)
T PLN02430 125 SLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFL 204 (660)
T ss_pred CCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHH
Confidence 9999999999999999999999999999998764333333333344566777776542210 1134577766
Q ss_pred HhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-----ccCCCCceEEEeCchhHH
Q psy2835 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-----KLESAALSVISFLPLSHI 219 (305)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~l~~~pl~~~ 219 (305)
..+...+... ....++++++|+|||||||.||||++||+++..++....... ++ +.+|++++.+|++|+
T Consensus 205 ~~~~~~~~~~-----~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~-~~~d~~ls~lPl~H~ 278 (660)
T PLN02430 205 HMGKENPSET-----NPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKM-THDDVYLSFLPLAHI 278 (660)
T ss_pred HhhccCCCCC-----CCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCC-CCCCEEEEeCcHHHH
Confidence 5443221111 123578999999999999999999999999998876654321 45 788999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhhH
Q psy2835 220 AAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQ 298 (305)
Q Consensus 220 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~~ 298 (305)
++... .+.++..|+++++.... +..+++.+++++||++.++|.+++++.+.......+.+.++..++.++.+.+..
T Consensus 279 ~~~~~-~~~~l~~G~~i~~~~~~--~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 354 (660)
T PLN02430 279 LDRMI-EEYFFRKGASVGYYHGD--LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA 354 (660)
T ss_pred HHHHH-HHHHHHcCCEEEEeCCC--hhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99876 45678899999887653 478999999999999999999999999877666666777888888887776543
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=278.28 Aligned_cols=287 Identities=30% Similarity=0.424 Sum_probs=241.5
Q ss_pred hHHHHHHHhcccceeeec--------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC
Q psy2835 3 AFLKLGLERYHSVCIIGF--------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G 74 (305)
+++.+....+++..++.. ..+.+||+|..++ +++++..|++.|+++++.|+|++.|++||+++.+||...|
T Consensus 79 ~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~-~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~ 157 (691)
T KOG1256|consen 79 EGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYER-AENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYS 157 (691)
T ss_pred HHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHH-HHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcC
Confidence 567777888888555433 1247999999996 9999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhc--cCCCccEEEEccCCCCC-----C----CcccHHHH
Q psy2835 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKA--QCPKLKAIVQYEGKPDK-----P----GVISWDEL 143 (305)
Q Consensus 75 ~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~-----~----~~~~~~~l 143 (305)
.+.|||...++++++++++++....++|+|++...+.+.+... +.+.++.++.+++..+. . .+.+|+++
T Consensus 158 ~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~ 237 (691)
T KOG1256|consen 158 LVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEF 237 (691)
T ss_pred CEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHH
Confidence 9999999999999999999999999999998877788877766 47889999999987643 2 27789999
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh--ccC---CCCceEEEeCchhH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF--KLE---SAALSVISFLPLSH 218 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~---~~~~~~l~~~pl~~ 218 (305)
.+.+.+....+ + .++.++|.|.|.|||||||.||||++||+|++..+....... ... ...|.+++.+||.|
T Consensus 238 ~~lG~~~~~~~---~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAH 313 (691)
T KOG1256|consen 238 EELGKKNQRKP---R-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAH 313 (691)
T ss_pred HhhcccccCCC---C-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHH
Confidence 98876333222 1 256889999999999999999999999999999655322111 110 34799999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhh
Q psy2835 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSL 297 (305)
Q Consensus 219 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~ 297 (305)
++..+.. ...+..|+++.|.+... ..+.+.+++.+||++.++|.+++++.+.......+.+.+|+.+++||.....
T Consensus 314 i~er~~~-~~~~~~G~~IgF~~gD~--~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~ 389 (691)
T KOG1256|consen 314 IFERVVE-LYTFYIGAKIGFARGDI--LKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKL 389 (691)
T ss_pred HHHHHHH-HhHhhcccEEEEecCCh--HHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999885 44458999999999664 7888889999999999999999999999888888777899999999988665
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=291.98 Aligned_cols=295 Identities=16% Similarity=0.139 Sum_probs=225.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.++++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 11 ~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~-~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~ 89 (563)
T PLN02860 11 QCLTRLATLRGNAVVTISGNRRRTGHEFVDG-VLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNY 89 (563)
T ss_pred HHHHHHHHhcCCceEEecCCceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCc
Confidence 5788889999998888788889999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHH-hccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC-chhHHhhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKV-KAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD-ESLDRVLE 160 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 160 (305)
.++.+++.+++++.++++++++++. ......+ ...++..+..+..++.... ....+.++......... ........
T Consensus 90 ~~~~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (563)
T PLN02860 90 RWSFEEAKSAMLLVRPVMLVTDETC-SSWYEELQNDRLPSLMWQVFLESPSSS-VFIFLNSFLTTEMLKQRALGTTELDY 167 (563)
T ss_pred ccCHHHHHHHHHhcCceEEEEeccc-chHHHHHhhccCCceeEEEEecCcccc-cccchhhccccchhccCccccccccC
Confidence 9999999999999999999998753 1222222 1233444444444332110 00111111110000000 00000001
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
...++++++|+|||||||.||+|++||+++..+.......+++ .++|++++..|++|.+|+.. ++.++..|+++++.+
T Consensus 168 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~v~~~ 245 (563)
T PLN02860 168 AWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGY-GEDDVYLHTAPLCHIGGLSS-ALAMLMVGACHVLLP 245 (563)
T ss_pred CCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCC-CCCCEEEEecCchhhccHHH-HHHHHHcCceEEecC
Confidence 2357899999999999999999999999999887777677788 89999999999999999854 889999999999988
Q ss_pred CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh--hcccChHHHHHHH-----------HHHHh-hhHHHhhh
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV--GKQTTGVKRWIAN-----------YAKST-SLQHYMAY 303 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~~~sl~~~~~~-----------~a~~~-g~~~~~~~ 303 (305)
.++ +..+++.++++++|++.++|+++..|++..... ..++++||.++++ +.+.+ |+++++.|
T Consensus 246 ~~~-~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~Y 321 (563)
T PLN02860 246 KFD-AKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAY 321 (563)
T ss_pred CCC-HHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCC
Confidence 765 789999999999999999999999998865432 3456788766544 22233 67777766
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=290.27 Aligned_cols=283 Identities=20% Similarity=0.349 Sum_probs=225.6
Q ss_pred hHHHHHHHhcccceeeec------------cC-----------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGF------------NA-----------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFN 59 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------------~~-----------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n 59 (305)
+++++.++++||..++.+ ++ +.+||+|+.++ ++++|++|.++|+++||+|+|+++|
T Consensus 62 ~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~lG~~~gd~Vai~~~n 140 (696)
T PLN02387 62 ALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFER-VCNFASGLVALGHNKEERVAIFADT 140 (696)
T ss_pred HHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 688999999999777731 12 13899999996 9999999999999999999999999
Q ss_pred ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC-----
Q psy2835 60 APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----- 134 (305)
Q Consensus 60 ~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 134 (305)
+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+ ..+.+.++..+++.++.++.+++....
T Consensus 141 ~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~-~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~ 219 (696)
T PLN02387 141 RAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSK-QLKKLIDISSQLETVKRVIYMDDEGVDSDSSL 219 (696)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHH-HHHHHHHHhhccCCceEEEEECCCCchhhhhh
Confidence 99999999999999999999999999999999999999999999876 457777777777888888887653211
Q ss_pred -----CCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-ccCCCCc
Q psy2835 135 -----PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAAL 208 (305)
Q Consensus 135 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~~ 208 (305)
....+++++...+...+... ....++|+++|+|||||||.||||++||+++..++......+ ++ .++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~-~~~d 293 (696)
T PLN02387 220 SGSSNWTVSSFSEVEKLGKENPVDP-----DLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKL-GKND 293 (696)
T ss_pred hccCCcEEEEHHHHHHhhccCCCCC-----CCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCC-CCCC
Confidence 11245666665433211111 123679999999999999999999999999999887765553 56 8899
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccc-------hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhccc
Q psy2835 209 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL-------KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQT 281 (305)
Q Consensus 209 ~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~-------~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 281 (305)
++++.+|++|++++.. ....+..|+++.+...... +..++..+++++||++.++|.+++++.+.........
T Consensus 294 ~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~ 372 (696)
T PLN02387 294 VYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAK 372 (696)
T ss_pred EEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcc
Confidence 9999999999999876 4556778888776543211 1345678999999999999999999998766555556
Q ss_pred ChHHHHHHHHHHH
Q psy2835 282 TGVKRWIANYAKS 294 (305)
Q Consensus 282 ~sl~~~~~~~a~~ 294 (305)
+.+...++.++..
T Consensus 373 ~~~~~~l~~~a~~ 385 (696)
T PLN02387 373 GGLAKKLFDIAYK 385 (696)
T ss_pred cHHHHHHHHHHHH
Confidence 6677777776654
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=287.04 Aligned_cols=294 Identities=15% Similarity=0.159 Sum_probs=235.1
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+++++.++.+|+..++.+.+ +.+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++|++++|++
T Consensus 28 ~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~ 106 (547)
T PRK13295 28 DDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAAL-VDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAV 106 (547)
T ss_pred HHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcE
Confidence 57888889999987776654 78999999996 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC-
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP- 151 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~- 151 (305)
++|++|..+.+++.++++.++++++++++.. ..+.+.++....+..+.++.++.. +..++.++........
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 182 (547)
T PRK13295 107 LNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD----GADSFEALLITPAWEQE 182 (547)
T ss_pred EeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC----CccCHHHHhhCCccccc
Confidence 9999999999999999999999999998752 123334444455566666655432 2234555543211000
Q ss_pred -CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 -DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
............++++++++|||||||.||+|++||+++..++......+++ .++|++++..|++|.+|++..++.++
T Consensus 183 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~~~~~~~l 261 (547)
T PRK13295 183 PDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL-GADDVILMASPMAHQTGFMYGLMMPV 261 (547)
T ss_pred cccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCC-CCCCeEEEecCchhhhhHHHHHHHHH
Confidence 0000001112456899999999999999999999999999988888888888 89999999999999999988899999
Q ss_pred HhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHH
Q psy2835 231 TVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQH 299 (305)
Q Consensus 231 ~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~ 299 (305)
..|+++++.+..+ +..+++.++++++|++.++|+++..+.+.......++++||.++.+ +.+.+|+++
T Consensus 262 ~~G~~~~~~~~~~-~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~ 340 (547)
T PRK13295 262 MLGATAVLQDIWD-PARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKI 340 (547)
T ss_pred HcCCeEEeCCCCC-HHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHhCCCe
Confidence 9999999988765 6999999999999999999999999988766666778888766543 233456777
Q ss_pred Hhhh
Q psy2835 300 YMAY 303 (305)
Q Consensus 300 ~~~~ 303 (305)
++.|
T Consensus 341 ~~~Y 344 (547)
T PRK13295 341 VSAW 344 (547)
T ss_pred EEec
Confidence 6665
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=288.89 Aligned_cols=281 Identities=19% Similarity=0.250 Sum_probs=213.8
Q ss_pred hHHHHHHHhcccceeeecc-----CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIGFN-----APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~-----~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++|++.++++|+..++.+. .+++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 43 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~-v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~ 121 (614)
T PRK08180 43 DRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALER-VRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPY 121 (614)
T ss_pred HHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeE
Confidence 5678888999997777553 258999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCC-----HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC
Q psy2835 78 AGMYTTNS-----PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152 (305)
Q Consensus 78 v~i~~~~~-----~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (305)
+|+++.++ .+++.+++++++++++++++............ .....++..+.........+++++........
T Consensus 122 vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 198 (614)
T PRK08180 122 APVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV--PADVEVVAVRGAVPGRAATPFAALLATPPTAA- 198 (614)
T ss_pred eeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc--cCCceEEEecCCCCCcccccHHHHhccccccc-
Confidence 99999998 79999999999999999986522222111111 11122333332211112345666654321100
Q ss_pred chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCC--CCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES--AALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 153 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.........++++++|+|||||||.||||++||+++..++......+++ . .++++++.+|++|.+|+...++.++
T Consensus 199 --~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~~~~l~~lPl~h~~g~~~~~~~~l 275 (614)
T PRK08180 199 --VDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPF-LAEEPPVLVDWLPWNHTFGGNHNLGIVL 275 (614)
T ss_pred --hhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccc-cCCCCcEEEEecchHHHhhHHHHHHHHH
Confidence 0011113457899999999999999999999999999988877666665 3 5689999999999999887788999
Q ss_pred HhCcEEEEeCCccch---hHHHHHhhhcCCcEEEechHHHHHHHHHHHH----hhcccChHHHHHHH
Q psy2835 231 TVAATLWFADKNALK---GSLINTLLEVRPHVFLAVPRVWEKIHEKLMA----VGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~~~~~---~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~~~sl~~~~~~ 290 (305)
..|+++++.+....+ ..+++.++++++|+++++|.++..|++.... ...++++||.++++
T Consensus 276 ~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~g 342 (614)
T PRK08180 276 YNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYA 342 (614)
T ss_pred hcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEc
Confidence 999999997643222 4678889999999999999999999875432 23456788766654
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=285.69 Aligned_cols=279 Identities=13% Similarity=0.124 Sum_probs=214.5
Q ss_pred hHHHHHHHhcccceeeeccC-CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~-~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+.+.+.++++|+..++.+.+ +++||+||.++ ++++|+.|.+. +||+|+++++|+++++++++||+++|++++|++
T Consensus 23 ~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~-~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 98 (539)
T PRK06334 23 ESFLKLCSEMTTATVCWDEQLGKLSYNQVRKA-VIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKIPVMIN 98 (539)
T ss_pred HHHHHHHHhCCCceEEEeCCCCcccHHHHHHH-HHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcCCeeEecC
Confidence 45677888899977775544 78999999996 99999999873 899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC-CccEEEEccCCCCCCCcccHHHHHHhcc--CCCCchhH--
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDKPGVISWDELMELGR--AAPDESLD-- 156 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~-- 156 (305)
+..+.+++.++++++++++++++.+. ...+.+...... ....++.+++.. ....+.+...... ..+.....
T Consensus 99 ~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (539)
T PRK06334 99 WSQGLREVTACANLVGVTHVLTSKQL-MQHLAQTHGEDAEYPFSLIYMEEVR---KELSFWEKCRIGIYMSIPFEWLMRW 174 (539)
T ss_pred cccchHHHHHHHHHcCCCEEEehHHH-HHHHhhhhhccccccccEEEEehhh---hhccHHHhhhhhhhhcCCchhhhhc
Confidence 99999999999999999999998763 344433322111 111233332211 0111111111000 00000000
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
.......++++++|+|||||||.||||.+||+++..+.......+++ +.+|++++.+|++|.+|+...++.++..|+++
T Consensus 175 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~v 253 (539)
T PRK06334 175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSP-KEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPV 253 (539)
T ss_pred ccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCC-CCCceEEEecchHhhhhhHHHHHHHHHcCCeE
Confidence 00113467899999999999999999999999999988777777888 89999999999999999887788999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++.....++..+++.|+++++|++.++|++++.|++.......++++||.++++
T Consensus 254 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~g 307 (539)
T PRK06334 254 VFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIG 307 (539)
T ss_pred EEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEEC
Confidence 988654457999999999999999999999999998776666778888876654
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=292.94 Aligned_cols=283 Identities=14% Similarity=0.134 Sum_probs=214.0
Q ss_pred hhHHHHHHHhcccceeeeccC--------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 2 KAFLKLGLERYHSVCIIGFNA--------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~--------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+.+|++..++.|+..++.+.+ +++||+||.++ ++++|+.|++.|+++||+|+++++|+++++++++||+++
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~ 256 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQ-VSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILA 256 (728)
T ss_pred HHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 345666555677766666543 37999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHH-----HHHHHHHhccCCCccEEEEccCCCC------CCCcccHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ-----LEKILKVKAQCPKLKAIVQYEGKPD------KPGVISWDE 142 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~ 142 (305)
|++++|+++.++.+++.+++++++++++|+++... .+....+..... ..++++..... ......|++
T Consensus 257 Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~~~~~~~~~~ 334 (728)
T PLN03052 257 GCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRVKLREGDMSWDD 334 (728)
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCccccccccCCccHHH
Confidence 99999999999999999999999999999976421 111111111111 12222221110 012345777
Q ss_pred HHHhccCCC-CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHH
Q psy2835 143 LMELGRAAP-DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 221 (305)
Q Consensus 143 l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 221 (305)
+........ ..... ......+++++|+|||||||+||||+++|.+++.........+++ .++|++++..|++|++|
T Consensus 335 ~~~~~~~~~~~~~~~--~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l-~~~d~~~~~~~l~w~~g 411 (728)
T PLN03052 335 FLARANGLRRPDEYK--AVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDI-RKGDIVCWPTNLGWMMG 411 (728)
T ss_pred HHhcccccccccccc--ccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCC-CCCcEEEECCCcHHHhH
Confidence 654321110 00000 012246899999999999999999999999987776665556778 89999999999999999
Q ss_pred HHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH
Q psy2835 222 QTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY 291 (305)
Q Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~ 291 (305)
. +.++.+|..|+++++.+....+..+++.+++++||++.++|++++.|.+.......++++||.++.++
T Consensus 412 ~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~G 480 (728)
T PLN03052 412 P-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTG 480 (728)
T ss_pred H-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecC
Confidence 7 45889999999999998644457899999999999999999999999875434566788999776543
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=291.01 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=214.6
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.++++.+.+.|+..++.+ .++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 56 ~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav 134 (628)
T TIGR02316 56 NALDRHLDERGEQLALVTVSSETGQERTLTYRQLHRE-VNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI 134 (628)
T ss_pred HHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 466666677888766654 2357999999996 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccC-CCccEEEEccCCCCC-----CCcccHHH
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQC-PKLKAIVQYEGKPDK-----PGVISWDE 142 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~-~~~~~~i~~~~~~~~-----~~~~~~~~ 142 (305)
++|+++.++.+++.+++++++++++|+++.. ....+.+..... ....+++.++..... .....+++
T Consensus 135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 214 (628)
T TIGR02316 135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAA 214 (628)
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHH
Confidence 9999999999999999999999999997531 012222222222 234455555532111 11234555
Q ss_pred HHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHH-HHHHHHhhccCCCCceEEEeCchhHHHH
Q psy2835 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISFLPLSHIAA 221 (305)
Q Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~~~~g 221 (305)
+......... + .....++++++|+|||||||.||||+++|.++..+ .......+++ +++|++++..|++|+.|
T Consensus 215 ~~~~~~~~~~-~----~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g 288 (628)
T TIGR02316 215 LRTQHEDAQV-P----VEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGI-RAGQVMFSASDVGWVVG 288 (628)
T ss_pred HhhccccCCC-C----ceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCC-CCCcEEEEcCCCCeeeh
Confidence 5443211100 0 01236789999999999999999999999998654 3445556778 88999999999999998
Q ss_pred HHHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHHH
Q psy2835 222 QTVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIAN 290 (305)
Q Consensus 222 ~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~~ 290 (305)
+...++.++..|+++++.+. ..++..+++.++++++|+++++|++++.|.+... ....++++||.++++
T Consensus 289 ~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~g 362 (628)
T TIGR02316 289 HSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLA 362 (628)
T ss_pred hhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEe
Confidence 87778999999999999874 2236889999999999999999999999877532 234567888866543
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=280.91 Aligned_cols=278 Identities=19% Similarity=0.279 Sum_probs=233.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|++.++.+|+..++.+.++++||+||.++ +.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 9 ~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 87 (513)
T PRK07656 9 ELLARAARRFGDKEAYVFGDQRLTYAELNAR-VRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNT 87 (513)
T ss_pred HHHHHHHHHCCCCeEEEeCCCceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCc
Confidence 5678889999998888889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC---CCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK---PGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
..+.+++.+++++.+++++++++.. ...........+..+.++........ ....+|+++..........
T Consensus 88 ~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 160 (513)
T PRK07656 88 RYTADEAAYILARGDAKALFVLGLF-LGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERA------ 160 (513)
T ss_pred ccCHHHHHHHHhhcCceEEEEchhh-HHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCCCc------
Confidence 9999999999999999999998873 34444444555556666544433211 1224566666443221111
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
....++++++++|||||||.||+|.+||.++...+......+++ +++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 161 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 239 (513)
T PRK07656 161 PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGL-TEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL 239 (513)
T ss_pred CCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCC-CCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec
Confidence 23467899999999999999999999999999988888888888 99999999999999999888889999999999998
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+... +..+++.++++++|++.++|.++..+.+.......+++++|.++++
T Consensus 240 ~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~ 289 (513)
T PRK07656 240 PVFD-PDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTG 289 (513)
T ss_pred CcCC-HHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEec
Confidence 7665 7999999999999999999999999998766666678888877654
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=282.27 Aligned_cols=289 Identities=19% Similarity=0.243 Sum_probs=232.3
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|.+.+.++|+..++.+.++++||+||.++ +.++|..|.+. |+++||+|+++++|+++++++++||+++|++++|++
T Consensus 14 ~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~-v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 92 (546)
T PRK08314 14 HNLEVSARRYPDKTAIVFYGRAISYRELLEE-AERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVN 92 (546)
T ss_pred HHHHHHHHHcCCCcceeecCceecHHHHHHH-HHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecC
Confidence 5678888999998888888999999999996 99999999999 999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC-----------------------CCCCcc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP-----------------------DKPGVI 138 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~ 138 (305)
+..+.+++.++++.+++++++++... ...+......+ ..+.++...... ...++.
T Consensus 93 ~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (546)
T PRK08314 93 PMNREEELAHYVTDSGARVAIVGSEL-APKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVV 170 (546)
T ss_pred cCcCHHHHHHHHHhCCCeEEEEccch-hhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccccccccccccccc
Confidence 99999999999999999999998773 34444443332 233333221000 001233
Q ss_pred cHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhH
Q psy2835 139 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218 (305)
Q Consensus 139 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~ 218 (305)
.+++........ ......++++++|+|||||||.||+|.+||+++..++......+++ .++|++++.+|++|
T Consensus 171 ~~~~~~~~~~~~-------~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~ 242 (546)
T PRK08314 171 AWKEALAAGLAP-------PPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNS-TPESVVLAVLPLFH 242 (546)
T ss_pred cHHHHhcccCCC-------CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCC-CCCceEEEEcCchH
Confidence 455444321110 0123467899999999999999999999999999998888778888 99999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH-------
Q psy2835 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY------- 291 (305)
Q Consensus 219 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~------- 291 (305)
.+|+...++.++..|+++++.+... +..+++.++++++|++.++|.++..++........+++++|.++.++
T Consensus 243 ~~g~~~~~~~~l~~G~~i~~~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~ 321 (546)
T PRK08314 243 VTGMVHSMNAPIYAGATVVLMPRWD-REAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAV 321 (546)
T ss_pred HHHHHHHHHHHHHcCCeEEecCCCC-HHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHH
Confidence 9999888899999999999998765 68999999999999999999999998876544555678888766543
Q ss_pred ----HHHhhhHHHhhh
Q psy2835 292 ----AKSTSLQHYMAY 303 (305)
Q Consensus 292 ----a~~~g~~~~~~~ 303 (305)
...+|+++++.|
T Consensus 322 ~~~~~~~~~~~~~~~Y 337 (546)
T PRK08314 322 AERLKELTGLDYVEGY 337 (546)
T ss_pred HHHHHHHcCCcEEecc
Confidence 333566666655
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=289.78 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=209.4
Q ss_pred hHHHHHHH-hcccceeeecc------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 3 AFLKLGLE-RYHSVCIIGFN------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 3 ~~l~~~~~-~~~~~~~~~~~------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
.+|++.++ .+|+..++.+. ++.+||+||.++ +.++|+.|++.|+++||+|+++++|+++++++++||+++|+
T Consensus 92 ~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 92 NCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDR-VCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 46666554 47787776552 258999999996 99999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChHH--------HHHHHHHhccC----CCccEEEEccCCCC----C-----
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQC----PKLKAIVQYEGKPD----K----- 134 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~----~~~~~~i~~~~~~~----~----- 134 (305)
+++|+++.++.+++..++++++++++|+++... ...+.+..... .....++.+..... .
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE 250 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence 999999999999999999999999999986521 01122221111 11122222221100 0
Q ss_pred CCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHH-HHHHHHhhccCCCCceEEEe
Q psy2835 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISF 213 (305)
Q Consensus 135 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~l~~ 213 (305)
.....|+++..... ... ......++++++|+|||||||.||||+++|.+++.. .......+++ +++|++++.
T Consensus 251 ~~~~~~~~~~~~~~--~~~----~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~ 323 (666)
T PLN02654 251 GRDVWWQDVVPNYP--TKC----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDY-KPTDVYWCT 323 (666)
T ss_pred CCcccHHHHhhcCC--CCC----CceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCC-CCCcEEEEc
Confidence 01122444432211 000 011246799999999999999999999999998653 3455566788 999999999
Q ss_pred CchhHHHHHHHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHH
Q psy2835 214 LPLSHIAAQTVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWI 288 (305)
Q Consensus 214 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~ 288 (305)
.|++|+.|..+.++.+|..|+++++.+. ...+..+++.|++++||+++.+|++++.|.+... ....++++||.++
T Consensus 324 ~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~ 403 (666)
T PLN02654 324 ADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLG 403 (666)
T ss_pred CCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEE
Confidence 9999999988878999999999999874 2337899999999999999999999999987643 2345678888654
Q ss_pred H
Q psy2835 289 A 289 (305)
Q Consensus 289 ~ 289 (305)
.
T Consensus 404 ~ 404 (666)
T PLN02654 404 S 404 (666)
T ss_pred E
Confidence 4
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=286.67 Aligned_cols=290 Identities=17% Similarity=0.207 Sum_probs=228.1
Q ss_pred hHHHHHHH-hcccceeeecc----CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLE-RYHSVCIIGFN----APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~-~~~~~~~~~~~----~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
+++++.+. .+|++.++.+. .+.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 47 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~-v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~ 125 (570)
T PRK04319 47 EAIDRHADGGRKDKVALRYLDASRKEKYTYKELKEL-SNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIV 125 (570)
T ss_pred HHHHHhhccCCCCceEEEEECCCCceeecHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 45666655 46887777553 368999999995 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC-CCCcccHHHHHHhccCCCCchhH
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD-KPGVISWDELMELGRAAPDESLD 156 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 156 (305)
+|+++.++.+++.++++++++++++++... ..... ....+..+.++.+++... ..+...+.++..........
T Consensus 126 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 199 (570)
T PRK04319 126 GPLFEAFMEEAVRDRLEDSEAKVLITTPAL-LERKP--ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDI--- 199 (570)
T ss_pred cccccccCHHHHHHHHHccCCcEEEEChhh-hhccc--hhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcCCc---
Confidence 999999999999999999999999998763 22221 123455556665543321 13345566665433211111
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
....++++++++|||||||.||+|+++|+++..+.......+++ .++|++++..|++|.+|....++.++..|+++
T Consensus 200 ---~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~ 275 (570)
T PRK04319 200 ---EWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDL-HEDDVYWCTADPGWVTGTSYGIFAPWLNGATN 275 (570)
T ss_pred ---cccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCC-CCCceEEecCChHHhhCchHHHHHHHhcCceE
Confidence 13456899999999999999999999999999888877777888 89999999999999999888899999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHHH----------HHH-HhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIAN----------YAK-STSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~~----------~a~-~~g~~~~~~~ 303 (305)
++.+...++..+++.++++++|+++++|++++.|++... ....++++||.++.+ +.. .+|.++++.|
T Consensus 276 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~Y 355 (570)
T PRK04319 276 VIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNW 355 (570)
T ss_pred EEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEece
Confidence 998765558999999999999999999999999987532 223457777765433 223 3666666655
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=284.37 Aligned_cols=296 Identities=16% Similarity=0.173 Sum_probs=220.8
Q ss_pred hhHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
.+++++.++++|+..++.+.++++||+||.++ ++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++++|++
T Consensus 17 ~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~-~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~ 95 (579)
T PLN03102 17 ITFLKRASECYPNRTSIIYGKTRFTWPQTYDR-CCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPIN 95 (579)
T ss_pred HHHHHHHHHhCCCCeEEEECCcEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecc
Confidence 46788889999998888888899999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCC-----ccEEEEccCCCC----CCCcccHHHHHHhccCCCC
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK-----LKAIVQYEGKPD----KPGVISWDELMELGRAAPD 152 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~----~~~~~~~~~l~~~~~~~~~ 152 (305)
+.++.+++.++++.+++++++++.+. .+.+.++...++. ...++.++.... .....+++++.........
T Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (579)
T PLN03102 96 TRLDATSIAAILRHAKPKILFVDRSF-EPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPS 174 (579)
T ss_pred ccCCHHHHHHHHhccCCeEEEEChhh-HHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhccCCCCc
Confidence 99999999999999999999998763 3444444332221 112333332111 0123456665543221111
Q ss_pred chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHh
Q psy2835 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTV 232 (305)
Q Consensus 153 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~ 232 (305)
. .........++++++|+|||||||.||+|++||.++............+ ...++++..+|++|..|+.. .+.++..
T Consensus 175 ~-~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~-~~~~~~~ 251 (579)
T PLN03102 175 L-VARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEM-GTCPVYLWTLPMFHCNGWTF-TWGTAAR 251 (579)
T ss_pred c-cccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCC-CCCCeEEecCChhhhcchhH-HHHHHHh
Confidence 0 0000112356899999999999999999999999976655444444455 67789999999999988765 6778888
Q ss_pred CcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH----------HHHHHhhhHHHhh
Q psy2835 233 AATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA----------NYAKSTSLQHYMA 302 (305)
Q Consensus 233 G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~----------~~a~~~g~~~~~~ 302 (305)
|+++++.+... +..+++.|+++++|++.++|+++..|.+.......+.++++.+++ .+..+.|.++++.
T Consensus 252 g~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~ 330 (579)
T PLN03102 252 GGTSVCMRHVT-APEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHA 330 (579)
T ss_pred cCcEEeeccCC-hHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHHcCCeEEee
Confidence 99998887765 588999999999999999999999998764333333334443322 2333456666665
Q ss_pred h
Q psy2835 303 Y 303 (305)
Q Consensus 303 ~ 303 (305)
|
T Consensus 331 Y 331 (579)
T PLN03102 331 Y 331 (579)
T ss_pred c
Confidence 5
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=282.71 Aligned_cols=278 Identities=19% Similarity=0.197 Sum_probs=221.3
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|.+.++++|+..++.++++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+.+++++++||+++|++++++++
T Consensus 41 ~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~-~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~ 119 (600)
T PRK08279 41 DVFEEAAARHPDRPALLFEDQSISYAELNAR-ANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNT 119 (600)
T ss_pred HHHHHHHHhCCCCcEEEeCCCcccHHHHHHH-HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 5778888999998888889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++++++++++++++. .+.+.+..........++..++ ........+.++.......+.. ........
T Consensus 120 ~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 196 (600)
T PRK08279 120 QQRGAVLAHSLNLVDAKHLIVGEEL-VEAFEEARADLARPPRLWVAGG-DTLDDPEGYEDLAAAAAGAPTT-NPASRSGV 196 (600)
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHH-HHHHHHHhhhhcccceEEEecC-ccccccccHHHHhhhcccCCcc-CCCcccCC
Confidence 9999999999999999999999873 4555555444433333332222 1111122344444322211111 00111234
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
..+++++|+|||||||.||||++||+++..++......+++ +++|++++.+|++|.+|+...++.++..|+++++.+.+
T Consensus 197 ~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~ 275 (600)
T PRK08279 197 TAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRL-TPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKF 275 (600)
T ss_pred CccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCC-CCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCC
Confidence 56899999999999999999999999999999888888888 99999999999999999988778888999999998876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKR 286 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~ 286 (305)
. +..+++.++++++|++.++|++++.+++..........++|.
T Consensus 276 ~-~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~ 318 (600)
T PRK08279 276 S-ASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRL 318 (600)
T ss_pred C-HHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeE
Confidence 6 689999999999999999999999988754333333445543
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=287.73 Aligned_cols=280 Identities=15% Similarity=0.183 Sum_probs=217.2
Q ss_pred hhHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
..+|++.++++|+..++.+.+ +.+||+||.++ +.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 60 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 138 (625)
T TIGR02188 60 YNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHRE-VCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA 138 (625)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence 346667777788877775532 47999999996 99999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccCC-CccEEEEccCCCCC-----CCcccHH
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQCP-KLKAIVQYEGKPDK-----PGVISWD 141 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----~~~~~~~ 141 (305)
+++|+++.++.+++.+++++++++++|+++.. ..+.+.+....++ .++.++.++..... .....++
T Consensus 139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (625)
T TIGR02188 139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWH 218 (625)
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccHH
Confidence 99999999999999999999999999998642 1233444444455 45656655432211 1123455
Q ss_pred HHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHH-HHHhhccCCCCceEEEeCchhHHH
Q psy2835 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIA 220 (305)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~~~~ 220 (305)
++......... .....++++++|+|||||||.||||+++|.++..+... ....+++ .++|++++..|++|+.
T Consensus 219 ~~~~~~~~~~~------~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~ 291 (625)
T TIGR02188 219 DLMAKASAYCE------PEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDI-KDGDIFWCTADVGWIT 291 (625)
T ss_pred HHHhhcCCCCC------ceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCC-CCCcEEEECCCchhhh
Confidence 55543211111 12346789999999999999999999999998765433 3445677 8899999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 221 AQTVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 221 g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
|..+.++.++..|+++++.+. ..++..+++.++++++|++.++|++++.|.+.... ...++++||.++.
T Consensus 292 g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~ 365 (625)
T TIGR02188 292 GHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGS 365 (625)
T ss_pred ccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEE
Confidence 887778999999999999863 22378999999999999999999999999875432 2346778876544
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=280.81 Aligned_cols=292 Identities=17% Similarity=0.176 Sum_probs=233.1
Q ss_pred hHHHHHHHhcccceeeeccC-CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~-~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+++++.++++|+..++.+.+ +.+||+|+.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 27 ~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~-v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 105 (547)
T PRK06087 27 DYWQQTARAMPDKIAVVDNHGASYTYSALDHA-ASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLL 105 (547)
T ss_pred HHHHHHHHHCCCceEEEcCCCCEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccc
Confidence 57888889999977776654 79999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHH
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
+..+.+++.++++..+++++++++.. ..+.+.+...+.+..+.++.++.........++.++.........
T Consensus 106 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 180 (547)
T PRK06087 106 PSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTT----- 180 (547)
T ss_pred hhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCcccC-----
Confidence 99999999999999999999997631 234444444555566666655543322233355555443221110
Q ss_pred hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 158 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
......+++++|+|||||||.||+|.+||.++..........+++ .++|++++..|++|.+|+...++.++..|++++
T Consensus 181 -~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~ 258 (547)
T PRK06087 181 -AITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNL-TWQDVFMMPAPLGHATGFLHGVTAPFLIGARSV 258 (547)
T ss_pred -CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCC-CCCCeEEEecchHHHHHHHHHHHHHHhcCCEEE
Confidence 113457899999999999999999999999999888777777788 899999999999999998888999999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
+.+... +..+++.++++++|++..+|+.+..+++.......+++++|.++.+ ...+.|+++++.|
T Consensus 259 ~~~~~~-~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~Y 333 (547)
T PRK06087 259 LLDIFT-PDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVY 333 (547)
T ss_pred ecCCCC-HHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEe
Confidence 998776 6899999999999999998888777777655555567777765433 2334566666655
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=279.81 Aligned_cols=285 Identities=14% Similarity=0.114 Sum_probs=225.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|.+.++++|+..++.+.++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~ 125 (537)
T PRK13382 47 SGFAIAAQRCPDRPGLIDELGTLTWRELDER-SDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNT 125 (537)
T ss_pred HHHHHHHHhCCCCeEEEeCCCeecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCc
Confidence 5688899999998888888889999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++.+++++++++.+. ...+.......+....++...+. .....++++........ ...
T Consensus 126 ~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~ 193 (537)
T PRK13382 126 SFAGPALAEVVTREGVDTVIYDEEF-SATVDRALADCPQATRIVAWTDE---DHDLTVEVLIAAHAGQR--------PEP 193 (537)
T ss_pred ccCHHHHHHHHHhcCCCEEEEchhh-HHHHHHHHhhccccceEEEecCC---cccccHHHHhhccCcCC--------CCC
Confidence 9999999999999999999998764 34444433333333333333221 11223444443221111 012
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||||+++|+++..+.......+.+ ..+++++...|++|.+|+. .++.++..|+++++.+.+
T Consensus 194 ~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~~-~~~~~l~~g~~~~~~~~~ 271 (537)
T PRK13382 194 TGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPW-RAEEPTVIVAPMFHAWGFS-QLVLAASLACTIVTRRRF 271 (537)
T ss_pred CCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCC-CCCCeEEEecChHhhhHHH-HHHHHHhcCcEEEECCCc
Confidence 46788999999999999999999999998888877777778 8899999999999999984 589999999999988766
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+ +..+++.++++++|++.++|++++.|++.... ...+++++|.++.+ |.+.+|.++++.|
T Consensus 272 ~-~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~Y 344 (537)
T PRK13382 272 D-PEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNY 344 (537)
T ss_pred C-HHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecc
Confidence 5 79999999999999999999999999875422 23345567654333 4445676676665
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=276.55 Aligned_cols=290 Identities=20% Similarity=0.333 Sum_probs=242.5
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++.+|+..++.+.++.+||+||.++ +.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++|+++
T Consensus 10 ~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~ 88 (521)
T PRK06187 10 RILRHGARKHPDKEAVYFDGRRTTYAELDER-VNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINI 88 (521)
T ss_pred HHHHHHHHHCCCceEEEeCCceEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeccc
Confidence 5788999999998888888889999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---CCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
..+.+++..+++..++++++++... .+.+.++....+..+.++..++... ......+.++......... .
T Consensus 89 ~~~~~~~~~~i~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 161 (521)
T PRK06187 89 RLKPEEIAYILNDAEDRVVLVDSEF-VPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFD------F 161 (521)
T ss_pred CCCHHHHHHHHHhcCCeEEEEcchH-HHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCC------C
Confidence 9999999999999999999999874 5667777777777777776655432 1344556666543321111 1
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.....+++++++|||||||.||+|.+||.++..........+++ ..+|++++..|++|.+++.. .+.++..|+++++.
T Consensus 162 ~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~-~~~~l~~G~~~v~~ 239 (521)
T PRK06187 162 PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL-SRDDVYLVIVPMFHVHAWGL-PYLALMAGAKQVIP 239 (521)
T ss_pred CCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCC-CCCCEEEEeCCchHHhhHHH-HHHHHHhCCEEEec
Confidence 13466889999999999999999999999999988888888888 99999999999999998876 45599999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.. .+..+++.++++++|++.++|+++..|.+.......+++++|.++.+ +...+|+++++.|
T Consensus 240 ~~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~Y 313 (521)
T PRK06187 240 RRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGY 313 (521)
T ss_pred CCC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheee
Confidence 887 47999999999999999999999999988776656677888876543 2223477776655
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=269.85 Aligned_cols=271 Identities=23% Similarity=0.306 Sum_probs=210.8
Q ss_pred HHHHHHhcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC
Q psy2835 5 LKLGLERYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83 (305)
Q Consensus 5 l~~~~~~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~ 83 (305)
++++++++||..++.+ .++.+||+|+.++ ++++|..|.++|+++||+|+++++|+.+++++++||+++|++++|++|.
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~-v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~ 79 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYER-VRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS 79 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHH-HHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHH-HHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence 5789999999988888 8899999999996 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEE----eChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 84 NSPEACLHCLVTSDANICVV----EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
++.+++.++++.++++++++ +... ...+.+..........++.++.... ...+.+...........
T Consensus 80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----- 149 (417)
T PF00501_consen 80 LSEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQEDPSSSIIILDRDDL----PKKEALKSASLSDEPQS----- 149 (417)
T ss_dssp SSHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTTSTTTEEEEEESHSSC----TTCHHHHHHHHCHCSHS-----
T ss_pred cccccccccccccceeEEEEeccccccc-cccchhhhccccccccccccccccc----ccccccccccccccccc-----
Confidence 99999999999999999997 3432 3444444444334444554443221 11111111110000000
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH--HhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII--QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
....++++++++|||||||.||+|.+||++++..+.... ...++ + |++++.+|++|.+|+...++.++..|++++
T Consensus 150 ~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~-~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (417)
T PF00501_consen 150 PEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGL-G--DRILSFLPLSHIFGLISALLAALFSGATLV 226 (417)
T ss_dssp TTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTT-T--TEEEESS-TTSHHHHHHHHHHHHHCTSEEE
T ss_pred CCCCccceeEeecccccccccccccccccccccccccccccccccc-C--ceEEeecccccccccccccccccccccccc
Confidence 000469999999999999999999999999999887754 22333 3 699999999999999777999999999999
Q ss_pred EeCCccc--hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh----hcccChHHHHHH
Q psy2835 238 FADKNAL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV----GKQTTGVKRWIA 289 (305)
Q Consensus 238 ~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----~~~~~sl~~~~~ 289 (305)
+.+.... ++.+++.+++++||++.++|+++..++++.+.. ..++++||.+++
T Consensus 227 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~ 284 (417)
T PF00501_consen 227 LPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVIS 284 (417)
T ss_dssp EESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEE
T ss_pred ccccccccccccchhccccccccccccccccccccccccccccccccccccccccccc
Confidence 9998764 567899999999999999999999999844332 347888886544
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=280.07 Aligned_cols=283 Identities=20% Similarity=0.303 Sum_probs=218.5
Q ss_pred hHHHHHHHhcccceeeec---------------------------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Q psy2835 3 AFLKLGLERYHSVCIIGF---------------------------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCI 55 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~---------------------------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i 55 (305)
++|++.++++|+..++.+ +++.+||+|+.++ ++++|+.|.++|+++||+|+|
T Consensus 73 ~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~-~~~lA~~L~~~Gv~~gd~V~i 151 (700)
T PTZ00216 73 QRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWER-IVNFGRGLAELGLTKGSNVAI 151 (700)
T ss_pred HHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHH-HHHHHHHHHHhCCCCCCEEEE
Confidence 678899999999776655 2468999999996 999999999999999999999
Q ss_pred EecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhcc--CCCccEEEEccCCCC
Q psy2835 56 IGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQ--CPKLKAIVQYEGKPD 133 (305)
Q Consensus 56 ~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~ 133 (305)
+++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++.+. ...+.+.... .+.. .++.+++...
T Consensus 152 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~-~~~l~~~~~~~~~~~~-~ii~~~~~~~ 229 (700)
T PTZ00216 152 YEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKN-VPNLLRLMKSGGMPNT-TIIYLDSLPA 229 (700)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHH-HHHHHHhhhhccCCce-EEEEECCCcc
Confidence 9999999999999999999999999999999999999999999999998763 3444333221 2232 4555543221
Q ss_pred C-----CCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-----cc
Q psy2835 134 K-----PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-----KL 203 (305)
Q Consensus 134 ~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~ 203 (305)
. ....+|+++...+...... . .......++++++|+|||||||.||||++||+++.+++......+ .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~ 307 (700)
T PTZ00216 230 SVDTEGCRLVAWTDVVAKGHSAGSH-H-PLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPP 307 (700)
T ss_pred ccccCCceEEEHHHHHHhCCccccc-c-ccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCC
Confidence 1 2245677777654211110 0 001234679999999999999999999999999999887765543 23
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHH-------HhhhcCCcEEEechHHHHHHHHHHHH
Q psy2835 204 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLIN-------TLLEVRPHVFLAVPRVWEKIHEKLMA 276 (305)
Q Consensus 204 ~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-------~i~~~~vt~~~~~P~~~~~l~~~~~~ 276 (305)
.++|++++.+|++|+++... ....+..|+++++.+ +..+.+ .+++++||++.++|.+++.+.+....
T Consensus 308 -~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~ 381 (700)
T PTZ00216 308 -EEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFGS----PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEA 381 (700)
T ss_pred -CCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEECC----HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHH
Confidence 67899999999999998765 456677888877642 334444 68899999999999999999987766
Q ss_pred hhcccChHHHHHHHHHHHhh
Q psy2835 277 VGKQTTGVKRWIANYAKSTS 296 (305)
Q Consensus 277 ~~~~~~sl~~~~~~~a~~~g 296 (305)
...+.+.++..++.++...+
T Consensus 382 ~~~~~~~~~~~~~~~a~~~~ 401 (700)
T PTZ00216 382 KLPPVGSLKRRVFDHAYQSR 401 (700)
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 66667788888887766544
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=289.67 Aligned_cols=281 Identities=14% Similarity=0.194 Sum_probs=227.8
Q ss_pred hHHHHHHHhcccceeeec---cC--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIGF---NA--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~---~~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
+++.+.++++|+..++.. .+ +++||+|+.++ ++++|.+|.++|+++||+|+|+++|+++|+++.+||+.+|+++
T Consensus 431 dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~-V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~ 509 (1452)
T PTZ00297 431 EMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDAR-ARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTT 509 (1452)
T ss_pred HHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 578888999999877753 12 57999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC--------C--CCcccHHHHHHhc
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD--------K--PGVISWDELMELG 147 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~--~~~~~~~~l~~~~ 147 (305)
+|+++ +.+++.+++++++++++|++.+. ++.+.++.. +.+++++++++... . ....+|+++...+
T Consensus 510 VPly~--t~~eL~yIL~~S~akvVfv~~~~-l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G 584 (1452)
T PTZ00297 510 LPLVG--KGSTMRTLIDEHKIKVVFADRNS-VAAILTCRS--RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKG 584 (1452)
T ss_pred EeCCC--CHHHHHHHHHhcCCcEEEEchhH-HHHHHhhcc--cCCcEEEEECCCcccccccccccCCcceeeHHHHHhcC
Confidence 99975 46799999999999999998763 566655433 36888888864210 0 1245688888765
Q ss_pred cCCCCchhHHhhhccCCCceeEEEe---ccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHH
Q psy2835 148 RAAPDESLDRVLETIATNECCTLVY---TSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAA 221 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g 221 (305)
..... + ......++|++.|+| ||||||.||||++||+|++.++....... .. .++|++++.+|++|+++
T Consensus 585 ~~~~~-~---~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~-~~~D~~Ls~LPLaHI~e 659 (1452)
T PTZ00297 585 RLCPV-P---LKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSS-FKKHLMVHFTPFAMLFN 659 (1452)
T ss_pred cccCc-c---ccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCC-CCCCEEEEechHHHHHH
Confidence 32111 1 111336789999986 99999999999999999999998865532 34 67899999999999999
Q ss_pred HHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhhHH
Q psy2835 222 QTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQH 299 (305)
Q Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~~~ 299 (305)
.+. .+.++..|+++.+. ++..+++.|+++|||++.++|.+++++.+.........+.++..++.||.+.+.+.
T Consensus 660 r~~-~~~~l~~G~~I~~~----d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~ 732 (1452)
T PTZ00297 660 RVF-VLGLFAHGSAVATV----DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRL 732 (1452)
T ss_pred HHH-HHHHHHcCCEEEeC----CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 755 67788999998742 26899999999999999999999999988777666667889999999998876543
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=284.34 Aligned_cols=279 Identities=15% Similarity=0.189 Sum_probs=216.8
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+|++.++++|+..++.+.+ +.+||+||.++ +.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 71 ~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 71 NCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHRE-VCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 46777777889877776532 37999999996 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHH--------HHHHHHHhccCCCccEEEEccCCCCC-----CCcccHHHH
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCPKLKAIVQYEGKPDK-----PGVISWDEL 143 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l 143 (305)
++|+++.++.+++.+++++++++++|+++... .+.+.+....++..+.++.++..... .....++++
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHEL 229 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHH
Confidence 99999999999999999999999999976421 13333444445566666655432211 112335555
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHH-HHHhhccCCCCceEEEeCchhHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQ 222 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~~~~g~ 222 (305)
......... .....++++++|+|||||||.||||+++|.++..+... ....+++ .++|++++..|++|+.+.
T Consensus 230 ~~~~~~~~~------~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~ 302 (637)
T PRK00174 230 VAGASDECE------PEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDY-KDGDVYWCTADVGWVTGH 302 (637)
T ss_pred HhhcCCCCC------ccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCC-CCCcEEEEcCCchHhhhh
Confidence 542211111 11346789999999999999999999999998765433 3344677 889999999999999998
Q ss_pred HHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 223 TVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 223 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
.+.++.++..|+++++.+. ..++..+++.++++++|++.++|++++.|++.... ...++++||.++.
T Consensus 303 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~ 374 (637)
T PRK00174 303 SYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGS 374 (637)
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEE
Confidence 7778999999999999753 22368999999999999999999999999875432 2345778876544
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=281.54 Aligned_cols=281 Identities=18% Similarity=0.214 Sum_probs=211.2
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
++|+..++++|+..++.+.+ +.+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 53 ~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v 131 (624)
T PRK12582 53 HLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRA-VDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVP 131 (624)
T ss_pred HHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCe
Confidence 56788889999977776532 58999999995 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCH-----HHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 77 AAGMYTTNSP-----EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 77 ~v~i~~~~~~-----~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
++|++|.++. +++.+++++++++++|+++.............. ..+ ++.++..........++++......
T Consensus 132 ~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~~~~~~~~~~~~~-- 207 (624)
T PRK12582 132 AAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLL-DVT-VVHVTGPGEGIASIAFADLAATPPT-- 207 (624)
T ss_pred EeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhc-Cce-EEEEcCCCcccccccHHHHhhcCCc--
Confidence 9999999885 899999999999999998753222222221111 222 3333332211223456665543211
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCC---CceEEEeCchhHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA---ALSVISFLPLSHIAAQTVDIYS 228 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~---~~~~l~~~pl~~~~g~~~~~~~ 228 (305)
...........++++++|+|||||||.||||++||+++..+.......... .. .+++++++|++|.+|+...++.
T Consensus 208 -~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~~~~~~~l~~lPl~h~~g~~~~~~~ 285 (624)
T PRK12582 208 -AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPR-EPDPPPPVSLDWMPWNHTMGGNANFNG 285 (624)
T ss_pred -chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccc-cCCCCCceEEEechHHHHHhHHHHHHH
Confidence 111111123457899999999999999999999999999887765554444 33 5899999999999998777888
Q ss_pred HHHhCcEEEEeCCccch---hHHHHHhhhcCCcEEEechHHHHHHHHHHHH----hhcccChHHHHHHH
Q psy2835 229 VMTVAATLWFADKNALK---GSLINTLLEVRPHVFLAVPRVWEKIHEKLMA----VGKQTTGVKRWIAN 290 (305)
Q Consensus 229 ~l~~G~~~v~~~~~~~~---~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~~~sl~~~~~~ 290 (305)
++..|+++++.+....+ ..+++.++++++|++.++|.++.+|++.... ...++++||.++++
T Consensus 286 ~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~g 354 (624)
T PRK12582 286 LLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYG 354 (624)
T ss_pred HHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEec
Confidence 99999999997643322 3567778999999999999999999875422 23456788877655
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=277.81 Aligned_cols=285 Identities=22% Similarity=0.319 Sum_probs=227.2
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+ .++.+||+||.++ ++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 20 ~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l 98 (559)
T PRK08315 20 QLLDRTAARYPDREALVYRDQGLRWTYREFNEE-VDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTI 98 (559)
T ss_pred HHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEec
Confidence 577888899999777655 5668999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccC-------------CCccEEEEccCCCCCCCcccHHHH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQC-------------PKLKAIVQYEGKPDKPGVISWDEL 143 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~~~~l 143 (305)
+|..+.+++.++++.++++++++++... .+.+.+...++ +..+.++.++.. ...+...++++
T Consensus 99 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 177 (559)
T PRK08315 99 NPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE-KHPGMLNFDEL 177 (559)
T ss_pred CccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeeccc-CCcccccHHHH
Confidence 9999999999999999999999986521 12222222211 333444444332 12334566666
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
.....................+++++++|||||||.||+|.+||+++..++......+++ .++|+++...|++|.+|+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~ 256 (559)
T PRK08315 178 LALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL-TEEDRLCIPVPLYHCFGMV 256 (559)
T ss_pred HhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCC-CCCceEEEecCcHHHHHHH
Confidence 543321111111111123467889999999999999999999999999988888888888 9999999999999999998
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..++.++..|+++++......|..+++.++++++|++.++|+++..++........++++||.++++
T Consensus 257 ~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~ 323 (559)
T PRK08315 257 LGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMA 323 (559)
T ss_pred HHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEec
Confidence 8899999999999966555457999999999999999999999999888766566678889876554
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=274.35 Aligned_cols=291 Identities=19% Similarity=0.215 Sum_probs=226.9
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++.+||+||.++ +.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++
T Consensus 25 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~-v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~ 103 (542)
T PRK06155 25 AMLARQAERYPDRPLLVFGGTRWTYAEAARA-AAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINT 103 (542)
T ss_pred HHHHHHHHHCCCCeEEEeCCccccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEecc
Confidence 5789999999998888888999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.+. ...+.+........+.++.++..........+........ .... .....
