Psyllid ID: psy2842
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | 2.2.26 [Sep-21-2011] | |||||||
| Q7ZYC4 | 739 | Long-chain-fatty-acid--Co | N/A | N/A | 0.454 | 0.299 | 0.517 | 7e-62 | |
| Q9V3S9 | 666 | Very long-chain-fatty-aci | yes | N/A | 0.5 | 0.364 | 0.451 | 1e-56 | |
| Q99PU5 | 721 | Long-chain-fatty-acid--Co | yes | N/A | 0.452 | 0.305 | 0.497 | 2e-54 | |
| Q924N5 | 721 | Long-chain-fatty-acid--Co | yes | N/A | 0.452 | 0.305 | 0.497 | 2e-54 | |
| Q5FVE4 | 666 | Long-chain-fatty-acid--Co | yes | N/A | 0.440 | 0.321 | 0.488 | 9e-54 | |
| Q5ZKR7 | 763 | Long-chain-fatty-acid--Co | yes | N/A | 0.454 | 0.289 | 0.471 | 2e-53 | |
| Q2KHW5 | 726 | Long-chain-fatty-acid--Co | yes | N/A | 0.452 | 0.303 | 0.488 | 4e-53 | |
| Q4R4P9 | 724 | Long-chain-fatty-acid--Co | N/A | N/A | 0.452 | 0.303 | 0.497 | 5e-53 | |
| Q96GR2 | 724 | Long-chain-fatty-acid--Co | no | N/A | 0.452 | 0.303 | 0.484 | 8e-52 | |
| A1L1K7 | 667 | Long-chain-fatty-acid--Co | no | N/A | 0.452 | 0.329 | 0.420 | 5e-47 |
| >sp|Q7ZYC4|ACBG2_XENLA Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Xenopus laevis GN=acsbg2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 238 bits (607), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 154/226 (68%), Gaps = 5/226 (2%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
++ K+Y R AK F+KLGLERYH V I+GFN+ EWF +D+GAI+AGGFA G+YTTN
Sbjct: 137 KMSYKQYYEQCRIAAKGFIKLGLERYHGVGILGFNSAEWFIADVGAIFAGGFAVGIYTTN 196
Query: 261 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY--EGKPDKPGVISWDE 318
S EAC + +ANI VVE+ KQL+KIL+V+ Q P LKAI+QY E K +P + +W E
Sbjct: 197 SAEACHYVAQNCEANIIVVENQKQLQKILQVQDQLPHLKAIIQYKDELKEKRPNLYTWKE 256
Query: 319 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK 378
M+LG+ PD LD+++ + N+CCTL+YTSGT G K VMLSHDNIT+ AA + +
Sbjct: 257 FMQLGKDIPDSQLDQIISSQKPNQCCTLIYTSGTTGQPKGVMLSHDNITWTAAAAGKTVR 316
Query: 379 LESAA---LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
L A V+S+LPLSHIAAQ +DI+ M +FA +ALK
Sbjct: 317 LREATDLQEIVVSYLPLSHIAAQMIDIWLTMKYGGATYFAQPDALK 362
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Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Xenopus laevis (taxid: 8355) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9V3S9|BGM_DROME Very long-chain-fatty-acid--CoA ligase bubblegum OS=Drosophila melanogaster GN=bgm PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 164/266 (61%), Gaps = 23/266 (8%)
Query: 178 DGVGR----TIPGTQTKIVDP-----------DEEGNGEICLKEYEANVRTVAKAFLKLG 222
DG+G ++PG + V+ + G + K+YE V VAKAF+KLG
Sbjct: 38 DGIGAEEPISVPGLLKRTVNNYGDYPALRTKNGKNGYHTVTYKQYEQKVHQVAKAFIKLG 97
Query: 223 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282
LE +HSV ++ FN EWFYS +GAI+A G AG+YTTNS +A H L +S A I VV+D
Sbjct: 98 LEEHHSVGVLAFNCAEWFYSAMGAIHARGIIAGIYTTNSADAVQHVLESSHAQIVVVDDA 157
Query: 283 KQLEKILKVKAQCPKLKAIVQYEGKPDKP------GVISWDELMELGRAAPDESLDRVLE 336
KQ++KI ++ + PKLKA +Q + +P P G W E+ + + ++ LE
Sbjct: 158 KQMDKIHAIRDKLPKLKAAIQIQ-EPYSPYLKKEDGYYRWSEIESMNVSDVEDQYMTRLE 216
Query: 337 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAALSVISFLPLSHI 395
+A NECC LVYTSGT G K VMLSHDNITF+ I++ ++ A S++S+LPLSH+
Sbjct: 217 NVAINECCCLVYTSGTVGMPKGVMLSHDNITFDVRGIVKAMDRVVVGAESIVSYLPLSHV 276
Query: 396 AAQTVDIYSVMTVAATLWFADKNALK 421
AAQTVDIY+ VA +WFADK+ALK
Sbjct: 277 AAQTVDIYTCAFVAGCIWFADKDALK 302
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Mediates activation of very-long-chain fatty acids. Probably also able to mediate activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Drosophila melanogaster (taxid: 7227) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q99PU5|ACBG1_MOUSE Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Mus musculus GN=Acsbg1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 149/225 (66%), Gaps = 5/225 (2%)
Query: 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 261
I +Y R VAK FLKLGLER HSV I+GFN+PEWF+S +G ++AGG G+YTT+S
Sbjct: 130 ISYYQYYLIARKVAKGFLKLGLERAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSS 189
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK--PGVISWDEL 319
PEAC + AN+ VV+ KQLEKILK+ P LKA+V Y+ P K V + +EL
Sbjct: 190 PEACQYISHDCRANVIVVDTQKQLEKILKIWKDLPHLKAVVIYQEPPPKKMANVYTMEEL 249
Query: 320 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 379
+ELG+ P+E+LD +++T N+CC LVYTSGT G K VMLS DNIT+ A Q +
Sbjct: 250 IELGQEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGVMLSQDNITWTARYGSQAGDI 309
Query: 380 ESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ A + V+S+LPLSHIAAQ D+++ + A + FAD +ALK
Sbjct: 310 QPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFADPDALK 354
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Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q924N5|ACBG1_RAT Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Rattus norvegicus GN=Acsbg1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 149/225 (66%), Gaps = 5/225 (2%)
Query: 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 261
I +Y R VAK FLKLGLER HSV I+GFN+PEWF+S +G ++AGG G+YTT+S
Sbjct: 130 ISYYQYYLIARKVAKGFLKLGLERAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSS 189
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK--PGVISWDEL 319
PEAC + AN+ VV+ KQLEKILK+ P LKA+V Y+ P K V + +EL
Sbjct: 190 PEACQYIAHDCRANVIVVDTQKQLEKILKIWKDLPHLKAVVIYQEPPPKKMANVYTMEEL 249
Query: 320 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 379
+ELG+ P+E+LD +++T N+CC LVYTSGT G K VMLS DNIT+ A Q +
Sbjct: 250 IELGQEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGVMLSQDNITWTARYGSQAGDI 309
Query: 380 ESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ A + V+S+LPLSHIAAQ D+++ + A + FAD +ALK
Sbjct: 310 QPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFADPDALK 354
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Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q5FVE4|ACBG2_HUMAN Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Homo sapiens GN=ACSBG2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 146/217 (67%), Gaps = 3/217 (1%)
Query: 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 266
YEA R AK+ +KLGLER+H V I+GFN+ EWF + +GAI AGG G+Y TNS E C
Sbjct: 87 YEA-CRKAAKSLIKLGLERFHGVGILGFNSAEWFITAVGAILAGGLCVGIYATNSAEVCQ 145
Query: 267 HCLVTSDANICVVEDDKQLEKILKV-KAQCPKLKAIVQYEGKPDKPG-VISWDELMELGR 324
+ + + NI +VE+D+QL+KIL + ++ LKAI+QY K + SWD+ MELGR
Sbjct: 146 YVITHAKVNILLVENDQQLQKILSIPQSSLEPLKAIIQYRLPMKKNNNLYSWDDFMELGR 205
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+ PD L++V+E+ N+C L+YTSGT G K VMLSHDNIT+ A + + FKL
Sbjct: 206 SIPDTQLEQVIESQKANQCAVLIYTSGTTGIPKGVMLSHDNITWIAGAVTKDFKLTDKHE 265
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+V+S+LPLSHIAAQ +DI+ + + A +FA +ALK
Sbjct: 266 TVVSYLPLSHIAAQMMDIWVPIKIGALTYFAQADALK 302
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Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Also able to activate very long-chain fatty acids; however, the relevance of such activity is unclear in vivo. Has increased ability to activate oleic and linoleic acid. May play a role in spermatogenesis. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q5ZKR7|ACBG2_CHICK Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Gallus gallus GN=ACSBG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 146/227 (64%), Gaps = 6/227 (2%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
++ K Y AK+FLKL LER+H VCI+GFN+PEWF +D+GAI+AGG A G+YTTN
Sbjct: 130 KLTYKMYYDKCWKAAKSFLKLVLERFHGVCILGFNSPEWFIADIGAIFAGGLAVGIYTTN 189
Query: 261 SPEACLHCLVTSDANICVVEDDKQ-LEKILKVKAQCPKLKAIVQY--EGKPDKPGVISWD 317
SPEAC + ANI VVE+ Q K L+++ + P +KAI+QY E K +P SW
Sbjct: 190 SPEACHYVAENCSANILVVENHTQACRKSLEIEHKLPHMKAIIQYGEELKEKRPNQYSWR 249
Query: 318 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
E ++LG PD L ++E+ N+CCTL+YTSGT G K VMLSHDN+T+ + +
Sbjct: 250 EFLDLGEDIPDSQLREIIESQKPNQCCTLIYTSGTTGQPKGVMLSHDNLTWTSIAAGRSL 309
Query: 378 KLESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
L A V+S+LPLSH+AAQ +DI+ +T ++FA +ALK
Sbjct: 310 MLLEATEKQELVVSYLPLSHVAAQMIDIWLPVTFGGQVFFAQPDALK 356
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Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Gallus gallus (taxid: 9031) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q2KHW5|ACBG1_BOVIN Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos taurus GN=ACSBG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 143/225 (63%), Gaps = 5/225 (2%)
Query: 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 261
I +Y R AK FLKLGLER HSV I+ FN+PEWF+S +GA++ GG G+YTT+S
Sbjct: 116 ISYTQYYLLARKAAKGFLKLGLERAHSVAILAFNSPEWFFSAVGAVFGGGIITGIYTTSS 175
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--DKPGVISWDEL 319
PEAC + ANI VV+ KQLEKILK+ P LKA+V Y P P V + +EL
Sbjct: 176 PEACQYIAYDCRANIIVVDTQKQLEKILKIWKHLPHLKAVVIYREAPPMRMPSVYTMEEL 235
Query: 320 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 379
MELG P+E+LD ++ N+CC LVYTSGT G K VMLS DNIT+ A Q +
Sbjct: 236 MELGNEVPEEALDVIINAQKPNQCCALVYTSGTTGNPKGVMLSQDNITWTARYGSQAGDI 295
Query: 380 ESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ A + V+S+LPLSHIAAQ D+++ + A + FA+ +ALK
Sbjct: 296 QPAEIQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAEPDALK 340
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q4R4P9|ACBG1_MACFA Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Macaca fascicularis GN=ACSBG1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 147/225 (65%), Gaps = 5/225 (2%)
Query: 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 261
I +Y R AK FLKLGLER HSV I+GFN+PEWF+S +G ++AGG G+YTT+S
Sbjct: 133 ISYSQYYLLARRAAKGFLKLGLERAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSS 192
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY-EGKPDK-PGVISWDEL 319
PEAC + AN+ +V+ KQLEKILKV Q P LKA+V Y E P+K V + +E
Sbjct: 193 PEACQYIAYDCCANVIMVDTQKQLEKILKVWKQLPHLKAVVIYKEPPPNKMANVYTMEEF 252
Query: 320 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 379
MELG P+E+LD +++T N+CC LVYTSGT G K VMLS DNIT+ A Q +
Sbjct: 253 MELGNEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGVMLSQDNITWTARYGSQAGDI 312
Query: 380 ESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
A + V+S+LPLSHIAAQ D+++ + A + FA+ +ALK
Sbjct: 313 RPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAEPDALK 357
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Macaca fascicularis (taxid: 9541) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q96GR2|ACBG1_HUMAN Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Homo sapiens GN=ACSBG1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 147/225 (65%), Gaps = 5/225 (2%)
Query: 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 261
I +Y R AK FLKLGL++ HSV I+GFN+PEWF+S +G ++AGG G+YTT+S
Sbjct: 133 ISYSQYYLLARRAAKGFLKLGLKQAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSS 192
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY-EGKPDK-PGVISWDEL 319
PEAC + AN+ +V+ KQLEKILK+ Q P LKA+V Y E P+K V + +E
Sbjct: 193 PEACQYIAYDCCANVIMVDTQKQLEKILKIWKQLPHLKAVVIYKEPPPNKMANVYTMEEF 252
Query: 320 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 379
MELG P+E+LD +++T N+CC LVYTSGT G K VMLS DNIT+ A Q +
Sbjct: 253 MELGNEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGVMLSQDNITWTARYGSQAGDI 312
Query: 380 ESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
A + V+S+LPLSHIAAQ D+++ + A + FA+ +ALK
Sbjct: 313 RPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAEPDALK 357
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Also able to activate very long-chain fatty acids; however, the relevance of such activity is unclear in vivo. Can activate diverse saturated, monosaturated and polyunsaturated fatty acids. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|A1L1K7|ACBG2_RAT Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Rattus norvegicus GN=Acsbg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 142/226 (62%), Gaps = 6/226 (2%)
Query: 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 261
+ +Y R A++ +KLGL+R+H V I+GFN+ EW + LGAI AGG G+Y TNS
Sbjct: 77 LTFSQYYDVCRKAARSLIKLGLQRFHGVGILGFNSVEWVVAALGAILAGGLCVGIYATNS 136
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKA-QCPKLKAIVQYE--GKPDKPGVISWDE 318
EAC + + ++ N+ +VE+D+QL+KIL + + +KAIVQY + + SW +
Sbjct: 137 AEACQYVIKQANVNVLIVENDQQLQKILSIPPDKMETVKAIVQYRLPLMENSTNLYSWQD 196
Query: 319 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI---IQ 375
MELG A P+ LDRV+ + N+C ++YTSGT G+ K VMLSHDNIT+ A + I+
Sbjct: 197 FMELGNAIPNIQLDRVILSQKANQCAVIIYTSGTTGSPKGVMLSHDNITWTAGAMAREIE 256
Query: 376 YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ +++S+LPLSHIAAQ +DI+ + V +FA +AL+
Sbjct: 257 LIHVSGKQDTIVSYLPLSHIAAQLMDIWIPIKVGVLTFFAQPDALR 302
|
Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Able to activate long-chain fatty acids. Has increased ability to activate oleic and linoleic acid. May play a role in spermatogenesis. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | ||||||
| 328708315 | 693 | PREDICTED: long-chain-fatty-acid--CoA li | 0.421 | 0.295 | 0.642 | 3e-83 | |
| 328792515 | 656 | PREDICTED: long-chain-fatty-acid--CoA li | 0.475 | 0.352 | 0.586 | 1e-76 | |
| 345488807 | 663 | PREDICTED: very long-chain-fatty-acid--C | 0.446 | 0.327 | 0.646 | 2e-76 | |
| 340708785 | 684 | PREDICTED: long-chain-fatty-acid--CoA li | 0.512 | 0.364 | 0.540 | 4e-76 | |
| 380023570 | 686 | PREDICTED: LOW QUALITY PROTEIN: long-cha | 0.541 | 0.383 | 0.510 | 1e-75 | |
| 350419229 | 693 | PREDICTED: long-chain-fatty-acid--CoA li | 0.469 | 0.329 | 0.576 | 3e-75 | |
| 350419227 | 684 | PREDICTED: long-chain-fatty-acid--CoA li | 0.469 | 0.333 | 0.576 | 4e-75 | |
| 383861932 | 616 | PREDICTED: long-chain-fatty-acid--CoA li | 0.497 | 0.392 | 0.576 | 1e-74 | |
| 91076084 | 657 | PREDICTED: similar to AGAP008596-PA [Tri | 0.378 | 0.280 | 0.601 | 8e-73 | |
| 307188070 | 689 | Long-chain-fatty-acid--CoA ligase ACSBG2 | 0.372 | 0.262 | 0.599 | 2e-71 |
| >gi|328708315|ref|XP_001945956.2| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 142/221 (64%), Positives = 179/221 (80%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
++ KEYE NVRTVAKAF+KLGLER+H VCIIGFN+PEWFYSDLGAIYAGGFAAGMYTTN
Sbjct: 109 KVTYKEYEQNVRTVAKAFIKLGLERFHGVCIIGFNSPEWFYSDLGAIYAGGFAAGMYTTN 168
Query: 261 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELM 320
+ACLHCL TS ANI VVED KQLEKIL +K++ P LKAI+QYEGKP + GV+SW+++M
Sbjct: 169 LVDACLHCLETSKANIAVVEDSKQLEKILSIKSRLPHLKAIIQYEGKPTEEGVLSWEDVM 228
Query: 321 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 380
+G A D+ L+ +L+T+ NECCTLV+TSGTEGASK VM+SHDN+T+NA I + L
Sbjct: 229 RIGSAESDDKLNAILKTMGVNECCTLVFTSGTEGASKAVMVSHDNLTYNAYVITNFLSLT 288
Query: 381 SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
++S+LPLSH+AAQ DIYS +++ A ++F +K+ALK
Sbjct: 289 DGKEVLVSYLPLSHVAAQITDIYSAISIGAQVFFGEKDALK 329
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328792515|ref|XP_624225.3| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/232 (58%), Positives = 174/232 (75%), Gaps = 1/232 (0%)
Query: 191 IVDPDEEG-NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 249
+ PDE G EYE VRTVAKAFLKLGLERYH VCI+GFN+PEW +++LGAIYA
Sbjct: 92 VTRPDENGIRKTYTYSEYENQVRTVAKAFLKLGLERYHGVCILGFNSPEWLFANLGAIYA 151
Query: 250 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD 309
GGFA G+YTTN+PEAC HC + S ANI VVE+ KQLEKIL++K P LK IVQYEGKP+
Sbjct: 152 GGFAVGIYTTNNPEACQHCAIISKANIIVVENTKQLEKILQIKHNLPHLKVIVQYEGKPE 211
Query: 310 KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 369
+ ++SW++L+++G A D L+ VL+TIA NECCTLV+TSGT G K VMLSHDN N
Sbjct: 212 EKDILSWNDLIKIGEAESDVKLNEVLKTIAVNECCTLVFTSGTVGNPKAVMLSHDNFLSN 271
Query: 370 AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ +L+ +++S+LPLSH+AAQ VDIY ++ +A T++FAD+NALK
Sbjct: 272 VRSMSMALELKEGYETLVSYLPLSHVAAQVVDIYFMLYIAGTIYFADQNALK 323
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345488807|ref|XP_001606071.2| PREDICTED: very long-chain-fatty-acid--CoA ligase bubblegum-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/218 (64%), Positives = 173/218 (79%), Gaps = 1/218 (0%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
KEYE+ VRTVAKAFL LGLER+HSVCI+GFNAP+WF SD+ AIYAGGFAAG+YTTNSPEA
Sbjct: 109 KEYESQVRTVAKAFLHLGLERHHSVCILGFNAPQWFISDIAAIYAGGFAAGIYTTNSPEA 168
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
C +C +S ANI VVED KQLEKIL++K PKLKAI+QY+G P V+SW+EL+E+G+
Sbjct: 169 CQYCAESSRANIIVVEDAKQLEKILEIKKNLPKLKAIIQYDGIPSTKDVLSWNELLEIGQ 228
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
D+ L+ VL+TI NECCTLVYTSGT G K VML+HDN+ +A I+ L A
Sbjct: 229 RQSDDQLETVLKTIGINECCTLVYTSGTVGNPKAVMLTHDNLLTDARAILAAGDLNREAQ 288
Query: 385 -SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+VISFLPLSH+AAQ VDI++ M ++AT++FADKNALK
Sbjct: 289 ETVISFLPLSHVAAQVVDIFTCMLMSATVYFADKNALK 326
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340708785|ref|XP_003393002.1| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 139/257 (54%), Positives = 182/257 (70%), Gaps = 8/257 (3%)
Query: 173 DDFK-------LDGVGRTIPGTQTKIVDPDEEGNGEI-CLKEYEANVRTVAKAFLKLGLE 224
+DFK L R P PDE G+ + EYE ++TVAKAFLKLGLE
Sbjct: 65 EDFKPISVPGLLSNTVRKYPNHIALAATPDETGHRKTYTFIEYENQIKTVAKAFLKLGLE 124
Query: 225 RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ 284
R+H VCI+GFN+PEW +S+LGAIYAGG A G+Y TN+P+AC HCL S ANI VVED KQ
Sbjct: 125 RFHGVCILGFNSPEWLFSNLGAIYAGGIAVGIYATNTPDACQHCLQISQANIVVVEDSKQ 184
Query: 285 LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344
LEKIL+++ P LKAI+QY G P++ V+SW++L+++G A D+ L+ +L+ IATNECC
Sbjct: 185 LEKILQIRHNLPHLKAIIQYTGTPNEKDVLSWNDLIKIGEAESDDKLNEILKRIATNECC 244
Query: 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 404
TLV+TSGT G K VMLSHDN+ +N + + FK ++A +IS+LPLSH+AAQ +DIY
Sbjct: 245 TLVFTSGTVGYPKAVMLSHDNLIYNVRSMNRVFKFKTACEHIISYLPLSHVAAQAIDIYY 304
Query: 405 VMTVAATLWFADKNALK 421
+ + ATL FAD+NALK
Sbjct: 305 SIYIVATLHFADRNALK 321
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380023570|ref|XP_003695591.1| PREDICTED: LOW QUALITY PROTEIN: long-chain-fatty-acid--CoA ligase ACSBG2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 190/276 (68%), Gaps = 13/276 (4%)
Query: 158 FGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD-----------PDEEG-NGEICLK 205
F +E G + +D ++ + +IPG + V PDE G
Sbjct: 48 FKTTEYNGCVRIQLNND-DVNSMPISIPGLMSNTVKKYSNHLALVARPDENGIRKTYTYS 106
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
EYE+ V+TVA+AFLKLGLERYH VCI+GFN+PEW +++LGAIYAGGFA G+YTTN+PEAC
Sbjct: 107 EYESQVKTVARAFLKLGLERYHGVCILGFNSPEWLFANLGAIYAGGFAVGIYTTNNPEAC 166
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 325
HC V S ANI VVE+ KQLEKIL++K P LK IVQYEGKP++ ++SW++L+++G A
Sbjct: 167 QHCAVISKANIIVVENRKQLEKILQIKQNLPHLKVIVQYEGKPEQKDILSWNDLIKIGEA 226
Query: 326 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS 385
D L+ VL+TIA NECCTLV+TSGT G K VM+SHDN N + +L+ +
Sbjct: 227 ESDVKLNEVLKTIAVNECCTLVFTSGTVGNPKAVMISHDNFLSNVRSLSNSLELKEGCET 286
Query: 386 VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
++S+LPLSH+AAQ VD+Y ++ +A T++FAD+NALK
Sbjct: 287 LVSYLPLSHVAAQVVDLYFMLYIAGTIYFADQNALK 322
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350419229|ref|XP_003492113.1| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like isoform 2 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 172/229 (75%), Gaps = 1/229 (0%)
Query: 194 PDEEGNGEI-CLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 252
PDE G+ EYE ++ VAKAF+K GLER+H VCI+GFN+PEW +S+LGAIYAGG
Sbjct: 102 PDETGHRRTYTFTEYENQIKIVAKAFIKFGLERFHGVCILGFNSPEWLFSNLGAIYAGGI 161
Query: 253 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG 312
A G+YTTN+P+AC HCL TS ANI VVED KQLEKIL+++ P LKAI+QY G P++
Sbjct: 162 AVGIYTTNTPDACQHCLQTSQANIVVVEDSKQLEKILQIRHNLPHLKAIIQYTGTPNEKD 221
Query: 313 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 372
V+SW++L+++G A D+ L+ +L+ IATNECCTLV+TSGT G K VMLSHDN+ N
Sbjct: 222 VLSWNDLIKIGEAESDDKLNEILKRIATNECCTLVFTSGTVGYPKAVMLSHDNLIHNVRS 281
Query: 373 IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ + FK ++A +IS+LPLSH+AAQ +DIY + ATL FAD+NALK
Sbjct: 282 MNRTFKFKTAYQHIISYLPLSHVAAQIIDIYYCIYTVATLHFADRNALK 330
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350419227|ref|XP_003492112.1| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like isoform 1 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 172/229 (75%), Gaps = 1/229 (0%)
Query: 194 PDEEGNGEI-CLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 252
PDE G+ EYE ++ VAKAF+K GLER+H VCI+GFN+PEW +S+LGAIYAGG
Sbjct: 93 PDETGHRRTYTFTEYENQIKIVAKAFIKFGLERFHGVCILGFNSPEWLFSNLGAIYAGGI 152
Query: 253 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG 312
A G+YTTN+P+AC HCL TS ANI VVED KQLEKIL+++ P LKAI+QY G P++
Sbjct: 153 AVGIYTTNTPDACQHCLQTSQANIVVVEDSKQLEKILQIRHNLPHLKAIIQYTGTPNEKD 212
Query: 313 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 372
V+SW++L+++G A D+ L+ +L+ IATNECCTLV+TSGT G K VMLSHDN+ N
Sbjct: 213 VLSWNDLIKIGEAESDDKLNEILKRIATNECCTLVFTSGTVGYPKAVMLSHDNLIHNVRS 272
Query: 373 IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ + FK ++A +IS+LPLSH+AAQ +DIY + ATL FAD+NALK
Sbjct: 273 MNRTFKFKTAYQHIISYLPLSHVAAQIIDIYYCIYTVATLHFADRNALK 321
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383861932|ref|XP_003706438.1| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/243 (57%), Positives = 172/243 (70%), Gaps = 1/243 (0%)
Query: 180 VGRTIPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEW 239
+ + P I PD + +EYE VRTVAKAFLKLGLERYH V IIGFN PEW
Sbjct: 10 MANSYPDRMALIARPDTKQKKSYTFREYEQEVRTVAKAFLKLGLERYHGVAIIGFNTPEW 69
Query: 240 FYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLK 299
F SDL AIYAGGFA G+YTTN+PEAC HC+ S +NI VVEDDKQLEKILK+K P LK
Sbjct: 70 FVSDLAAIYAGGFAVGVYTTNTPEACQHCIENSQSNIVVVEDDKQLEKILKIKDNLPFLK 129
Query: 300 AIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359
AIV Y+ P + GV+SW +L+E+G+ D+ L+ VL+TIA NECCTL+YTSGT G K V
Sbjct: 130 AIVMYDDVPKEKGVLSWKDLLEIGQKESDDKLNEVLKTIAANECCTLIYTSGTVGKPKAV 189
Query: 360 MLSHDNITFNAACIIQYFKLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 418
MLSHDN+ +A I+++ K V IS+LPLSH+AAQ +DIY M + T++FA K+
Sbjct: 190 MLSHDNLLQDARSILRFTKFSIDDKHVLISYLPLSHVAAQILDIYCTMLLGGTVYFAAKD 249
Query: 419 ALK 421
ALK
Sbjct: 250 ALK 252
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076084|ref|XP_967873.1| PREDICTED: similar to AGAP008596-PA [Tribolium castaneum] gi|270014586|gb|EFA11034.1| hypothetical protein TcasGA2_TC004625 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 133/221 (60%), Positives = 164/221 (74%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
+I KEY VRT AKAF+KLGLER+H+VCI+GFN+PEWF SDL AI+AGG A G+YTTN
Sbjct: 73 KITYKEYYELVRTCAKAFIKLGLERHHAVCILGFNSPEWFISDLAAIFAGGIAVGIYTTN 132
Query: 261 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELM 320
S EAC HC S ANI VV+D KQLEKIL +K++ P LKAI+QYEG P VISW++L+
Sbjct: 133 SSEACFHCANHSRANIIVVQDQKQLEKILAIKSRLPHLKAIIQYEGTPTSADVISWEDLL 192
Query: 321 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 380
+GR DE L+RVL+TI NECCTLVYTSGT G K VMLSHDN+T++A I + ++
Sbjct: 193 IIGRDQEDEDLERVLKTIGVNECCTLVYTSGTVGKPKAVMLSHDNLTWDALSICERLDVK 252
Query: 381 SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
++S+LPLSH+AAQ DIY M A ++FAD NALK
Sbjct: 253 KGEEVIVSYLPLSHVAAQVTDIYIAMMYAVCIYFADANALK 293
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307188070|gb|EFN72902.1| Long-chain-fatty-acid--CoA ligase ACSBG2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/217 (59%), Positives = 162/217 (74%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+EYE VRTVAKAFLKLGLERYHSVCI+GFN+PEWF +DL AIYAGGFA G+YTT+SP+A
Sbjct: 109 REYEQAVRTVAKAFLKLGLERYHSVCILGFNSPEWFITDLAAIYAGGFATGIYTTSSPDA 168
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
C +C S ANI VVED KQLEKIL+++ P LKA+VQY G P + ++SW++L+E+G+
Sbjct: 169 CQYCAEHSQANIIVVEDTKQLEKILQIRQNLPNLKAVVQYNGIPTEKDILSWNDLLEIGK 228
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
D L VL+TI NECCTLVYTSGT G K VMLSHDN+ + I ++ +
Sbjct: 229 QESDSKLLSVLKTIGANECCTLVYTSGTVGNPKAVMLSHDNLLHDVRMIFSAIQVNEKSE 288
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
V+S+LPLSH+AAQ DI + VA T++FADKNALK
Sbjct: 289 IVVSYLPLSHVAAQLCDIIGSVLVATTVYFADKNALK 325
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | ||||||
| ZFIN|ZDB-GENE-030131-7099 | 794 | acsbg2 "acyl-CoA synthetase bu | 0.444 | 0.272 | 0.542 | 1.1e-82 | |
| FB|FBgn0027348 | 666 | bgm "bubblegum" [Drosophila me | 0.493 | 0.360 | 0.478 | 2e-73 | |
| UNIPROTKB|F1NLD6 | 643 | ACSBG1 "Uncharacterized protei | 0.454 | 0.343 | 0.455 | 2.9e-71 | |
| UNIPROTKB|Q5FVE4 | 666 | ACSBG2 "Long-chain-fatty-acid- | 0.440 | 0.321 | 0.488 | 6.7e-70 | |
| UNIPROTKB|F1PS77 | 671 | ACSBG2 "Uncharacterized protei | 0.438 | 0.317 | 0.45 | 3.6e-69 | |
| UNIPROTKB|E1BCN4 | 678 | ACSBG2 "Uncharacterized protei | 0.440 | 0.315 | 0.454 | 2.5e-68 | |
| ZFIN|ZDB-GENE-110914-219 | 674 | acsbg1 "acyl-CoA synthetase bu | 0.444 | 0.320 | 0.497 | 6e-68 | |
| UNIPROTKB|Q96GR2 | 724 | ACSBG1 "Long-chain-fatty-acid- | 0.452 | 0.303 | 0.484 | 2.2e-67 | |
| UNIPROTKB|F1SBT8 | 674 | ACSBG2 "Uncharacterized protei | 0.514 | 0.370 | 0.434 | 1.1e-66 | |
| MGI|MGI:2385656 | 721 | Acsbg1 "acyl-CoA synthetase bu | 0.444 | 0.299 | 0.502 | 6.1e-66 |
| ZFIN|ZDB-GENE-030131-7099 acsbg2 "acyl-CoA synthetase bubblegum family member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 1.1e-82, Sum P(3) = 1.1e-82
Identities = 120/221 (54%), Positives = 151/221 (68%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
EY + RT AK+FLKLGLERYH V I+GFN+ EWF +D+ AI AGGFA G+YTTNSPEAC
Sbjct: 193 EYYKSCRTAAKSFLKLGLERYHGVGILGFNSTEWFIADIAAILAGGFAVGIYTTNSPEAC 252
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY--EGKPDKPGVISWDELMELG 323
+ ANI VVE+ KQL+KIL+++ + P LKAI+QY E K KP + +W E MELG
Sbjct: 253 QYVAENCQANILVVENHKQLQKILQIQDKLPHLKAIIQYKDELKEKKPNLYTWAEFMELG 312
