Psyllid ID: psy2841

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM
Secondary Structure (PSIPRED)
ccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccccccHHHHHHccccHHHHccccEEEccccccccHHHHHHHHHHHHHHHcccEEcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccEEEcccEEEccEEcccccccHHHHHHccccHHHcccEEEEEccccccccHHHHHHHHHHHHHHHHcEEEEccccccccccccccHHHHHHHHHHccccccccccccccccEEccHHHHHccHHHEEcc
Coil and Loop (DISEMBL)
MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAkeiaprpaagplrpivrcptvryhkrvragrgfTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSklivfprrekkklrkgeatpeeRKVATqlkgplmpirqskpkskaripseaEKKFSAFQTLRM
Flexible Loop (DISEMBL)
mipnahfhkdwqkYIKCWFNQPARKFRRRQARIKkakeiaprpaagplrpivrcptvryhkrvragrgftleeirgaglnarfarsvgiavdarrrsksmesLQLNiqrlkeyksklivfprrekkklrkgeatpeerkvatqlkgplmpirqskpkskaripseaekkfsafqtlrm
Low Complexity Region (SEG)
MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM
Disordered region (IsUnstruct)
*****HFHKDWQKYIKCWFNQPARKFR******************GPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVD**************************************************************************************
Disordered Region (DISOPRED)
MIPNAHFHKDWQKYIKCWFNQ*****************IAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF********************ATQLKGPLMPIRQ****************FSAFQTLRM
Disordered Region (DISEMBL)
MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRRE****************ATQLKGPLMPIR**************EKKFSAFQTLRM
Disordered Region (DISPRO)
*IPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRRE**********PEERKV*T**KGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q962U1	219	60S ribosomal protein L13	N/A	N/A	0.983	0.799	0.700	3e-70
P41126	218	60S ribosomal protein L13	yes	N/A	0.988	0.807	0.629	1e-60
Q90Z10	211	60S ribosomal protein L13	yes	N/A	0.994	0.838	0.646	4e-60
P41125	211	60S ribosomal protein L13	yes	N/A	0.994	0.838	0.662	3e-59
Q90YV5	211	60S ribosomal protein L13	N/A	N/A	0.994	0.838	0.657	3e-58
P47963	211	60S ribosomal protein L13	yes	N/A	0.994	0.838	0.640	5e-57
P26373	211	60S ribosomal protein L13	yes	N/A	0.994	0.838	0.629	1e-56
P41123	211	60S ribosomal protein L13	yes	N/A	0.994	0.838	0.640	1e-56
Q56JZ1	211	60S ribosomal protein L13	yes	N/A	0.994	0.838	0.634	2e-56
Q9Z313	211	60S ribosomal protein L13	yes	N/A	0.994	0.838	0.634	6e-56

>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1

 Score =  264 bits (674), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 124/177 (70%), Positives = 151/177 (85%), Gaps = 2/177 (1%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPAR+ RR+Q RIKKAK +APRPAAGPLRP+VRCPT+RYH
Sbjct: 7   MIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTL EIR AGLN  FAR++GIAVD RRR+KS+ESLQ+N+QRLKEY+++LI+F
Sbjct: 67  TKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P+   KK+ KGEA  EERK+ATQL+GPLMP++Q  PKS AR  +E EK F A+Q LR
Sbjct: 127 PK--GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLR 181

Spodoptera frugiperda (taxid: 7108)

>sp|P41126|RL13_DROME 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=2 SV=1

 Score =  232 bits (591), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 145/178 (81%), Gaps = 2/178 (1%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN H+HK WQ+++K WFNQPARK RR   R+KKAK + PRPA+G LRP+VRCPT+RYH
Sbjct: 7   MIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            ++RAGRGFTLEE++GAG+ A FA+++GIAVD RR++KS+ES Q NIQRLKEY+SKLI+F
Sbjct: 67  TKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPK-SKARIPSEAEKKFSAFQTLR 177
           P  E KK+R GE++ EE K+ATQLKGP++PI+  +P   + R  ++ EKKF AF TLR
Sbjct: 127 PINE-KKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLR 183

Drosophila melanogaster (taxid: 7227)

>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3

 Score =  230 bits (586), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/178 (64%), Positives = 147/178 (82%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MI N HFHKDWQK ++ WFNQPARK RRR+AR  KA+ IAPRP +GPLRP+VRCPT+RYH
Sbjct: 8   MILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTLEE++ AG+N + AR++GI+VD+RRR++S ESLQ N+QRLKEY++KLI+F
Sbjct: 68  TKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR+  K  +KG++T EE K+ATQL GP+MPI++   K KAR+ SE EK F AF +LRM
Sbjct: 128 PRKAAKP-KKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRM 184

Danio rerio (taxid: 7955)

>sp|P41125|RL13_CHICK 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2

 Score =  227 bits (579), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/178 (66%), Positives = 145/178 (81%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRP AGP+RPIVRCPTVRYH
Sbjct: 8   MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
           K+VRAGRGF+LEE++ AG+N RFAR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68  KKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR+     +KG+++PEE K+ATQL GP+MPIR    + KAR+ SE EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRM 184

Gallus gallus (taxid: 9031)

>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3

 Score =  224 bits (570), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/178 (65%), Positives = 144/178 (80%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MI N HFHKDWQK ++ WFNQPARK RRR+AR  KA+ IAPRP AGPLRPIVRCPTVRY+
Sbjct: 8   MILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYN 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTLEE++ AG+N R AR++GIAVD RRR++S ESL +N+QRLK Y+SKLI+F
Sbjct: 68  TKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR+     +KG++T EE K+ATQL GP+MPI+    K KAR+ +E EKKF+AF  LRM
Sbjct: 128 PRKVSAP-KKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRM 184

Ictalurus punctatus (taxid: 7998)

>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3

 Score =  220 bits (560), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 114/178 (64%), Positives = 143/178 (80%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8   MILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68  TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR+     +KG+++ EE K+ATQL GP+MPIR    K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184

Mus musculus (taxid: 10090)

>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4

 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 143/178 (80%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           M+   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8   MVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68  TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR+     +KG+++ EE K+ATQL GP+MP+R    K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRM 184

Homo sapiens (taxid: 9606)

>sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2

 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/178 (64%), Positives = 142/178 (79%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8   MILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68  TKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR+     +KG+++ EE K+ATQL GP+MPIR    K KAR  +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRM 184

Rattus norvegicus (taxid: 10116)

>sp|Q56JZ1|RL13_BOVIN 60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 142/178 (79%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GPLRP+VRCPTVRYH
Sbjct: 8   MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+K  ESLQ N+QRLKEY+SKLI+F
Sbjct: 68  TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR+     +KG+++ EE K+ATQL GP+MPIR    K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184

Bos taurus (taxid: 9913)

>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3

 Score =  216 bits (550), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 142/178 (79%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct: 8   MILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct: 68  TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR+     +KG+++ EE K+ATQL GP+M IR    K KAR+ +E EK F AF +LRM
Sbjct: 128 PRKPSAP-KKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRM 184