T Consensus 104 ~~~~~~l~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~ 177 (542)
T PRK06155 104 ALRGPQLEHILRNSGARLLVVEAAL-LAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPL-DAPA----PAAAV 177 (542)
T ss_pred ccCHHHHHHHHHhcCceEEEEChhh-HHHHHHhcccccCcceEEEecCccccccccccchhhhccc-CCCC----CCCCC
Confidence 9999999999999999999998763 4555444333333445554443221000011111000000 0000 01133
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||+|+++|.++..........+++ .+++++++.+|++|..++.. ++.++..|+++++.+..
T Consensus 178 ~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~ 255 (542)
T PRK06155 178 QPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEI-GADDVLYTTLPLFHTNALNA-FFQALLAGATYVLEPRF 255 (542)
T ss_pred CCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCC-CCCCEEEEecCHHHHHHHHH-HHHHHHcCceEEeeCCC
Confidence 56899999999999999999999999999887777777888 89999999999999998765 79999999999998876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH---------HHHHHHHhhhHHHhhh
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW---------IANYAKSTSLQHYMAY 303 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~---------~~~~a~~~g~~~~~~~ 303 (305)
. +..+++.++++++|++.++|+++..|.+.......+.+++|.+ .-.+...+|+++++.|
T Consensus 256 ~-~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~v~~~Y 324 (542)
T PRK06155 256 S-ASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDLLDGY 324 (542)
T ss_pred C-HHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcCCCHHHHHHHHHHcCCCEEeee
Confidence 5 7999999999999999999999999887654444445555432 2234445677777665
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=276.62 Aligned_cols=294 Identities=15% Similarity=0.144 Sum_probs=231.3
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+++++.++++|++.++.. .++.+||+||.++ +.++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 26 ~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~-~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 104 (538)
T TIGR03208 26 DHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCR-VDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAV 104 (538)
T ss_pred HHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEE
Confidence 567888899999777654 2368999999995 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (305)
++|+++..+.+++.++++.++++++++++... ...+.++....+..+.++..+.. +...++++.........
T Consensus 105 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 180 (538)
T TIGR03208 105 LNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD----GDDSFDRVLMTPERDDT 180 (538)
T ss_pred EeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC----CCcCHHHHhhccccccc
Confidence 99999999999999999999999999987531 22333344445555566655432 22334444432110000
Q ss_pred chh--HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 153 ESL--DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 153 ~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
... ........++++++++|||||||.||+|+++|+++...+......+++ ..+|++++.+|++|..|++..++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l 259 (538)
T TIGR03208 181 PDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL-GGGDVILMASPMAHQTGFMYGLMMPL 259 (538)
T ss_pred cccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCC-CCCCeEEEeCCchhHHHHHHHHHHHH
Confidence 000 000113467899999999999999999999999999998888888888 89999999999999999888899999
Q ss_pred HhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHH
Q psy2835 231 TVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQH 299 (305)
Q Consensus 231 ~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~ 299 (305)
..|+++++.+..+ +..+++.++++++|++.++|+++..+.........+++++|.++++ +.+.+|.++
T Consensus 260 ~~g~~~~~~~~~~-~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~ 338 (538)
T TIGR03208 260 ILNATAVLQDIWN-PARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALI 338 (538)
T ss_pred HcCCEEEecCccC-HHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcCCeE
Confidence 9999999987665 7999999999999999999999999887655455567788766543 233456666
Q ss_pred Hhhh
Q psy2835 300 YMAY 303 (305)
Q Consensus 300 ~~~~ 303 (305)
++.|
T Consensus 339 ~~~Y 342 (538)
T TIGR03208 339 VSAW 342 (538)
T ss_pred Eeee
Confidence 6655
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=274.38 Aligned_cols=266 Identities=15% Similarity=0.169 Sum_probs=218.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+.+++.++++|++.++.++++.+||+|+.++ ++++|+.|.+ .|+.+||+|+++++|+++++++++||+++|++++|++
T Consensus 6 ~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~-~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~ 84 (496)
T PRK06839 6 YWIEKRAYLHPDRIAIITEEEEMTYKQLHEY-VSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLN 84 (496)
T ss_pred HHHHHHHHHCCCCeEEEECCceEEHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecC
Confidence 5678889999998888888999999999996 9999999985 7999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+..+.+++..++++.+++.++++++. ...+.++.... ....++.+. +++++....... ...
T Consensus 85 ~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~--------~~~ 145 (496)
T PRK06839 85 IRLTENELIFQLKDSGTTVLFVEKTF-QNMALSMQKVS-YVQRVISIT---------SLKEIEDRKIDN--------FVE 145 (496)
T ss_pred cccCHHHHHHHHHhcCceEEEEcHHH-HHHHHHhhhcc-CcceEEEec---------chHhhhccCCCC--------CCC
Confidence 99999999999999999999998763 34444433322 122233222 122222211110 013
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++++++|+|||||||.||+|.++|+++..........+++ ..+|++++.+|++|.+|+...++.++..|+++++.+.
T Consensus 146 ~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 224 (496)
T PRK06839 146 KNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDL-TMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRK 224 (496)
T ss_pred CCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCC-CCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccC
Confidence 356899999999999999999999999998777666667778 8999999999999999988777899999999998876
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.. +..+++.++++++|++.++|.+++.+++.......+++++|.++.+
T Consensus 225 ~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 272 (496)
T PRK06839 225 FE-PTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNG 272 (496)
T ss_pred CC-HHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEEC
Confidence 65 7999999999999999999999999998766656677888765443
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=261.38 Aligned_cols=268 Identities=20% Similarity=0.173 Sum_probs=226.1
Q ss_pred hHHHHHHHhcccceeeeccC--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++.+.++++|+++++.+.+ +.+||+|+.++ ++++|+.|...|++.||.|+++++|.++|+.+.+|++++|++...|
T Consensus 81 ~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~-s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~i 159 (649)
T KOG1179|consen 81 ELFLSQVRRQPDKPAIIYEGPFQSLTFAELDAR-SNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFI 159 (649)
T ss_pred HHHHHHHHhCCCccEEEEeCCCceeeHHHHHHH-HHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeee
Confidence 56788899999988888866 69999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCc-cEEEEccCCCCCCCcccHHHHHHhccCCCCchhH-Hh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL-KAIVQYEGKPDKPGVISWDELMELGRAAPDESLD-RV 158 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 158 (305)
|+++..+.+.|.++-+++++++++.+. .+.+.++.+..... -.+...+... .....+++....+..+..+.+ ..
T Consensus 160 NtNlR~~~LlHsi~~s~aralv~~~el-~~~~~e~~~~l~~~~i~~~~~~~~~---~~~g~~~L~~~l~~~~~~~vp~~~ 235 (649)
T KOG1179|consen 160 NTNLRGEPLLHSITVSGARALVVGPEL-LNALEEILPLLIKNGIHVFSLGPTS---VPDGIESLLAKLSAAPKHPVPVST 235 (649)
T ss_pred ccccccchhhhhhhhcCceEEEECHHH-HHHHHhcchhhhhccceEEecCCCC---CCchHHHHHHhhcccccCCCCccc
Confidence 999999999999999999999999884 56777764444333 2223222222 223344555554444444433 22
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.......++++.+|||||||.||+.++||.............+++ +++|+++..+|+||..|.+.++..++..|+|+|+
T Consensus 236 ~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~-~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vl 314 (649)
T KOG1179|consen 236 RSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGM-TADDVVYTTLPLYHSAAGILGIGGCLLHGATVVL 314 (649)
T ss_pred CCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CccceEEEcchhHHHHHHHHHHHHHHhcCceEEE
Confidence 334567899999999999999999999999999988888889999 9999999999999999999999999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV 277 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 277 (305)
-+++. ...||+...+|+||++.-.-.+.+.|++.+..+
T Consensus 315 rkKFS-AS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~ 352 (649)
T KOG1179|consen 315 RKKFS-ASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSP 352 (649)
T ss_pred ecccc-hhhhHHHHHHhCCeeeehHHHHHHHHHcCCCCh
Confidence 99998 599999999999999999999999999865443
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=276.87 Aligned_cols=292 Identities=20% Similarity=0.265 Sum_probs=231.5
Q ss_pred hhHHHHHHHhcccceeeecc--C--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 2 KAFLKLGLERYHSVCIIGFN--A--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~--~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
.++|++.+.++|+..++.+. + +.+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~ 91 (539)
T PRK07008 13 SSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERR-AKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVC 91 (539)
T ss_pred HHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEE
Confidence 47899999999998887641 2 57999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC----CCcccHHHHHHhccCCCCc
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----PGVISWDELMELGRAAPDE 153 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 153 (305)
+|++|..+.+++..+++.+++++++++.++ .+.+.++.......+.++...+.... ....+++++..........
T Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (539)
T PRK07008 92 HTINPRLFPEQIAYIVNHAEDRYVLFDLTF-LPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDYDW 170 (539)
T ss_pred eecccccCHHHHHHHHhccCCcEEEEcchh-HHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCcCc
Confidence 999999999999999999999999998874 45566665556666665544432211 2245566665432211110
Q ss_pred hhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHH--HHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHH
Q psy2835 154 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA--CIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 231 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~ 231 (305)
....++++++++|||||||.||+|++||.++..+.. .....+++ ..+|++++..|++|.+++.. .+.++.
T Consensus 171 ------~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~-~~~~l~ 242 (539)
T PRK07008 171 ------PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGL-SARDAVLPVVPMFHVNAWGL-PYSAPL 242 (539)
T ss_pred ------ccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCC-CCCceEEecCchHHhhhHHH-HHHHHh
Confidence 134568899999999999999999999999875432 23345667 88999999999999887655 578889
Q ss_pred hCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHH
Q psy2835 232 VAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHY 300 (305)
Q Consensus 232 ~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~ 300 (305)
.|+++++.+...++..+++.+++++||++.++|+++..++++......+++++|.++++ +....|++++
T Consensus 243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~ 322 (539)
T PRK07008 243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVI 322 (539)
T ss_pred cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCCcee
Confidence 99999998654457899999999999999999999999998776666678888866543 3445677777
Q ss_pred hhh
Q psy2835 301 MAY 303 (305)
Q Consensus 301 ~~~ 303 (305)
+.|
T Consensus 323 ~~Y 325 (539)
T PRK07008 323 HAW 325 (539)
T ss_pred ccc
Confidence 766
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=284.23 Aligned_cols=285 Identities=13% Similarity=0.142 Sum_probs=206.4
Q ss_pred hhHHHHHHHh--cccceeeecc------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 2 KAFLKLGLER--YHSVCIIGFN------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 2 ~~~l~~~~~~--~~~~~~~~~~------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
..+|++.+++ .|+..++.+. .+++||+||.++ ++++|+.|+++|+++||+|+++++|+++++++++||+++
T Consensus 62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~ 140 (647)
T PTZ00237 62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEK-VCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARI 140 (647)
T ss_pred HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 3566666543 5676666542 257999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccCC-CccEEEEccCCC------------
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQCP-KLKAIVQYEGKP------------ 132 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~~-~~~~~i~~~~~~------------ 132 (305)
|++++|+++.++.+++.+++++++++++|+++.. ..+.+.+...... ...+++.+....
T Consensus 141 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 220 (647)
T PTZ00237 141 GATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIET 220 (647)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccc
Confidence 9999999999999999999999999999997521 1223333322111 123444331110
Q ss_pred --CCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhH-HHHHHHHHHHhhccCCCCce
Q psy2835 133 --DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN-ITFNAACIIQYFKLESAALS 209 (305)
Q Consensus 133 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~ 209 (305)
..++...|++++.........+. .......++++++|+|||||||.||||+++|.+ +............. ..+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~-~~~d~ 298 (647)
T PTZ00237 221 IPTIPNTLSWYDEIKKIKENNQSPF-YEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEK-DIPTV 298 (647)
T ss_pred cCCCcccccHHHHHhhhccccCCCC-CCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCC-CCCcE
Confidence 00123446665543211000000 001234679999999999999999999999998 44433333444555 77899
Q ss_pred EEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc-c----hhHHHHHhhhcCCcEEEechHHHHHHHHHHH-----Hhhc
Q psy2835 210 VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA-L----KGSLINTLLEVRPHVFLAVPRVWEKIHEKLM-----AVGK 279 (305)
Q Consensus 210 ~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~-~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~ 279 (305)
+++..|++|+.+.. .++.++..|+++++.+... . +..+++.+++++||++.++|++++.|.+... ....
T Consensus 299 ~~~~~~~~w~~~~~-~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~ 377 (647)
T PTZ00237 299 VFSHSSIGWVSFHG-FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKY 377 (647)
T ss_pred EEEcCCCceEeeHH-HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccccccccc
Confidence 99999999986654 4889999999999986421 1 4789999999999999999999999987532 1345
Q ss_pred ccChHHHHHHH
Q psy2835 280 QTTGVKRWIAN 290 (305)
Q Consensus 280 ~~~sl~~~~~~ 290 (305)
++++||.++++
T Consensus 378 ~l~~Lr~i~~~ 388 (647)
T PTZ00237 378 DLSNLKEIWCG 388 (647)
T ss_pred CcchheEEEec
Confidence 68888876554
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=277.28 Aligned_cols=295 Identities=19% Similarity=0.266 Sum_probs=227.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|++|
T Consensus 36 ~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~-~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~ 114 (573)
T PRK05605 36 DLYDNAVARFGDRPALDFFGATTTYAELGKQ-VRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNP 114 (573)
T ss_pred HHHHHHHHHCCCCeEEEeCCCcccHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCc
Confidence 5678888999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC--------------------------CCCC
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--------------------------DKPG 136 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------------~~~~ 136 (305)
.++.+++.+++++.+++++|++++. ...+.++.... ..+.++.++... ...+
T Consensus 115 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (573)
T PRK05605 115 LYTAHELEHPFEDHGARVAIVWDKV-APTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPG 192 (573)
T ss_pred CCCHHHHHHHHhccCCcEEEechhh-HHHHHhhhhcc-ccceeEeeecccccccccccccccccccccccccccccCCCc
Confidence 9999999999999999999998763 34444433221 222232222100 0123
Q ss_pred cccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-cCCCCceEEEeCc
Q psy2835 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLP 215 (305)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~l~~~p 215 (305)
...|+++........... ........+++++++|||||||.||+|++||+++..++......+. +...++++++..|
T Consensus 193 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 270 (573)
T PRK05605 193 TVPWETLVDAAIGGDGSD--VSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALP 270 (573)
T ss_pred ceeHHHHhhccccccccc--cCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecC
Confidence 334555544321110000 0011345789999999999999999999999999887765443332 2145789999999
Q ss_pred hhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH----
Q psy2835 216 LSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY---- 291 (305)
Q Consensus 216 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~---- 291 (305)
++|.+|+...++.++..|+++++.+..+ +..+++.++++++|++.++|.+++.|.+.......++++||.++.++
T Consensus 271 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~ 349 (573)
T PRK05605 271 MFHAYGLTLCLTLAVSIGGELVLLPAPD-IDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALP 349 (573)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCC-HHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCC
Confidence 9999998887888999999999988765 79999999999999999999999999987766666778887665542
Q ss_pred -------HHHhhhHHHhhh
Q psy2835 292 -------AKSTSLQHYMAY 303 (305)
Q Consensus 292 -------a~~~g~~~~~~~ 303 (305)
....|.++++.|
T Consensus 350 ~~~~~~~~~~~~~~i~~~Y 368 (573)
T PRK05605 350 VSTVELWEKLTGGLLVEGY 368 (573)
T ss_pred HHHHHHHHHHhCCCeeccc
Confidence 333566666655
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=272.76 Aligned_cols=291 Identities=18% Similarity=0.199 Sum_probs=232.2
Q ss_pred hhHHHHH-HHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 2 KAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 2 ~~~l~~~-~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
.+++.+. ++.+||..++.+.++.+||+|+.++ ++++|.+|.+.|+++|++|+++++|+.+++++++||+++|++++|+
T Consensus 7 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~-~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQ-VRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred HHHHHHHHhcccCCceEEEeCCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence 5667766 5668998888788899999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
++.++.+++.++++.+++++++++.+. .+.+.+.....+..+.++..+... .....+.++......... ..
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~ 156 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGEL-LPVIKAALGKSPHLEHRVVVGRPE--AGEVQLAELLATESEQFK------PA 156 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhh-HHHHHHHHhcCCCccEEEEeCCCC--cccccHHHHhhcCCCccC------CC
Confidence 999999999999999999999998773 466666666666666666554422 222344444432211110 01
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHH-HHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
...++++++++|||||||.||+|.+||+++...+.. ....+++ +++|+++...|++|.+++...++.++..|+++++.
T Consensus 157 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 235 (508)
T TIGR02262 157 ATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGI-REDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLM 235 (508)
T ss_pred CCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCC-CCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEe
Confidence 345789999999999999999999999999987765 4456677 89999999999999999877788899999999998
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH-----------HHHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA-----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~-----------~~a~~~g~~~~~~~ 303 (305)
+....+..+++.+++++||++.++|.++..++++.........++|.++. .|...+|+++++.|
T Consensus 236 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~Y 310 (508)
T TIGR02262 236 GERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGI 310 (508)
T ss_pred CCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCc
Confidence 76555799999999999999999999998887654333334556664432 24445678888776
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=276.22 Aligned_cols=289 Identities=13% Similarity=0.131 Sum_probs=228.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++++||+|+.++ ++++|..|.+.|+++||+|+++++|+.+++++++||+++|++++++++
T Consensus 27 ~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~ 105 (527)
T TIGR02275 27 DILRDQAARYPDAIAIICGNRQWSYRELDQR-ADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALF 105 (527)
T ss_pred HHHHHHHHHCCCceEEEeCCceecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEecccc
Confidence 5678888999998888888999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHH----HHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQL----EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
..+.++++++++..+++.+++++.... +....+....+..+.++...... .................
T Consensus 106 ~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------ 176 (527)
T TIGR02275 106 SHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTR---VEAELFLWLESPAEPVK------ 176 (527)
T ss_pred ccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCC---CcchhhHHhhCcCcccc------
Confidence 999999999999999999999865211 12222333344444444332211 01111111111110000
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.....++++++++|||||||.||+|++||+++..++......+.+ +.+|++++.+|++|.+++.. .++.++..|++++
T Consensus 177 ~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v 255 (527)
T TIGR02275 177 FPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWL-TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVV 255 (527)
T ss_pred CCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCC-CcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEE
Confidence 113467899999999999999999999999999988887778888 89999999999999998765 5788999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH-----------HHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY-----------AKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~-----------a~~~g~~~~~~~ 303 (305)
+.+... +..+++.++++++|++.++|+++..+.+..+....+++++|.+++++ ....|.++++.|
T Consensus 256 ~~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~Y 331 (527)
T TIGR02275 256 LAPDPS-PTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVF 331 (527)
T ss_pred ECCCCC-HHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeee
Confidence 987665 78999999999999999999999999887766666778887665542 233566666655
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=276.45 Aligned_cols=294 Identities=16% Similarity=0.138 Sum_probs=225.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|...++++|+..++...++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++|+++
T Consensus 14 ~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~-~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~ 92 (540)
T PRK06164 14 SLLDAHARARPDAVALIDEDRPLSRAELRAL-VDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNT 92 (540)
T ss_pred HHHHHHHHhCCCCeEEecCCCcccHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCC
Confidence 6788889999998888788899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhc-cCCCccEEEEccCCCCC-CCc--ccHHHHHHhccCCCCch
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKA-QCPKLKAIVQYEGKPDK-PGV--ISWDELMELGRAAPDES 154 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~-~~~~~~~~i~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~ 154 (305)
..+.+++.++++.++++++++++++. .+.+..... ..+..+.++.++..... +.. ..+..+...........
T Consensus 93 ~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (540)
T PRK06164 93 RYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAA 172 (540)
T ss_pred CCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccccccccCCccc
Confidence 99999999999999999999987631 111222111 12334444444311110 000 00111111000000000
Q ss_pred hHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCc
Q psy2835 155 LDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAA 234 (305)
Q Consensus 155 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 234 (305)
........+++++++|||||||.||+|++||+++..++......+++ .+++++++.+|++|.+|+. .++.++..|+
T Consensus 173 --~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~ 248 (540)
T PRK06164 173 --AGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGY-DPGAVLLAALPFCGVFGFS-TLLGALAGGA 248 (540)
T ss_pred --ccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCC-CCCCEEEEcCCchhHHHHH-HHHHHHhcCc
Confidence 00012346899999999999999999999999999998888888888 8999999999999999985 5899999999
Q ss_pred EEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH-----------HHHHHhhhHHHhhh
Q psy2835 235 TLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA-----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 235 ~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~-----------~~a~~~g~~~~~~~ 303 (305)
++++.+.++ +..+++.++++++|+++++|+++..+.+. .....+++++|.+.+ .|..+.|+++++.|
T Consensus 249 ~~~~~~~~~-~~~~~~~l~~~~~t~~~~~p~~l~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 326 (540)
T PRK06164 249 PLVCEPVFD-AARTARALRRHRVTHTFGNDEMLRRILDT-AGERADFPSARLFGFASFAPALGELAALARARGVPLTGLY 326 (540)
T ss_pred eEEecCCCC-HHHHHHHHHHhCCeeecCCHHHHHHHHHh-hcccCCCcceeeeeeccCCcchHHHHHHHhhcCCceecce
Confidence 999988766 68999999999999999999999999886 334556777775433 23344466666655
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=273.46 Aligned_cols=274 Identities=21% Similarity=0.281 Sum_probs=224.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++.+||+||.++ +.+++++|.+.|+.+||+|+++++|+.+++++++||+.+|++++|+++
T Consensus 4 ~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~-v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 82 (515)
T TIGR03098 4 HLLEDAAARLPDATALVHHDRTLTYAALSER-VLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82 (515)
T ss_pred HHHHHHHHHCCCCeEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCC
Confidence 5788899999998888788889999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC----CCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----PGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
..+.+++..+++..++++++++.+. .+.+......++....++.+++.... .....|+++....... .
T Consensus 83 ~~~~~~~~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 154 (515)
T TIGR03098 83 LLKAEQVAHILADCNVRLLVTSSER-LDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDAD-------P 154 (515)
T ss_pred CCCHHHHHHHHHcCCCeEEEEccch-hhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccccc-------c
Confidence 9999999999999999999998763 45555555555555566655543211 1223455554322211 0
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
......+++++++|||||||.||+|.+||+++...+......+++ ..+|++++.+|++|.+|+.. ++.++..|+++++
T Consensus 155 ~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~ 232 (515)
T TIGR03098 155 PHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLEN-RPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVL 232 (515)
T ss_pred cCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCC-CcccEEEEECchhhHhHHHH-HHHHHHcCCEEEE
Confidence 112356889999999999999999999999999988888788888 89999999999999999865 8999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
.+... +..+++.++++++|++.++|+++..|.+.. ....+++++|.++.
T Consensus 233 ~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~l~~~~~ 281 (515)
T TIGR03098 233 HDYLL-PRDVLKALEKHGITGLAAVPPLWAQLAQLD-WPESAAPSLRYLTN 281 (515)
T ss_pred cCCCC-HHHHHHHHHHcCCceEecChHHHHHHHhcc-cCCCCccceEEEEe
Confidence 87765 799999999999999999999999987642 12234566665544
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=276.94 Aligned_cols=292 Identities=16% Similarity=0.272 Sum_probs=230.2
Q ss_pred hhHHHHHHHhcccceeeecc---CCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 2 KAFLKLGLERYHSVCIIGFN---APEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~---~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
.++|+..+..+|+..++.++ ++.+||+|+.++ +.++|.+|.+ .|+++||+|+++++|+.+++++++||+++|+++
T Consensus 13 ~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~-~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~ 91 (576)
T PRK05620 13 TRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGAR-AAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVF 91 (576)
T ss_pred HHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEE
Confidence 36889999999998777653 368999999996 9999999986 799999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---------CCCcccHHHHHHhcc
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---------KPGVISWDELMELGR 148 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~l~~~~~ 148 (305)
++++|..+.+++.++++..+++++++++.. .+.+.+....++..+.++..+.... .....+|+++.....
T Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (576)
T PRK05620 92 NPLNKQLMNDQIVHIINHAEDEVIVADPRL-AEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRS 170 (576)
T ss_pred eecccccCHHHHHHHHhccCCcEEEEChhh-HHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcCC
Confidence 999999999999999999999999998774 4666666666666666655442211 122345777765332
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHH--HHhhccCCCCceEEEeCchhHHHHHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDI 226 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~~~~g~~~~~ 226 (305)
..... ....++++++++|||||||.||+|.+||+++....... ...+++ ..++++++.+|++|.+|... .
T Consensus 171 ~~~~~------~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~-~ 242 (576)
T PRK05620 171 TVYDW------PELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAV-THGESFLCCVPIYHVLSWGV-P 242 (576)
T ss_pred CcCCC------CCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCC-CCCCeEEEeCChHHhhhhHH-H
Confidence 11111 13467899999999999999999999999987654432 334667 88999999999999998765 7
Q ss_pred HHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHh
Q psy2835 227 YSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKST 295 (305)
Q Consensus 227 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~ 295 (305)
+.++..|+++++.+....+..+++.++++++|++.++|+++..++.+......+..++|.++++ +...+
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~ 322 (576)
T PRK05620 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY 322 (576)
T ss_pred HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh
Confidence 8889999999998755558999999999999999999999999887654443444566644433 34446
Q ss_pred hhHHHhhh
Q psy2835 296 SLQHYMAY 303 (305)
Q Consensus 296 g~~~~~~~ 303 (305)
|+++++.|
T Consensus 323 ~~~~~~~Y 330 (576)
T PRK05620 323 GVDVVHVW 330 (576)
T ss_pred CCceeeec
Confidence 77777665
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=273.30 Aligned_cols=277 Identities=22% Similarity=0.252 Sum_probs=225.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|.+.++++|+..++.+.++.+||+||.++ +.++|..|.+.|+++||+|+++++|+.+++++++||+++|++++|+++
T Consensus 15 ~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~ 93 (523)
T PRK08316 15 DILRRSARRYPDKTALVFGDRSWTYAELDAA-VNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNF 93 (523)
T ss_pred HHHHHHHHHCCCCeEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEeccc
Confidence 6788889999998888888999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCC---CCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK---PDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
..+.+++.++++..++++++++.+. ...+.+........ .+...... ........++++..........
T Consensus 94 ~~~~~~i~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 165 (523)
T PRK08316 94 MLTGEELAYILDHSGARAFLVDPAL-APTAEAALALLPVD-TLILSLVLGGREAPGGWLDFADWAEAGSVAEPD------ 165 (523)
T ss_pred ccCHHHHHHHHHhCCCCEEEEccch-HHHHHHHhhhcCcc-ceeeeecccccccccchhhHHHHHhcCCCccCc------
Confidence 9999999999999999999999874 34554443332211 11111110 0112334455444332211111
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.....+++++++|||||||.||+|.+||+++..........+++ ..+|++++.+|++|..|+...++.++..|+++++.
T Consensus 166 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~ 244 (523)
T PRK08316 166 VELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDM-SADDIPLHALPLYHCAQLDVFLGPYLYVGATNVIL 244 (523)
T ss_pred cCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCC-CCCceEEEccCCchhhhHHHHHHHHHhcCceEEEe
Confidence 23467899999999999999999999999999988877778888 99999999999999999877677789999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+... +..+++.++++++|++.++|.++..+.++......+++++|.++++
T Consensus 245 ~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~g 294 (523)
T PRK08316 245 DAPD-PELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYG 294 (523)
T ss_pred cCCC-HHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEc
Confidence 7765 7999999999999999999999999988766666678888866554
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=274.32 Aligned_cols=285 Identities=19% Similarity=0.272 Sum_probs=224.5
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+ .++.+||+||.++ ++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++++
T Consensus 22 ~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l 100 (558)
T PRK12583 22 DAFDATVARFPDREALVVRHQALRYTWRQLADA-VDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNI 100 (558)
T ss_pred HHHHHHHHHCCCCeEEEecCCCcEecHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEec
Confidence 578888999999777755 4578999999995 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhc-------------cCCCccEEEEccCCCCCCCcccHHHH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKA-------------QCPKLKAIVQYEGKPDKPGVISWDEL 143 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~l 143 (305)
++..+.+++.+++++.+++++++++... ...+.+... ..+....++.+... ...+...|+++
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 179 (558)
T PRK12583 101 NPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA-PPPGFLAWHEL 179 (558)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC-CCccccchHhh
Confidence 9999999999999999999999976421 111222111 12233344433322 12334456555
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
....................++++++++|||||||.||+|.+||.++..++......+++ .++|++++..|++|.+|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~ 258 (558)
T PRK12583 180 QARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGL-TEHDRLCVPVPLYHCFGMV 258 (558)
T ss_pred hhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCC-CCCCeEEEecCchhhhhHH
Confidence 443322111111111123457889999999999999999999999999988888888888 8999999999999999999
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..++.++..|+++++......+..+++.++++++|++.++|+++..++++......+++++|.++++
T Consensus 259 ~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~ 325 (558)
T PRK12583 259 LANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMA 325 (558)
T ss_pred HHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEec
Confidence 9899999999999987655557899999999999999999999998887665555678888876554
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=286.10 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=215.9
Q ss_pred hHHHHHHHhccc-ceeeecc-CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHS-VCIIGFN-APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~-~~~~~~~-~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++...++++|+ ..++.+. .+.+||+|+.++ ++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+
T Consensus 208 ~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~-~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl 285 (718)
T PRK08043 208 EALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKK-TLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRIPAMM 285 (718)
T ss_pred HHHHHHHHHhCCCCcceEcCCCCcccHHHHHHH-HHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCccccc
Confidence 567888889987 5666553 478999999996 99999999987 5999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHH--HHHhccCCCccEEEEccCCCCCCCcccHHHHH--HhccCCCCchhH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKI--LKVKAQCPKLKAIVQYEGKPDKPGVISWDELM--ELGRAAPDESLD 156 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 156 (305)
++.++.+++.++++++++++++++.+. .+.. ......++....+ .+++.. ....+.+.. ......+..
T Consensus 286 ~~~~~~~~l~~~l~~s~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~i-~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 357 (718)
T PRK08043 286 NYTAGVKGLTSAITAAEIKTIFTSRQF-LDKGKLWHLPEQLTQVRWV-YLEDLK---DDVTTADKLWIFAHLLMPRL--- 357 (718)
T ss_pred ccCcCHHHHHHHHHHcCCcEEEEcHHH-HhhccCCChhhhhccccEE-Ehhhhh---hhcchhHHHHHHHHHhCCcc---
Confidence 999999999999999999999998663 2211 0111112222222 222211 011111100 000000000
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
......++++++++|||||||.||||++||+++...+......+++ +++|++++.+|++|.+|+...++.++..|+++
T Consensus 358 -~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~v 435 (718)
T PRK08043 358 -AQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADF-TPNDRFMSALPLFHSFGLTVGLFTPLLTGAEV 435 (718)
T ss_pred -ccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCC-CccCeEEEcCcchhhhhhHHHHHHHHHcCCEE
Confidence 0012356899999999999999999999999999988887777788 89999999999999999888889999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
++.+....+..+++.++++++|++.++|+++..+.+.. ...++++||.++++ +...+|+++++.|
T Consensus 436 v~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~Y 511 (718)
T PRK08043 436 FLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGY 511 (718)
T ss_pred EEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHcCCCeeccc
Confidence 99876444577889999999999999999998876532 23456777765543 3334677777766
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=270.40 Aligned_cols=292 Identities=16% Similarity=0.222 Sum_probs=223.3
Q ss_pred hHHHHHHHhcccceeeeccC-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIGFNA-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++++..++++|++.++.+.+ +.+||+||.++ ++++|..|.++|+++||+|+++++|+.+++++++||+++|+++
T Consensus 11 ~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~-v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~ 89 (517)
T PRK08008 11 QMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEE-INRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIM 89 (517)
T ss_pred HHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence 67888999999988876643 68999999995 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhcc-CCCccEEEEccCCC-CCCCcccHHHHHHhccCCCCchh
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQ-CPKLKAIVQYEGKP-DKPGVISWDELMELGRAAPDESL 155 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 155 (305)
+++++..+.+++.+++++.+++.++++.+. ...+.++... ....+.++..+... .......++++..........
T Consensus 90 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 166 (517)
T PRK08008 90 VPINARLLREESAWILQNSQASLLVTSAQF-YPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLCY-- 166 (517)
T ss_pred EEcCcccCHHHHHHHHHhcCceEEEEecch-hHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCccccc--
Confidence 999999999999999999999999999874 4555554332 23344455443321 112334455544322111110
Q ss_pred HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
.....++++++|+|||||||.||+|.+||.++............+ ..++++++.+|++|..+....++.++..|++
T Consensus 167 ---~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~ 242 (517)
T PRK08008 167 ---APPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCAL-RDDDVYLTVMPAFHIDCQCTAAMAAFSAGAT 242 (517)
T ss_pred ---cCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCC-CCCCeEEEecCcHHHHHHHHHHHHHHhcCcE
Confidence 113456899999999999999999999999998654433333456 7899999999999998888888999999999
Q ss_pred EEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHH----------HHHHHHhhhHHHhhh
Q psy2835 236 LWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI----------ANYAKSTSLQHYMAY 303 (305)
Q Consensus 236 ~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~----------~~~a~~~g~~~~~~~ 303 (305)
+++.+... +..+++.++++++|++.++|++++.+............+++.++ -.+.+..|+++++.|
T Consensus 243 ~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (517)
T PRK08008 243 FVLLEKYS-ARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGVRLLTSY 319 (517)
T ss_pred EEEccccC-HHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEecCCCHHHHHHHHHHhCCeEEeec
Confidence 99998766 78999999999999999999999988764332222233444332 223444566666655
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=253.10 Aligned_cols=281 Identities=13% Similarity=0.094 Sum_probs=241.8
Q ss_pred hhHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
.++|...++++||+.++.+.++.+||+||.++ ++++|..|+++|+++||+|.+.++|..+|++++||++++|+.+|.--
T Consensus 31 ~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr-~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlAL 109 (542)
T COG1021 31 TDILTDHAARYPDRIAVIDGERRLSYAELDQR-ADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLAL 109 (542)
T ss_pred HHHHHHHHhhcCCceEEecCcccccHHHHHHH-HHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhcc
Confidence 47899999999999999899999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHH
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
|+-...|+....+.+.++.+|.+... ....+.++....+.++++++.++... ....+..+..........
T Consensus 110 psHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~--~~~~~~~~~~~a~~~~~a---- 183 (542)
T COG1021 110 PSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEH--PSVLEAALCHPAGLFTPA---- 183 (542)
T ss_pred chhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCC--cchhhhhhhCccccCCcC----
Confidence 99999999999999999999997632 34666778888999999997754321 111122222222211111
Q ss_pred hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEE
Q psy2835 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATL 236 (305)
Q Consensus 158 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~ 236 (305)
.+..++++++...+.||||+||.+..||.....++....+..++ +..+++||.+|..|-+.+.+ +++..++.|+++
T Consensus 184 --~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~-~~~tvyL~~LP~AHNfplssPG~LGv~~agG~V 260 (542)
T COG1021 184 --PPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGF-DQQTVYLCALPAAHNFPLSSPGALGVFLAGGTV 260 (542)
T ss_pred --CCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCc-CccceEEEecccccCCCCCCcchhheeeeccEE
Confidence 24567889999999999999999999999999999999999999 99999999999999887654 688999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAK 293 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~ 293 (305)
|+.+... |+..+..|++++||++.++|.+...|+.+.+....+++|||.+=.++|+
T Consensus 261 Vla~~ps-p~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGar 316 (542)
T COG1021 261 VLAPDPS-PELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGAR 316 (542)
T ss_pred EECCCCC-HHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcc
Confidence 9998887 7999999999999999999999999999999999999999977666543
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=272.69 Aligned_cols=274 Identities=18% Similarity=0.261 Sum_probs=217.7
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++...+++.|+..++.+. ++++||+||.++ ++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++|+
T Consensus 27 ~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~-~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l 105 (537)
T PLN02246 27 DYCFERLSEFSDRPCLIDGATGRVYTYADVELL-SRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTA 105 (537)
T ss_pred HHHHHHHHhCCCCeEEEecCCCceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecC
Confidence 4667777788887776553 478999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
++..+.+++..+++..++++++++... .+.+.+.... +. ..++.++... .....+.++......... ..
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~-~~-~~~i~~~~~~--~~~~~~~~~~~~~~~~~~------~~ 174 (537)
T PLN02246 106 NPFYTPAEIAKQAKASGAKLIITQSCY-VDKLKGLAED-DG-VTVVTIDDPP--EGCLHFSELTQADENELP------EV 174 (537)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEccch-HHHHHHHhhc-CC-ceEEEeCCCC--CCceeHHHHhcCCCCCCC------CC
Confidence 999999999999999999999998763 3444444321 12 2344344321 223445554432111110 11
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
...++++++++|||||||.||+|++||+++......... .+++ ..+|++++..|++|.+++...++.++..|+++
T Consensus 175 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 253 (537)
T PLN02246 175 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYSLNSVLLCGLRVGAAI 253 (537)
T ss_pred CCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCC-CCCcEEEEeechHHHHHHHHHHHHHHhcCCEE
Confidence 345789999999999999999999999999987765433 4567 88999999999999999877788899999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++.+... +..+++.++++++|++.++|+++..|.+.......+++++|.++.+
T Consensus 254 ~~~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~g 306 (537)
T PLN02246 254 LIMPKFE-IGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSG 306 (537)
T ss_pred EEeCCCC-HHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEe
Confidence 9998765 6899999999999999999999999987665555567777766543
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=279.72 Aligned_cols=282 Identities=12% Similarity=0.099 Sum_probs=212.7
Q ss_pred hhHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 2 KAFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
..++++.++..|+..++.+ ..+.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDE-VNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 3567777777888777654 2357999999996 99999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccC-CCccEEEEccCCCCC-----CCcccHH
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQC-PKLKAIVQYEGKPDK-----PGVISWD 141 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~-~~~~~~i~~~~~~~~-----~~~~~~~ 141 (305)
+++|+++.++.+++.+++++++++++|+++.. ..+.+.++.... +....++.++..... .....++
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 214 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYA 214 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHH
Confidence 99999999999999999999999999997531 112333332222 233445544432110 1223455
Q ss_pred HHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHH-HHHHhhccCCCCceEEEeCchhHHH
Q psy2835 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-CIIQYFKLESAALSVISFLPLSHIA 220 (305)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~l~~~pl~~~~ 220 (305)
++.......... .....++++++|+|||||||.||||+++|.++..... .....+++ .++|++++..|++|..
T Consensus 215 ~~~~~~~~~~~~-----~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~ 288 (629)
T PRK10524 215 TLRAQHLGARVP-----VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGG-KAGETFFCASDIGWVV 288 (629)
T ss_pred HHHhcCCCCCCC-----ceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCC-CCCCEEEEcCCCCeec
Confidence 554332111110 0123578999999999999999999999999865443 34445677 8899999999999998
Q ss_pred HHHHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHHH
Q psy2835 221 AQTVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIAN 290 (305)
Q Consensus 221 g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~~ 290 (305)
|..+.++.++..|+++++.+. ..++..+++.++++++|++.++|++++.|.+... ....++++||.++.+
T Consensus 289 ~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~ 363 (629)
T PRK10524 289 GHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLA 363 (629)
T ss_pred cchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEe
Confidence 877778999999999998864 2236889999999999999999999999876532 133467777765543
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=271.81 Aligned_cols=293 Identities=17% Similarity=0.185 Sum_probs=221.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+++++.++++|+..++...++.+||+||.++ ++++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++|++
T Consensus 28 ~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~-~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~ 106 (562)
T PRK05677 28 AVLKQSCQRFADKPAFSNLGKTLTYGELYKL-SGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTN 106 (562)
T ss_pred HHHHHHHHhCCCCeeEEECCceeeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecC
Confidence 5678888889998888788889999999996 9999999997 6999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC------------------------CCCc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD------------------------KPGV 137 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------~~~~ 137 (305)
|..+.+++.++++++++++++++... ...+.++.... ..+.++..+.... .+..
T Consensus 107 ~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (562)
T PRK05677 107 PLYTAREMEHQFNDSGAKALVCLANM-AHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQA 184 (562)
T ss_pred CCCCHHHHHHHHhccCceEEEEecch-hhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhhccccccccCCccc
Confidence 99999999999999999999998763 34444333222 2333332211000 0111
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC-C-CCceEEEeCc
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-S-AALSVISFLP 215 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~-~~~~~l~~~p 215 (305)
..+.+........... .....++++++|+|||||||.||+|+++|+++..+.......+... . ..+.+++.+|
T Consensus 185 ~~~~~~~~~~~~~~~~-----~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 259 (562)
T PRK05677 185 VKFNDALAKGAGQPVT-----EANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLP 259 (562)
T ss_pred ccHHHHHhcCCCCCCC-----CCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCc
Confidence 2233333222111100 1134568999999999999999999999999988776655544320 3 3478899999
Q ss_pred hhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----
Q psy2835 216 LSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----- 290 (305)
Q Consensus 216 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----- 290 (305)
++|.+|+...++..+..|++.++.+....+..+++.++++++|+++++|+++..+.+.......+++++|.++.+
T Consensus 260 l~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~ 339 (562)
T PRK05677 260 LYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQ 339 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCC
Confidence 999999887788888999988877655557899999999999999999999999887544444456777766554
Q ss_pred ------HHHHhhhHHHhhh
Q psy2835 291 ------YAKSTSLQHYMAY 303 (305)
Q Consensus 291 ------~a~~~g~~~~~~~ 303 (305)
|....|+++++.|
T Consensus 340 ~~~~~~~~~~~~~~v~~~Y 358 (562)
T PRK05677 340 LATAERWKEVTGCAICEGY 358 (562)
T ss_pred HHHHHHHHHHcCCCeeccC
Confidence 3344577777766
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=270.00 Aligned_cols=288 Identities=17% Similarity=0.211 Sum_probs=224.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++.+||+|+.++ +.++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++
T Consensus 11 ~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~ 89 (528)
T PRK07470 11 HFLRQAARRFPDRIALVWGDRSWTWREIDAR-VDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNF 89 (528)
T ss_pred HHHHHHHHHCCCceEEEECCccccHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCc
Confidence 5788889999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++..+++.+++++.. .+..............++.++... ...+++++.......... ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~ 160 (528)
T PRK07470 90 RQTPDEVAYLAEASGARAMICHADF-PEHAAAVRAASPDLTHVVAIGGAR---AGLDYEALVARHLGARVA-----NAAV 160 (528)
T ss_pred cCCHHHHHHHHHhcCceEEEEcchh-HHHHHHHHhhCCcCceEEEeCCCc---ccccHHHHHhcCCCCCCC-----cccC
Confidence 9999999999999999999999874 344444444445555556554432 234566665432111111 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh--ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
.++++++|+|||||||.||+|++||+++...+....... ++ ...|+++..+|++|.+++.. ++ .+..|++.++.+
T Consensus 161 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~ 237 (528)
T PRK07470 161 DHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGT-TEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLP 237 (528)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCC-CcccEEEEeccchhHHHHHH-HH-HHhcCceEEEec
Confidence 668999999999999999999999999976554432222 45 77899999999999988754 44 567777777665
Q ss_pred -CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH-----------HHHhhhHHHhhh
Q psy2835 241 -KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY-----------AKSTSLQHYMAY 303 (305)
Q Consensus 241 -~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~-----------a~~~g~~~~~~~ 303 (305)
....+..+++.++++++|++.++|++++.+.+.+.....+++++|.+++++ ....|.++++.|
T Consensus 238 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~Y 312 (528)
T PRK07470 238 SERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYF 312 (528)
T ss_pred ccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhC
Confidence 333478999999999999999999999999887655556777887665432 233566777665
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=268.55 Aligned_cols=274 Identities=19% Similarity=0.217 Sum_probs=223.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++.+.++++|+..++.+.++.+||+||.++ +++++..|.+.|+++|++|+++++|+++++++++||++.|++++|++|
T Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 94 (524)
T PRK06188 16 HLLVSALKRYPDRPALVLGDTRLTYGQLADR-ISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHP 94 (524)
T ss_pred HHHHHHHHHCCCCeEEEECCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEeccc
Confidence 5778888999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++.++++.+++++......+.+.....+...+++.+.... . ..++.......+..... ...
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~---~~~ 165 (524)
T PRK06188 95 LGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP---D---GVDLLAAAAKFGPAPLV---AAA 165 (524)
T ss_pred CCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCcc---c---hhhHHHhhhccCccccc---ccC
Confidence 99999999999999999999987643445555555555555555444321 0 11222111111111100 122
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||+|.+||.++...+......+++ ..+|++++..|++|.+|+. ++.++..|+++++.+..
T Consensus 166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~~~ 242 (524)
T PRK06188 166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEW-PADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKF 242 (524)
T ss_pred CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCC-CcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcCCC
Confidence 45669999999999999999999999999999888888888 8999999999999988863 67889999999999876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
. +..+++.++++++|++.++|+++..+++.......+++++|.++++
T Consensus 243 ~-~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~g 289 (524)
T PRK06188 243 D-PAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYG 289 (524)
T ss_pred C-HHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEc
Confidence 6 7999999999999999999999999998766666677888765443
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=270.83 Aligned_cols=270 Identities=16% Similarity=0.221 Sum_probs=208.3
Q ss_pred hHHHHHHHhcccceeeeccCC----------ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHH
Q psy2835 3 AFLKLGLERYHSVCIIGFNAP----------EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIY 72 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~----------~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~ 72 (305)
+++.+.++++|+..++.+.+. .+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus 10 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~-~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~ 88 (552)
T PRK09274 10 RHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDAR-SDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFK 88 (552)
T ss_pred HHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHH
Confidence 467778888999777766443 8999999996 99999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHH-HHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 73 AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 73 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
+|++++|++|.++.+++.++++++++++++++.+... ..+... .......++.++... ..+...++++........
T Consensus 89 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 165 (552)
T PRK09274 89 AGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL-LWGGTTLATLLRDGAAAP 165 (552)
T ss_pred cCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc-ccCCccHHHhcccCcccc
Confidence 9999999999999999999999999999999753211 111111 112233333332210 112223444432111111
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 231 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~ 231 (305)
. ......++++++|+|||||||.||+|++||+++..++......+++ .++|+.++.+|++|.+++ .
T Consensus 166 ~-----~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~pl~~~~~~--------~ 231 (552)
T PRK09274 166 F-----PMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGI-EPGEIDLPTFPLFALFGP--------A 231 (552)
T ss_pred C-----CCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCC-CCCceeeeccCHHHhhhh--------h
Confidence 0 0113456899999999999999999999999999998888888888 899999999999886543 3
Q ss_pred hCcEEEEeCC------ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 232 VAATLWFADK------NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 232 ~G~~~v~~~~------~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.|+++++.+. ..++..+++.++++++|+++++|+++..|.+.......++++||.++++
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 296 (552)
T PRK09274 232 LGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISA 296 (552)
T ss_pred hCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEec
Confidence 5888887652 2236899999999999999999999999998876667789999977665
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=273.21 Aligned_cols=266 Identities=15% Similarity=0.233 Sum_probs=204.7
Q ss_pred Hhcccceeeecc--CCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCH
Q psy2835 10 ERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86 (305)
Q Consensus 10 ~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~ 86 (305)
+++|+..++.+. +.++||+||.++ ++++|+.|.+ .|+++||+|+++++|+.++++++|||+++|++++|++|..+.
T Consensus 50 ~~~~~~~a~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~ 128 (560)
T PLN02574 50 HNHNGDTALIDSSTGFSISYSELQPL-VKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSL 128 (560)
T ss_pred cccCCCCEEEECCCCCcccHHHHHHH-HHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCH
Confidence 456676555553 347999999996 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC----CCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP----DKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 87 ~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
+++.++++++++++++++.+. .+.+... ... ++.+.... .......++++.......... ...
T Consensus 129 ~~l~~~l~~~~~~~~~~~~~~-~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 195 (560)
T PLN02574 129 GEIKKRVVDCSVGLAFTSPEN-VEKLSPL-----GVP-VIGVPENYDFDSKRIEFPKFYELIKEDFDFVPK------PVI 195 (560)
T ss_pred HHHHHHHHhcCCEEEEECHHH-HHHHHhc-----CCc-EEecCcccccccCccCcccHHHHhhcCCccccc------CCC
Confidence 999999999999999998763 3333221 111 22121110 012234455554432211111 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++++++++|||||||.||||++||+++..++..... .......++++++.+|++|.+|+...++.++..|+++++
T Consensus 196 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~ 275 (560)
T PLN02574 196 KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVV 275 (560)
T ss_pred CcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEE
Confidence 5689999999999999999999999999987765543 122213568899999999999988777888889999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH-hhcccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA-VGKQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~~sl~~~~~~ 290 (305)
.+.++ +..+++.+++|++|++.++|+++..|.+.... ...+++++|.++++
T Consensus 276 ~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~g 327 (560)
T PLN02574 276 MRRFD-ASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCG 327 (560)
T ss_pred ecCCC-HHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEe
Confidence 98765 79999999999999999999999999886543 34567888876554
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=267.13 Aligned_cols=270 Identities=18% Similarity=0.212 Sum_probs=217.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|++.+.+.||..++.+.++.+||+|+.++ ++++|++|.+.|+++||+|+++++|+.+++++++|++++|++++|+++
T Consensus 6 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~ 84 (483)
T PRK03640 6 NWLKQRAFLTPDRTAIEFEEKKVTFMELHEA-VVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNT 84 (483)
T ss_pred HHHHHHHHhCCCceEEEeCCeeeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCc
Confidence 5788899999999888888999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++.++++.+++++... ....... ...++++.......... ....
T Consensus 85 ~~~~~~~~~~~~~~~~~~vi~~~~~~-~~~~~~~--------------------~~~~~~~~~~~~~~~~~-----~~~~ 138 (483)
T PRK03640 85 RLSREELLWQLDDAEVKCLITDDDFE-AKLIPGI--------------------SVKFAELMNGPKEEAEI-----QEEF 138 (483)
T ss_pred CCCHHHHHHHHHhCCCCEEEEcchhh-HHHhhhc--------------------cccHHHHhhcccccCCC-----CCCC
Confidence 99999999999999999999987632 2221110 00133333221111000 0123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||+|.+||.++...+......+++ +.+|++++.+|++|++|+.. ++.++..|+++++.+..