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA- 382
R PD LD ++ + N+CCTL+YTSGT G K VMLSHDN+T+ A Q+ L A
Sbjct: 313 RDEPDTQLDDIISSQKPNQCCTLIYTSGTTGQPKGVMLSHDNLTWTAVATSQHVSLNDAD 372
Query: 383 ALS--VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
L V+S+LPLSHIAAQ +DI+ M +FA +ALK
Sbjct: 373 KLQEVVVSYLPLSHIAAQMIDIWLPMKAGGVTYFAQPDALK 413
|
|
| FB|FBgn0027348 bgm "bubblegum" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 122/255 (47%), Positives = 164/255 (64%)
Query: 185 PGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDL 244
P +TK + G + K+YE V VAKAF+KLGLE +HSV ++ FN EWFYS +
Sbjct: 63 PALRTK---NGKNGYHTVTYKQYEQKVHQVAKAFIKLGLEEHHSVGVLAFNCAEWFYSAM 119
Query: 245 GAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY 304
GAI+A G AG+YTTNS +A H L +S A I VV+D KQ++KI ++ + PKLKA +Q
Sbjct: 120 GAIHARGIIAGIYTTNSADAVQHVLESSHAQIVVVDDAKQMDKIHAIRDKLPKLKAAIQI 179
Query: 305 EGKPDKP------GVISWDELMELGRA-APDESLDRVLETIATNECCTLVYTSGTEGASK 357
+ +P P G W E+ + + D+ + R LE +A NECC LVYTSGT G K
Sbjct: 180 Q-EPYSPYLKKEDGYYRWSEIESMNVSDVEDQYMTR-LENVAINECCCLVYTSGTVGMPK 237
Query: 358 PVMLSHDNITFNAACIIQYF-KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
VMLSHDNITF+ I++ ++ A S++S+LPLSH+AAQTVDIY+ VA +WFAD
Sbjct: 238 GVMLSHDNITFDVRGIVKAMDRVVVGAESIVSYLPLSHVAAQTVDIYTCAFVAGCIWFAD 297
Query: 417 KNALK--VYKATQAA 429
K+ALK + K+ Q A
Sbjct: 298 KDALKGTLVKSLQDA 312
|
|
| UNIPROTKB|F1NLD6 ACSBG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 2.9e-71, Sum P(3) = 2.9e-71
Identities = 103/226 (45%), Positives = 149/226 (65%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
+I EY R AK+FLKLGLER+HSV I+GFN+PEWF S +GA++AGG G+YTTN
Sbjct: 53 KITFSEYYCLSRKAAKSFLKLGLERFHSVAILGFNSPEWFISAVGAVFAGGIVTGIYTTN 112
Query: 261 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK--PDKPGVISWDE 318
SPEAC + S NI VVE+ KQL+KI+++ + P LKA+V Y+ P + + +E
Sbjct: 113 SPEACHYIAYDSKTNIMVVENRKQLDKIMQIWNRLPHLKAVVLYKDSILERHPNLYTMEE 172
Query: 319 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK 378
++LG D +LD ++ + N+CC L+YTSGT G K MLSHDNIT+ +A +
Sbjct: 173 FLKLGDDISDVTLDDIINSQKPNQCCVLIYTSGTTGKPKGAMLSHDNITWTSAHCSRAGD 232
Query: 379 LESAAL---SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
++ A + S++S+LPLSHIAAQ D+++ + ++FA+ +ALK
Sbjct: 233 MQPAEVQQESIVSYLPLSHIAAQIYDLWTGIKWGEQVYFAEPDALK 278
|
|
| UNIPROTKB|Q5FVE4 ACSBG2 "Long-chain-fatty-acid--CoA ligase ACSBG2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 6.7e-70, Sum P(3) = 6.7e-70
Identities = 106/217 (48%), Positives = 146/217 (67%)
Query: 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 266
YEA R AK+ +KLGLER+H V I+GFN+ EWF + +GAI AGG G+Y TNS E C
Sbjct: 87 YEA-CRKAAKSLIKLGLERFHGVGILGFNSAEWFITAVGAILAGGLCVGIYATNSAEVCQ 145
Query: 267 HCLVTSDANICVVEDDKQLEKILKV-KAQCPKLKAIVQYEGKPDKPG-VISWDELMELGR 324
+ + + NI +VE+D+QL+KIL + ++ LKAI+QY K + SWD+ MELGR
Sbjct: 146 YVITHAKVNILLVENDQQLQKILSIPQSSLEPLKAIIQYRLPMKKNNNLYSWDDFMELGR 205
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+ PD L++V+E+ N+C L+YTSGT G K VMLSHDNIT+ A + + FKL
Sbjct: 206 SIPDTQLEQVIESQKANQCAVLIYTSGTTGIPKGVMLSHDNITWIAGAVTKDFKLTDKHE 265
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+V+S+LPLSHIAAQ +DI+ + + A +FA +ALK
Sbjct: 266 TVVSYLPLSHIAAQMMDIWVPIKIGALTYFAQADALK 302
|
|
| UNIPROTKB|F1PS77 ACSBG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 3.6e-69, Sum P(3) = 3.6e-69
Identities = 99/220 (45%), Positives = 146/220 (66%)
Query: 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 266
YEA R A+A +KLGL+R+H V I+GFN+ EW + LGAI AGG G+Y TNS +AC
Sbjct: 88 YEA-CRKAARALIKLGLQRFHGVGILGFNSVEWLIASLGAILAGGLCVGIYATNSADACQ 146
Query: 267 HCLVTSDANICVVEDDKQLEKILKV-KAQCPKLKAIVQYE--GKPDKPGVISWDELMELG 323
+ + + N+ +VE+D QL+KIL + +++ LKAI+QY+ K + SW++ MELG
Sbjct: 147 YVITNAKVNVLLVENDLQLQKILSIPQSRMETLKAIIQYKLPVKESNNNLYSWNDFMELG 206
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
+ PD LD+++E+ N+C ++YTSGT G K VMLSHDNIT+ A + + L +AA
Sbjct: 207 NSIPDSQLDQIIESQRANQCAVIIYTSGTLGNPKGVMLSHDNITWTAGAVAKNCSLSNAA 266
Query: 384 LS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL 420
V+S+LPLSH+AAQ +D++ M + A ++FA +AL
Sbjct: 267 EKQEVVVSYLPLSHVAAQMMDVWIPMKIGAFIYFAQPDAL 306
|
|
| UNIPROTKB|E1BCN4 ACSBG2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
Identities = 101/222 (45%), Positives = 145/222 (65%)
Query: 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 266
YEA R A+A LKLGLE +HSV I+GFN+ EW + LGAI+AGGF G+Y TN +AC
Sbjct: 94 YEA-CRKTARAMLKLGLEPFHSVGILGFNSIEWILAALGAIFAGGFCVGIYATNFADACE 152
Query: 267 HCLVTSDANICVVEDDKQLEKILKVKA-QCPKLKAIVQYEGKPDKP---GVISWDELMEL 322
+ + + NI ++E++ QL+KIL + + LKAIVQY+ D + SWD+ +EL
Sbjct: 153 YVITHAKVNILLLENNAQLQKILSIPMNKMETLKAIVQYKPPVDDSKCENLYSWDDFLEL 212
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 382
G + PD LD+++++ N+C ++YTSGT G K VMLSHDNIT+ A + + L A
Sbjct: 213 GSSIPDAQLDQIIKSQKANQCAVIIYTSGTTGQPKGVMLSHDNITWTAGSVAKECNLAYA 272
Query: 383 ALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
V+S+LPLSHIAAQ +D++ + V A ++FA+ +ALK
Sbjct: 273 PEKQEVVVSYLPLSHIAAQMMDVWVPIKVGAFIYFAEPDALK 314
|
|
| ZFIN|ZDB-GENE-110914-219 acsbg1 "acyl-CoA synthetase bubblegum family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 110/221 (49%), Positives = 146/221 (66%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
EY R AK FLKLGLE++H V I+GFN+ EWF + +G ++AGG AG+YTTNSP+AC
Sbjct: 90 EYYHLCRMAAKGFLKLGLEQFHGVAILGFNSAEWFIAAVGTVFAGGIMAGIYTTNSPDAC 149
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG--KPDKPGVISWDELMELG 323
LH S AN+ VVE+ KQL+KI++VK + P LKAIVQY G K + SW+E MELG
Sbjct: 150 LHVANDSRANVIVVENQKQLDKIMQVKDKLPHLKAIVQYSGSLKEKLANLYSWEEFMELG 209
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
D LD V+ N+CC L+YTSGT G+ K VMLSHDNIT+ A + ++ A
Sbjct: 210 LEVSDHELDEVISKQRANQCCVLIYTSGTTGSPKGVMLSHDNITWTAHHASRAGDMQPAE 269
Query: 384 L---SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ S++S+LPLSHIAAQ D+++ + + FA +ALK
Sbjct: 270 IRQESLVSYLPLSHIAAQIYDLWTGIKWGEQISFAQPDALK 310
|
|
| UNIPROTKB|Q96GR2 ACSBG1 "Long-chain-fatty-acid--CoA ligase ACSBG1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 2.2e-67, Sum P(3) = 2.2e-67
Identities = 109/225 (48%), Positives = 147/225 (65%)
Query: 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 261
I +Y R AK FLKLGL++ HSV I+GFN+PEWF+S +G ++AGG G+YTT+S
Sbjct: 133 ISYSQYYLLARRAAKGFLKLGLKQAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSS 192
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY-EGKPDK-PGVISWDEL 319
PEAC + AN+ +V+ KQLEKILK+ Q P LKA+V Y E P+K V + +E
Sbjct: 193 PEACQYIAYDCCANVIMVDTQKQLEKILKIWKQLPHLKAVVIYKEPPPNKMANVYTMEEF 252
Query: 320 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 379
MELG P+E+LD +++T N+CC LVYTSGT G K VMLS DNIT+ A Q +
Sbjct: 253 MELGNEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGVMLSQDNITWTARYGSQAGDI 312
Query: 380 ESAALS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
A + V+S+LPLSHIAAQ D+++ + A + FA+ +ALK
Sbjct: 313 RPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAEPDALK 357
|
|
| UNIPROTKB|F1SBT8 ACSBG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 113/260 (43%), Positives = 158/260 (60%)
Query: 169 VSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHS 228
++ P+ F+ + V R GT + E + +Y R KA +KLGLE +HS
Sbjct: 54 MTIPEFFR-ESVSRF--GTYPALASKKNEQWEVLNFNQYYEACRKAGKAMMKLGLEPFHS 110
Query: 229 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKI 288
V I+GFN+ EW + LGAI AGGF G+Y TNS +AC + + + NI +VE+D QL+KI
Sbjct: 111 VGILGFNSVEWLIAALGAILAGGFCVGIYATNSTDACQYVITHAKVNILIVENDMQLQKI 170
Query: 289 LKV-KAQCPKLKAIVQYEG--KPDKPG-VISWDELMELGRAAPDESLDRVLETIATNECC 344
L + K++ LKAI+QY+ K K + SWD+ MELGR+ PD LD+++ N+C
Sbjct: 171 LAIPKSRMETLKAIIQYKVPVKESKSNNLYSWDDFMELGRSIPDAQLDQIIRNQKANQCA 230
Query: 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQTVD 401
++YTSGT G K VMLSHDNIT+ A + + L A V+S+LPLSHIAAQ +D
Sbjct: 231 VIIYTSGTIGNPKGVMLSHDNITWMAGAAAREYNLAYACERQEVVVSYLPLSHIAAQMMD 290
Query: 402 IYSVMTVAATLWFADKNALK 421
++ M V A ++FA NALK
Sbjct: 291 VWIPMKVGAFIYFAQPNALK 310
|
|
| MGI|MGI:2385656 Acsbg1 "acyl-CoA synthetase bubblegum family member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 111/221 (50%), Positives = 148/221 (66%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
+Y R VAK FLKLGLER HSV I+GFN+PEWF+S +G ++AGG G+YTT+SPEAC
Sbjct: 134 QYYLIARKVAKGFLKLGLERAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSSPEAC 193
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKP--GVISWDELMELG 323
+ AN+ VV+ KQLEKILK+ P LKA+V Y+ P K V + +EL+ELG
Sbjct: 194 QYISHDCRANVIVVDTQKQLEKILKIWKDLPHLKAVVIYQEPPPKKMANVYTMEELIELG 253
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
+ P+E+LD +++T N+CC LVYTSGT G K VMLS DNIT+ A Q ++ A
Sbjct: 254 QEVPEEALDAIIDTQQPNQCCVLVYTSGTTGNPKGVMLSQDNITWTARYGSQAGDIQPAE 313
Query: 384 LS---VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
+ V+S+LPLSHIAAQ D+++ + A + FAD +ALK
Sbjct: 314 VQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFADPDALK 354
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 486 | |||
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-104 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-43 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 6e-37 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-36 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-26 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 5e-26 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-23 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-22 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 4e-21 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 2e-20 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 6e-20 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-19 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-17 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 4e-16 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 4e-15 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-13 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-13 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 7e-13 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-12 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-12 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 9e-12 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-11 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-11 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 6e-11 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 7e-11 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-10 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-10 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 4e-10 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 5e-10 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 6e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 7e-10 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 1e-09 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 2e-09 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-09 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 3e-09 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-09 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 6e-09 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 8e-09 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 9e-09 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-08 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-08 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-08 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 3e-08 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 4e-08 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 5e-08 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-07 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-07 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-07 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-07 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 2e-07 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 5e-07 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 5e-07 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 5e-07 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-06 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-06 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-06 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 3e-06 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 4e-06 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 4e-06 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 4e-06 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 8e-06 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-05 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-05 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 2e-05 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-05 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 3e-05 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 4e-05 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-05 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 4e-05 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 5e-05 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 5e-05 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 5e-05 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 7e-05 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 7e-05 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-05 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 7e-05 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 8e-05 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 8e-05 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 8e-05 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 9e-05 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-04 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-04 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-04 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 2e-04 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-04 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-04 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-04 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 4e-04 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 4e-04 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 4e-04 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 5e-04 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 6e-04 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 6e-04 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 7e-04 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 8e-04 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 8e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 0.001 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 0.002 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 0.002 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 0.002 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 0.002 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 0.002 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.002 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 0.002 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 0.003 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 0.003 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 0.003 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.003 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 0.003 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 0.003 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 0.004 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 322 bits (826), Expect = e-104
Identities = 122/220 (55%), Positives = 159/220 (72%), Gaps = 3/220 (1%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
K+Y R AKAFLKLGLER+HSV I+GFN+PEWF + +GAI+AGG A G+YTTNSPEA
Sbjct: 12 KQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSPEA 71
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG--KPDKPGVISWDELMEL 322
C + TS+ANI VV++ KQL+KIL ++ Q P LKAI+QY K +P + SW E MEL
Sbjct: 72 CQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLYSWKEFMEL 131
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL-ES 381
GR+ PDE LD ++E+ N+CCTL+YTSGT G K VMLSHDNIT+ A +++ L
Sbjct: 132 GRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTV 191
Query: 382 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421
SV+S+LPLSHIAAQ +DI+ ++V ++FA +ALK
Sbjct: 192 GQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALK 231
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-43
Identities = 62/143 (43%), Positives = 95/143 (66%), Gaps = 5/143 (3%)
Query: 67 WKKVTYKLQT-----TGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVK 121
W+K+ +++ TG+KR IA++AK L+ + + P +RL + L+ KV+
Sbjct: 253 WEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESPPPMCFRLAKKLVFKKVR 312
Query: 122 QAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVG 181
+A+GLDRC+ +GAAPIS E +FLSL+IPI E++GMSE +G HTVS P +++L G
Sbjct: 313 KALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSGPHTVSNPQNYRLLSCG 372
Query: 182 RTIPGTQTKIVDPDEEGNGEICL 204
+ +PG +TKI +PD +G GEIC+
Sbjct: 373 KALPGCETKIHNPDADGIGEICI 395
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 6e-37
Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 13/235 (5%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+E VR +A L LG+ V I N PEW +DL + G + +Y+T++PE
Sbjct: 49 RELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQ 108
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV----QYEGKPDKPGVISWDELM 320
+ L S++ + VE+ + L+ +L V CPK+ ++ + + +
Sbjct: 109 LAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE-AKALVLEVFP 167
Query: 321 ELGRAAPDESLDRVLETIAT---NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
+ G + + IA ++ T++YTSGT G K VML+H N+ A I +
Sbjct: 168 DEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL 227
Query: 378 KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD-----KNALKVYKATQ 427
V+SFLPL+HI + + + T+ F + LK + T
Sbjct: 228 PPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTV 282
|
Length = 613 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 2e-36
Identities = 59/212 (27%), Positives = 86/212 (40%), Gaps = 58/212 (27%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E VR +A + LG++ V I+ N PEW +DL + AG +Y T+SPE
Sbjct: 9 AELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSSPEE 68
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
+ L S A + VE DKP
Sbjct: 69 VAYILNDSGARVVFVE----------------------------DKP------------- 87
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
++ TL+YTSGT G K VML+H N+ AA +++ L S
Sbjct: 88 ----------------DDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPL-SPGD 130
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
V+SFLPL+H+ Q + Y ++ A + FA+
Sbjct: 131 RVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE 162
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 10/213 (4%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+E + +A A LG+ V I+ N+PEW + L + AG + + E
Sbjct: 3 RELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAER 62
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
+ L S+A + + DD+ L K+L+V + L A++ + ++ + L
Sbjct: 63 LAYILEDSEAKVLIT-DDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASA 121
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
P +D ++ ++YTSGT G K VML+H N+ AA + + F L +
Sbjct: 122 EPPAPPVDP-------DDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL-TPGD 173
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
V+ LPL + +I+ + TL K
Sbjct: 174 RVLLLLPLHFDGS-VWEIFGPLLAGGTLVLVPK 205
|
Length = 412 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-26
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 421 KVYKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSII 480
VY+A + I R N ++ISNAQK+QK+ L DFS+P GELGPTMK+KRP V KKY+ I
Sbjct: 531 LVYEAIEEGIKRVNKEAISNAQKVQKWVILEKDFSVPGGELGPTMKLKRPVVAKKYKDEI 590
Query: 481 DKFY 484
DK Y
Sbjct: 591 DKLY 594
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 30/140 (21%)
Query: 121 KQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGV 180
+ A+G R R ++SG AP+ E+ +F +L IPI E +G++E +G TV+ P D ++ V
Sbjct: 209 RWALGGGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATVNRPGDIRIGTV 268
Query: 181 GRTIPGTQTKIVDPDEEGNGEICLKE-------YEANVRTVAKAFLKLGLERYHSVCIIG 233
G+ +PG + +I + +GEI ++ Y+ T A+A + G
Sbjct: 269 GKPLPGVEVRIAE-----DGEILVRGPNVMKGYYKNPEAT-AEALDEDG----------- 311
Query: 234 FNAPEWFYS-DLGAIYAGGF 252
W ++ D+G + GF
Sbjct: 312 -----WLHTGDIGRLDEDGF 326
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 2e-22
Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 8/223 (3%)
Query: 211 VRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 270
+A A LG++ V I+ N+PE+ + L A+ AG A + +P + L
Sbjct: 48 ANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILN 107
Query: 271 TSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDES 330
+ A + + + + V P + ++ D+ I+ + L G ++
Sbjct: 108 DAGAKVLIT-SAEFAALLEAVAEALPVVLVVLLVGDADDRLP-ITLEALAAEGPGPDADA 165
Query: 331 LDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISF 389
+ +A L+YTSGT G K V+L+H N+ NAA I + V+S+
Sbjct: 166 RPVDPDDLAF-----LLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSW 220
Query: 390 LPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQAAIDR 432
LPL HI V + + + TL +
Sbjct: 221 LPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY 263
|
Length = 534 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 4e-21
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 115 LILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD 174
L+ K+ + +GLD+ R++ SGAAP+ L ++ L +PICE +GM+E T++ P D
Sbjct: 263 LVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTLNYPGD 322
Query: 175 FKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 205
++ VG+ IPG + KI E+ GEI ++
Sbjct: 323 RRIGTVGKPIPGVELKI---SED--GEILIR 348
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-20
Identities = 61/206 (29%), Positives = 86/206 (41%), Gaps = 12/206 (5%)
Query: 211 VRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 270
R +A A LGLE + I+ N EW +DL AG + +Y T + E + L
Sbjct: 16 ARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETIRYVLE 75
Query: 271 TSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP-DE 329
SDA V K L+ +KA P+ + WD+L L P
Sbjct: 76 HSDAKALFV--GK-LDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDL--LAATEPLQG 130
Query: 330 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISF 389
E +A T+VYTSGT G K VMLS F A I+ L ++S+
Sbjct: 131 RPLPEPEDLA-----TIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPND-RLLSY 184
Query: 390 LPLSHIAAQTVDIYSVMTVAATLWFA 415
LPL+HIA + + + A ++F
Sbjct: 185 LPLAHIAERVIVEGGSLYSGAEVFFV 210
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 6e-20
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 75 QTTGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLS 134
+ V+R + +A + + L + L+ K++ A+G R R +LS
Sbjct: 303 KAPAVRRKLFRWALKVAYKKISRALLGGGP-LSWLLVADRLVFRKIRDALG-GRIRYALS 360
Query: 135 GAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDP 194
G AP+S EL +F SL IPI E +G++E + +V+ PD F L VG+ +PG + KI D
Sbjct: 361 GGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD- 419
Query: 195 DEEGNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAI 247
+GEI ++ Y N A+AF + G WF + DLG +
Sbjct: 420 ----DGEILVRGPNVMKGYYKNPEATAEAFTEDG----------------WFRTGDLGEL 459
Query: 248 YAGGF 252
G+
Sbjct: 460 DEDGY 464
|
Length = 613 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-19
Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 36/215 (16%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
KE E + LGL+ + I N PEW ++ +Y T EA
Sbjct: 9 KEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGEEA 68
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
+ L ++ +I + K V S++EL ELG+
Sbjct: 69 IEYILNETEISIVFCDAVK-----------------------------VYSFEELEELGK 99
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAA 383
E + T++YTSGT G K VML+H NI A I + +
Sbjct: 100 KNKVPPTPPKPEDL-----ATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPT 154
Query: 384 LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 418
IS+LPL+HI + V+ + + + + +
Sbjct: 155 DVYISYLPLAHIFERVVENV-CLYIGGRIGYYSGD 188
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 1e-17
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 23/151 (15%)
Query: 68 KKVTYKLQT-TGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRW--LILSKVKQAM 124
K + K+ G+KR + N+A Y + + Y W L+ K+K A+
Sbjct: 216 KGILAKVNAKGGLKRTLFNFA--------YNYKLAALRRGHGYASPLWDKLVFKKIKAAL 267
Query: 125 GLDRCRVSLSGAAPISTELKRYFLS--LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGR 182
G R R+ LSG AP+S + + FL L P+ + +G++E T+S P D VG
Sbjct: 268 GG-RVRLMLSGGAPLSPDTQE-FLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHVGP 325
Query: 183 TIPGTQTKIVD-P-------DEEGNGEICLK 205
+P + K+VD P D+ GEIC++
Sbjct: 326 PLPCCEIKLVDVPEMGYFAKDDPPRGEICIR 356
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 4e-16
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 10/209 (4%)
Query: 195 DEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 254
D + E+ + +AK KLGL++ V +I N+ E+ LG + AGG +
Sbjct: 4 DADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVS 63
Query: 255 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVI 314
+ +P+ H L S + + D +L+K+ + + + I+ + PD I
Sbjct: 64 AANPSYTPDELAHQLKISKPKL-IFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRI 122
Query: 315 SWDELMELGRAAPDESLDRVL--ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 372
LG + + A L+Y+SGT G K VMLSH NI N +
Sbjct: 123 EDLLEPRLGAEDEFRPTPLIDGKDDTA-----ALLYSSGTTGLPKGVMLSHKNIIANLSQ 177