Cricetulus griseus (taxid: 10029)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
110671512	221	putative ribosomal protein L13 [Diaphori	1.0	0.805	1.0	1e-97
389032521	220	60S ribosomal protein L13 [Ctenocephalid	0.988	0.8	0.762	1e-72
121511988	221	ribosomal protein L13 [Xenopsylla cheopi	0.994	0.800	0.734	2e-72
332373968	220	unknown [Dendroctonus ponderosae]	0.994	0.804	0.728	1e-71
315115439	220	ribosomal protein L13 [Euphydryas aurini	0.983	0.795	0.728	1e-70
342356427	220	ribosomal protein L13 [Heliconius melpom	0.983	0.795	0.717	4e-70
121543781	224	putative ribosomal protein L13 [Maconell	0.994	0.790	0.711	5e-70
268306480	221	ribosomal protein L13 [Manduca sexta]	0.983	0.791	0.717	3e-69
357628253	221	ribosomal protein L13 [Danaus plexippus]	0.983	0.791	0.706	3e-69
389608123	221	ribosomal protein L13 [Papilio xuthus] g	0.983	0.791	0.706	5e-69

>gi|110671512|gb|ABG82007.1| putative ribosomal protein L13 [Diaphorina citri]

 Score =  360 bits (924), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH
Sbjct: 8   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
           KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF
Sbjct: 68  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM
Sbjct: 128 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 185

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389032521|gb|AFK82397.1| 60S ribosomal protein L13 [Ctenocephalides felis]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 154/177 (87%), Gaps = 1/177 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPARK RRRQ RIKKA+ + PRPAAGPLRPIV CPTVRYH
Sbjct: 7   MIPNGHFHKDWQRFVKTWFNQPARKIRRRQNRIKKARALFPRPAAGPLRPIVHCPTVRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTLEEIRGAGLNA FARS+GIA+D RRR+KS+ESLQ NIQRLKEY+SKLI+F
Sbjct: 67  TKVRAGRGFTLEEIRGAGLNAGFARSIGIALDVRRRNKSVESLQQNIQRLKEYRSKLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P R  KKL KGEAT EE KVA+QL+G +MPI+Q+  KSKAR+ +E EKKFSAF TLR
Sbjct: 127 P-RGGKKLHKGEATEEECKVASQLEGVVMPIKQTSVKSKARVITEDEKKFSAFTTLR 182

Source: Ctenocephalides felis

Species: Ctenocephalides felis

Genus: Ctenocephalides

Family: Pulicidae

Order: Siphonaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121511988|gb|ABM55445.1| ribosomal protein L13 [Xenopsylla cheopis]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/177 (73%), Positives = 155/177 (87%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPARK RRRQ RIKKA+ I PRPA+G LRPIV CPTVRYH
Sbjct: 7   MIPNGHFHKDWQRFVKTWFNQPARKIRRRQNRIKKARAIFPRPASGALRPIVHCPTVRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTLEE++GAGL+A FARS+GIA+D RRR+KS+ESLQ N+QRLKEY+SKLI+F
Sbjct: 67  TKVRAGRGFTLEEVKGAGLSAGFARSIGIALDRRRRNKSVESLQKNVQRLKEYRSKLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           PR EKKKLRKGEAT +E KVATQL+G +MPI+Q+  ++KAR+ +E EKKFSAF  LR
Sbjct: 127 PRHEKKKLRKGEATEDECKVATQLQGIVMPIKQTAVRTKARVVTEDEKKFSAFTALR 183

Source: Xenopsylla cheopis

Species: Xenopsylla cheopis

Genus: Xenopsylla

Family: Pulicidae

Order: Siphonaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373968|gb|AEE62125.1| unknown [Dendroctonus ponderosae]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/177 (72%), Positives = 151/177 (85%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPARKFRR Q R+KKAK IAPRP AGPLRP+VRCPTVRYH
Sbjct: 8   MIPNGHFHKDWQRFVKTWFNQPARKFRRHQTRVKKAKAIAPRPVAGPLRPVVRCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTL+E++ AGLN RFA+S GIAVD RRR+KS+ES+QLN QRLKEYKSKLI+F
Sbjct: 68  TKVRAGRGFTLQELKAAGLNRRFAKSTGIAVDPRRRNKSVESVQLNAQRLKEYKSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P   KKKLR GEAT EERKVATQL G ++PIRQ   K+KAR+P+E +KK + + TLR
Sbjct: 128 PIHPKKKLRAGEATEEERKVATQLLGEVLPIRQPTIKTKARVPNEEDKKLNVYVTLR 184

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115439|gb|ADT80692.1| ribosomal protein L13 [Euphydryas aurinia]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/177 (72%), Positives = 151/177 (85%), Gaps = 2/177 (1%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPARK RR+Q RIKKAK IAPRPAAGPLRP+VRCPTVRYH
Sbjct: 7   MIPNGHFHKDWQRFVKTWFNQPARKHRRKQNRIKKAKAIAPRPAAGPLRPVVRCPTVRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTL EIR AGLN  FAR++GIA+D RRR+KS+ESLQ N+QRLKEY+++LI+F
Sbjct: 67  TKVRAGRGFTLREIRAAGLNPAFARTIGIAIDPRRRNKSVESLQTNVQRLKEYRARLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P+   KK+ KGEA  EERKVATQL GPLMPI+QS PKS AR+ +E EK F A+Q LR
Sbjct: 127 PK--GKKVLKGEANEEERKVATQLSGPLMPIQQSAPKSVARVITEEEKDFKAYQYLR 181

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342356427|gb|AEL28872.1| ribosomal protein L13 [Heliconius melpomene cythera]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/177 (71%), Positives = 151/177 (85%), Gaps = 2/177 (1%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPARK RRRQ R+KKAK IAPRP AGPLRP+VRCPTVRYH
Sbjct: 7   MIPNGHFHKDWQRFVKTWFNQPARKHRRRQNRVKKAKAIAPRPVAGPLRPVVRCPTVRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTL EIR AGLN  FAR+VGI+VD RRR+KS+ESLQ+N+QRLKEY+++LI+F
Sbjct: 67  TKVRAGRGFTLREIRAAGLNPAFARTVGISVDPRRRNKSVESLQINVQRLKEYRARLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P+   KK+ KGEA+ EERKVATQL+GPLMP+ Q  PKS AR+ +E EK F A+Q LR
Sbjct: 127 PK--GKKVLKGEASEEERKVATQLRGPLMPVEQPAPKSSARVITEEEKDFKAYQYLR 181

Source: Heliconius melpomene cythera

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543781|gb|ABM55560.1| putative ribosomal protein L13 [Maconellicoccus hirsutus]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/177 (71%), Positives = 151/177 (85%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQKYIK WFNQPARKFRR +AR++KAK +APRPAAGPLRPIV CPTVRYH
Sbjct: 8   MIPNGHFHKDWQKYIKTWFNQPARKFRRHKARVQKAKSVAPRPAAGPLRPIVHCPTVRYH 67

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VR GRGFTLEEI+ AGL+ +FARS+GIAVD RRR+KS+ESLQ+N+QRLKEYKSKLI+F
Sbjct: 68  TKVRPGRGFTLEEIKAAGLSKQFARSIGIAVDHRRRNKSVESLQVNVQRLKEYKSKLILF 127