T Consensus 139 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~ 216 (483)
T PRK03640 139 DLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGL-TEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKF 216 (483)
T ss_pred CCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCC-CcCcEEEEecCHHHHHHHHH-HHHHHhcCCEEEecCCC
Confidence 56899999999999999999999999998887777777888 99999999999999999865 78999999999999876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH----------HHHHHhhhHHHhhh
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~----------~~a~~~g~~~~~~~ 303 (305)
. +..+++.++++++|++.++|+++..|.+..... ...+++|.+++ .+.++.|+++++.|
T Consensus 217 ~-~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~Y 285 (483)
T PRK03640 217 D-AEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSY 285 (483)
T ss_pred C-HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeee
Confidence 5 799999999999999999999999998643322 22345554433 23444577777665
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=274.32 Aligned_cols=259 Identities=15% Similarity=0.120 Sum_probs=199.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
+++||+||.++ +.++|+.|+++|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++|+++|
T Consensus 113 ~~~Ty~eL~~~-v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li 191 (652)
T TIGR01217 113 APVTWAELRRQ-VASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLF 191 (652)
T ss_pred eEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 47999999996 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeChH--------HHHHHHHHhccCCCccEEEEccCCCC-------CCCcccHHHHHHhccCCCCchhHHhhhccCCCce
Q psy2835 103 VEDDK--------QLEKILKVKAQCPKLKAIVQYEGKPD-------KPGVISWDELMELGRAAPDESLDRVLETIATNEC 167 (305)
Q Consensus 103 ~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (305)
+++.. ..+.+.++...++.++.++.+..... ..+...|+++.......... ......+++
T Consensus 192 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~ 266 (652)
T TIGR01217 192 TVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELV-----FEQLPFDHP 266 (652)
T ss_pred EccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccCCCCC-----ceecCCCCC
Confidence 97642 13455555566666666665542110 01234566665432111100 012356899
Q ss_pred eEEEeccCCCCCCcceEechhHHHH-HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC---cc
Q psy2835 168 CTLVYTSGTEGASKPVMLSHDNITF-NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK---NA 243 (305)
Q Consensus 168 ~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~---~~ 243 (305)
++|+|||||||.||||+++|.+++. ........+++ .++|++++..|+.|+.+. + ++.++..|+++++.+. ..
T Consensus 267 ~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~-~-~~~~l~~G~t~vl~~g~~~~~ 343 (652)
T TIGR01217 267 LWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDL-GPGDRLFYYTTTGWMMWN-W-LVSGLATGATLVLYDGSPGFP 343 (652)
T ss_pred EEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCC-CCCcEEEEeCCcchhhhH-H-HHHHHhcCcEEEEECCCCCCC
Confidence 9999999999999999999998764 34444555778 899999999999997542 3 5689999999999863 22
Q ss_pred chhHHHHHhhhcCCcEEEechHHHHHHHHHH--HHhhcccChHHHHHHH
Q psy2835 244 LKGSLINTLLEVRPHVFLAVPRVWEKIHEKL--MAVGKQTTGVKRWIAN 290 (305)
Q Consensus 244 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--~~~~~~~~sl~~~~~~ 290 (305)
++..+++.++++++|++..+|.++..+.+.. .....++++||.++.+
T Consensus 344 ~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~g 392 (652)
T TIGR01217 344 ATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVAST 392 (652)
T ss_pred CchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEee
Confidence 3678999999999999988887777665421 1234578899877654
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=276.61 Aligned_cols=271 Identities=18% Similarity=0.182 Sum_probs=209.0
Q ss_pred hcccceeeeccC-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCC
Q psy2835 11 RYHSVCIIGFNA-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 85 (305)
Q Consensus 11 ~~~~~~~~~~~~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~ 85 (305)
++|+..++.+.+ +++||+||.++ +.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++
T Consensus 96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~ 174 (655)
T PRK03584 96 RRDDRPAIIFRGEDGPRRELSWAELRRQ-VAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFG 174 (655)
T ss_pred CCCCCeEEEEECCCCceEEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCC
Confidence 367766665532 57999999996 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccCCCccEEEEccCCC------CCCCcccHHHHHHhccCCC
Q psy2835 86 PEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQCPKLKAIVQYEGKP------DKPGVISWDELMELGRAAP 151 (305)
Q Consensus 86 ~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~l~~~~~~~~ 151 (305)
.+++.+++++++++++++++.. ..+.+.++...++..+.++.+.... .......|+++........
T Consensus 175 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (655)
T PRK03584 175 VQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEAAE 254 (655)
T ss_pred HHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhccccCC
Confidence 9999999999999999997642 1234444555566666666554321 1123455666654211111
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHH-HHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.. ......+++++|+|||||||.||||++||.+++.+ .......+++ .++|++++..++.|+.+. .++.++
T Consensus 255 ~~-----~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~--~~~~~L 326 (655)
T PRK03584 255 LE-----FEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDL-GPGDRFFWYTTCGWMMWN--WLVSGL 326 (655)
T ss_pred CC-----ceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCC-CCCCEEEEcCCchHHhHH--HHHHHH
Confidence 10 12346789999999999999999999999987654 4455566778 899999999999987543 367899
Q ss_pred HhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHHH
Q psy2835 231 TVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~~ 290 (305)
..|+++++.+. ..++..+++.++++++|++..+|++++.+.+... ....++++||.++.+
T Consensus 327 ~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~ 391 (655)
T PRK03584 327 LVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGST 391 (655)
T ss_pred HcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEe
Confidence 99999999863 2347899999999999999999999999876421 233567888866544
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=267.77 Aligned_cols=272 Identities=19% Similarity=0.239 Sum_probs=211.3
Q ss_pred cccceeeeccCCccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHH
Q psy2835 12 YHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 90 (305)
Q Consensus 12 ~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~ 90 (305)
.|+..++.+.++.+||+||.++ ++++|..|.+.|+ .+||+|+++++|+++++++++||+++|++++|++|..+.+++.
T Consensus 14 ~p~~~Al~~~~~~lTy~el~~~-~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~ 92 (540)
T PRK13388 14 GDDTIAVRYGDRTWTWREVLAE-AAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALA 92 (540)
T ss_pred cCCceEEEECCceeeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHH
Confidence 5777777778889999999996 9999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEE
Q psy2835 91 HCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTL 170 (305)
Q Consensus 91 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (305)
++++..++++++++.+. .+.+.++. .+..+ ++.++.. .+.++.......... ....+++++++
T Consensus 93 ~~l~~~~~~~~i~~~~~-~~~~~~~~--~~~~~-~i~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~a~i 155 (540)
T PRK13388 93 ADIRRADCQLLVTDAEH-RPLLDGLD--LPGVR-VLDVDTP-------AYAELVAAAGALTPH------REVDAMDPFML 155 (540)
T ss_pred HHHHhcCCCEEEEChhh-hHHHHhhc--ccCce-EEEccch-------hhhhhhccccCcCCC------CCCCCCCeEEE
Confidence 99999999999998763 33333321 22223 2323221 233333211111110 12467999999
Q ss_pred EeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHH
Q psy2835 171 VYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLIN 250 (305)
Q Consensus 171 ~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 250 (305)
+|||||||.||||+++|+++..........+++ ..+|+++..+|++|.+|+...++.++..|+++++.+.+. +..+++
T Consensus 156 ~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~-~~~~~~ 233 (540)
T PRK13388 156 IFTSGTTGAPKAVRCSHGRLAFAGRALTERFGL-TRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFS-ASGFLD 233 (540)
T ss_pred EECCCCCCCCCEEEecHHHHHHHHHHHHHHhCC-CCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCC-HHHHHH
Confidence 999999999999999999999888887888888 999999999999999998776777899999999887665 689999
Q ss_pred HhhhcCCcEEEechHHHHHHHHHHHHhhcccChHH---------HHHHHHHHHhhhHHHhhh
Q psy2835 251 TLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVK---------RWIANYAKSTSLQHYMAY 303 (305)
Q Consensus 251 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~---------~~~~~~a~~~g~~~~~~~ 303 (305)
.++++++|++..+|..+..+++.+.......++++ .....+.+..|.++++.|
T Consensus 234 ~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~~~l~~~Y 295 (540)
T PRK13388 234 DVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASPRDIAEFSRRFGCQVEDGY 295 (540)
T ss_pred HHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEEECCCCCHHHHHHHHHHhCCceeccc
Confidence 99999999999999999988764322111112222 222334445677777766
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=270.03 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=225.0
Q ss_pred hHHHHHHHhcccceeeec--c--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIGF--N--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
+++++.++++|++.++.. . .+++||+||.++ ++++|++|.+.|+++||+|+++++|+.+++++++||+++|++++
T Consensus 14 ~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~-v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v 92 (542)
T PRK06018 14 RIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDR-ALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICH 92 (542)
T ss_pred HHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEee
Confidence 678899999999877753 2 267999999995 99999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC-----CCcccHHHHHHhccCCCCc
Q psy2835 79 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK-----PGVISWDELMELGRAAPDE 153 (305)
Q Consensus 79 ~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 153 (305)
|++++++.+++.++++.++++.++++.+. .+.+.++....+..+.++...+.... ++...++++........
T Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (542)
T PRK06018 93 TVNPRLFPEQIAWIINHAEDRVVITDLTF-VPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGDF-- 169 (542)
T ss_pred ccccccCHHHHHHHHhccCCCEEEEcccc-HHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCccc--
Confidence 99999999999999999999999999874 45565555555555555544432111 22334555543321110
Q ss_pred hhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHH--HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHH
Q psy2835 154 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITF--NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 231 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~ 231 (305)
......++++++|+|||||||.||+|++||++.+. ........+++ ..+|+++...|++|.+++.. .+.++.
T Consensus 170 ----~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~h~~~~~~-~~~~~~ 243 (542)
T PRK06018 170 ----AWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGT-SAADTMLPVVPLFHANSWGI-AFSAPS 243 (542)
T ss_pred ----CcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCC-CCCCEEEEecCHHHHhhhHH-HHhhhh
Confidence 01133567899999999999999999999997532 22233445677 88999999999999988765 567889
Q ss_pred hCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHh
Q psy2835 232 VAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYM 301 (305)
Q Consensus 232 ~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~ 301 (305)
.|+++++......+..+++.++++++|++.++|+++..+.+.......+++++|.++.+ +.++.|+++++
T Consensus 244 ~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~ 323 (542)
T PRK06018 244 MGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRH 323 (542)
T ss_pred cCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHhCCCeEe
Confidence 99999987654457899999999999999999999999988765555567777755432 22226666666
Q ss_pred hh
Q psy2835 302 AY 303 (305)
Q Consensus 302 ~~ 303 (305)
.|
T Consensus 324 ~Y 325 (542)
T PRK06018 324 AW 325 (542)
T ss_pred ee
Confidence 55
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=273.52 Aligned_cols=284 Identities=16% Similarity=0.142 Sum_probs=210.3
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+.|.+.++++|+..++.+ +++.+||+||.++ ++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 18 ~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l 96 (540)
T PRK05857 18 DRVFEQARQQPEAIALRRCDGTSALRYRELVAE-VGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMA 96 (540)
T ss_pred HHHHHHHhhCCCcEEEeecCCCceeeHHHHHHH-HHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence 456777888999777654 3457999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
+++++.+++.++++.++++++++++... .....+........ .+.++.... ... ..... ..... ....
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~--~~~~~---~~~~~----~~~~ 164 (540)
T PRK05857 97 DGNLPIAAIERFCQITDPAAALVAPGSK-MASSAVPEALHSIP-VIAVDIAAV-TRE--SEHSL---DAASL----AGNA 164 (540)
T ss_pred CccCCHHHHHHHHHhcCCceEEEeccch-hccccccccccccc-eeEeecccc-ccc--ccccc---ccccc----cccc
Confidence 9999999999999999999999997631 11111111111222 122221110 000 00000 00000 0011
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
...++++++++|||||||.||||++||+++.++...... .+++ ..++++++.+|++|..++.. .+.++..|+++
T Consensus 165 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~ 242 (540)
T PRK05857 165 DQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTW-VVGETTYSPLPATHIGGLWW-ILTCLMHGGLC 242 (540)
T ss_pred CCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccccc-ccCceeeecCCccccchHHH-HHHHhhcceeE
Confidence 346689999999999999999999999999876544322 2345 67889999999999998865 78889999998
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
++.+. . +..+++.+++|+||+++++|+++..|.+.......+++++|.++++ |....|+++++.|
T Consensus 243 v~~~~-~-~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~Y 317 (540)
T PRK05857 243 VTGGE-N-TTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVY 317 (540)
T ss_pred EecCC-C-hhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHHHHhCCeeeccc
Confidence 76543 3 5899999999999999999999999988765555677888765443 3344666666655
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=266.20 Aligned_cols=279 Identities=16% Similarity=0.152 Sum_probs=215.8
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|+..+. ++..++.+.++.+||+||.++ ++++|..|.+. |++++++|+++++|+++++++++||+++|++++|++
T Consensus 9 ~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~-v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 85 (529)
T PRK07867 9 ELLLPLAE--DDDRGLYFEDSFTSWREHIRG-SAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLN 85 (529)
T ss_pred HHHHHhcc--cCCceEEECCcEEeHHHHHHH-HHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEec
Confidence 44555554 565666678889999999997 99999999997 899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+..+.+++.+++++++++++++++.. ...+.++. +... ++..+. ..+.++.......... ...
T Consensus 86 ~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~---~~~~-~~~~~~-------~~~~~~l~~~~~~~~~-----~~~ 148 (529)
T PRK07867 86 PTRRGAALARDIAHADCQLVLTESAH-AELLDGLD---PGVR-VINVDS-------PAWADELAAHRDAEPP-----FRV 148 (529)
T ss_pred CCCChHHHHHHHHhCCCeEEEECHhH-HHHHHhhc---cCce-EEEecc-------ccHHHHhcccCCCCCC-----ccc
Confidence 99999999999999999999999764 34333322 1222 221211 1244444322111110 013
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++++++|+|||||||.||+|++||+++..+.......+++ ..+|++++.+|++|.+++...++.++..|+++++.+.
T Consensus 149 ~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~ 227 (529)
T PRK07867 149 ADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGL-GPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRK 227 (529)
T ss_pred CCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCC-CcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCC
Confidence 467899999999999999999999999999888888888888 8999999999999999988878889999999999876
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH---------HHHHHHHhhhHHHhhh
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW---------IANYAKSTSLQHYMAY 303 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~---------~~~~a~~~g~~~~~~~ 303 (305)
.+ +..+++.++++++|++.++|+.+..+++..+......+++|.+ .-.+.+..|+++++.|
T Consensus 228 ~~-~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~~~gg~~~~~~~~~~~~~~g~~l~~~Y 297 (529)
T PRK07867 228 FS-ASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGDIARFARRFGCVVVDGF 297 (529)
T ss_pred CC-HHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEEEecCCCChHHHHHHHHHhCCcEEEee
Confidence 65 6899999999999999999999998876543222222344321 2234555677777766
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=268.09 Aligned_cols=291 Identities=15% Similarity=0.171 Sum_probs=215.2
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++++.++++|++.++.+. .+.+||+||.++ ++++|++|.+.|+++||+|+++++|+.+++++++||+++|++++++
T Consensus 20 ~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 98 (534)
T PRK05852 20 DLVEVAATRLPEAPALVVTADRIAISYRDLARL-VDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL 98 (534)
T ss_pred HHHHHHHHhCCCCcEEEecCCCCcccHHHHHHH-HHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeec
Confidence 6788889999997776553 347999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC-CCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP-DKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
++.++.+++.+++++++++.++++.... ....... .......+.+.... ...+.... ...... .+.... ..
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~--~~ 170 (534)
T PRK05852 99 DPALPIAEQRVRSQAAGARVVLIDADGP-HDRAEPT--TRWWPLTVNVGGDSGPSGGTLSV-HLDAAT--EPTPAT--ST 170 (534)
T ss_pred CCCCCcHHHHHHHHhCCCCEEEEcCCCc-chhcccc--ccccceeeeeccccccccccccc-cccccc--CCCccc--cc
Confidence 9999999999999999999999986521 1111000 00011111111110 00011000 000000 000000 00
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.....+++++++|||||||.||+|+++|+++...+......+++ ..+|++++..|++|.+|+...++.++..|+++++.
T Consensus 171 ~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 249 (534)
T PRK05852 171 PEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRL-SPRDATVAVMPLYHGHGLIAALLATLASGGAVLLP 249 (534)
T ss_pred cCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCC-CCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeC
Confidence 11235788999999999999999999999999988888888888 89999999999999999988889999999999886
Q ss_pred CC-ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh--hcccChHHHHHH-----------HHHHHhhhHHHhhh
Q psy2835 240 DK-NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV--GKQTTGVKRWIA-----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~~~sl~~~~~-----------~~a~~~g~~~~~~~ 303 (305)
+. ...+..+++.++++++|+++++|+++..|.++.... ..+.+++|.++. .+.+.+|+++++.|
T Consensus 250 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~Y 327 (534)
T PRK05852 250 ARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAF 327 (534)
T ss_pred CCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhcc
Confidence 53 233678999999999999999999999998865432 234556553322 23445777887776
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=289.07 Aligned_cols=296 Identities=19% Similarity=0.195 Sum_probs=227.3
Q ss_pred hHHHHHHHhcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+.+++.++++|+..++.+ .++++||+|+.++ ++++|+.|.+ ++++||+|+++++|+++++++++||+++|++++|++
T Consensus 619 ~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~-~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 696 (1146)
T PRK08633 619 EAWIDTAKRNWSRLAVADSTGGELSYGKALTG-ALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVPVNLN 696 (1146)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHH-HHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeC
Confidence 567778889999777765 4679999999996 9999999987 489999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHH--hccCCCccEEEEccCCCCC-CCcccHHHHHHhccCCCCchhHHh
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKV--KAQCPKLKAIVQYEGKPDK-PGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
+..+.+++.+++++++++++++++.. .+.+.+. ....+....++..++.... .....+.+...... .+.......
T Consensus 697 ~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 774 (1146)
T PRK08633 697 YTASEAALKSAIEQAQIKTVITSRKF-LEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARL-LPARLLKRL 774 (1146)
T ss_pred CCcCHHHHHHHHHHcCCCEEEEcHHH-HHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhcc-CCHHHHHhh
Confidence 99999999999999999999998763 3443321 0112233344444332111 11111222211110 011000000
Q ss_pred -hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 159 -LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 159 -~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
.....++++++++|||||||.||+|.+||+++..+.......+++ .++|++++.+|++|.+|+...++.++..|++++
T Consensus 775 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v 853 (1146)
T PRK08633 775 YGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNL-RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVV 853 (1146)
T ss_pred ccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCC-CCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEE
Confidence 123467999999999999999999999999999998888888888 899999999999999999877899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+...+++.+++.++++++|++.++|++++.+.++......+++++|.++.+ +.+..|+++++.|
T Consensus 854 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~Y 930 (1146)
T PRK08633 854 YHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGY 930 (1146)
T ss_pred EeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeeccc
Confidence 98765557899999999999999999999999988665566678888866554 2334677777665
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=265.88 Aligned_cols=291 Identities=14% Similarity=0.136 Sum_probs=215.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
.++...+..+|+..++.+.++.+||+||.++ ++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 24 ~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~-~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 102 (567)
T PLN02479 24 WFLERAAVVHPTRKSVVHGSVRYTWAQTYQR-CRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNI 102 (567)
T ss_pred HHHHHHHhhCCCceEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEecc
Confidence 4567778889998888788889999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC-------CccEEEEccCCCC---------CCCcccHHHHHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP-------KLKAIVQYEGKPD---------KPGVISWDELMEL 146 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~---------~~~~~~~~~l~~~ 146 (305)
..+.+++.+++++++++++++++.+ .+...++...+. ....++.+..... ..+...++++...
T Consensus 103 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T PLN02479 103 RLNAPTIAFLLEHSKSEVVMVDQEF-FTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLET 181 (567)
T ss_pred ccCHHHHHHHHhhcCceEEEEchhh-hhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHHhc
Confidence 9999999999999999999998764 344333322111 1122333332110 0223345555543
Q ss_pred ccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHH
Q psy2835 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDI 226 (305)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~ 226 (305)
........ .....+++++++|||||||.||+|++||+++..........+++ +.++++++..|++|.+|+...+
T Consensus 182 ~~~~~~~~-----~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~~~~~~ 255 (567)
T PLN02479 182 GDPEFAWK-----PPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGM-NEGAVYLWTLPMFHCNGWCFTW 255 (567)
T ss_pred cccccccC-----CCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCC-CCCCEEEEecchhhhhhHHHHH
Confidence 21110000 11233567889999999999999999999988776665666777 8899999999999999976655
Q ss_pred HHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh-cccChHHHHHHH----------HHHHh
Q psy2835 227 YSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG-KQTTGVKRWIAN----------YAKST 295 (305)
Q Consensus 227 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~sl~~~~~~----------~a~~~ 295 (305)
...+..|.++++ ...+ +..+++.++++++|++.++|+++..|.++..... .++++++.++++ ...+.
T Consensus 256 ~~~~~~g~~~~~-~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~ 333 (567)
T PLN02479 256 TLAALCGTNICL-RQVT-AKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK 333 (567)
T ss_pred HHHhhcCceEec-cCCC-HHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc
Confidence 556666666555 4444 6899999999999999999999999987654332 245666544332 22334
Q ss_pred hhHHHhhh
Q psy2835 296 SLQHYMAY 303 (305)
Q Consensus 296 g~~~~~~~ 303 (305)
|.++++.|
T Consensus 334 ~~~~~~~y 341 (567)
T PLN02479 334 GFRVTHTY 341 (567)
T ss_pred CCceeccc
Confidence 66666655
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=262.11 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=214.1
Q ss_pred hHHHHHHHhcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+++...+ .+|+..++.+ +++.+||+||.++ ++++|..|.+.|+++||+|+++++|+.+++++++||+++|++++|++
T Consensus 7 ~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~-~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~ 84 (504)
T PRK07514 7 DALRAAF-ADRDAPFIETPDGLRYTYGDLDAA-SARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLN 84 (504)
T ss_pred HHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECC
Confidence 4556666 7788777665 6778999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+..+.+++..+++.++++++++++.. .+.+....... ....++.++... ...+.+..... +.. .....
T Consensus 85 ~~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~---~~~---~~~~~ 152 (504)
T PRK07514 85 TAYTLAELDYFIGDAEPALVVCDPAN-FAWLSKIAAAA-GAPHVETLDADG----TGSLLEAAAAA---PDD---FETVP 152 (504)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEccch-hHHHHHhhhcc-CCceEEEecCCC----cccHHHhhhhc---Ccc---cCccc
Confidence 99999999999999999999998773 34444433322 222233333211 11122222111 110 00123
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++++++|+|||||||.||+|.+||+++...+......+++ .++|++++..|++|..|+...++.++..|+++++.+.
T Consensus 153 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 231 (504)
T PRK07514 153 RGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRF-TPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPK 231 (504)
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCC-CCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCC
Confidence 467899999999999999999999999999998888788888 8999999999999999988888899999999999987
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.. +..+++.+ +++|++..+|.++..+++........++++|.++.+
T Consensus 232 ~~-~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 277 (504)
T PRK07514 232 FD-PDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISG 277 (504)
T ss_pred CC-HHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEec
Confidence 65 68888888 479999999999999987654455567788876653
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=261.52 Aligned_cols=290 Identities=22% Similarity=0.304 Sum_probs=217.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.+.++|+..++.+.++.+||.||.++ ++++|.+|.+.|+.+||+|+++++|+.+++++++||+++|++++|++|
T Consensus 25 ~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~-~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 103 (541)
T TIGR03205 25 DLLSKAAADYGPRPALEFRDRPITYTELEAM-AETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSP 103 (541)
T ss_pred HHHHHHHHHcCCCceEEECCcEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCC
Confidence 5678888999998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH-HHHHHHHhccCCCccEEEEccCCC------------CCCCcccHHHHHHhccC
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ-LEKILKVKAQCPKLKAIVQYEGKP------------DKPGVISWDELMELGRA 149 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~l~~~~~~ 149 (305)
..+.+++.+++++++++.+++++... .+...+.... .....+++..... ......+++++......
T Consensus 104 ~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (541)
T TIGR03205 104 LDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAA 182 (541)
T ss_pred CCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCcccccHHHHHhcCCC
Confidence 99999999999999999999986421 1112221111 1123333332211 01123445555543211
Q ss_pred CCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh------ccCCCCceEEEeCchhHHHHHH
Q psy2835 150 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF------KLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
.... ....++++++++|||||||.||+|+++|+++....... ..+ .. ...+++++..|++|.+++.
T Consensus 183 ~~~~------~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~ 254 (541)
T TIGR03205 183 PAEW------PAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATR-GDVERVICVLPLFHIYALT 254 (541)
T ss_pred CCCC------CCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccC-CCCceEEEeccHHHHHHHH
Confidence 1110 12356899999999999999999999999987654322 211 12 3457999999999999988
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------H-H
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------Y-A 292 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~-a 292 (305)
..++.++..|+++++.+..+ +..+++.++++++|++.++|+++..+.+.......+++++|.++.+ + .
T Consensus 255 ~~~~~~l~~g~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~ 333 (541)
T TIGR03205 255 VILLRSLRRGDLISLHQRFD-VAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFE 333 (541)
T ss_pred HHHHHHHhcCCEEEecCCCC-HHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHH
Confidence 87889999999998887655 7999999999999999999999999887543344456777766543 2 2
Q ss_pred HHhhhHHHhhh
Q psy2835 293 KSTSLQHYMAY 303 (305)
Q Consensus 293 ~~~g~~~~~~~ 303 (305)
...|.++++.|
T Consensus 334 ~~~~~~~~~~Y 344 (541)
T TIGR03205 334 RKTGLKLKSGW 344 (541)
T ss_pred HHhCCCeeccc
Confidence 23566666655
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=259.88 Aligned_cols=263 Identities=20% Similarity=0.214 Sum_probs=215.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.++..+.++|+..++.+.++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 21 ~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~-~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~ 99 (542)
T PRK07786 21 NQLARHALMQPDAPALRFLGNTTTWRELDDR-VAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNF 99 (542)
T ss_pred HHHHHHHHHCCCCeEEEeCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCc
Confidence 4577778899998888888999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.+++++.++++++++... .+.+.......+..+.++..++.. ..+..+++++.......... ...
T Consensus 100 ~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~ 171 (542)
T PRK07786 100 RLTPPEIAFLVSDCGAHVVVTEAAL-APVATAVRDIVPLLSTVVVAGGSS-DDSVLGYEDLLAEAGPAHAP------VDI 171 (542)
T ss_pred cCCHHHHHHHHHhCCCcEEEEccch-HHHHHHhhhccCccceEEEecCCC-cccccCHHHHhhccCCCCCC------CCC
Confidence 9999999999999999999998763 345544444455666666554321 23345676665433211111 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK- 241 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~- 241 (305)
..+++++++|||||||.||+|.+||+++...+......+++...++++++..|++|.+|+. .++.++..|+++++.+.
T Consensus 172 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~ 250 (542)
T PRK07786 172 PNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG-SMLPGLLLGAPTVIYPLG 250 (542)
T ss_pred CCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHH-HHHHHHHccCEEEEccCC
Confidence 4578999999999999999999999999988877776666524678999999999999884 58999999999998652
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM 275 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 275 (305)
...|..+++.++++++|+++++|+++..+.....
T Consensus 251 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~ 284 (542)
T PRK07786 251 AFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQ 284 (542)
T ss_pred CcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcc
Confidence 2347999999999999999999999999987643
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=261.46 Aligned_cols=275 Identities=19% Similarity=0.186 Sum_probs=217.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 7 ~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~-~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~ 85 (533)
T PRK07798 7 DLFEAVADAVPDRVALVCGDRRLTYAELEER-ANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNY 85 (533)
T ss_pred HHHHHHHHhCCCceEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCc
Confidence 6889999999998888889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC---CCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK---PGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
.++.+++.++++.+++++++++... ...+.++....+..+.++.+++.... .+..+++++..........
T Consensus 86 ~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 158 (533)
T PRK07798 86 RYVEDELRYLLDDSDAVALVYEREF-APRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDF------ 158 (533)
T ss_pred CCCHHHHHHHHhhcCCCEEEEchhh-HHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCC------
Confidence 9999999999999999999998773 46666666666667777766644322 2344677766543221111
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---------------ccCCCCceEEEeCchhHHHHHHH
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---------------KLESAALSVISFLPLSHIAAQTV 224 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---------------~~~~~~~~~l~~~pl~~~~g~~~ 224 (305)
....++.++|+|||||||.||+|++||+++..........+ .. ..+++++...|++|..++.
T Consensus 159 -~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pl~~~~~~~- 235 (533)
T PRK07798 159 -GERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAA-GPGMRRFPAPPLMHGAGQW- 235 (533)
T ss_pred -CCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccC-CCCceEEEecchhhhhhHH-
Confidence 11234457899999999999999999999987554432221 11 3568899999999999986
Q ss_pred HHHHHHHhCcEEEEeC--CccchhHHHHHhhhcCCcEEEechHHHH-HHHHHHH-HhhcccChHHHHHH
Q psy2835 225 DIYSVMTVAATLWFAD--KNALKGSLINTLLEVRPHVFLAVPRVWE-KIHEKLM-AVGKQTTGVKRWIA 289 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~--~~~~~~~~~~~i~~~~vt~~~~~P~~~~-~l~~~~~-~~~~~~~sl~~~~~ 289 (305)
.++.++..|+++++.+ ..+ +..+++.++++++|++.++|..+. .+.+... ....+++++|.++.
T Consensus 236 ~~~~~l~~G~~~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~ 303 (533)
T PRK07798 236 AAFAALFSGQTVVLLPDVRFD-ADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIAS 303 (533)
T ss_pred HHHHHHhcCceEEEecCCCcC-HHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEE
Confidence 5899999999999998 444 789999999999999999987664 3444333 33445667765543
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=264.43 Aligned_cols=286 Identities=11% Similarity=0.122 Sum_probs=222.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++ |++.++.+.++.+||+|+.++ ++++|..|.+.|+++|++|+++++|+.+++++++||+++|++++++.+
T Consensus 29 ~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~-~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~ 105 (536)
T PRK10946 29 DILTRHAA--SDAIAVICGERQFSYRELNQA-SDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALF 105 (536)
T ss_pred HHHHHhhC--CCCeEEEeCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCc
Confidence 45666665 888888788899999999996 999999999999999999999999999999999999999999888888
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
.....++..+++.++++.+++++... ......+...++..+.++..+. .+...+.++.........
T Consensus 106 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------ 175 (536)
T PRK10946 106 SHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND----DGEHSLDDAINHPAEDFT------ 175 (536)
T ss_pred cccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC----CCCccHHHHhhCcccccc------
Confidence 88888999999999999999986521 1223334444555555553322 122334444433221110
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.....++++++++|||||||.||+|++||+++..++......+++ .++|++++.+|++|.+++.. .++.++..|++++
T Consensus 176 ~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~ 254 (536)
T PRK10946 176 ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGF-TPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVV 254 (536)
T ss_pred cCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCC-CCCceEEEecCccccccchhhhHHHHhhcCcEEE
Confidence 123467899999999999999999999999999999888888888 89999999999999888654 5788899999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+... +..+++.++++++|++.++|.++..+++.... ...+++++|.++++ +...+|+++++.|
T Consensus 255 ~~~~~~-~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~Y 332 (536)
T PRK10946 255 LAPDPS-ATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVF 332 (536)
T ss_pred ECCCCC-HHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEee
Confidence 987765 68899999999999999999999999876322 23446666655443 2334676666655
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=273.58 Aligned_cols=258 Identities=12% Similarity=0.096 Sum_probs=203.2
Q ss_pred hHHHHHHHh--cccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLER--YHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~--~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++.+.+.. +||..++.+ ++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 8 ~~~~~~a~~~~~pd~~a~~~-~~~~Ty~eL~~~-~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi 85 (705)
T PRK06060 8 GLLAEQASEAGWYDRPAFYA-ADVVTHGQIHDG-AARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLA 85 (705)
T ss_pred HHHHHHHhhccCCCceEEEe-cCceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEec
Confidence 455666664 678777755 458999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
+|.++.+++.++++++++++++++.+. .+.+.. . .++ ...++........+.. ..
T Consensus 86 ~p~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~----~----~~~------------~~~~~~~~~~~~~~~~----~~ 140 (705)
T PRK06060 86 NPELHRDDHALAARNTEPALVVTSDAL-RDRFQP----S----RVA------------EAAELMSEAARVAPGG----YE 140 (705)
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEchHH-hhhhcc----c----ccc------------hhhhhhhhccccCCCC----CC
Confidence 999999999999999999999998652 122110 0 000 0111111110000000 01
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH-HhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII-QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
...++++++++|||||||.||||.++|+++..++.... ..+++ .++|++++..|++|.+++...++.++..|+++++.
T Consensus 141 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~ 219 (705)
T PRK06060 141 PMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRL-TPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVIN 219 (705)
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCC-CCcceeEEeccchhhcchhHHHHHHHhcCCEEEEe
Confidence 23568999999999999999999999999998876653 45677 88999999999999988877788999999999998
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+....+..+.+.++++++|+++++|+++.++++... ..++++||.++++
T Consensus 220 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~g 268 (705)
T PRK06060 220 SAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSA 268 (705)
T ss_pred CCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEe
Confidence 865557888899999999999999999999987542 3456788876654
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=263.96 Aligned_cols=280 Identities=20% Similarity=0.236 Sum_probs=213.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|.+.++++|+..++.+.++.+||+||.++ ++++|+.|. +.|+++||+|+++++|+.+++++++||+++|++++|++
T Consensus 29 ~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~-~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 107 (560)
T PRK08751 29 EVFATSVAKFADRPAYHSFGKTITYREADQL-VEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVN 107 (560)
T ss_pred HHHHHHHHhCCCCceEEECCceeeHHHHHHH-HHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccC
Confidence 5778889999998888788899999999996 999999997 68999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC------------------------CCCCc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP------------------------DKPGV 137 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------~~~~~ 137 (305)
|.++.+++.+++++.+++++++++.. ...+.+.....+ ...++...... ..++.
T Consensus 108 p~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (560)
T PRK08751 108 PLYTPRELKHQLIDSGASVLVVIDNF-GTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGA 185 (560)
T ss_pred ccCCHHHHHHHHHhcCCeEEEEcchh-HHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhhhccccccCCCcc
Confidence 99999999999999999999998774 344444433333 22232221000 00112
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhcc---CCC-CceEEEe
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL---ESA-ALSVISF 213 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~---~~~-~~~~l~~ 213 (305)
..+++........... .....++++++++|||||||.||+|++||.++..++......++. ..+ .+.+++.
T Consensus 186 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (560)
T PRK08751 186 IRFREALALGRKHSMP-----TLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITA 260 (560)
T ss_pred ccHHHHHhccCCCCCC-----CCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEe
Confidence 2233333221110000 113456899999999999999999999999998887765555432 033 3577889
Q ss_pred CchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 214 LPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 214 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.|++|.+|+....+..+..|+++++......+..+++.++++++|++.++|.++..+.+.......++++||.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~g 337 (560)
T PRK08751 261 LPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGG 337 (560)
T ss_pred cChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeC
Confidence 99999999876667778888888776654447899999999999999999999999988655455567788877654
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=260.05 Aligned_cols=276 Identities=16% Similarity=0.141 Sum_probs=214.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++.+|+..++.+.++.+||+||.++ ++++|..|.+.|+++|++|+++++|+.+++++++||+++|++++|++|
T Consensus 37 ~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~-~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p 115 (567)
T PRK06178 37 EYLRAWARERPQRPAIIFYGHVITYAELDEL-SDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSP 115 (567)
T ss_pred HHHHHHHHHCCCceEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCC
Confidence 5678888899998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCC--------C--------cccHHHHHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKP--------G--------VISWDELMEL 146 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~--------~~~~~~l~~~ 146 (305)
..+.+++.+++++.+++++++++.. .+.+.++.... ..+.++........+ . ...+.++...
T Consensus 116 ~~~~~~~~~~l~~~~~~~ii~~~~~-~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (567)
T PRK06178 116 LFREHELSYELNDAGAEVLLALDQL-APVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPA 193 (567)
T ss_pred CCCHHHHHHHHHhcCCcEEEEccch-HHHHHHhhccC-CcceEEEeccccccccccccccccccccccccccccccHHHH
Confidence 9999999999999999999998874 45555554333 233333222110000 0 0112222221
Q ss_pred ccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH-hhccCCCCceEEEeCchhHHHHHHHH
Q psy2835 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVD 225 (305)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~g~~~~ 225 (305)
....+... ......++++++|+|||||||.||+|++||.++......... ...+ ..+|++++.+|++|++|+...
T Consensus 194 ~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~ 269 (567)
T PRK06178 194 LRACTAPV---PLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG-GEDSVFLSFLPEFWIAGENFG 269 (567)
T ss_pred hhcccccc---ccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC-CCCcEEEEecchHHHHHHHHH
Confidence 11111100 011346789999999999999999999999999886655433 2455 889999999999999998777
Q ss_pred HHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHH
Q psy2835 226 IYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKR 286 (305)
Q Consensus 226 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~ 286 (305)
++.++..|+++++.+..+ +..+++.++++++|.+.++|..+..+.+.......++++++.
T Consensus 270 ~~~~l~~G~~~~l~~~~~-~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~ 329 (567)
T PRK06178 270 LLFPLFSGATLVLLARWD-AVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQ 329 (567)
T ss_pred HHHHHHcCceEEEeCCCC-HHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchhee
Confidence 899999999999998765 799999999999999999999999887754333445556554
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=261.30 Aligned_cols=291 Identities=17% Similarity=0.147 Sum_probs=216.1
Q ss_pred hhHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
.+.+++.++++|+..++.+.++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 21 ~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~-~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 99 (545)
T PRK08162 21 LSFLERAAEVYPDRPAVIHGDRRRTWAETYAR-CRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLN 99 (545)
T ss_pred HHHHHHHHHHCCCCeEEEECCeEEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccc
Confidence 35778888999998888888889999999995 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC------CCCcccHHHHHHhccCCCCchh
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD------KPGVISWDELMELGRAAPDESL 155 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 155 (305)
++.+.+++.+++++++++.++++.+. .+.+.+.....+....++ +..... ..+..+++.+..........
T Consensus 100 ~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (545)
T PRK08162 100 TRLDAASIAFMLRHGEAKVLIVDTEF-AEVAREALALLPGPKPLV-IDVDDPEYPGGRFIGALDYEAFLASGDPDFAW-- 175 (545)
T ss_pred cccChHHHHHHHHhCCCeEEEEccch-hhHHHHHHhhCCCCceEE-EecCccccccCCCcccccHHHHhccCCccccc--
Confidence 99999999999999999999999874 455555444343322222 221110 01223455554322111000
Q ss_pred HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
......+++++|+|||||||.||+|+++|+++..+.......+++ ..++++++.+|++|.+|....++..+ .|++
T Consensus 176 ---~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~ 250 (545)
T PRK08162 176 ---TLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGM-PKHPVYLWTLPMFHCNGWCFPWTVAA-RAGT 250 (545)
T ss_pred ---cCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCC-CCCCeeEeccCcHhhhhHHHHHHHHH-HccE
Confidence 012244678999999999999999999999988777665666677 88899999999999998866444445 4555
Q ss_pred EEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHH----------HHHHHHHHHhhhHHHhhh
Q psy2835 236 LWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVK----------RWIANYAKSTSLQHYMAY 303 (305)
Q Consensus 236 ~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~----------~~~~~~a~~~g~~~~~~~ 303 (305)
.++..... +..+++.++++++|++.++|+++..|++........+.+.+ ..+..+.++.|+++++.|
T Consensus 251 ~~~~~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Y 327 (545)
T PRK08162 251 NVCLRKVD-PKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVY 327 (545)
T ss_pred EEEeCCCC-HHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHhCCceeecc
Confidence 55555544 79999999999999999999999999875433222232222 122223344577777665
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=283.45 Aligned_cols=289 Identities=14% Similarity=0.058 Sum_probs=216.9
Q ss_pred HHHHHHHhc-ccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 4 FLKLGLERY-HSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 4 ~l~~~~~~~-~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
.+.+.++++ |+..++.+ +++++||+|+.++ ++++|+.|.+ |+++||+|+++++|+++++++++||+++|++++|+|
T Consensus 636 ~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~-~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 713 (1140)
T PRK06814 636 ALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTG-AFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMIN 713 (1140)
T ss_pred HHHHHHHHcCCCCeEeECCCCCccCHHHHHHH-HHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcC
Confidence 344455555 46666655 5689999999996 9999999975 999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHH--HHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKI--LKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
++.+.+++.++++++++++++++++. .+.. .+...+.+....++.+++... ....++.+........+. .. .
T Consensus 714 ~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~-~~--~ 787 (1140)
T PRK06814 714 FSAGIANILSACKAAQVKTVLTSRAF-IEKARLGPLIEALEFGIRIIYLEDVRA--QIGLADKIKGLLAGRFPL-VY--F 787 (1140)
T ss_pred CCCCHHHHHHHHHHcCCCEEEecHHH-HhhhcchhHHHHhccCceEEEehHhhc--cCChHHHHHHHhhccCCc-cc--c
Confidence 99999999999999999999998753 2211 112222223334444433211 111111111110000000 00 0
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
....++++++++|||||||.||||++||+++..+.......+++ +++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 788 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~ 866 (1140)
T PRK06814 788 CNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDF-SPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLY 866 (1140)
T ss_pred CCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCC-CCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEe
Confidence 13467999999999999999999999999999988888888888 99999999999999999978889999999999998
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+....+..+.+.++++++|++..+|++++.+.+.. ...+++++|.++.+ +.+..|.++++.|
T Consensus 867 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~Y 939 (1140)
T PRK06814 867 PSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGY 939 (1140)
T ss_pred cCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEecc
Confidence 76544567889999999999999999999887642 34567777765543 3344567777665
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=259.28 Aligned_cols=267 Identities=16% Similarity=0.167 Sum_probs=214.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||.||.++ ++++|.+|.+.|++++++|+++++|+++++++++||+++|++++|+++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~-v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 84 (497)
T PRK06145 6 ASIAFHARRTPDRAALVYRDQEISYAEFHQR-ILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINY 84 (497)
T ss_pred HHHHHHHHHCCCceEEEECCcceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEeccc
Confidence 6788889999998888889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++..++++++++.+.. .. ... ....+.++... ...+..+.......... ...
T Consensus 85 ~~~~~~~~~~l~~~~~~~~i~~~~~~-~~-~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~ 146 (497)
T PRK06145 85 RLAADEVAYILGDAGAKLLLVDEEFD-AI-VAL------ETPKIVIDAAA----QADSRRLAQGGLEIPPQ------AAV 146 (497)
T ss_pred ccCHHHHHHHHHhcCCcEEEEccchh-hh-hhc------ccceEEecCcc----cchhHHHhccCCCCCCC------CCC
Confidence 99999999999999999999987631 11 111 01122222110 00111111111100000 134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||+|++||+++..........+++ ..+++++...|++|.+++....+.++..|+++++.+..
T Consensus 147 ~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~ 225 (497)
T PRK06145 147 APTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGL-TASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREF 225 (497)
T ss_pred CccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCC-CCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcC
Confidence 67899999999999999999999999998777666667788 89999999999999999877778889999999998876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
. +..+++.++++++|++.++|+++..+++.......+++++|.++.+
T Consensus 226 ~-~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~g 272 (497)
T PRK06145 226 D-PEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGG 272 (497)
T ss_pred C-HHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEec
Confidence 5 7999999999999999999999999987655555566777765443
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=261.59 Aligned_cols=292 Identities=15% Similarity=0.157 Sum_probs=217.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|++.+.++|+..++...++.+||+||.++ ++++|+.|.+. |+++||+|+++++|+++++++++||+++|+++++++
T Consensus 28 ~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~ 106 (562)
T PRK12492 28 EVFERSCKKFADRPAFSNLGVTLSYAELERH-SAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTN 106 (562)
T ss_pred HHHHHHHHhCCCCeeEecCCceeeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccC
Confidence 5677888899998888778889999999996 99999999985 999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEcc--C----------------------CCCCCCc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE--G----------------------KPDKPGV 137 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~----------------------~~~~~~~ 137 (305)
+..+.+++.+++++++++++++++.. .+......... .....+... + ....+..
T Consensus 107 ~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (562)
T PRK12492 107 PLYTAREMRHQFKDSGARALVYLNMF-GKLVQEVLPDT-GIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQA 184 (562)
T ss_pred ccCCHHHHHHHHhccCceEEEecccc-chHHHHhhhcc-CceEEEeechhhccccccchhcccccccccccccccCCccc
Confidence 99999999999999999999998652 23332222211 111111000 0 0000122
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc---------cCCC-C
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK---------LESA-A 207 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~~-~ 207 (305)
..|+++.......... ......+++++|+|||||||.||+|++||+++..++......+. + .. .
T Consensus 185 ~~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 258 (562)
T PRK12492 185 VPFKQALRQGRGLSLK-----PVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLM-KEGQ 258 (562)
T ss_pred ccHHHHHhccCCCCCC-----CCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccc-cCCC
Confidence 3444444322111100 01345689999999999999999999999999887766555442 2 22 3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH
Q psy2835 208 LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW 287 (305)
Q Consensus 208 ~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~ 287 (305)
+++++.+|++|.+|+...++..+..|+++++......+..+++.++++++|++..+|+++..+++.......+++++|.+
T Consensus 259 ~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~ 338 (562)
T PRK12492 259 EVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLT 338 (562)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEE
Confidence 57899999999999887778888899988777554446889999999999999999999999988665555667777765
Q ss_pred HHH-----------HHHHhhhHHHhhh
Q psy2835 288 IAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 288 ~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+ |.+..|+++++.|
T Consensus 339 ~~gG~~~~~~~~~~~~~~~~~~~~~~Y 365 (562)
T PRK12492 339 NSGGTALVKATAERWEQLTGCTIVEGY 365 (562)
T ss_pred EeccccCCHHHHHHHHHHhCCceeecc
Confidence 443 3444677776665
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=288.71 Aligned_cols=273 Identities=15% Similarity=0.153 Sum_probs=217.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++|++|
T Consensus 462 ~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~-~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~ 540 (1296)
T PRK10252 462 ALVAQQAAKTPDAPALADARYQFSYREMREQ-VVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDT 540 (1296)
T ss_pred HHHHHHHHhCCCCeEEEcCCCcEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCc
Confidence 5678889999999888889999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++++++++++++... ...+.+ .+... ...+.. ........+. ...
T Consensus 541 ~~p~~~~~~~l~~~~~~~~i~~~~~-~~~~~~----~~~~~-~~~~~~------------~~~~~~~~~~-------~~~ 595 (1296)
T PRK10252 541 GYPDDRLKMMLEDARPSLLITTADQ-LPRFAD----VPDLT-SLCYNA------------PLAPQGAAPL-------QLS 595 (1296)
T ss_pred cCHHHHHHHHHHhCCCCEEEECcch-hhhccc----CCCce-eeeccc------------ccccccCCCC-------CCC
Confidence 9999999999999999999998763 222211 11111 111110 0000000000 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||||+++|+++.+.+......+++ +++|++++..|++|..+. +.++.++..|+++++.+..
T Consensus 596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~ 673 (1296)
T PRK10252 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPL-TADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMAEPE 673 (1296)
T ss_pred CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCC-CCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEECChh
Confidence 57899999999999999999999999999999998889999 999999999999997775 5689999999999998642
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh--cccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG--KQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
.+|..+++.++++++|++.++|+++..+++...... ..++++|.++++ |....|+++++.|
T Consensus 674 ~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~Y 749 (1296)
T PRK10252 674 AHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLY 749 (1296)
T ss_pred ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCC
Confidence 237889999999999999999999999987643322 345777765544 2223466666655
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=259.15 Aligned_cols=293 Identities=20% Similarity=0.193 Sum_probs=219.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|...++++|+..++.+.++.+||+||.++ ++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|++|
T Consensus 27 ~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~-~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~ 105 (557)
T PRK07059 27 DLLEESFRQYADRPAFICMGKAITYGELDEL-SRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNP 105 (557)
T ss_pred HHHHHHHHHcCCCceEEEcCceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCc
Confidence 5677888999998888788899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCC-----------------------CCCCCccc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK-----------------------PDKPGVIS 139 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------------~~~~~~~~ 139 (305)
..+.+++.+++++.+++++++++.. ...+.++.... ..+.++..... ...++...
T Consensus 106 ~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (557)
T PRK07059 106 LYTPRELEHQLKDSGAEAIVVLENF-ATTVQQVLAKT-AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVR 183 (557)
T ss_pred ccCHHHHHHHHHccCceEEEEchhh-HHHHHHhhccc-CCceeEEecccccccccccccccccccccccccccCCCCccc
Confidence 9999999999999999999998763 33444333222 22222221100 00022233
Q ss_pred HHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc----cC--CCCceEEEe
Q psy2835 140 WDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK----LE--SAALSVISF 213 (305)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~--~~~~~~l~~ 213 (305)
++++.......... .....++++++|+|||||||.||+|+++|.++..++........ .. ...+.+++.
T Consensus 184 ~~~~~~~~~~~~~~-----~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (557)
T PRK07059 184 FNDALAEGARQTFK-----PVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA 258 (557)
T ss_pred HHHHhhccCCCCCC-----CCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEe
Confidence 44444322111110 12346789999999999999999999999999876654332221 10 124578889
Q ss_pred CchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH---
Q psy2835 214 LPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN--- 290 (305)
Q Consensus 214 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~--- 290 (305)
+|++|.+++....+.++..|++.++.+....+..+++.++++++|.+.++|.++..+.++......+++++|.++.+
T Consensus 259 ~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~ 338 (557)
T PRK07059 259 LPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMA 338 (557)
T ss_pred CCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEecccc
Confidence 99999998877678888899988877755457889999999999999999999999988655555566777755443
Q ss_pred --------HHHHhhhHHHhhh
Q psy2835 291 --------YAKSTSLQHYMAY 303 (305)
Q Consensus 291 --------~a~~~g~~~~~~~ 303 (305)
|...+|+++++.|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~Y 359 (557)
T PRK07059 339 VQRPVAERWLEMTGCPITEGY 359 (557)
T ss_pred CCHHHHHHHHHHhCCCeeecc
Confidence 3344677777766
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=256.25 Aligned_cols=266 Identities=22% Similarity=0.287 Sum_probs=207.1
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++.+.+.++|+..++.+ +++.+||+||.++ +.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 32 ~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~-~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 110 (546)
T PLN02330 32 DFVLQDAELYADKVAFVEAVTGKAVTYGEVVRD-TRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGA 110 (546)
T ss_pred HHHhhhhhcCCCccEEEecCCCCcccHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccC
Confidence 567777888899777654 3578999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
++..+.+++.+++++++++++++++.. ...+.++. . .++.++... ..+...|+++........... ...
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~-----~-~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~ 179 (546)
T PLN02330 111 NPTALESEIKKQAEAAGAKLIVTNDTN-YGKVKGLG-----L-PVIVLGEEK-IEGAVNWKELLEAADRAGDTS---DNE 179 (546)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEccch-hhhHhhcC-----C-cEEEecCCC-CCCcccHHHHHhhccccCccc---ccc
Confidence 999999999999999999999999874 34443321 1 133333221 123455777665432211110 011
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC---CCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE---SAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~---~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++++++++|||||||.||||.+||.++..++... .++.. ...++.+..+|++|.+|+...++.++..|++++
T Consensus 180 ~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~ 257 (546)
T PLN02330 180 EILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVV 257 (546)
T ss_pred cCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEE
Confidence 2356899999999999999999999999998866532 22220 235689999999999998777889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccCh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTG 283 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~s 283 (305)
+.+.++ +..+++.++++++|++.++|+++..+++.......++++
T Consensus 258 ~~~~~~-~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 302 (546)
T PLN02330 258 VMSRFE-LRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSK 302 (546)
T ss_pred EecccC-HHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccch
Confidence 998776 689999999999999999999999998754443334443
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=259.09 Aligned_cols=255 Identities=15% Similarity=0.157 Sum_probs=203.2
Q ss_pred HHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC
Q psy2835 6 KLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83 (305)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~ 83 (305)
+..+.++||..++.+ +++.+||+|+.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++.