Query: 373 IIQYFKLESAALS--VISFLPLSHIAAQT 399
+ K + + V++FLP H T
Sbjct: 178 VQDTLKGNPDSSNDVVLTFLPFYHAYGLT 206
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 4e-15
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 13/207 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---S 261
E + V +A A LG+++ V + +N+ E+ + G A ++ N
Sbjct: 35 AELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIG---AVLHPINIRLK 91
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGKPDKPGVISWDELM 320
PE + L ++ + +V+ + +L + Q P ++ ++ P P E
Sbjct: 92 PEEIAYILNDAEDRVVLVDSE--FVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYE 149
Query: 321 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 380
EL AA D I N+ ++YTSGT G K V+LSH N+ ++ + + KL
Sbjct: 150 ELLAAASDTFDF---PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL- 205
Query: 381 SAALSVISFLPLSHIAAQTVDIYSVMT 407
S + +P+ H+ A + ++M
Sbjct: 206 SRDDVYLVIVPMFHVHAWGLPYLALMA 232
|
Length = 521 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 231 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILK 290
I G N+PEW S G + +Y T A + S+ +I VE+ +KI +
Sbjct: 109 IYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEE----KKISE 164
Query: 291 VKAQCPK----LKAIVQYEG-------KPDKPGVI--SWDELMELGRAAPDESLDRVLET 337
+ CP +K +V + G + + G++ +WDE ++LG + L
Sbjct: 165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYD-----LPI 219
Query: 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSV----ISFLPLS 393
++ CT++YTSGT G K VM+S+++I A +I+ K +AAL+V +S+LPL+
Sbjct: 220 KKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLA 279
Query: 394 HIAAQTVD 401
HI + ++
Sbjct: 280 HIFDRVIE 287
|
Length = 666 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 32/220 (14%)
Query: 209 ANVRT-VAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA--- 264
RT + ++ G+ + V + N PEW D + +Y T P+A
Sbjct: 85 GTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKF 144
Query: 265 -CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK----PDKPG-----VI 314
H V A I V L +L ++ P ++ IV G P P ++
Sbjct: 145 IVNHAEV---AAIFCVPQ--TLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIV 199
Query: 315 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII 374
++ +L+ GR++P E +AT + YTSGT G K V+L+H N+ N A
Sbjct: 200 TYSKLLAQGRSSPQPFRPPKPEDVAT-----ICYTSGTTGTPKGVVLTHGNLIANVAGSS 254
Query: 375 QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414
K + + IS+LPL+H IY + L +
Sbjct: 255 LSTKFYPSDVH-ISYLPLAH-------IYERVNQIVMLHY 286
|
Length = 651 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 7e-13
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 10/179 (5%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E A VR A A LG+ + V I N+P W + LGA+ AG + T + +
Sbjct: 35 ELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEA 94
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDELMEL 322
+ L DA V L + P L+ +V E P + ++ + +
Sbjct: 95 AYILARGDAKALFVLGL-FLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAA 153
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
G + + + + +A +++TSGT G K ML+H + NAA +Y L
Sbjct: 154 G-DPAERAPEVDPDDVAD-----ILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTE 206
|
Length = 513 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 1e-12
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 296 PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355
P+L+ ++ + G PG++++DEL+ LGRA D L T+ ++ + YTSGT G
Sbjct: 155 PELRRVI-FLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213
Query: 356 SKPVMLSHDNITFNA 370
K L+H NI N
Sbjct: 214 PKGATLTHRNILNNG 228
|
Length = 559 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIP 185
R+ LSG AP+ EL F I I E +G++E + T++ PDD K VGR +P
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353
Query: 186 GTQTKIVDPDEEGN-----GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWF 240
G + +IVDPD GEI ++ V K + + F+ W
Sbjct: 354 GVEVRIVDPDGGEVLPGEVGEIWVRGP-----NVMKGYWNRPEATAEA-----FDEDGWL 403
Query: 241 YS-DLGAIYAGGF 252
+ DLG + G+
Sbjct: 404 RTGDLGYVDEDGY 416
|
Length = 534 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 9e-12
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 23/225 (10%)
Query: 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 266
Y+A +R + A G+ I G N PEW + G +Y T A
Sbjct: 84 YDAAIR-IGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVE 142
Query: 267 HCLVTSDANICVVEDDKQLEKILKVKAQCPK-LKAIVQY-------EGKPDKPGV--ISW 316
+ ++ +I V++ K + IL +C LK IV + + + ++ GV SW
Sbjct: 143 FIINHAEVSIAFVQESK-ISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSW 201
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
+E +G SLD L + CT++YTSGT G K V+L++ I
Sbjct: 202 EEFSLMG------SLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHL 255
Query: 377 FKLESAAL----SVISFLPLSHIAAQTVDIYSVMTVAAT-LWFAD 416
K+ S S+LPL+H+ Q ++ Y + A+ W D
Sbjct: 256 LKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGD 300
|
Length = 660 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-11
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 313 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 372
IS+++ + G A ++ + +A L YT GT G K ML+H N+ N
Sbjct: 103 AISFEDALASG-APLPLPVELSPDDLAV-----LQYTGGTTGVPKGAMLTHRNLVANVQQ 156
Query: 373 IIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW----FADKNALKV---YK 424
I + K L ++ LPL HI TV++ + + AT F N LK Y+
Sbjct: 157 IAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYR 216
Query: 425 AT 426
T
Sbjct: 217 FT 218
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 22/113 (19%)
Query: 130 RVSLSGAAPISTELKR-YFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPG 186
R+ + GAAP+ ELKR + +GM+E T+ +P+D+ KL VGR +PG
Sbjct: 118 RLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPG 177
Query: 187 TQTKIVDPDEEGN-------GEICLK------EY----EANVRTVAKAFLKLG 222
+ +IVD D G GEI ++ Y EA + +L G
Sbjct: 178 VEVRIVDED--GRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTG 228
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 6e-11
Identities = 67/244 (27%), Positives = 100/244 (40%), Gaps = 29/244 (11%)
Query: 210 NVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 269
+ R AKA LGL + V ++ N E+ LG + AGG +G T
Sbjct: 64 DTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQA 123
Query: 270 VTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDE 329
+ A + +V +D K+ + L IV G+ G ++W EL+E A D
Sbjct: 124 EAAGAKL-IVTNDTNYGKVKGLG-----LPVIVL--GEEKIEGAVNWKELLEAADRAGDT 175
Query: 330 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES-AALSVIS 388
S E I + C L ++SGT G SK VML+H N+ N + E + +
Sbjct: 176 S---DNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLG 232
Query: 389 FLPLSHIAAQTVDIYSVMTVA-ATLWFADKNALKVYKATQAAIDRANLKSISNAQKIQKF 447
+P H IY + + ATL +N KV + R L++ NA Q+
Sbjct: 233 LIPFFH-------IYGITGICCATL----RNKGKV-----VVMSRFELRTFLNALITQEV 276
Query: 448 EFLP 451
F P
Sbjct: 277 SFAP 280
|
Length = 546 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 7e-11
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 27/235 (11%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
KE V + A G E V I G N P+W + +Y T P A
Sbjct: 80 KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPK-LKAIVQY----EGKPDKPGVI----- 314
+ + ++ + V+D K+++++L+ + K LKAIV + E + DK I
Sbjct: 140 VDYIVDHAEIDFVFVQD-KKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY 198
Query: 315 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII 374
SW + + +G+ P E+ + CT++YTSGT G K V+L+H+ + A +
Sbjct: 199 SWIDFLHMGKENPSETN-----PPKPLDICTIMYTSGTSGDPKGVVLTHEAV---ATFVR 250
Query: 375 ------QYFKLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWF-ADKNALK 421
+ F+ + V +SFLPL+HI + ++ Y A+ ++ D NAL+
Sbjct: 251 GVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALR 305
|
Length = 660 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 187
RV SGAAP+S EL+ + I + +GM+E A T++ P D K VGR +P
Sbjct: 266 RVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNV 325
Query: 188 QTKIVDPDEEGN------GEICLK 205
+ KIVD D + GE+C+K
Sbjct: 326 EAKIVDEDGGKSLGPNERGELCVK 349
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 48/217 (22%), Positives = 77/217 (35%), Gaps = 33/217 (15%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E E VR +A G + V ++ N+ E+ L + AG +P
Sbjct: 37 ELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPA-- 94
Query: 266 LHCLVTSDANICVVEDDKQLEK-----ILKVKAQCPKLKAIVQYEGKPDKPGVISWDELM 320
E KQ++ + KL ++ V+ D
Sbjct: 95 --------------EIAKQVKDSGAKLAITTSELAEKLASLAL-------EPVVLLDSAD 133
Query: 321 ELGRAAPDESLDRVLET----IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
+ A D E I ++ L Y+SGT G SK VML+H N+ N A ++
Sbjct: 134 DGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAG 193
Query: 377 FKLESAALSVI-SFLPLSHIAAQTVDIYSVMTVAATL 412
V LP+ HI TV + +++ + AT+
Sbjct: 194 EGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATV 230
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 15/191 (7%)
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268
V +A LGL R V I E + GA AGG + E H
Sbjct: 33 ERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHI 92
Query: 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY----EGKPDKPG--VISWDELMEL 322
L + + +V ++L+ + C L+ ++ PG SW +L+ L
Sbjct: 93 LADCNVRL-LVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPASWPKLLAL 151
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 382
G A P + +A ++YTSG+ G K V+LSH N+ A + Y +
Sbjct: 152 GDADP--PHPVIDSDMAA-----ILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPD 204
Query: 383 ALSVISFLPLS 393
+++ LPLS
Sbjct: 205 D-RLLAVLPLS 214
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 421 KVYKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFV 472
+V + ++ AN ++ ++I+KF LP +FSI GEL PTMK++R V
Sbjct: 406 EVRALIRKEVEEAN-ARLARVEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 293 AQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGT 352
+ P+L+ +V PG ++W EL G E+L ++ ++ + YTSGT
Sbjct: 154 ERLPELRGVVSL-APAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGT 212
Query: 353 EGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 412
G K LSH NI N + + L + +PL H + MTV A L
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVP-VPLYHCFGMVLANLGCMTVGACL 271
|
Length = 558 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-10
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 403
++YTSGT G K V+L+H + F A + L + +++ LPL HI AQ +Y
Sbjct: 84 AAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDV-LLTPLPLFHINAQAYSVY 142
Query: 404 SVMTVAATLWFADK 417
+ + V ATL +
Sbjct: 143 AALLVGATLVLLPR 156
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 19/220 (8%)
Query: 206 EYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E + VA+A L GL+ +V ++ N P + + LG G A + T +
Sbjct: 8 EVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSGS 67
Query: 265 CLHCLVTSDANICVVEDDKQ--LEKILKVKAQCPKLKAI---VQYEGKPDKP-GVISWDE 318
LHC A + V + + +E+IL P L+A+ V Y P GVIS
Sbjct: 68 LLHCFRCCGARVLVADPELLEAVEEIL------PALRAMGVRVFYLSHTSPPEGVISLLA 121
Query: 319 LMELGRAAPDESLDRVLETIAT-NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
++ AA DE + L + + +YTSGT G K +SH + +
Sbjct: 122 KVD---AASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVL--QCSGMLSL 176
Query: 378 KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
+A V + LPL H + + I + + ATL K
Sbjct: 177 CGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPK 216
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 62/218 (28%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
I E EA T A A L+ G + SV + N P+ + GA+ AG + +
Sbjct: 46 PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLD 105
Query: 261 SPEACLHCLVTSDANICVVEDDKQL----EKILKVKAQCPKL---------KAIVQYEGK 307
A H L S A + + D L K L+ K +L K
Sbjct: 106 GERALSHKLSDSGARLLITSDLAALLPMALKFLE-KGLLDRLIVCEDDNWGKVGTPQAPI 164
Query: 308 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
P P ++++ + ++ G AAP E + ++ L YT GT G K ML+H N+T
Sbjct: 165 PADPRIVTYADFVK-GAAAPAE-----WPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLT 218
Query: 368 FNAACIIQYFKLESAALS-----VISFLPLSHIAAQTV 400
+A I + S A VI LPL HI A TV
Sbjct: 219 -SAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTV 255
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 126 LDRCRVSLSGAAPISTEL-KRYFLSLDIP-ICEVFGMSECAGAHTVSAPDDF---KLDGV 180
L R +SG AP+ EL +R + I +GM+E +G T ++ DD + V
Sbjct: 116 LSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTV 175
Query: 181 GRTIPGTQTKIVDPDEEGN-------GEICLKEY 207
GR +PG + KIVDPD G GEIC++ Y
Sbjct: 176 GRPLPGVEVKIVDPD--GGEVPPGEVGEICVRGY 207
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 187
R+ +SG AP+ E+ F P+ E +G++E + TV+ D + G +G +PGT
Sbjct: 245 RLCISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGT 304
Query: 188 QTKIVDPDEEGN-------GEICLK 205
+ KIVD EGN GE+ ++
Sbjct: 305 EVKIVDD--EGNELPPGEVGELVVR 327
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 186 GTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245
G + + D G + E + V A +LG+ER + V +I + PE+ + G
Sbjct: 19 GDKIALYYDD----GSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWG 74
Query: 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 305
AI G + T +P+ + L S A + V+ ++ E + + P L+ ++
Sbjct: 75 AIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEEL-WEVLKPALQKDPHLRHVIVVG 133
Query: 306 GKPDKPGVISWDELMELGRAAPDESLDRVLETIAT--NECCTLVYTSGTEGASKPVMLSH 363
G PG +S+ +L + AA + LE AT ++ +Y+SG+ G K V+ H
Sbjct: 134 GAG--PGALSYAQL--IATAAEE------LEAAATSADDMAFWLYSSGSTGRPKGVVHLH 183
Query: 364 DNIT 367
++
Sbjct: 184 HDML 187
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDG--VG 181
L R+ LSG P+ EL R +P+ +G +E T + P D ++ +G
Sbjct: 246 LSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIG 305
Query: 182 RTIPGTQTKIVDPDEE-----GNGEICL------KEYEAN-VRTVAKAFLKLGLERYHS 228
R +PG + K++D + E GE+C+ + Y + T A+ F++ G Y +
Sbjct: 306 RPLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELT-AERFVEDGWGMYRT 363
|
Length = 412 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 126 LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRT 183
L R L G API L IP+ +GM+E A PDDF KL VG+
Sbjct: 188 LSSLRAVLLGGAPIPPSLLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKP 247
Query: 184 IPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS- 242
+PG + +IV+P +GEI ++ ++ +L + + WF++
Sbjct: 248 LPGRELRIVNP---QDGEILVRG-----PSLFLGYLP-QGGLTPPL-----DEDGWFHTG 293
Query: 243 DLGAIYAGGF 252
DLG + A G+
Sbjct: 294 DLGYLDAEGY 303
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 187
R +L GAAP+ E+ R F + + I E +G++E +V+ PD + G VG +P
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 188 QTKIVDPDEEGN----------GEICLK 205
+ ++V D+ G G +C+
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIA 423
|
Length = 632 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 115 LILSKVKQAMGLDRCRVSL----SGAAPISTELKRYFLS--LDIPICEVFGMSE-CAGAH 167
++L+ VK + SL SGAAP+ EL F + + + + +GM+E
Sbjct: 259 IVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTT 318
Query: 168 TVSAP-DDFKLDGVGRTIPGTQTKIVDPD-----EEGN-GEICLK 205
P D K VGR +P + KIVDP+ GE+ ++
Sbjct: 319 MCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVR 363
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 25/202 (12%)
Query: 215 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 274
A + LG + V I EW + G +Y + EA H L ++
Sbjct: 120 ASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV 179
Query: 275 N--ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG----------VISWDELMEL 322
IC D KQL+K++ + +Q +K ++ + + V S+ E+ +L
Sbjct: 180 TTVIC---DSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKL 236
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLES 381
G+ P + IA ++YTSG+ G K VM++H NI A ++ KL
Sbjct: 237 GKENPVDPDLPSPNDIAV-----IMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGK 291
Query: 382 AALSVISFLPLSHI---AAQTV 400
+ +++LPL+HI AA++V
Sbjct: 292 NDV-YLAYLPLAHILELAAESV 312
|
Length = 696 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 114 WLILSKVKQAMGLD--RCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVS 170
W +L K +A +D R+ + G A + L R F I + + +GM+E + +V
Sbjct: 266 WQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVL 325
Query: 171 APDDFKLDG------VGRTIPGTQTKIVDPDEE-----GN--GEICLK 205
P+D GR +PG + +IVD D + G GEI ++
Sbjct: 326 PPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVR 373
|
Length = 521 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGT 187
R +L+GAAP+ E+ R F ++ +P+ E +GM+E G ++ + VG +P T
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYT 184
Query: 188 QTKIVDPDEEGN-GEIC 203
+ ++ D G G C
Sbjct: 185 RVRVAKLDAGGALGRDC 201
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 208 EAN--VRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E N A G+ + V ++ N PE+ + LG G + T A
Sbjct: 67 ELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA-VVALLNTQQRGAV 125
Query: 266 L-HCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L H L DA +V ++ +E + +A + G +++L
Sbjct: 126 LAHSLNLVDAKHLIVGEE-LVEAFEEARAD-LARPPRLWVAGGDTLDDPEGYEDLAAAAA 183
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
AP + + + +YTSGT G K ++SH
Sbjct: 184 GAPTTNPA-SRSGVTAKDTAFYIYTSGTTGLPKAAVMSH 221
|
Length = 600 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 187
R+ +SG P+S EL F PI E +G++E + + + + K G VGR +PG
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178
Query: 188 QTKIVDPDEEGN-----GEICLK 205
+ ++VD + + GE+ ++
Sbjct: 179 EVRVVDEEGKPLPPGEVGELVVR 201
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA 396
++YTSGT G K VML+H N+ NA + L + +++ PL H A
Sbjct: 4 ALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLA-APLYHAA 55
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTN--- 260
++ VR +A A LG++ V + +N + L +A G A ++T N
Sbjct: 29 ADFYRRVRRLANALESLGVKPGDRVATLAWNT----HRHLELYFAVPGMGAVLHTLNPRL 84
Query: 261 SPEACLHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQY----EGKPDKPGVIS 315
SPE + + ++ + V+DD +L + + P +KA+V Y + P V +
Sbjct: 85 SPEQIAYIINHAEDKVIFVDDD--FLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYA 142
Query: 316 WDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN--AACI 373
++EL+E +P+ + E N L YTSGT G K V+ SH ++ + A+ +
Sbjct: 143 YEELLE--EESPEYEWPELDE----NTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASAL 196
Query: 374 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 407
L + +V+ +P+ H+ A + + M
Sbjct: 197 PDSLGLSESD-TVLPVVPMFHVNAWGLPYAATMV 229
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 342 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
+ ++YTSG+ G K VMLSH N+T A I QY +L +++ LP S
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDR-ILAVLPFSF 54
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 52/208 (25%), Positives = 76/208 (36%), Gaps = 20/208 (9%)
Query: 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 257
G+ + + + +AF LGL +V ++ N PE + +GA G
Sbjct: 34 GDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMA-IGAAQLAGLR---R 89
Query: 258 TTNSPEACL--HCLVTSDANI--CVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGV 313
T P L H V DA I +V+ +E+ L + A+ P LK ++ PD
Sbjct: 90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVD- 148
Query: 314 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 373
L+ L + L YT GT G K VM +H +I A
Sbjct: 149 -----LLAAAAKFGPAPLVAA---ALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQ-- 198
Query: 374 IQYFKLE-SAALSVISFLPLSHIAAQTV 400
IQ + E A + PLSH
Sbjct: 199 IQLAEWEWPADPRFLMCTPLSHAGGAFF 226
|
Length = 524 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 421 KVYKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSII 480
K+ K +++ N + ++I+KF LP +F+ GEL PT+K+KR ++ +Y+ I
Sbjct: 545 KLLKLILPRVNKGNKRL-FGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEI 603
Query: 481 DKFY 484
+ Y
Sbjct: 604 EAVY 607
|
Length = 613 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 403
+ YTSGT G K ML+H N+ N I + L + + +PL H+ + +
Sbjct: 5 ALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL-TEGDRTLVPVPLFHVFGLVLGVL 63
Query: 404 SVMTVAATLWFADK 417
+ +T ATL +K
Sbjct: 64 ASLTAGATLVLMEK 77
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 30/204 (14%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA---AGM------ 256
E +A V VA A L LGL++ V +G N SD A A AG
Sbjct: 41 ELDAAVNRVAAALLDLGLKKGDRVAALGHN------SD--AYALLWLACARAGAVHVPVN 92
Query: 257 YTTNSPEACLHCLVTSDANICVVEDD--KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVI 314
+ E + L S A +V+ E L L + G+ G +
Sbjct: 93 FMLTGEELA-YILDHSGARAFLVDPALAPTAEAALA-LLPVDTLILSLVLGGREAPGGWL 150
Query: 315 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACI 373
+ + E G A + +A ++ ++YTSGTE K ML+H + +CI
Sbjct: 151 DFADWAEAGSVAEPD------VELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCI 204
Query: 374 IQYFKLESAALSVISFLPLSHIAA 397
+ + + + + + LPL H A
Sbjct: 205 VA-GDMSADDIPLHA-LPLYHCAQ 226
|
Length = 523 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHI 395
++YTSGT G K V+L+H N+ NA +++ ++ +A+ ++ LPL H+
Sbjct: 93 IIYTSGTTGRPKGVVLTHGNLAANARALVEAWRW-TASDVLLHALPLHHV 141
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R+ ++GA + + F I I E +G +EC+ +V+ P K VGR +PG +
Sbjct: 262 RLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIE 321
Query: 189 TKIVDPD 195
+IV P+
Sbjct: 322 VRIVSPE 328
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSEC--AGAHTVSAPDDFKLDGVGRTIPG 186
RV L G AP+ EL R L + +GM+E T PDD + GR +PG
Sbjct: 211 RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPG 270
Query: 187 TQTKIVDPDEE-----GNGEICLK 205
+ +IVD D GE+ ++
Sbjct: 271 VEVRIVDDDGNDVPPGEEGELQVR 294
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 42/187 (22%), Positives = 65/187 (34%), Gaps = 10/187 (5%)
Query: 186 GTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245
+T +V D +E R +A A KLG+ + V ++ N P + G
Sbjct: 18 PDRTAVVYGDRR----YTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFG 73
Query: 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 305
AG + T + L S+A + V D + L + A K I+ E
Sbjct: 74 VPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFV-DQEFLSLAEEALALLST-KEIIDTE 131
Query: 306 GKPDKPG--VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
P + +L + L + +L YTSGT G K V+ +H
Sbjct: 132 IIVISPAAEDSEEGDYEDLLAGGDPDPLPIPP--DDEWDPISLNYTSGTTGNPKGVVYTH 189
Query: 364 DNITFNA 370
NA
Sbjct: 190 RGAYLNA 196
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 14/175 (8%)
Query: 81 RWIANYAKSTSLQHYMAYLEKNVSEPYTY-RLVRWLILSKVKQAMGLDRCRVSLSGAAPI 139
RW+ A + + LE +E T+ LV + + + + R L G + I
Sbjct: 172 RWLIEGATLRIVDKFNQLLEMIANERVTHISLVPTQLNRLLDEGGHNENLRKILLGGSAI 231
Query: 140 STELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFK-LDGVGRTIPGTQTKIVDPDEEG 198
L +PI +GM+E T + P+ VGR + G + KI ++EG
Sbjct: 232 PAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEG 291
Query: 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
+GEI +K + K +L G F WF + D+G + GF
Sbjct: 292 HGEIMVKG-----ANLMKGYLYQGELTP------AFEQQGWFNTGDIGELDGEGF 335
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 47/209 (22%), Positives = 73/209 (34%), Gaps = 20/209 (9%)
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268
A+V A LG+ V + N PE ++ G A G A + PE
Sbjct: 66 ADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG-EAAGIANPINPLLEPEQIAEL 124
Query: 269 LVTSDANICVV---EDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L + A + V + +K+ +V A P+L+ +V+ + PG + +
Sbjct: 125 LRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRK 184
Query: 325 AA-------------PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 371
A P + L I ++ +T GT G K +H N NA
Sbjct: 185 AHARILDFDAELARQPGDRLFSG-RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAW 243
Query: 372 CIIQYFKLESAALSVISFLPLSHIAAQTV 400
L +V LPL H+ A V
Sbjct: 244 LGALLLGLGPGD-TVFCGLPLFHVNALLV 271
|
Length = 632 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 115 LILSKVKQAMGLDRCRVSLSGAAPISTELKRYF-LSLDIPICEVFGMSE-CAGAHTVSAP 172
L+ K++ +G R R LSG AP+S + +R+ + L PI + +G++E CAGA T S
Sbjct: 409 LVFKKIRAVLG-GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGA-TFSEW 466
Query: 173 DDFKLDGVGRTIPGTQTKIVDPDEEG 198
DD + VG +P K+V +E G
Sbjct: 467 DDTSVGRVGPPLPCCYVKLVSWEEGG 492
|
Length = 696 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
YTSG+ GA K VM++H N+ N I + F L+ +S+LPL H
Sbjct: 155 YTSGSTGAPKGVMVTHGNLLANLRAIARAFGLD-PDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 14/196 (7%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+E + V +A A + G+ V I+ N E+ S L A G A + +P
Sbjct: 46 RELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPE 105
Query: 265 CLHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGKPDKPGVISWDELMELG 323
+ A++ V E L + V+ P L +V G D V+ +++L+
Sbjct: 106 IAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSDD-SVLGYEDLL--- 159
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
A + V I + ++YTSGT G K +L+H N+T A ++ +
Sbjct: 160 -AEAGPAHAPV--DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADIN- 215
Query: 384 LSVISFL--PLSHIAA 397
S + F+ PL HIA
Sbjct: 216 -SDVGFVGVPLFHIAG 230
|
Length = 542 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 58/211 (27%), Positives = 84/211 (39%), Gaps = 50/211 (23%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
+ E R VA KLG+ + V ++ N PE+ + LGA G TT +P
Sbjct: 55 DVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVT----TTANP--- 107
Query: 266 LHCLVTSDANICVVEDDKQLEK-----ILKVKAQCPKLKAIVQYEGKP----DKP--GVI 314
T A I KQ + I+ KLK + + +G D P G +
Sbjct: 108 ---FYTP-AEIA-----KQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCL 158
Query: 315 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN-ITFNAACI 373
+ EL + A + L V I+ ++ L Y+SGT G K VML+H +T +
Sbjct: 159 HFSELTQ----ADENELPEV--EISPDDVVALPYSSGTTGLPKGVMLTHKGLVT----SV 208
Query: 374 IQ---------YFKLESAALSVISFLPLSHI 395
Q YF + L V LP+ HI
Sbjct: 209 AQQVDGENPNLYFHSDDVILCV---LPMFHI 236