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P+   KKLRKGEA+ EERKVA+QLKG ++PI+Q K   K R  +  EK+F+AF  ++
Sbjct: 128 PKHANKKLRKGEASEEERKVASQLKGEVLPIKQGKQLVKPRAITAGEKRFNAFSVVK 184

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|268306480|gb|ACY95361.1| ribosomal protein L13 [Manduca sexta]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/177 (71%), Positives = 151/177 (85%), Gaps = 2/177 (1%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPAR+ RR+Q RIKKAK IAPRPAAGPLRP+VRCPTVRYH
Sbjct: 7   MIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAIAPRPAAGPLRPVVRCPTVRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTL EIR AGLN  FAR++GIAVD RRR+KS+ESLQ+N+QRLKEY+++LI+F
Sbjct: 67  TKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P+   KK+ KGEA  EERKVATQLKGPLMP++Q  PKS AR  ++ EK F A+Q LR
Sbjct: 127 PK--GKKVLKGEANEEERKVATQLKGPLMPVQQPAPKSVARPITDEEKDFKAYQYLR 181

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628253|gb|EHJ77643.1| ribosomal protein L13 [Danaus plexippus]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/177 (70%), Positives = 152/177 (85%), Gaps = 2/177 (1%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPARK RRR  RIKKAK IAPRPAAGPLRP+VRCPTVRYH
Sbjct: 7   MIPNGHFHKDWQRFVKTWFNQPARKQRRRHNRIKKAKAIAPRPAAGPLRPVVRCPTVRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTL EIR +GLN  FAR++GI+VD RRR+KS+ESLQ+N+QRLKEY+++LI+F
Sbjct: 67  TKVRAGRGFTLREIRASGLNPAFARTIGISVDPRRRNKSVESLQMNVQRLKEYRARLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P+   KK+ KGEA+ EERK+ATQL+GPLMP++Q  PKS AR+ +E EK F A+Q LR
Sbjct: 127 PK--GKKVLKGEASEEERKLATQLRGPLMPVQQPAPKSSARVITEEEKDFKAYQYLR 181

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608123|dbj|BAM17673.1| ribosomal protein L13 [Papilio xuthus] gi|389610603|dbj|BAM18913.1| ribosomal protein L13 [Papilio polytes]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 125/177 (70%), Positives = 151/177 (85%), Gaps = 2/177 (1%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MIPN HFHKDWQ+++K WFNQPAR+ RR+Q RIKKAK IAPRPAAGPLRP+VRCPTVRYH
Sbjct: 7   MIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAIAPRPAAGPLRPVVRCPTVRYH 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTL EIR AGLN  FAR++GIAVD RRR+KS+ESLQ N+QR+KEY+++LI+F
Sbjct: 67  TKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQTNVQRIKEYRARLILF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR 177
           P+   KK+ KGEA  EERK+ATQL+GPLMP++Q  PKS AR+ +E EK F A+Q LR
Sbjct: 127 PK--GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSHARVITEEEKDFKAYQYLR 181

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
ZFIN|ZDB-GENE-031007-1	211	rpl13 "ribosomal protein L13"	0.994	0.838	0.646	1.3e-61
UNIPROTKB|P41125	211	RPL13 "60S ribosomal protein L	0.994	0.838	0.662	1.6e-61
UNIPROTKB|E2R4F5	211	RPL13 "Uncharacterized protein	0.994	0.838	0.640	5.7e-59
MGI|MGI:105922	211	Rpl13 "ribosomal protein L13"	0.994	0.838	0.640	7.3e-59
UNIPROTKB|P26373	211	RPL13 "60S ribosomal protein L	0.994	0.838	0.629	9.3e-59
UNIPROTKB|F1MK30	293	RPL13 "60S ribosomal protein L	0.994	0.604	0.634	1.5e-58
UNIPROTKB|Q56JZ1	211	RPL13 "60S ribosomal protein L	0.994	0.838	0.634	1.5e-58
RGD|621179	211	Rpl13 "ribosomal protein L13"	0.994	0.838	0.640	1.5e-58
FB|FBgn0011272	218	RpL13 "Ribosomal protein L13"	0.988	0.807	0.629	1.9e-58
UNIPROTKB|I3LSD3	211	RPL13 "60S ribosomal protein L	0.994	0.838	0.623	6.6e-58

ZFIN|ZDB-GENE-031007-1 rpl13 "ribosomal protein L13" [Danio rerio (taxid:7955)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 115/178 (64%), Positives = 147/178 (82%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MI N HFHKDWQK ++ WFNQPARK RRR+AR  KA+ IAPRP +GPLRP+VRCPT+RYH
Sbjct:     8 MILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              +VRAGRGFTLEE++ AG+N + AR++GI+VD+RRR++S ESLQ N+QRLKEY++KLI+F
Sbjct:    68 TKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+  K  +KG++T EE K+ATQL GP+MPI++   K KAR+ SE EK F AF +LRM
Sbjct:   128 PRKAAKP-KKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRM 184

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

UNIPROTKB|P41125 RPL13 "60S ribosomal protein L13" [Gallus gallus (taxid:9031)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 118/178 (66%), Positives = 145/178 (81%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRP AGP+RPIVRCPTVRYH
Sbjct:     8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
             K+VRAGRGF+LEE++ AG+N RFAR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct:    68 KKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+     +KG+++PEE K+ATQL GP+MPIR    + KAR+ SE EK F AF +LRM
Sbjct:   128 PRKPSAP-KKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRM 184

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|E2R4F5 RPL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 114/178 (64%), Positives = 143/178 (80%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct:     8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct:    68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+     +KG+++ EE K+ATQL GP+MPIR    K KAR+ +E EK F AF +LRM
Sbjct:   128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:105922 Rpl13 "ribosomal protein L13" [Mus musculus (taxid:10090)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 114/178 (64%), Positives = 143/178 (80%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct:     8 MILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct:    68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+     +KG+++ EE K+ATQL GP+MPIR    K KAR+ +E EK F AF +LRM
Sbjct:   128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|P26373 RPL13 "60S ribosomal protein L13" [Homo sapiens (taxid:9606)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 112/178 (62%), Positives = 143/178 (80%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             M+   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct:     8 MVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct:    68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+     +KG+++ EE K+ATQL GP+MP+R    K KAR+ +E EK F AF +LRM
Sbjct:   128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRM 184

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1MK30 RPL13 "60S ribosomal protein L13" [Bos taurus (taxid:9913)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 113/178 (63%), Positives = 142/178 (79%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GPLRP+VRCPTVRYH
Sbjct:     8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+K  ESLQ N+QRLKEY+SKLI+F
Sbjct:    68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+     +KG+++ EE K+ATQL GP+MPIR    K KAR+ +E EK F AF +LRM
Sbjct:   128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q56JZ1 RPL13 "60S ribosomal protein L13" [Bos taurus (taxid:9913)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 113/178 (63%), Positives = 142/178 (79%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GPLRP+VRCPTVRYH
Sbjct:     8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+K  ESLQ N+QRLKEY+SKLI+F
Sbjct:    68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+     +KG+++ EE K+ATQL GP+MPIR    K KAR+ +E EK F AF +LRM
Sbjct:   128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRM 184