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~-v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~ 80 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDAL-VGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWR 80 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCcc
Confidence 345677888776654 6789999999995 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccC
Q psy2835 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 163 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (305)
.+.+++.+++++.+++++++++... .. .. ....++++........... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~ii~~~~~~-~~------~~----------------~~~~~~~~~~~~~~~~~~~----~~~~~ 133 (488)
T PRK09088 81 LSASELDALLQDAEPRLLLGDDAVA-AG------RT----------------DVEDLAAFIASADALEPAD----TPSIP 133 (488)
T ss_pred CCHHHHHHHHHhCCCCEEEEcchhh-cc------cc----------------cccchhhhhhhcccccccc----CCCCC
Confidence 9999999999999999999986521 10 00 0011222221111110100 01235
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA 243 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~ 243 (305)
.+++++++|||||||.||+|.+||+++...+......... ..+|++++.+|++|++|+...++.++..|+++++.+...
T Consensus 134 ~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~ 212 (488)
T PRK09088 134 PERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRV-DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFE 212 (488)
T ss_pred CCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCC-CCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 6889999999999999999999999999887777666677 889999999999999999888889999999999887665
Q ss_pred chhHHHHHhh--hcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 244 LKGSLINTLL--EVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 244 ~~~~~~~~i~--~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+..++..+. ++++|+++.+|.+++.+.+.......++++||.++.+
T Consensus 213 -~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~g 260 (488)
T PRK09088 213 -PKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTG 260 (488)
T ss_pred -HHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEec
Confidence 677888775 4899999999999999987654444556777765544
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=237.19 Aligned_cols=292 Identities=20% Similarity=0.291 Sum_probs=237.0
Q ss_pred hhHHHHHHHhcccceeeec----cCCccchHHHHHHHHHHHHHHHHHcCCCCCCe-EEEEecCChhHHHHHHHHHHcCCe
Q psy2835 2 KAFLKLGLERYHSVCIIGF----NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHS-VCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~----~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~-V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
|++++...++.+|--.+.. +...+||.|+..+ +.+++.+|.+.|++++++ ++|+++-+.+|..++.||++.+++
T Consensus 63 R~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~-~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ip 141 (678)
T KOG1180|consen 63 RELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYER-VHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIP 141 (678)
T ss_pred HHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHH-HHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCe
Confidence 3455555555555322222 2357999999996 999999999999997776 999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC-------------CCcccHHHH
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK-------------PGVISWDEL 143 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~l 143 (305)
+|.+...+..+.+.|-|++++++.+|++.+ .+..+.....+++.++++|.++..... ....+++++
T Consensus 142 vVT~Y~TLGeeal~hsl~Et~~~~i~T~~~-LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v 220 (678)
T KOG1180|consen 142 VVTAYATLGEEALIHSLNETESTAIFTDSE-LLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDV 220 (678)
T ss_pred EEEEehhcChhhhhhhhccccceEEEeCHH-HHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHH
Confidence 999999999999999999999999999988 467777788999999999999852211 345689999
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
...+.....++ .++.++|+|+|||||||||.||||+++|+|+++.+.......+...+.|+++..+||.|+..+.
T Consensus 221 ~~lG~~~~~~~-----~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~ 295 (678)
T KOG1180|consen 221 EKLGKENEIPP-----HPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELT 295 (678)
T ss_pred HhhCCcCCCCC-----CCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHH
Confidence 98887653222 2347799999999999999999999999999999988777764328999999999999999998
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHH-------HHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhh
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSL-------INTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTS 296 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~-------~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g 296 (305)
+. +.+++.|+.+-..+.....+.- --.+...|||+|.++|++|+++-+....+....+.++.-+|..|...-
T Consensus 296 aE-~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K 374 (678)
T KOG1180|consen 296 AE-LVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERK 374 (678)
T ss_pred HH-HHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 84 7888899998877654321111 123456789999999999999999988888889999999998887655
Q ss_pred hHHHh
Q psy2835 297 LQHYM 301 (305)
Q Consensus 297 ~~~~~ 301 (305)
+..++
T Consensus 375 ~~~~~ 379 (678)
T KOG1180|consen 375 LSLIE 379 (678)
T ss_pred HHHHh
Confidence 54444
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=257.93 Aligned_cols=278 Identities=18% Similarity=0.244 Sum_probs=207.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++...++++|+..++.+.++.+||+||.++ +.++|.+|.+.|+++||+|+++++|+.++++++|||+++|++++|++|
T Consensus 28 ~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~-~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p 106 (563)
T PRK06710 28 KYVEQMASRYPEKKALHFLGKDITFSVFHDK-VKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNP 106 (563)
T ss_pred HHHHHHHHHCCCceEEEecCeeecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCc
Confidence 5677888999998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC--CCCC-----------------------c
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--DKPG-----------------------V 137 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-----------------------~ 137 (305)
..+.+++.++++..+++++++++.. ...+....... ....++...... ..+. .
T Consensus 107 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (563)
T PRK06710 107 LYTERELEYQLHDSGAKVILCLDLV-FPRVTNVQSAT-KIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETI 184 (563)
T ss_pred ccCHHHHHHHHhccCCeEEEEeccc-hhhhhccchhh-ccceeEEeccccccccccccccchhhcccccccccccccchh
Confidence 9999999999999999999998753 23322221111 111222110000 0000 0
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH-hhccCCCCceEEEeCch
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPL 216 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl 216 (305)
..|+.+..... ... .......+++++++|||||||.||+|.+||+++..+...... .++....++++++.+|+
T Consensus 185 ~~~~~~~~~~~----~~~--~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~ 258 (563)
T PRK06710 185 HLWNSVEKEVN----TGV--EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPF 258 (563)
T ss_pred hhhhhhhhccc----ccc--ccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCch
Confidence 01111111000 000 001123578999999999999999999999999865443222 23331345688999999
Q ss_pred hHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 217 SHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 217 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+|.+|+...++.++..|+++++.+.++ +..+++.++++++|++.++|+++..+++.......+++++|.++++
T Consensus 259 ~~~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~g 331 (563)
T PRK06710 259 FHVYGMTAVMNLSIMQGYKMVLIPKFD-MKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISG 331 (563)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcCCCC-HHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeC
Confidence 999998776778899999999987665 6899999999999999999999999987655455567888877654
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=251.59 Aligned_cols=244 Identities=18% Similarity=0.154 Sum_probs=200.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|++.+++.|+..++.+.++.+||+|+.++ ++++|++|.+.|. +|++|+|+++|+.++++++|||+++|++++|+++
T Consensus 5 ~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 82 (487)
T PRK07638 5 KEYKKHASLQPNKIAIKENDRVLTYKDWFES-VCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDI 82 (487)
T ss_pred HHHHHHHHhCCCCeEEecCCcEeeHHHHHHH-HHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCc
Confidence 5688889999998888888999999999996 9999999999984 7999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++.+++++++++... ...+.. ....++..++ +.+....... .... ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~------~~~~~~~~~~---------~~~~~~~~~~-~~~~-----~~~ 140 (487)
T PRK07638 83 KWKQDELKERLAISNADMIVTERYK-LNDLPD------EEGRVIEIDE---------WKRMIEKYLP-TYAP-----IEN 140 (487)
T ss_pred cCCHHHHHHHHHhCCCCEEEEeccc-ccchhh------ccceEEEehh---------hhhhhhhccc-cccc-----ccc
Confidence 9999999999999999999998753 122211 0111221111 2222211110 0000 122
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
..+++++|+|||||||.||+|+++|+++..++......+++ ..+|+++...|++|..++ ..++.++..|+++++.+.+
T Consensus 141 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~ 218 (487)
T PRK07638 141 VQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHM-KREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKF 218 (487)
T ss_pred CCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCc-CCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCC
Confidence 35778999999999999999999999999988887777888 899999999999998765 5588999999999999876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
. +..+++.++++++|++.++|+++..|.+.
T Consensus 219 ~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 248 (487)
T PRK07638 219 I-PNQVLDKLETENISVMYTVPTMLESLYKE 248 (487)
T ss_pred C-HHHHHHHHHHcCCeEEEeCcHHHHHHHhC
Confidence 5 79999999999999999999999999875
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=256.91 Aligned_cols=261 Identities=18% Similarity=0.225 Sum_probs=212.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|.+.+..+|+..++...++.+||+||.++ +.++|..|.+.|+++||+|+++++|+.+++++++||+++|++++|+++
T Consensus 4 ~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~-~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~ 82 (502)
T TIGR01734 4 EAIQAFAETYPQTIAYRYQGQELTYQQLKEQ-SDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDT 82 (502)
T ss_pred HHHHHHHHHCCCceEEEcCCcEEeHHHHHHH-HHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCC
Confidence 6788899999998888888999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++..+++.++++.+.. ... .... ++.+.. ...+..... + ... ....
T Consensus 83 ~~~~~~~~~~~~~~~~~~ii~~~~~~-~~~-------~~~~-~~~~~~---------~~~~~~~~~--~-~~~---~~~~ 138 (502)
T TIGR01734 83 SIPSERIEMIIEAAGPELVIHTAELS-IDA-------VGTQ-IITLSA---------LEQAETSGG--P-VSF---DHAV 138 (502)
T ss_pred cChHHHHHHHHHhcCCCEEEeccccc-ccc-------cCCc-eEEchH---------hhhhhhhcC--C-ccc---cccC
Confidence 99999999999999999999987631 111 1111 111110 111111111 0 000 0123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||+|.+||+++..++......++. ..++++++..|++|..++. .++.++..|+++++.+..
T Consensus 139 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~ 216 (502)
T TIGR01734 139 KGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPL-SEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLHCLDKD 216 (502)
T ss_pred CCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCC-CCCceEEeecCceechhHH-HHHHHHHCCCEEEEcCHH
Confidence 57899999999999999999999999999998888888888 8899999999999988774 588999999999998754
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..+..+++.++++++|.+.++|++++.++........++++++.++++
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~ 266 (502)
T TIGR01734 217 ITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFC 266 (502)
T ss_pred HhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEc
Confidence 236899999999999999999999988876544445567788766554
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=261.62 Aligned_cols=265 Identities=17% Similarity=0.161 Sum_probs=202.4
Q ss_pred hHHHHHHHhcccceeeecc---------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGFN---------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~---------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
++|++.++++|+..++.+. .+.+||+||.++ ++++|++|.+. +++||+|+++++|+++++++++||+++
T Consensus 25 ~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~~ 102 (631)
T PRK07769 25 RHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGAR-NRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALYA 102 (631)
T ss_pred HHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHH-HHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHHc
Confidence 5778888889997777542 147999999996 99999999987 899999999999999999999999999
Q ss_pred CCeEEec-CCCCC--HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCC--ccEEEEccCCCCCCCcccHHHHHHhcc
Q psy2835 74 GGFAAGM-YTTNS--PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK--LKAIVQYEGKPDKPGVISWDELMELGR 148 (305)
Q Consensus 74 G~~~v~i-~~~~~--~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~ 148 (305)
|++++|+ ++..+ .+++.++++++++++++++.+. .+.+.+.....+. ...++.++.... .. ..
T Consensus 103 G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~ 170 (631)
T PRK07769 103 GRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDS-AEGVRKFFRARPAKERPRVIAVDAVPD---------EV--GA 170 (631)
T ss_pred CCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHH-HHHHHHHHhhccccccceEEEcccccc---------cc--cc
Confidence 9999999 55554 6889999999999999998763 3444443332221 123332221100 00 00
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 228 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~ 228 (305)
.... ....++++++|+|||||||.||||++||+++..++......+++ .++|++++.+|++|.+|+.. ++.
T Consensus 171 -~~~~------~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~Pl~h~~gl~~-~~~ 241 (631)
T PRK07769 171 -TWVP------PEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG-QEGDRGVSWLPFFHDMGLIT-VLL 241 (631)
T ss_pred -ccCC------CCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCC-CCcceEEEeCCCcCchhhHH-HHH
Confidence 0000 12356899999999999999999999999999988887777888 89999999999999999876 566
Q ss_pred HHHhCcEEEEeCCc-c--chhHHHHHhhhcCC---cEEEechHHHHHHHHHH---HH--hhcccChHHHHHHH
Q psy2835 229 VMTVAATLWFADKN-A--LKGSLINTLLEVRP---HVFLAVPRVWEKIHEKL---MA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 229 ~l~~G~~~v~~~~~-~--~~~~~~~~i~~~~v---t~~~~~P~~~~~l~~~~---~~--~~~~~~sl~~~~~~ 290 (305)
++..|+++++.+.. . +|..+++.++++++ |++.++|.++..+.+.. .. ...++++||.++++
T Consensus 242 ~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~g 314 (631)
T PRK07769 242 PALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNG 314 (631)
T ss_pred HHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEec
Confidence 77789999888642 1 47889999999986 78899999887776531 11 13568888876654
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=260.14 Aligned_cols=264 Identities=15% Similarity=0.147 Sum_probs=198.1
Q ss_pred hHHHHHHHhcccceeeecc-------C--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGFN-------A--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~-------~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++.+. + +.+||+||.++ ++++|++|.+. +++||+|+++++|+++++++++||+++
T Consensus 38 ~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~-~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~a 115 (612)
T PRK12476 38 SLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVR-LRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIKA 115 (612)
T ss_pred HHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHH-HHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHHc
Confidence 4677788889997776542 1 37999999996 99999999986 999999999999999999999999999
Q ss_pred CCeEEec-CCCCC--HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCC--ccEEEEccCCCCCCCcccHHHHHHhcc
Q psy2835 74 GGFAAGM-YTTNS--PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK--LKAIVQYEGKPDKPGVISWDELMELGR 148 (305)
Q Consensus 74 G~~~v~i-~~~~~--~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~ 148 (305)
|++++|+ ++..+ .+++.++++++++++++++++. .+.+.+.....+. ...++.+++.. ....
T Consensus 116 G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~ 182 (612)
T PRK12476 116 GTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAA-AEAVEGFLRNLPRLRRPRVIAIDAIP------------DSAG 182 (612)
T ss_pred CceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHH-HHHHHHHHhhcccccCceEEEecccc------------cccc
Confidence 9999999 57766 7899999999999999998763 3444444333322 22344332211 0000
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-cCCCCceEEEeCchhHHHHHHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIY 227 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~g~~~~~~ 227 (305)
.... .....++++++|+|||||||.||||++||+++..++......++ + .+++++++++|++|..|+.. .+
T Consensus 183 ~~~~------~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~Pl~h~~g~~~-~~ 254 (612)
T PRK12476 183 ESFV------PVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLL-DRNTHGVSWLPLYHDMGLSM-IG 254 (612)
T ss_pred cccc------CCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccC-CCCceEEEeCCcccccchHH-HH
Confidence 0000 01235689999999999999999999999999988777666666 6 78899999999999999866 44
Q ss_pred HHHHhCcEEEEeCC-cc--chhHHHHHhh--hcCCcEEEechHHHHHHHHHHH----HhhcccChHHHHHHH
Q psy2835 228 SVMTVAATLWFADK-NA--LKGSLINTLL--EVRPHVFLAVPRVWEKIHEKLM----AVGKQTTGVKRWIAN 290 (305)
Q Consensus 228 ~~l~~G~~~v~~~~-~~--~~~~~~~~i~--~~~vt~~~~~P~~~~~l~~~~~----~~~~~~~sl~~~~~~ 290 (305)
.++..|+++++... .. +|..+++.++ ++++|++..+|+++..+++... ....+++++| ++++
T Consensus 255 ~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~g 325 (612)
T PRK12476 255 FPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIG 325 (612)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEec
Confidence 55555666655543 21 4789999995 5899999999999888876421 1234677887 5444
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=254.80 Aligned_cols=271 Identities=15% Similarity=0.137 Sum_probs=208.5
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.+.+.++++|+..++.++++.+||+|+.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 39 ~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~-~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~ 117 (516)
T PRK13383 39 TLLAVTAARWPGRTAIIDDDGALSYRELQRA-TESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPIST 117 (516)
T ss_pred HHHHHHHHHCCCCcEEEeCCCcEeHHHHHHH-HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCc
Confidence 3466778889998888778889999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.+++++++++.+++++.. .+.+..... .++.++.. ...... .... +.
T Consensus 118 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~------~~~~~~~~--------~~~~~~----~~~~-------p~ 171 (516)
T PRK13383 118 EFRSDALAAALRAHHISTVVADNEF-AERIAGADD------AVAVIDPA--------TAGAEE----SGGR-------PA 171 (516)
T ss_pred cCCHHHHHHHHhcCCCCEEEEchhH-HHHHHhhhc------ceEEeccc--------hhhhhc----CCCC-------CC
Confidence 9999999999999999999998763 333332211 12222111 000000 0000 11
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHH--HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITF--NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
..++.++|+|||||||.||+|.+||..... ........+++ ..+|+++..+|++|.+|+.. ++.++..|+++++..
T Consensus 172 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~~ 249 (516)
T PRK13383 172 VAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRL-RTGSRISVAMPMFHGLGLGM-LMLTIALGGTVLTHR 249 (516)
T ss_pred CCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhcc-CCCCeEEEecCCcchhhHHH-HHHHHhcCCEEEECC
Confidence 245678999999999999999999984322 12223345567 88999999999999999865 788899999999887
Q ss_pred CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
..+ +..+++.++++++|.+.++|+++..+.+..+. ...+++++|.++++ +.+.+|.++++.|
T Consensus 250 ~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~Y 324 (516)
T PRK13383 250 HFD-AEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGY 324 (516)
T ss_pred CCC-HHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcc
Confidence 765 68999999999999999999999999875432 12346677655433 3445777887766
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=282.58 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=207.0
Q ss_pred hHHHHHHHhcccceeeec---------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGF---------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~---------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++.+ .++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus 240 ~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~-~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~ 318 (1389)
T TIGR03443 240 DIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEA-SNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKA 318 (1389)
T ss_pred HHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 568889999999777753 4578999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHH--HHHHHHHhcc----CCCccEEEEccCCCCCCCcccH--HHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--LEKILKVKAQ----CPKLKAIVQYEGKPDKPGVISW--DELME 145 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~--~~l~~ 145 (305)
|++++|++|.++.+++.++++++++++++++.... ...+...... ......+...++.....+.... .+...
T Consensus 319 G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1389)
T TIGR03443 319 GATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETDVLA 398 (1389)
T ss_pred CcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccccccccccccccc
Confidence 99999999999999999999999999999875410 1111111110 0111111111110000000000 01100
Q ss_pred hccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHH
Q psy2835 146 LGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVD 225 (305)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~ 225 (305)
......... ......++++++|+|||||||.||||+++|+++.+.+......+++ .++|++++..|++|..+. ..
T Consensus 399 ~~~~~~~~~---~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~d~~~-~~ 473 (1389)
T TIGR03443 399 PYQALKDTP---TGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGL-SENDKFTMLSGIAHDPIQ-RD 473 (1389)
T ss_pred cccccccCC---CCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCC-CCCCEEEEecCceecchH-HH
Confidence 000000000 0012357899999999999999999999999999999888888888 999999999999997654 66
Q ss_pred HHHHHHhCcEEEEeCCcc--chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 226 IYSVMTVAATLWFADKNA--LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 226 ~~~~l~~G~~~v~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++.++..|+++++++... .+..+++.+++++||++.++|++++.|.... ..++++||.++++
T Consensus 474 i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~g 537 (1389)
T TIGR03443 474 MFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFV 537 (1389)
T ss_pred HHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEe
Confidence 999999999999987543 3678999999999999999999999886532 3457778766554
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=299.84 Aligned_cols=260 Identities=16% Similarity=0.184 Sum_probs=213.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++++||+||.++ ++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|++|
T Consensus 3099 ~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~ 3177 (3956)
T PRK12467 3099 QLIEAQVARTPEAPALVFGDQQLSYAELNRR-ANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDP 3177 (3956)
T ss_pred HHHHHHHHhCCCcceEeeCCcccCHHHHHHH-HHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCC
Confidence 5788899999999988899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... .+.+. .... ...+.++.. ..... ....+ ....
T Consensus 3178 ~~p~~rl~~il~~~~~~~vlt~~~~-~~~~~----~~~~-~~~~~~~~~------------~~~~~-~~~~~----~~~~ 3234 (3956)
T PRK12467 3178 EYPRERLAYMIEDSGVKLLLTQAHL-LEQLP----APAG-DTALTLDRL------------DLNGY-SENNP----STRV 3234 (3956)
T ss_pred CChHHHHHHHHhCCCCcEEEechhh-hhhcc----cccC-Cceeeecch------------hhccc-CCCCC----cccC
Confidence 9999999999999999999998652 12211 0111 111212111 00000 00000 1234
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+.+......+++ +++|++++..|++|..+ ++.++.+|..|+++++.+..
T Consensus 3235 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~l~i~~~~ 3312 (3956)
T PRK12467 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYEL-DANDRVLLFMSFSFDGA-QERFLWTLICGGCLVVRDND 3312 (3956)
T ss_pred CCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCC-CcCCEEEEecCccHhHH-HHHHHHHHhCCCEEEECCcc
Confidence 67999999999999999999999999999999998899999 99999999999999766 56699999999999999841
Q ss_pred -cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 -ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 -~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.++..+++.++++++|++.++|+++..+++.. ...++++||.++++
T Consensus 3313 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~~g 3359 (3956)
T PRK12467 3313 LWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYVFG 3359 (3956)
T ss_pred cCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEEEe
Confidence 34789999999999999999999999997643 23467788876665
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=250.73 Aligned_cols=271 Identities=17% Similarity=0.197 Sum_probs=210.0
Q ss_pred HHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC
Q psy2835 6 KLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83 (305)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~ 83 (305)
...++++|++.++.+ +++.+||+||.++ +++++.+|.+.|+++|++|+++++|+++++++++||+++|++++++++.
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~-~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 4 GIHAQTTPDKPAVIMASTGEVVTYRELDER-SNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhHhhCCCceEEEecCCCCEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 456788899777655 5678999999995 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccC
Q psy2835 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 163 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (305)
.+.+++.++++..+++.++++... ...+.++...++.....+...+.........+++.... .+... ...
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~ 152 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAK-LDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAG---LPATP------IAD 152 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhh-HHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcC---CCCCC------CCC
Confidence 999999999999999999999874 45555565555555555545432222333334443321 11111 123
Q ss_pred CCceeEEEeccCCCCCCcceEec--hhHHHHH---HHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLS--HDNITFN---AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s--~~~l~~~---~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++|||||||.||+|.++ |.++... .......+++ .+++++++..|++|..++.. .+.++..|+++++
T Consensus 153 ~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~ 230 (511)
T PRK13391 153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGF-RSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIV 230 (511)
T ss_pred cccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCC-CCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEE
Confidence 45678999999999999999964 6665432 2334455667 88899999999999988765 6788999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~ 290 (305)
.+... +..+++.++++++|++.++|+++..+.+.... ...+++++|.++.+
T Consensus 231 ~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~g 283 (511)
T PRK13391 231 MEHFD-AEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHA 283 (511)
T ss_pred CCCCC-HHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEc
Confidence 98765 79999999999999999999999988764322 23457777766543
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=252.23 Aligned_cols=293 Identities=19% Similarity=0.203 Sum_probs=215.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|.+|. +.|+++||+|+++++|+.++++++|||+++|++++|++
T Consensus 27 ~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~-~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 105 (560)
T PRK08974 27 DMFEQAVARYADQPAFINMGEVMTFRKLEER-SRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVN 105 (560)
T ss_pred HHHHHHHHhCCCCceEEECCccccHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccC
Confidence 5678888999998888788899999999995 999999998 48999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC------------------------CCc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK------------------------PGV 137 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~ 137 (305)
|..+.+++.++++..+++.++++.+. .+.+.++.... ....++........ +..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (560)
T PRK08974 106 PLYTPRELEHQLNDSGAKAIVIVSNF-AHTLEKVVFKT-PVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDA 183 (560)
T ss_pred ccCCHHHHHHHHHhcCceEEEEeccc-cHHHHHHhhhc-CcceEEEecccccccccccccccchhhhcccccccccCCCc
Confidence 99999999999999999999998763 24444333222 12222211100000 001
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc--cCCCCceEEEeCc
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK--LESAALSVISFLP 215 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~l~~~p 215 (305)
.++.+.......... .......+++++|+|||||||.||+|.++|.++..++......+. ....++.++..+|
T Consensus 184 ~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 258 (560)
T PRK08974 184 ISFRSALHKGRRMQY-----VKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALP 258 (560)
T ss_pred ccHHHHhhccCCCCC-----CCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCc
Confidence 111222111110000 001235789999999999999999999999999887655433332 1045678899999
Q ss_pred hhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----
Q psy2835 216 LSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----- 290 (305)
Q Consensus 216 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----- 290 (305)
++|.+++....+..+..|+++++......+..+++.++++++|++.++|++++.+.+.......+++++|.++.+
T Consensus 259 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~ 338 (560)
T PRK08974 259 LYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQ 338 (560)
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCC
Confidence 999999877778888899998877544446889999999999999999999999987654444556677655433
Q ss_pred ------HHHHhhhHHHhhh
Q psy2835 291 ------YAKSTSLQHYMAY 303 (305)
Q Consensus 291 ------~a~~~g~~~~~~~ 303 (305)
|....|+++++.|
T Consensus 339 ~~~~~~~~~~~g~~~~~~Y 357 (560)
T PRK08974 339 QAVAERWVKLTGQYLLEGY 357 (560)
T ss_pred HHHHHHHHHHhCCcEEeee
Confidence 3333566666655
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=298.08 Aligned_cols=263 Identities=16% Similarity=0.164 Sum_probs=213.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 1578 ~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp 1656 (3956)
T PRK12467 1578 QLIEDQAAATPEAVALVFGEQELTYGELNRR-ANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDP 1656 (3956)
T ss_pred HHHHHHHHhCCCCeEEEeCCcEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCC
Confidence 5788899999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... ...+ ....... ++.++... ++......... ....
T Consensus 1657 ~~p~~rl~~il~~~~~~~~l~~~~~-~~~~----~~~~~~~-~~~~~~~~---------~~~~~~~~~~~------~~~~ 1715 (3956)
T PRK12467 1657 EYPRERLAYMIEDSGIELLLTQSHL-QARL----PLPDGLR-SLVLDQED---------DWLEGYSDSNP------AVNL 1715 (3956)
T ss_pred CCCHHHHHHHHHhCCCCEEEeChhh-hhhC----ccccCCc-EEEecccc---------chhccCCCCCC------CCCC
Confidence 9999999999999999999998652 1111 1111111 22222110 11111100000 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+.+......+++ +.+|++++..|++|..+. +.++.++..|+++++.+..
T Consensus 1716 ~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~ 1793 (3956)
T PRK12467 1716 APQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQL-SAADVVLQFTSFAFDVSV-WELFWPLINGARLVIAPPG 1793 (3956)
T ss_pred CCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCC-CcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEcChh
Confidence 67899999999999999999999999999999988888899 999999999999997775 5699999999999998753
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.+|..+++.++++++|++.++|++++.|++.. ....++++||.++++
T Consensus 1794 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~-~~~~~~~~lr~v~~g 1842 (3956)
T PRK12467 1794 AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMD-EQVEHPLSLRRVVCG 1842 (3956)
T ss_pred hcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhc-cccccCCCceEEEEc
Confidence 23789999999999999999999999998752 223457788876655
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=300.91 Aligned_cols=264 Identities=14% Similarity=0.124 Sum_probs=212.8
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++++||+||.++ ++++|+.|.+.|+++|++|+++++++.+++++++|++++|++++|++|
T Consensus 3724 ~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~-~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~ 3802 (4334)
T PRK05691 3724 RLFEAQVAAHPQRIAASCLDQQWSYAELNRA-ANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDP 3802 (4334)
T ss_pred HHHHHHHHhCCCceEEEcCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCC
Confidence 5788899999999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCC--ccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK--LKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
.++.+.+.++++++++++++++... ......+...... ...++..++ .......... ...
T Consensus 3803 ~~p~~r~~~il~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-----~~~ 3864 (4334)
T PRK05691 3803 GLPAQRLQRIIELSRTPVLVCSAAC-REQARALLDELGCANRPRLLVWEE------------VQAGEVASHN-----PGI 3864 (4334)
T ss_pred CChHHHHHHHHHhcCCCEEEecCcc-cchhhhhhcccccccccceeeecc------------cccccccccC-----CCC
Confidence 9999999999999999999998763 2222222222211 111111111 1000000000 012
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
...++++++|+|||||||+||||+++|+++.+.+......+++ +++|+++...|++|..+ ++.++.++..|+++++++
T Consensus 3865 ~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~fd~s-~~~~~~~l~~G~~l~i~~ 3942 (4334)
T PRK05691 3865 YSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLAL-SEADVIAQTASQSFDIS-VWQFLAAPLFGARVEIVP 3942 (4334)
T ss_pred CCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCC-CccceEEEecCCchhHH-HHHHHHHHhCCCEEEEcC
Confidence 3467999999999999999999999999999999998889999 99999999999999665 577999999999999987
Q ss_pred Ccc--chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 241 KNA--LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 241 ~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
... +|..+++.++++++|++.++|+++..+++. ....+++||.++++
T Consensus 3943 ~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~---~~~~~~~lr~~~~g 3991 (4334)
T PRK05691 3943 NAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE---DRQALDGLRWMLPT 3991 (4334)
T ss_pred ccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh---ccccCCCceEEEec
Confidence 542 368899999999999999999999988754 22346677765543
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=250.27 Aligned_cols=261 Identities=17% Similarity=0.213 Sum_probs=211.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.+..+|+..++.+.++.+||+||.++ ++++|..|.+.|+++|++|+++++|+.++++++|||++.|++++|+++
T Consensus 6 ~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~-~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~ 84 (503)
T PRK04813 6 ETIEEFAQTQPDFPAYDYLGEKLTYGQLKED-SDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDV 84 (503)
T ss_pred HHHHHHHHhCCCceEEEeCCcEEeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCC
Confidence 6788889999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++..++++++++.+.. ...... ..+ .++++........... .....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~------------~~~~~~~~~~~~~~~~---~~~~~ 140 (503)
T PRK04813 85 SSPAERIEMIIEVAKPSLIIATEELP--------LEILGI-PVI------------TLDELKDIFATGNPYD---FDHAV 140 (503)
T ss_pred CChHHHHHHHHHhcCCCEEEeccccc--------ccccCC-cEE------------ehHHhhhhhhcccccc---ccccC
Confidence 99999999999999999999987631 000011 111 1222221110000000 00123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||+|.+||+++..........+++ ..++++++..|++|..+.. .++.++..|+++++.+..
T Consensus 141 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~v~~~~~ 218 (503)
T PRK04813 141 KGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFAL-PEGPQFLNQAPYSFDLSVM-DLYPTLASGGTLVALPKD 218 (503)
T ss_pred CCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCC-CcCceeeecCCcchhHhHH-HHHHHHhcCCEEEEcChh
Confidence 56889999999999999999999999999988887777888 8999999999999988864 488999999999988763
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..+..+++.++++++|++..+|++++.++........+++++|.++++
T Consensus 219 ~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~ 268 (503)
T PRK04813 219 MTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFC 268 (503)
T ss_pred hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEe
Confidence 236889999999999999999999998876655555667788766543
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=263.93 Aligned_cols=268 Identities=9% Similarity=0.070 Sum_probs=200.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.++++.+||+||.++ ++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|++|
T Consensus 451 ~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~r-a~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p 529 (994)
T PRK07868 451 RIIAEQARDAPKGEFLLFDGRVHTYEAVNRR-INNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPP 529 (994)
T ss_pred HHHHHHHHHCCCCeEEEeCCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 5788899999998888888899999999996 999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC----C---CcccHHHHHHhccCCCCchh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----P---GVISWDELMELGRAAPDESL 155 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~ 155 (305)
. +++.+++++++++++|++.+. .+.+.+. ...+++++..... . ....++++.... ......
T Consensus 530 ~---~~l~~il~~s~~~~li~~~~~-~~~~~~~------~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 597 (994)
T PRK07868 530 D---TDLAAAVRLGGVTEIITDPTN-LEAARQL------PGRVLVLGGGESRDLDLPDDADVIDMEKIDPDA--VELPGW 597 (994)
T ss_pred c---hhHHHHHhccCCeEEEEChHH-HHHHHhc------CceEEEecCCccccccCCcchhhhhhhhcCccc--ccCCcc
Confidence 5 689999999999999998663 3433221 1334444321100 0 001111110000 000000
Q ss_pred HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
. ......++++++|+|| ||||.||++.++|.+...........+++ .++|++++.+|++|.+|+...++..+..|++
T Consensus 598 ~-~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l-~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~ 674 (994)
T PRK07868 598 Y-RPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAAL-DRRDTVYCLTPLHHESGLLVSLGGAVVGGSR 674 (994)
T ss_pred c-CCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCC-CCCCeEEEecChHHHhHHHHHHHHHhccceE
Confidence 0 0011235899999999 68888888888887766555555556777 8999999999999999987656666666667
Q ss_pred EEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH
Q psy2835 236 LWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW 287 (305)
Q Consensus 236 ~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~ 287 (305)
+++.+.++ ++.+++.|++++||++.++|+++..|++.......++++||.+
T Consensus 675 vvl~~~~~-~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~ 725 (994)
T PRK07868 675 IALSRGLD-PDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLF 725 (994)
T ss_pred EEecCCCC-HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEE
Confidence 76766554 7999999999999999999999999987644444556677754
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=300.85 Aligned_cols=262 Identities=17% Similarity=0.208 Sum_probs=215.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 4555 ~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~-~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lavl~aG~~~vpldp 4633 (5163)
T PRK12316 4555 QLVAERARMTPDAVAVVFDEEKLTYAELNRR-ANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDP 4633 (5163)
T ss_pred HHHHHHHHhCCCCeEEEeCCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEecCCC
Confidence 5788899999999999889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... ...+ ....... .+.++.. .++ .... ... .....
T Consensus 4634 ~~p~~rl~~il~~~~~~~vl~~~~~-~~~~----~~~~~~~-~~~~~~~---------~~~-~~~~--~~~----~~~~~ 4691 (5163)
T PRK12316 4634 EYPRERLAYMMEDSGAALLLTQSHL-LQRL----PIPDGLA-SLALDRD---------EDW-EGFP--AHD----PAVRL 4691 (5163)
T ss_pred CChHHHHHHHHHhcCCCEEEechhh-hhhc----ccccCcc-eEeecch---------hhc-ccCC--ccC----CccCC
Confidence 9999999999999999999998652 1221 1111111 1111110 000 0000 000 01234
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+.+......+++ +++|++++..|++|..+. +.++.++..|+++++.+..
T Consensus 4692 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~ 4769 (5163)
T PRK12316 4692 HPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYEL-TPDDRVLQFMSFSFDGSH-EGLYHPLINGASVVIRDDS 4769 (5163)
T ss_pred CCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCC-CcCCeEEEecCcchhhHH-HHHHHHHhCCCEEEEcCcc
Confidence 67999999999999999999999999999999998888999 999999999999997765 6699999999999998764
Q ss_pred c-chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 A-LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 ~-~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
. ++..+++.+++++||++.++|++++.|.+...... ++++||.++++
T Consensus 4770 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-~~~~lr~v~~g 4817 (5163)
T PRK12316 4770 LWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYCFG 4817 (5163)
T ss_pred cCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhcccc-CCCCccEEEEe
Confidence 4 57999999999999999999999999987654332 67888877665
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=253.67 Aligned_cols=267 Identities=15% Similarity=0.124 Sum_probs=203.7
Q ss_pred hhHHHHHHHhcccceeeeccC---CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 2 KAFLKLGLERYHSVCIIGFNA---PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~---~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
.++|+..++++|+..+++..+ +.+||+||.++ +.++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~-~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v 102 (579)
T PRK09192 24 VEALDYAALGEAGMNFYDRRGQLEEALPYQTLRAR-AEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPV 102 (579)
T ss_pred HHHHHHhhccCCceEEEecCCCEEEEecHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeE
Confidence 467888888888888775433 56999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCCCCC-------HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 79 GMYTTNS-------PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 79 ~i~~~~~-------~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
|+++..+ .+++.++++.++++++++++.. .+.+.+...... . .. ..+++++........
T Consensus 103 ~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~-~~~~~~~~~~~~-~--~~----------~~~~~~~~~~~~~~~ 168 (579)
T PRK09192 103 PLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDEL-LPWVNEATHGNP-L--LH----------VLSHAWFKALPEADV 168 (579)
T ss_pred eccCCcccccchHHHHHHHHHHHhcCCCEEEeChHH-HHHHHHhhcccc-c--cc----------eeehhhhcccCCCcc
Confidence 9987543 6899999999999999998763 344443321111 1 11 112333322111100
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH-hhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.. ....++++++|+|||||||.||+|.+||+++..+...... .+++ .++|++++++|++|.+|+...++.++
T Consensus 169 ~~------~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l 241 (579)
T PRK09192 169 AL------PRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKV-RPGDRCVSWLPFYHDMGLVGFLLTPV 241 (579)
T ss_pred cc------CCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccC-CCCCeEEEeCCCCCcchhHHHHHHHH
Confidence 00 1235689999999999999999999999999998877766 6788 89999999999999999887778889
Q ss_pred HhCcEEEEeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHHHHHH---HhhcccChHHHHHHH
Q psy2835 231 TVAATLWFADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM---AVGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~~~sl~~~~~~ 290 (305)
..|+++++.+... .|..+++.+.++++|+++..|..+..+..... ....+++++|.++.+
T Consensus 242 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~g 307 (579)
T PRK09192 242 ATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIG 307 (579)
T ss_pred HhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEec
Confidence 9999998776321 26889999999999987776666666554322 123467777766554
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=299.23 Aligned_cols=262 Identities=16% Similarity=0.160 Sum_probs=214.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.++++++||+||.++ ++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 515 ~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~-~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~ 593 (5163)
T PRK12316 515 RLFEEQVERTPEAPALAFGEETLDYAELNRR-ANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDP 593 (5163)
T ss_pred HHHHHHHHHCCCCeEEEeCCceEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCc
Confidence 6788999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... ...+ ...... .++.++... ........... ....
T Consensus 594 ~~p~~rl~~il~~~~~~~~l~~~~~-~~~~----~~~~~~-~~~~~~~~~---------~~~~~~~~~~~------~~~~ 652 (5163)
T PRK12316 594 EYPAERLAYMLEDSGVQLLLSQSHL-GRKL----PLAAGV-QVLDLDRPA---------AWLEGYSEENP------GTEL 652 (5163)
T ss_pred cCcHHHHHHHHHhCCCCEEEEChhh-hhhC----CcccCc-eEEEecCcc---------hhhccCCCCCC------CCCC
Confidence 9999999999999999999998753 1111 111111 222222110 00111100000 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK- 241 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~- 241 (305)
.++++++|+|||||||.||||+++|+++.+.+......+++ +.+|++++..|++|..+. +.++.++..|+++++.+.
T Consensus 653 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~i~~~~ 730 (5163)
T PRK12316 653 NPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGL-GVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVVAAPG 730 (5163)
T ss_pred CCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCC-CCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEEECCcc
Confidence 67899999999999999999999999999999998899999 999999999999998886 559999999999999864
Q ss_pred -ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 242 -NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 242 -~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..++..+++.+++++||++.++|++++.|++.. ...+++++|.++++
T Consensus 731 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~--~~~~~~~l~~~~~g 778 (5163)
T PRK12316 731 DHRDPAKLVELINREGVDTLHFVPSMLQAFLQDE--DVASCTSLRRIVCS 778 (5163)
T ss_pred ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc--ccccCCCccEEEEe
Confidence 233789999999999999999999999998643 23457788876665
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=251.05 Aligned_cols=259 Identities=17% Similarity=0.139 Sum_probs=192.2
Q ss_pred hHHHHHHHhcccceeeeccC----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIGFNA----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
+.|+..++++|+..++.+.+ +++||+||.++ ++++|+.|.++ ++||+|+++++|+++++++++||+++|++++
T Consensus 6 ~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~-~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~ 82 (525)
T PRK05851 6 AALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGR-AENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS 82 (525)
T ss_pred HHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHH-HHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc
Confidence 46788888999977776665 68999999996 99999999988 7999999999999999999999999999865
Q ss_pred ecCC-------CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 79 GMYT-------TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 79 ~i~~-------~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
+++. ....+++.+++++++++++++++.. ...+.+.... +.+.+ +... .....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~-------~~~~~---------~~~~---~~~~~ 142 (525)
T PRK05851 83 ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSH-LERLRAVDSS-------VTVHD---------LATA---AHTNR 142 (525)
T ss_pred CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHH-HHHHHHhhcc-------ccccc---------cccc---ccccc
Confidence 4431 1233556678899999999998763 2333322111 00100 0000 00000
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCC-CCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES-AALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.... ....++++++|+|||||||.||||++||+++..++......+++ . ++|++++.+|++|.+|+.. ++.++
T Consensus 143 ~~~~----~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~h~~g~~~-~~~~l 216 (525)
T PRK05851 143 SASL----TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGL-DAATDVGCSWLPLYHDMGLAF-LLTAA 216 (525)
T ss_pred cccC----CCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCC-CCCCCeEEEcCCCccCccHHH-HHHHH
Confidence 0000 12356899999999999999999999999999998888888888 8 8999999999999999864 88999
Q ss_pred HhCcEEEEeCC--cc-chhHHHHHhhhcCCcEEEechHHHHHHHHHHH-HhhcccChHHHHHHH
Q psy2835 231 TVAATLWFADK--NA-LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM-AVGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~--~~-~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~~sl~~~~~~ 290 (305)
..|+++++.+. +. .|..+++.++++++|++..+|.++..+.+... ....++++||.++++
T Consensus 217 ~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~g 280 (525)
T PRK05851 217 LAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNG 280 (525)
T ss_pred HcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEec
Confidence 99999999873 21 36789999999999987555555555443322 234457888877665
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=246.48 Aligned_cols=253 Identities=17% Similarity=0.192 Sum_probs=201.2
Q ss_pred HHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC
Q psy2835 5 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 84 (305)
Q Consensus 5 l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~ 84 (305)
.+..++++|+..++.++++.+||+||.++ ++++|+.|.+.|+.+||+|+++++|+++++++++||+++|++++|+++..
T Consensus 9 ~~~~a~~~~~~~a~~~~~~~~ty~el~~~-~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 87 (458)
T PRK09029 9 WRHWAQVRPQAIALRLNDEVLTWQQLCAR-IDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQL 87 (458)
T ss_pred HHHHHHhCCCceeeecCCcceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCC
Confidence 35567889998888888999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCC
Q psy2835 85 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 164 (305)
Q Consensus 85 ~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 164 (305)
+.+++..++++.++++++++++.. ....+ .... .. ....... ....+
T Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-------~~~~-------------~~----~~~~~~~-------~~~~~ 134 (458)
T PRK09029 88 PQPLLEELLPSLTLDFALVLEGEN--TFSAL-------TSLH-------------LQ----LVEGAHA-------VAWQP 134 (458)
T ss_pred CHHHHHHHHHhcCCCEEEEcCccc--chhhc-------cccc-------------cc----cccccCc-------ccCCC
Confidence 999999999999999999987631 11100 0000 00 0000000 12357
Q ss_pred CceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccc
Q psy2835 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL 244 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~ 244 (305)
+++++++|||||||.||+|.+||+++...+......+++ .++|+++..+|++|.+|+.. ++.++..|+++++.+.
T Consensus 135 ~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~~--- 209 (458)
T PRK09029 135 QRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPF-TAQDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRDK--- 209 (458)
T ss_pred CCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCC-CccceEEEecCcHhhhhhHH-HHHHHhCCceEEeCCh---
Confidence 899999999999999999999999999998888888888 89999999999999999854 7788999999998875
Q ss_pred hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 245 KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 245 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
..+++.+ +++|.+..+|+++..+++.... ..++|.++++ +..+.|+++++.|
T Consensus 210 -~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~Y 271 (458)
T PRK09029 210 -QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGY 271 (458)
T ss_pred -HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHcCCcEeccc
Confidence 3456666 3799999999999988875432 2345544332 3344577777665
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=252.92 Aligned_cols=266 Identities=18% Similarity=0.191 Sum_probs=195.7
Q ss_pred hhHHHHHHHhcccceeeecc---------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHH
Q psy2835 2 KAFLKLGLERYHSVCIIGFN---------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIY 72 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~---------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~ 72 (305)
.++|++.+..+|+..++.+. .+++||+||..+ +.++|++|.+.| .+||+|+++++|+++++++++||++
T Consensus 4 ~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~-v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~ 81 (578)
T PRK05850 4 PSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRR-TLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQ 81 (578)
T ss_pred HHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHH-HHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHH
Confidence 36788889999997776542 268999999996 999999999999 6899999999999999999999999
Q ss_pred cCCeEEecCC---CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC--CccEEEEccCCCCCCCcccHHHHHHhc
Q psy2835 73 AGGFAAGMYT---TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP--KLKAIVQYEGKPDKPGVISWDELMELG 147 (305)
Q Consensus 73 ~G~~~v~i~~---~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~ 147 (305)
+|++++|+++ ..+.+++.++++++++++++++++. .+.+.+...... ....++.++.. ++. .
T Consensus 82 ~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--~ 148 (578)
T PRK05850 82 AGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAV-VDDVTEYVAPQPGQSAPPVIEVDLL----------DLD--S 148 (578)
T ss_pred cCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHH-HHHHHHHHhhcccccccceEeeccc----------ccc--c
Confidence 9999999997 5578999999999999999998763 344433221111 11112211110 000 0
Q ss_pred cCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-c-----cCCCCceEEEeCchhHHHH
Q psy2835 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-K-----LESAALSVISFLPLSHIAA 221 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~~~~~l~~~pl~~~~g 221 (305)
..... ......+++++|+|||||||.||||++||+++..++......+ . . ..++++++++|++|..|
T Consensus 149 ~~~~~------~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g 221 (578)
T PRK05850 149 PRGSD------ARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVP-PPDTTVVSWLPFYHDMG 221 (578)
T ss_pred CCccc------cCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCC-CCcceEEEECCCCCCch
Confidence 00000 0123568999999999999999999999999998776654432 2 2 45789999999999999
Q ss_pred HHHHHHHHHHhCcEEEEeCCcc---chhHHHHHhhhcCCcEEEechHH-HHHHHHHH---HHhhcccChHHHHHHH
Q psy2835 222 QTVDIYSVMTVAATLWFADKNA---LKGSLINTLLEVRPHVFLAVPRV-WEKIHEKL---MAVGKQTTGVKRWIAN 290 (305)
Q Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~-~~~l~~~~---~~~~~~~~sl~~~~~~ 290 (305)
++..++.++..|+++++.+... .|..+++.+++++++++ .+|.. +..+.... .....+++++|.++.+
T Consensus 222 ~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~g 296 (578)
T PRK05850 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISG 296 (578)
T ss_pred hHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEEC
Confidence 9888999999999999987532 37899999999999865 55554 44443321 1123456677654433
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=244.25 Aligned_cols=272 Identities=18% Similarity=0.160 Sum_probs=207.0
Q ss_pred eeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhh
Q psy2835 16 CIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVT 95 (305)
Q Consensus 16 ~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~ 95 (305)
.++.+.++.+||+||.++ +++++++|.+.|+++||+|+++++|+.+++++++||+++|++++|+++..+.+++.+++++
T Consensus 3 ~~~~~~~~~~ty~el~~~-v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~ 81 (502)
T PRK08276 3 VIMAPSGEVVTYGELEAR-SNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD 81 (502)
T ss_pred eEecCCCcEEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence 455678899999999995 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeChHHHHHHHHHhccCC-CccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEecc
Q psy2835 96 SDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTS 174 (305)
Q Consensus 96 ~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 174 (305)
++++++++++.. .+.+.+.....+ ....++..... ......+++...... .. .....+++++++|||
T Consensus 82 ~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~------~~~~~~~~a~i~~TS 149 (502)
T PRK08276 82 SGAKVLIVSAAL-ADTAAELAAELPAGVPLLLVVAGP--VPGFRSYEEALAAQP---DT------PIADETAGADMLYSS 149 (502)
T ss_pred CCCCEEEEccch-hhHHHHHhhhccccccEEEEeCCC--CCccccHHHHHhcCC---CC------CCCCCCcceEEEECC
Confidence 999999998764 344444444443 34444433221 122334554433211 10 123557789999999
Q ss_pred CCCCCCcceEechhHHHHHH------HHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHH
Q psy2835 175 GTEGASKPVMLSHDNITFNA------ACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSL 248 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~------~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 248 (305)
||||.||+|+++|.++.... ......... ..++++++..|++|..++.. .+.++..|+++++.+... +..+
T Consensus 150 GtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~-~~~~ 226 (502)
T PRK08276 150 GTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYG-GPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFD-AEEA 226 (502)
T ss_pred CCCCCCceEEEccCCcchhhhhHHhhhhhhhcccC-CCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCC-HHHH
Confidence 99999999999988765432 111222223 46789999999999998866 567999999999888765 7999
Q ss_pred HHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHHH-----------HHHhhhHHHhhh
Q psy2835 249 INTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIANY-----------AKSTSLQHYMAY 303 (305)
Q Consensus 249 ~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~~-----------a~~~g~~~~~~~ 303 (305)
++.++++++|++.++|+++..+++.... ...+++++|.+++++ ...+|..+++.|
T Consensus 227 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~y 294 (502)
T PRK08276 227 LALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYY 294 (502)
T ss_pred HHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhc
Confidence 9999999999999999999999876532 244677887665542 223566666665
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=246.09 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=199.9
Q ss_pred HhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH
Q psy2835 10 ERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 89 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~ 89 (305)
+..++..++.++++++||+||.++ ++++|..|. ++|+|+++++|+++++++++||+++|++++|+++..+.+++
T Consensus 11 ~~~~~~~a~~~~~~~~Ty~el~~~-~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l 84 (471)
T PRK07787 11 AAADIADAVRIGGRVLSRSDLAGA-ATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAER 84 (471)
T ss_pred cccCCceEEEeCCcEEEHHHHHHH-HHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHH
Confidence 344556777788999999999996 999999886 47999999999999999999999999999999999999999
Q ss_pred HHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeE
Q psy2835 90 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCT 169 (305)
Q Consensus 90 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (305)
.++++++++++++++.+.. ....+...... . ...+ ... ....++++++
T Consensus 85 ~~~l~~~~~~~il~~~~~~-------~~~~~~~~~~~--~-------~~~~----------~~~------~~~~~~~~a~ 132 (471)
T PRK07787 85 RHILADSGAQAWLGPAPDD-------PAGLPHVPVRL--H-------ARSW----------HRY------PEPDPDAPAL 132 (471)
T ss_pred HHHHHhcCCCEEEecCCcc-------cccccceeeec--c-------cccc----------ccC------CCCCCCceEE
Confidence 9999999999999976410 00111110000 0 0000 000 1235689999
Q ss_pred EEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHH
Q psy2835 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLI 249 (305)
Q Consensus 170 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 249 (305)
++|||||||.||+|.+||+++..++......+++ ..+|++++.+|++|.+|+...++.++..|+++++.+... +..++
T Consensus 133 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~ 210 (471)
T PRK07787 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQW-TADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPT-PEAYA 210 (471)
T ss_pred EEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCC-CccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCC-HHHHH
Confidence 9999999999999999999999998888888888 899999999999999999888999999999999987765 79999
Q ss_pred HHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 250 NTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 250 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.++ +++|++.++|+++..+.+.... ..+++++|.++.+ +...+|.++++.|
T Consensus 211 ~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~Y 273 (471)
T PRK07787 211 QALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERY 273 (471)
T ss_pred HHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcCCCeeccc
Confidence 9999 9999999999999999874322 2345666644322 3334666666655
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=243.56 Aligned_cols=264 Identities=16% Similarity=0.155 Sum_probs=194.7
Q ss_pred HHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC
Q psy2835 7 LGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 84 (305)
Q Consensus 7 ~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~ 84 (305)
..++++|+..++.+ +++.+||+||.++ ++++|+.|.++|+++||+|+++++|+++++++++||+++|++++|+++.+
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~-~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~ 83 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDD-SAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL 83 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCC
Confidence 45677888777654 3678999999995 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCC
Q psy2835 85 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 164 (305)
Q Consensus 85 ~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 164 (305)
+.+++.+++++.+++++++++.. .....+.... ....+.+.... .....+++...... +. ....