|
Length = 537 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 215 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 274
A +LG+E+ V I PE +++ LGA+ G ++ EA L S+A
Sbjct: 87 ANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEA 146
Query: 275 NICVVEDDKQLEKILKVKAQCPKLKAIVQY-EGKPDKPGVISWDELMELGRAAPDESLDR 333
+ ++ LE+ K P LK ++ E + PG + ++ LME A DE
Sbjct: 147 KV-LITTPALLER--KPADDLPSLKHVLLVGEDVEEGPGTLDFNALME---QASDE---- 196
Query: 334 VLETIATN--ECCTLVYTSGTEGASKPVMLSHD 364
+ T+ + L YTSG+ G K V+ H+
Sbjct: 197 -FDIEWTDREDGAILHYTSGSTGKPKGVLHVHN 228
|
Length = 570 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 259 TNSPEACLHCLVTSDANI-CVVEDDKQLEKILKVK---AQCPKLKAIVQYEGKPDKPGVI 314
T S A + A I V+ K LEK LK K + P+ ++ E K
Sbjct: 698 TASEAALKSAI--EQAQIKTVITSRKFLEK-LKNKGFDLELPENVKVIYLEDLKAKIS-- 752
Query: 315 SWDELMELGRA--APDESLDR-VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 371
D+L L A P L R T ++ T++++SG+EG K VMLSH NI N
Sbjct: 753 KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIE 812
Query: 372 CIIQYFKLESAALSVISFLPLSH 394
I F L + ++S LP H
Sbjct: 813 QISDVFNLRNDD-VILSSLPFFH 834
|
Length = 1146 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 119 KVKQAMGLDRCRVSLSGAAPISTELKRYF-LSLDIPICEVFGMSECAGAHTVSAPD---- 173
K+ M R+ ++GA + E+ F I I E +G +E + +V+ PD
Sbjct: 891 KLHPLM-FASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAA 949
Query: 174 ------DFKLDGVGRTIPGTQTKIVDPD 195
K VG +PG +IVDP+
Sbjct: 950 DFKRQTGSKEGSVGMPLPGVAVRIVDPE 977
|
Length = 1146 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 61/227 (26%), Positives = 98/227 (43%), Gaps = 32/227 (14%)
Query: 202 ICLKEYEANVRTVAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 260
I +E + V A L +L L++ V ++ N ++ + G + AG +
Sbjct: 51 ITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLY 110
Query: 261 SPEACLHCLVTSDANICVVEDD--KQLEKIL---KVKA----------QCPK---LKAIV 302
+P H L+ S A++ VV D+ +++++ VK PK + +V
Sbjct: 111 TPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVV 170
Query: 303 QYEGK--PDK--PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358
+Y K P+ G I + E + LGR +L I ++ L YT GT G +K
Sbjct: 171 KYVKKLVPEYRINGAIRFREALALGRKHSMPTLQ-----IEPDDIAFLQYTGGTTGVAKG 225
Query: 359 VMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVD 401
ML+H N+ N Q+ KLE VI+ LPL HI A T +
Sbjct: 226 AMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTAN 272
|
Length = 560 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 435 LKSISNAQKIQKFEFL------PADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFY 484
L I ++ FE + P F+ G L PT K+KRP + K+Y+ ID+ Y
Sbjct: 484 LNEIGKENGLKGFEIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPIC-EVFGMSECAGAHTVSAPDDFKLDG---VGRTI 184
R++++GAA + L F S L + I +G+SE +G T + DD + +G I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343
Query: 185 PGTQTKIVDPDEEGN-----GEICLKEYEANV 211
G + KIV+ E GE+ ++ NV
Sbjct: 344 AGVENKIVNELGEEVPVGEVGELLVRGP--NV 373
|
Length = 513 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 73 KLQTTG-VKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRV 131
K+ + G +++ + ++A + L L K + + + L+ K+K+ +G R R+
Sbjct: 333 KISSGGMLRKKLFDFAYNYKL----GNLRKGLKQEEASPRLDRLVFDKIKEGLG-GRVRL 387
Query: 132 SLSGAAPISTELKRYFLSLDIPICEV----FGMSE-CAGAHTVSAPDDFKLDG-VGRTIP 185
LSGAAP+ ++ + L + C V +G++E C G T S + F + G VG +
Sbjct: 388 LLSGAAPLPRHVEEF---LRVTSCSVLSQGYGLTESCGGCFT-SIANVFSMVGTVGVPMT 443
Query: 186 GTQTKIVDPDEEG--------NGEICLK 205
+ ++ E G GEICL+
Sbjct: 444 TIEARLESVPEMGYDALSDVPRGEICLR 471
|
Length = 660 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 319 LMELGRAAPD--ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
L+E AAPD E++ R + +A ++YTSGT G SK MLSH N+ NA ++ Y
Sbjct: 137 LLEAAAAAPDDFETVPRGADDLAA-----ILYTSGTTGRSKGAMLSHGNLLSNALTLVDY 191
|
Length = 504 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 60/264 (22%), Positives = 96/264 (36%), Gaps = 41/264 (15%)
Query: 196 EEGNGE---ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 252
G GE + E VR +A+A L LGL + I+ N+ E L A+YAG
Sbjct: 17 RRGGGEWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVP 76
Query: 253 AAGMYTTNSPEACLHCLVTSD-------ANIC-----VVEDDKQLEKILKVKAQCPKLKA 300
A + S L++ D ++ ED + L A
Sbjct: 77 VAPVSPAYS-------LLSKDFAKLRHIFDLLTPGAVFAEDGAAFARAL---AALGLAGV 126
Query: 301 IVQYEGKPDKPGVISWDELMEL-GRAAPDESLDRVL-ETIATNECCTLVYTSGTEGASKP 358
V I++ L+ AA D + V +T+A ++TSG+ G K
Sbjct: 127 PVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAK-----YLFTSGSTGLPKA 181
Query: 359 VMLSHDNITFNAACIIQYFKLESAALSVI-SFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
V+ +H + N A I Q + + V+ +LP +H + V+ TL+ D
Sbjct: 182 VINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDG 241
Query: 418 NALKVYKATQAAIDR--ANLKSIS 439
K + NL+ +S
Sbjct: 242 ------KPVPGLFEETLRNLREVS 259
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370
P + + + + GR + + L+ IA L YT GT G +K ML+H N+ N
Sbjct: 182 PQAVPFKQALRQGRGLSLKPVPVGLDDIAV-----LQYTGGTTGLAKGAMLTHGNLVANM 236
Query: 371 ----ACIIQYFK-----LESAALSVISFLPLSHIAAQTVDIYSVM 406
AC+ Q ++ +I+ LPL HI A T + +M
Sbjct: 237 LQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMM 281
|
Length = 562 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 21/106 (19%)
Query: 115 LILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPIC------EVFGMSECAGAHT 168
L+ +K+K +G R R SGA+P+S ++ FL IC E +GM+E + +
Sbjct: 365 LVFNKIKAKLG-GRVRFMSSGASPLSPDVME-FLR----ICFGGRVLEGYGMTETSCVIS 418
Query: 169 VSAPDDFKLDGVGRTIPGTQTKIVDPDEEG---------NGEICLK 205
D VG P + K+VD E GEIC++
Sbjct: 419 GMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVR 464
|
Length = 651 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 38/158 (24%)
Query: 273 DANICVVEDDKQ-LEKILKVKAQCPKL-KAIVQY----EGKPDKPGVISWDELMELGRAA 326
D ++ +E DK+ LEKI +K + KL +I+ + + K + + D
Sbjct: 252 DISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDP-------- 303
Query: 327 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-----CIIQYFKLES 381
+ ++VYTSGT G K VMLS+ N+ I + + ++
Sbjct: 304 --------------DFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKT 349
Query: 382 AALSVISFLPLSHIAAQTVDIYSVM-TVAATLWFADKN 418
+S+LP+SHI + + S M +W D N
Sbjct: 350 H----LSYLPISHIYERVIAYLSFMLGGTINIWSKDIN 383
|
Length = 746 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 308 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
GV++W E + G A P + ++ L YTSGT G K M +H +
Sbjct: 164 LAPGGVVAWKEALAAGLAPPPHTAGP-------DDLAVLPYTSGTTGVPKGCMHTHRTVM 216
Query: 368 FNAACIIQYFKL--ESAALSVISFLPLSHI 395
NA + + ES L+V LPL H+
Sbjct: 217 ANAVGSVLWSNSTPESVVLAV---LPLFHV 243
|
Length = 546 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 122 QAMGLDRCRVSLSGA-APISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGV 180
+ + +++LSG A +R+ ICE +GM+E + +V+ ++ +
Sbjct: 321 RKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTI 380
Query: 181 GRTIPGTQTKIVDPDEEGN-------GEICLK 205
G +P T K++D D GN GE+C+K
Sbjct: 381 GIPVPSTLCKVIDDD--GNELPLGEVGELCVK 410
|
Length = 562 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 90 TSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS 149
++ + ++K S L L+ +KVKQ +G R+ LSGAAP+++ ++ FL
Sbjct: 350 SAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLG-GNVRIILSGAAPLASHVES-FLR 407
Query: 150 LDIPICEV---FGMSE-CAGAHTVSAPDDFKLDG-VGRTIPGTQTKIVDPDE-------- 196
+ + C V +G++E CAG VS PD+ + G VG +P ++ E
Sbjct: 408 V-VACCHVLQGYGLTESCAGTF-VSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS 465
Query: 197 EGNGEICLK 205
GEIC++
Sbjct: 466 TPRGEICIR 474
|
Length = 666 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 403
++YTSGT G K V+LSH N+ NA + Q L + ++S LPL H+ +
Sbjct: 3 AFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDV-LLSVLPLFHVVGGGSGLL 61
Query: 404 SVMTVAATLWFADK 417
+ T+ +
Sbjct: 62 GALLAGGTVVLYEG 75
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 285 LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE-------- 336
++ IL ++ Q P+L+ IV DK L A SL +++
Sbjct: 137 VDLILPLQNQLPQLQQIVGV----DK-----------LAPATSSLSLSQIIADYEPLTTA 181
Query: 337 -TIATNECCTLVYTSGTEGASKPVMLSHDNITF 368
T +E +++TSGTEG K VML+H+NI
Sbjct: 182 ITTHGDELAAVLFTSGTEGLPKGVMLTHNNILA 214
|
Length = 547 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA 396
++ L+YTSGT G K VM +H+ + ++ L + ++ PL+HI
Sbjct: 93 DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPS-PLAHIT 147
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 307 KPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 366
K P IS+ + GR + V + + L YT GT G +K ML+H N+
Sbjct: 177 KYHLPDAISFRSALHKGR-----RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNM 231
Query: 367 TFN--AACIIQYFKLESAALSVISFLPLSHIAAQTVD 401
N A L V++ LPL HI A TV+
Sbjct: 232 LANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVN 268
|
Length = 560 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 404
+++TSGT G K V L+H N+ +A I + KL + + ++ +PL HI V + +
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL-TPSDRCLNVMPLFHIHGLIVSLLA 64
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 23/170 (13%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---SP 262
E E +A + GL V I N E+ + LGA A A N
Sbjct: 33 ELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR---AVPVNVNYRYVE 89
Query: 263 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDEL 319
+ + L SDA + +V + + ++ +V + PKL+ +V E G PG + +++
Sbjct: 90 DELRYLLDDSDA-VALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDA 148
Query: 320 MELGRAAPD---ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 366
+ G D S D + L+YT GT G K VM ++I
Sbjct: 149 LAAGSPERDFGERSPDDLY----------LLYTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 17/204 (8%)
Query: 215 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 274
A F LG+ + V + N PE+ + G G + E L S A
Sbjct: 51 ANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQA 110
Query: 275 NICVVEDD--KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD 332
++ V +I + A + + P GV S+ +L +
Sbjct: 111 SLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVSSFTQL--KAQQPATLCYA 167
Query: 333 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS----VIS 388
L T T E +++TSGT K V+++H N+ F Y+ AL ++
Sbjct: 168 PPLSTDDTAE---ILFTSGTTSRPKGVVITHYNLRFAG-----YYSAWQCALRDDDVYLT 219
Query: 389 FLPLSHIAAQTVDIYSVMTVAATL 412
+P HI Q + + AT
Sbjct: 220 VMPAFHIDCQCTAAMAAFSAGATF 243
|
Length = 517 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDG------VGR 182
R+ +SG+A + + + + E +GM+E A +S P LDG VG
Sbjct: 209 RLFVSGSAALPVPVLERWEERTGHTLLERYGMTETGMA--LSNP----LDGERRPGTVGL 262
Query: 183 TIPGTQTKIVDPD------EEGNGEICLK------EYEANVRTVAKAF 218
+PG + +IVD D GEI ++ EY A+AF
Sbjct: 263 PLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAF 310
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
Query: 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG---MY 257
+I + V+ A KLG+E+ V I+ N P+ G + AGG +Y
Sbjct: 49 DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLY 108
Query: 258 TTNSPEACLH--------CLVTSDANICVVEDDKQLEKIL--KVKAQCPKLKAIVQYEGK 307
T E LH CL + V+ ++E ++ ++ P K ++ +
Sbjct: 109 TERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQ 168
Query: 308 PDKPGVI---SWDELMELGRAAPDESLDRVLETIA--TNECCTLVYTSGTEGASKPVMLS 362
+ ++ S E + L + E ++ +E N+ L YT GT G K VML+
Sbjct: 169 KKQSNLVVKVSESETIHLWNSVEKE-VNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLT 227
Query: 363 HDNITFNAACIIQY-FKLESAALSVISFLPLSHIAAQT 399
H N+ N +Q+ + + V+ LP H+ T
Sbjct: 228 HKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMT 265
|
Length = 563 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268
ANV + A GL+R V +I PEW+ ++ I G + + L+
Sbjct: 55 ANVLSGA-----CGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYR 109
Query: 269 LVTSDANICVVEDDKQLEKILKVKAQCPKL--KAIVQYEGKPDKPGVISWDELMELGRAA 326
L S A C+V D+ + + ++CP L K +V + W EL + A
Sbjct: 110 LQASKAK-CIVTSDELAPAVDSIASECPSLKTKLLVSEHSRD------GWLNFKELLKEA 162
Query: 327 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
E ++T + E + +TSGT G K SH
Sbjct: 163 STEH--TCVKT-KSQEPMAIYFTSGTTGFPKMAEHSH 196
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 21/189 (11%)
Query: 186 GTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245
G +T +D + E EA VR + A +LG++R V ++ + ++ + LG
Sbjct: 19 GGKTAFIDD----ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG 74
Query: 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 305
AI AG + T + + + L S A + V + L I + P L+ V
Sbjct: 75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGE-LLPVIKAALGKSPHLEHRVVVG 133
Query: 306 GKPDKPGVISWDELM----ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVML 361
G + EL+ E + A ++ ++ +Y+SG+ G K V+
Sbjct: 134 RPE--AGEVQLAELLATESEQFKPAATQA----------DDPAFWLYSSGSTGMPKGVVH 181
Query: 362 SHDNITFNA 370
+H N + A
Sbjct: 182 THSNPYWTA 190
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
RV S P++ E +F S L + I +++G +E P K G +PG
Sbjct: 293 RVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPGYA 351
Query: 189 TKIVDPDEE----GNGEICLK 205
+ VD + G GE+ ++
Sbjct: 352 VRRVDDEGNPVPPGVGELVVR 372
|
Length = 528 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 9/173 (5%)
Query: 191 IVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 250
I D ++ E+ + V +A A LG + V I N+PE + L G
Sbjct: 30 IFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIG 89
Query: 251 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK 310
A + S EA + ++ DD K A A++ +
Sbjct: 90 AIPAVVSPGLSAEAVADRIADLGPK-VLIADDGTFRNG-KEIALLEDADAVLSSVVVVPR 147
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
G+ + + + E L ++ L+YTSGT G K ++ SH
Sbjct: 148 LGLWYDEAVEKASEKFEFEPLPA-------DDPLFLLYTSGTTGKPKGIVHSH 193
|
Length = 528 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
+++TSG+EG K V+LSH N+ N I L + ++ LPL H
Sbjct: 149 VILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTED-VLLGALPLFH 197
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370
P + +++ + G P + + +A L YT GT G +K ML+H N+ N
Sbjct: 182 PQAVKFNDALAKGAGQPVTEANPQADDVAV-----LQYTGGTTGVAKGAMLTHRNLVANM 236
Query: 371 ACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVM 406
L +I+ LPL HI A T ++M
Sbjct: 237 LQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMM 274
|
Length = 562 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405
+ YTSGT G K M +H + AA + L ++ + +FLPL H+A + +
Sbjct: 89 IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLL-AFLPLFHVAGMQGSMNAP 147
Query: 406 MTVAATL 412
+ ATL
Sbjct: 148 IYTGATL 154
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370
PG + W+ L + A + D ++ ++YTSGT G K L+H N+ NA
Sbjct: 191 PGTVPWETL--VDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANA 248
Query: 371 A 371
A
Sbjct: 249 A 249
|
Length = 573 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 93 QHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDI 152
++ +A++ + S + +L KVK +G R R+ +SG AP+STE++ + L +
Sbjct: 350 KYKLAWMNRGYSHKKASPMADFLAFRKVKAKLG-GRLRLLISGGAPLSTEIEEF---LRV 405
Query: 153 PIC----EVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGTQTKI---------VDP-DEE 197
C + +G++E G T+ PD+ + G VG P ++ DP E
Sbjct: 406 TSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG--APAVYNELRLEEVPEMGYDPLGEP 463
Query: 198 GNGEICLK 205
GEIC++
Sbjct: 464 PRGEICVR 471
|
Length = 660 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 46/232 (19%), Positives = 87/232 (37%), Gaps = 14/232 (6%)
Query: 193 DPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 252
+P ++ E + V +A+A L LGL+ V I+ N+ E L A+ AG
Sbjct: 72 EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVP 131
Query: 253 AAGM---YTTNSPE-ACL-HCLVTSDANICVVEDDKQLEKILK-VKAQCPKLKAIVQYEG 306
AA + Y+ S + A L H + + + L + + V G
Sbjct: 132 AAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTV---VHVTG 188
Query: 307 KPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 366
+ I++ +L P ++ + I + ++TSG+ G K V+ + +
Sbjct: 189 PGEGIASIAFADLAA---TPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMM 245
Query: 367 TFNAACIIQYF-KLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
N A Q + V + ++P +H + ++ TL+ D
Sbjct: 246 CANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297
|
Length = 624 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 130 RVSLSGAAPISTEL-KRYFLSLDIPICEVFGMSECAGAHTVSAPDD-FKLDGV--GRTIP 185
L API L +R + L I +GM+E GA TV+ PDD + GR +P
Sbjct: 313 FTFLCAGAPIPGILVERAWELLGALIVSAWGMTEN-GAVTVTEPDDALEKASTTDGRPLP 371
Query: 186 GTQTKIVDPD 195
G + K++D +
Sbjct: 372 GVEVKVIDAN 381
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 314 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 373
S D + GR S ++ IAT L++TSGT G K V + N +A
Sbjct: 89 DSLDRIEAAGRYETSLSASFNMDQIAT-----LMFTSGTTGKPKAVPHTFRNHYASAVGS 143
Query: 374 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA 419
+ ++S LPL HI+ ++ ++ + ATL DK
Sbjct: 144 KENLGFTEDDNWLLS-LPLYHISGLSI-LFRWLIEGATLRIVDKFN 187
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 111 LVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTV 169
L WL ++ QA L RV G AP+S EL R L P+ +VFGM+E G
Sbjct: 240 LNLWLEAAEWDQA-DLSSLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--GLVNY 296
Query: 170 SAPDD---FKLDGVGRTI-PGTQTKIVDPD----EEGN-GEIC 203
+ DD + GR I P + +IVD G GE+
Sbjct: 297 TRLDDPPDVIMRTQGRPISPADEIRIVDDQGEPVPPGEVGELL 339
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405
++YTSG+ G K VM+ H + A + + + L +A V+ F S A+ +I+
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGL-TAGDRVLQFASFSFDASVW-EIFPP 155
Query: 406 MTVAATLWFADKNALK 421
+ ATL A L+
Sbjct: 156 LLSGATLVLAPPEVLR 171
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 151 DIPICEVFGMSECAGAHTVSAPDDFKLD----GVGRTIPGTQTKIVDPDEEGN------- 199
++ I +GM+E + T + DD L+ VGR +P + KIVDP E G
Sbjct: 343 EVTIA--YGMTETSPVSTQTRTDD-PLEKRVTTVGRALPHLEVKIVDP-ETGETVPRGEQ 398
Query: 200 GEICLKEY 207
GE+C + Y
Sbjct: 399 GELCTRGY 406
|
Length = 559 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 26/110 (23%)
Query: 156 EVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD--EE----GNGEIC------ 203
E +G++E + PD K +G + GT +++DP+ EE GEI
Sbjct: 229 EGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQV 288
Query: 204 LKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
K Y A++F++L +R +F + DLG I G+
Sbjct: 289 FKGYWNRPEATAESFIELDGKR-------------FFRTGDLGYIDEEGY 325
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 5 RPNQILDSDLLYTTEPHG----RTRIHLGEAGVAAQPPISVPGLLGRTAAQYPDQVALCQ 60
RP D+ G ++R LG P S+P LL + AA+ PD+ L Q
Sbjct: 17 RPLNWKPPDISVERRADGSIVIKSRHPLGP------YPRSIPHLLAKWAAEAPDRPWLAQ 70
Query: 61 -KQENGEWKKVTY---KLQTTGVKRWI 83
+ +G+W+KVTY K + + +
Sbjct: 71 REPGHGQWRKVTYGEAKRAVDALAQAL 97
|
Length = 624 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 37/113 (32%)
Query: 264 ACLHCLVTS---DANICVVEDDK-QLEKILKVKAQCPKLKAIVQY-EGKPDKPGVISWDE 318
A L L+ + I +ED + Q+ K+K +V + PD P VI
Sbjct: 743 ARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVYFCNRDPDDPAVI---- 798
Query: 319 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 371
++TSG+EG K V+LSH N+ N A
Sbjct: 799 ----------------------------LFTSGSEGTPKGVVLSHRNLLANRA 823
|
Length = 1140 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 34/115 (29%)
Query: 332 DRVLETIATNECCTLV----------YTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
+R+ + + LV +TSG+ G K V +SH N+ +++ F L
Sbjct: 78 ERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTE 137
Query: 382 AA-----------LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKA 425
LSV D++ + ATL+ K + A
Sbjct: 138 GDVFSNQAPFSFDLSVF-------------DLFPALASGATLYVIPKEQIADPLA 179
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 301 IVQYEGKPDKPGVISWDELME-LGRAAPDESLDRV-LETIATNECCTLVYTSGTEGASKP 358
+V G + L+ AA D + V +TIA ++TSG+ G K
Sbjct: 172 VVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAK-----FLFTSGSTGLPKA 226
Query: 359 VMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSH 394
V+ +H + N + Q F L ++ +LP +H
Sbjct: 227 VINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNH 263
|
Length = 614 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 349 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 394
TSG+ G+ K V ++H N+ NA + + + ++S+LPL H
Sbjct: 160 TSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205
|
Length = 545 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 23/191 (12%)
Query: 187 TQTKIVDPDE----EGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS 242
Q PD G+ +E +A V +A A G+ + + + N + F S
Sbjct: 14 RQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFES 73
Query: 243 DLGAIYAGGFAAGMYTTN---SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLK 299
A G TN +P+ + S A + D E V+A P L
Sbjct: 74 MFAAFRLGAVWV---PTNFRQTPDEVAYLAEASGARAMICHADFP-EHAAAVRAASPDLT 129
Query: 300 AIVQYEGKPDKPGVISWDELM--ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357
+V G + L+ LG + ++D ++ C +TSGT G K
Sbjct: 130 HVVAIGGARAGLDY---EALVARHLGARVANAAVDH-------DDPCWFFFTSGTTGRPK 179
Query: 358 PVMLSHDNITF 368
+L+H + F
Sbjct: 180 AAVLTHGQMAF 190
|
Length = 528 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHI 395
T+++TSG+ G K V+ + N +A + L ++S LPL H+
Sbjct: 80 ATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLS-LPLFHV 130
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 68 KKVTYKLQTTG-VKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGL 126
K V KL G +KR + ++A + L L++ PY V S + +G
Sbjct: 377 KAVEAKLPPVGSLKRRVFDHAYQSRL----RALKEGKDTPYWNEKV----FSAPRAVLG- 427
Query: 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSE--CAGAHTVSAPDDFKLDGVGRTI 184
R R LSG P+S + + + + + +G++E C G + D + + VG+ +
Sbjct: 428 GRVRAMLSGGGPLSAATQEFVNVVFGMVIQGWGLTETVCCGG--IQRTGDLEPNAVGQLL 485
Query: 185 PGTQTKIVDPDE-------EGNGEICLK 205
G + K++D +E E GEI L+
Sbjct: 486 KGVEMKLLDTEEYKHTDTPEPRGEILLR 513
|
Length = 700 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 313 VISWDELMELGRAAPDESLDRVLETIATN--ECCTLVYTSGTEGASKPVMLSHDNITFNA 370
+++W +++ G +A I N + ++YTSGT G K VM +H ++T
Sbjct: 238 LVAWTDVVAKGHSA----GSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGI 293
Query: 371 ACIIQYF-----KLESAALSVISFLPLSHI 395
+ E + S+LPL+HI
Sbjct: 294 LALEDRLNDLIGPPEEDE-TYCSYLPLAHI 322
|
Length = 700 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 311 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370
PG + +++ + G + V + ++ L YT GT G SK L H NI N
Sbjct: 179 PGHVRFNDALAEGARQ---TFKPV--KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANV 233
Query: 371 ACIIQYFKLESA--------ALSVISFLPLSHIAAQTVDIYSVMTVAA 410
+ + L+ A L+ + LPL HI A TV ++ +
Sbjct: 234 LQMEAW--LQPAFEKKPRPDQLNFVCALPLYHIFALTVC--GLLGMRT 277
|
Length = 557 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405
++YTSG+ G K V+++H ++ A + + + L+ V+ F LS A+ +I+
Sbjct: 125 VIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDD-RVLQFASLSFDASVE-EIFGA 182
Query: 406 MTVAATLWFADKNALK 421
+ ATL ++ +
Sbjct: 183 LLAGATLVVPPEDEER 198
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 135 GAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDP 194
G A +S L + +L +P+ E +G+SECA +++ P + VG+ +P Q I +
Sbjct: 245 GGARVSPSLLQRARALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSIAN- 303
Query: 195 DEEGNGEI 202
+GEI
Sbjct: 304 ----DGEI 307
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 39/137 (28%)
Query: 134 SGAAPIS----TELKRYFLSLDIPICEVFGMSECAGAHTVS--APDDFKLDGVGRTIPGT 187
S +AP+ L++ F +P+ E +GM+E A + P K VGR G
Sbjct: 125 SASAPLPPAVLDRLEKRF---GVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPA-GV 180
Query: 188 QTKIVDPD----EEG-NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNA 236
+ I+D D G GEI ++ Y N + + G
Sbjct: 181 EVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNN-PEANREAFRDG-------------- 225
Query: 237 PEWFYS-DLGAIYAGGF 252
WF + DLG + G+
Sbjct: 226 --WFRTGDLGYLDEDGY 240
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| KOG1256|consensus | 691 | 100.0 | ||
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| KOG1180|consensus | 678 | 100.0 | ||
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 99.98 | |
| KOG1177|consensus | 596 | 99.97 | ||
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 99.97 | |
| KOG1256|consensus | 691 | 99.96 | ||
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 99.95 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 99.94 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 99.93 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 99.93 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 99.93 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 99.93 | |
| KOG1176|consensus | 537 | 99.93 | ||
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.92 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 99.92 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 99.92 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 99.92 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 99.91 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 99.91 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 99.91 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 99.91 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 99.91 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 99.9 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 99.9 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 99.9 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 99.9 | |
| PLN02654 | 666 | acetate-CoA ligase | 99.9 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 99.89 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 99.89 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 99.89 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 99.89 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 99.89 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 99.89 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.89 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 99.89 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.89 | |