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|621179 Rpl13 "ribosomal protein L13" [Rattus norvegicus (taxid:10116)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 114/178 (64%), Positives = 142/178 (79%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GP+RPIVRCPTVRYH
Sbjct:     8 MILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+KS ESLQ N+QRLKEY+SKLI+F
Sbjct:    68 TKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+     +KG+++ EE K+ATQL GP+MPIR    K KAR  +E EK F AF +LRM
Sbjct:   128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRM 184

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0015934 "large ribosomal subunit" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;NAS

FB|FBgn0011272 RpL13 "Ribosomal protein L13" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 112/178 (62%), Positives = 145/178 (81%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MIPN H+HK WQ+++K WFNQPARK RR   R+KKAK + PRPA+G LRP+VRCPT+RYH
Sbjct:     7 MIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYH 66

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              ++RAGRGFTLEE++GAG+ A FA+++GIAVD RR++KS+ES Q NIQRLKEY+SKLI+F
Sbjct:    67 TKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILF 126

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKS-KARIPSEAEKKFSAFQTLR 177
             P  EKK +R GE++ EE K+ATQLKGP++PI+  +P   + R  ++ EKKF AF TLR
Sbjct:   127 PINEKK-IRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLR 183

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|I3LSD3 RPL13 "60S ribosomal protein L13" [Sus scrofa (taxid:9823)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 111/178 (62%), Positives = 142/178 (79%)

Query:     1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
             MI   HFHKDWQ+ +  WFNQPARK RRR+AR  KA+ IAPRPA+GPLRP+VRCPTVRYH
Sbjct:     8 MILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYH 67

Query:    61 KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
              +VRAGRGF+LEE+R AG++ + AR++GI+VD RRR+K  ESLQ N+QRLKEY+SKLI+F
Sbjct:    68 TKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILF 127

Query:   121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
             PR+     +KG+++ EE K+ATQL GP+MPIR    + KAR+ ++ EK F AF +LRM
Sbjct:   128 PRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKREKARVITDEEKNFKAFASLRM 184

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95043	RL13_SCHMA	No assigned EC number	0.5593	0.9887	0.9565	N/A	N/A
O74175	RL13_SCHPO	No assigned EC number	0.5314	0.9606	0.8221	yes	N/A
Q9FF90	RL133_ARATH	No assigned EC number	0.5112	0.9943	0.8592	no	N/A
Q9Z313	RL13_CRIGR	No assigned EC number	0.6348	0.9943	0.8388	yes	N/A
P91128	RL13_CAEEL	No assigned EC number	0.5141	0.9887	0.8502	yes	N/A
P26373	RL13_HUMAN	No assigned EC number	0.6292	0.9943	0.8388	yes	N/A
Q90Z10	RL13_DANRE	No assigned EC number	0.6460	0.9943	0.8388	yes	N/A
Q90YV5	RL13_ICTPU	No assigned EC number	0.6573	0.9943	0.8388	N/A	N/A
P47963	RL13_MOUSE	No assigned EC number	0.6404	0.9943	0.8388	yes	N/A
O46157	RL13_LUMRU	No assigned EC number	0.5974	0.8876	0.8404	N/A	N/A
Q12690	RL13A_YEAST	No assigned EC number	0.4682	0.8988	0.8040	yes	N/A
Q56JZ1	RL13_BOVIN	No assigned EC number	0.6348	0.9943	0.8388	yes	N/A
P41126	RL13_DROME	No assigned EC number	0.6292	0.9887	0.8073	yes	N/A
P41127	RL131_ARATH	No assigned EC number	0.5224	0.9943	0.8592	yes	N/A
P41125	RL13_CHICK	No assigned EC number	0.6629	0.9943	0.8388	yes	N/A
P41123	RL13_RAT	No assigned EC number	0.6404	0.9943	0.8388	yes	N/A
Q962U1	RL13_SPOFR	No assigned EC number	0.7005	0.9831	0.7990	N/A	N/A
P40212	RL13B_YEAST	No assigned EC number	0.4682	0.8988	0.8040	yes	N/A
P41128	RL131_BRANA	No assigned EC number	0.5168	0.9943	0.8592	N/A	N/A
P41129	RL132_BRANA	No assigned EC number	0.5083	0.9887	0.8543	N/A	N/A
Q54E20	RL13_DICDI	No assigned EC number	0.5191	0.9606	0.8181	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	178
pfam01294	179	pfam01294, Ribosomal_L13e, Ribosomal protein L13e	1e-78
PTZ00352	212	PTZ00352, PTZ00352, 60S ribosomal protein L13; Pro	7e-58
PTZ00192	218	PTZ00192, PTZ00192, 60S ribosomal protein L13; Pro	9e-40
COG4352	113	COG4352, RPL13, Ribosomal protein L13E [Translatio	2e-32
PRK12277	83	PRK12277, PRK12277, 50S ribosomal protein L13e; Pr	1e-06

>gnl|CDD|110307 pfam01294, Ribosomal_L13e, Ribosomal protein L13e

 Score =  231 bits (590), Expect = 1e-78
 Identities = 114/178 (64%), Positives = 142/178 (79%), Gaps = 1/178 (0%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           MI N HF K WQ+ +K WFNQPARK RRR AR  KA +IAPRPAAGPLRP+VRCPTV+Y+
Sbjct: 2   MILNNHFRKHWQRRVKTWFNQPARKVRRRNARQAKAVKIAPRPAAGPLRPVVRCPTVKYN 61

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VRAGRGFTLEE++ AG+N +FAR++GIAVD RRR++S+E LQ N+QRLKEY+SKLI+F
Sbjct: 62  MKVRAGRGFTLEELKAAGINKKFARTIGIAVDHRRRNRSLEGLQANVQRLKEYQSKLILF 121

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR   KK R G+++ EE K ATQLKGP+MPI Q   + +AR  ++ EK F AF TLR+
Sbjct: 122 PRNP-KKPRAGDSSAEEVKSATQLKGPVMPIAQEAKRVEARKVTKEEKSFKAFATLRL 178

Length = 179

>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional

 Score =  179 bits (457), Expect = 7e-58
 Identities = 91/186 (48%), Positives = 125/186 (67%), Gaps = 11/186 (5%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
           ++PN H HK WQ+++K W+NQP RK RRR AR KKA    PRP    LRP+V  PT RY+
Sbjct: 6   VLPNVHLHKHWQRFVKTWYNQPGRKKRRRLARQKKAAAAGPRPV-ELLRPVVHGPTQRYN 64

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
            +VR GRGFTLEE++ AGLNA+ ARS+GIAVD RRR++S ESL LN++RLK Y SKL++F
Sbjct: 65  MKVRLGRGFTLEELKAAGLNAQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLF 124

Query: 121 PRREKKKLRKGEA---------TPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFS 171
           PR+  KK +KG A               V       ++P +++  + KAR+ ++ E+ F+
Sbjct: 125 PRK-GKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFN 183

Query: 172 AFQTLR 177
           A++TLR
Sbjct: 184 AYRTLR 189

Length = 212

>gnl|CDD|173472 PTZ00192, PTZ00192, 60S ribosomal protein L13; Provisional

 Score =  133 bits (337), Expect = 9e-40
 Identities = 78/148 (52%), Positives = 102/148 (68%), Gaps = 8/148 (5%)