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~--~~--------~~~~ 147 (501)
T PRK13390 84 TAPEADYIVGDSGARVLVASAAL-DGLAAKVGAD---LPLRLSFGGEI--DGFGSFEAALAGAG--PR--------LTEQ 147 (501)
T ss_pred CHHHHHHHHHhcCCcEEEEcchh-hhHHHHhhhc---cceEEEecCcc--cccccHHHHhcccC--CC--------CCCC
Confidence 99999999999999999998652 1222222111 11122222110 12223333322110 00 1122
Q ss_pred CceeEEEeccCCCCCCcceEe--chhHHHHHHH----HHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 165 NECCTLVYTSGTEGASKPVML--SHDNITFNAA----CIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~--s~~~l~~~~~----~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
+++++|+|||||||.||+|.+ +|.++..... .....+.+ ..+|+++...|++|..++.+ ....+..|+++++
T Consensus 148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~ 225 (501)
T PRK13390 148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDI-SESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVL 225 (501)
T ss_pred cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCC-CCCCeEEecccchhhhHHHH-HHHHHhcCceEEE
Confidence 357999999999999999996 4555544221 12234567 88999999999999988765 3456678999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~ 290 (305)
.+... +..+++.++++++|++.++|+++..+++.... ...+++++|.++.+
T Consensus 226 ~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~ 278 (501)
T PRK13390 226 AKRFD-AQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHA 278 (501)
T ss_pred cCCcC-HHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEc
Confidence 87665 79999999999999999999999998864322 23456788876554
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=236.00 Aligned_cols=207 Identities=14% Similarity=0.077 Sum_probs=183.4
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCC
Q psy2835 18 IGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97 (305)
Q Consensus 18 ~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~ 97 (305)
+.++++++||+||.++ ++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++++
T Consensus 2 ~~~~~~~~ty~el~~~-~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 2 LIVNDEEYSKSDFDLR-LQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred eEecCceecHHHHHHH-HHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 4567889999999996 999999885 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCC
Q psy2835 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 177 (305)
Q Consensus 98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 177 (305)
++.+++++... .. .. . ....++++++++||||||
T Consensus 80 ~~~~i~~~~~~----------------~~--~~-------------------~---------~~~~~~~~~~i~~TSGtT 113 (414)
T PRK08308 80 CHGLLYGESDF----------------TK--LE-------------------A---------VNYLAEEPSLLQYSSGTT 113 (414)
T ss_pred CCEEEecCccc----------------cc--cc-------------------C---------CCCCCCCceEEEECCCCC
Confidence 99999976310 00 00 0 012468899999999999
Q ss_pred CCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCC
Q psy2835 178 GASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRP 257 (305)
Q Consensus 178 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~v 257 (305)
|.||+|.+||+++..++......+++ ..+|+.+..+|++|.+|+...++.++..|+++++.+..+ +..+++.++++++
T Consensus 114 G~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~l~~~~~ 191 (414)
T PRK08308 114 GEPKLIRRSWTEIDREIEAYNEALNC-EQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKN-PKFALNILRNTPQ 191 (414)
T ss_pred CCCcEEEEehHhHHHHHHHHHHhhCC-CcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCC-HHHHHHHHHHhCC
Confidence 99999999999999988888888888 889999999999999999888999999999999998766 7899999999999
Q ss_pred cEEEechHHHHHHHHHH
Q psy2835 258 HVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 258 t~~~~~P~~~~~l~~~~ 274 (305)
|++.++|.++..+.+..
T Consensus 192 t~~~~~P~~~~~l~~~~ 208 (414)
T PRK08308 192 HILYAVPLMLHILGRLL 208 (414)
T ss_pred eEEEcCHHHHHHHHhcC
Confidence 99999999999998753
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=244.32 Aligned_cols=262 Identities=13% Similarity=0.087 Sum_probs=201.4
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+.+...+...|+..++.. .++.+||.||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~-v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l 84 (545)
T PRK07768 6 EKMYANARTSPRGMVTGEPDAPVRHTWGEVHER-ARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTML 84 (545)
T ss_pred HHHHHHhhCCCcceEEecCCCceEecHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccccc
Confidence 456677778887655533 4468999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHH-------HHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCc
Q psy2835 81 YTTNSPEAC-------LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDE 153 (305)
Q Consensus 81 ~~~~~~~~~-------~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 153 (305)
++..+.+++ .++++.++++.+++++... .....+... . ....+++++...... .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~-------------~~~~~~~~l~~~~~~---~ 145 (545)
T PRK07768 85 HQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFL-AAAPVLEEK--G-------------IRVLTVADLLAADPI---D 145 (545)
T ss_pred CCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhh-hhhhhhccc--C-------------CceeehhhhcccCCC---C
Confidence 988776544 5567888999999987631 222111100 0 112334454432111 0
Q ss_pred hhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCC-ceEEEeCchhHHHHHHHHHHHHHHh
Q psy2835 154 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA-LSVISFLPLSHIAAQTVDIYSVMTV 232 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~-~~~l~~~pl~~~~g~~~~~~~~l~~ 232 (305)
.....++++++|+|||||||.||+|++||+++..+.......+++ ..+ |++++.+|++|..|+...++.++..
T Consensus 146 -----~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 219 (545)
T PRK07768 146 -----PVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEF-DVETDVMVSWLPLFHDMGMVGFLTVPMYF 219 (545)
T ss_pred -----cCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCC-CCCCceeEEeCCCccchHHHHHHHHHHHC
Confidence 013457999999999999999999999999999988877777787 665 8999999999999988777889999
Q ss_pred CcEEEEeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHHHHHHH----hhcccChHHHHHHH
Q psy2835 233 AATLWFADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA----VGKQTTGVKRWIAN 290 (305)
Q Consensus 233 G~~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~~~sl~~~~~~ 290 (305)
|+++++.+... .|..+.+.++++++|++..+|..+..+.+.... ...+++++|.++++
T Consensus 220 g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~ 284 (545)
T PRK07768 220 GAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNG 284 (545)
T ss_pred CceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEec
Confidence 99999886532 367889999999999998888888777654322 13567788766554
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=288.79 Aligned_cols=264 Identities=17% Similarity=0.169 Sum_probs=211.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++++||+||.++ ++++|++|.+.|+++|++|+++++|+.+++++++|++++|++++|++|
T Consensus 2192 ~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~-~~~lA~~L~~~Gv~~g~~V~l~~~~s~~~vv~~lailkaG~~~vpld~ 2270 (4334)
T PRK05691 2192 GLFAAQAARTPQAPALTFAGQTLSYAELDAR-ANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDP 2270 (4334)
T ss_pred HHHHHHHHHCCCCeEEEeCCeEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEeecCCC
Confidence 5788899999999898899999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... .+.+.+.. .....+. .... ...+ ......... ...
T Consensus 2271 ~~p~~rl~~il~~~~~~~~l~~~~~-~~~~~~~~---~~~~~~~-~~~~--------~~~~-~~~~~~~~~------~~~ 2330 (4334)
T PRK05691 2271 EYPLERLHYMIEDSGIGLLLSDRAL-FEALGELP---AGVARWC-LEDD--------AAAL-AAYSDAPLP------FLS 2330 (4334)
T ss_pred CChHHHHHHHHHhcCCCEEEeChhh-hhhhcccc---ccceeEE-eccc--------hhhh-hcCCCCCCC------CCC
Confidence 9999999999999999999998763 23222211 1111111 1110 0000 000000000 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+.+......+++ +++|++++..|++|..+. ..++.++..|+++++.+..
T Consensus 2331 ~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~i~~~L~~G~~lvl~~~~ 2408 (4334)
T PRK05691 2331 LPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGM-RADDCELHFYSINFDAAS-ERLLVPLLCGARVVLRAQG 2408 (4334)
T ss_pred CCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCC-CcccEEEEecCccHHHHH-HHHHHHHhCCCEEEECCcc
Confidence 56899999999999999999999999999999888888999 999999999999997665 6699999999999997642
Q ss_pred -cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 -ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 -~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..+..+.+.++++++|++.++|++++.|.+..... ....++|.++++
T Consensus 2409 ~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~~-~~~~~lr~i~~g 2456 (4334)
T PRK05691 2409 QWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAGQ-GEQLPVRMCITG 2456 (4334)
T ss_pred cCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhcc-ccCCCceEEEEc
Confidence 23689999999999999999999999998765332 345667766544
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-31 Score=239.71 Aligned_cols=257 Identities=17% Similarity=0.193 Sum_probs=194.5
Q ss_pred eeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC
Q psy2835 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS 96 (305)
Q Consensus 17 ~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~ 96 (305)
++..+++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.+
T Consensus 4 ~~~~~~~~~Ty~el~~~-~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 4 TIISGDRRRSFDELAQR-AARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred EEEECCeeecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 34457889999999995 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC--------------CCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 97 DANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--------------DKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 97 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
+++.++++... .+.+.+.. +.....+...... .......++++..... .. ...
T Consensus 83 ~~~~i~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~ 149 (509)
T PRK12406 83 GARVLIAHADL-LHGLASAL---PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PY------DGP 149 (509)
T ss_pred CCcEEEEccch-hhhhhhhh---hcccceeecccccccccccccccccccCCCCccCHHHHhcccC---cc------CCC
Confidence 99999998763 33332221 1111111111100 0012233444432111 00 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHH---HHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNI---TFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
..+++++++|||||||.||+|.++|... ..........+++ .+++++++..|++|..+..+ .+.++..|+++++.
T Consensus 150 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~ 227 (509)
T PRK12406 150 PVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGL-KPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQ 227 (509)
T ss_pred CCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCC-CCCceEEEEeCCcccchHHH-HHHHHhhheEEEEc
Confidence 5689999999999999999999876654 3333344556777 88999999999999888766 45678899999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~ 290 (305)
+... +..+++.++++++|++.++|+++..+++.... ...+++++|.++.+
T Consensus 228 ~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~g 279 (509)
T PRK12406 228 PRFD-PEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHA 279 (509)
T ss_pred cCCC-HHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEc
Confidence 7655 79999999999999999999999999875432 34467788776544
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=234.36 Aligned_cols=238 Identities=18% Similarity=0.196 Sum_probs=191.2
Q ss_pred chHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 26 FYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 26 Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
||+||.++ ++++++.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++..+.+++.++++..++++++++
T Consensus 1 t~~~l~~~-~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~ 79 (408)
T TIGR01733 1 TYRELDER-ANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTD 79 (408)
T ss_pred CHHHHHHH-HHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 79999995 9999999998 899999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceE
Q psy2835 105 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVM 184 (305)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~ 184 (305)
... ...+.... ...+..... +...... ....... ......+++++++|||||||.||+|.
T Consensus 80 ~~~-~~~~~~~~------~~~~~~~~~--------~~~~~~~---~~~~~~~--~~~~~~~~~~~i~~TSGTtG~pK~v~ 139 (408)
T TIGR01733 80 SAL-ASRLAGLV------LPIILVDPL--------ELAALDD---APAPPPP--DAPSGPDDLAYVIYTSGSTGRPKGVV 139 (408)
T ss_pred Cch-hhhccccC------CceEEechh--------hhhhccc---ccccccc--cCCCCCCCcEEEEEcCCCCCCCCEEE
Confidence 763 22222111 011111100 0000000 0000000 01135789999999999999999999
Q ss_pred echhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccc--hhHHHHHhhhcCCcEEEe
Q psy2835 185 LSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL--KGSLINTLLEVRPHVFLA 262 (305)
Q Consensus 185 ~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~--~~~~~~~i~~~~vt~~~~ 262 (305)
+||+++..+.......+.+ .++|++++..|++|.+++. .++.++..|+++++.+.... +..+.+.++++++|.+.+
T Consensus 140 ~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~ 217 (408)
T TIGR01733 140 VTHRSLVNLLAWLARRYGL-DPDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNL 217 (408)
T ss_pred eccHHHHHHHHHHHHhcCC-CCCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEe
Confidence 9999999999888888888 8999999999999998864 58999999999999887664 678999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 263 VPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 263 ~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
+|.+++.+.+... .++++||.++.
T Consensus 218 ~p~~~~~l~~~~~---~~~~~l~~v~~ 241 (408)
T TIGR01733 218 TPSLLALLAAALP---PALASLRLVIL 241 (408)
T ss_pred CHHHHHHHHHhhh---hcccCceEEEE
Confidence 9999999998765 45777776553
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=234.35 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=180.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
-+.|+||.++ +.++|+.|.+.|+ .+|++|+++++|+++++++++||+++|++++|++|.++.+++.++++++++++++
T Consensus 19 ~~~~~el~~~-~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i 97 (452)
T PRK07445 19 GYNSQRFYQL-AQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW 97 (452)
T ss_pred ecChHHHHHH-HHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence 4789999996 9999999999998 5799999999999999999999999999999999999999999999999999999
Q ss_pred EeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcc
Q psy2835 103 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 182 (305)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~ 182 (305)
++++.. .. . ... . .... ....++++++++|||||||.||+
T Consensus 98 ~~~~~~-~~-------~--------~~~----~--------------~~~~------~~~~~~~~~~i~~TSGTTG~PKg 137 (452)
T PRK07445 98 GLDQLK-LS-------H--------PPP----L--------------PSQG------ILPNLETGWIMIPTGGSSGQIRF 137 (452)
T ss_pred ecCccc-cc-------c--------CCC----C--------------Cccc------cCCCCCCcEEEEeCCCCCCCCcE
Confidence 876521 00 0 000 0 0000 01246899999999999999999
Q ss_pred eEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEe
Q psy2835 183 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLA 262 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~ 262 (305)
|++||+++..++......+++ .+ ++.++.+|++|.+|+.. ++.++..|+++++.+.... ........++++|++.+
T Consensus 138 V~~t~~~l~~~~~~~~~~~~~-~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~-~~~~~~~~~~~~t~~~~ 213 (452)
T PRK07445 138 AIHTWETLTASVQGFQRYFQL-QQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGKLVILPYKRL-KSGQELPPNPSDFFLSL 213 (452)
T ss_pred EEechHHHHHHHHHHHHHhcC-CC-CceEeccCchhhhhHHH-HHHHHHcCCeEEEcChHhc-cchhhhhhhcCceEEEe
Confidence 999999999888877777766 54 46889999999999854 8899999999999874321 22234445789999999
Q ss_pred chHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 263 VPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 263 ~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
+|++++.+++.. ..++++||.++++ ...+.|+++++.|
T Consensus 214 vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~Y 261 (452)
T PRK07445 214 VPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTY 261 (452)
T ss_pred hHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhcCCeEecCc
Confidence 999999988632 2345666644433 2233456666554
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=236.31 Aligned_cols=240 Identities=22% Similarity=0.246 Sum_probs=190.8
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 26 FYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 26 Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
||+|+.++ ++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++.+++++
T Consensus 1 Ty~~l~~~-~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (436)
T TIGR01923 1 TWQDLDCE-AAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS 79 (436)
T ss_pred CHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcC
Confidence 89999996 99999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEe
Q psy2835 106 DKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVML 185 (305)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 185 (305)
... .. . +. ...+.++......... .......+++++++|||||||.||+|++
T Consensus 80 ~~~-~~----------~--~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~TSGtTG~PK~v~~ 131 (436)
T TIGR01923 80 LLE-EK----------D--FQ----------ADSLDRIEAAGRYETS-----LSASFNMDQIATLMFTSGTTGKPKAVPH 131 (436)
T ss_pred ccc-cc----------c--ee----------ecchHhhhhccccccc-----ccccCCcCceEEEEeCCCCCCCCcEEEE
Confidence 621 00 0 00 0011111111110000 0013356889999999999999999999
Q ss_pred chhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 186 SHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 186 s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
+|+++...+......+++ .++|++++..|++|..|+. .++.++..|+++++.+.. ..+++.++++++|++.++|+
T Consensus 132 s~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~~~P~ 206 (436)
T TIGR01923 132 TFRNHYASAVGSKENLGF-TEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKF---NQLLEMIANERVTHISLVPT 206 (436)
T ss_pred ehHHHHHHHHHHHhhcCC-CCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEEeHHH
Confidence 999999998888888888 9999999999999999875 488999999999998766 38899999999999999999
Q ss_pred HHHHHHHHHHHhhcccChHHHH----------HHHHHHHhhhHHHhhh
Q psy2835 266 VWEKIHEKLMAVGKQTTGVKRW----------IANYAKSTSLQHYMAY 303 (305)
Q Consensus 266 ~~~~l~~~~~~~~~~~~sl~~~----------~~~~a~~~g~~~~~~~ 303 (305)
++..+.+..... +++|.+ +..+..+.|+++++.|
T Consensus 207 ~l~~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~Y 250 (436)
T TIGR01923 207 QLNRLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQYGLPIYLSY 250 (436)
T ss_pred HHHHHHhCcCCC----CceEEEEECCCCCCHHHHHHHHHhCCceeeEe
Confidence 999998753221 334332 2334444577777655
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=201.44 Aligned_cols=212 Identities=14% Similarity=0.042 Sum_probs=160.0
Q ss_pred HHHHHHHhcccceeeec-c-----CCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 4 FLKLGLERYHSVCIIGF-N-----APEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 4 ~l~~~~~~~~~~~~~~~-~-----~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+|...++++|++.++.. + ++++||+|+.++ ++++|+.|++ .|+++||+|+++++|+++++++++|++++|++
T Consensus 1 ~~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~-~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v 79 (227)
T TIGR03089 1 LLSPLLAADPASPRLTFYDDATGERVELSAATLANW-VAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVE 79 (227)
T ss_pred ChhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHH-HHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE
Confidence 35677888899777743 2 226999999995 9999999998 79999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEc-----cCC---CCCCCcccHHHHHHhcc
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY-----EGK---PDKPGVISWDELMELGR 148 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~---~~~~~~~~~~~l~~~~~ 148 (305)
++|++ ++++++++++++. ...+. .. +.++.+ ... ....++.++.+......
T Consensus 80 ~vp~n-------------~s~a~~~v~~~~~-~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (227)
T TIGR03089 80 VVLAG-------------DPDADVVVTGPDR-LAAAA-----GS--GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHG 138 (227)
T ss_pred EEeCC-------------CCCCCEEEeCcch-hhhcc-----cC--CceEEEeccccccCCCCCCCCcccchhhhhhccC
Confidence 99995 6799999998773 33322 11 222222 110 01123345555444211
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 228 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~ 228 (305)
...... ....++|+++|+||||+ +|.++..+. ...++ +++|+++ .+|++|++|+...++.
T Consensus 139 ~~~~~~-----~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l-~~~D~~l-~~Pl~H~~gl~~~~~~ 198 (227)
T TIGR03089 139 DQFAPY-----EPPDATAPALVAGGGEW---------TGAELVAAA----RAAGL-PPGDRVL-VLAWTDLEDFLATLLA 198 (227)
T ss_pred CCCCCC-----CCCCCCcceeeeccccc---------cHHHHHHHH----hhcCC-CCCCeEE-ecCCCchHHHHHHHHH
Confidence 111100 02356899999999985 666666554 45667 8999999 9999999999888999
Q ss_pred HHHhCcEEEEeCCccchhHHHHHhhhcCCc
Q psy2835 229 VMTVAATLWFADKNALKGSLINTLLEVRPH 258 (305)
Q Consensus 229 ~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt 258 (305)
++..|+++++.++++ +..+++.|++||||
T Consensus 199 ~l~~G~t~v~~~rFd-~~~~l~~i~~~~vT 227 (227)
T TIGR03089 199 PLAAGGSLVLVTHPD-PARLDQIAETERVT 227 (227)
T ss_pred HhccCceEEEecCCC-HHHHHHHHHhhcCC
Confidence 999999999998776 79999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=227.90 Aligned_cols=231 Identities=16% Similarity=0.100 Sum_probs=166.9
Q ss_pred ecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChH-----HHHHHHHHhccCCCccEEEEccCC
Q psy2835 57 GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-----QLEKILKVKAQCPKLKAIVQYEGK 131 (305)
Q Consensus 57 ~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~ 131 (305)
++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++.. ..+.+.++..... ...++.....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998641 1122222222121 2222222111
Q ss_pred CC-----CCCcccHHHHHHhccCCCC-chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCC
Q psy2835 132 PD-----KPGVISWDELMELGRAAPD-ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205 (305)
Q Consensus 132 ~~-----~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~ 205 (305)
.. ..+...++++......... ...........++++++|+|||||||.||||++||+++..+.......+++ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~ 158 (499)
T PLN03051 80 EPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDI-Q 158 (499)
T ss_pred cccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCC-C
Confidence 00 0123456666532111000 000000012246899999999999999999999999988776655566777 8
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccCh
Q psy2835 206 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTG 283 (305)
Q Consensus 206 ~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~s 283 (305)
++|++++..|++|..|+. .++.++..|+++++.+....+..+++.|+++++|++.++|+++..|+++.. ....++++
T Consensus 159 ~~d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~ 237 (499)
T PLN03051 159 PGDVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSK 237 (499)
T ss_pred CCCEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchh
Confidence 899999999999998874 588999999999998753336899999999999999999999999987543 33456788
Q ss_pred HHHHHHH
Q psy2835 284 VKRWIAN 290 (305)
Q Consensus 284 l~~~~~~ 290 (305)
||.++++
T Consensus 238 Lr~i~~g 244 (499)
T PLN03051 238 LRVFAST 244 (499)
T ss_pred heEEEec
Confidence 8866554
|
|
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=213.13 Aligned_cols=255 Identities=16% Similarity=0.166 Sum_probs=197.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
.+||.|+.++ +.++|..|.+.|+++||+|++.+|+.++++++++||.++|++..++...++++++...++.++++++++
T Consensus 96 ~~t~~el~~~-v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t 174 (626)
T KOG1175|consen 96 VWTYKELLDQ-VVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIIT 174 (626)
T ss_pred EEEHHHHHHH-HHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEE
Confidence 4899999996 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eChH--------HHHHHHHHhccCCCc----cEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEE
Q psy2835 104 EDDK--------QLEKILKVKAQCPKL----KAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLV 171 (305)
Q Consensus 104 ~~~~--------~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 171 (305)
.+.. ....+.+........ ...+.+... .....|+........... ..+...+||-+|+
T Consensus 175 ~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~a~~~~~------~~~~~~edpl~Il 245 (626)
T KOG1175|consen 175 QDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR---NRDLFWSLELKKASPEHP------CVPVKAEDPLFIL 245 (626)
T ss_pred EeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc---cccccHHHHhhhcCCCCC------ceecCccCceEEE
Confidence 7531 112222222222211 111111111 223445555444432222 1356789999999
Q ss_pred eccCCCCCCcceEechhHHHH-HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc-chhHHH
Q psy2835 172 YTSGTEGASKPVMLSHDNITF-NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA-LKGSLI 249 (305)
Q Consensus 172 ~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~-~~~~~~ 249 (305)
|||||||.||++.+++....- .+......+++ .++|+.++...+.|+.|..+.++.+|++|+++++.+... ++..++
T Consensus 246 fTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~-q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~ 324 (626)
T KOG1175|consen 246 FTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDL-QPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIW 324 (626)
T ss_pred ecCCCCCCCCceeeccCcchHHHhhhcceeccC-CCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhh
Confidence 999999999999999886555 44455556777 999999999999999999988888999999999987443 689999
Q ss_pred HHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 250 NTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 250 ~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
+.+.+|++|+++..|+.++.|.+.... ..++.++||.+..
T Consensus 325 ~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S 366 (626)
T KOG1175|consen 325 KILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGS 366 (626)
T ss_pred hhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEee
Confidence 999999999999999999988765433 3444455665443
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-23 Score=192.13 Aligned_cols=242 Identities=18% Similarity=0.184 Sum_probs=196.3
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.+...+.+.|+..++...+..+||+++..+ ++++|..|.+.|+.+++.|+++.+.+.++++.++|++++|..++|+++
T Consensus 231 ~~f~~~a~~~p~~~a~~~~~~~lty~el~~~-a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~ 309 (642)
T COG1020 231 LLFEEQAATTPDAVALVRGGQQLTYAELDAR-ANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDP 309 (642)
T ss_pred HHHHHHHHhCCCceeEecCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCC
Confidence 3678889999999888788899999999996 999999999999999999999998899999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+.+.+++++.+++.+++..... ... ...+. +..+... +. .....+. ....
T Consensus 310 ~~P~~r~~~~l~~~~~~~~~~~~~~~--~~~---~~~~~----~~~~~~~-------~~----~~~~~~~------~~~~ 363 (642)
T COG1020 310 LYPAERLAYILEDSRPTLLLTQAHLR--VDD---VGLPG----LALDDAL-------SE----IPDTDPI------PQAL 363 (642)
T ss_pred CChHHHHHHHHhhcCccEEEeccccc--ccc---ccCCc----ccccccc-------cc----CCccCcc------cccC
Confidence 99999999999999999999983310 000 00110 1111100 00 0000000 0123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.+++.++++|||||||+||||..+|+++.+........+.+ +..|+++...++.+ +..++.++.++..|+++++.+..
T Consensus 364 ~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~-~~~d~~l~~~s~~f-D~~~~~~f~~l~~G~~l~~~~~~ 441 (642)
T COG1020 364 LGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGL-DADDRVLALASLSF-DASVFEIFGALLEGARLVLAPAL 441 (642)
T ss_pred CCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCC-CcccEEeecCCccc-chhHHHHHHHHhCCCEEEecCcc
Confidence 55899999999999999999999999999977777777888 88999999999966 55567899999999999999854
Q ss_pred c--chhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 243 A--LKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 243 ~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
. ++..+.+.+.++++|++..+|.++..++..
T Consensus 442 ~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~ 474 (642)
T COG1020 442 LQVDPAALLELLEAQGITVLLLVPLLLRLLLLA 474 (642)
T ss_pred ccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence 3 268889999999999999999999999876
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=159.29 Aligned_cols=264 Identities=9% Similarity=0.018 Sum_probs=198.7
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
++|++.++++|+..++.. ...++||.+|..| +.+++.+|...+ +++||+|+++.+++.|++++++||+.+|.
T Consensus 774 e~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~kr-va~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~Gl 852 (1363)
T KOG3628|consen 774 EILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKR-VARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGL 852 (1363)
T ss_pred HHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHH-HHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCe
Confidence 689999999999555543 2358999999997 999999999774 79999999999999999999999999999
Q ss_pred eEEecCCCC------CHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC-----CccEEEEccCCCCCCCcccHHHHH
Q psy2835 76 FAAGMYTTN------SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP-----KLKAIVQYEGKPDKPGVISWDELM 144 (305)
Q Consensus 76 ~~v~i~~~~------~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~l~ 144 (305)
+++|++|.- ..+.+..+++.+++..|+++.. ...++...+... ....++..++.+ .+|..-.
T Consensus 853 iPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~--v~~lLrsr~~s~~~~~s~~p~i~~~~~~~-----~t~~k~~ 925 (1363)
T KOG3628|consen 853 IPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQK--VLKLLRSREASAHVDQSAIPLILVLPKLP-----ETIRKRK 925 (1363)
T ss_pred eeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHH--HHHHHhhhhHHHHhhhhcchhhhcccccc-----hhhhhhh
Confidence 999998853 4567889999999999999976 233322211111 111111111110 0011111
Q ss_pred HhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH
Q psy2835 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV 224 (305)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~ 224 (305)
.. .............+.+.+|++-+.--++|.--++.+||+++++......+...+ ..+.-++.+.+++.+.|+..
T Consensus 926 ~~---~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l-~~~rpl~~~~~~~sGlgf~~ 1001 (1363)
T KOG3628|consen 926 KN---IKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQL-YKSRPLLGCSSPYSGLGFNH 1001 (1363)
T ss_pred hh---hhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHcc-ccCCceEEEecCccchhHHH
Confidence 11 011111111112456899999999999999999999999999999999888888 88888888888888899999
Q ss_pred HHHHHHHhCcEEEEeCCccc---hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh
Q psy2835 225 DIYSVMTVAATLWFADKNAL---KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG 278 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~~~~~---~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~ 278 (305)
.++...+.|.+.++.++.+. |..+++.|++|+|.-++.+=..++.+.+......
T Consensus 1002 wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~ 1058 (1363)
T KOG3628|consen 1002 WCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSV 1058 (1363)
T ss_pred HHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccccc
Confidence 99999999999877765432 7899999999999999999998988887554433
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-17 Score=140.98 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=95.2
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCC--CceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA--ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~--~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
.+..++++|||||||.||+|++||+++...+......+++ .. .|++++.+|++|++|+.+.++.++..|+++++.+.
T Consensus 94 ~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~ 172 (386)
T TIGR02372 94 TPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGE-RPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA 172 (386)
T ss_pred CCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCc-CCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC
Confidence 3557899999999999999999999999988877777766 43 46899999999999988888999999999999887
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKR 286 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~ 286 (305)
+. +..+++.++.+ |++.++|++++.+.+.. .++++++.
T Consensus 173 ~~-~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~ 210 (386)
T TIGR02372 173 AP-ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG 210 (386)
T ss_pred CC-hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee
Confidence 65 57777777643 89999999999997642 34566664
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-16 Score=134.59 Aligned_cols=137 Identities=19% Similarity=0.164 Sum_probs=102.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE--e
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF--A 239 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~--~ 239 (305)
..++++++++|||||||.||+|++||+++.......... + ...++++..+|++|..|+.. ++.++..|+++++ .
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~-~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--L-GGPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--c-CCCCeEEEECChHHHHHHHH-HHHHHHcCCeEEecCc
Confidence 356899999999999999999999999999887765443 3 45678999999999999865 7888999999887 3
Q ss_pred CCccchhHHHHHhhhcC--CcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVR--PHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~--vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
.....+..+++.+++++ .++...+|..+..++.+... ..+++++|.++++ +..+.|+++++.|
T Consensus 108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~Y 182 (358)
T PRK07824 108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTY 182 (358)
T ss_pred CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecc
Confidence 33334789999999998 56667789888877664332 2346666644333 3344566666655
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-14 Score=125.65 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=100.5
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHH---HHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI---IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
..++++.+++||||||.||++.+||.++....... ...+++ .++|++++..+..+..+.....+..+..|++++..
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGG-RPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCC-CCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 34678889999999999999999999987654332 234577 88999988776554333333356677889999877
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcc--cChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ--TTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+... ++.+++.|++++||++.++|+++..|.+.......+ ..++|.++++ +.+.+|+++++.|
T Consensus 152 ~~~~-~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~Y 227 (422)
T TIGR02155 152 SGGQ-TEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIY 227 (422)
T ss_pred CCCC-HHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecc
Confidence 7655 589999999999999999999999998866544322 2355544332 2334666666655
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=127.51 Aligned_cols=248 Identities=15% Similarity=0.091 Sum_probs=159.7
Q ss_pred HHHHHHHhcccceeeec------c--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 4 FLKLGLERYHSVCIIGF------N--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 4 ~l~~~~~~~~~~~~~~~------~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
.+.+.+..+|......+ . -..+||++... .++.+++.+...|...|+.|++.+..+.++++..++.++.|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~-~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~ 119 (1032)
T KOG1178|consen 41 SFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRL-LSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGL 119 (1032)
T ss_pred HHHHHHhhcccCCCceEeecccccccccchhhhhhhc-ccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcce
Confidence 44555555665333222 1 24799999999 599999999999999999999999999999999999999999
Q ss_pred eEEecCCCCC----HHHHHH---HHhhCCceEEEEeChHHHHHHHHHhccC-CCccEEEEccCCCCCCCcccHHHHHHhc
Q psy2835 76 FAAGMYTTNS----PEACLH---CLVTSDANICVVEDDKQLEKILKVKAQC-PKLKAIVQYEGKPDKPGVISWDELMELG 147 (305)
Q Consensus 76 ~~v~i~~~~~----~~~~~~---~l~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 147 (305)
.+++++|+++ .+++.. .+......+ .... +-......+. +... +. .....+..+....
T Consensus 120 ~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i--~~~l---~i~~~~~~~~~~~~s----v~-----~~~~~f~~~~~~~ 185 (1032)
T KOG1178|consen 120 TFLPIDPSWPNSELAGYLMRIAHFLTSVELEI--VRRL---NIIDILLNSLFPKLS----VE-----TIADSFQMVLHNE 185 (1032)
T ss_pred EEEEecCCCcccccchHHHhhhhhheecccee--hhhh---hhHHHHhhccccccc----hh-----hccchhhhhhccC
Confidence 9999999999 232111 111111111 1110 0011011111 0000 00 0011122221111
Q ss_pred cCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHH
Q psy2835 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~ 227 (305)
.. .. ......+..+++.||||+||.||+|.-+|..+.....+....++. +.+++.-.....+........+.
T Consensus 186 ~~-r~------~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~-t~s~~~~~~~~~~~~d~i~~~~~ 257 (1032)
T KOG1178|consen 186 DT-RE------IRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPP-TGSDRFTFKTSVYFDDTIQKFIG 257 (1032)
T ss_pred CC-cc------eeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCc-CccchhhhhheeecccchHHHHh
Confidence 11 00 012355778999999999999999999999999999988888777 77776533333333333333355
Q ss_pred HHHHhCcEEEEeCCccc--hhHHHHHhhhcCCcEEEechHHHHHHHHHH
Q psy2835 228 SVMTVAATLWFADKNAL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 228 ~~l~~G~~~v~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 274 (305)
+.+.+|..+..+..... |..+.+.+++|+++..+.+|++.+.++...
T Consensus 258 ~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~ 306 (1032)
T KOG1178|consen 258 ALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAIL 306 (1032)
T ss_pred hHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhc
Confidence 66666665655544332 689999999999999999999988887643
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=117.37 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=99.3
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
..++++.+.+||||||.||+|.+||.++.......... .++ +++|+++...|..+..|.....+.++..|++++..
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~-~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGF-TAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 45688899999999999999999999988766544433 477 88999999999887666544345667788887644
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhc--ccChHHHHHHH----------H-HHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGK--QTTGVKRWIAN----------Y-AKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~sl~~~~~~----------~-a~~~g~~~~~~~ 303 (305)
... ...++.|+++++|.+.++|+.+..|.+....... +..++|.++++ + ...+|+++++.|
T Consensus 163 ~~~---~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~Y 236 (445)
T TIGR03335 163 GKC---TFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTY 236 (445)
T ss_pred Cch---hHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecC
Confidence 432 4568999999999999999998888776554432 23566654443 2 223577777665
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.2e-09 Score=96.50 Aligned_cols=243 Identities=13% Similarity=0.087 Sum_probs=170.7
Q ss_pred CccchHHHHHHHHHHHHH-HHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 23 PEWFYSDLGAIYAGGLAK-AFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~-~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
..+||..+..| +++.|+ .|-+.|..++|+|.++...+ .++++..++|+..|++++|+.+..+.+++..+++..+.+
T Consensus 123 ~~~twdkl~~r-A~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~ 201 (1363)
T KOG3628|consen 123 TSITWDKLLNR-AEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPER 201 (1363)
T ss_pred eeeeHHHHHHH-HHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccc
Confidence 36999999997 999999 77788999999999987665 699999999999999999999999999999999999999
Q ss_pred EEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCC-CC--chhHHh-hhccCCCceeEEEeccC
Q psy2835 100 ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAA-PD--ESLDRV-LETIATNECCTLVYTSG 175 (305)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~--~~~~~~-~~~~~~~~~~~i~~TSG 175 (305)
+++..... +++..-.. . -.+++..+...... .. ...+.. .+..... ..+|-||++
T Consensus 202 ~~l~t~a~--~r~~~~~~-~-----------------~~s~~k~v~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s 260 (1363)
T KOG3628|consen 202 VALTTEAG--ERAFINDN-S-----------------PVSLAKAVAWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRS 260 (1363)
T ss_pred eEeehhhh--HHHhhhcc-C-----------------cccHHHHHHhhhcccccceeehhhccCCceeee-eEEEEEecc
Confidence 99987652 22211100 0 01122222111000 00 000000 0011223 789999999
Q ss_pred CCCCCcceEechhHHHHHHHHHHHh--------------------hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 176 TEGASKPVMLSHDNITFNAACIIQY--------------------FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 176 tTG~pK~v~~s~~~l~~~~~~~~~~--------------------~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
++|.--|++.+|. +..+.+.+... ++. ...+..+.....+...|++.+++.++..|.|
T Consensus 261 ~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~s~~lGlilGV~~alfsg~c 338 (1363)
T KOG3628|consen 261 PLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPV-PSEDVLLTNLDPSQQLGLILGVLVALFSGYC 338 (1363)
T ss_pred chhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcccc-CcccceeeccCcccccchhhhhhhhhhcCce
Confidence 9999999999998 55544433221 122 5567888888888889999999999999999
Q ss_pred EEEeCCccc--hhHHHHHhhhcCCcEEEechHHHHHHHHHH-----------HHhhcccChHHHHHH
Q psy2835 236 LWFADKNAL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKL-----------MAVGKQTTGVKRWIA 289 (305)
Q Consensus 236 ~v~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~~~sl~~~~~ 289 (305)
.+..++... |..+.+.+.+||.+++..--..++.....+ +....+++++|.++.
T Consensus 339 ~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~V 405 (1363)
T KOG3628|consen 339 TIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMV 405 (1363)
T ss_pred eecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEE
Confidence 999987322 689999999999999877655554443221 223356777775544
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=82.12 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=90.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHH-HHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHI-AAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~-~g~~~~~~~~l~~G~~~v~ 238 (305)
..++...|--||||||+|+.+.++...+...+..+...+ +. ..+|++....-..-. .|+.. -..+--.|++++-
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~-~~gd~v~~~~~yGl~tgg~~~-~~ga~rig~~vip 165 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGV-RKGDKVQNAYGYGLFTGGLGL-HYGAERIGATVIP 165 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeeeccccCCchh-HHHHHhhCEEEEc
Confidence 446677799999999999999999998888666655544 44 677776665542111 22111 2333346777776
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh--cccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG--KQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~sl~~~~~~ 290 (305)
..+... +.-++.++.+++|++.++|+.+..|.+..+... .+-.+||.++++
T Consensus 166 ~~~g~~-~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~g 218 (438)
T COG1541 166 ISGGNT-ERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFG 218 (438)
T ss_pred cCCccH-HHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEe
Confidence 655443 788999999999999999999999999888873 566778877776
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00045 Score=61.48 Aligned_cols=126 Identities=20% Similarity=0.171 Sum_probs=74.2
Q ss_pred eEEEeccCCCCCCcceEechhHHHHHHHHH-HHhh--ccCCCCceEEEe--CchhHHHHHHHHHHHHHHhCc-EEEEeCC
Q psy2835 168 CTLVYTSGTEGASKPVMLSHDNITFNAACI-IQYF--KLESAALSVISF--LPLSHIAAQTVDIYSVMTVAA-TLWFADK 241 (305)
Q Consensus 168 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~-~~~~--~~~~~~~~~l~~--~pl~~~~g~~~~~~~~l~~G~-~~v~~~~ 241 (305)
..+..||||||.|=.+..+........... .... ++ ..++++... .+. + +...+.+.. .+-+.+-
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~-~~g~r~a~~~~~~~-~-------ly~~~~~~~~~~~~~~l 172 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGL-FAKHRIAFFLRADN-N-------LYQSVNNRWISLDFFDL 172 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcccc-ccCCcEEEEEccCh-h-------HHHHHHhccceeeecCC
Confidence 456789999999999999988665433222 2222 33 444554444 222 2 122222221 1222322
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------H-HHHhhhHHHhhh
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------Y-AKSTSLQHYMAY 303 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~-a~~~g~~~~~~~ 303 (305)
....+..++.|++++|+++.+.|+.+..|.+.......+ .+++.+++. . .+.+|+++++.|
T Consensus 173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~Y 244 (430)
T TIGR02304 173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIY 244 (430)
T ss_pred CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhCCCeeEcc
Confidence 232488999999999999999999999999876554322 234432222 1 223577777665
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.013 Score=51.69 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=73.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
-+|+.|+.. ++..+|..|...|..+||+|.....-+ ..-.-..+|+.++|+.++|+.+. ..+....++++.++.+|
T Consensus 109 ~~t~~D~~~-wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 109 GYTAKDIER-WAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred ecCHHHHHH-HHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 399999999 699999999999999999988765511 11167889999999999999983 44566788999999999
Q ss_pred EEeChHHHHHHHHHhc
Q psy2835 102 VVEDDKQLEKILKVKA 117 (305)
Q Consensus 102 ~~~~~~~~~~~~~~~~ 117 (305)
.+.....+..++.+.+
T Consensus 187 ~~tps~~l~lae~~~~ 202 (438)
T COG1541 187 AATPSYLLYLAEEAEE 202 (438)
T ss_pred EEChHHHHHHHHHHHH
Confidence 9998865444444433
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.61 Score=40.82 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=61.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc---cCC-CCceEEEeCchhHH---HHH-HHHHHHHHHhCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK---LES-AALSVISFLPLSHI---AAQ-TVDIYSVMTVAA 234 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~-~~~~~l~~~pl~~~---~g~-~~~~~~~l~~G~ 234 (305)
.++++..++-||||||.|.-+.+.+..+..+.......+. ... ....++...|-... .+. .......+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 3467788999999999986666666666665544443332 101 12233333333211 111 111222333445
Q ss_pred EEEEeCCc-cchhHHHHHh----hhcCCcEEEechHHHHHHHHHHHHh
Q psy2835 235 TLWFADKN-ALKGSLINTL----LEVRPHVFLAVPRVWEKIHEKLMAV 277 (305)
Q Consensus 235 ~~v~~~~~-~~~~~~~~~i----~~~~vt~~~~~P~~~~~l~~~~~~~ 277 (305)
. .+..+. .+.+.+.+.+ .+.++..+++.|.++..++...+..
T Consensus 167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~ 213 (365)
T PF04443_consen 167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEER 213 (365)
T ss_pred e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhc
Confidence 5 444332 2234444444 3556888999999888777665544
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.9 Score=39.00 Aligned_cols=80 Identities=15% Similarity=-0.008 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh--HHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE--WFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
-+|.+++.. .+...+..+...|+.+||++.+..+-+.. .....+++...|+.+++... .+....++++.++.++
T Consensus 105 ~~T~~dl~~-~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 105 FLTWDDWKR-YAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eecHHHHHH-HHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 378999988 58888888888899999999888765542 23456788899998876653 2345678899999998
Q ss_pred EEeChH
Q psy2835 102 VVEDDK 107 (305)
Q Consensus 102 ~~~~~~ 107 (305)
++....
T Consensus 181 ~~~ps~ 186 (445)
T TIGR03335 181 VASVFK 186 (445)
T ss_pred EECHHH
Confidence 876653
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=92.58 E-value=2.6 Score=37.70 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCh--hHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAP--EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 25 ~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
+|..++.. ....++..+...|+.+||++........ ......++....|+.++++++.. .+.+...+++.++++++
T Consensus 95 ~t~~~~~~-~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 95 YTQNDIDT-WSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM 172 (422)
T ss_pred cCHHHHHH-HHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence 77888877 4666777778889999999877654432 22334677889999999988764 57788999999999999
Q ss_pred EeChH
Q psy2835 103 VEDDK 107 (305)
Q Consensus 103 ~~~~~ 107 (305)
+....
T Consensus 173 ~~Ps~ 177 (422)
T TIGR02155 173 VTPSY 177 (422)
T ss_pred EcHHH
Confidence 98774
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=89.94 E-value=4.3 Score=35.98 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=69.8
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++. -....+|++.+...+..+... .++ +.++++....|-+. .++..+++++..|+..+
T Consensus 6 ~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~-~~~~~V~i~~~n~~--~~~~~~~A~~~~G~~~v 74 (417)
T PF00501_consen 6 QRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGV-KKGDRVAILLPNSI--EFVVAFLACLRAGAIPV 74 (417)
T ss_dssp HHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTS-STTSEEEEEESSSH--HHHHHHHHHHHTT-EEE
T ss_pred hhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCC-CccccccccCCccc--eeeeeeccccccccccc
Confidence 44788888876 245688999999877766554 466 78888888777754 23444889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEe
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLA 262 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~ 262 (305)
..+.....+.+...+++.++.+++.
T Consensus 75 ~l~~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 75 PLDPSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp EEETTSSHHHHHHHHHHHTESEEEE
T ss_pred ccccccccccccccccccceeEEEE
Confidence 9977665788999999999999996
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.36 E-value=7.1 Score=33.04 Aligned_cols=91 Identities=12% Similarity=-0.002 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh-H
Q psy2835 30 LGAIYAGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD-K 107 (305)
Q Consensus 30 l~~~~~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~-~ 107 (305)
+.+|.+..+.....+.| +++|+ ..|=...+.--+...+.|...|..++..=|..-..+...+|+..++.+++++.. .
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g 119 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCC
Confidence 33444444444555666 78888 555556666667777777788888777777666678889999999999999872 1
Q ss_pred ----HHHHHHHHhccCCC
Q psy2835 108 ----QLEKILKVKAQCPK 121 (305)
Q Consensus 108 ----~~~~~~~~~~~~~~ 121 (305)
..+++.++..+.++
T Consensus 120 ~~~~a~~~a~el~~~~p~ 137 (300)
T COG0031 120 NMKGAIERAKELAAEIPG 137 (300)
T ss_pred chHHHHHHHHHHHHhCCC
Confidence 23444445555544
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=13 Score=34.55 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=71.5
Q ss_pred CCCceeEEEeccCCC-CCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTE-GASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++....++. +..+...+|++.+...+..+...+ ++ .++|++...++-+.- .+..+++++..|+..+.
T Consensus 19 ~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~-~~gd~V~~~~~n~~~--~~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 19 RPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGI-GRGMRAVLMVTPSLE--FFALTFALFKAGAVPVL 95 (552)
T ss_pred CCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCcHH--HHHHHHHHHHcCeEEEE
Confidence 556777654332221 223344789999988777666554 67 889999998886653 34447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEech
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.+....++.+...+++.++..+...+
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEecc
Confidence 87766568888899999999988755
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=86.15 E-value=21 Score=34.00 Aligned_cols=106 Identities=7% Similarity=-0.107 Sum_probs=76.5
Q ss_pred cCCCceeEEEec--cCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 162 IATNECCTLVYT--SGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 162 ~~~~~~~~i~~T--SGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
..++.+++.... .|.+|. -..+|++.+...+..+... .++ .++|++...+|-.--+ +...++++..|+.+
T Consensus 56 ~~p~~~al~~~~~~~~~~~~--~~~lTy~el~~~v~~lA~~L~~~Gv-~~gd~Vai~~~n~~e~--~~~~lA~~~~G~v~ 130 (651)
T PLN02736 56 TFRDYKYLGTRIRVDGTVGE--YKWMTYGEAGTARTAIGSGLVQHGI-PKGACVGLYFINRPEW--LIVDHACSAYSYVS 130 (651)
T ss_pred hCCCCCeEEEEecCCCCCCC--cEEEEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCCHHH--HHHHHHHHHcCCeE
Confidence 356777764321 232221 2458999998887776554 467 8899998888766533 34478999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
+.......++.+...++..++.+++..+..+..+..
T Consensus 131 vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~ 166 (651)
T PLN02736 131 VPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLS 166 (651)
T ss_pred EEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHH
Confidence 987766667899999999999999999887766544
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=86.09 E-value=13 Score=33.99 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=67.2
Q ss_pred echhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEE
Q psy2835 185 LSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFL 261 (305)
Q Consensus 185 ~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~ 261 (305)
+|+..+...+..+... .++ +.++++....|-+.. .+..+++++..|+..+..+....+..+...+++.++..++
T Consensus 32 ~Ty~~l~~~~~~~a~~L~~~g~-~~~~~V~l~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~ 108 (521)
T PRK06187 32 TTYAELDERVNRLANALRALGV-KKGDRVAVFDWNSHE--YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVL 108 (521)
T ss_pred EcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEE
Confidence 9999988876665544 456 789999999888763 3445899999999999888766678899999999999999
Q ss_pred echHHHHHHHH
Q psy2835 262 AVPRVWEKIHE 272 (305)
Q Consensus 262 ~~P~~~~~l~~ 272 (305)
........+.+
T Consensus 109 ~~~~~~~~~~~ 119 (521)
T PRK06187 109 VDSEFVPLLAA 119 (521)
T ss_pred EcchHHHHHHH
Confidence 88877666543
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=13 Score=34.78 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=74.0
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. .| -.+|++.+...+..+...+ ++ ..+|++...+|-.- .+...+++++..|+.++.
T Consensus 26 ~~p~~~Al~~--~~-------~~~Ty~eL~~~~~~~a~~L~~~Gl-~~gd~Vai~~~n~~--e~~~~~la~~~~G~~~vp 93 (579)
T PLN03102 26 CYPNRTSIIY--GK-------TRFTWPQTYDRCCRLAASLISLNI-TKNDVVSVLAPNTP--AMYEMHFAVPMAGAVLNP 93 (579)
T ss_pred hCCCCeEEEE--CC-------cEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEee
Confidence 3567777653 11 2689999998877766654 67 88999998888654 334458899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...+++.+++.+...+.....+
T Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 125 (579)
T PLN03102 94 INTRLDATSIAAILRHAKPKILFVDRSFEPLA 125 (579)
T ss_pred ccccCCHHHHHHHHhccCCeEEEEChhhHHHH
Confidence 88776679999999999999999877665444
|
|
| >PLN02565 cysteine synthase | Back alignment and domain information |
|---|
Probab=85.41 E-value=21 Score=30.78 Aligned_cols=72 Identities=13% Similarity=-0.066 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 34 YAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 34 ~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.+..+...+.+.|. .+|....+....+..-....+++...|..+..+-|...+......++..+++++++++
T Consensus 49 ~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~ 121 (322)
T PLN02565 49 IGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDP 121 (322)
T ss_pred HHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Confidence 34445555566664 7786656666777777888888889999988877877888888999999999999985
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=84.74 E-value=18 Score=35.11 Aligned_cols=100 Identities=3% Similarity=0.069 Sum_probs=74.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.-..|..|.+ ...+|++.|...+..+... .++ .++|++...+|-+-- .+..+++++..|+..+.+
T Consensus 188 ~pd~~Ai~~~~e~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~GdrVai~~pn~~e--~via~LA~~~~Gav~vpi 263 (728)
T PLN03052 188 TDDSIAIIWRDEGSDDLP-VNRMTLSELRSQVSRVANALDALGF-EKGDAIAIDMPMNVH--AVIIYLAIILAGCVVVSI 263 (728)
T ss_pred CCCCeEEEEECCCCCCCc-eEEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHH--HHHHHHHHHHcCCEEEee
Confidence 457777654333322222 3568999998877766654 467 899999999998653 334488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
.....++.+...++..++.+++.....