| KOG1176|consensus | 537 | 99.89 | ||
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 99.89 | |
| KOG1180|consensus | 678 | 99.89 | ||
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 99.89 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 99.89 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 99.88 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 99.88 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 99.88 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 99.88 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 99.88 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 99.88 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 99.88 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 99.88 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 99.87 | |
| KOG1179|consensus | 649 | 99.87 | ||
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 99.87 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 99.87 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.87 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 99.87 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 99.87 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 99.87 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 99.87 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 99.87 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 99.87 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 99.87 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 99.86 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 99.86 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 99.86 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 99.86 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 99.86 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 99.86 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 99.86 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 99.86 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 99.86 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 99.86 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 99.86 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 99.85 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 99.85 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 99.85 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 99.85 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 99.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.85 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 99.85 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 99.85 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 99.84 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 99.84 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 99.84 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.84 | |
| PRK09274 | 552 | peptide synthase; Provisional | 99.84 | |
| PLN02479 | 567 | acetate-CoA ligase | 99.84 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.84 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 99.84 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 99.84 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.83 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.83 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.83 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 99.83 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.83 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 99.83 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 99.83 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.83 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 99.83 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 99.82 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 99.82 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 99.82 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.81 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.81 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.81 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.81 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.81 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.81 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.81 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.81 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.81 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 99.81 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 99.81 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 99.8 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.8 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.8 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.8 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.79 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.79 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.79 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 99.79 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 99.78 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.77 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 99.77 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.77 | |
| KOG1177|consensus | 596 | 99.77 | ||
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.77 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.76 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.76 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 99.74 | |
| PLN02654 | 666 | acetate-CoA ligase | 99.71 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 99.7 | |
| KOG1175|consensus | 626 | 99.7 | ||
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 99.68 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 99.67 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 99.67 | |
| PRK09274 | 552 | peptide synthase; Provisional | 99.65 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.65 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 99.65 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 99.64 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 99.64 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 99.64 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.63 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 99.63 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.63 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 99.63 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 99.62 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 99.61 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 99.61 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 99.61 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 99.59 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 99.59 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 99.59 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 99.59 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 99.59 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 99.58 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 99.57 | |
| KOG1175|consensus | 626 | 99.57 | ||
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 99.57 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 99.57 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 99.57 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 99.56 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.56 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 99.56 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.55 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 99.55 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 99.55 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.54 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 99.54 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 99.54 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 99.53 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 99.53 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.53 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 99.53 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 99.53 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.53 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 99.53 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 99.52 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 99.52 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 99.52 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.52 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 99.52 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 99.52 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.51 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 99.51 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.51 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.51 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 99.51 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 99.5 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 99.5 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.49 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.49 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 99.49 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 99.48 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 99.47 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 99.47 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 99.47 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 99.46 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 99.46 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 99.45 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.45 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.45 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 99.45 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 99.45 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 99.45 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.44 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 99.44 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 99.44 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 99.41 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.38 | |
| PLN02479 | 567 | acetate-CoA ligase | 99.38 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.37 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 99.36 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.35 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.35 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 99.31 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 99.3 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 99.3 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 99.3 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.29 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 99.26 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 99.24 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.2 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.18 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.16 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 99.16 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.15 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.07 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 98.95 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 98.87 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 98.83 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 98.54 | |
| KOG3628|consensus | 1363 | 98.47 | ||
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 98.44 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 98.23 | |
| KOG1178|consensus | 1032 | 98.16 | ||
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 97.99 | |
| KOG1179|consensus | 649 | 97.26 | ||
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 97.23 | |
| KOG3628|consensus | 1363 | 96.87 | ||
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 96.77 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.96 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 90.4 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 86.21 |
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=368.84 Aligned_cols=332 Identities=25% Similarity=0.363 Sum_probs=245.6
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhcc-chhhHHHHHHHhhhhh-HHHHH
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQT-TGVKRWIANYAKSTSL-QHYMA 97 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~-~~~~~ 97 (486)
+||+..+.+|++. +||+|++|||+|+++|+.+ .+++++ +++||+||+||++++. ++...
T Consensus 334 ~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I------------------~~~~~~sgflkr~l~~~A~~~k~~~~~~~ 395 (691)
T KOG1256|consen 334 RGDILKLTDDLKELKPTVFPGVPRVLERIYEGI------------------QKQVQKSGFLKRKLFNFAMAYKLEHRLMK 395 (691)
T ss_pred cCChHHHHHHHHHhCCcEEeccHhHHHHHHHHH------------------HHHHhcchHHHHHHHHHHHHHHHHHHhhC
Confidence 7999999999999 9999999999999999876 445555 5599999999999998 44333
Q ss_pred HhhhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCC
Q psy2842 98 YLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFK 176 (486)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~ 176 (486)
+... . ..+++++|++++++..+| +++|.+++|+||+++++.+|++. +|+.|+++||||||++.++...+++..
T Consensus 396 G~~~----~-~~~~~D~lVf~KI~~~LG-g~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~ 469 (691)
T KOG1256|consen 396 GKSR----S-RDRFADKLVFHKIKQSLG-GNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNV 469 (691)
T ss_pred CCCc----c-cchHHHHHHHHHHHHHhc-CceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCC
Confidence 3221 1 689999999999999999 99999999999999999999999 689999999999999777777777779
Q ss_pred cCccccccCCceEEEECCCCC------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhH
Q psy2842 177 LDGVGRTIPGTQTKIVDPDEE------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDL 244 (486)
Q Consensus 177 ~~s~G~p~p~~~~~i~d~~~~------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~ 244 (486)
.|++|.|+|++++|++|..+. ..|||+++ ||++++++|++.|+++| |.+|||++..++++.+.+.
T Consensus 470 lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG---WLhTGDiG~~~p~G~l~Ii 546 (691)
T KOG1256|consen 470 LGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDG---WLHTGDIGEWDPNGTLKII 546 (691)
T ss_pred CCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhcccc---ccccccceeECCCccEEEE
Confidence 999999999999999886543 35888865 99999999999999999 9999999999999998888
Q ss_pred H-----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHH
Q psy2842 245 G-----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 319 (486)
Q Consensus 245 g-----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~ 319 (486)
+ ...++|.+| .++ .++++..+.+.+..+++.+++... .+
T Consensus 547 dRkK~ifklaqGEyV------aPe-----------------------~IEniy~~~~~V~qi~V~g~s~~~--~L----- 590 (691)
T KOG1256|consen 547 DRKKNIFKLAQGEYV------APE-----------------------KIENIYKRSLPVQQIFVLGDSLRS--FL----- 590 (691)
T ss_pred ecccceEEcCCCCcc------ChH-----------------------HHHHHHhcCCceEEEEEECCcchh--cE-----
Confidence 7 333566664 223 333444444445555555443211 00
Q ss_pred HHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHH
Q psy2842 320 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 399 (486)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 399 (486)
++.+ +..-.-+...+. ..++ + +.+.
T Consensus 591 -----------------------vaiV-------------vpd~e~~~~~a~----~~~~-~------------~~~e-- 615 (691)
T KOG1256|consen 591 -----------------------VAIV-------------VPDPEVLKSWAA----KDGV-K------------GTFE-- 615 (691)
T ss_pred -----------------------EEEE-------------ecChhhchhhHH----HccC-c------------hhHH--
Confidence 0000 000000000000 0000 0 0000
Q ss_pred HHHHHHHHhCcEEEEcCCChHHHHHHHH-HHHhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHH
Q psy2842 400 VDIYSVMTVAATLWFADKNALKVYKATQ-AAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 478 (486)
Q Consensus 400 ~~~~~~l~~G~tv~~~~~~~~~~~~~i~-~~i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~ 478 (486)
. +.+.. ...+.+. +.++-.+...+...++|+.+.+.+.+|++++|++|||+|+||..+.++|++
T Consensus 616 -e------------lc~n~--~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~ 680 (691)
T KOG1256|consen 616 -E------------LCRNL--DVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKK 680 (691)
T ss_pred -H------------HhcCh--hhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHH
Confidence 0 00110 1122222 223334556788899999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q psy2842 479 IIDKFYD 485 (486)
Q Consensus 479 ~I~~lY~ 485 (486)
+||+||+
T Consensus 681 ~Id~mY~ 687 (691)
T KOG1256|consen 681 QIDELYK 687 (691)
T ss_pred HHHHHHh
Confidence 9999996
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=345.37 Aligned_cols=339 Identities=25% Similarity=0.366 Sum_probs=247.1
Q ss_pred eccCceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHH
Q psy2842 18 TEPHGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYM 96 (486)
Q Consensus 18 ~~~~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (486)
+....|++.+.+|++. |||++++|||+|+++++.+ ++++. +++..++++|+||++.+.+...
T Consensus 262 ~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I--------------~~kv~---~~~~~~~~if~~a~~~~~~~~~ 324 (613)
T COG1022 262 VLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGI--------------MEKVA---KAPAVRRKLFRWALKVAYKKIS 324 (613)
T ss_pred EEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHH--------------HHHHH---hcchhHHHHHHHHHHHHHHHHH
Confidence 3445588889999999 9999999999999999887 44444 5677888899999999855544
Q ss_pred HHhhhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCC
Q psy2842 97 AYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFK 176 (486)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~ 176 (486)
+..... .+...+...++|+++++++.+| +++|.++||||||++++..||+.+|+++.++||||||++.++++++...+
T Consensus 325 ~~~~~~-~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~~~~ 402 (613)
T COG1022 325 RALLGG-GPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDRFV 402 (613)
T ss_pred hhhccc-CCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccccCcc
Confidence 433322 2333344499999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCceEEEECCCCC-CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH-----HhHcC
Q psy2842 177 LDGVGRTIPGTQTKIVDPDEE-GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG-----AIYAG 250 (486)
Q Consensus 177 ~~s~G~p~p~~~~~i~d~~~~-~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g-----~~~~g 250 (486)
.||+|+|+|++|++|+|+..- .+|...++|||+++++|+++|+++| |.+|||++..++++++.+.| +..++
T Consensus 403 ~gtvG~p~p~~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DG---Wf~TGDlg~~d~~g~L~i~gRkK~~i~l~~ 479 (613)
T COG1022 403 LGTVGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDG---WFRTGDLGELDEDGYLVITGRKKELIKLSN 479 (613)
T ss_pred cCCcCCcCCCceEEEccCceEEEecchhcchhcCChHHHhhhccccC---CcccCceeEEcCCCcEEEeecccceEECCC
Confidence 999999999999999993111 3444445699999999999999999 99999999999999888887 33345
Q ss_pred CeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchh
Q psy2842 251 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDES 330 (486)
Q Consensus 251 g~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (486)
|.+ |.|. .+++.....|.+..++++++....
T Consensus 480 Gkn--IaP~---------------------------~IE~~l~~~~~I~qi~vvg~~k~~-------------------- 510 (613)
T COG1022 480 GKN--IAPE---------------------------PIESKLAKSPLIEQICVVGDDKKF-------------------- 510 (613)
T ss_pred Ccc--cChH---------------------------HHHHHHhcCCCeeEEEEEecCCcc--------------------
Confidence 555 2222 233333444444444444421111
Q ss_pred hHhhhccCCCCceEEEEcCCCCCCCCcee-EechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhC
Q psy2842 331 LDRVLETIATNECCTLVYTSGTEGASKPV-MLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVA 409 (486)
Q Consensus 331 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV-~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G 409 (486)
+.++ +...+++. ......+.... .+.. -+
T Consensus 511 -------------------------~~AlIvp~~~~l~----~~a~~~~~~~~-------~~~~---~l----------- 540 (613)
T COG1022 511 -------------------------LVALIVPDFDALE----KWAESLNKVIS-------ASRE---EL----------- 540 (613)
T ss_pred -------------------------eEEEEeCCHHHHH----HHHHhcccccc-------CCHH---HH-----------
Confidence 0011 11122221 11111110000 0000 00
Q ss_pred cEEEEcCCChHHHHHHHHHHHhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 410 ATLWFADKNALKVYKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 410 ~tv~~~~~~~~~~~~~i~~~i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
+.++ .+.+.+...+...+ ......|++.++.+.+..|+..++++||++|+||+.+.++|++.|+.+|.
T Consensus 541 ----~~~~---~l~~~~~~~i~~~~-~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~ 608 (613)
T COG1022 541 ----ARDP---KLLKLILPRVNKGN-KRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYS 608 (613)
T ss_pred ----hhCH---HHHHHHHHHHHHHh-hcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhh
Confidence 0011 44455555555555 44477899999999999999999999999999999999999999999995
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=297.92 Aligned_cols=326 Identities=21% Similarity=0.306 Sum_probs=249.4
Q ss_pred CCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHhhhcCCCCch
Q psy2842 30 EAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYLEKNVSEPYT 108 (486)
Q Consensus 30 ~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 108 (486)
|+.. |||+|++||.+|+++++.+ .+|+. +.++++|.||..|+++++...... ...
T Consensus 329 D~~~lkPTiM~~VpAV~drVrKgV--------------l~kV~---~~~~~~k~lF~~aY~~K~~~~~~~-------g~~ 384 (678)
T KOG1180|consen 329 DLTELKPTIMAAVPAVMDRVRKGV--------------LSKVN---AMPGLQKKLFWTAYERKLSLIERN-------GPG 384 (678)
T ss_pred ccccccchhhhhhHHHHHHHHHHH--------------HHHHh---hchHHHHHHHHHHHHHHHHHHhcc-------CCc
Confidence 5555 9999999999999999886 44444 459999999999999998865531 123
Q ss_pred HHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCc
Q psy2842 109 YRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 187 (486)
Q Consensus 109 ~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~ 187 (486)
..+++.++|+++++.+| ++||.+++|||||+++..+|+.- +.+|+.+|||+||+|+..+...+.+...|++|.|+|.+
T Consensus 385 s~~ld~lVFkKIr~~lG-G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~ 463 (678)
T KOG1180|consen 385 SPLLDALVFKKIRALLG-GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCC 463 (678)
T ss_pred hhhHHHHHHHHHHHHhC-CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccce
Confidence 57899999999999999 99999999999999999999998 78899999999999999999999999999999999999
Q ss_pred eEEEECCCCC--------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhH-
Q psy2842 188 QTKIVDPDEE--------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIY- 248 (486)
Q Consensus 188 ~~~i~d~~~~--------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~- 248 (486)
+++++|.++. .+||++++ ||+++++++++.|....-++|++|||++...+++.+.++. +.+
T Consensus 464 eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKl 543 (678)
T KOG1180|consen 464 EIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKL 543 (678)
T ss_pred EEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhh
Confidence 9999997543 58999986 9999999999999873337799999999999998776654 222
Q ss_pred cCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCc
Q psy2842 249 AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 328 (486)
Q Consensus 249 ~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (486)
..|.++ .++++++.....|.+.+|.++.+...
T Consensus 544 q~GEYI-----------------------------sL~KvEa~l~s~p~V~NICvyAd~~~------------------- 575 (678)
T KOG1180|consen 544 QNGEYI-----------------------------SLGKVEAALRSSPYVDNICVYADSNK------------------- 575 (678)
T ss_pred ccccee-----------------------------ehHHHHHHHhcCcchhheEEeccccc-------------------
Confidence 233332 35666777777777777777665432
Q ss_pred hhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHh
Q psy2842 329 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTV 408 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~ 408 (486)
..|-++++..+..+ ..++...++.. . .+-.+
T Consensus 576 -------------------------s~~VaiVVPn~~~l---t~lA~k~Gi~~-~----------~~e~l---------- 606 (678)
T KOG1180|consen 576 -------------------------SKPVAIVVPNQKHL---TKLAEKAGISG-S----------TWEEL---------- 606 (678)
T ss_pred -------------------------ceeEEEEcCCchHH---HHHHHHcCCCh-h----------hHHHH----------
Confidence 11222333332222 12223333310 0 00000
Q ss_pred CcEEEEcCCChHHHHHHHHHHH-hhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 409 AATLWFADKNALKVYKATQAAI-DRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 409 G~tv~~~~~~~~~~~~~i~~~i-~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
..+. ++.+++.+.+ +..+...|.+.|-+.++.+.|.+|++++|.+|..+|+||+.|..+|++.|++||+
T Consensus 607 -----c~d~---k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~ 676 (678)
T KOG1180|consen 607 -----CEDK---KVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYK 676 (678)
T ss_pred -----hccH---HHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 0111 4445555444 3344567888899999999999999999999999999999999999999999996
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=314.75 Aligned_cols=339 Identities=16% Similarity=0.160 Sum_probs=243.6
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhh-ccchhhHHHHHHHhhhhhHHHHHH
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKL-QTTGVKRWIANYAKSTSLQHYMAY 98 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ 98 (486)
++|+..++++|+. +||++++||++|++|++.+ .+.+ +.+.+++++|++|++.+.++..