Query: 2   IPNAHFHKDWQKY------IKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCP 55
           IP+ H  K W         +K + NQPA+K RRR+ R+ KAK+I PRP    LRP V CP
Sbjct: 8   IPHVHQRKHWNPCSSQKGNVKVFLNQPAQKHRRRRLRLLKAKKIFPRPLKA-LRPQVNCP 66

Query: 56  TVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKS 115
           TVR++ + R GRGF+L E++ AGLN RFAR++GI VD RR++KS E + +N+QRLK Y S
Sbjct: 67  TVRHNMKQRLGRGFSLAELKAAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQRLKTYMS 126

Query: 116 KLIVFPRREKKKLRKGEATPEERKVATQ 143
           KL++FP    KK++KGEA  EE K ATQ
Sbjct: 127 KLVLFP-MNHKKVQKGEAKEEEVKAATQ 153

Length = 218

>gnl|CDD|226798 COG4352, RPL13, Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)

Query: 8   HKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGR 67
            K WQ  +K  F+Q  +K  RR AR+ KA +IAPRP A  ++P VR PT +Y+++VRAGR
Sbjct: 1   RKHWQLRVKVHFDQAGKKVSRRNARLTKAAKIAPRPKA-LVKPPVRAPTGKYNRKVRAGR 59

Query: 68  GFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121
           GF+L E++ AGL+AR AR++GIAVD RRR+++ E+ +  ++R+KE   K+IVFP
Sbjct: 60  GFSLGELKAAGLSARKARTLGIAVDHRRRNRNPENFEALVKRIKELLEKIIVFP 113

Length = 113

>gnl|CDD|183397 PRK12277, PRK12277, 50S ribosomal protein L13e; Provisional

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 9/76 (11%)

Query: 47  PLRPIVRCPTVRYH-----KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSME 101
           P + IV+ P  R+      K  R GRGF++ E+  AGL+ + AR +GI VD RR++   E
Sbjct: 7   PPKAIVKRPNYRFEYGGKRKDKRIGRGFSIGELEAAGLDIKNARKLGIRVDKRRKTVHEE 66

Query: 102 SLQLNIQRLKEYKSKL 117
               N++ LK++  +L
Sbjct: 67  ----NVEALKKFLEQL 78

Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PF01294	179	Ribosomal_L13e: Ribosomal protein L13e; InterPro:	100.0
PTZ00352	212	60S ribosomal protein L13; Provisional	100.0
KOG3295|consensus	205		100.0
PTZ00192	218	60S ribosomal protein L13; Provisional	100.0
COG4352	113	RPL13 Ribosomal protein L13E [Translation, ribosom	100.0
PRK12277	83	50S ribosomal protein L13e; Provisional	100.0

>PF01294 Ribosomal_L13e: Ribosomal protein L13e; InterPro: IPR001380 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.5e-89  Score=564.12  Aligned_cols=177  Identities=68%  Similarity=1.120  Sum_probs=122.0

Q ss_pred             CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841           1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN   80 (178)
Q Consensus         1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~   80 (178)
                      ||||+|||||||++|+||||||++|++||++|++||++++|+|++|+|||||||||+|||+++|+||||||+||++|||+
T Consensus         2 ~ipn~Hf~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~prP~~g~LrPiVrcpt~rYn~k~r~GRGFsl~ELk~aGi~   81 (179)
T PF01294_consen    2 VIPNNHFRKDWQRRVKTWFNQPARKKRRRQARQAKAAKIAPRPVSGPLRPIVRCPTVRYNTKVRLGRGFSLEELKAAGIS   81 (179)
T ss_dssp             ------SSS-GGGS----THHHHHHHHHHHHHHHHHHHHTTS-SS--B--EEE-SSTTTTTSEEE-SSB-HHHHHHHT--
T ss_pred             CcccccchhhhhhhhhhhcCcHHHHHHHHHHHHHHHHhcCCCCcchhhHhhhhccceecccccccCCCcCHHHHHHcCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCCCCCHHHHhhhhhhcCCCccCCCCCCCCcc
Q psy2841          81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA  160 (178)
Q Consensus        81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkgdss~ee~~~a~q~~~~vmPi~~~~~~~~~  160 (178)
                      .++|+||||+||+||+|+|+|||++|||||++|+|||||||+++++| |+||+++||+++|+|+.|.+|||.+..+.+++
T Consensus        82 ~~~A~tiGI~VD~RR~n~s~Esl~~Nv~RLkeY~sklilfPrk~~~~-kkGdss~ee~k~a~q~~~~v~Pi~~~~~~~~~  160 (179)
T PF01294_consen   82 KKYARTIGISVDHRRKNKSEESLQANVQRLKEYKSKLILFPRKAKKP-KKGDSSAEELKLATQLKGPVMPIRKVKKKEKA  160 (179)
T ss_dssp             HHHHHHHTB-B-TT----SHHHHHHHHHHHHHHHHT-----SSS----TTT--TTHHHH-----HHHHS-----------
T ss_pred             hHHccccCeeeccccCCccHHHHHHHHHHHHhhhhhceeecCccccc-cccCCCHHHHHHHHhhcCceeeecCCcCcccc
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             ccCCcccccchhhHhhhC
Q psy2841         161 RIPSEAEKKFSAFQTLRM  178 (178)
Q Consensus       161 r~it~eek~~~ay~~LR~  178 (178)
                      ++||+||++|+||.+||+
T Consensus       161 r~it~eek~~~af~~LR~  178 (179)
T PF01294_consen  161 RAITEEEKKFSAFRTLRM  178 (179)
T ss_dssp             HHHHHHHTTS-HHHHHHH
T ss_pred             ccCCHHHhhhhHHHHHhc
Confidence            999999999999999995

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal protein L13e is widely found in vertebrates [], Drosophila melanogaster, plants, yeast, amongst others.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_U 4A1B_U 4A1D_U 4A19_U.

>PTZ00352 60S ribosomal protein L13; Provisional

Probab=100.00  E-value=1.2e-85  Score=552.91  Aligned_cols=176  Identities=52%  Similarity=0.906  Sum_probs=172.7

Q ss_pred             CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841           1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN   80 (178)
Q Consensus         1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~   80 (178)
                      ||||+|||||||++|+|||||||+|++||++|++||+++||||+ ++|||||||||++||+++|+||||||+||++|||+
T Consensus         6 ~lpn~HF~K~Wq~~VktwFnQp~rK~rRR~aR~~KA~~i~prP~-~~LrPiVrcpT~ryn~k~R~GRGFtl~ELkaaGi~   84 (212)
T PTZ00352          6 VLPNVHLHKHWQRFVKTWYNQPGRKKRRRLARQKKAAAAGPRPV-ELLRPVVHGPTQRYNMKVRLGRGFTLEELKAAGLN   84 (212)
T ss_pred             CCCchhhhHHHHhhcccccCchHHHHHHHHHHHHHHHHhCCCCc-ccCCcceecccccccceeeccCCCCHHHHHHcCCC
Confidence            79999999999999999999999999999999999999999996 79999999999999999999999999999999999