T Consensus 264 ~p~~~~~~l~~rl~~~~~k~lit~d~~ 290 (728)
T PLN03052 264 ADSFAPSEIATRLKISKAKAIFTQDVI 290 (728)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEcCcc
Confidence 777667999999999999999887643
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=84.64 E-value=7.1 Score=31.68 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=43.5
Q ss_pred HHcCCCCCCeEEEEecCCh--hHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 43 LKLGLERYHSVCIIGFNAP--EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
...|+.++|++. .+|=.. -....+++.+..|+..+.. ++.+++.+...+++.++
T Consensus 171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v 226 (227)
T TIGR03089 171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV 226 (227)
T ss_pred hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence 567889999998 877544 3345689999999998887 58999999999888765
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=84.27 E-value=23 Score=32.16 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=74.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
.+++.++++. ....+|+..+...+..+...+ ++ .+++++...++-+.- ++..+++++..|+..+
T Consensus 14 ~~p~~~a~~~---------~~~~~ty~~l~~~~~~la~~L~~~~g~-~~~~~V~i~~~~~~~--~~~~~la~~~~G~~~~ 81 (496)
T PRK06839 14 LHPDRIAIIT---------EEEEMTYKQLHEYVSKVAAYLIYELNV-KKGERIAILSQNSLE--YIVLLFAIAKVECIAV 81 (496)
T ss_pred HCCCCeEEEE---------CCceEEHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCHH--HHHHHHHHHhcCcEEE
Confidence 3567777663 145799999998877766554 56 788998888877753 3444889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
..+....+..+...+++.+++.++..+.....+.
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 115 (496)
T PRK06839 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMAL 115 (496)
T ss_pred ecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHH
Confidence 8886665788888999999999999887765543
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=84.17 E-value=18 Score=33.62 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=75.1
Q ss_pred ceEechhHHHHHHHHHHHhhc-----cCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcC
Q psy2835 182 PVMLSHDNITFNAACIIQYFK-----LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVR 256 (305)
Q Consensus 182 ~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~ 256 (305)
+..+|++.+...+..++..+. + +.+|++...+|=+.-+.. ..++++..|+.+.-.....++.++...++..+
T Consensus 43 g~~~T~~e~~~~~~r~A~~L~~~~~~i-~~gDvV~i~~pNs~~~~~--~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~ 119 (537)
T KOG1176|consen 43 GRELTYSELHDRCRRLASALSELGLGI-KKGDVVGILAPNTPEFVE--LALAVPMAGAVLNPLNPRLTASEIAKQLKDSK 119 (537)
T ss_pred CcEEcHHHHHHHHHHHHHHHHhcCCCC-CCCCEEEEEcCCCHHHHH--HHHHHHHcCccccccCcccCHHHHHHHHHhcC
Confidence 789999999998888777653 5 779999999998775443 36888899999988877776789999999999
Q ss_pred CcEEEechHHHHHHHHHH
Q psy2835 257 PHVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 257 vt~~~~~P~~~~~l~~~~ 274 (305)
+.+++.....+..+.+..
T Consensus 120 ~kiif~d~~~~~~i~~~~ 137 (537)
T KOG1176|consen 120 PKLIFVDEDFYDKISEAT 137 (537)
T ss_pred CeEEEEcCchHHHHHHHH
Confidence 999999999888886543
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=84.02 E-value=13 Score=34.39 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=71.0
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.. .| ...+|+..+...+..+...+ ++ .++|++...++-+.-+ +..+++++..|+..+.
T Consensus 26 ~~p~~~a~~~~-~~------~~~~Ty~el~~~~~~~a~~L~~~g~-~~g~~V~i~~~~~~e~--~~~~lA~~~~G~v~v~ 95 (540)
T PRK05857 26 QQPEAIALRRC-DG------TSALRYRELVAEVGGLAADLRAQSV-SRGSRVLVISDNGPET--YLSVLACAKLGAIAVM 95 (540)
T ss_pred hCCCcEEEeec-CC------CceeeHHHHHHHHHHHHHHHHHhCc-CCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEe
Confidence 35677776532 22 14689999998877766654 56 8899999888776633 3448999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
++....++.+...++..++..++..+..
T Consensus 96 l~~~~~~~~l~~~~~~~~~~~ii~~~~~ 123 (540)
T PRK05857 96 ADGNLPIAAIERFCQITDPAAALVAPGS 123 (540)
T ss_pred cCccCCHHHHHHHHHhcCCceEEEeccc
Confidence 8876667888889999999988877653
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=84.00 E-value=20 Score=32.77 Aligned_cols=98 Identities=9% Similarity=-0.044 Sum_probs=73.4
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. ...+|+..+...+..+...+ ++ .++|++....|-..- +...+++++..|+..+..
T Consensus 24 ~~~~~a~~~~---------~~~~Ty~~l~~~~~~~a~~L~~~gi-~~~~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~l 91 (523)
T PRK08316 24 YPDKTALVFG---------DRSWTYAELDAAVNRVAAALLDLGL-KKGDRVAALGHNSDA--YALLWLACARAGAVHVPV 91 (523)
T ss_pred CCCCeEEEEC---------CceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHhcCcEEEec
Confidence 4566776532 15689999888776665543 56 788998888877663 234488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
+....++.+...+++.++..++..+.....+.+
T Consensus 92 ~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~ 124 (523)
T PRK08316 92 NFMLTGEELAYILDHSGARAFLVDPALAPTAEA 124 (523)
T ss_pred ccccCHHHHHHHHHhCCCCEEEEccchHHHHHH
Confidence 876656888899999999999988877666543
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=84.00 E-value=20 Score=32.72 Aligned_cols=96 Identities=6% Similarity=-0.032 Sum_probs=71.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. . +-.+|++.+...+..+... .++ ..+|++....|-.-- .+..+++++..|+..+..
T Consensus 18 ~~~~~a~~~--~-------~~~~Ty~~l~~~~~~~a~~L~~~gv-~~g~~V~l~~~~~~~--~~~~~la~~~~G~~~v~l 85 (513)
T PRK07656 18 FGDKEAYVF--G-------DQRLTYAELNARVRRAAAALAALGI-GKGDRVAIWAPNSPH--WVIAALGALKAGAVVVPL 85 (513)
T ss_pred CCCCeEEEe--C-------CCceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCChH--HHHHHHHHHhcCeEEEec
Confidence 456777654 1 2358999998877666554 356 788999888877643 334478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....+..+.+.+++.++..+...+.....+
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~ 116 (513)
T PRK07656 86 NTRYTADEAAYILARGDAKALFVLGLFLGVD 116 (513)
T ss_pred CcccCHHHHHHHHhhcCceEEEEchhhHHHH
Confidence 8766678888999999999998887765544
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.48 E-value=20 Score=34.20 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=71.6
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
++.++++.-..+ .+ ....+|++.+...+..+... .++ ..+|++...+|..--. +..+++++..|+..+...
T Consensus 75 ~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~GDrV~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 148 (647)
T PTZ00237 75 RDQDALIYECPY-LK--KTIKLTYYQLYEKVCEFSRVLLNLNI-SKNDNVLIYMANTLEP--LIAMLSCARIGATHCVLF 148 (647)
T ss_pred CCceEEEEEcCC-CC--ceEEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHH--HHHHHHHHHhCcEEEeeC
Confidence 566676543221 11 23579999999887776665 477 8999999999987633 344889999999988887
Q ss_pred CccchhHHHHHhhhcCCcEEEech
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
....++.+...++..++.+++...
T Consensus 149 ~~~~~~~l~~~l~~~~~~~li~~~ 172 (647)
T PTZ00237 149 DGYSVKSLIDRIETITPKLIITTN 172 (647)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcc
Confidence 766679999999999999998764
|
|
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=83.02 E-value=24 Score=29.63 Aligned_cols=81 Identities=15% Similarity=0.019 Sum_probs=57.5
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC----CHHHHHHHH
Q psy2835 18 IGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN----SPEACLHCL 93 (305)
Q Consensus 18 ~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~----~~~~~~~~l 93 (305)
..+.+..+-.+=+.+ +-.+|..|++.|. .|.+++.+......- .+...|..+..++-.. ..+++..++
T Consensus 5 r~Da~~~iG~GHv~R--cl~LA~~l~~~g~----~v~f~~~~~~~~~~~--~i~~~g~~v~~~~~~~~~~~d~~~~~~~l 76 (279)
T TIGR03590 5 RADASSEIGLGHVMR--CLTLARALHAQGA----EVAFACKPLPGDLID--LLLSAGFPVYELPDESSRYDDALELINLL 76 (279)
T ss_pred EecCCccccccHHHH--HHHHHHHHHHCCC----EEEEEeCCCCHHHHH--HHHHcCCeEEEecCCCchhhhHHHHHHHH
Confidence 334556677777776 7889999987653 577777776554433 3357788877775443 355788999
Q ss_pred hhCCceEEEEeCh
Q psy2835 94 VTSDANICVVEDD 106 (305)
Q Consensus 94 ~~~~~~~v~~~~~ 106 (305)
+..+|+++++|..
T Consensus 77 ~~~~~d~vV~D~y 89 (279)
T TIGR03590 77 EEEKFDILIVDHY 89 (279)
T ss_pred HhcCCCEEEEcCC
Confidence 9999999999974
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=82.97 E-value=14 Score=34.36 Aligned_cols=97 Identities=8% Similarity=0.036 Sum_probs=73.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++- + .-.+|++.+...+..+...+ ++ .++|++...++-.- .++..+++++..|+..+.
T Consensus 61 ~~pd~~Al~~---~------~~~~Ty~el~~~~~~la~~L~~~gi-~~gd~V~i~~~n~~--~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 61 RAPDRAALID---E------RGTLTYAELDEQSNALARGLLALGV-RAGDGVAVLARNHR--GFVLALYAAGKVGARIIL 128 (549)
T ss_pred HCCCceEEEE---C------CCceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCH--HHHHHHHHHHhcCCEEEE
Confidence 3567777652 1 12689999988777665554 66 78999988876654 334558999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...+++.++..+...+.....+
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 160 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLL 160 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHH
Confidence 98776678899999999999999988766655
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=82.75 E-value=23 Score=32.46 Aligned_cols=102 Identities=8% Similarity=0.021 Sum_probs=75.1
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.-.. .| ..-.+|+..+...+..+... .++ .++|++....+-+.-+ +..+++++..|+.++.
T Consensus 19 ~~p~~~a~~~~~~--~~--~~~~~ty~~l~~~v~~la~~L~~~g~-~~~~~v~i~~~n~~~~--~~~~la~~~~G~~~v~ 91 (517)
T PRK08008 19 VYGHKTALIFESS--GG--VVRRYSYLELNEEINRTANLFYSLGI-RKGDKVALHLDNCPEF--IFCWFGLAKIGAIMVP 91 (517)
T ss_pred HCCCceEEEcccC--CC--ccceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEE
Confidence 3677788664321 11 12358999988877776654 467 8889999988887643 3447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...+++.++..++..+.....+
T Consensus 92 l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~ 123 (517)
T PRK08008 92 INARLLREESAWILQNSQASLLVTSAQFYPMY 123 (517)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEecchhHHH
Confidence 88777678999999999999998887655443
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=82.44 E-value=23 Score=33.49 Aligned_cols=97 Identities=5% Similarity=0.085 Sum_probs=72.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++... ..+| ..-.+|++.+...+..+... .++ .++|++...+|-.-- .+..+++++..|+..+..
T Consensus 70 ~p~~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~i 143 (625)
T TIGR02188 70 RPDKVAIIWEG-DEPG--EVRKITYRELHREVCRFANVLKSLGV-KKGDRVAIYMPMIPE--AAIAMLACARIGAIHSVV 143 (625)
T ss_pred CCCCeEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCCEEecc
Confidence 56778876432 1122 24579999998887766654 467 899999999987653 344488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.....++.+...++..++..++....
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~li~~~~ 169 (625)
T TIGR02188 144 FGGFSAEALADRINDAGAKLVITADE 169 (625)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 77666789999999999999987654
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=82.36 E-value=23 Score=33.59 Aligned_cols=97 Identities=6% Similarity=0.105 Sum_probs=73.0
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++... .. ......+|++.+...+..+...+ ++ .++|++...+|-.--+ +..+++++..|+..+..
T Consensus 80 ~p~~~Al~~~~--~~-~~~~~~lTy~eL~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~v~l 153 (637)
T PRK00174 80 RGDKVAIIWEG--DD-PGDSRKITYRELHREVCRFANALKSLGV-KKGDRVAIYMPMIPEA--AVAMLACARIGAVHSVV 153 (637)
T ss_pred CCCCeEEEEEC--CC-CCceEEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEec
Confidence 56778776422 11 11356799999999887766654 67 8899999998877533 34488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.....++.+...++..++.+++....
T Consensus 154 ~~~~~~~~l~~~l~~~~~~~li~~~~ 179 (637)
T PRK00174 154 FGGFSAEALADRIIDAGAKLVITADE 179 (637)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCc
Confidence 77766789999999999999987654
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=81.80 E-value=23 Score=32.95 Aligned_cols=95 Identities=6% Similarity=0.022 Sum_probs=72.4
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++. . +..+|+..+...+..+...+ ++ ..+|++...+|-..-+ ...+++++..|+..+.
T Consensus 37 ~p~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~gi-~~gd~Vai~~~n~~~~--~~~~la~~~~Ga~~v~ 104 (562)
T PRK05677 37 FADKPAFSN--L-------GKTLTYGELYKLSGAFAAWLQQHTDL-KPGDRIAVQLPNVLQY--PVAVFGAMRAGLIVVN 104 (562)
T ss_pred CCCCeeEEE--C-------CceeeHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCHHH--HHHHHHHHHcCeEEee
Confidence 567777653 1 23689999998887776644 56 8899999998887533 3448899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEK 269 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~ 269 (305)
.+.....+.+...+++.++..+.........
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~ 135 (562)
T PRK05677 105 TNPLYTAREMEHQFNDSGAKALVCLANMAHL 135 (562)
T ss_pred cCCCCCHHHHHHHHhccCceEEEEecchhhh
Confidence 8776666889999999999999876655443
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=81.61 E-value=22 Score=32.95 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=72.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++..- ++.++.-.+|+..+...+..+...+ ++ .++|++...+|-..-+ +..+++.+..|+..+..
T Consensus 37 ~p~~~A~~~~~---~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~-~~g~~Val~~~n~~e~--~~~~la~~~~G~~~vpl 110 (547)
T PRK13295 37 CPDKTAVTAVR---LGTGAPRRFTYRELAALVDRVAVGLARLGV-GRGDVVSCQLPNWWEF--TVLYLACSRIGAVLNPL 110 (547)
T ss_pred CCCceEEEecC---CCccccceeeHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCChHH--HHHHHHHHhcCcEEecc
Confidence 56777766432 2334445799999988777666654 67 8899999988876533 34478999999999887
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.....++.+...++..++..+...+.
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~ 136 (547)
T PRK13295 111 MPIFRERELSFMLKHAESKVLVVPKT 136 (547)
T ss_pred ccccCHHHHHHHHHhcCceEEEEecc
Confidence 76666788899999999999887654
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=81.49 E-value=0.7 Score=42.71 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.7
Q ss_pred cCCCceeEEEeccCCCCC-CcceEechhHHHH
Q psy2835 162 IATNECCTLVYTSGTEGA-SKPVMLSHDNITF 192 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~-pK~v~~s~~~l~~ 192 (305)
..++.+.+...||||||. ||-+++|.+.+..
T Consensus 77 L~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 77 LTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp TSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 356778999999999999 9999999998766
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.99 E-value=18 Score=33.18 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=72.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. .+ -.+|+..+...+..+...+ ++ .++|++...++-+- ..+..+++.+..|+..+..
T Consensus 48 ~p~~~a~~~--~~-------~~lTy~el~~~~~~la~~L~~~gi-~~g~~V~i~~~~~~--~~~~~~la~~~~G~v~vpl 115 (516)
T PRK13383 48 WPGRTAIID--DD-------GALSYRELQRATESLARRLTRDGV-APGRAVGVMCRNGR--GFVTAVFAVGLLGADVVPI 115 (516)
T ss_pred CCCCcEEEe--CC-------CcEeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCH--HHHHHHHHHHHhCeEEEEc
Confidence 566777653 11 1589999988777766654 56 78999888887654 3344478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+....++.+...+++.++..+...+...+.+.
T Consensus 116 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 147 (516)
T PRK13383 116 STEFRSDALAAALRAHHISTVVADNEFAERIA 147 (516)
T ss_pred CccCCHHHHHHHHhcCCCCEEEEchhHHHHHH
Confidence 87766789999999999999998887665543
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=80.88 E-value=30 Score=33.15 Aligned_cols=98 Identities=12% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.-.. -.| ....+|++.|...+..+... .++ +++|++...+|-.-- .+..+++++..|+..+.+
T Consensus 102 ~~~~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~GdrV~i~~pn~~e--~v~a~lA~~~~Gav~vpv 175 (666)
T PLN02654 102 NGDKIAIYWEGN-EPG--FDASLTYSELLDRVCQLANYLKDVGV-KKGDAVVIYLPMLME--LPIAMLACARIGAVHSVV 175 (666)
T ss_pred CCCCEEEEEEcC-CCC--ceEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEec
Confidence 457777653221 111 23568999999887776654 467 899999999988653 344588999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
.....++.+...++..++.++......
T Consensus 176 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 202 (666)
T PLN02654 176 FAGFSAESLAQRIVDCKPKVVITCNAV 202 (666)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEcCcc
Confidence 776667899999999999999876543
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=80.75 E-value=31 Score=31.04 Aligned_cols=73 Identities=10% Similarity=-0.091 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 34 YAGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 34 ~~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+..+.....+.| +.+|....+....+..-+.+.++|...|..+..+=|....++....++..+++++++++.
T Consensus 157 ~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 157 IGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCC
Confidence 3444444555666 478866667777777788888888889988877777777788889999999999999754
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=80.56 E-value=31 Score=32.44 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=73.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.- .-.+|+..+...+..+... .++ .++|++...++-..- ++..+++++..|+..+.
T Consensus 49 ~~p~~~Ai~~~---------~~~~Ty~eL~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~--~v~~~lA~~~~G~~~v~ 116 (600)
T PRK08279 49 RHPDRPALLFE---------DQSISYAELNARANRYAHWAAARGV-GKGDVVALLMENRPE--YLAAWLGLAKLGAVVAL 116 (600)
T ss_pred hCCCCcEEEeC---------CCcccHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCHH--HHHHHHHHHhcCcEEee
Confidence 35677776641 2368999998877666554 466 788999998877653 34458899999999988
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+.....+.+...+++.++..++........+.
T Consensus 117 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 149 (600)
T PRK08279 117 LNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFE 149 (600)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 877665688889999999999998887666553
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.48 E-value=40 Score=30.88 Aligned_cols=100 Identities=5% Similarity=0.034 Sum_probs=75.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++...+| -.+|+..+...+..+...+ ++ .+++++...++-..-+ ...+++.+..|+..+.
T Consensus 9 ~~p~~~a~~~~~~~-------~~~ty~~l~~~~~~la~~L~~~g~-~~~~~V~v~~~~~~~~--~~~~~a~~~~G~~~~~ 78 (511)
T PRK13391 9 TTPDKPAVIMASTG-------EVVTYRELDERSNRLAHLFRSLGL-KRGDHVAIFMENNLRY--LEVCWAAERSGLYYTC 78 (511)
T ss_pred hCCCceEEEecCCC-------CEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHH--HHHHHHHHHhccEEec
Confidence 35677776654332 2599999988777666654 56 7889998888877633 3447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+....+..+...+++.++..+...+.....+.
T Consensus 79 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 111 (511)
T PRK13391 79 VNSHLTPAEAAYIVDDSGARALITSAAKLDVAR 111 (511)
T ss_pred cccccCHHHHHHHHhccCCcEEEEchhhHHHHH
Confidence 877766788899999999999988887665543
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=80.44 E-value=21 Score=32.55 Aligned_cols=85 Identities=5% Similarity=-0.050 Sum_probs=65.9
Q ss_pred eEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcE
Q psy2835 183 VMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHV 259 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~ 259 (305)
-.+|+..+...+...... .++ +++|++...++-+.-. . ..+++++..|+..+..+.......+...+++.+++.
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~-~~~~~V~i~~~~~~~~-~-~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGL-REGDVVAILLENNPEF-F-EVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKV 86 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEeCCCHHH-H-HHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCE
Confidence 358888888877665554 457 8899999988877533 3 338999999999998877665688889999999999
Q ss_pred EEechHHHHHH
Q psy2835 260 FLAVPRVWEKI 270 (305)
Q Consensus 260 ~~~~P~~~~~l 270 (305)
+...+.....+
T Consensus 87 ii~~~~~~~~~ 97 (502)
T PRK08276 87 LIVSAALADTA 97 (502)
T ss_pred EEEccchhhHH
Confidence 99887766554
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=80.37 E-value=16 Score=33.85 Aligned_cols=85 Identities=7% Similarity=-0.001 Sum_probs=69.2
Q ss_pred EechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEec
Q psy2835 184 MLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
.+|++.+...+..+...+.- .++|++...+|-+.- ++..+++++..|+..+.++.....+.+...++..++..+...
T Consensus 45 ~~Ty~el~~~~~~lA~~L~~-~~gd~Val~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~ 121 (539)
T PRK06334 45 KLSYNQVRKAVIALATKVSK-YPDQHIGIMMPASAG--AYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTS 121 (539)
T ss_pred cccHHHHHHHHHHHHHHHhh-ccCCeEEEEcCCchH--HHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEeh
Confidence 48999999999888888766 688999988887653 334478999999999988776656889999999999999988
Q ss_pred hHHHHHHH
Q psy2835 264 PRVWEKIH 271 (305)
Q Consensus 264 P~~~~~l~ 271 (305)
...+..+.
T Consensus 122 ~~~~~~~~ 129 (539)
T PRK06334 122 KQLMQHLA 129 (539)
T ss_pred HHHHHHHh
Confidence 77666553
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=80.37 E-value=39 Score=30.99 Aligned_cols=97 Identities=8% Similarity=0.016 Sum_probs=72.0
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. ++-.+|+..+...+..+...+ ++ ..+|++...++-.- .....+++.+..|+..+..
T Consensus 16 ~p~~~a~~~---------~~~~~ty~el~~~~~~la~~L~~~g~-~~~~~v~v~~~n~~--~~~~~~~a~~~~G~~~v~l 83 (533)
T PRK07798 16 VPDRVALVC---------GDRRLTYAELEERANRLAHYLIAQGL-GPGDHVGIYARNRI--EYVEAMLGAFKARAVPVNV 83 (533)
T ss_pred CCCceEEEE---------CCceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCH--HHHHHHHHHHhcCeEEEec
Confidence 456777654 234699999888777665554 56 78898888876654 3344478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+....++.+...+++.++..++..+.....+.
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 115 (533)
T PRK07798 84 NYRYVEDELRYLLDDSDAVALVYEREFAPRVA 115 (533)
T ss_pred CcCCCHHHHHHHHhhcCCCEEEEchhhHHHHH
Confidence 87766788889999999999988876655543
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.09 E-value=33 Score=32.72 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.... .| ....+|++.+...+..+...+ ++ .++|++...+|-.-- .+..+++++..|+..+.+
T Consensus 97 ~~~~~Al~~~~~--~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~v~~~lA~~~~Gav~v~l 169 (655)
T PRK03584 97 RDDRPAIIFRGE--DG--PRRELSWAELRRQVAALAAALRALGV-GPGDRVAAYLPNIPE--TVVAMLATASLGAIWSSC 169 (655)
T ss_pred CCCCeEEEEECC--CC--ceEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCcEEEee
Confidence 456777654322 22 235799999998877665554 67 889999999987653 334488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.....++.+...++..++.++.....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (655)
T PRK03584 170 SPDFGVQGVLDRFGQIEPKVLIAVDG 195 (655)
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEccc
Confidence 77666788999999999999887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 305 | ||||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-04 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 2e-04 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-04 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 4e-04 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-04 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-04 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-04 |
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 5/201 (2%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y++ + L KA GL + + N E+F + ++ G A +
Sbjct: 55 YAEYLE-KSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
+H L S I L+K++ V+ +K IV + K D G D ++
Sbjct: 114 RELVHSLGISKPTIVFSSKK-GLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKR 172
Query: 147 GRAAPDESLD-RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE- 204
++ + +E + ++ +SG+ G K V L+H+NI +
Sbjct: 173 NTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ 232
Query: 205 -SAALSVISFLPLSHIAAQTV 224
S +V++ +P H
Sbjct: 233 VSPGTAVLTVVPFHHGFGMFT 253
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 8e-26
Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 5/207 (2%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y++ + LA+A + GL H + + N+ ++F LGA++ G A +
Sbjct: 53 YAEYFE-MSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
L+ + S + V L+KIL V+ + P ++ I+ + K D G S +
Sbjct: 112 RELLNSMNISQPTVVFVSKK-GLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 170
Query: 147 GRAAPDESLDRVLETIATNE-CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ--YFKL 203
D V E+ ++ ++ +SG+ G K V L H + +
Sbjct: 171 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 230
Query: 204 ESAALSVISFLPLSHIAAQTVDIYSVM 230
+++S +P H + ++
Sbjct: 231 IIPDTAILSVVPFHHGFGMFTTLGYLI 257
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 1e-23
Identities = 49/239 (20%), Positives = 97/239 (40%), Gaps = 17/239 (7%)
Query: 3 AFLKLGLERY-HSVCII-GFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA 60
+++ L + C+I G N + Y+D+ A +A K+G+++ + + ++
Sbjct: 26 SYVLENLSNHSSKPCLINGANGDVYTYADVEL-TARRVASGLNKIGIQQGDVIMLFLPSS 84
Query: 61 PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP 120
PE+ + LGA + G ++P S A + + + EK+ +
Sbjct: 85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQAC-YYEKVKDFARESD 143
Query: 121 KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 180
+K + + PD G + + EL + + I+ ++ L Y+SGT G
Sbjct: 144 -VKVMC-VDSAPD--GCLHFSELTQADENEAPQ------VDISPDDVVALPYSSGTTGLP 193
Query: 181 KPVMLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQTVDIYSVMTVAATL 236
K VML+H + + A + S ++ LP+ HI A + + V A +
Sbjct: 194 KGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPI 252
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 3e-23
Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 17/255 (6%)
Query: 15 VCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74
I Y +L A A A LG+ + ++ + + LGA+YAG
Sbjct: 40 TAYIDDTG-STTYGELEE-RARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAG 97
Query: 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKA--IVQYEGKP 132
T +P ++ L S A + ++ + + IV +
Sbjct: 98 VVPVVANTLLTPADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRES 156
Query: 133 DKPGVISWDELMELGRAAPDESLDRVLETIAT--NECCTLVYTSGTEGASKPVMLSHDNI 190
+ ++EL++ AA + AT ++ +Y+SG+ G K + +H N+
Sbjct: 157 EPRLAPLFEELID---AAAPA-----AKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANL 208
Query: 191 TFNAACIIQY-FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLI 249
+ A + + + V S L + ++V AT + ++
Sbjct: 209 YWTAELYAKPILGIAENDV-VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIF 267
Query: 250 NTLLEVRPHVFLAVP 264
L+E RP VF VP
Sbjct: 268 ARLVEHRPTVFYGVP 282
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 6e-23
Identities = 55/242 (22%), Positives = 96/242 (39%), Gaps = 17/242 (7%)
Query: 4 FLKLGLERY-HSVCII-GFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAP 61
++ + + C+I G + YSD+ I +A F KLG+ + V ++ N P
Sbjct: 66 YIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQ-IAANFHKLGVNQNDVVMLLLPNCP 124
Query: 62 EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP- 120
E+ S L A + G A +P S+ + + E ++KI ++
Sbjct: 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEAR-YVDKIKPLQNDDGV 183
Query: 121 KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 180
+ I E P G + + EL + A + I+ ++ L Y+SGT G
Sbjct: 184 VIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS---VEISPDDVVALPYSSGTTGLP 240
Query: 181 KPVMLSHDNITFNAACIIQYFKLESAALS------VISFLPLSHIAAQTVDIYSVMTVAA 234
K VML+H + + Q E+ L ++ LP+ HI A + + V A
Sbjct: 241 KGVMLTHKGLV---TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA 297
Query: 235 TL 236
+
Sbjct: 298 AI 299
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 1e-22
Identities = 56/258 (21%), Positives = 93/258 (36%), Gaps = 24/258 (9%)
Query: 13 HSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIY 72
H + I + Y++L A AG +A + GL+ V + E L +
Sbjct: 17 HKLAIETAAGDKISYAELVA-RAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVR 75
Query: 73 AGGFAA---GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 129
AGG YT E + + ++ I V D + + I + A+ +
Sbjct: 76 AGGVYLPLNTAYTL--HELD-YFITDAEPKIVVC-DPSKRDGIAAIAAKVGATVETL--- 128
Query: 130 GKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN 189
G S + A ++ ++YTSGT G SK MLSHDN
Sbjct: 129 ---GPDGRGSLTDAAAGASEAFAT------IDRGADDLAAILYTSGTTGRSKGAMLSHDN 179
Query: 190 ITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLI 249
+ N+ ++ Y++ +I LP+ H V + ++ F K L
Sbjct: 180 LASNSLTLVDYWRFTPDD-VLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL- 237
Query: 250 NTLLEVRPHVFLAVPRVW 267
L+ R V + VP +
Sbjct: 238 -DLMA-RATVLMGVPTFY 253
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 7e-21
Identities = 32/245 (13%), Positives = 73/245 (29%), Gaps = 17/245 (6%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ D A A LA L+ G+ V I+ N E G +
Sbjct: 31 RLTHRDYLAR-AERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
+ + L ++ V D + + V +K +
Sbjct: 90 LNADEIAFVLGDGAPSVVVAGTD-YRDIVAGVLPSLGGVKKAYAIGDGSG-----PFAPF 143
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 203
+L P + + +++T+ G + ++S N+ + ++ ++L
Sbjct: 144 KDLASDTPFSAPEFGAADGFV-----IIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRL 198
Query: 204 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKGSLINTLLEVRPHVFLA 262
A +++ LPL H+ + + ++ A K + + + V
Sbjct: 199 TEADVNLGM-LPLFHVTGLGL-MLTLQQAGGASVIAAKFDP--AQAARDIEAHKVTVMAE 254
Query: 263 VPRVW 267
+
Sbjct: 255 FAPML 259
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 44/238 (18%), Positives = 77/238 (32%), Gaps = 16/238 (6%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
+ ++ LA + G+ + V + N+ ++ + +
Sbjct: 55 FLEICE-VTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKS 113
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
H L S+A VV E V + + V V S E+M+
Sbjct: 114 FELEHILNDSEATTLVVHSM-LYENFKPVLEKTGVERVFV------VGGEVNSLSEVMDS 166
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
G + E +A + YT GT G K VML+H N+ NA + L
Sbjct: 167 GSEDFENVKVNPEEDVAL-----IPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM 221
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVP 264
+++ +P+ H A + V V + L + + + AVP
Sbjct: 222 D-TIVGCMPMFHSAEFGLVNLMVT-VGNEYVVMGMFNQEM-LAENIEKYKGTFSWAVP 276
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 7e-20
Identities = 53/252 (21%), Positives = 96/252 (38%), Gaps = 19/252 (7%)
Query: 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76
+ Y+ + A A A LG+ + V ++ N+ E+ GA G
Sbjct: 36 VEPSTDVRMTYAQMNA-LANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV 94
Query: 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG 136
A + T + L S + + + I ++AQ + + G
Sbjct: 95 AVPINTRLAAPEVSFILSDSGSKVVIYGAP-SAPVIDAIRAQADPPGTVTDWIG------ 147
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 196
D L E R+A D ++ ++YTSGT G K V+ +H+++ A+
Sbjct: 148 ---ADSLAERLRSAAA---DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS 201
Query: 197 IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKGSLINTLLEV 255
+ ++ LP+ H+AA T I+S M TL + +A + + ++E
Sbjct: 202 WASTIDVRYRDRLLLP-LPMFHVAALTTVIFSAM-RGVTLISMPQFDA--TKVWSLIVEE 257
Query: 256 RPHVFLAVPRVW 267
R + AVP +
Sbjct: 258 RVCIGGAVPAIL 269
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 34/256 (13%), Positives = 73/256 (28%), Gaps = 27/256 (10%)
Query: 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76
+ +++L A +A GL V ++ N+ + + L G
Sbjct: 22 AVPARGLRLTHAELRA-RVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80
Query: 77 AA---GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD 133
A S E + + V+ +Q+ + Q I+
Sbjct: 81 PALLNPRLK--SAEL-AELIKRGEMTAAVIAVGRQVADAI---FQSGSGARIIFLGDLVR 134
Query: 134 KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 193
S+ +E + P + + YTSGT G K ++
Sbjct: 135 DGEPYSYGPPIEDPQREPAQ-------------PAFIFYTSGTTGLPKAAIIPQRAAESR 181
Query: 194 AACIIQYFKLESAALSVI-SFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKGSLINT 251
+ L +V+ +PL H+ + + + + T ++ +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRP--VDALQL 239
Query: 252 LLEVRPHVFLAVPRVW 267
+ + + A P
Sbjct: 240 VQQEQVTSLFATPTHL 255
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 1e-17
Identities = 43/246 (17%), Positives = 86/246 (34%), Gaps = 11/246 (4%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ Y +L A LAK L + V + N+ + A A + T
Sbjct: 26 SYTYQNLYC-EASLLAKR---LKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 84 NSPEACLHCLVTSDANICVVEDD-KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 142
+P + + + D + + + + G D I +D
Sbjct: 82 LTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT 141
Query: 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK 202
E + + + + ++ ++++TSGT G K V + N +A +
Sbjct: 142 SNETVVPK-ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLG 200
Query: 203 LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKGSLINTLLEVRPHVFL 261
+ + +S LP+ HI+ +V + +V+ T+ DK NA ++ + R
Sbjct: 201 FDRDT-NWLSVLPIYHISGLSVLLRAVI-EGFTVRIVDKFNA--EQILTMIKNERITHIS 256
Query: 262 AVPRVW 267
VP+
Sbjct: 257 LVPQTL 262
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 42/247 (17%), Positives = 84/247 (34%), Gaps = 43/247 (17%)
Query: 27 YSDLGAI---YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
Y++L A AG + A R V + A E + + A+ AG A +
Sbjct: 51 YAELAAAAGATAGRIGGA------GR---VAVWATPAMETGVAVVAALLAGVAAVPLNPK 101
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
+ + H L S ++ + D +L P G + ++
Sbjct: 102 SGDKELAHILSDSAPSLVLAPPDAEL----------------------PPALGALERVDV 139
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 203
R A E + + +VYTSGT G K ++ + + ++
Sbjct: 140 DVRARGAVPE------DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQW 193
Query: 204 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAV 263
+ ++ LPL H+ + I + ++ + + +G+ L + V
Sbjct: 194 -TGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAA--RELNDGATMLFGV 250
Query: 264 PRVWEKI 270
P ++ +I
Sbjct: 251 PTMYHRI 257
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 5e-17
Identities = 41/226 (18%), Positives = 83/226 (36%), Gaps = 27/226 (11%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
W Y +L A LA F KLG+++ V + N E+F G A
Sbjct: 50 HWSYRELDT-RADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLG---ALPVFA 105
Query: 84 N----SPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKP 135
S E + ++A ++ D +V+++ P LK I+ G+
Sbjct: 106 LPSHRSSEI-TYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII-VAGEA--E 161
Query: 136 GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 195
+ ++L P+ V L + G+ G SK + +HD+ ++
Sbjct: 162 EFLPLEDLHTEPVKLPEVKSSDV---------AFLQLSGGSTGLSKLIPRTHDDYIYSLK 212
Query: 196 CIIQYFKLESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFAD 240
++ L+ + + + + LP++H + + V+ + +
Sbjct: 213 RSVEVCWLDHSTVYLAA-LPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 25/228 (10%), Positives = 67/228 (29%), Gaps = 27/228 (11%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG---FAAGM 80
+ Y +L A LA + + G++ + + N E + + + G A
Sbjct: 50 QLSYRELNQ-AADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFS 108
Query: 81 YTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPG 136
+ E + + + + + + + ++ + G
Sbjct: 109 HQ--RSEL-NAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND----SG 161
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 196
+ + + +E + GT G K + +H++ ++
Sbjct: 162 EHNLQDAINHPAEDFTA------TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR 215
Query: 197 IIQYFKL--ESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFADK 241
++ + ++ L +P +H A + V T+ A
Sbjct: 216 SVEICQFTQQTRYLCA---IPAAHNYAMSSPGSLGVFLAGGTVVLAAD 260
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 23/226 (10%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ Y +L + LA + GL + + + N E++ + AG +
Sbjct: 55 QLSYIELDR-LSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG---VVVLNA 110
Query: 84 N----SPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKP 135
E + + + + + I + + I+ +
Sbjct: 111 LYSHRQYEL-NAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDF 169
Query: 136 GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 195
G++ W E + +E + G+ G K + +H++ ++
Sbjct: 170 GLLDWIET--------PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVR 221
Query: 196 CIIQYFKLESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFAD 240
+ L S + + LP H + V+ + A
Sbjct: 222 ASAEICGLNSNTRLLCA-LPAPHNFMLSSPGALGVLHAGGCVVMAP 266
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 14/167 (8%)
Query: 24 EWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82
W + +L + A GL+R V ++ PEW+ LG I AG
Sbjct: 73 MWNFRELSE-NSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTI 131
Query: 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 142
L+ L S A +V D+ ++++ V ++CP L+ + K G +++ +
Sbjct: 132 QMKSTDILYRLQMSKAK-AIVAGDEVIQEVDTVASECPSLRIKLLVSEKS-CDGWLNFKK 189
Query: 143 LMELGRAAPDESLDRVLETIAT--NECCTLVYTSGTEGASKPVMLSH 187
L+ A + T E + +TSGT G K S+
Sbjct: 190 LLN---EASTT-----HHCVETGSQEASAIYFTSGTSGLPKMAEHSY 228
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-12
Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 4/165 (2%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ + DL Y+ A F+K G+ + V + + +++Y LG G A
Sbjct: 86 IFTFKDLKY-YSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHM 144
Query: 84 NSPEACLHCLVTSDANICVVEDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 142
++ + + + V + + E++ + A+C + G G I + +
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRK 204
Query: 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
+E ++P + + C + ++SGT G K V +
Sbjct: 205 ELE--ESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 7e-09
Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 40/213 (18%)
Query: 68 LGAIYAGGFAAGMYTTNSPEACLH-CLVTSDAN-ICVVEDDKQLEKILKVKAQCPKLKAI 125
LGA+ AG A + V SD++ + ++ ++ +++ A+ P
Sbjct: 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESP- 158
Query: 126 VQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVML 185
P +I D L D + L YTSG+ V++
Sbjct: 159 ---------PSIIEVDLL------DLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVM 203
Query: 186 SHDNITFNAACIIQYFKLESAALS-----VISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
SH N+ N ++ + ++ + ++S+LP H + I + +
Sbjct: 204 SHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVL-- 261
Query: 241 KNALKGSLINTLLEVRPHVFLAVPRVW-EKIHE 272
P FL P W +
Sbjct: 262 --------------TSPVSFLQRPARWMHLMAS 280
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 7e-08
Identities = 53/259 (20%), Positives = 100/259 (38%), Gaps = 31/259 (11%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAP---EWFY--SDLGAIYAGGFAAGMYTTN---SPEAC 89
L LG+ V +GFN E ++ +GA+ ++T N SP+
Sbjct: 60 LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAV--------LHTANPRLSPKEI 111
Query: 90 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 149
+ L ++ + + D L + ++ + ++ V + G ++++E LG
Sbjct: 112 AYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVM-DEKAPEGYLAYEEA--LGEE 167
Query: 150 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA--ACIIQYFKLESAA 207
A + E C + YT+GT G K V+ SH + ++ A ++ L S
Sbjct: 168 ADPVRVP---E----RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL-SEK 219
Query: 208 LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVW 267
V+ +P+ H+ A + Y+ V A SL+ VP VW
Sbjct: 220 DVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 278
Query: 268 EKIHEKLMAVGKQTTGVKR 286
+ + L + G + ++R
Sbjct: 279 LALADYLESTGHRLKTLRR 297
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-08
Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 25/197 (12%)
Query: 27 YSDLGA---IYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
Y L A L K G +R V ++ + LG +YAG A +Y
Sbjct: 43 YEQLDQHAKAIAATLQAEGAKPG-DR---VLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98
Query: 84 NSPEAC--LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWD 141
+ +VT+ + V+ ++K + K K I+ +
Sbjct: 99 AQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNT---------NPKFLKIPAIALE 149
Query: 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 201
+ ++ +I +N+ L YTSG+ K VM+SH N+ N I F
Sbjct: 150 SIELNRSSSWQ------PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF 203
Query: 202 KLESAALSVISFLPLSH 218
+ + S+LP H
Sbjct: 204 HMNDETIIF-SWLPPHH 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.87 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.79 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.75 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.75 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.74 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 94.29 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 94.27 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 94.23 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 91.06 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 90.81 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 90.42 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 89.89 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 89.2 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 88.28 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 88.01 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 87.65 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 87.59 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 87.18 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 87.03 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 86.95 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 86.38 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 85.12 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 85.09 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 85.03 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 84.47 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 83.86 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 83.78 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 83.68 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 82.85 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 82.49 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 81.34 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 80.5 |
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=320.27 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=235.0
Q ss_pred hHHHHHHHhcccceeee----ccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIG----FNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
++|++.++++|+..++. ..++++||+||.++ ++++|++|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus 22 ~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 100 (541)
T 1v25_A 22 DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQR-ARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLH 100 (541)
T ss_dssp HHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCCCceEEEEecCCCCceecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEE
Confidence 67888999999988876 34578999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 79 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 79 ~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
|+++.++.+++.+++++++++++|++.+. .+.+.++....+..+.++.+++... .+...++++...... .
T Consensus 101 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~----- 170 (541)
T 1v25_A 101 TANPRLSPKEIAYILNHAEDKVLLFDPNL-LPLVEAIRGELKTVQHFVVMDEKAP-EGYLAYEEALGEEAD---P----- 170 (541)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHGGGCSSCCEEEESSSCCC-TTCEEHHHHCCSCCC---C-----
T ss_pred ecCcccCHHHHHHHHHhCCCcEEEEChhH-HHHHHHHHhhCCCccEEEEecCCCC-cccccHHHHhhccCC---c-----
Confidence 99999999999999999999999999874 4666666666666777776654321 133456555432211 0
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHH--HHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
....++++++|+|||||||.||||++||+++..+.... ...+++ +++|++++.+|++|.+++.. ++.++..|+++
T Consensus 171 -~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~ 247 (541)
T 1v25_A 171 -VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL-SEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQ 247 (541)
T ss_dssp -CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCC-CTTCEEEECSCTTSHHHHTH-HHHHHHHTCEE
T ss_pred -ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccC-CCCCEEEEeccchhhhHHHH-HHHHHhcCceE
Confidence 13456899999999999999999999999998776552 345567 88999999999999998754 78899999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
++.+...++..+++.++++++|++.++|+++..|++.......++++||.++++ ..+..|+++++.|
T Consensus 248 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~Y 324 (541)
T 1v25_A 248 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGY 324 (541)
T ss_dssp EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEE
T ss_pred EeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHHHHhCCceeecc
Confidence 998764458999999999999999999999999999887777778888754432 2245677766655
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=320.90 Aligned_cols=290 Identities=11% Similarity=0.112 Sum_probs=235.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 34 ~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 34 RILTVGVQSHPHSLAIICGERQLSYIELDRL-STNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALY 112 (544)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCT
T ss_pred HHHHHHHHhCCCceEEEcCCCceeHHHHHHH-HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCC
Confidence 6789999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
.++.+++.++++++++++++++.... ......+.........++..+... ....+.++..........
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----- 184 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA---TDFGLLDWIETPAETFVD----- 184 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT---TSEEHHHHHHSCCSSCCC-----
T ss_pred CCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc---cccchhhhhhcccccccc-----
Confidence 99999999999999999999987531 123334444455556666554431 222344444432221111
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.....++++++|+|||||||.||||++||+++..++......+++ .++|++++.+|++|.+++.. .++.++..|++++
T Consensus 185 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 185 FSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGL-NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCC-CCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 013467999999999999999999999999999999998888999 99999999999999998865 5889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+.++ +..+++.++++++|++.++|+++..+++.......++++||.++++ +...+|+++++.|
T Consensus 264 ~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~Y 339 (544)
T 3o83_A 264 MAPNPE-PLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVF 339 (544)
T ss_dssp ECSSCC-HHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEE
T ss_pred ECCCCC-HHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeee
Confidence 998876 7999999999999999999999999999876666677777755432 2333566666554
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=321.85 Aligned_cols=286 Identities=15% Similarity=0.191 Sum_probs=233.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|++|
T Consensus 29 ~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~ 107 (539)
T 1mdb_A 29 DLLRDRAAKYGDRIAITCGNTHWSYRELDTR-ADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALP 107 (539)
T ss_dssp HHHHHHHHHHTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCT
T ss_pred HHHHHHHHHCCCCEEEEeCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCC
Confidence 5788899999998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
.++.+++.+++++++++++++++... ...+..+....+..+.++..++.. .+.++.........
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------ 175 (539)
T 1mdb_A 108 SHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------EFLPLEDLHTEPVK------ 175 (539)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------TSEEGGGCCCCCCC------
T ss_pred CCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc------chhhhhhccccccc------
Confidence 99999999999999999999987521 123333444455555555443221 12222111111000
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.....++++++|+|||||||.||||++||+++...+......+++ +++|++++.+|++|.+|+.. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWL-DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCC-CCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 013467899999999999999999999999999999888888888 99999999999999999865 6899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+.++ +..+++.++++++|++.++|+++..+++.......++++||.++++ +...+|+++++.|
T Consensus 255 ~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~Y 330 (539)
T 1mdb_A 255 LSPSPS-PDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVF 330 (539)
T ss_dssp ECSSSS-HHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEE
T ss_pred ECCCCC-HHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEE
Confidence 998765 7999999999999999999999999999887777788898866543 3333566665554
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=322.15 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=230.3
Q ss_pred hHHHHHHHhcccceeee-----ccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIG-----FNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~-----~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++|.+.++++|+..++. ..++++||+||.++ ++++|++|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus 24 ~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 102 (550)
T 3rix_A 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEM-SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAV 102 (550)
T ss_dssp HHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEE
Confidence 57888899999966653 24678999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHH
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
+|+++.++.+++.++++++++++++++.+. .+.+.+.....+....++.++......+..++.++..............
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (550)
T 3rix_A 103 APANDIYNERELLNSMNISQPTVVFVSKKG-LQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF 181 (550)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGGG-HHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTTC
T ss_pred eecCCcCCHHHHHHHHHhcCCeEEEEcHHH-HHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhcccccccccccc
Confidence 999999999999999999999999999874 5777777777788888887776544456677777775533211110000
Q ss_pred -hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhC
Q psy2835 158 -VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVA 233 (305)
Q Consensus 158 -~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G 233 (305)
......++++++|+|||||||.||||++||+++...+...... .++ .++|++++.+|++|.+|+.. ++.++..|
T Consensus 182 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~~~-~~~~l~~G 259 (550)
T 3rix_A 182 VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI-IPDTAILSVVPFHHGFGMFT-TLGYLICG 259 (550)
T ss_dssp CCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHHHH-HHHHHHHT
T ss_pred CCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccC-CCCcEEEEechHHHHHHHHH-HHHHHHcC
Confidence 0012245789999999999999999999999999887766554 456 78999999999999999754 78899999
Q ss_pred cEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 234 ATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 234 ~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+++++.+.++ +..+++.++++++|++.++|+++..|++.......++++||.++++
T Consensus 260 ~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 315 (550)
T 3rix_A 260 FRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASG 315 (550)
T ss_dssp CEEEECSSCC-HHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEEC
T ss_pred CEEEEeCCCC-HHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEe
Confidence 9999998766 7999999999999999999999999998776677778888865543
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=317.39 Aligned_cols=284 Identities=17% Similarity=0.163 Sum_probs=227.7
Q ss_pred hHHHHHHHhcccceeeeccCC--ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFNAP--EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~--~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+.++ ++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 20 ~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNAL-ANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHH-HHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 678899999999888877666 8999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
++.++.+++.++++++++++++++... ...+..+....+....++... ....+.+........... .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~------~ 165 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPS-APVIDAIRAQADPPGTVTDWI------GADSLAERLRSAAADEPA------V 165 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHHHSSSCCTTCCEEE------EHHHHHHHHHHCCCCCCC------C
T ss_pred CcccCHHHHHHHHHhcCceEEEECCch-HHHHHHHHhccCCccEEEEcc------CcccHHHHhhccCcCCCC------C
Confidence 999999999999999999999999874 455555544443322222111 112234444332211111 2
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
...++++++|+|||||||.||||++||+++...+......+++ +++|++++.+|++|.+|+... +.++..|+++++.+
T Consensus 166 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~-~~~~~~G~~~v~~~ 243 (517)
T 3r44_A 166 ECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDV-RYRDRLLLPLPMFHVAALTTV-IFSAMRGVTLISMP 243 (517)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCC-CTTCEEEECSCTTSHHHHHHH-HHHHHHTCEEEECS
T ss_pred CCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCC-CCCCEEEEeCchHHHHHHHHH-HHHHhcCeEEEEeC
Confidence 3467999999999999999999999999999999998888899 999999999999999998664 44455999999998
Q ss_pred CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
.++ +..+++.++++++|++.++|+++..|.+.+.....++++||.++++ +..+.|+++++.|
T Consensus 244 ~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~Y 315 (517)
T 3r44_A 244 QFD-ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGY 315 (517)
T ss_dssp SCC-HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEE
T ss_pred CCC-HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEee
Confidence 766 7999999999999999999999999999888877888888755443 3333466666555
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=307.26 Aligned_cols=269 Identities=17% Similarity=0.176 Sum_probs=228.5
Q ss_pred hHHHHHHHhcccceeeeccC--------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC
Q psy2835 3 AFLKLGLERYHSVCIIGFNA--------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~--------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G 74 (305)
++|++.++++|+..++.+.+ +++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 23 ~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 101 (549)
T 3g7s_A 23 DRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEV-TKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVA 101 (549)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 67899999999988887766 78999999996 9999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCch
Q psy2835 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDES 154 (305)
Q Consensus 75 ~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 154 (305)
++++|++|.++.+++.++++++++++++++... .+.+.......+ ...++..+. ....+.++..........