T Consensus 379 ~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 438 (746)
T PTZ00342 379 SKDINYFSKDIYNSKGNILAGVPKVFNRIYTNI------------------MTEINNLPPLKRFLVKKILSLRKSNNN-- 438 (746)
T ss_pred CCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHH------------------HHHHhhcCHHHHHHHHHHHHHHHHhhc--
Confidence 3578888899999 9999999999999999875 2222 3477899999999988877421
Q ss_pred hhhcCCCCchHHHHHHH--HhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCC
Q psy2842 99 LEKNVSEPYTYRLVRWL--ILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDF 175 (486)
Q Consensus 99 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~ 175 (486)
+. ..++++.+ +++++++.+| ++||.+++||+|+++++.++|+. +|++++++|||||+++.++.+.+.+.
T Consensus 439 ---~~----~~~~~~~~~~v~~kir~~lg-~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~ 510 (746)
T PTZ00342 439 ---GG----FSKFLEGITHISSKIKDKVN-PNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDN 510 (746)
T ss_pred ---CC----cchHHHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCCC
Confidence 11 12344444 7889999999 99999999999999999999987 89999999999999888777776667
Q ss_pred CcCcccccc-CCceEEEECCCCC------Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhh
Q psy2842 176 KLDGVGRTI-PGTQTKIVDPDEE------GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS 242 (486)
Q Consensus 176 ~~~s~G~p~-p~~~~~i~d~~~~------~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~ 242 (486)
+++++|+|+ |+++++|+|.++. ..||+++ .|||++++.+++.|.++| |.+|||++..+.++++.
T Consensus 511 ~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dG---W~~TGDig~~d~dG~l~ 587 (746)
T PTZ00342 511 NTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDG---YFKTGDIVQINKNGSLT 587 (746)
T ss_pred CcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCC---cccCCcEEEECCCCeEE
Confidence 889999998 9999999984321 4678776 489999999999998788 99999999999999999
Q ss_pred hHH----HhH-cCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHH
Q psy2842 243 DLG----AIY-AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWD 317 (486)
Q Consensus 243 ~~g----~~~-~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~ 317 (486)
++| +++ .||.+ |+|...|+.+..+..+.++.+++.+.. +.+-.+|+.+.+ .+.
T Consensus 588 i~gR~kdlIkls~Ge~--I~p~eIE~~l~~~p~V~~~~VvG~~~~-------------~~~~Alvv~d~~-------~~~ 645 (746)
T PTZ00342 588 FLDRSKGLVKLSQGEY--IETDMLNNLYSQISFINFCVVYGDDSM-------------DGPLAIISVDKY-------LLF 645 (746)
T ss_pred EEccCCCeEEeCCCEE--EchHHHHHHHhcCCCccEEEEEccCCc-------------cccEEEEECCHH-------HHH
Confidence 988 666 68888 577777777777766666655543211 112223321110 000
Q ss_pred HHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHH
Q psy2842 318 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 397 (486)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 397 (486)
+......-. -.+|.+. .++.. .. . -+.
T Consensus 646 ~~a~~~~~~------------------------~~~~i~~------~~~~~-------~~---~--------~~~----- 672 (746)
T PTZ00342 646 KCLKDDNML------------------------ESTGINE------KNYLE-------KL---T--------DET----- 672 (746)
T ss_pred HHHHhcCCc------------------------cccccCc------ccHHH-------Hh---h--------hhh-----
Confidence 100000000 0000000 00000 00 0 000
Q ss_pred HHHHHHHHHHhCcEEEEcCCChHHHHHHHHHHHhhh-hHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHH
Q psy2842 398 QTVDIYSVMTVAATLWFADKNALKVYKATQAAIDRA-NLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKY 476 (486)
Q Consensus 398 ~~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~~i~~~-~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y 476 (486)
+ ....+.+.+.+.+.+. +-..|.++|+|++|.+++.+|++ +|++|||+|+||+.|.++|
T Consensus 673 ----------------~---~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~-~~~lTpt~KlkR~~v~~~y 732 (746)
T PTZ00342 673 ----------------I---NNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT-NNYLTPTFKVKRFYVFKDY 732 (746)
T ss_pred ----------------h---ccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC-CCccChhhhhhHHHHHHHH
Confidence 0 1114556666666665 33578999999999999999999 5799999999999999999
Q ss_pred H---HHHHhhhc
Q psy2842 477 Q---SIIDKFYD 485 (486)
Q Consensus 477 ~---~~I~~lY~ 485 (486)
+ +.|++||.
T Consensus 733 ~~~i~~i~~~y~ 744 (746)
T PTZ00342 733 AFFIDQVKKIYK 744 (746)
T ss_pred HHHHHHHHHHhc
Confidence 9 77778885
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=303.38 Aligned_cols=331 Identities=21% Similarity=0.274 Sum_probs=238.2
Q ss_pred ceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhh-ccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 22 GRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKL-QTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 22 ~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
+++..++++++. +||++++||++|+++++.+ ...+ +.+.+++++|++|++.+......
T Consensus 302 ~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~-- 361 (666)
T PLN02614 302 GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGL------------------QKKLSDGGFLKKFVFDSAFSYKFGNMKK-- 361 (666)
T ss_pred CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHH------------------HHHHhccCHHHHHHHHHHHHHHHHHHHc--
Confidence 577888899999 9999999999999998764 1222 34678899999999865544322
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHhC-CCceeccccccccccccccCCCCC-CCc
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDD-FKL 177 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~~~~-~~~ 177 (486)
+......+++++.+++.++++.++ +++|.+++||+|+++++.++++.+ +++++++||+||+++.++.+.+.+ .+.
T Consensus 362 --~~~~~~~~~~~~~~~~~~~~~~lg-~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 438 (666)
T PLN02614 362 --GQSHVEASPLCDKLVFNKVKQGLG-GNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDML 438 (666)
T ss_pred --CCCCcccchHHHHHHHHHHHHHhC-CcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcC
Confidence 222334567888899999999888 899999999999999887666666 599999999999987665554433 357
Q ss_pred CccccccCCceEEEECC-CC-------CCccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhh
Q psy2842 178 DGVGRTIPGTQTKIVDP-DE-------EGNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243 (486)
Q Consensus 178 ~s~G~p~p~~~~~i~d~-~~-------~~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~ 243 (486)
+++|+|+|+++++|+|. ++ ++.|||+++ |||++++.+++.| .+| |.+|||++..++++++.+
T Consensus 439 gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dG---w~~TGDlg~~d~dG~l~i 514 (666)
T PLN02614 439 GTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDG---WLHTGDVGEWQPNGSMKI 514 (666)
T ss_pred CcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccC---CcccceEEEEcCCCCEEE
Confidence 99999999999999983 32 146888764 8999999999999 467 999999999999999998
Q ss_pred HH----HhH-cCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHH
Q psy2842 244 LG----AIY-AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 318 (486)
Q Consensus 244 ~g----~~~-~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 318 (486)
+| +++ .||.+ |+|.+.|+.+..+..+.++.|+..+... .+-.+
T Consensus 515 ~gR~kd~ik~~~G~~--V~p~eIE~~l~~~p~V~~~~V~g~~~~~-------------~l~al----------------- 562 (666)
T PLN02614 515 IDRKKNIFKLSQGEY--VAVENIENIYGEVQAVDSVWVYGNSFES-------------FLVAI----------------- 562 (666)
T ss_pred EEcchhceecCCCee--ecHHHHHHHHhcCCCeeEEEEEecCCcc-------------eEEEE-----------------
Confidence 88 666 57888 4666665555555544444444332110 00001
Q ss_pred HHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHH
Q psy2842 319 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQ 398 (486)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~ 398 (486)
|+..+..+... ....++ .. .. .
T Consensus 563 ----------------------------------------vv~~~~~~~~~----~~~~~~-~~--------~~---~-- 584 (666)
T PLN02614 563 ----------------------------------------ANPNQQILERW----AAENGV-SG--------DY---N-- 584 (666)
T ss_pred ----------------------------------------EeCCHHHHHHH----HHhcCC-Cc--------CH---H--
Confidence 12222222211 111111 00 00 0
Q ss_pred HHHHHHHHHhCcEEEEcCCChHHHHHHHHHHHhhh-hHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHH
Q psy2842 399 TVDIYSVMTVAATLWFADKNALKVYKATQAAIDRA-NLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQ 477 (486)
Q Consensus 399 ~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~~i~~~-~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~ 477 (486)
. +.+. ..+.+.+.+.+... +-..|..+|+|++|.+.+..|++++|++|||+|+||+.|.++|+
T Consensus 585 --~------------~~~~--~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~ 648 (666)
T PLN02614 585 --A------------LCQN--EKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQ 648 (666)
T ss_pred --H------------HhcC--HHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHH
Confidence 0 0011 24555666655443 22569999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy2842 478 SIIDKFYD 485 (486)
Q Consensus 478 ~~I~~lY~ 485 (486)
++|++||+
T Consensus 649 ~~i~~ly~ 656 (666)
T PLN02614 649 SVIDEMYK 656 (666)
T ss_pred HHHHHHHH
Confidence 99999996
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=300.28 Aligned_cols=333 Identities=22% Similarity=0.281 Sum_probs=237.4
Q ss_pred EeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHhhhcCCC
Q psy2842 27 HLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYLEKNVSE 105 (486)
Q Consensus 27 ~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 105 (486)
.+++++. +||++++||++|+++++.+ .+++. +.+++++++|++|+..+......... ...
T Consensus 339 ~~~~i~~~~pT~~~~vP~~l~~l~~~~--------------~~~~~---~~~~~~~~l~~~a~~~~~~~~~~~~~--~~~ 399 (696)
T PLN02387 339 TKGDASALKPTLMTAVPAILDRVRDGV--------------RKKVD---AKGGLAKKLFDIAYKRRLAAIEGSWF--GAW 399 (696)
T ss_pred chhhHHHhCCcEEEehhHHHHHHHHHH--------------HHHHh---cccHHHHHHHHHHHHHHHHHhccCCc--ccc
Confidence 4557888 9999999999999998865 11121 45889999999998866554221000 011
Q ss_pred CchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCcccccc
Q psy2842 106 PYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTI 184 (486)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~ 184 (486)
.....+++.+++.++++.+| +++|.+++||+|+++++.++++. +|++++++||+||+++.++.+.+.+...+++|+|+
T Consensus 400 ~~~~~~~~~~~~~~~~~~lg-~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~ 478 (696)
T PLN02387 400 GLEKLLWDALVFKKIRAVLG-GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPL 478 (696)
T ss_pred cccchhhHHHHHHHHHHHhC-CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCC
Confidence 24567899999999999999 99999999999999999999997 79999999999999988777766666789999999
Q ss_pred CCceEEEEC-CCCC--------Cccceehh------hhHhhHHHHHHHHHHc--CCcccceEEEEeecCCchhhhhHH--
Q psy2842 185 PGTQTKIVD-PDEE--------GNGEICLK------EYEANVRTVAKAFLKL--GLERYHSVCIIGFNAPEWFYSDLG-- 245 (486)
Q Consensus 185 p~~~~~i~d-~~~~--------~~gel~~~------~y~~~~~~~a~~l~~~--g~~~~~~vg~~~~~~~~~~~~~~g-- 245 (486)
|+++++|+| ++++ ..|||+++ ||+++++.+++.|..+ | ..|.+|||++..+.++++.++|
T Consensus 479 p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G-~~W~~TGDig~~d~dG~l~i~gR~ 557 (696)
T PLN02387 479 PCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERG-MRWFYTGDIGQFHPDGCLEIIDRK 557 (696)
T ss_pred CceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCC-CceeecCceEEECCCCcEEEEEcc
Confidence 999999998 3331 35888764 8999999999998432 2 3499999999999999998888
Q ss_pred --HhHc-CCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHh
Q psy2842 246 --AIYA-GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 322 (486)
Q Consensus 246 --~~~~-gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 322 (486)
+++. ||.+ |+|...|+.+..+..+.++.++..+..
T Consensus 558 kd~ik~~~Ge~--I~p~eIE~~l~~~p~V~~~~V~g~~~~---------------------------------------- 595 (696)
T PLN02387 558 KDIVKLQHGEY--VSLGKVEAALSVSPYVDNIMVHADPFH---------------------------------------- 595 (696)
T ss_pred cceEECCCCeE--EchHHHHHHHhcCCCeeEEEEEecCCc----------------------------------------
Confidence 6664 6887 455555555444444443333221110
Q ss_pred ccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHH
Q psy2842 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDI 402 (486)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~ 402 (486)
+.+..+ |+.....+.. +....++. . .....+
T Consensus 596 ------------------~~~~a~------------vv~~~~~~~~----~~~~~~~~-~----------~~~~~~---- 626 (696)
T PLN02387 596 ------------------SYCVAL------------VVPSQQALEK----WAKKAGID-Y----------SNFAEL---- 626 (696)
T ss_pred ------------------ceEEEE------------EEeCHHHHHH----HHHHcCCC-C----------CCHHHH----
Confidence 000111 1222222221 11111110 0 000000
Q ss_pred HHHHHhCcEEEEcCCChHHHHHHHHHHHhhhh-HHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHH
Q psy2842 403 YSVMTVAATLWFADKNALKVYKATQAAIDRAN-LKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIID 481 (486)
Q Consensus 403 ~~~l~~G~tv~~~~~~~~~~~~~i~~~i~~~~-~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~ 481 (486)
.+. ....+.+.+.+.+.. ...|..+++++++.+.+.+|++++|++|||+|+||+.|.++|+++|+
T Consensus 627 ------------~~~--~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~ 692 (696)
T PLN02387 627 ------------CEK--EEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLK 692 (696)
T ss_pred ------------hcC--HHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHH
Confidence 011 145566666666653 24688999999999999999999999999999999999999999999
Q ss_pred hhhc
Q psy2842 482 KFYD 485 (486)
Q Consensus 482 ~lY~ 485 (486)
+||+
T Consensus 693 ~ly~ 696 (696)
T PLN02387 693 KLYE 696 (696)
T ss_pred HHhC
Confidence 9995
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=298.86 Aligned_cols=333 Identities=17% Similarity=0.254 Sum_probs=236.9
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
++++..++++++. +||++++||++|+++++.+ .+++. ..+.+++++|++|++.+..+...+
T Consensus 298 ~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~--------------~~~~~---~~~~~~~~l~~~a~~~~~~~~~~~- 359 (660)
T PLN02861 298 QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGI--------------MQKIS---SGGMLRKKLFDFAYNYKLGNLRKG- 359 (660)
T ss_pred CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHH--------------HHHHh---ccCHHHHHHHHHHHHHHHHHHhcC-
Confidence 3467778888999 9999999999999998875 12222 458899999999999887654322
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHhCCC-ceeccccccccccccccCCCCC-CCc
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDI-PICEVFGMSECAGAHTVSAPDD-FKL 177 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~~g~-~i~~~yG~TE~~~~~~~~~~~~-~~~ 177 (486)
.......+.++.++++++++.+| +++|.+++||+|+++++.++++.++. +++++||+||+++.++.+.... .+.
T Consensus 360 ---~~~~~~~~~~~~~~~~~~r~~lg-~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~ 435 (660)
T PLN02861 360 ---LKQEEASPRLDRLVFDKIKEGLG-GRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMV 435 (660)
T ss_pred ---CCCcCccHhHHHHHHHHHHHHhC-CcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccccCCCC
Confidence 11222346778888999999998 99999999999999999877766764 7999999999987665544332 357
Q ss_pred CccccccCCceEEEECC--CC------CCccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhh
Q psy2842 178 DGVGRTIPGTQTKIVDP--DE------EGNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243 (486)
Q Consensus 178 ~s~G~p~p~~~~~i~d~--~~------~~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~ 243 (486)
+++|+|+|+++++|+|. +| ...|||++ .|||++++.+++.| .+| |.+|||++..++++++.+
T Consensus 436 gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dG---w~~TGDlg~~d~dG~l~i 511 (660)
T PLN02861 436 GTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDG---WFHTGDIGEWQPNGAMKI 511 (660)
T ss_pred CCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hcc---CcccCceEEECCCCcEEE
Confidence 99999999999999973 22 13688865 48999999999999 467 999999999999999998
Q ss_pred HH----HhH-cCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHH
Q psy2842 244 LG----AIY-AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 318 (486)
Q Consensus 244 ~g----~~~-~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 318 (486)
.| +++ .||.+ |+|.+.|..+..+..+.++.++..+... .+
T Consensus 512 ~GR~kd~Ik~~~G~~--I~p~eIE~~l~~~p~V~~a~V~G~~~~~-------------~~-------------------- 556 (660)
T PLN02861 512 IDRKKNIFKLSQGEY--VAVENLENTYSRCPLIASIWVYGNSFES-------------FL-------------------- 556 (660)
T ss_pred EeccccceEcCCCeE--EcHHHHHHHHhcCCCeeEEEEEecCCcc-------------ee--------------------
Confidence 88 666 47888 5666666666555555555444432110 00
Q ss_pred HHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHH
Q psy2842 319 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQ 398 (486)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~ 398 (486)
.|++ +.....+... ....+. . . ....+
T Consensus 557 ------------------------~A~v-------------v~~~~~l~~~----~~~~~~-~--------~---~~~~~ 583 (660)
T PLN02861 557 ------------------------VAVV-------------VPDRQALEDW----AANNNK-T--------G---DFKSL 583 (660)
T ss_pred ------------------------EEEE-------------EcCHHHHHHH----HHHcCC-C--------C---CHHHH
Confidence 1111 1111111111 111000 0 0 00000
Q ss_pred HHHHHHHHHhCcEEEEcCCChHHHHHHHHHHHhhhhH-HHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHH
Q psy2842 399 TVDIYSVMTVAATLWFADKNALKVYKATQAAIDRANL-KSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQ 477 (486)
Q Consensus 399 ~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~~i~~~~~-~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~ 477 (486)
.+. ......+.+.++..+. ..+..+++|+++.+.+.+|++++|++||++|+||+.|.++|+
T Consensus 584 ----------------~~~--~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~ 645 (660)
T PLN02861 584 ----------------CKN--LKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYK 645 (660)
T ss_pred ----------------hcC--HHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHH
Confidence 000 1333444455555442 248899999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy2842 478 SIIDKFYD 485 (486)
Q Consensus 478 ~~I~~lY~ 485 (486)
++|++||+
T Consensus 646 ~~I~~lY~ 653 (660)
T PLN02861 646 DCIDQLYS 653 (660)
T ss_pred HHHHHHHH
Confidence 99999996
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=290.92 Aligned_cols=332 Identities=19% Similarity=0.234 Sum_probs=237.6
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhh-ccchhhHHHHHHHhhhhhHHHHHH
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKL-QTTGVKRWIANYAKSTSLQHYMAY 98 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ 98 (486)
++++..++++++. +||++++||++|+++++.+ ...+ +.+++++++|++|++.+..+...+
T Consensus 298 ~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (660)
T PLN02430 298 HGDLNALRDDLMELKPTLLAGVPRVFERIHEGI------------------QKALQELNPRRRLIFNALYKYKLAWMNRG 359 (660)
T ss_pred CCChhhHHHHHHHhCCcEEEecHHHHHHHHHHH------------------HHHHhccCHHHHHHHHHHHHHHHHHHhcC
Confidence 3467778888999 9999999999999998875 2222 347789999999999998775432
Q ss_pred hhhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHhCC-CceeccccccccccccccCCCCC-CC
Q psy2842 99 LEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLD-IPICEVFGMSECAGAHTVSAPDD-FK 176 (486)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~~g-~~i~~~yG~TE~~~~~~~~~~~~-~~ 176 (486)
. ......++++.++++++++.+| +++|.+++||+|+++++.++++.++ ++++++||+||+++.++.+.+.+ .+
T Consensus 360 ~----~~~~~~~~~d~l~~~~i~~~~G-~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 434 (660)
T PLN02430 360 Y----SHKKASPMADFLAFRKVKAKLG-GRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCM 434 (660)
T ss_pred C----CCCCcchhHHHHHHHHHHHHhC-CeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCC
Confidence 1 1223456788899999999999 9999999999999999998888865 68999999999998777665543 35
Q ss_pred cCccccccCCceEEEECCCCC--------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhh
Q psy2842 177 LDGVGRTIPGTQTKIVDPDEE--------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS 242 (486)
Q Consensus 177 ~~s~G~p~p~~~~~i~d~~~~--------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~ 242 (486)
+|++|+|.|+++++++|.++. ..||+.++ ||+++++.+++.| .+| |.+|||++..+.++++.
T Consensus 435 ~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dG---w~~TGDig~~d~dG~l~ 510 (660)
T PLN02430 435 LGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDG---WFHTGDIGEILPNGVLK 510 (660)
T ss_pred CCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hcc---ceeccceEEECCCCcEE
Confidence 799999999999999863211 35888764 8999999999998 567 99999999999999988
Q ss_pred hHH----HhH-cCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHH
Q psy2842 243 DLG----AIY-AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWD 317 (486)
Q Consensus 243 ~~g----~~~-~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~ 317 (486)
+.| +++ .+|.+ |+|...|..+..+.. +..++++++...
T Consensus 511 i~gR~kd~ik~~~G~~--V~p~~IE~~l~~~p~---------------------------V~~~~V~G~~~~-------- 553 (660)
T PLN02430 511 IIDRKKNLIKLSQGEY--VALEYLENVYGQNPI---------------------------VEDIWVYGDSFK-------- 553 (660)
T ss_pred EEEcccccEEcCCCcE--EchHHHHHHHhcCCC---------------------------eeEEEEEecCCc--------
Confidence 888 455 46776 344444444433333 333333321100
Q ss_pred HHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHH
Q psy2842 318 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 397 (486)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 397 (486)
+.++.+ |+.....+.. +....++ .. +...
T Consensus 554 -----------------------~~~~A~------------vv~~~~~~~~----~~~~~~~-~~-----------~~~~ 582 (660)
T PLN02430 554 -----------------------SMLVAV------------VVPNEENTNK----WAKDNGF-TG-----------SFEE 582 (660)
T ss_pred -----------------------ceEEEE------------EEcCHHHHHH----HHHhCCC-CC-----------CHHH
Confidence 000111 1112222111 1111111 00 0000
Q ss_pred HHHHHHHHHHhCcEEEEcCCChHHHHHHHHHHHhhhhH-HHHhhhcccccccccccceeecCCCCCCcccccchHHHHHH
Q psy2842 398 QTVDIYSVMTVAATLWFADKNALKVYKATQAAIDRANL-KSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKY 476 (486)
Q Consensus 398 ~~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~~i~~~~~-~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y 476 (486)
+ .+. ..+.+.+.+.+++.+. ..|..+++|+++.+.+..|++++|++|||+|+||+.|.++|
T Consensus 583 ~----------------~~~--~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y 644 (660)
T PLN02430 583 L----------------CSL--PELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYY 644 (660)
T ss_pred H----------------hcC--HHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHH
Confidence 0 011 2455666666666642 46899999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy2842 477 QSIIDKFYD 485 (486)
Q Consensus 477 ~~~I~~lY~ 485 (486)
++.|++||+
T Consensus 645 ~~~i~~ly~ 653 (660)
T PLN02430 645 QVEIDEMYR 653 (660)
T ss_pred HHHHHHHHH
Confidence 999999996
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=293.49 Aligned_cols=320 Identities=16% Similarity=0.235 Sum_probs=232.8
Q ss_pred CCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhh-ccchhhHHHHHHHhhhhhHHHHHHhhhcCCCCc
Q psy2842 30 EAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKL-QTTGVKRWIANYAKSTSLQHYMAYLEKNVSEPY 107 (486)
Q Consensus 30 ~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 107 (486)
+++. +||++.+||++|+++++.+ .+.+ ..+.+++++|++|+..+.+....+ .