Q ss_pred             hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCC------CCCHHHHhh--hh-hhcCCCccC
Q psy2841          81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKG------EATPEERKV--AT-QLKGPLMPI  151 (178)
Q Consensus        81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkg------dss~ee~~~--a~-q~~~~vmPi  151 (178)
                      .++|+||||+||+||+|+|+|||+.|||||++|+|+|||||++.++| |||      |+|+||++.  |+ |+.|.+|||
T Consensus        85 ~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~y~skLvlFPrk~~k~-kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi  163 (212)
T PTZ00352         85 AQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKP-KKGFAGIPADTSKEEVVALPVKQNKNSEVIPF  163 (212)
T ss_pred             HHHhcccceeeccccccCcHHHHHHHHHHHHHHHHheeeecCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHhhcCceecc
Confidence            99999999999999999999999999999999999999999999999 999      999999998  77 899999999


Q ss_pred             CCCCCCCccccCCcccccchhhHhhhC
Q psy2841         152 RQSKPKSKARIPSEAEKKFSAFQTLRM  178 (178)
Q Consensus       152 ~~~~~~~~~r~it~eek~~~ay~~LR~  178 (178)
                      .+..+.++++.||+||++|+||.+||+
T Consensus       164 ~~~~~~~~~r~it~eek~~~Ay~tLR~  190 (212)
T PTZ00352        164 QRTPKREKARVITKEERAFNAYRTLRQ  190 (212)
T ss_pred             cccccccccccCCHHHHHhhHHHHHHH
Confidence            999999999999999999999999985

>KOG3295|consensus

Probab=100.00  E-value=4.3e-85  Score=544.11  Aligned_cols=176  Identities=63%  Similarity=1.054  Sum_probs=174.2

Q ss_pred             CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841           1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN   80 (178)
Q Consensus         1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~   80 (178)
                      ||||+|||||||++|+||||||++|.+|+++|++||.+|||||++ +|||||||||++||+|+|+||||||+||++|||+
T Consensus         6 ~ipn~Hf~K~wq~~vktwfnqp~rk~rrr~~r~~kA~~i~PrP~~-~lRPvVrcptirYn~k~RaGRGFtleElk~AGi~   84 (205)
T KOG3295|consen    6 MIPNNHFRKHWQKRVKTWFNQPARKTRRRQARQKKAVKIAPRPLS-LLRPVVRCPTIRYNRKVRAGRGFTLEELKAAGIS   84 (205)
T ss_pred             cCCchhhHHHHHHHHHHHcCchHHHHHHHHHHHhhhhccCCCchh-hcCCcccccchhhhhhhhccCCccHHHHHHcCcc
Confidence            799999999999999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCCCCCHHHHhhhhhhcCCCccCCCCCCCCcc
Q psy2841          81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA  160 (178)
Q Consensus        81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkgdss~ee~~~a~q~~~~vmPi~~~~~~~~~  160 (178)
                      .++|+||||+||+||+|+|.|+||.||||||+|+|||||||+++++| ++||||+||+++|+|+.|++|||.+....+++
T Consensus        85 k~~A~tiGIaVD~RRrn~s~E~lqaNvqRlKey~sklilfprk~~ap-kkGdSsaeel~~atq~~g~~mPi~~~~~~eEa  163 (205)
T KOG3295|consen   85 KKVARTIGIAVDHRRRNRSQEGLQANVQRLKEYKSKLILFPRKASAP-KKGDSSAEELKLATQLTGPVMPIVNVYAKEEA  163 (205)
T ss_pred             HhhccceeeeecccccCccHHHHHHhHHHHHHhhcceEEeecCcCCC-cCCCCcHHHHHhhhhhcCCCcCccccchhHHH
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             ccCCcccccchhhHhhhC
Q psy2841         161 RIPSEAEKKFSAFQTLRM  178 (178)
Q Consensus       161 r~it~eek~~~ay~~LR~  178 (178)
                      +.+|+||++|+||++||+
T Consensus       164 ~~~t~e~k~f~Af~~lr~  181 (205)
T KOG3295|consen  164 RVVTDEEKNFKAFRTLRL  181 (205)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999984

>PTZ00192 60S ribosomal protein L13; Provisional

Probab=100.00  E-value=3.3e-84  Score=545.73  Aligned_cols=171  Identities=49%  Similarity=0.818  Sum_probs=166.9

Q ss_pred             CCCCCcccccccch------hhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHH
Q psy2841           1 MIPNAHFHKDWQKY------IKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEI   74 (178)
Q Consensus         1 ~ipn~Hf~K~wq~r------VktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~El   74 (178)
                      ||||+|||||||++      |+|||||||+|.+||++|++||++|||||+ ++|||||||||++||+++|+||||||+||
T Consensus         7 ~ipn~HF~K~Wq~~~~~~~~VktwFnQP~rK~rRR~~R~~KA~~iaPRP~-~~LRPiVrcPT~rYN~kvR~GRGFtl~EL   85 (218)
T PTZ00192          7 AIPHVHQRKHWNPCSSQKGNVKVFLNQPAQKHRRRRLRLLKAKKIFPRPL-KALRPQVNCPTVRHNMKQRLGRGFSLAEL   85 (218)
T ss_pred             CCCchHHHhHHhhhcccCCceeeecCchHHHHHHHHHHHHHHHHhCCCCC-ccCCccccCCcccccceeeccCCcCHHHH
Confidence            69999999999999      999999999999999999999999999996 79999999999999999999999999999


Q ss_pred             HHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCCCCCHHHHhhhhh---------hc
Q psy2841          75 RGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQ---------LK  145 (178)
Q Consensus        75 kaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkgdss~ee~~~a~q---------~~  145 (178)
                      ++|||+.++|+||||+||+||+|+|+|||+.|||||++|+|+|||||++.++| +|||+++||++.|+|         +.
T Consensus        86 k~aGi~~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~Y~skLilFPrk~~k~-kkgds~~ee~k~a~Q~~~~~~~~~~~  164 (218)
T PTZ00192         86 KAAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQRLKTYMSKLVLFPMNHKKV-QKGEAKEEEVKAATQDRSRFGDAAVG  164 (218)
T ss_pred             HHcCCCHHHhcccceeeccccccccHHHHHHHHHHHHHHHHheeeeccccCCC-CCCCCCHHHHHHHHhhhccccccccc
Confidence            99999999999999999999999999999999999999999999999999999 999999999999999         66


Q ss_pred             CCCccCCCCCCCCccccCCcccccchhhHhhhC
Q psy2841         146 GPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM  178 (178)
Q Consensus       146 ~~vmPi~~~~~~~~~r~it~eek~~~ay~~LR~  178 (178)
                      |.+|||     .++++.||+||++|+||.+||+
T Consensus       165 g~v~Pi-----~~~~~~it~eek~~~Ay~~LR~  192 (218)
T PTZ00192        165 GVVTPS-----REAPRVVSKEERSKNVYAFLKK  192 (218)
T ss_pred             Cccccc-----ccccccCCHHHHHhhHHHHHHH
Confidence            899999     4789999999999999999985

>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-45  Score=280.99  Aligned_cols=113  Identities=51%  Similarity=0.882  Sum_probs=111.3