T Consensus 102 ~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~- 173 (549)
T 3g7s_A 102 ATPVPINPMYKSFELEHILNDSEATTLVVHSML-YENFKPVLEKTG-VERVFVVGG-----EVNSLSEVMDSGSEDFEN- 173 (549)
T ss_dssp CEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGG-HHHHHHHHTTSC-CCEEEEETC-----SSSCHHHHHHHSCSCCCC-
T ss_pred CEEEccCCCCCHHHHHHHHHhcCCCEEEEChHH-HHHHHHHHhhCC-CcEEEEeCC-----CCcCHHHHHhcCcccccc-
Confidence 999999999999999999999999999999874 466666555544 445554442 344577776654322111
Q ss_pred hHHhhhccC-CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhC
Q psy2835 155 LDRVLETIA-TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVA 233 (305)
Q Consensus 155 ~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G 233 (305)
.... ++++++|+|||||||.||||++||+++..++......+++ .++|++++.+|++|.+++.. ++.++..|
T Consensus 174 -----~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~~~~~-~~~~l~~G 246 (549)
T 3g7s_A 174 -----VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGL-SHMDTIVGCMPMFHSAEFGL-VNLMVTVG 246 (549)
T ss_dssp -----CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCC-CTTCEEECCSCTTSHHHHHH-HTTHHHHC
T ss_pred -----ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCC-CCCCEEEEeCcHHHHHHHHH-HHHHHhcC
Confidence 1223 3899999999999999999999999999999998888999 99999999999999999877 88899999
Q ss_pred cEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh--cccChHHHHH
Q psy2835 234 ATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG--KQTTGVKRWI 288 (305)
Q Consensus 234 ~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~sl~~~~ 288 (305)
+++++.+.++ +..+++.++++++|++.++|+++..|++...... .+++++|.++
T Consensus 247 ~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~ 302 (549)
T 3g7s_A 247 NEYVVMGMFN-QEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFA 302 (549)
T ss_dssp CEEEEESSCC-HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEE
T ss_pred ceEEEcCCCC-HHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEE
Confidence 9999998766 7999999999999999999999999999877655 5677776543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=313.98 Aligned_cols=280 Identities=15% Similarity=0.201 Sum_probs=222.2
Q ss_pred HHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 4 FLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 4 ~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++.+.++++ +..++.+ .++++||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 31 ~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 31 KYMERYAKL-GAIAFTNAVTGVDYSYAEYLEK-SCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHHHHHHH-TCEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred HHHhhhccc-CCceEEEcCCCCEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 566667777 7666655 5689999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+.++.+++.+++++++++++|++... .+.+.++...++....++.+++.....+...++++..................
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKG-LDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVE 187 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTT-HHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGGGCCCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHH-HHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcccccccc
Confidence 99999999999999999999999874 45555555455545556655543211224457777654321101100000000
Q ss_pred c-CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 I-ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~-~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
. .++++++|+|||||||.||||++||+++...+...... +++ +++|++++.+|++|.+|+...++.++ .|++++
T Consensus 188 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v 265 (548)
T 2d1s_A 188 VDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV-SPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVV 265 (548)
T ss_dssp CCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEE
T ss_pred cCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCC-CccceEEEeccHHHHHHHHHHHHHHh-cCcEEE
Confidence 0 23899999999999999999999999999988776665 567 88999999999999999876567777 999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
+.+.++ +..+++.++++++|+++++|+++..|.+.......++++||.+++
T Consensus 266 ~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~ 316 (548)
T 2d1s_A 266 MLTKFD-EETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS 316 (548)
T ss_dssp ECCCCC-HHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEE
T ss_pred EcCCCC-HHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEE
Confidence 998765 799999999999999999999999998865555567788775544
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=317.46 Aligned_cols=274 Identities=19% Similarity=0.264 Sum_probs=224.8
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++.+.++++|+..++.+. ++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 26 ~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 26 SYVLENLSNHSSKPCLINGANGDVYTYADVELT-ARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp HHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHhhcCCCceEEEECCCCCEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 5677888999998777664 678999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
+|.++.+++.++++++++++++++... .+.+.+..... .. .++.++... .+...++++.......... .
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~ 173 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACY-YEKVKDFARES-DV-KVMCVDSAP--DGCLHFSELTQADENEAPQ------V 173 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGG-THHHHHHHHHH-TC-EEEESSCCC--TTCEETHHHHTSCGGGCCC------C
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHH-HHHHHHHHhhc-Cc-eEEEecCCC--CCccCHHHHhhcccccccc------C
Confidence 999999999999999999999999874 34444443222 22 344444322 3445566666433211111 2
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
...++++++|+|||||||.||||++||+++...+..... .+++ .++|++++.+|++|.+|+...++.++..|+++
T Consensus 174 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 252 (536)
T 3ni2_A 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIMLCGLRVGAPI 252 (536)
T ss_dssp CCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCC-CTTCCEEECSCTTSHHHHHHTHHHHHHHTCCE
T ss_pred CCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccC-CCCCEEEEecChHHHHHHHHHHHHHHhcCCEE
Confidence 346799999999999999999999999999988766543 3456 88999999999999999977789999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++.+.++ +..+++.++++++|++.++|+++..+++.......++++||.++++
T Consensus 253 v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 253 LIMPKFE-IGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSG 305 (536)
T ss_dssp EECSSCC-HHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEE
T ss_pred EEcCCCC-HHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEEC
Confidence 9998776 6999999999999999999999999998776677788888765443
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=318.68 Aligned_cols=278 Identities=13% Similarity=0.140 Sum_probs=224.2
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
++|++.++++|+..++.+ .++++||+||.++ ++++|+.|+ ++|+++||+|+++++|+++++++++||+++|+
T Consensus 86 ~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~-v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Ga 164 (663)
T 1ry2_A 86 NCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEE-VCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 164 (663)
T ss_dssp HHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHH-HHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 567788888999777765 2367999999996 999999999 99999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChHH--------HHHHHHHhccCCCccEEEEccCCCC------CCCcccHH
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCPKLKAIVQYEGKPD------KPGVISWD 141 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~ 141 (305)
+++|+++.++.+++.+++++++++++|+++... ...+.+....++.++.+++++.... ......|+
T Consensus 165 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 244 (663)
T 1ry2_A 165 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWA 244 (663)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHH
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHH
Confidence 999999999999999999999999999987521 2345555566666777776654321 12234577
Q ss_pred HHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHH-HHHHhhccCCCCceEEEeCchhHHH
Q psy2835 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-CIIQYFKLESAALSVISFLPLSHIA 220 (305)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~l~~~pl~~~~ 220 (305)
++.......... ....++++++|+|||||||+||||++||.++..+.. .....+++ .++|++++..|++|+.
T Consensus 245 ~~~~~~~~~~~~------~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~ 317 (663)
T 1ry2_A 245 TEKKKYKTYYPC------TPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT-HQEDVFFTAGDIGWIT 317 (663)
T ss_dssp HHHTTSCSCCCC------CCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC-CSSCEEEECSCTTSHH
T ss_pred HHHhhcCCCCCc------cccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC-CCCcEEEEcCCcHHhh
Confidence 766533211111 134579999999999999999999999999887664 34556788 8999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHH
Q psy2835 221 AQTVDIYSVMTVAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWI 288 (305)
Q Consensus 221 g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~ 288 (305)
|..+.++.++..|+++++.+.. .++..+++.|++++||+++++|++++.|.+... ....++++||.++
T Consensus 318 g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~ 390 (663)
T 1ry2_A 318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLG 390 (663)
T ss_dssp HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEE
T ss_pred hhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEE
Confidence 9877789999999999998752 347899999999999999999999999987543 2345678887543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=317.92 Aligned_cols=279 Identities=15% Similarity=0.202 Sum_probs=221.8
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
++|++.++++|+..++.+ .++++||+||.++ ++++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 80 ~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~-v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav 158 (652)
T 1pg4_A 80 NCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRD-VCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158 (652)
T ss_dssp HHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred HHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcE
Confidence 456677778899777765 2368999999996 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHH--------HHHHHHHhccCC--CccEEEEccCCCCC-----CCcccHH
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCP--KLKAIVQYEGKPDK-----PGVISWD 141 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~~--~~~~~i~~~~~~~~-----~~~~~~~ 141 (305)
++|+++.++.+++.+++++++++++|+++... ...+.+.....+ .+..+++++..... .....|+
T Consensus 159 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 238 (652)
T 1pg4_A 159 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWR 238 (652)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHH
T ss_pred EEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHH
Confidence 99999999999999999999999999987521 133444444332 45566666532211 1234577
Q ss_pred HHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHH-HHHHhhccCCCCceEEEeCchhHHH
Q psy2835 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-CIIQYFKLESAALSVISFLPLSHIA 220 (305)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~l~~~pl~~~~ 220 (305)
++.......... ....++++++|+|||||||+||||++||+++..+.. .....+++ .++|++++..|++|..
T Consensus 239 ~~~~~~~~~~~~------~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~ 311 (652)
T 1pg4_A 239 DLIEKASPEHQP------EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY-HPGDIYWCTADVGWVT 311 (652)
T ss_dssp HHHTTSCSCCCC------CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHH
T ss_pred HHHhhcCCCCCc------cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCC-CCCCEEEEccCCeeee
Confidence 776543211111 134578999999999999999999999999987664 44556788 9999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHH
Q psy2835 221 AQTVDIYSVMTVAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIA 289 (305)
Q Consensus 221 g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~ 289 (305)
|+.+.++.++..|+++++.+.. .++..+++.+++++||+++++|++++.|++... ....++++||.+++
T Consensus 312 g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~ 385 (652)
T 1pg4_A 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGS 385 (652)
T ss_dssp HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEE
T ss_pred chHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEE
Confidence 9877789999999999998752 347899999999999999999999999988654 23456788875543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=302.24 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=218.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++||+.++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 10 ~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 10 DVYRRNAALFPDRTAFMVDGVRLTHRDYLAR-AERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp HHHHHHHHHSTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHHCCCceEEEECCcEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCC
Confidence 6789999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.+. .+.+.......+....++.+++.. ..+.++.......... ....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~ 157 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDY-RDIVAGVLPSLGGVKKAYAIGDGS-----GPFAPFKDLASDTPFS-----APEF 157 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTT-HHHHHHHGGGCSSCCEEEESSCCC-----SSCEEGGGTCCCSCCC-----CCCC
T ss_pred CCCHHHHHHHHHhcCceEEEECcch-hhhHHhhhcccCCceEEEEcCCCC-----cChhhHhhccCCCCCC-----cCCC
Confidence 9999999999999999999999874 355455556677777777665422 1122222211111111 1245
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||||++||+++...+......+++ +++|++++.+|++|.+|+.. .+.++..|++.++...+
T Consensus 158 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~-~~~~~~~~g~~~~~~~~ 235 (509)
T 3ivr_A 158 GAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRL-TEADVNLGMLPLFHVTGLGL-MLTLQQAGGASVIAAKF 235 (509)
T ss_dssp CTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSC
T ss_pred CccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCC-CCCcEEEEeCCCcchhHHHH-HHHHHHhCCcEEEeccc
Confidence 67999999999999999999999999999999998888999 99999999999999999876 45544555555555544
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW 287 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~ 287 (305)
+ +..+++.++++++|++.++|+++..|++.. ...+++++|.+
T Consensus 236 ~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~ 277 (509)
T 3ivr_A 236 D-PAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAV 277 (509)
T ss_dssp C-HHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEE
T ss_pred C-HHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhhee
Confidence 4 799999999999999999999999998865 44556666643
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=310.22 Aligned_cols=262 Identities=16% Similarity=0.198 Sum_probs=205.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++ +|++.++.+.++++||+||.++ ++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 28 ~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 28 YLFRLNET-RAGKTAYIDDTGSTTYGELEER-ARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp HHHHHTGG-GTTSEEEECSSCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCT
T ss_pred HHHHhhhc-cCCceEEEeCCCCccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCc
Confidence 56777778 9998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCc-cEEEEccCCCCC-CCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL-KAIVQYEGKPDK-PGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
.++.+++.++++++++++++++.+. .+.+.+.....+.. ..++..+..... .....++++.......... .
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 178 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGAL-VQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKA------A 178 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGG-HHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSC------C
T ss_pred ccCHHHHHHHHhccCCeEEEechhh-hhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccc------c
Confidence 9999999999999999999999874 45555554444444 444443332110 1123566665532211111 1
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHH-HHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNI-TFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
...++++++|+|||||||.||||++||+++ ..........+++ .++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI-AENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCC-CTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCC-CCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 346799999999999999999999999999 5555444445677 88999999999999999877778899999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 274 (305)
+...++..+++.++++++|++.++|+++..+++..
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP 292 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc
Confidence 54444799999999999999999999999998754
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=312.23 Aligned_cols=295 Identities=12% Similarity=0.118 Sum_probs=232.8
Q ss_pred hHHHHHHHhcccceeeec-----cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIGF-----NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~-----~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++|++.++++|+..++.+ .++++||+||.++ ++++|++|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus 60 ~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~-~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~ 138 (580)
T 3etc_A 60 DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYY-SDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIA 138 (580)
T ss_dssp HTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEE
Confidence 688999999999877765 2358999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHH-HHHHHHHhccCCCc-cEEEEccCCCCCCCcccHHHHHHhccCCCCchh
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQ-LEKILKVKAQCPKL-KAIVQYEGKPDKPGVISWDELMELGRAAPDESL 155 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 155 (305)
+|+++.++.+++.++++++++++++++.+.. .+.+.+....++.. ...+.+++. ...++..+.+...........+.
T Consensus 139 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 217 (580)
T 3etc_A 139 VPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLEGWIDFRKELEESSPIFERPT 217 (580)
T ss_dssp EECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCTTCEEHHHHHHHSCSCCCCCC
T ss_pred EeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-cccccccHHHHHhhCCcccccCc
Confidence 9999999999999999999999999987632 24455555555544 444444432 22456677777765433221110
Q ss_pred HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
......++++++|+|||||||.||+|.++|.++...+.......++ .+++++++..|++|..+....++.++..|++
T Consensus 218 --~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 218 --GEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNV-EDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp --GGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCC-CTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred --cccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCC-CCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 0123567999999999999999999999999999888776666778 8999999999999988876668899999999
Q ss_pred EEEeC-CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 236 LWFAD-KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 236 ~v~~~-~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+++.+ ...++..+++.++++++|+++++|++++.|.+. .....++++||.++++ +.+..|+++++.|
T Consensus 295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~Y 373 (580)
T 3etc_A 295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGF 373 (580)
T ss_dssp EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEeccc
Confidence 99884 333478999999999999999999999999874 2334567777754332 3344677777665
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=308.18 Aligned_cols=288 Identities=17% Similarity=0.185 Sum_probs=229.4
Q ss_pred hHHHHHHHh-----cccceeeecc-----CCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHH
Q psy2835 3 AFLKLGLER-----YHSVCIIGFN-----APEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAI 71 (305)
Q Consensus 3 ~~l~~~~~~-----~~~~~~~~~~-----~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~ 71 (305)
+++++.+++ +|+..++.+. ++++||+||.++ ++++|++|.+. |+++||+|+++++|+++++++++||+
T Consensus 42 ~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~-~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 120 (570)
T 3c5e_A 42 DVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSEN-SQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCI 120 (570)
T ss_dssp HTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHH-HHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHH-HHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 567788887 9997777652 368999999996 99999999998 99999999999999999999999999
Q ss_pred HcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 72 YAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 72 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
++|++++|+++.++.+++.+++++++++++|++.+. .+.+.++...++.++.++.+++.. ..+...++++........
T Consensus 121 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 198 (570)
T 3c5e_A 121 RAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEV-IQEVDTVASECPSLRIKLLVSEKS-CDGWLNFKKLLNEASTTH 198 (570)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTT-HHHHHHHGGGCTTCCEEEEESSSC-CTTSEEHHHHHHHSCSCC
T ss_pred HcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHH-HHHHHHHhhcCCceeEEEEecccC-ccccccHHHHhhcccccc
Confidence 999999999999999999999999999999999874 466666666677776666555421 134456777765433211
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHH--HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITF--NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~ 229 (305)
.. ....++++++|+|||||||.||||++||+ ++. ..... ..+++ .++|++++..|++|.+++...++.+
T Consensus 199 ~~------~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~-~~~d~~~~~~p~~~~~~~~~~~~~~ 269 (570)
T 3c5e_A 199 HC------VETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL-QASDIMWTISDTGWILNILCSLMEP 269 (570)
T ss_dssp CC------CCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC-CTTCEEEECCCTTSHHHHHHTTHHH
T ss_pred cc------cCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC-CCCceEEEcCchHHHHHHHHHHHHH
Confidence 11 13467899999999999999999999999 444 33333 56677 8999999999999999987678999
Q ss_pred HHhCcEEEEeCC-ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH-----------HHHHHhhh
Q psy2835 230 MTVAATLWFADK-NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA-----------NYAKSTSL 297 (305)
Q Consensus 230 l~~G~~~v~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~-----------~~a~~~g~ 297 (305)
+..|+++++.+. ..+|..+++.++++++|++.++|++++.|++. .....++++||.+++ .+...+|+
T Consensus 270 l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~ 348 (570)
T 3c5e_A 270 WALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ-DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGL 348 (570)
T ss_dssp HHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS-CTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC
T ss_pred HHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc-cccccccccceEEEEcCCcCCHHHHHHHHHHhCC
Confidence 999999999873 33479999999999999999999999999875 223345677664433 23444677
Q ss_pred HHHhhh
Q psy2835 298 QHYMAY 303 (305)
Q Consensus 298 ~~~~~~ 303 (305)
++++.|
T Consensus 349 ~i~~~Y 354 (570)
T 3c5e_A 349 DIRESY 354 (570)
T ss_dssp CCEEEE
T ss_pred chhhcc
Confidence 776665
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=309.71 Aligned_cols=286 Identities=11% Similarity=0.108 Sum_probs=229.5
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++ ||..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 31 ~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~ 107 (617)
T 3rg2_A 31 DILTRHAA--SDSIAVIDGERQLSYRELNQA-ADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALF 107 (617)
T ss_dssp HHHHTTTT--CCSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHhhC--CCCeEEecCCceEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCc
Confidence 45555555 888888889999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHH----HHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQL----EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
..+.+++.++++++++++++++..... ..........+....+...... ....+.+...........
T Consensus 108 ~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----- 178 (617)
T 3rg2_A 108 SHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS----GEHNLQDAINHPAEDFTA----- 178 (617)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC----STTBHHHHHHSCCSSCCC-----
T ss_pred cccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc----cccchhhhhcccccccCC-----
Confidence 999999999999999999999875321 2233333445555555544432 223344444432211111
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.+..++++++|+|||||||.||||+++|+++.+.+......+++ .++|++++.+|++|.+++.. .++.++..|++++
T Consensus 179 -~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v 256 (617)
T 3rg2_A 179 -TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQF-TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256 (617)
T ss_dssp -CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred -CCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCC-CCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence 13467899999999999999999999999999999998888999 99999999999999988764 6899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhc--ccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGK--QTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+... +..+++.++++++|++.++|+++..+++....... ++++||.++++ +....|+++++.|
T Consensus 257 ~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~Y 334 (617)
T 3rg2_A 257 LAADPS-ATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVF 334 (617)
T ss_dssp ECSSCC-HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEE
T ss_pred EeCCCC-HHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEe
Confidence 998765 68999999999999999999999999987655433 67777755432 3344566666555
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=304.83 Aligned_cols=265 Identities=12% Similarity=0.158 Sum_probs=208.6
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+. ++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 6 ~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~-~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 6 EMLRRAATRAPDHCALAVPARGLRLTHAELRAR-VEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (504)
T ss_dssp HHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhCCCceEEEEcCCCceeEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 5788999999998888776 778999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEE--eChHHHHHH-HHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC-CchhH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVV--EDDKQLEKI-LKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP-DESLD 156 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~--~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 156 (305)
++.++.+++.+++++++++++++ +... .+.+ .+ .+..+ ++. ++++........ .....
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~~~----~~~~~-~~~------------~~~~~~~~~~~~~~~~~~ 146 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQS----GSGAR-IIF------------LGDLVRDGEPYSYGPPIE 146 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CH-HHHHHHH----CCCCE-EEE------------GGGTEETTEECCCSCCCC
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhh-hhhhhhc----cccce-eEE------------ecchhhcCcccccCCccC
Confidence 99999999999999999999999 6552 2333 22 12222 221 222211110000 00000
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC-CCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
.....++++++|+|||||||.||||++||+++...+......+++. .++|++++.+|++|.+|+...++.++..|++
T Consensus 147 --~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~ 224 (504)
T 1t5h_X 147 --DPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224 (504)
T ss_dssp --CCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCE
T ss_pred --CCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCce
Confidence 0134678999999999999999999999999999888877766652 4679999999999999986668999999999
Q ss_pred EEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 236 LWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 236 ~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
+++.+.++ |..+++.++++++|+++++|+++..|++.... ...++++||.+++
T Consensus 225 ~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~ 279 (504)
T 1t5h_X 225 YVVVEEFR-PVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (504)
T ss_dssp EEECSSCC-HHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEE
T ss_pred EEeCCCCC-HHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEE
Confidence 99998765 79999999999999999999999999887522 3446778775544
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=309.30 Aligned_cols=283 Identities=19% Similarity=0.254 Sum_probs=221.8
Q ss_pred hHHHHHHHhcccceeee---ccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEe
Q psy2835 3 AFLKLGLERYHSVCIIG---FNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG 79 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~---~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~ 79 (305)
+++++.++++|+..++. .+++++||+||.++ ++++|++|.++|+++||+|+++++|+++++++++||+++|++++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 82 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVAR-AGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLP 82 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEe
Confidence 67899999999966554 46789999999996 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 80 MYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 80 i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
+++.++.+++.++++++++++++++.+. .+.+.++...... .+..++... ...+.+...........
T Consensus 83 l~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~------ 149 (503)
T 4fuq_A 83 LNTAYTLHELDYFITDAEPKIVVCDPSK-RDGIAAIAAKVGA--TVETLGPDG----RGSLTDAAAGASEAFAT------ 149 (503)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGG-TTTTHHHHHHHTC--EEEECCTTS----CSHHHHHHHTSCSCCCC------
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEECchh-hHHHHHHHhhcCc--eEEEecCCc----ccccchhhhcCCCCcCc------
Confidence 9999999999999999999999998763 2222222222211 233332211 11222222221111111
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
....++++++|+|||||||.||||++||+++..+.......+++ +++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 228 (503)
T 4fuq_A 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRF-TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL 228 (503)
T ss_dssp CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC
T ss_pred CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCC-CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc
Confidence 13467999999999999999999999999999999998888999 99999999999999998766678899999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.++ +..+++.++ ++|+++++|+++..+++.......+++++|.++++ |...+|.++++.|
T Consensus 229 ~~~~-~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~Y 300 (503)
T 4fuq_A 229 PKFD-PDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERY 300 (503)
T ss_dssp SSCC-HHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECC
T ss_pred CCCC-HHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceE
Confidence 8766 789999998 89999999999999988766555667777644432 4445677666655
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=305.72 Aligned_cols=262 Identities=16% Similarity=0.180 Sum_probs=212.9
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 5 ~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~-~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 5 EQIEKWAAETPDQTAFVWRDAKITYKQLKED-SDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp HHHHHHHHHSTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHCCCceEEEeCCceEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCC
Confidence 6789999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.... .......+ . ....+.++..........+ ....
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~~~~~----------~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~----~~~~ 141 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSATAVT----------VTDLPVRI-V-------SEDNLKDIFFTHKGNTPNP----EHAV 141 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEESSCCC----------SSCCSSEE-E-------ETHHHHHHHHHTTTCCCCG----GGSC
T ss_pred CCcHHHHHHHHHhcCCCEEEecCccc----------ccccccce-e-------chhhhhhhcccccccCCCc----cccC
Confidence 99999999999999999999985421 01111111 0 0111333332222111111 1245
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|..++. .++.++..|+++++.+..
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~ 219 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNL-QTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTLWAIDKD 219 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTC-CSSCEEEECSCTTSGGGHH-HHHHHHHTTCEEEECCHH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCC-CCCCEEEEeCCccHhHHHH-HHHHHHhCCCEEEECCHH
Confidence 77999999999999999999999999999999988888999 9999999999999999875 489999999999999863
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
..+..+++.++++++|++.++|+++..+++.......++++||.+++
T Consensus 220 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~ 268 (512)
T 3fce_A 220 MIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLF 268 (512)
T ss_dssp HHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEE
T ss_pred HhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEE
Confidence 23789999999999999999999999998776656667778775543
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=301.41 Aligned_cols=259 Identities=18% Similarity=0.188 Sum_probs=216.5
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+. |.++|++|+++++|+++++++++||+++|++++|++
T Consensus 5 ~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~-~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~ 83 (511)
T 3e7w_A 5 HAIQTHAETYPQTDAFRSQGQSLTYQELWEQ-SDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVD 83 (511)
T ss_dssp HHHHHHHHHSTTSEEEEETTEEEEHHHHHHH-HHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHCCCCeEEEcCCceeeHHHHHHH-HHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecC
Confidence 6789999999999999899999999999996 99999999885 888999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+.++.+++.++++++++++++++..... ..... ......++++........... ..
T Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~-------~~~~~------------~~~~~~~~~~~~~~~~~~~~~-----~~ 139 (511)
T 3e7w_A 84 LSIPSERIAKIIESSGAELLIHAAGLSI-------DAVGQ------------QIQTVSAEELLENEGGSVSQD-----QW 139 (511)
T ss_dssp TTSCHHHHHHHHHHHTCCEEEESSSCCT-------TCCCC------------SSCEEEHHHHHTSCSCCCCGG-----GS
T ss_pred CCChHHHHHHHHHhCCCCEEEecccccc-------hhccc------------ccceecHhhhhccccCCcccc-----cc
Confidence 9999999999999999999999754210 00000 012234555554332221111 23
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++++++|+|||||||.||||++||+++...+......+++ .++|++++..|++|..++. .++.++..|+++++.+.
T Consensus 140 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPV-SGGKIFLNQAPFSFDLSVM-DLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTT-TTTCEEEECSCTTSTHHHH-HHHHHHHTTCEEEECCH
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCC-CccceEEEeCCccHHHHHH-HHHHHHhcCCEEEEcCh
Confidence 567899999999999999999999999999999988888888 9999999999999998865 48999999999999876
Q ss_pred c--cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHH
Q psy2835 242 N--ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI 288 (305)
Q Consensus 242 ~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~ 288 (305)
. ..+..+++.++++++|++.++|+++..+++.+.....+++++|.++
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~ 266 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFM 266 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEE
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEE
Confidence 3 2378999999999999999999999999887655566677776544
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=297.08 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=207.5
Q ss_pred hHHHHHHHhcccceeeeccC---------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGFNA---------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~---------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
++|++.++++|+..++.+.+ +++||+||.++ ++++|++|.+.|+ +||+|+++++|+++++++++||+++
T Consensus 28 ~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~-~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~ 105 (480)
T 3t5a_A 28 AALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRR-TLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQA 105 (480)
T ss_dssp HHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHH-HHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHH-HHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 67889999999988887654 78999999996 9999999999996 9999999999999999999999999
Q ss_pred CCeEEecCC---CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCc--cEEEEccCCCCCCCcccHHHHHHhcc
Q psy2835 74 GGFAAGMYT---TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL--KAIVQYEGKPDKPGVISWDELMELGR 148 (305)
Q Consensus 74 G~~~v~i~~---~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~ 148 (305)
|++++|+++ ..+.+++.+++++++++++|++.+. .+.+.+.....+.. ..++.++.... ...
T Consensus 106 G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 172 (480)
T 3t5a_A 106 GRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA-VDDVVQHVARRPGESPPSIIEVDLLDL------------DAP 172 (480)
T ss_dssp TCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTT-HHHHHHTCC------CCEEEEGGGSCT------------TCC
T ss_pred CcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhH-HHHHHHHHhccccccccceeEeccccc------------ccc
Confidence 999999999 7889999999999999999999874 45555544333221 23332322110 000
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCC------CceEEEeCchhHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA------ALSVISFLPLSHIAAQ 222 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~------~~~~l~~~pl~~~~g~ 222 (305)
. ........++++++|+|||||||.||||++||+++..++......+.+ .. +|++++.+|++|.+|+
T Consensus 173 ---~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~h~~g~ 245 (480)
T 3t5a_A 173 ---N---GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFA-DTDGIPPPNSALVSWLPFYHDMGL 245 (480)
T ss_dssp ---------CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCT-TTTTCCCTTEEEEECCCTTSTTHH
T ss_pred ---c---CCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcc-ccccCCCCCCeEEEeCCCcCccHH
Confidence 0 001123467899999999999999999999999999999888888877 66 9999999999999998
Q ss_pred HHHHHHHHHhCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHHH----HHhhcccChHHHHHHH
Q psy2835 223 TVDIYSVMTVAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKL----MAVGKQTTGVKRWIAN 290 (305)
Q Consensus 223 ~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----~~~~~~~~sl~~~~~~ 290 (305)
...++.++..|+++++.+.. .++..+++.++++++| +..+|+++..++... .....++++||.++++
T Consensus 246 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~g 319 (480)
T 3t5a_A 246 VIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSG 319 (480)
T ss_dssp HHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEEC
T ss_pred HHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeec
Confidence 88889999999999999764 2478999999999999 889999988887752 3345678888765543
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=291.12 Aligned_cols=288 Identities=15% Similarity=0.104 Sum_probs=214.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+. +||+|+++++|+++++++++||+++|++++|+++
T Consensus 5 ~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~-~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~ 80 (501)
T 3ipl_A 5 FWLYKQAQQNGHHIAITDGQESYTYQNLYCE-ASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINT 80 (501)
T ss_dssp CHHHHHHHHHTTSEEEECSSCEEEHHHHHHH-HHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHhcCCceEEEeCCcEEEHHHHHHH-HHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCc
Confidence 5789999999999999899999999999996 99999999987 8999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---CCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
.++.+++.++++++++++++++.+.. ....... ................ ......+........ ..........
T Consensus 81 ~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 157 (501)
T 3ipl_A 81 RLTPNEMTNQMRSIDVQLIFCTLPLE-LRGFQIV-SLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVV-PKESPSNILN 157 (501)
T ss_dssp TSCHHHHHHHHHHTTCCEEEESSCCC-CTTSEEE-ETTC---------------------------------CCHHHHTC
T ss_pred cCCHHHHHHHHHhcCCCEEEEccccc-ccccccc-ccccceeeeeecccccccccccccccccchhhcc-ccCCcccccc
Confidence 99999999999999999999987631 1110000 0011110000000000 000000000000000 0011111112
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
....++++++|+|||||||.||||++||+++..........+++ +++|++++.+|++|.+|+.. ++.++..|+++++.
T Consensus 158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGF-DRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIV 235 (501)
T ss_dssp CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCC-CTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEC
T ss_pred cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCC-CccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeC
Confidence 23567999999999999999999999999999999998888999 99999999999999999866 89999999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHH----------HHHHHHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKR----------WIANYAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~----------~~~~~a~~~g~~~~~~~ 303 (305)
+.++ +..+++.++++++|++.++|+++..|++....... +||. -+.....+.|+++++.|
T Consensus 236 ~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~Y 305 (501)
T 3ipl_A 236 DKFN-AEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---NLQKILLGGAKLSATMIETALQYNLPIYNSF 305 (501)
T ss_dssp SSCC-HHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---TCCEEEECSSCCCHHHHHHHHHTTCCEEEEE
T ss_pred CCCC-HHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---cccEEEEeCCCCCHHHHHHHHHhCCCEeccc
Confidence 8766 79999999999999999999999999876432221 3332 23334445677776655
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=321.03 Aligned_cols=279 Identities=20% Similarity=0.257 Sum_probs=224.1
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+. ++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 65 ~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 65 DYIFQNISEFATKPCLINGPTGHVYTYSDVHVI-SRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAA 143 (979)
T ss_dssp HHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHH-HHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEee
Confidence 5778888999998877664 678999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---CCCcccHHHHHHhccCCCCchhHH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
+|.++.+++.+++++++++++|++... .+.+..+.... .. .++.+++... ..+...+.++....... ....
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 217 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARY-VDKIKPLQNDD-GV-VIVCIDDNESVPIPEGCLRFTELTQSTTEA---SEVI 217 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTT-TTTSHHHHHTS-CC-EEEECCCCTTSCCCTTEEEGGGTSSCCSGG---GGGS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHH-HHHHHHHhhcC-Cc-eEEEeCCcccccCCcccccHHHHhhccccc---cccC
Confidence 999999999999999999999999763 33333333222 22 3344443211 12334454443322110 0001
Q ss_pred hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhC
Q psy2835 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVA 233 (305)
Q Consensus 158 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G 233 (305)
......++++++|+|||||||.||||++||+++...+..... .+++ .++|++++.+|++|.+|+...++.++..|
T Consensus 218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~l~~G 296 (979)
T 3tsy_A 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALNSIMLCGLRVG 296 (979)
T ss_dssp CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCC-CSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccC-CCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence 112357799999999999999999999999999988776543 3456 88999999999999999977789999999
Q ss_pred cEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 234 ATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 234 ~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+++++.+.++ +..+++.++++++|++.++|+++..|++.......++++||.++++
T Consensus 297 ~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~g 352 (979)
T 3tsy_A 297 AAILIMPKFE-INLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSG 352 (979)
T ss_dssp CEEEECSSCC-HHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEES
T ss_pred cEEEEeCCCC-HHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEc
Confidence 9999998776 6899999999999999999999999998877777788888865543
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=295.34 Aligned_cols=258 Identities=14% Similarity=0.152 Sum_probs=208.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 8 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 8 DSIEQFAQTQADFPVYDCLGERRTYGQLKRD-SDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp HHHHHHHHHSTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHCCCCcceecCCCeecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCc
Confidence 6788999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhcc-CCCCchhHHhhhc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR-AAPDESLDRVLET 161 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 161 (305)
.++.+++.++++++++++++++.+.. ....... ...+.++..... ..+... ...
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~----~~~ 141 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIEEFP--------LTIEGIS-------------LVSLSEIESAKLAEMPYER----THS 141 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESSCCC--------SCCTTSE-------------EEEHHHHHHHHHHTCCCCC----SSC
T ss_pred cccHHHHHHHHHhCCCCEEEecCccc--------cccccCc-------------ccchhhhhhcccccCCccc----CCC
Confidence 99999999999999999999987621 1111111 112333322111 011100 013
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh--hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY--FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
..++++++|+|||||||.||||++||+++.......... +++ ..++++++..|++|..+.. .++.++..|+++++.
T Consensus 142 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~~~ 219 (521)
T 3l8c_A 142 VKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDV-PKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLFAL 219 (521)
T ss_dssp CCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCC-CSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEEEC
T ss_pred CCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCC-CCCCeEEecCCccHHHHHH-HHHHHHhcCCEEEEc
Confidence 467999999999999999999999999999887776655 566 8899999999999988764 488999999999998
Q ss_pred CCcc--chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHH
Q psy2835 240 DKNA--LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI 288 (305)
Q Consensus 240 ~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~ 288 (305)
+... ++..+++.++++++|++.++|+++..+.........++++||.++
T Consensus 220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~ 270 (521)
T 3l8c_A 220 PKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFY 270 (521)
T ss_dssp CGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEE
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEE
Confidence 7652 368999999999999999999999998876655556677776543
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=294.77 Aligned_cols=253 Identities=15% Similarity=0.124 Sum_probs=204.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 79 ~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 79 ELFEAQAARAPDAVALLHEADELTYGALNER-ANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHHCCCCeEEECCCCcEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCC
Confidence 6889999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.+. .........+...+.. ......... ....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~------------~~~~~~~~~------~~~~ 211 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL--------SGRLTGTTTLYVEDEA------------ASDAPAGNL------ATGV 211 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT--------TTSSCSSEEEECCC-------------------CCCC------CCCC
T ss_pred CChHHHHHHHHHhcCCCEEEecchh--------hhcccCCcceeeeccc------------ccccccccc------CCCC
Confidence 9999999999999999999998762 1222222222211110 000000000 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK- 241 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~- 241 (305)
.++++++|+|||||||.||||++||+++.+.... ...+++ +++|++++.+|++|..+. ..++.++..|+++++.+.
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~ 288 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGF-GPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQ 288 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCC-STTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCC-CCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCc
Confidence 6799999999999999999999999999876544 344567 889999999999985544 558899999999999874
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI 288 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~ 288 (305)
..++..+++.++++++|++.++|+++..|++.. ..++++||.++
T Consensus 289 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~~lr~~~ 332 (570)
T 4gr5_A 289 NPDPLEIGELVARHGVTMLQLSASLFNFLVDEV---PEAFEGVRYAI 332 (570)
T ss_dssp SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---GGGGTTCSEEE
T ss_pred cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc---hhhCCCceEEE
Confidence 234789999999999999999999999998753 33566766443
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=296.62 Aligned_cols=267 Identities=17% Similarity=0.146 Sum_probs=212.2
Q ss_pred hHHHHHHHhcccceeeecc----CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIGFN----APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~----~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
++|++.++++|+..++.+. ++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 15 ~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 93 (590)
T 3kxw_A 15 DVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQH-AKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAV 93 (590)
T ss_dssp HHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEE
Confidence 6788999999998777552 478999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCCCC---CHHHHHHHHhhCCceEEEEeChHHHHHHHHHh-ccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCch
Q psy2835 79 GMYTTN---SPEACLHCLVTSDANICVVEDDKQLEKILKVK-AQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDES 154 (305)
Q Consensus 79 ~i~~~~---~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 154 (305)
|++|.. +.+++.++++.+++++++++.+. ...+.... ...+....+.... .+.+........
T Consensus 94 pl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~--- 159 (590)
T 3kxw_A 94 PIYPPAQEKLLDKAQRIVTNSKPVIVLMIADH-IKKFTADELNTNPKFLKIPAIA----------LESIELNRSSSW--- 159 (590)
T ss_dssp EECCCCSHHHHHHHHHHHHHHCCSEEEECHHH-HHHHCC-----CCEETTEEEEE----------GGGCCGGGGGGC---
T ss_pred EecCCCchHHHHHHHHHHHhCCCCEEEeCHHH-HHHHHHhhhhhcccccccceee----------chhccccccccC---
Confidence 999988 45789999999999999998763 23332221 2222211111111 111100000000
Q ss_pred hHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCc
Q psy2835 155 LDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAA 234 (305)
Q Consensus 155 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 234 (305)
......++++++|+|||||||.||||++||+++..++......+++ +++|++++.+|++|.+|+...++.++..|+
T Consensus 160 ---~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~ 235 (590)
T 3kxw_A 160 ---QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHM-NDETIIFSWLPPHHDMGLIGCILTPIYGGI 235 (590)
T ss_dssp ---CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHTTTHHHHHHTC
T ss_pred ---CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCC-CCcCeEEEecCCCcchhhHHHHHHHHhcCc
Confidence 0123467999999999999999999999999999999998888999 999999999999999998766899999999
Q ss_pred EEEEeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHHHH---HHHhhcccChHHHHH
Q psy2835 235 TLWFADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIHEK---LMAVGKQTTGVKRWI 288 (305)
Q Consensus 235 ~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~---~~~~~~~~~sl~~~~ 288 (305)
++++.+... +|..+++.++++++|++.++|.++..+++. ......++++||.++
T Consensus 236 ~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~ 295 (590)
T 3kxw_A 236 QAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAF 295 (590)
T ss_dssp EEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEE
T ss_pred eEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHh
Confidence 999998653 378999999999999999999999999886 333455677777544
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=293.06 Aligned_cols=252 Identities=14% Similarity=0.076 Sum_probs=203.8
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|++|
T Consensus 31 ~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 31 ARFSEMAALHPHREAIRDRFGSVDYRQLLDS-AEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHhCCCCeEEEcCCCcCcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCc
Confidence 5788999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.... .......... ..... ...... .....
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~~~~~--------~~~~~~~~~~-~~~~~---------------~~~~~~----~~~~~ 161 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDCSTTP--------TPANGLPCVP-VRHLP---------------AAPASV----ARPCF 161 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECCSSC--------CCCTTSCEEE-GGGCC---------------CCCCCS----SCCCC
T ss_pred cChHHHHHHHHHhCCCcEEEecCccc--------ccccCCceee-eccCC---------------cCCccc----cCCCC
Confidence 99999999999999999999765421 0111111111 11000 000000 00123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK- 241 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~- 241 (305)
.++++++|+|||||||.||||+++|+++.+.... ...+++ .++|++++..|++|..+.. .++.++..|+++++.+.
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAF-APQMRFLVNSPLSFDAATL-EIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTT-CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCSS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCC-CCCCEEEEECccCHHHHHH-HHHHHHhcCCEEEeCccc
Confidence 5799999999999999999999999999876655 455677 8999999999999988864 58999999999999742
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
..++..+++.++++++|++.++|+++..|++. ...++++||.+++
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~---~~~~l~~lr~v~~ 283 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDL---DPDCLGGLRQLLT 283 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH---CGGGGTTCSEEEE
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc---ChhhCCCccEEEE
Confidence 33478999999999999999999999999763 3345677764433
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=283.85 Aligned_cols=256 Identities=16% Similarity=0.178 Sum_probs=203.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 43 ~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 43 QLFEEQVSKRPNNVAIVCENEQLTYHELNVK-ANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHHCCCCeEEEeCCceecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCC
Confidence 5788899999998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.+++++++++++|++.+. ...+.. ......+..+.... + ......... ...
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~-~~~~~~----~~~~~~~~~~~~~~-------~----~~~~~~~~~------~~~ 179 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHL-VHLIHN----IQFNGQVEIFEEDT-------I----KIREGTNLH------VPS 179 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGG-HHHHTT----SCCCSEEEECCCST-------T----TTSCCSCCC------CCC
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCch-hhhhhh----ccccCceeeecchh-------h----ccccCccCC------CCC
Confidence 9999999999999999999998763 222221 11112233222210 0 000000000 134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||||++||+++.+........+++ +++|++++..|++|..++. .++.++..|+++++.+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 180 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNV-TEKDRIGQFASISFDASVW-EMFMALLTGASLYIILKD 257 (563)
T ss_dssp CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCC-CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCHH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCC-CCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEEEcChH
Confidence 67899999999999999999999999999988888888888 9999999999999988874 588999999999998763
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
.++..+++.++++++|++.++|+++..+.+. ++++||.+++
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~ 300 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLIT 300 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEE
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEE
Confidence 2368999999999999999999999887542 3556654443
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=282.49 Aligned_cols=260 Identities=13% Similarity=0.115 Sum_probs=199.7
Q ss_pred hHHHHHHHhcccceeeeccC----------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHH
Q psy2835 3 AFLKLGLERYHSVCIIGFNA----------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIY 72 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~----------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~ 72 (305)
++|++.++++|++.++.+.+ +++||+||.++ ++++|+.|.+.|+ +||+|+++++|+++++++++||++
T Consensus 24 ~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~ 101 (562)
T 3ite_A 24 HYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNET-ANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMK 101 (562)
T ss_dssp HHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHH-HHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHH-HHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHH
Confidence 67899999999988876532 68999999996 9999999999999 799999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC
Q psy2835 73 AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152 (305)
Q Consensus 73 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (305)
+|++++|+++.++.+++.++++++++++++++++.. .. ...+....++... ...+.+..........
T Consensus 102 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~-~~-----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 168 (562)
T 3ite_A 102 SGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNF-DG-----VELPPETKVLDTK-------NQSFIENLSTQDTSDI 168 (562)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTT-TT-----CCCCTTCEEEETT-------CHHHHHHHHHSCCSCC
T ss_pred hCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccc-cc-----cccCccceeeccc-------chhhhhhccccccccc
Confidence 999999999999999999999999999999986521 11 0111122222111 1123333322221111
Q ss_pred chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh--------hccCCCCceEEEeCchhHHHHHHH
Q psy2835 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY--------FKLESAALSVISFLPLSHIAAQTV 224 (305)
Q Consensus 153 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~l~~~pl~~~~g~~~ 224 (305)
. ....++++++|+|||||||.||||++||+++.......... ..+ ...+++++..|++|..+. .
T Consensus 169 ~------~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ 240 (562)
T 3ite_A 169 L------NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL-GGVGKFLCLASRAFDVHI-G 240 (562)
T ss_dssp C------CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGC-TTTCEEECCSCTTSTHHH-H
T ss_pred c------cCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhccc-CcCceEEEecCchhhhhH-H
Confidence 1 13356889999999999999999999999999887765544 335 778999999999997775 4
Q ss_pred HHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 225 DIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
.++.++..|+++++.+....+..+.+.++++++|++.++|++++.+.. ...++++||.+++
T Consensus 241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----~~~~~~~lr~~~~ 301 (562)
T 3ite_A 241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDAPHLVYLGV 301 (562)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----CGGGSTTCCEEEE
T ss_pred HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----CccccCceEEEEE
Confidence 588999999999998876656788999999999999999998776532 3446777775543
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=286.13 Aligned_cols=232 Identities=18% Similarity=0.227 Sum_probs=189.4
Q ss_pred HHHHHHhccc-ceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC
Q psy2835 5 LKLGLERYHS-VCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83 (305)
Q Consensus 5 l~~~~~~~~~-~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~ 83 (305)
|.+.++++|+ +.++.+.++++||+||.++ ++++|..|. .|++|+++++|+++++++++||+++|++++|++|.
T Consensus 28 l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~-~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~ 101 (505)
T 3nyq_A 28 LSPAPTGAPADRPALRFGERSLTYAELAAA-AGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPK 101 (505)
T ss_dssp TSSCCCSGGGGSEEEEETTEEEEHHHHHHH-HHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTT
T ss_pred HHHHHHhCCCCCeEEEECCeeeeHHHHHHH-HHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCC
Confidence 4444556665 8888899999999999996 999997664 48899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccC
Q psy2835 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 163 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (305)
++.+++.++++++++++++++.+.. ..........+. ++... ...... ....
T Consensus 102 ~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~-~~~~~---------------~~~~~~------~~~~ 153 (505)
T 3nyq_A 102 SGDKELAHILSDSAPSLVLAPPDAE------LPPALGALERVD-VDVRA---------------RGAVPE------DGAD 153 (505)
T ss_dssp CCHHHHHHHHHHHCCSEEEECTTCC------CCGGGTTSEEEE-CCTTC---------------CCCCCC------CCCC
T ss_pred CCHHHHHHHHHHCCCCEEEECCccc------cchhhccccccc-ccccc---------------ccCCCC------CCCC
Confidence 9999999999999999999986521 001111222211 11100 000000 1346
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA 243 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~ 243 (305)
++++++|+|||||||.||||++||+++...+......+++ .++|++++.+|++|.+|+...++.++..|+++++.+.+.
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~ 232 (505)
T 3nyq_A 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQW-TGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFS 232 (505)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCC
T ss_pred CCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCC-CCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 7899999999999999999999999999999998888999 999999999999999999878899999999999998766
Q ss_pred chhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 244 LKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 244 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
+..+++.+ ++++|+++++|+++..+++.
T Consensus 233 -~~~~~~~i-~~~~t~~~~~P~~~~~l~~~ 260 (505)
T 3nyq_A 233 -TEGAAREL-NDGATMLFGVPTMYHRIAET 260 (505)
T ss_dssp -HHHHHHHH-TTTCCEEEECHHHHHHHHHH
T ss_pred -hHHHHHHH-hhCCeEEEehHHHHHHHHHh
Confidence 68888888 88999999999999999874
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=290.91 Aligned_cols=245 Identities=20% Similarity=0.247 Sum_probs=200.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++++||+||.++ ++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 468 ~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 468 YWFKEAVNANPDAPALTYSGQTLSYRELDEE-ANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp HHHHHHHHHCTTSEEEESSSCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHhCCCCeEEEECCeeEcHHHHHHH-HHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECC
Confidence 5788899999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.... .. ....+.....+.+++.. .. ......+. ...
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~~-~~----~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~-------~~~ 604 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEMK-EQ----AAELPYTGTTLFIDDQT---------RF-EEQASDPA-------TAI 604 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTTC-TT----STTCCCCSEEEESSCGG---------GG-GSCSSCCC-------CCC
T ss_pred CCHHHHHHHHHHHcCCCEEEECcchh-hh----hhccCCCCcEEEecccc---------cc-ccccCCCC-------CCC
Confidence 99999999999999999999987631 11 11122223333332210 00 00000010 134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+. ......+++ +++|++++..|++|..+ ++.++.++..|+++++.+..
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~-~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~ 681 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAF-SDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEH 681 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCC-CTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCC-CCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChh
Confidence 6799999999999999999999999999865 334455677 88999999999998665 46699999999999999853
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
.++..+.+.+++++||++.++|++++.+.+.
T Consensus 682 ~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~ 714 (1304)
T 2vsq_A 682 TLLDTERLTDLILQENVNVMFATTALFNLLTDA 714 (1304)
T ss_dssp GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence 2378999999999999999999999999764
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-23 Score=179.87 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=113.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
..+++++|+|||||||.||||++||+++.+++......+++ +++|++++.+|++|.+|+.. ++.++..|+++++.+..
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSL-GPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPT 112 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCC
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCC-CCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCcc
Confidence 45899999999999999999999999999999999999999 99999999999999999865 88899999999998765
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH----------HHHHHhhhHHHhhh
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~----------~~a~~~g~~~~~~~ 303 (305)
. +.++.++++++|++.++|+++..|+++.. ...++++||.+++ .+..+.|+++++.|
T Consensus 113 ~---~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~Y 179 (358)
T 4gs5_A 113 A---NPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSY 179 (358)
T ss_dssp S---CTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEE
T ss_pred c---cHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheecccccCceEEecc
Confidence 4 34678999999999999999999988654 3446788775544 34555666666655
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.7e-20 Score=161.84 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=113.5
Q ss_pred CC-CceeEEEeccCCCCCCcceEechhHHHHHHHHHH---HhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 AT-NECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.+ +++++|+|||||||.||+|++||+++........ ..+++ .++|++++..|+.|..+....++.++..|+++++
T Consensus 83 ~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 83 DMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGI-RKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp CHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTC-CTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCC-CCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 44 8899999999999999999999999987665553 34477 8999999999998777777778899999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcc--cChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ--TTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
.+..+ +..+++.++++++|++.++|+++..|++.......+ +++||.++++ +...+|+++++.|
T Consensus 162 ~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~Y 238 (436)
T 3qov_A 162 AAAGN-SKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSF 238 (436)
T ss_dssp CCSCC-HHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEE
T ss_pred CCCCC-HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecC
Confidence 87765 699999999999999999999999999987776554 6677754433 3333477776655
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=155.31 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=109.7
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH---HhhccCCCCceEEEeCch-hHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++++++++|||||||.||+|++||+++........ ..+++ +++|++++.+|+ +|..++. ..+.++..|++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~ 164 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGA-RRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVI 164 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTC-CTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEE
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCC-CCCCEEEEcccccccccchH-HHHHHHHcCCEEE
Confidence 3568999999999999999999999999987664433 35677 899999999998 6766654 4788999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcc--cChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ--TTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+..+ ++.+++.+++++||++.++|+++..|++.......+ ++++|.++++ +.+.+|+++++.|
T Consensus 165 ~~~~~~-~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~Y 242 (437)
T 2y27_A 165 PFGGGQ-TEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIY 242 (437)
T ss_dssp CCCSCC-HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEE
T ss_pred eCCCCC-HHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecC
Confidence 887765 799999999999999999999999999877654433 3666644332 2233577776665
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=154.94 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=109.5
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH---HhhccCCCCceEEEeCch-hHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++++++++|||||||.||+|++||+++........ ..+++ .++|++++..|+ +|..+. ...+.++..|++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGG-RPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV 166 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTC-CTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCC-CCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence 3568999999999999999999999999987655433 35677 899999999999 465554 44788999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcc--cChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ--TTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+..+ ++.+++.|+++++|++.++|+++..|++.......+ +++||.++++ +.+.+|+++++.|
T Consensus 167 ~~~~~~-~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~Y 244 (443)
T 2y4o_A 167 PMSGGQ-TEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIY 244 (443)
T ss_dssp CCCSCC-HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred ECCCCC-HHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEecc
Confidence 888765 799999999999999999999999999877655433 3666644332 2333577776655
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-19 Score=154.45 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=96.3
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH---HhhccCCCCceEEEeCch-hHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++++++|+|||||||.||+|.++|+++........ ...++ .++|++++.+|+ +|..|+.. .+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPG-RPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTT-CCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCC-CCcceEEEecCCCchhhhHHH-HHHHHHcCC-EE
Confidence 3678899999999999999999999999999887543 44566 889999999999 99888866 566688999 55
Q ss_pred EeCCccchh-----------------------HHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 238 FADKNALKG-----------------------SLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 238 ~~~~~~~~~-----------------------~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
+...++ |. .+++.++++++|++.++|+++..|++.......++++||.+++
T Consensus 165 ~~~~~d-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~ 238 (369)
T 3hgu_A 165 FSIDID-PRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITL 238 (369)
T ss_dssp ECCCCC-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEE
T ss_pred ECccCC-hHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEE
Confidence 554433 44 7777999999999999999999998876554455666664443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.76 Score=39.99 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=66.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.+|.+.+.. .+..++..+...|+.++|++....+-+ ...+...++++..|+.+++++. .+.+.+...+++.++.++
T Consensus 109 ~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 109 GYTAADIDT-WANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EECHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHH-HHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 378999888 477777777788999999998887753 3344567888899999987765 478899999999999999
Q ss_pred EEeChH
Q psy2835 102 VVEDDK 107 (305)
Q Consensus 102 ~~~~~~ 107 (305)
++....