T Consensus 356 ~l~~~~pT~~~~vP~~~~~l~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~---- 409 (700)
T PTZ00216 356 DLTEFRPVFLIGVPRIFDTIKKAV------------------EAKLPPVGSLKRRVFDHAYQSRLRALKEG----K---- 409 (700)
T ss_pred hHHHcCCcEEEechHHHHHHHHHH------------------HHHHhccCHHHHHHHHHHHHHHHHHHHcC----C----
Confidence 6778 9999999999999999875 1122 347889999999998876554322 1
Q ss_pred hHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCC
Q psy2842 108 TYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPG 186 (486)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~ 186 (486)
..++++.+++.+++..+| +++|.+++||+|+++++.++++. ++ +++++||+||+++.++...+.+...+++|+|+|+
T Consensus 410 ~~~~~~~~v~~~~~~~~g-~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g 487 (700)
T PTZ00216 410 DTPYWNEKVFSAPRAVLG-GRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKG 487 (700)
T ss_pred CCchHHHHHHHHHHHHhC-CcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCC
Confidence 134678889999998888 99999999999999999999987 57 9999999999988777666666678999999999
Q ss_pred ceEEEECCCC-------CCccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhH-
Q psy2842 187 TQTKIVDPDE-------EGNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIY- 248 (486)
Q Consensus 187 ~~~~i~d~~~-------~~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~- 248 (486)
++++|+|+++ ...|||+++ ||+++++.+++.|..+| |.+|||++..+.++.+.++| +++
T Consensus 488 ~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dG---w~~TGDig~~d~dG~l~i~GR~kd~ik~ 564 (700)
T PTZ00216 488 VEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDG---WFHTGDVGSIAANGTLRIIGRVKALAKN 564 (700)
T ss_pred eEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccC---CeeccceEEEcCCCcEEEEEehHhheec
Confidence 9999999754 135888764 99999999999998788 99999999999999998888 565
Q ss_pred cCCeeeecCCCCCHHHHHHhhhhCCceE-EEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCC
Q psy2842 249 AGGFAAGMYTTNSPEACLHCLVTSDANI-CVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 327 (486)
Q Consensus 249 ~gg~~vpi~~~~~~~~l~~~~~~~~~~v-vi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (486)
.+|.. |.|.+.|..+..+..+.++.+ ++..+.. +.+
T Consensus 565 ~~G~~--I~p~eIE~~l~~~p~V~~~~~~v~~~~~~------------~~l----------------------------- 601 (700)
T PTZ00216 565 CLGEY--IALEALEALYGQNELVVPNGVCVLVHPAR------------SYI----------------------------- 601 (700)
T ss_pred CCCce--eccHHHHHHHhcCcCcccceEEEEEecCC------------ceE-----------------------------
Confidence 78888 566666666655554444321 2111110 000
Q ss_pred chhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHH
Q psy2842 328 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 407 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~ 407 (486)
++++ +.....+.. +....++ . . ....+
T Consensus 602 ---------------~a~v-------------v~~~~~~~~----~~~~~~~-~--------~---~~~~~--------- 628 (700)
T PTZ00216 602 ---------------CALV-------------LTDEAKAMA----FAKEHGI-E--------G---EYPAI--------- 628 (700)
T ss_pred ---------------EEEE-------------ecCHHHHHH----HHHHcCC-C--------C---CHHHH---------
Confidence 0111 111111111 1111111 0 0 00000
Q ss_pred hCcEEEEcCCChHHHHHHHHHHHhhhh-HHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 408 VAATLWFADKNALKVYKATQAAIDRAN-LKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 408 ~G~tv~~~~~~~~~~~~~i~~~i~~~~-~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
.+. ..+.+.+.+.+++.. ...+..+|+++++.+.+..|++++|++|||+|+||+.|.++|++.|++||+
T Consensus 629 -------~~~--~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 698 (700)
T PTZ00216 629 -------LKD--PEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFA 698 (700)
T ss_pred -------hcC--HHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhc
Confidence 011 144555555555542 146778999999999999999999999999999999999999999999996
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=241.23 Aligned_cols=283 Identities=18% Similarity=0.240 Sum_probs=240.3
Q ss_pred ccCCceEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCH
Q psy2842 183 TIPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 183 p~p~~~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~ 262 (486)
-.|..+..|++.++ -++||+++....+.+|..|...|+++|||||+.++|..+|+...+|+.++|.+.+++||.+..
T Consensus 62 ~v~dkea~Vf~~eg---~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~ 138 (596)
T KOG1177|consen 62 RVPDKEAAVFDHEG---IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQS 138 (596)
T ss_pred ccCcceEEEEeecc---chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCccccc
Confidence 45778888888765 359999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCceEEEEcChh----HHHHHHHHh-------------hcCCCCeEEEEecCCCCCCCcccHHHHHHhccC
Q psy2842 263 EACLHCLVTSDANICVVEDDK----QLEKILKVK-------------AQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 325 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~~~----~~~~~~~~~-------------~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~ 325 (486)
.++++.++..++++++.+... +.+.+..+. ..+|.+++++..+++...++...+.+++..+..
T Consensus 139 ~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~~~sev~~~~s~ 218 (596)
T KOG1177|consen 139 EELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAFLLSEVLKAASK 218 (596)
T ss_pred HHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCceehHHHHHhcch
Confidence 999999999999999998752 223333332 346788888888866667888999999998877
Q ss_pred CCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHH
Q psy2842 326 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 405 (486)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 405 (486)
.....+........+++.+.|.|||||||.|||+.+||.|+++++......+++ .+++++++..|++|.+|....++++
T Consensus 219 ~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~-~e~~~i~~~~Pl~H~~G~~~~~ma~ 297 (596)
T KOG1177|consen 219 EERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGY-NEKHRICIPNPLYHCFGCVLGVMAA 297 (596)
T ss_pred HHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCc-CcceEEEecCchHHHHHHHHHHHHH
Confidence 665666666666788999999999999999999999999999999999999999 6788999999999999999999999
Q ss_pred HHhCcEEEEcCC--ChHHHHHHHHH------HHhhhhHHHHhhhcccccccccccceeecCCCCCCcccccc
Q psy2842 406 MTVAATLWFADK--NALKVYKATQA------AIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKR 469 (486)
Q Consensus 406 l~~G~tv~~~~~--~~~~~~~~i~~------~i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR 469 (486)
|..|+|++++.+ ++...++.|.+ .-.+..+..+++.++-.++.+...+=.+.+|...|..-+|+
T Consensus 298 l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk~ 369 (596)
T KOG1177|consen 298 LMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLKL 369 (596)
T ss_pred HHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHHHHHH
Confidence 999999999765 55666777665 22456678888899999998888877778888777644443
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=279.33 Aligned_cols=332 Identities=20% Similarity=0.259 Sum_probs=237.4
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
++++..++++++. +||++++||++|+++++.+ .+.+. .++.+++++|++|+..+......+
T Consensus 294 ~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~--------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 355 (651)
T PLN02736 294 QGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGI--------------TNAVK---ESGGLKERLFNAAYNAKKQALENG- 355 (651)
T ss_pred CCCHHHHHHHHHHhCCcEEecchHHHHHHHHHH--------------HHHHh---cccHHHHHHHHHHHHHHHHHHHcC-
Confidence 4566778889999 9999999999999998875 11111 458899999999988876443322
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcC
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLD 178 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~ 178 (486)
..+ .+.++.+++.+++..+| +++|.+++||+++++++.+++++ +|++++++||+||+++.++...+.+.+.+
T Consensus 356 ---~~~---~~~~~~~~~~~~~~~lg-~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~ 428 (651)
T PLN02736 356 ---KNP---SPMWDRLVFNKIKAKLG-GRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSG 428 (651)
T ss_pred ---CCC---CchHHHHHHHHHHHHhc-CcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCCCC
Confidence 111 13457777888888888 89999999999999999999987 89999999999999887776666666789
Q ss_pred ccccccCCceEEEECCCC-------C--Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhh
Q psy2842 179 GVGRTIPGTQTKIVDPDE-------E--GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243 (486)
Q Consensus 179 s~G~p~p~~~~~i~d~~~-------~--~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~ 243 (486)
++|+|+|+++++|+|.++ . ..||+.++ ||+++++.+++.|.++| |++|||++..+.++++.+
T Consensus 429 ~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dg---w~~TGDlg~~d~dG~l~i 505 (651)
T PLN02736 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDG---WLHTGDIGLWLPGGRLKI 505 (651)
T ss_pred ccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCC---CeeccceEEEcCCCcEEE
Confidence 999999999999998422 1 35787764 99999999999997778 999999999999999988
Q ss_pred HH----HhHc-CCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHH
Q psy2842 244 LG----AIYA-GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 318 (486)
Q Consensus 244 ~g----~~~~-gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 318 (486)
+| +++. ||.. |+|.+.|..+..+..+.++.++. +. +. +.+
T Consensus 506 ~GR~kd~ik~~~G~~--V~p~eIE~~l~~~p~V~~a~V~g--~~-~~----------~~~-------------------- 550 (651)
T PLN02736 506 IDRKKNIFKLAQGEY--IAPEKIENVYAKCKFVAQCFVYG--DS-LN----------SSL-------------------- 550 (651)
T ss_pred EEechhheEcCCCcE--echHHHHHHHhcCCCeeEEEEEe--cC-CC----------cee--------------------
Confidence 88 6664 7887 45555555555544444443332 10 00 001
Q ss_pred HHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHH
Q psy2842 319 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQ 398 (486)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~ 398 (486)
.|++ +.....+.. +....+. ... +....
T Consensus 551 ------------------------~A~v-------------v~~~~~~~~----~~~~~~~-~~~----------~~~~~ 578 (651)
T PLN02736 551 ------------------------VAVV-------------VVDPEVLKA----WAASEGI-KYE----------DLKQL 578 (651)
T ss_pred ------------------------EEEE-------------EeCHHHHHH----HHHHcCC-Ccc----------CHHHH
Confidence 1111 111111111 1111111 000 00000
Q ss_pred HHHHHHHHHhCcEEEEcCCChHHHHHHHHHHHhhhhH-HHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHH
Q psy2842 399 TVDIYSVMTVAATLWFADKNALKVYKATQAAIDRANL-KSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQ 477 (486)
Q Consensus 399 ~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~~i~~~~~-~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~ 477 (486)
+.+ ..+.+.+.+.++..+. ..|..++.++++.+.+..|++++|++||++|++|+.|.++|+
T Consensus 579 ---------------~~~---~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~ 640 (651)
T PLN02736 579 ---------------CND---PRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFA 640 (651)
T ss_pred ---------------hcC---HHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHH
Confidence 001 1455556565665532 258889999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q psy2842 478 SIIDKFYD 485 (486)
Q Consensus 478 ~~I~~lY~ 485 (486)
+.|++||.
T Consensus 641 ~~i~~~y~ 648 (651)
T PLN02736 641 KAISDMYA 648 (651)
T ss_pred HHHHHHHh
Confidence 99999995
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=242.21 Aligned_cols=222 Identities=30% Similarity=0.466 Sum_probs=186.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
-.-+||+++++.++.++..|...|+++.+.||+++.|+++|++..+||...|+++||++.+.+++++.+++..++..+++
T Consensus 106 ~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~ 185 (691)
T KOG1256|consen 106 YEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVF 185 (691)
T ss_pred cEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhh--cCCCCeEEEEecCCCCC-----CC----cccHHHHHHhccCCCchhhHhhhccCCCCceEEEE
Q psy2842 279 VEDDKQLEKILKVKA--QCPKLKAIVQYEGKPDK-----PG----VISWDELMELGRAAPDESLDRVLETIATNECCTLV 347 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~--~~~~~~~iv~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 347 (486)
+++++..+.+..... +.|.++.+|.+++.... .. ..+|+++++.+...... .. ..+.++|+|.|+
T Consensus 186 vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~---~~-~~p~p~d~atI~ 261 (691)
T KOG1256|consen 186 VDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRK---PR-VPPKPDDLATIC 261 (691)
T ss_pred EeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCC---CC-CCCCccceEEEE
Confidence 999888888888877 48899999999876422 23 78999999998633221 11 357799999999
Q ss_pred cCCCCCCCCceeEechHHHHHHHHHHHHH--cc---CCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHH
Q psy2842 348 YTSGTEGASKPVMLSHDNITFNAACIIQY--FK---LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKV 422 (486)
Q Consensus 348 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~---~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~ 422 (486)
|||||||.|||||+||+|+++.+...... .. ....+|+++++|||.|++..+...+.. ..|+.+.+.+.|+...
T Consensus 262 yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~-~~G~~IgF~~gD~~~l 340 (691)
T KOG1256|consen 262 YTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTF-YIGAKIGFARGDILKL 340 (691)
T ss_pred EcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHh-hcccEEEEecCChHHH
Confidence 99999999999999999999865532211 11 112369999999999999998776654 8999999999876544
Q ss_pred HHH
Q psy2842 423 YKA 425 (486)
Q Consensus 423 ~~~ 425 (486)
.+.
T Consensus 341 ~~d 343 (691)
T KOG1256|consen 341 TDD 343 (691)
T ss_pred HHH
Confidence 333
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=237.70 Aligned_cols=217 Identities=27% Similarity=0.432 Sum_probs=166.2
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
-..+||++++++..++|.+|.+.|+..|+++++++.|+++|++.++|++..|++.||++++..++++.+++..+++++++
T Consensus 43 ~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~ 122 (613)
T COG1022 43 WEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIF 122 (613)
T ss_pred ceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEE
Confidence 46789999999999999999999997799999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecC---CCCCCCcccHHHHHHhccC---CCchhhHhhhccCCCCceEEEEcCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEG---KPDKPGVISWDELMELGRA---APDESLDRVLETIATNECCTLVYTSGT 352 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~i~~TSGT 352 (486)
+++......+..+...++.+..+..... ....+....++.....+.. ..............++|+|.|+|||||
T Consensus 123 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGT 202 (613)
T COG1022 123 VENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGT 202 (613)
T ss_pred ecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhhhhcccccccccCCCCccceEEEEEcCCC
Confidence 9998777777766665443222111111 0000011111111111100 000111112235679999999999999
Q ss_pred CCCCceeEechHHHHHHHHHHHHHcc-CCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 353 EGASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 353 TG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
||.|||||+||+|+.+++........ . .++|+.++++|+.|++...+.....+..|.++++..
T Consensus 203 TG~PKGVmLth~N~~~~v~~~~~~~~~~-~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~ 266 (613)
T COG1022 203 TGTPKGVMLTHRNLLAQVAGIDEVLPPI-GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKE 266 (613)
T ss_pred CCCCceEEEehHHHHHHHHHHHhhCCCC-CCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecC
Confidence 99999999999999999999998886 6 789999999999999999877666677777666543
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=228.93 Aligned_cols=275 Identities=21% Similarity=0.260 Sum_probs=202.4
Q ss_pred ceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEc
Q psy2842 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 280 (486)
Q Consensus 201 el~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~ 280 (486)
.+||+++.++++++|..|.+.|+++|++|+++++|+++++..++||+++|++.+|++|...+.++.++++.+++++++++
T Consensus 38 ~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~ 117 (534)
T COG0318 38 RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITS 117 (534)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEc
Confidence 59999999999999999999899999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeE
Q psy2842 281 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVM 360 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~ 360 (486)
++ ..+....+....+....+........... .++++........... .....++++++++|||||||.||||+
T Consensus 118 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~d~a~i~yTSGTTG~PKgv~ 190 (534)
T COG0318 118 AE-FAALLEAVAEALPVVLVVLLVGDADDRLP-ITLEALAAEGPGPDAD-----ARPVDPDDLAFLLYTSGTTGLPKGVV 190 (534)
T ss_pred cc-chhHHHHHhccCCcceEEEeccccccccc-ccHHHHhhccCCcccc-----cCCCCCCCEEEEEeCCCCCCCCCEeE
Confidence 87 44454555444433333332222111111 3455553322111110 01146889999999999999999999
Q ss_pred echHHHHHHHHHHHHHcc--CCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC---CChHHHHHHHHHH------
Q psy2842 361 LSHDNITFNAACIIQYFK--LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD---KNALKVYKATQAA------ 429 (486)
Q Consensus 361 ~sh~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~---~~~~~~~~~i~~~------ 429 (486)
+||+|+..+.......+. + ..+|++++++|+||.+|+...++.++..|+++++.. .++......+.+.
T Consensus 191 ~th~~~~~~~~~~~~~~~~~~-~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~ 269 (534)
T COG0318 191 LTHRNLLANAAGIAAALGGGL-TPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLS 269 (534)
T ss_pred EecHhHHHHHHHHHHHhcccC-CCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEe
Confidence 999999999888888888 6 788999999999999999998899999999999987 4555566555442
Q ss_pred HhhhhHHHHhhhcccccccccc-cceeecCCCCCCcccccchHHHHHHHH-HHHhhhc
Q psy2842 430 IDRANLKSISNAQKIQKFEFLP-ADFSIPTGELGPTMKVKRPFVVKKYQS-IIDKFYD 485 (486)
Q Consensus 430 i~~~~~~~l~~~~~i~~~~l~p-~~~~~~~g~ltpt~klkR~~i~~~y~~-~I~~lY~ 485 (486)
..+..+..++..+........+ .++.+.+|+..|..- .++ +.++|.. .|-+.|+
T Consensus 270 ~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~-~~~-~~~~~~~~~i~~~YG 325 (534)
T COG0318 270 GVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPEL-LER-FEERFGPIAILEGYG 325 (534)
T ss_pred cchHHHHHHHhCCccCccccccceEEEEecCCcCCHHH-HHH-HHHHhCCCceEEeec
Confidence 2344455666666666655555 566667776544422 222 4444542 3444453
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=233.71 Aligned_cols=216 Identities=22% Similarity=0.351 Sum_probs=176.8
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
..+||++++++++++|..|.+.|+++|++|+++++|+.+|++.++||++.|++++|+++..+.+++.++++.++++++++
T Consensus 77 ~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~ 156 (651)
T PLN02736 77 KWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFC 156 (651)
T ss_pred EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCC---------CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCC
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPD---------KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTS 350 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 350 (486)
+++ ..+.+..+....+.++.+++.++... .....+|+++.+.....+. ......++++++|+|||
T Consensus 157 ~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~dd~a~IlyTS 230 (651)
T PLN02736 157 VPQ-TLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQ-----PFRPPKPEDVATICYTS 230 (651)
T ss_pred CHH-HHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCC-----CCCCCCccceEEEEEcC
Confidence 865 45555556666777777776643211 0123567776654422111 01134578999999999
Q ss_pred CCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHH
Q psy2842 351 GTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVY 423 (486)
Q Consensus 351 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~ 423 (486)
||||.||||++||+|+..++......+++ .++|++++++|++|.++.. .++.++..|+++++.+.++..++
T Consensus 231 GTTG~PKGV~lsh~~l~~~~~~~~~~~~~-~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~i~~~~~~~~~~~ 301 (651)
T PLN02736 231 GTTGTPKGVVLTHGNLIANVAGSSLSTKF-YPSDVHISYLPLAHIYERV-NQIVMLHYGVAVGFYQGDNLKLM 301 (651)
T ss_pred CCCCCCcEEEEecHHHHHHHHHHHhccCC-CCCCEEEEeCCHHHHHHHH-HHHHHHHcCCEEEEeCCCHHHHH
Confidence 99999999999999999888887777777 6789999999999999986 57788999999998876544333
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=232.80 Aligned_cols=214 Identities=24% Similarity=0.359 Sum_probs=167.4
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
..+||+++.++++++|..|.+.|+++|++|+++++|+.+|++.++|+++.|++.||+++..+.+++.++++.++++++++
T Consensus 76 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~ 155 (660)
T PLN02861 76 VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFV 155 (660)
T ss_pred eEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCC-CCeEEEEecCCCC---------CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcC
Q psy2842 280 EDDKQLEKILKVKAQCP-KLKAIVQYEGKPD---------KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYT 349 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T 349 (486)
+++. .+.+.......+ .++.++..++... .....+|.++...+.... ......++++++|+||
T Consensus 156 ~~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~dd~a~i~yT 228 (660)
T PLN02861 156 QESK-ISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDC------ELPPKQKTDICTIMYT 228 (660)
T ss_pred CHHH-HHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccC------CCCccCCCceEEEEec
Confidence 7653 444444444433 4677776653211 012345666665432110 0113357899999999
Q ss_pred CCCCCCCceeEechHHHHHHHHHHHHHccC----CCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHH
Q psy2842 350 SGTEGASKPVMLSHDNITFNAACIIQYFKL----ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421 (486)
Q Consensus 350 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~----~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~ 421 (486)
|||||.||||++||+|+...+......++. ...+|++++++|++|+++.... +.++..|+++++...++..
T Consensus 229 SGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~-~~~l~~G~~v~~~~~~~~~ 303 (660)
T PLN02861 229 SGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIE-TYCISKGASIGFWQGDIRY 303 (660)
T ss_pred CCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHH-HHHHHhCCEEEEeCCCHHH
Confidence 999999999999999999877665554431 1468999999999999998754 4579999999887654433
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=230.98 Aligned_cols=225 Identities=20% Similarity=0.265 Sum_probs=168.7
Q ss_pred cceehhhhHhhHHHHHHHHHHc---CCccc-----------ceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHH
Q psy2842 200 GEICLKEYEANVRTVAKAFLKL---GLERY-----------HSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~---g~~~~-----------~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l 265 (486)
..+||+++++++.++|.+|.+. |+++| ++|+++++|+++|++.++|+++.|++.||+++..+++++
T Consensus 90 ~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el 169 (746)
T PTZ00342 90 NYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVI 169 (746)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHH
Confidence 5799999999999999999863 99998 899999999999999999999999999999999999999
Q ss_pred HHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCC------------------CCc--------------
Q psy2842 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK------------------PGV-------------- 313 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~------------------~~~-------------- 313 (486)
.++++.+++++++++. ...+.+..+....|.++.++++++.... .+.
T Consensus 170 ~~il~~s~~~~lv~~~-~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (746)
T PTZ00342 170 VDILNETKLEWLCLDL-DLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSN 248 (746)
T ss_pred HHHHhcCCCCEEEEcH-HHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999854 4566666667778888888887642110 000
Q ss_pred -----------------ccHHHHHHhccCC--CchhhHh---------hhccCCCCceEEEEcCCCCCCCCceeEechHH
Q psy2842 314 -----------------ISWDELMELGRAA--PDESLDR---------VLETIATNECCTLVYTSGTEGASKPVMLSHDN 365 (486)
Q Consensus 314 -----------------~~~~~~~~~~~~~--~~~~~~~---------~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~ 365 (486)
.+|.++....... ....++. ......++++++|+|||||||.||||++||+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~n 328 (746)
T PTZ00342 249 ELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKN 328 (746)
T ss_pred ccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHH
Confidence 1122222211100 0000000 01234578999999999999999999999999
Q ss_pred HHHHHHHHHHHccC-CCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHHHHH
Q psy2842 366 ITFNAACIIQYFKL-ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKAT 426 (486)
Q Consensus 366 l~~~~~~~~~~~~~-~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~~~i 426 (486)
+.+.+......... ....+++++++|++|+++... .+.++..|+++++.+.++..+.+.+
T Consensus 329 l~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~~~~~~~~l~~di 389 (746)
T PTZ00342 329 LYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AYLSFMLGGTINIWSKDINYFSKDI 389 (746)
T ss_pred HHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCCCHHHHHHHH
Confidence 99887655433211 134689999999999999864 5677999999998766544444433
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=232.89 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=164.7
Q ss_pred ceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEc
Q psy2842 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 280 (486)
Q Consensus 201 el~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~ 280 (486)
.+||+++.++++++|..|.+.|+++|++|+++++|+.+|++.++||++.|++.||+++...++++.++++.+++++++++
T Consensus 79 ~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~ 158 (666)
T PLN02614 79 WQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVE 158 (666)
T ss_pred EeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEEC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHh-hcCCCCeEEEEecCCCCC---------CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCC
Q psy2842 281 DDKQLEKILKVK-AQCPKLKAIVQYEGKPDK---------PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTS 350 (486)
Q Consensus 281 ~~~~~~~~~~~~-~~~~~~~~iv~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 350 (486)
++. ...+.... ...+.++.++.+++.... ....++++++..+..... ......++|+++|+|||
T Consensus 159 ~~~-~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~a~I~yTS 232 (666)
T PLN02614 159 EKK-ISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQY-----DLPIKKKSDICTIMYTS 232 (666)
T ss_pred HHH-HHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCC-----CCCCCCCCceEEEEEcC
Confidence 653 22222211 112235666666532110 013466666654321110 01123578999999999
Q ss_pred CCCCCCceeEechHHHHHHHHHHHHHc-----cCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHHH
Q psy2842 351 GTEGASKPVMLSHDNITFNAACIIQYF-----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYK 424 (486)
Q Consensus 351 GTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~~ 424 (486)
||||.||||++||+|+...+......+ ++ ..+|++++++|++|+++... .+..+..|+++++.+.++..+++
T Consensus 233 GTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~-~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~ 309 (666)
T PLN02614 233 GTTGDPKGVMISNESIVTLIAGVIRLLKSANAAL-TVKDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWRGDVKLLIE 309 (666)
T ss_pred CCCCCCcEEEEecHHHHHHHHHHHhhccccccCC-CCCcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeCCCHHHHHH
Confidence 999999999999999998776654443 34 57899999999999999854 45678899999987654433333
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=220.65 Aligned_cols=253 Identities=21% Similarity=0.292 Sum_probs=198.1
Q ss_pred cceehhhhHhhHHHHHHHHHHcC--CcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLG--LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g--~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
.++||.+++++..++|..|.+.| ++++|+|+++++|+++....++|+...|+++.|+||...+.++...++.++++++
T Consensus 44 ~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kii 123 (537)
T KOG1176|consen 44 RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLI 123 (537)
T ss_pred cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEE
Confidence 68999999999999999999765 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCCC------CCccc-HHHHHHhccCCCchhhHhhhccCCCCceEEEEcCC
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK------PGVIS-WDELMELGRAAPDESLDRVLETIATNECCTLVYTS 350 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 350 (486)
+++.. ..+++.......+ ..+++..+.... ....+ +..++..+... .......+|++.|+|||
T Consensus 124 f~d~~-~~~~i~~~~~~~~--~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~dd~~~il~SS 193 (537)
T KOG1176|consen 124 FVDED-FYDKISEATSKLA--LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPD-------GIRPVSEDDTAAILYSS 193 (537)
T ss_pred EEcCc-hHHHHHHHHhhcC--CceEEEecccCccccccccccccchhhccccCCCc-------ccccCCCCCeEEEecCC
Confidence 99987 4555555554444 234444433111 01111 22222211111 02344569999999999
Q ss_pred CCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHH-
Q psy2842 351 GTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQA- 428 (486)
Q Consensus 351 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~- 428 (486)
||||.||||++||+++..+.......... +..++.++.+|++|++|+...+.+.+..|++++..++ ++..+++.+++
T Consensus 194 GTTg~PKgV~lsHr~~~~~~~~~~~~~~~-~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~ky 272 (537)
T KOG1176|consen 194 GTTGLPKGVVLSHRNLIANTLSIKIGWEL-TSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKY 272 (537)
T ss_pred CCCCCCceEEEecHHHHHHHHHhhhcccC-CCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHh
Confidence 99999999999999999887776666666 5689999999999999998888888888888888877 77777777776
Q ss_pred -----HHhhhhHHHHhhhcccccccccccceeecCCCCCC
Q psy2842 429 -----AIDRANLKSISNAQKIQKFEFLPADFSIPTGELGP 463 (486)
Q Consensus 429 -----~i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltp 463 (486)
.+.|..+..+...+....+.+.+..+...+|...+
T Consensus 273 kvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~ 312 (537)
T KOG1176|consen 273 KVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLS 312 (537)
T ss_pred CEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCC
Confidence 35667778888888778888888888766665443
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=249.43 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=122.7
Q ss_pred eeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhh-ccchhhHHHHHHHhhhhhHHHHHHhh
Q psy2842 23 RTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKL-QTTGVKRWIANYAKSTSLQHYMAYLE 100 (486)
Q Consensus 23 ~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (486)
++..++++|+. +||++++||++|++|++++ ..++ +++++++++|+||++++.+....+
T Consensus 677 d~~~lledL~~~rPTv~~~VPrv~ekI~~~i------------------~~~~~~~~~~~~~lf~~A~~~k~~~~~~g-- 736 (1452)
T PTZ00297 677 DAAHLQRAFVKFQPTILVAAPSLFSTSRLQL------------------SRANERYSAVYSWLFERAFQLRSRLINIH-- 736 (1452)
T ss_pred CHHHHHHHHHHHCCEEEEecHHHHHHHHHHH------------------HHHhhhhhHHHHHHHHHHHHHHHHHHhcC--
Confidence 66778899999 9999999999999998876 2222 458899999999999876543221
Q ss_pred hcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCcc
Q psy2842 101 KNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGV 180 (486)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~ 180 (486)
+....++++++++++++.+| +++|.+++||+ ++...++...++++..+||+||+. +.+.+.+.+. .