Q ss_pred             cccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCChhhhhhc
Q psy2841           8 HKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLNARFARSV   87 (178)
Q Consensus         8 ~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~~~~A~ti   87 (178)
                      +|+||.+|++||||++++.+|+++++.+|++++|+|.+ .++|+|+|||..||+++|+|||||++||++||++.+.|++|
T Consensus         1 ~k~~~l~vk~h~d~~~k~~~~~~~~~~~a~~~a~~Pk~-~vk~p~~~~~~~~nrk~R~GRGFslgEl~aAGL~~~~AR~L   79 (113)
T COG4352           1 RKHWQLRVKVHFDQAGKKVSRRNARLTKAAKIAPRPKA-LVKPPVRAPTGKYNRKVRAGRGFSLGELKAAGLSARKARTL   79 (113)
T ss_pred             CchHHHHHHHHhChhhhHHHHHhhhhhhccccCCCcHH-HccCCccCCccCcccceeccCCccHHHHHHcCcCHHHHHhh
Confidence            58999999999999999999999999999999999995 89999999999999999999999999999999999999999


Q ss_pred             ceeeccccCCCChHHHHHHHHHHHHHhhcceeec
Q psy2841          88 GIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP  121 (178)
Q Consensus        88 GI~VD~RRknks~Esl~~NV~RLk~y~sklilfP  121 (178)
                      ||+||+||+|.++|++++||+||++|++++++||
T Consensus        80 GI~VD~RRr~~~~en~eal~k~ik~ll~~~~~~p  113 (113)
T COG4352          80 GIAVDHRRRNRNPENFEALVKRIKELLEKIIVFP  113 (113)
T ss_pred             CcceehhhccCCHHHHHHHHHHHHHHHhcCccCC
Confidence            9999999999999999999999999999999998

>PRK12277 50S ribosomal protein L13e; Provisional

Probab=100.00  E-value=1.9e-38  Score=234.70  Aligned_cols=73  Identities=37%  Similarity=0.644  Sum_probs=69.9

Q ss_pred             CCCCCCCCCceeeCCcccccc-----ccccCCCCCHHHHHHcCCChhhhhhcceeeccccCCCChHHHHHHHHHHHHHhh
Q psy2841          41 PRPAAGPLRPIVRCPTVRYHK-----RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKS  115 (178)
Q Consensus        41 PrP~~~~lrPiVrcpt~ryn~-----k~R~GRGFsl~ElkaaGi~~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~s  115 (178)
                      +.|+ ++|||||+|||++||+     ++|+||||||+||++|||++++|+||||+||+||+|+|+|    ||||||+|+|
T Consensus         2 ~~~~-~~lrPiVr~Pt~ryn~gg~~~k~R~GRGFsl~ELkaaGi~~~~ArtiGI~VD~RRrn~~~e----NVerLk~y~s   76 (83)
T PRK12277          2 REEM-EPPKAIVKRPNYRFEYGGKRKDKRIGRGFSIGELEAAGLDIKNARKLGIRVDKRRKTVHEE----NVEALKKFLE   76 (83)
T ss_pred             CCCc-CCCCCceeCCceecccCCCCCceeecCCcCHHHHHHcCCCHHHhcccCeeecccccCCCHH----HHHHHHHHHH
Confidence            5788 5899999999999999     9999999999999999999999999999999999999977    9999999999


Q ss_pred             cce
Q psy2841         116 KLI  118 (178)
Q Consensus       116 kli  118 (178)
                      +|-
T Consensus        77 kL~   79 (83)
T PRK12277         77 QLG   79 (83)
T ss_pred             Hhc
Confidence            985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
3u5e_L	199	The Structure Of The Eukaryotic Ribosome At 3.0 A R		5e-33
3zf7_N	218	High-resolution Cryo-electron Microscopy Structure		5e-30
4a18_U	206	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-25

>pdb|3U5E|L Chain L, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 199

Iteration: 1
 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/173 (46%), Positives = 111/173 (64%), Gaps = 13/173 (7%)
Query: 6   HFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRA 65
           HF K WQ+ +K  F+Q  +K  RR AR  +A +IAPRP    LRP+VR PTV+Y+++VRA
Sbjct: 13  HFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRA 71
Query: 66  GRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREK 125
           GRGFTL E++ AGL A +AR++GIAVD RR++++ E    N+QRLKEY+SK+IVFPR  K
Sbjct: 72  GRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK 131
Query: 126 KKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
                    PE  +V +       PI Q     +AR   +  +  SAF+TLR+
Sbjct: 132 --------APEAEQVLS--AAATFPIAQPATDVEARAVQDNGE--SAFRTLRL 172

>pdb|3ZF7|N Chain N, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 218

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 105/148 (70%), Gaps = 8/148 (5%)
Query: 2   IPNAHFHKDW------QKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCP 55
           IP+ H  K W      +  +K +FNQPA+K RRR+ R+ KAK+I PRP    LRP V CP
Sbjct: 8   IPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-LRPQVNCP 66
Query: 56  TVRYHKRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKS 115
           TVRY+ + R GRGF+LEE++ AG+  R+AR++GI VD RR++KS E + +N+QRLK Y S
Sbjct: 67  TVRYNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQRLKTYMS 126
Query: 116 KLIVFPRREKKKLRKGEATPEERKVATQ 143
           KL++FP   +KK +KG+AT EE K ATQ
Sbjct: 127 KLVLFP-LNRKKPQKGDATEEEVKAATQ 153

>pdb|4A18|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 206

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Query: 2   IPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHK 61
           +P A   K  Q  IK +FNQ A+K  R  AR  +A  + PRP    L+P+VR  T RY+K
Sbjct: 7   LPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE-KLQPVVRKQTQRYNK 65
Query: 62  RVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFP 121
             + GRGFTL+E++ AG++A FA+S+GI VD RR+++  ESL+LN +RL  Y SKL++FP
Sbjct: 66  STKLGRGFTLQELKAAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFP 125
Query: 122 RREKK 126
           R + K
Sbjct: 126 RHQGK 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
4a18_U	206	RPL13, 60S ribosomal protein L36; ribosome, eukary	4e-57
3u5e_L	199	60S ribosomal protein L13-A, 60S ribosomal protein	1e-49

>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U Length = 206

 Score =  177 bits (449), Expect = 4e-57
 Identities = 68/179 (37%), Positives = 100/179 (55%), Gaps = 2/179 (1%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
            +P A   K  Q  IK +FNQ A+K  R  AR  +A  + PRP    L+P+VR  T RY+
Sbjct: 6   QLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPT-EKLQPVVRKQTQRYN 64

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
           K  + GRGFTL+E++ AG++A FA+S+GI VD RR+++  ESL+LN +RL  Y SKL++F
Sbjct: 65  KSTKLGRGFTLQELKAAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLF 124

Query: 121 PRREKK-KLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR + K K      T +    A       +P+     + KA       +K   ++ +R 
Sbjct: 125 PRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSVSKREKAVSNIAELRKKKVYRIIRQ 183

>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L Length = 199

 Score =  158 bits (400), Expect = 1e-49
 Identities = 79/178 (44%), Positives = 106/178 (59%), Gaps = 13/178 (7%)

Query: 1   MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYH 60
            I   HF K WQ+ +K  F+Q  +K  RR AR  +A +IAPRP    LRP+VR PTV+Y+
Sbjct: 8   PILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYN 66