T Consensus 187 ~~~Ps~ 192 (437)
T 2y27_A 187 MVTPSY 192 (437)
T ss_dssp EECHHH
T ss_pred EECHHH
Confidence 988764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.6 Score=40.61 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC--ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.+|.+.+.. .+..++..+...|+.++|++....+- ....+..+++++..|+..++.+.. .++.+...+++.++.++
T Consensus 105 ~~th~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 105 VHSQHDLDS-WANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEHHHHHH-HHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EECHHHHHH-HHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 389999988 58888888888899999999888764 334455678889999998877654 77889999999999999
Q ss_pred EEeChHHHHHHHHH-hc-----cCCCccEEEEccC
Q psy2835 102 VVEDDKQLEKILKV-KA-----QCPKLKAIVQYEG 130 (305)
Q Consensus 102 ~~~~~~~~~~~~~~-~~-----~~~~~~~~i~~~~ 130 (305)
+..... +..+.+. .. ....++.+++-++
T Consensus 183 ~~~P~~-~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 183 HAIPSY-AIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp ECCHHH-HHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred EECHHH-HHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 988764 3333332 11 1345666664443
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.73 Score=40.18 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=66.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.+|.+.+.. .+..++..+...|+.++|++....+-+ ...+...++++..|+.+++++.. +.+.+...+++.++.++
T Consensus 111 ~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 111 GYTARDIDT-WANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EECHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHH-HHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 388999988 477777777788999999998887753 33455678888999998887754 78899999999999999
Q ss_pred EEeChH
Q psy2835 102 VVEDDK 107 (305)
Q Consensus 102 ~~~~~~ 107 (305)
++....
T Consensus 189 ~~~Ps~ 194 (443)
T 2y4o_A 189 LVTPSY 194 (443)
T ss_dssp EECHHH
T ss_pred EECHHH
Confidence 988764
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=4.4 Score=36.21 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=77.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. +.+| -.+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 34 ~~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vp 103 (536)
T 3ni2_A 34 NHSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGI-QQGDVIMLFLPSSPE--FVLAFLGASHRGAIITA 103 (536)
T ss_dssp GSTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEE
T ss_pred cCCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEec
Confidence 3577888664 2222 468999999877766655 467 889999999888653 34458999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
.+....++.+...++..++..+...+.....+.+
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 104 ANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 8877767899999999999999998876666544
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=90.81 E-value=1.8 Score=38.91 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=79.6
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.+..+.++ ..+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+..
T Consensus 33 ~p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl 105 (550)
T 3rix_A 33 YALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGL-NTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPA 105 (550)
T ss_dssp HHTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEEECSSCTT--THHHHHHHHHHTCEEEEC
T ss_pred CCCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCccc--HHHHHHHHHHcCCEEeec
Confidence 4566676655444433 4799999998877766554 67 899999999887653 344589999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
+....++.+...++..++.+++..+.....+.+.
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 106 NDIYNERELLNSMNISQPTVVFVSKKGLQKILNV 139 (550)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHH
Confidence 8777678899999999999999998877766543
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=90.42 E-value=4.8 Score=36.06 Aligned_cols=107 Identities=13% Similarity=0.028 Sum_probs=79.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++....+..+ -..-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 31 ~~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 106 (549)
T 3g7s_A 31 KFGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGV-RKGEHVGVCIPNSID--YVMTIYALWRVAATPVP 106 (549)
T ss_dssp HHTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred hCCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEc
Confidence 35688887754322111 1235789999998877766554 67 899999999987653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
.+....++.+...++..++..+...+.....+..
T Consensus 107 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 107 INPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 9877767889999999999999998877666543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=89.89 E-value=3.4 Score=36.59 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=77.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. .+-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 18 ~~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vp 85 (509)
T 3ivr_A 18 LFPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGV-HTGDRVAILSQNCSE--MIELIGAVALIGAILLP 85 (509)
T ss_dssp HSTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEE
T ss_pred HCCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEe
Confidence 4678888764 235799999999887766654 67 889999999987653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
.+....++.+...++..++..+...+.....+..
T Consensus 86 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 86 VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp CCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 9877767888999999999999998876665433
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=6.1 Score=35.33 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=76.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++....+ ..-.+|++.+...+..+... .++ .++|++...++-+.- ++..+++++..|+..+.
T Consensus 30 ~~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vp 101 (541)
T 1v25_A 30 LFGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGV-GVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHT 101 (541)
T ss_dssp HSTTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred hCCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEe
Confidence 35677777643211 34579999999877766554 467 889999999887653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...++..++..+...+.....+
T Consensus 102 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cCcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 88776678899999999999999988766554
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=7.3 Score=35.13 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++.... .| ....+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vp 128 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGL-QRGDRVAVVLPRVPE--WWLVILGCIRAGLIFMP 128 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCC-CTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEe
Confidence 567888765421 12 235799999998777665543 67 889999999887653 34458999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...++..++..+...+.....+
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 88776678899999999999999887766554
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=88.01 E-value=6.9 Score=34.55 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=73.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.. . .+..+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 14 ~~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 83 (504)
T 1t5h_X 14 RAPDHCALAVP---A----RGLRLTHAELRARVEAVAARLHADGL-RPQQRVAVVAPNSAD--VVIAILALHRLGAVPAL 83 (504)
T ss_dssp HCTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEE
T ss_pred hCCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHhCcEEEe
Confidence 36677787642 1 235799999998877666554 67 889999999887753 34458999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEe--chHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLA--VPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~--~P~~~~~l 270 (305)
.+....++.+...++..++..+.. .+.....+
T Consensus 84 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp ECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred cCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 887766788889999999999888 65544433
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=87.65 E-value=7.8 Score=34.39 Aligned_cols=100 Identities=10% Similarity=-0.009 Sum_probs=77.1
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.. | +...+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 28 ~~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 97 (517)
T 3r44_A 28 VSPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGI-AKGDRVALLMPNSVE--FCCLFYGAAKLGAVAVP 97 (517)
T ss_dssp HSTTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCC-CCcCEEEEEcCCCHH--HHHHHHHHHHhCcEEEe
Confidence 46778887642 1 235799999998877766654 67 889999999987653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+....++.+...++..++.++...+.....+.
T Consensus 98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (517)
T 3r44_A 98 INTRLAAPEVSFILSDSGSKVVIYGAPSAPVID 130 (517)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cCcccCHHHHHHHHHhcCceEEEECCchHHHHH
Confidence 887776788999999999999998876655543
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=87.59 E-value=10 Score=33.12 Aligned_cols=110 Identities=8% Similarity=0.023 Sum_probs=78.4
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC-CCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
...++.++++.........-....+|++.+...+..+...+.-. .++|++...++-+.- ++..+++++..|+..+.+
T Consensus 35 ~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 35 RLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLE--YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp HHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEE
T ss_pred HhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEee
Confidence 34678888776542211111347899999999888877766321 368898888887653 344589999999999988
Q ss_pred CC---ccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 240 DK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 240 ~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
+. ....+.+...++..++..+...+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 65 2224788889999999999998877665543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=87.18 E-value=8.3 Score=34.68 Aligned_cols=95 Identities=12% Similarity=0.066 Sum_probs=73.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. ..-.+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 51 ~~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vp 118 (563)
T 1amu_A 51 KRPNNVAIVC---------ENEQLTYHELNVKANQLARIFIEKGI-GKDTLVGIMMEKSID--LFIGILAVLKAGGAYVP 118 (563)
T ss_dssp HCTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred HCCCCeEEEe---------CCceecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEE
Confidence 3677888763 12479999998877766554 467 889999998887653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWE 268 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~ 268 (305)
.+....++.+...++..++..++..+....
T Consensus 119 l~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 119 IDIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 887776788889999999999998876543
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=87.03 E-value=15 Score=32.24 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=68.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh-HHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE-WFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
.+|++.+... +.... ...++.++|++...+|-... .+..+++++..|+..+..+ ..+++.+...+++.++..+.
T Consensus 182 ~~th~~~~~~-~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 256 (501)
T 3ipl_A 182 PQTFRNHYAS-AIGCK---ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHIS 256 (501)
T ss_dssp EEEHHHHHHH-HHHHH---HHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEE
T ss_pred EEeHHHHHHH-HHHHH---HhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEE
Confidence 4888888873 55443 45688999998888776433 2334677888899888776 47889999999999999999
Q ss_pred EeChHHHHHHHHHh-ccCCCccEEEEc
Q psy2835 103 VEDDKQLEKILKVK-AQCPKLKAIVQY 128 (305)
Q Consensus 103 ~~~~~~~~~~~~~~-~~~~~~~~~i~~ 128 (305)
..... +..+.+.. .....++.++.-
T Consensus 257 ~~P~~-~~~l~~~~~~~~~~lr~i~~g 282 (501)
T 3ipl_A 257 LVPQT-LNWLMQQGLHEPYNLQKILLG 282 (501)
T ss_dssp ECHHH-HHHHHHHTCCSCTTCCEEEEC
T ss_pred chHHH-HHHHHhcCCCCcCcccEEEEe
Confidence 88764 34444332 222255555543
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=8.3 Score=34.07 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=74.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.+++++...+ +-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+..
T Consensus 13 ~p~~~a~~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 13 LDDPHKLAIETAA------GDKISYAELVARAGRVANVLVARGL-QVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CSCTTSEEEEETT------CCEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCCceEEEecCC------CcEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEec
Confidence 4555666554332 23699999998877766554 67 889999999988753 344589999999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....++.+...++..++..+...+.....+
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 114 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGI 114 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTT
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHH
Confidence 8777678899999999999999887654433
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=86.38 E-value=7.7 Score=35.07 Aligned_cols=98 Identities=5% Similarity=0.029 Sum_probs=75.8
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++..... | ....+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+
T Consensus 67 ~~~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv-~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~v 139 (580)
T 3etc_A 67 RDSPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGI-GKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAV 139 (580)
T ss_dssp HHCTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECTTCTH--HHHHHHHHHHHTCEEE
T ss_pred hhCCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEE
Confidence 347888998765321 2 34679999999877766655 467 899999999987653 3445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
..+....++.+...++..++..+...+.
T Consensus 140 pl~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 140 PATHMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp ECCTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred eCCccCCHHHHHHHHHhcCCCEEEEecc
Confidence 8887776789999999999999987654
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=85.12 E-value=6.3 Score=35.06 Aligned_cols=97 Identities=5% Similarity=-0.003 Sum_probs=74.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. +-.+|++.+...+..+... .++ .++|++...+|-+.-+ +..+++++..|+..+..
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGV-HPEERILLVMLDTVAL--PVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEec
Confidence 5677776521 2468999999887776654 467 8899999998876533 34478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+....++.+...++..++..+...+.....+.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 87766788999999999999999887665543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=85.09 E-value=10 Score=36.75 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=76.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. +.+| -.+|++.+...+..+... .++ .++|++...+|-+. .++..+++++..|+..+.
T Consensus 73 ~~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~ns~--e~~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 73 EFATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGV-NQNDVVMLLLPNCP--EFVLSFLAASFRGATATA 142 (979)
T ss_dssp GTTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECSSCH--HHHHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCC-CCcCEEEEEeCCCH--HHHHHHHHHHHcCCEEEe
Confidence 4678888764 2222 478999999877776655 467 89999999998775 334558999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...++..++.++...+.....+
T Consensus 143 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 143 ANPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp ECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 88777678899999999999999887655444
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=85.03 E-value=12 Score=34.46 Aligned_cols=98 Identities=9% Similarity=0.118 Sum_probs=74.1
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh----hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++.++++... ...| ....+|++.|...+..+... .++ .++|++...+|.+-- .+..+++++..|+..+
T Consensus 94 ~~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv-~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~v 167 (663)
T 1ry2_A 94 KTPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGV-RKGDTVAVYMPMVPE--AIITLLAISRIGAIHS 167 (663)
T ss_dssp TCTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCC-CTTCEEEECCCSSHH--HHHHHHHHHHTTCEEE
T ss_pred cCCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEE
Confidence 357788876542 2122 34579999999877766554 456 889999999998753 3445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.+.....++.+...++..++.+++..+.
T Consensus 168 pl~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 168 VVFAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred eeCCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 8887766789999999999999988654
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=84.47 E-value=12 Score=33.64 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=72.7
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. ..-.+|++.+...+..+... .++ .++|++...+|-+.-+ +..+++++..|+..+.
T Consensus 87 ~~pd~~A~~~---------~~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vp 154 (570)
T 4gr5_A 87 RAPDAVALLH---------EADELTYGALNERANRLAHRLVGLGV-APGTLVGVHLERGFDM--VVALLAVLKAGGGYTM 154 (570)
T ss_dssp HCTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred HCCCCeEEEC---------CCCcEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEE
Confidence 4678888763 12369999999887776654 467 8899999999877533 4458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
.+....++.+...++..++..+......
T Consensus 155 l~~~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 155 LDPQFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred cCCCChHHHHHHHHHhcCCCEEEecchh
Confidence 9877767889999999999998876543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=83.86 E-value=15 Score=33.77 Aligned_cols=96 Identities=5% Similarity=0.083 Sum_probs=72.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. +..+| ..-.+|++.|...+..+... .++ .++|++...+|-+-- .+..+++++..|+..+.+
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv-~~Gd~V~i~~~~~~e--~vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGI-KKGDVVAIYMPMVPE--AAVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHH--HHHHHHHHHHcCcEEEec
Confidence 4677887643 22222 34579999999877766554 467 899999999998753 344589999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.....++.+...++..++.+++...
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 8776678999999999999988754
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=83.78 E-value=22 Score=31.88 Aligned_cols=103 Identities=9% Similarity=0.031 Sum_probs=76.8
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++....+ ..-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+
T Consensus 22 ~~~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v 93 (590)
T 3kxw_A 22 LHSPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGA-KPGDRVLLLFAPGLP--LIQAFLGCLYAGCIAV 93 (590)
T ss_dssp HHCTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred HhCCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchh--HHHHHHHHHHhCcEEE
Confidence 346788887655411 345799999998877766554 67 889999999987753 3445899999999999
Q ss_pred EeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 238 FADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 238 ~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
...... ..+.+...++..++..+...+.....+.
T Consensus 94 pl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 94 PIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp EECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred EecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 887643 2367778889999999999888776653
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=12 Score=33.36 Aligned_cols=93 Identities=9% Similarity=0.068 Sum_probs=72.3
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++. ..-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+
T Consensus 41 ~~~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~v 108 (544)
T 3o83_A 41 QSHPHSLAIIC---------GERQLSYIELDRLSTNLATRLAEKGL-GKGDTALVQLPNVAE--FYIVFFALLKAGVVVL 108 (544)
T ss_dssp HHCTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEECCCSSHH--HHHHHHHHHHHTCEEE
T ss_pred HhCCCceEEEc---------CCCceeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCcEEe
Confidence 34778888763 135799999998877766554 67 899999999887653 3445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.......++.+...++..++..+...+.
T Consensus 109 pl~~~~~~~~l~~~l~~~~~~~li~~~~ 136 (544)
T 3o83_A 109 NALYSHRQYELNAFIKQIQPKLLIGSRQ 136 (544)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEEETT
T ss_pred cCCCCCCHHHHHHHHHhcCeeEEEEccc
Confidence 8876665788889999999999987653
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=6.5 Score=35.21 Aligned_cols=98 Identities=8% Similarity=0.025 Sum_probs=74.4
Q ss_pred CceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
+.++++.. .+ +..+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+..+.
T Consensus 40 ~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~la~~~~Gav~vpl~~ 109 (548)
T 2d1s_A 40 GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGL-VVDGRIALCSENCEE--FFIPVIAGLFIGVGVAPTNE 109 (548)
T ss_dssp TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEEECSSCTT--THHHHHHHHHHTCEEEEECT
T ss_pred CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchh--HHHHHHHHHhhCCEEeccCC
Confidence 66776532 12 2469999999877766655 467 889999998887643 33447899999999998887
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
...++++...++..++.+++..+.....+..
T Consensus 110 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 140 (548)
T 2d1s_A 110 IYTLRELVHSLGISKPTIVFSSKKGLDKVIT 140 (548)
T ss_dssp TSCHHHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 7667899999999999999998876665543
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=3.7 Score=34.59 Aligned_cols=81 Identities=10% Similarity=-0.042 Sum_probs=57.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHH--------------
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPE-------------- 87 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~-------------- 87 (305)
.+|.+.+.. .+...+..+...|+.++|++...++-+ ..-....++++..|+.+++. ..++.
T Consensus 110 ~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 110 VAYDAWIEA-LISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EECHHHHHH-HHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EECHHHHHH-HHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 378888888 477666667778999999998887752 22334455568889855543 33444
Q ss_pred ---------HHHHHHhhCCceEEEEeChH
Q psy2835 88 ---------ACLHCLVTSDANICVVEDDK 107 (305)
Q Consensus 88 ---------~~~~~l~~~~~~~v~~~~~~ 107 (305)
++...+++.++.++++....
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 67779999999999987653
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* | Back alignment and structure |
|---|
Probab=81.34 E-value=13 Score=31.06 Aligned_cols=67 Identities=9% Similarity=-0.154 Sum_probs=50.3
Q ss_pred HHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 40 KAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 40 ~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
....+.|. ++|+.|.+....+..-..+.++|...|..++.+-|...+.+....++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 44456664 88888756666677788888888888987776655555566677899999999999764
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=80.50 E-value=18 Score=32.27 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=69.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. + .-.+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+..
T Consensus 38 ~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGI-QQKDRVVVQLPNIKE--FFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHH--HHHHHHHHHHcCeEEecC
Confidence 567778753 1 2479999999877766654 467 899999999887653 344589999999998888
Q ss_pred CCccchhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.....++.+...++..++..+...+
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecc
Confidence 7666568888999999999988765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 305 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-25 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 9e-20 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 7e-18 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-17 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-10 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 6e-10 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-09 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 103 bits (258), Expect = 2e-25
Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 13/256 (5%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L A L LG+++ V I PE + L G + ++ SP
Sbjct: 106 YRELHR-DVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 164
Query: 87 EACLHCLVTSDANICVVEDD-------KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVIS 139
EA C++ S + + + D+ L+K + + P + ++ I
Sbjct: 165 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 224
Query: 140 WDELMELGRAAPDE--SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 197
W E +L E S + E + + ++YTSG+ G K V+ + AA
Sbjct: 225 WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATT 284
Query: 198 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK---GSLINTLLE 254
+Y + + + +Y + AT + + + +
Sbjct: 285 FKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK 344
Query: 255 VRPHVFLAVPRVWEKI 270
+ ++ P +
Sbjct: 345 HQVNILYTAPTAIRAL 360
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.2 bits (215), Expect = 9e-20
Identities = 32/258 (12%), Positives = 76/258 (29%), Gaps = 13/258 (5%)
Query: 27 YSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 85
Y +L +A+ +G+ + +V + PE + L G + ++ S
Sbjct: 93 YKELLE-EVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 151
Query: 86 PEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCPKLKAIVQYEGKPDKPGV 137
+ + D+ + + D+ + + P ++ ++ Y +
Sbjct: 152 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 211
Query: 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 197
++ + + + L+YTSG+ GA K V S A
Sbjct: 212 FHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLT 271
Query: 198 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGS---LINTLLE 254
++Y + + I T +Y + + + + + E
Sbjct: 272 MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDE 331
Query: 255 VRPHVFLAVPRVWEKIHE 272
+ F P +
Sbjct: 332 HKVTQFYVAPTALRLLKR 349
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 81.5 bits (200), Expect = 7e-18
Identities = 43/264 (16%), Positives = 90/264 (34%), Gaps = 3/264 (1%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y++ + LA+A + GL H + + N+ ++F LGA++ G A +
Sbjct: 50 YAEYFE-MSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 108
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
L+ + S + V K L+KIL V+ + P ++ I+ + K D G S +
Sbjct: 109 RELLNSMNISQPTVVFV-SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 167
Query: 147 GRAAPDESLDRVLETIATNE-CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205
D V E+ ++ ++ +SG+ G K V L H +
Sbjct: 168 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 227
Query: 206 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPR 265
+ + + + + +L + + L VP
Sbjct: 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 287
Query: 266 VWEKIHEKLMAVGKQTTGVKRWIA 289
++ + + + + +
Sbjct: 288 LFSFFAKSTLIDKYDLSNLHEIAS 311
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 79.9 bits (196), Expect = 2e-17
Identities = 42/263 (15%), Positives = 88/263 (33%), Gaps = 14/263 (5%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y+++ A L LG+ V +GFN + G SP
Sbjct: 43 YAEVYQ-RARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 101
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
+ + L ++ + + D L + ++ + ++ V + K + + + L E
Sbjct: 102 KEIAYILNHAEDKVL-LFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEE 160
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
C + YT+GT G K V+ SH + ++ +
Sbjct: 161 ADPVRVPERA----------ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALS 210
Query: 207 ALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPR 265
V + +P+ H+ A + + + A + + + E VP
Sbjct: 211 EKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGE-GVTFTAGVPT 269
Query: 266 VWEKIHEKLMAVGKQTTGVKRWI 288
VW + + L + G + ++R +
Sbjct: 270 VWLALADYLESTGHRLKTLRRLV 292
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 58.9 bits (141), Expect = 2e-10
Identities = 32/217 (14%), Positives = 72/217 (33%), Gaps = 9/217 (4%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
W Y +L A LA F KLG+++ V + N E+F G +
Sbjct: 50 HWSYRELDT-RADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPS 108
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
+ + ++A ++ D + Q P +I E
Sbjct: 109 HRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ--------SKLPTLKNIIVAGEA 160
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 203
E + L + +++ L + G+ G SK + +HD+ ++ ++ L
Sbjct: 161 EEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWL 220
Query: 204 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
+ + + + + + + + V+ + +
Sbjct: 221 DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 57.6 bits (138), Expect = 6e-10
Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ Y +L A LA+ F++ G+ + V I+ + + F L + AGG +
Sbjct: 48 QLTYHELNV-KANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIE 106
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
E + L S A + + + L +Q+ G+ + +
Sbjct: 107 YPKERIQYILDDSQARMLLTQKH------------LVHLIHNIQFNGQVEIFEEDTIKIR 154
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 201
P +S D ++YTSGT G K ML H I+
Sbjct: 155 EGTNLHVPSKSTD----------LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL 202
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 56.6 bits (135), Expect = 1e-09
Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 17/185 (9%)
Query: 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76
+ +++L A +A GL V ++ N+ + + L G
Sbjct: 22 AVPARGLRLTHAELRA-RVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80
Query: 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG 136
A + + + V+ +Q+ + Q I+
Sbjct: 81 PALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI---FQSGSGARIIFLGDLVRDGE 137
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 196
S+ +E + P + + YTSGT G K ++
Sbjct: 138 PYSYGPPIEDPQREPA-------------QPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 197 IIQYF 201
+
Sbjct: 185 MSTQV 189
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 305 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 94.21 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 93.13 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 92.81 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 91.34 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 91.3 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 88.86 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 88.28 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.51 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 86.22 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 84.14 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 84.01 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 83.21 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.35 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 81.58 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 81.32 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.2e-40 Score=305.58 Aligned_cols=280 Identities=15% Similarity=0.207 Sum_probs=219.8
Q ss_pred hhHHHHHHHhcccceeeecc------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 2 KAFLKLGLERYHSVCIIGFN------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
+.+|++.++++||+.++++. .+++||+||.++ ++++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 75 ~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~-v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Ga 153 (643)
T d1pg4a_ 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRD-VCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGA 153 (643)
T ss_dssp HHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCe
Confidence 34566667778887777642 247999999996 99999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHh--ccCCCccEEEEccCCCCCCC-----cccH
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVK--AQCPKLKAIVQYEGKPDKPG-----VISW 140 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~-----~~~~ 140 (305)
+++|+++.++.+++.+++++++++++|+++.. ......+.. ...+.+.+++.+........ ....
T Consensus 154 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 233 (643)
T d1pg4a_ 154 VHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWW 233 (643)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEH
T ss_pred EEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccchhh
Confidence 99999999999999999999999999997631 112222222 23566777777665443321 2223
Q ss_pred HHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHH-HHHhhccCCCCceEEEeCchhHH
Q psy2835 141 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHI 219 (305)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~~~ 219 (305)
.+........... ....++++++|+|||||||.||||++||++++..... ....+++ .++|++++..|++|+
T Consensus 234 ~~~~~~~~~~~~~------~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~ 306 (643)
T d1pg4a_ 234 RDLIEKASPEHQP------EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY-HPGDIYWCTADVGWV 306 (643)
T ss_dssp HHHHTTSCSCCCC------CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSH
T ss_pred hhhhcccCcccCC------CCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCC-CCCCEEEEeCChHHH
Confidence 3333322211111 2346799999999999999999999999997765444 4556788 999999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 220 AAQTVDIYSVMTVAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 220 ~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
+|+.+.++.+|..|+++++.+.. .++..+++.+++++||+++++|++++.|+++... ...++++||.+++
T Consensus 307 ~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~ 381 (643)
T d1pg4a_ 307 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGS 381 (643)
T ss_dssp HHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEE
Confidence 99887788999999999997642 3478999999999999999999999999886543 3567888875544
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-39 Score=301.40 Aligned_cols=281 Identities=13% Similarity=0.137 Sum_probs=219.3
Q ss_pred hhHHHHHHHhcccceeeecc------CCccchHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEecCChhHHHHHHHHHHcC
Q psy2835 2 KAFLKLGLERYHSVCIIGFN------APEWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~------~~~~Ty~el~~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G 74 (305)
..+|++.++++||..++.+. .+++||+||.++ ++++|++|+ ++|+++||+|+++++|+++++++++||+++|
T Consensus 62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~-v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~G 140 (640)
T d1ry2a_ 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEE-VCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIG 140 (640)
T ss_dssp HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHH-HHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCc
Confidence 46788888889997777642 257999999996 999999997 6799999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccCCCccEEEEccCCCCC------CCcccH
Q psy2835 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQCPKLKAIVQYEGKPDK------PGVISW 140 (305)
Q Consensus 75 ~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~ 140 (305)
++++|+++.++.+++.++++++++++++++... ....+.+.................... ......
T Consensus 141 av~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (640)
T d1ry2a_ 141 AIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDW 220 (640)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEH
T ss_pred eEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccc
Confidence 999999999999999999999999999998641 234445555555555555544433221 111112
Q ss_pred HHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH-HhhccCCCCceEEEeCchhHH
Q psy2835 141 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII-QYFKLESAALSVISFLPLSHI 219 (305)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~l~~~pl~~~ 219 (305)
............. .+..++++++|+|||||||.||||+++|++++.+..... ..+++ .++|++++.+|++|+
T Consensus 221 ~~~~~~~~~~~~~------~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~ 293 (640)
T d1ry2a_ 221 ATEKKKYKTYYPC------TPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT-HQEDVFFTAGDIGWI 293 (640)
T ss_dssp HHHHTTSCSCCCC------CCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC-CSSCEEEECSCTTSH
T ss_pred ccccccccccccc------CCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCC-Ccccceeeccchhhh
Confidence 2222221111111 234678999999999999999999999999888765544 35677 899999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH
Q psy2835 220 AAQTVDIYSVMTVAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 220 ~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~ 290 (305)
+|+.+.++.++..|+++++.+.. .++..+++.++++++|++.++|++++.|.+.... ...++++||.++.+
T Consensus 294 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~g 369 (640)
T d1ry2a_ 294 TGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSV 369 (640)
T ss_dssp HHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEEC
T ss_pred hhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEe
Confidence 99888788999999999987654 2368999999999999999999999999875433 45678888865543
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.1e-39 Score=291.73 Aligned_cols=287 Identities=18% Similarity=0.253 Sum_probs=232.5
Q ss_pred hHHHHHHHhcccceeeeccC----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIGFNA----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
++|++.++++||+.++.+.+ +++||+||.++ ++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 15 ~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~-~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~v 93 (534)
T d1v25a_ 15 DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQR-ARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLH 93 (534)
T ss_dssp HHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHH-HHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEE
Confidence 68999999999987776522 36999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 79 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 79 ~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
|++|.++.+++.++++..++++++++... ......+....+.++..+...+.... ...... .. .......
T Consensus 94 pl~~~~~~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~------ 163 (534)
T d1v25a_ 94 TANPRLSPKEIAYILNHAEDKVLLFDPNL-LPLVEAIRGELKTVQHFVVMDEKAPE-GYLAYE-EA-LGEEADP------ 163 (534)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHGGGCSSCCEEEESSSCCCT-TCEEHH-HH-CCSCCCC------
T ss_pred ecCCCCCHHHHHHHHHhhccccccccchh-hhhHHHHhhcccccceeEEeeccccc-cccccc-cc-ccccccc------
Confidence 99999999999999999999999999884 57777778888888887765554321 111111 11 1111111
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH--hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ--YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~--~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
....++++++|+|||||||.||||+++|.++..+...... .... ...|++++.+|++|..+... .+..+..|++.
T Consensus 164 -~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~~~~~-~~~~~~~g~~~ 240 (534)
T d1v25a_ 164 -VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL-SEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQ 240 (534)
T ss_dssp -CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCC-CTTCEEEECSCTTSHHHHTH-HHHHHHHTCEE
T ss_pred -cccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhccccc-ccccccccccchhhhccccc-cceeeeeccee
Confidence 1346789999999999999999999999999876644333 3344 78899999999999988877 56677777777
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH----------HHHHHhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~----------~~a~~~g~~~~~~~ 303 (305)
++.....++..+...++++++|++.++|.++..+++.......++++||.+++ .+.++.|.++++.|
T Consensus 241 v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~y 317 (534)
T d1v25a_ 241 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGY 317 (534)
T ss_dssp EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEE
T ss_pred eeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHhCCeeeeec
Confidence 77666555789999999999999999999999999998888889999986544 45556677766655
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.8e-37 Score=280.73 Aligned_cols=274 Identities=14% Similarity=0.170 Sum_probs=220.3
Q ss_pred hhHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
-++|++.++++||+.++.+.++++||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 28 ~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~-v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~ 106 (536)
T d1mdba_ 28 GDLLRDRAAKYGDRIAITCGNTHWSYRELDTR-ADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106 (536)
T ss_dssp HHHHHHHHHHHTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHCCCCeEEEECCEeEcHHHHHHH-HHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecC
Confidence 37899999999999999899999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHH
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
|+.+.+++.+++++++++++++++.. ............+.+...+..... .....++++... ....
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~---- 176 (536)
T d1mdba_ 107 PSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA---EEFLPLEDLHTE---PVKL---- 176 (536)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC---TTSEEGGGCCCC---CCCC----
T ss_pred CCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecc---ccccchhhcccC---CcCC----
Confidence 99999999999999999999997632 112222223334444444432222 112222222111 1111
Q ss_pred hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHh-CcEE
Q psy2835 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTV-AATL 236 (305)
Q Consensus 158 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~-G~~~ 236 (305)
.+..++++++|+|||||||.||+|++||+++..++......+++ ..+|++++..|++|.+|+...++..+.. |.++
T Consensus 177 --~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~ 253 (536)
T d1mdba_ 177 --PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWL-DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRV 253 (536)
T ss_dssp --CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEE
T ss_pred --CccCccchHHhhhcccccccceeccccccccccccccccccccc-ccccccccccccccccceeeccccccccccccc
Confidence 13567899999999999999999999999999999998899999 9999999999999999876544555554 5666
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+..+.++ +..++..+++++++.+..+|..+..+..........+++++.++.+
T Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (536)
T d1mdba_ 254 VLSPSPS-PDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVG 306 (536)
T ss_dssp EECSSSS-HHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEE
T ss_pred cccCCCC-HHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEe
Confidence 6665554 7999999999999999999999999999888888888887765554
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=8.8e-38 Score=283.12 Aligned_cols=282 Identities=16% Similarity=0.213 Sum_probs=225.5
Q ss_pred hHHHHHHHhc---ccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERY---HSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~---~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++|.+.++++ |+..++.+ .++++||+||.++ ++++|++|.++|+++||+|+++++|+++++++++||+++|+++
T Consensus 21 ~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~-~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~ 99 (541)
T d1lcia_ 21 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEM-SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAV 99 (541)
T ss_dssp HHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHH-HHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEE
Confidence 4667777777 55555544 3468999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhH-
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD- 156 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 156 (305)
+|+++.++.+++.++++.++++++|++.+ ..+.+.++..+++..+.+++++......+...+.+..............
T Consensus 100 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T d1lcia_ 100 APANDIYNERELLNSMNISQPTVVFVSKK-GLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF 178 (541)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGG-GHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTCCTTTC
T ss_pred EecCCCCCHHHHHHHHHhccceEEeeecc-ccccchhccccccccceeeeecCCccccccchhhhhhhhhcccccccccc
Confidence 99999999999999999999999999987 4788888889999999999888766556666666655443221111110
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhC
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVA 233 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G 233 (305)
.......++++++|+|||||||.||+|++||+++........... .+ ..++++++.+|++|..+... .+..+..|
T Consensus 179 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~-~~~~~~~~ 256 (541)
T d1lcia_ 179 VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI-IPDTAILSVVPFHHGFGMFT-TLGYLICG 256 (541)
T ss_dssp CCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHHHH-HHHHHHHT
T ss_pred CccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccc-cccccccccccccccccccc-cccccccc
Confidence 111234668999999999999999999999999988777655443 34 77899999999999988766 67777788
Q ss_pred cEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 234 ATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 234 ~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
+..+...... +......+.++++|.+.++|.++..+++.......+++++|.++.
T Consensus 257 ~~~~~~~~~~-~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~ 311 (541)
T d1lcia_ 257 FRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 311 (541)
T ss_dssp CEEEECSSCC-HHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEEC
T ss_pred cccccccccc-cchhHHHHhhhhccccccCccccccccccccccccccccceEEEe
Confidence 8888777666 588899999999999999999999999887777777777765544
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=3.9e-35 Score=262.65 Aligned_cols=271 Identities=12% Similarity=0.127 Sum_probs=213.8
Q ss_pred hhHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEe
Q psy2835 2 KAFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG 79 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~ 79 (305)
.++|++.++++||+.++.+ .++++||+||.++ ++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 5 ~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~-~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vp 83 (503)
T d3cw9a1 5 NEMLRRAATRAPDHCALAVPARGLRLTHAELRAR-VEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL 83 (503)
T ss_dssp HHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHH-HHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEE
Confidence 3789999999999877765 3568999999996 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 80 MYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 80 i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
++|.++.+++.++++++++++++++.... ............ .++.+ .++.......... .+...
T Consensus 84 i~~~~~~~~i~~~l~~~~~~~~i~~~~~~--~~~~~~~~~~~~-~~i~~------------~~~~~~~~~~~~~-~~~~~ 147 (503)
T d3cw9a1 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQ--VADAIFQSGSGA-RIIFL------------GDLVRDGEPYSYG-PPIED 147 (503)
T ss_dssp ECTTSCHHHHHHHHHHTTCSEEEESSCHH--HHHHHHHTTCCC-EEEEH------------HHHEETTEECCCS-CCCCC
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEeecchH--HHHHHhhhcccc-ccccc------------hhhhhhhcccccC-Ccccc
Confidence 99999999999999999999999987632 222222223222 33322 2222111100000 00001
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC-CCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
....++++++++|||||||.||+|.++|+++..+.......+... ...+++++.+|++|..+.....+.+...++.+++
T Consensus 148 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (503)
T d3cw9a1 148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (503)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEE
T ss_pred ccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccccc
Confidence 234678999999999999999999999999999998877765442 5568999999999888887777888888888888
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh--hcccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV--GKQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~~~sl~~~~~~ 290 (305)
.+... +..+...+.+++++.+..+|..+..+....... ..++++||.++++
T Consensus 228 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~g 280 (503)
T d3cw9a1 228 VEEFR-PVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280 (503)
T ss_dssp CSSCC-HHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEEC
T ss_pred ccccC-hHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEec
Confidence 87776 789999999999999999999999988765543 4446777765554
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=7.3e-34 Score=255.77 Aligned_cols=254 Identities=16% Similarity=0.172 Sum_probs=199.3
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++||+.++.++++++||+||.++ ++++|.+|+++|+++||+|+++++|+.+++++++||+++|++++|+++
T Consensus 27 ~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~ 105 (514)
T d1amua_ 27 QLFEEQVSKRPNNVAIVCENEQLTYHELNVK-ANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 105 (514)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHhCCCCeEEEECCeeEcHHHHHHH-HHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCC
Confidence 6899999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++.+++++++++... .+.+... ... .......... ......... ..+.
T Consensus 106 ~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~---~~~-~~~~~~~~~~------------~~~~~~~~~-----~~p~ 163 (514)
T d1amua_ 106 EYPKERIQYILDDSQARMLLTQKHL-VHLIHNI---QFN-GQVEIFEEDT------------IKIREGTNL-----HVPS 163 (514)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGG-HHHHTTS---CCC-SEEEECCCST------------TTTSCCSCC-----CCCC
T ss_pred CCCHHHHHHHHhccCCcEEEEehhh-hhhhhhh---ccc-cccccccccc------------ccccccccC-----CCCC
Confidence 9999999999999999999999773 2332221 111 1111111110 000000110 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||+|.+||.++..........+++ ..+|++++..|++|..++.. ++.++..|+++++....
T Consensus 164 ~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~ 241 (514)
T d1amua_ 164 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNV-TEKDRIGQFASISFDASVWE-MFMALLTGASLYIILKD 241 (514)
T ss_dssp CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCC-CTTCEEEECSCTTSTHHHHH-HHHHHTTTCEEEECCHH
T ss_pred CcccceEEEEccCCCCCcccccccccccccccccccccccc-cccccccceecccccccccc-ccccccccccccccccc
Confidence 67899999999999999999999999999999999999998 99999999999999988755 78888899999987644
Q ss_pred cc--hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH
Q psy2835 243 AL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW 287 (305)
Q Consensus 243 ~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~ 287 (305)
.. ...+++.+..+.++.+..+|..+... ...++++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~ 282 (514)
T d1amua_ 242 TINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTL 282 (514)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEE
T ss_pred cccchhhhhhhhhhhhcccccceeeecccc------cccccccccEE
Confidence 32 36678899999999999999865532 23455655544
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=94.21 E-value=0.13 Score=43.87 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=78.9
Q ss_pred CceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
+.|+.+.++.+.+| ..+|++.+...+..+... .++ .++|++...++-+-- ++..+++++..|+..+..+.
T Consensus 32 ~~P~~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi-~~Gd~Vai~~~ns~e--~~v~~lA~~~~G~i~vpl~~ 104 (541)
T d1lcia_ 32 LVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGL-NTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPAND 104 (541)
T ss_dssp TSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEEECSSCSS--THHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCc-CCCCEEEEEeCCCHH--HHHHHHHHHHhCeEEEecCC
Confidence 34455556665555 468999999987766554 467 899999888876542 23447899999999998887
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 274 (305)
...++++...++..+++.++.....+..+.+..
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 137 (541)
T d1lcia_ 105 IYNERELLNSMNISQPTVVFVSKKGLQKILNVQ 137 (541)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHhccceEEeeeccccccchhcc
Confidence 776789999999999999999998887776643
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=93.13 E-value=0.75 Score=38.85 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=79.9
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...+|.++++...+|- .-.+|++.+...+..+... .++ +++|++...++-+.- ++..+++++..|+..+
T Consensus 22 ~~~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~v 93 (534)
T d1v25a_ 22 ALFGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGV-GVGDRVATLGFNHFR--HLEAYFAVPGMGAVLH 93 (534)
T ss_dssp HHSTTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred HHcCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCc-CCCCEEEEEeCCCHH--HHHHHHHHHHhCcEEE
Confidence 4467888877665542 3358999999987766654 467 899999998887653 3455899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
..+....++.+...++..++..+...+.....+.
T Consensus 94 pl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 127 (534)
T d1v25a_ 94 TANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 127 (534)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred ecCCCCCHHHHHHHHHhhccccccccchhhhhHH
Confidence 8887766789999999999999998887766654
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=92.81 E-value=0.48 Score=39.39 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=72.5
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...+|.++++.-.+| ..+|++.+...+..+... .++ .++|++...++-+. .++..+++++..|+..+
T Consensus 13 ~~~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv-~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~v 82 (503)
T d3cw9a1 13 TRAPDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGL-RPQQRVAVVAPNSA--DVVIAILALHRLGAVPA 82 (503)
T ss_dssp HHSTTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSCH--HHHHHHHHHHHHTCEEE
T ss_pred HhCCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCc-CCCCEEEEEeCCCH--HHHHHHHHHHHhCcEEE
Confidence 447788887664443 358999998877666554 467 88999988888655 23444899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
..+....++.+...+++.++..+.....
T Consensus 83 pi~~~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 83 LLNPRLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEESSC
T ss_pred EeCCCCCHHHHHHHHHhcCCcEEEeecc
Confidence 8887766788999999999999876543
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=91.34 E-value=1.6 Score=36.32 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=76.8
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...||.+|++. . +-.+|+..+...+..+... .++ .++|++...+|-+.-+ +..+++++..|+..+
T Consensus 34 ~~~Pd~~Al~~--~-------~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~gd~Vai~~~n~~~~--v~~~la~~~~G~v~v 101 (514)
T d1amua_ 34 SKRPNNVAIVC--E-------NEQLTYHELNVKANQLARIFIEKGI-GKDTLVGIMMEKSIDL--FIGILAVLKAGGAYV 101 (514)
T ss_dssp HHCTTSEEEEE--T-------TEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHHH--HHHHHHHHHTTCEEE
T ss_pred HhCCCCeEEEE--C-------CeeEcHHHHHHHHHHHHHHHHHcCc-CCcCEEEEEeCCCHHH--HHHHHHHHHhCcEEE
Confidence 45788998874 1 2369999999988776654 477 8999999988877633 444899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
..+....++.+...++..++..++..+.....+
T Consensus 102 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 134 (514)
T d1amua_ 102 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134 (514)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred EeCCCCCHHHHHHHHhccCCcEEEEehhhhhhh
Confidence 888776678899999999999999887665544
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=91.30 E-value=1 Score=39.28 Aligned_cols=96 Identities=6% Similarity=0.087 Sum_probs=73.6
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.+|.+|+|.. +-.+|. .-.+|++.|...+..+... .++ .++|++...+|-+.-+ +..+++++..|+..+.+
T Consensus 85 ~~d~~Ali~~-~~~~~~--~~~~TY~eL~~~v~~~A~~L~~~Gv-~~Gd~V~i~~~n~~e~--iv~~lA~~~~Gav~v~l 158 (643)
T d1pg4a_ 85 NGDRTAIIWE-GDDTSQ--SKHISYRELHRDVCRFANTLLDLGI-KKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVI 158 (643)
T ss_dssp HTTSEEEEEE-CSSTTC--EEEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEE-ecCCCC--ceEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEecccchHH--HHHHHHHHHhCeEEEec
Confidence 5688887654 323332 3368999999987776655 477 8999999999987633 34489999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.....++.+...+++.++.+++..+
T Consensus 159 ~~~~~~~~l~~~l~~~~~~~li~~~ 183 (643)
T d1pg4a_ 159 FGGFSPEAVAGCIIDSSSRLVITAD 183 (643)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcc
Confidence 8777789999999999999887643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.86 E-value=1.9 Score=30.10 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=43.9
Q ss_pred HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 40 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 40 ~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+.+++.++++||.|+|+..-..-...++++. ..|+ .++.++.+ ++-..+.++.+++.++...+
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~-~~G~~~Vi~~d~~---~~rl~~a~~~Ga~~~~~~~~ 80 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDLS---ATRLSKAKEIGADLVLQISK 80 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC---HHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHHH-HcCCceEEeccCC---HHHHHHHHHhCCcccccccc
Confidence 4456678999999999987555555555554 5676 56666655 44455677889988887654
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.28 E-value=2.9 Score=36.05 Aligned_cols=97 Identities=9% Similarity=0.123 Sum_probs=73.6
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh----hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
..+|.+|+|.. +..+| ..-.+|++.+...+..+... +++ .++|++...+|-+-- .+..+++++..|+..+
T Consensus 71 ~~pd~~Ali~~-~~~~g--~~~~~Ty~eL~~~v~~~A~~L~~~~Gv-~~Gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v 144 (640)
T d1ry2a_ 71 KTPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTYSMGV-RKGDTVAVYMPMVPE--AIITLLAISRIGAIHS 144 (640)
T ss_dssp TCTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCC-CTTCEEEECCCSSHH--HHHHHHHHHHTTCEEE
T ss_pred hCCCCEEEEEE-ecCCC--CeeEEeHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeCCCHH--HHHHHHHhccCceEee
Confidence 46788887754 33334 34578999998877665543 467 899999999887653 3445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEech
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.......++.+...++..++..+...+
T Consensus 145 pi~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (640)
T d1ry2a_ 145 VVFAGFSSNSLRDRINDGDSKVVITTD 171 (640)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred cCCCCCCHHHHHHHHHhhhccccccch
Confidence 888776678899999999999887754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.51 E-value=1.7 Score=31.40 Aligned_cols=61 Identities=10% Similarity=-0.027 Sum_probs=42.4
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+...++++||.|+|+..-..-...+.+|...-+..++..+++ ++..++.++.+++.++...
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~---~~rl~~a~~~Ga~~~~~~~ 78 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN---PARLAHAKAQGFEIADLSL 78 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTTCEEEETTS
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc---chhhHhhhhccccEEEeCC
Confidence 556799999999999765555565666555444466666655 4455667888999887643
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=86.22 E-value=3.9 Score=33.99 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=69.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..+|.+|++- |. -.+|++.+...+..+... .++ .++|++...+|-+. .++..+++++..|+..+.
T Consensus 37 ~~pd~~Al~~---~~------~~~Ty~el~~~v~~~A~~L~~~Gv-~~gd~V~i~~~n~~--~~~v~~lA~~~~G~i~vp 104 (536)
T d1mdba_ 37 KYGDRIAITC---GN------THWSYRELDTRADRLAAGFQKLGI-QQKDRVVVQLPNIK--EFFEVIFALFRLGALPVF 104 (536)
T ss_dssp HHTTSEEEEE---TT------EEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEECCCSSH--HHHHHHHHHHHHTCEEEE
T ss_pred HCCCCeEEEE---CC------EeEcHHHHHHHHHHHHHHHHHcCc-CCcCEEEEEeCCCH--HHHHHHHHHHHhCcEEEe
Confidence 3578888764 21 368999999877766554 467 89999999888764 334558999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEec
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
.+....++.+...++..++..+...
T Consensus 105 l~~~~~~~~~~~~l~~~~~~~~~~~ 129 (536)
T d1mdba_ 105 ALPSHRSSEITYFCEFAEAAAYIIP 129 (536)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEE
T ss_pred cCCCCCHHHHHHHHHhhccceEecc
Confidence 9877777888899999999887664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.14 E-value=2.8 Score=28.94 Aligned_cols=63 Identities=17% Similarity=0.025 Sum_probs=42.9
Q ss_pred HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 40 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 40 ~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+.++..++++||+|++...-+.-...+.+ +...|+.++.++.+ + +-...+++.+++.++...+
T Consensus 18 ~al~~~~~~~g~~vlv~G~G~iG~~a~~~-a~~~g~~v~~~~~~--~-~r~~~~k~~Ga~~~~~~~~ 80 (168)
T d1rjwa2 18 KALKVTGAKPGEWVAIYGIGGLGHVAVQY-AKAMGLNVVAVDIG--D-EKLELAKELGADLVVNPLK 80 (168)
T ss_dssp HHHHHHTCCTTCEEEEECCSTTHHHHHHH-HHHTTCEEEEECSC--H-HHHHHHHHTTCSEEECTTT
T ss_pred HHHHHhCCCCCCEEEEeecccchhhhhHH-HhcCCCeEeccCCC--H-HHhhhhhhcCcceeccccc
Confidence 34566789999999999876665554444 44577776655543 3 3345678889998887654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=84.01 E-value=2.6 Score=29.27 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=41.2
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.+++.++++||+|+|+..-..-.+.++++ -..|+.++.++.+ ++-.++.++.+++..+...
T Consensus 18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~---~~r~~~a~~~ga~~~~~~~ 78 (170)
T d1e3ja2 18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARS---PRRLEVAKNCGADVTLVVD 78 (170)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESC---HHHHHHHHHTTCSEEEECC
T ss_pred HHHHhCCCCCCEEEEEcccccchhhHhhH-hhhcccccccchH---HHHHHHHHHcCCcEEEecc
Confidence 35567999999999997544455544444 5678888877654 4445566777887766543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=83.21 E-value=1.9 Score=30.19 Aligned_cols=59 Identities=8% Similarity=-0.152 Sum_probs=44.5
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
...++++||.|+|+.....-...++++....+..++.++.+ ++-.+..++.+++.++-.
T Consensus 22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~---~~rl~~a~~~GAd~~in~ 80 (175)
T d1cdoa2 22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN---PDKFEKAKVFGATDFVNP 80 (175)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC---GGGHHHHHHTTCCEEECG
T ss_pred HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecch---HHHHHHHHHcCCcEEEcC
Confidence 34589999999999987777777777777777677777665 334456778889888864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.35 E-value=3.1 Score=28.72 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=42.6
Q ss_pred HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 40 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 40 ~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+.+++.++++||+|+|...-..-...+.+ +-..|+.++.++.+ ++-.+..++.+++.++...+
T Consensus 18 ~al~~~~~~~g~~VlV~GaG~vG~~~~~~-ak~~G~~Vi~~~~~---~~~~~~a~~~Ga~~~i~~~~ 80 (166)
T d1llua2 18 KGLKQTNARPGQWVAISGIGGLGHVAVQY-ARAMGLHVAAIDID---DAKLELARKLGASLTVNARQ 80 (166)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESC---HHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHhCCCCCCEEEEeeccccHHHHHHH-HHHcCCccceecch---hhHHHhhhccCccccccccc
Confidence 34566789999999999875555554444 45568887777644 33445677888888775443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.58 E-value=6.4 Score=27.27 Aligned_cols=59 Identities=14% Similarity=-0.055 Sum_probs=40.1
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 45 LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.++++||+|+|..-.+.--..+...+-..|+.++.+..+ + +-.+.+++.+++.++-..+
T Consensus 24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~--~-~~~~~~~~~Ga~~vi~~~~ 82 (174)
T d1yb5a2 24 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT--E-EGQKIVLQNGAHEVFNHRE 82 (174)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS--H-HHHHHHHHTTCSEEEETTS
T ss_pred hCCCCCCEEEEEeccccccccccccccccCccccccccc--c-cccccccccCccccccccc
Confidence 478999999999865544444444446778887766633 3 3446677889988886543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=81.32 E-value=3.3 Score=28.85 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=41.5
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+++||.|+|...-..-...+.++...-+..++..+.+ ++-.+.+++.+++.++...+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~---~~k~~~~~~~ga~~~i~~~~ 86 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK---EEKLKLAERLGADHVVDARR 86 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS---HHHHHHHHHTTCSEEEETTS
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccch---hHHHHHHhhcccceeecCcc
Confidence 47899999999987777777777766555566666554 34556677788888776554
|