Query: 61  KRVRAGRGFTLEEIRGAGLNARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVF 120
           ++VRAGRGFTL E++ AGL A +AR++GIAVD RR++++ E    N+QRLKEY+SK+IVF
Sbjct: 67  RKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVF 126

Query: 121 PRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRM 178
           PR  K                        PI Q     +AR     +   SAF+TLR+
Sbjct: 127 PRNGKAP----------EAEQVLSAAATFPIAQPATDVEARAVQ--DNGESAFRTLRL 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
4a18_U	206	RPL13, 60S ribosomal protein L36; ribosome, eukary	100.0
3u5e_L	199	60S ribosomal protein L13-A, 60S ribosomal protein	100.0

>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U

Probab=100.00  E-value=2.5e-89  Score=572.44  Aligned_cols=176  Identities=39%  Similarity=0.618  Sum_probs=174.1

Q ss_pred             CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841           1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN   80 (178)
Q Consensus         1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~   80 (178)
                      ||||+|||||||++|+||||||++|.+||++|++||+++||||++ +|||||||||+|||+++|+||||||+||++|||+
T Consensus         6 ~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~aR~~KA~~iaPrP~~-~LRPiVrcPT~rYn~kvR~GRGFsl~Elk~aGi~   84 (206)
T 4a18_U            6 QLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE-KLQPVVRKQTQRYNKSTKLGRGFTLQELKAAGIS   84 (206)
T ss_dssp             CCCCCCSSSCGGGSCCCCTHHHHHHHHHHHHHHHHHHHHTTSCSS-CBCCEEECSSTTTTTSEEECSSBCHHHHHHHTCC
T ss_pred             cCCCccccchHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCCCcc-cccCceeCCcccccccccCCCCcCHHHHHHcCCC
Confidence            799999999999999999999999999999999999999999997 9999999999999999999999999999999999


Q ss_pred             hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCC--CCCHHHHhhhhhhcCCCccCCCCCCCC
Q psy2841          81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKG--EATPEERKVATQLKGPLMPIRQSKPKS  158 (178)
Q Consensus        81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkg--dss~ee~~~a~q~~~~vmPi~~~~~~~  158 (178)
                      .++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++| |||  |||+||+++|+|+.|.+|||.+..+.+
T Consensus        85 ~~~A~tiGI~VD~RR~nkS~Esl~~Nv~rLk~y~sklIlFPrk~~k~-kkG~~Dss~ee~k~a~q~~g~vmPi~~~~~~~  163 (206)
T 4a18_U           85 AAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFPRHQGKA-KKGLVNDTADTSSAAQNALQTSVPLPSVSKRE  163 (206)
T ss_dssp             HHHHHHHTBCBCTTCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC-TTTTCCCTTHHHHCCCCCHHHHSCCCCCCCCC
T ss_pred             HHHhcccCeeeccccccccHhHHHHHHHHHHHHHHheEEeeCccccc-ccCCCCCCHHHHHHHHHhcccccCccCccccc
Confidence            99999999999999999999999999999999999999999999999 999  999999999999999999999999999


Q ss_pred             ccccCCcccccchhhHhhhC
Q psy2841         159 KARIPSEAEKKFSAFQTLRM  178 (178)
Q Consensus       159 ~~r~it~eek~~~ay~~LR~  178 (178)
                      ++++||+||++|+||.+||+
T Consensus       164 ~~r~it~eek~~~ay~~LR~  183 (206)
T 4a18_U          164 KAVSNIAELRKKKVYRIIRQ  183 (206)
T ss_dssp             CCHHHHHHHTTSCHHHHHHH
T ss_pred             ccccCChhhhcccHHHHHHH
Confidence            99999999999999999985

>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L

Probab=100.00  E-value=5.3e-83  Score=531.88  Aligned_cols=165  Identities=48%  Similarity=0.795  Sum_probs=162.2

Q ss_pred             CCCCCcccccccchhhhhcCchhhhHHHHHHHHHHHHhhCCCCCCCCCCceeeCCccccccccccCCCCCHHHHHHcCCC
Q psy2841           1 MIPNAHFHKDWQKYIKCWFNQPARKFRRRQARIKKAKEIAPRPAAGPLRPIVRCPTVRYHKRVRAGRGFTLEEIRGAGLN   80 (178)
Q Consensus         1 ~ipn~Hf~K~wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~~~lrPiVrcpt~ryn~k~R~GRGFsl~ElkaaGi~   80 (178)
                      ||||+|||||||++|+||||||++|.+||++|++||+++||||++ +|||||||||++||+++|+||||||+||++|||+
T Consensus         8 ~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~aR~~KA~~iaPrP~~-~LRPiVrcpT~rYn~kvR~GRGFsl~ELk~aGi~   86 (199)
T 3u5e_L            8 PILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLD-LLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLT   86 (199)
T ss_dssp             CCCCCCCCSSGGGGEEECTTHHHHHHHHHHHHHHHHHHTTTSCSS-CBCCEEECCHHHHTTSEEECSCCCHHHHHHTTCC
T ss_pred             cCCCccccchHHHHHhhhcCChhHHHHHHHHHHHHHHHhCCCCcc-cccCceecCcccccccccCCCCcCHHHHHHcCCC
Confidence            799999999999999999999999999999999999999999997 9999999999999999999999999999999999


Q ss_pred             hhhhhhcceeeccccCCCChHHHHHHHHHHHHHhhcceeecccchhhccCCCCCHHHHhhhhhhcCCCccCCCCCCCCcc
Q psy2841          81 ARFARSVGIAVDARRRSKSMESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA  160 (178)
Q Consensus        81 ~~~A~tiGI~VD~RRknks~Esl~~NV~RLk~y~sklilfPrk~~k~~kkgdss~ee~~~a~q~~~~vmPi~~~~~~~~~  160 (178)
                      .++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++| +||         |+|+.|.+|||.+..+.+++
T Consensus        87 ~k~A~tiGI~VD~RR~nks~Esl~~NVqrLk~y~sklilFPrk~~~~-kkG---------atq~~g~vmPi~~~~~~~~~  156 (199)
T 3u5e_L           87 AAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGKAP-EAE---------QVLSAAATFPIAQPATDVEA  156 (199)
T ss_dssp             HHHHHHTTBCCCTTCCCCBHHHHHHHHHHHHHHHHTEEECCSSSCCC-CCC---------CCCCSTTTSCCCCCCCSCSE
T ss_pred             HHHhcccCeeeccccccccHHHHHHHHHHHHHHHhheeEeccccccc-ccc---------cccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999 999         79999999999999999999


Q ss_pred             ccCCcccccchhhHhhhC
Q psy2841         161 RIPSEAEKKFSAFQTLRM  178 (178)
Q Consensus       161 r~it~eek~~~ay~~LR~  178 (178)
                      ++||+|  +|+||.+||+
T Consensus       157 r~it~e--~~~ay~~LR~  172 (199)
T 3u5e_L          157 RAVQDN--GESAFRTLRL  172 (199)
T ss_dssp             ECCCCC--CCCSHHHHHH
T ss_pred             cccChh--hhhHHHHHHH
Confidence            999999  9999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00