T Consensus 737 -----~~~~~l~d~LVf~kir~~lG-Grlr~~isGga---~~~l~~~l~~~i~i~~g~glTE~~---~~~~~~~~~~--~ 802 (1452)
T PTZ00297 737 -----RRDSSLLRFIFFRATQELLG-GCVEKIVLCVS---EESTSFSLLEHISVCYVPCLREVF---FLPSEGVFCV--D 802 (1452)
T ss_pred -----CCCcHHHHHHHHHHHHHHhc-CCeEEEEECCC---ccccChHHhCCceEEEecceEEee---eecCCCCccc--C
Confidence 12245889999999999999 99999999984 223334444578899999999953 3455554443 3
Q ss_pred ccccCCceEEEECCCCC----CccceehhhhHhhHHHHHHHH
Q psy2842 181 GRTIPGTQTKIVDPDEE----GNGEICLKEYEANVRTVAKAF 218 (486)
Q Consensus 181 G~p~p~~~~~i~d~~~~----~~gel~~~~y~~~~~~~a~~l 218 (486)
|+|+|++|+||.|+++. ..||+.++ |++++++|++.+
T Consensus 803 G~PlpgvEvKI~~~~E~~~~~~~GEIlvr-~~kdpe~T~e~~ 843 (1452)
T PTZ00297 803 GTPAPSLQVDLEPFDEPSDGAGIGQLVLA-KKGEPRRTLPIA 843 (1452)
T ss_pred CeecCceEEEEcccccccCCCCCCeEEEE-ECCChHHHHHhh
Confidence 99999999999975322 46999996 568899998853
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=209.43 Aligned_cols=249 Identities=18% Similarity=0.173 Sum_probs=188.2
Q ss_pred cceehhhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.++||+++.+.+.++|+.|.+ .|+ +||||++++++.++.++.++||.+.|++.+|+++.+.++++...+..+++++++
T Consensus 39 ~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vi 117 (528)
T COG0365 39 RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLI 117 (528)
T ss_pred eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEE
Confidence 679999999999999999976 567 999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHH--H--HHHH-HhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCC
Q psy2842 279 VEDDKQL--E--KILK-VKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 353 (486)
Q Consensus 279 ~~~~~~~--~--~~~~-~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT 353 (486)
+.+...- . .+.. +...... +++..... +.|+++.+....... ....+.+|+++|+||||||
T Consensus 118 t~d~~~~~gk~~~~~~~~~~~~~~---~iv~~r~~-----~~~~~~~~~~~~~~~------~~~~~~~dpl~ilYTSGTT 183 (528)
T COG0365 118 ADDGTFRNGKEIALLEDADAVLSS---VVVVPRLG-----LWYDEAVEKASEKFE------FEPLPADDPLFLLYTSGTT 183 (528)
T ss_pred EecccccccccccchhHHHHhhcc---eEEecccc-----ccHHHHhhccCCCCC------ccccCCCCeEEEEeCCCCC
Confidence 8876211 0 0000 1111111 22222211 667776655432111 1125789999999999999
Q ss_pred CCCceeEechHHHHHHHHHHHH-HccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC----hHHHHHHHHH
Q psy2842 354 GASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN----ALKVYKATQA 428 (486)
Q Consensus 354 G~PKgV~~sh~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~----~~~~~~~i~~ 428 (486)
|+||||+++|.++......... .+.+ .++|++.+..+..|++|....++.+|.+|+|+++.+.. +....+.+++
T Consensus 184 G~PKgv~H~~gg~l~~~~~~~~~~~~~-~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~ 262 (528)
T COG0365 184 GKPKGIVHSHGGYLVEHRLTAKFHGDL-LPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEK 262 (528)
T ss_pred CCCceEEEeCchHHHHHHHHHHHhhCC-CCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 9999999999988766655554 5666 58999999999999999999999999999999987653 3345555544
Q ss_pred ------HHhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 429 ------AIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 429 ------~i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
...|.-+..|.+...+.++++++.+.....||..+.
T Consensus 263 ~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnp 304 (528)
T COG0365 263 YKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNP 304 (528)
T ss_pred hCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCH
Confidence 123444555665555777888888887777875543
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=236.21 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=175.0
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-----CC--CceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCC
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-----LD--IPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEG 198 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-----~g--~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~ 198 (486)
+++||.+++||+++++++.+++++ +| ++++++||+||+++.++.......+++++|+|+||++++++|+++
T Consensus 333 ~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~~~-- 410 (614)
T PRK08180 333 FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPVGG-- 410 (614)
T ss_pred ccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecCCC--
Confidence 489999999999999999999886 23 789999999999877766555555789999999999999998754
Q ss_pred ccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeec----CCchhhhhHHH----h-HcCCeeeecCCCCCHH
Q psy2842 199 NGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFN----APEWFYSDLGA----I-YAGGFAAGMYTTNSPE 263 (486)
Q Consensus 199 ~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~----~~~~~~~~~g~----~-~~gg~~vpi~~~~~~~ 263 (486)
.|||.+ .||+++++.+++.|..+| |++|||++.. +.++++.++|. + ..||..+.+.|.+.+.
T Consensus 411 ~GEi~vrg~~v~~GY~~~p~~t~~~~~~dg---w~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~ 487 (614)
T PRK08180 411 KLEVRVKGPNVTPGYWRAPELTAEAFDEEG---YYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARA 487 (614)
T ss_pred CcEEEEecCccchhhcCChhHhHhhcccCC---ceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHH
Confidence 567765 489999999999987677 9999999997 45677777773 3 2577775555666666
Q ss_pred HHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 264 ACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 264 ~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
.+..+..+.++.++..+++. ...+++
T Consensus 488 ~l~~~p~V~~a~V~g~~~~~--------------~~a~V~---------------------------------------- 513 (614)
T PRK08180 488 VSAGAPLVQDVVITGHDRDE--------------IGLLVF---------------------------------------- 513 (614)
T ss_pred HhhcCchhheEEEEcCCCCc--------------eEEEEE----------------------------------------
Confidence 65566666666665554331 111111
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHH
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVY 423 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~ 423 (486)
......... .... . ..+... ..+...+.
T Consensus 514 ------------------~~~~~~~~~---~~~~-~---------~~~~~~---------------------~~~~~~l~ 541 (614)
T PRK08180 514 ------------------PNLDACRRL---AGLL-A---------DASLAE---------------------VLAHPAVR 541 (614)
T ss_pred ------------------cCHHHHHHH---Hhhc-c---------cCCHHH---------------------HhcCHHHH
Confidence 000000000 0000 0 000000 00112455
Q ss_pred HHHHHHHhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 424 KATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 424 ~~i~~~i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
+.+.+.+..++......+++++++.+++..+...+|.+|+++|++|+.|.++|+++|++||+
T Consensus 542 ~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~ 603 (614)
T PRK08180 542 AAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYA 603 (614)
T ss_pred HHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhC
Confidence 56666677776443444558999999999999999999999999999999999999999996
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=225.83 Aligned_cols=210 Identities=23% Similarity=0.369 Sum_probs=169.4
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
..+||++++++++++|..|.+.|+++|++|+++++|+.+|++.++||++.|++.||+++...++++.++++.++++++++
T Consensus 105 ~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~ 184 (696)
T PLN02387 105 EWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVIC 184 (696)
T ss_pred EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCC----------CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcC
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----------PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYT 349 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T 349 (486)
+++ ..+.+..+....+.+++++.+++.... ....+|+++...+...+.. .....++|+++|+||
T Consensus 185 ~~~-~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~dd~a~I~yT 258 (696)
T PLN02387 185 DSK-QLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVD-----PDLPSPNDIAVIMYT 258 (696)
T ss_pred CHH-HHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCC-----CCCCCccceEEEEec
Confidence 754 556666666777788888887653221 1134577766654322110 112457899999999
Q ss_pred CCCCCCCceeEechHHHHHHHHHHHHHc-cCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 350 SGTEGASKPVMLSHDNITFNAACIIQYF-KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 350 SGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|||||.||||++||+|+...+....... .+ ..+|++++++|++|+++..... ..+..|+++.+...
T Consensus 259 SGTTG~PKGV~lth~~l~~~~~~~~~~~~~~-~~~d~~l~~lPl~Hi~~~~~~~-~~~~~g~~i~~g~~ 325 (696)
T PLN02387 259 SGSTGLPKGVMMTHGNIVATVAGVMTVVPKL-GKNDVYLAYLPLAHILELAAES-VMAAVGAAIGYGSP 325 (696)
T ss_pred CCCCCCCCEEEEEcHHHHHHHHHHHhhcCCC-CCCCEEEEECcHHHHHHHHHHH-HHHHhCCEEEECCh
Confidence 9999999999999999998877665543 34 6789999999999999986543 35677888776443
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=220.65 Aligned_cols=214 Identities=24% Similarity=0.351 Sum_probs=167.7
Q ss_pred ceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEc
Q psy2842 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 280 (486)
Q Consensus 201 el~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~ 280 (486)
.+||+++.+++.++|..|.+.|+++|++|+++++|+.+|++.++|++..|++.||+++..+++++.++++.+++++++++
T Consensus 76 ~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~ 155 (660)
T PLN02430 76 WKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQ 155 (660)
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEEC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHhhcCCCCeEEEEecCCCCC---------CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCC
Q psy2842 281 DDKQLEKILKVKAQCPKLKAIVQYEGKPDK---------PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSG 351 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 351 (486)
+....+.+.......+.++.++.+++.... ....+|+++...+...+.. .....++++++|+||||
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~a~iiyTSG 230 (660)
T PLN02430 156 DKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSE-----TNPPKPLDICTIMYTSG 230 (660)
T ss_pred HHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCC-----CCCcCcCceEEEEECCC
Confidence 765544444333345567777776542110 1135677776655322111 11235789999999999
Q ss_pred CCCCCceeEechHHHHHHHHHHHHHc-----cCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHH
Q psy2842 352 TEGASKPVMLSHDNITFNAACIIQYF-----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421 (486)
Q Consensus 352 TTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~ 421 (486)
|||.||||++||+|+..++....... .+ ..+|++++++|++|+++.... +.++..|+++++...+...
T Consensus 231 TTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~-~~~d~~ls~lPl~H~~~~~~~-~~~l~~G~~i~~~~~~~~~ 303 (660)
T PLN02430 231 TSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKM-THDDVYLSFLPLAHILDRMIE-EYFFRKGASVGYYHGDLNA 303 (660)
T ss_pred CCCCCCEEEeecHHHHHHHHHHHhhccccccCC-CCCCEEEEeCcHHHHHHHHHH-HHHHHcCCEEEEeCCChhh
Confidence 99999999999999988766543321 33 578999999999999998764 4568899999876544333
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=221.21 Aligned_cols=278 Identities=19% Similarity=0.168 Sum_probs=198.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++.++.++|..|.+.|++++++|+++++|+.++++.++|++++| +++|+++....+++.++++.+++++++
T Consensus 56 ~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li 134 (632)
T PRK07529 56 PETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLV 134 (632)
T ss_pred CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999999999999999999999999999999998 678999999999999999999999999
Q ss_pred EcCh----hHHHHHHHHhhcCCCCeEEEEecCCCC----------------CCCcccHHHHHHhccCCCchhhHhhhccC
Q psy2842 279 VEDD----KQLEKILKVKAQCPKLKAIVQYEGKPD----------------KPGVISWDELMELGRAAPDESLDRVLETI 338 (486)
Q Consensus 279 ~~~~----~~~~~~~~~~~~~~~~~~iv~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (486)
++++ ...+++..+....+.++.++..+.... ..+...|.+.+........ ......
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 210 (632)
T PRK07529 135 TLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRL----FSGRPI 210 (632)
T ss_pred EeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCHHHHHhcCCCccc----cccCCC
Confidence 9754 234555556666777777776654321 1123455555443221100 001123
Q ss_pred CCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC
Q psy2842 339 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 418 (486)
Q Consensus 339 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~ 418 (486)
..+++++++|||||||.||||+++|+++..+.......+.+ .+++++++.+|++|+++....++.++..|+++++..+.
T Consensus 211 ~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~ 289 (632)
T PRK07529 211 GPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL-GPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQ 289 (632)
T ss_pred CcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCC-CCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCcc
Confidence 56899999999999999999999999999887777777776 67899999999999999988999999999999997642
Q ss_pred ---hHHHHHHHHHHHhhhh----------HHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 419 ---ALKVYKATQAAIDRAN----------LKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 419 ---~~~~~~~i~~~i~~~~----------~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
.......+.+.+++.+ +..+...+ .....+.+....+.+|+..+.- +.+. +.+.+...|-+.|+
T Consensus 290 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~~slr~v~~gg~~l~~~-l~~~-~~~~~g~~l~~~YG 366 (632)
T PRK07529 290 GYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP-VDGHDISSLRYALCGAAPLPVE-VFRR-FEAATGVRIVEGYG 366 (632)
T ss_pred ccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc-ccCCCccceEEEEEcCCCCCHH-HHHH-HHHHhCCcEeeeec
Confidence 1122333333333333 22333322 1222344445555666655542 2222 44445444555554
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-23 Score=214.62 Aligned_cols=280 Identities=14% Similarity=0.162 Sum_probs=196.0
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
+.++++ .+++||+++++.++++|..|.+.|++++++|+++++|+.++++.++|++++|++++|+++..+.+++.++
T Consensus 66 ~Al~~~----~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~ 141 (549)
T PRK07788 66 AALIDE----RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEV 141 (549)
T ss_pred eEEEEC----CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHH
Confidence 345553 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCC--CCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEE
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTL 346 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 346 (486)
++.+++++++++++ ..+.+..+....+.+..++...... ...+..+++++.......+ .....++.+++
T Consensus 142 l~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i 212 (549)
T PRK07788 142 AAREGVKALVYDDE-FTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAP--------LPKPPKPGGIV 212 (549)
T ss_pred HHhcCCcEEEECch-hHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCC--------CCCCCCCCcEE
Confidence 99999999999875 3333433333344444333222111 1134556666655332211 11235678999
Q ss_pred EcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHH
Q psy2842 347 VYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKA 425 (486)
Q Consensus 347 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~ 425 (486)
+|||||||.||||+++|+++..........+++ ..+++++..+|++|.+|+. .++.++..|+++++... ++....+.
T Consensus 213 ~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~~~~~~~~~ 290 (549)
T PRK07788 213 ILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPF-RAGETTLLPAPMFHATGWA-HLTLAMALGSTVVLRRRFDPEATLED 290 (549)
T ss_pred EECCCCCCCCCEEeccCccHHHHHHHHHhhCCC-CcCCeEEEccchHHHHHHH-HHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 999999999999999999999887777777777 6788999999999999984 56778999999988754 44444444
Q ss_pred HHHH------HhhhhHHHHhhhccc--ccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 426 TQAA------IDRANLKSISNAQKI--QKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 426 i~~~------i~~~~~~~l~~~~~i--~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
+.+. ..+..+..+.....- ....+.+......+|+..+. .+.+ .+.+++...+-+.|+
T Consensus 291 i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~-~~~~-~~~~~~~~~l~~~YG 356 (549)
T PRK07788 291 IAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSP-ELAT-RALEAFGPVLYNLYG 356 (549)
T ss_pred HHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCH-HHHH-HHHHHhCccceeccC
Confidence 4331 112223333333221 23334444555566655443 2222 245555555666664
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=214.95 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=162.3
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCC-----HHHHHHhhhhCCc
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS-----PEACLHCLVTSDA 274 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~-----~~~l~~~~~~~~~ 274 (486)
.++||+++.++++++|..|.+.|+++|++|+++++|+.+|++.++|++++|++.+|+++... .+++.++++.+++
T Consensus 68 ~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~ 147 (614)
T PRK08180 68 RRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTP 147 (614)
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCC
Confidence 57999999999999999999999999999999999999999999999999999999999988 7999999999999
Q ss_pred eEEEEcChhHHH-HHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCC
Q psy2842 275 NICVVEDDKQLE-KILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 353 (486)
Q Consensus 275 ~vvi~~~~~~~~-~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT 353 (486)
+++++++..... .+..... ... .++...+........+|.++........ .........++++++|+||||||
T Consensus 148 ~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~a~ilyTSGTT 221 (614)
T PRK08180 148 GLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVPGRAATPFAALLATPPTAA---VDAAHAAVGPDTIAKFLFTSGST 221 (614)
T ss_pred cEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCCCcccccHHHHhccccccc---hhhhccCCCcCceEEEEECCCCC
Confidence 999998753222 2211111 112 2333332211122356666654321110 01111124578999999999999
Q ss_pred CCCceeEechHHHHHHHHHHHHHccCC-CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 354 GASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 354 G~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
|.||||++||+++..+.......++.. ..++++++++|++|.+|+...++.++..|+++++.+
T Consensus 222 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~ 285 (614)
T PRK08180 222 GLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDD 285 (614)
T ss_pred CCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeC
Confidence 999999999999998877776666652 256899999999999998888899999999999875
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=211.91 Aligned_cols=223 Identities=18% Similarity=0.192 Sum_probs=173.6
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||.+++++++++|..|.+.|++++++|+++++|+.++++.++|+++.|+.++|++|..+.+++.++++.+++++++
T Consensus 53 ~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li 132 (547)
T PRK13295 53 PRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLV 132 (547)
T ss_pred cceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh----HHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHh--hhccCCCCceEEEEcCCCC
Q psy2842 279 VEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR--VLETIATNECCTLVYTSGT 352 (486)
Q Consensus 279 ~~~~~----~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGT 352 (486)
++++. ..+.+..+....+.++.++..+.. +..++.++.............. .......+++++++|||||
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGT 208 (547)
T PRK13295 133 VPKTFRGFDHAAMARRLRPELPALRHVVVVGGD----GADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGT 208 (547)
T ss_pred EeccccCcchHHHHHHHhhhCCCcceEEEecCC----CccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCC
Confidence 98752 223333344455666666655433 2234555443221000000000 0112456899999999999
Q ss_pred CCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 353 EGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 353 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
||.||||+++|+++..++......+++ ..++++++.+|++|.+++...++.++..|+++++.+. ++..+.+.+
T Consensus 209 TG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l 282 (547)
T PRK13295 209 TGEPKGVMHTANTLMANIVPYAERLGL-GADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELI 282 (547)
T ss_pred CCCCCEEEeccHHHHHHHHHHHHHhCC-CCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHH
Confidence 999999999999999888877777777 6789999999999999998999999999999998765 333344443
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=211.50 Aligned_cols=220 Identities=20% Similarity=0.247 Sum_probs=174.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++++.++++|..|.+.|++++++|+++++|+.++++.++|+++.|++++|+++..+++++.++++.+++++++
T Consensus 71 ~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii 150 (570)
T PRK04319 71 KEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLI 150 (570)
T ss_pred ceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCC-CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPD-KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
+++.... ... ....+.++.++..++... .++..++.+++........ .....++++++++|||||||.||
T Consensus 151 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~i~~TSGTTG~PK 221 (570)
T PRK04319 151 TTPALLE-RKP--ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFD------IEWTDREDGAILHYTSGSTGKPK 221 (570)
T ss_pred EChhhhh-ccc--hhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcCC------ccccCCCCCEEEEeCCCCCCCCC
Confidence 9875321 111 123455566665543321 2344566666554322110 11235688999999999999999
Q ss_pred eeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC--ChHHHHHHHHH
Q psy2842 358 PVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK--NALKVYKATQA 428 (486)
Q Consensus 358 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~--~~~~~~~~i~~ 428 (486)
||+++|+++..+.......+++ ..+|++++..|++|..|....++.++..|+++++... ++..+.+.+++
T Consensus 222 gV~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~ 293 (570)
T PRK04319 222 GVLHVHNAMLQHYQTGKYVLDL-HEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILED 293 (570)
T ss_pred EEEEecHHHHHHHHHHHHhcCC-CCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHH
Confidence 9999999999887777777777 6789999999999999988899999999999988743 44445444443
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=224.39 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=168.3
Q ss_pred CCceeEEEeccCCCCHHHHHHHHhC-------CCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCC
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLSL-------DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEG 198 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~~-------g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~ 198 (486)
+++||.+++||+++++++.++|+++ +++++++||+||++++++.......+.+++|+|+||+++++++.+ +
T Consensus 345 ~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~~G--~ 422 (624)
T PRK12582 345 FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAPVG--D 422 (624)
T ss_pred hhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEccCC--C
Confidence 3789999999999999999999873 378999999999987665444444578999999999999998643 2
Q ss_pred ccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeec-C---CchhhhhHHH----hH-cCCeeeecCCCCCH-
Q psy2842 199 NGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFN-A---PEWFYSDLGA----IY-AGGFAAGMYTTNSP- 262 (486)
Q Consensus 199 ~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~-~---~~~~~~~~g~----~~-~gg~~vpi~~~~~~- 262 (486)
.||+.+ .||+++++.+++.|..+| |+++||++.. + .++++.+.|. ++ .+|..+ +|...|
T Consensus 423 ~GEl~vrg~~v~~GY~~~p~~t~~~f~~dg---w~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i--~p~~iE~ 497 (624)
T PRK12582 423 KYEVRVKGPNVTPGYHKDPELTAAAFDEEG---FYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWV--SVGTLRP 497 (624)
T ss_pred ceEEEEECCcccccccCCccchhhhcCccC---CccccceEEecCCcCCCCceEEeccchhhEecCCCcEe--chHHHHH
Confidence 566665 589999999999887677 9999999986 3 4567777773 33 567763 444332
Q ss_pred -HHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCC
Q psy2842 263 -EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATN 341 (486)
Q Consensus 263 -~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (486)
..+..+..+.++.++..+++.. ..++.
T Consensus 498 e~~l~~~p~V~~a~VvG~~~~~~--------------g~lv~-------------------------------------- 525 (624)
T PRK12582 498 DAVAACSPVIHDAVVAGQDRAFI--------------GLLAW-------------------------------------- 525 (624)
T ss_pred HHHHhcCcchheEEEEcCCCCcE--------------EEEEe--------------------------------------
Confidence 3334444444544444333210 00000
Q ss_pred ceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHH
Q psy2842 342 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK 421 (486)
Q Consensus 342 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~ 421 (486)
.....+. .... ..+. + .+- . -+...
T Consensus 526 -------------------p~~~~~~----~~~~-----~~~~---------~-~~~---------------~--~~~~~ 550 (624)
T PRK12582 526 -------------------PNPAACR----QLAG-----DPDA---------A-PED---------------V--VKHPA 550 (624)
T ss_pred -------------------cCHHHHH----HHHh-----cCCC---------C-HHH---------------H--hcCHH
Confidence 0000000 0000 0000 0 000 0 01125
Q ss_pred HHHHHHHHHhhhhHHHHhhhc-ccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 422 VYKATQAAIDRANLKSISNAQ-KIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 422 ~~~~i~~~i~~~~~~~l~~~~-~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
+.+.+.+.+++.| ..+..++ +++++.+++..+...+|.+|+++|++|+.+.++|+++|++||+
T Consensus 551 l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~ 614 (624)
T PRK12582 551 VLAILREGLSAHN-AEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYA 614 (624)
T ss_pred HHHHHHHHHHHHH-hhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhc
Confidence 5566667788887 6777787 9999999999999999999999999999999999999999996
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=213.07 Aligned_cols=260 Identities=14% Similarity=0.139 Sum_probs=182.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++++++.++|..|.+.|+++|++|+++++|+.++++.++||.+.|++++|+++..+.+++.++++.+++++++
T Consensus 81 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li 160 (628)
T TIGR02316 81 ERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIV 160 (628)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh--------HHHHHHHHhhcC-CCCeEEEEecCCCCC-----CCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 279 VEDDK--------QLEKILKVKAQC-PKLKAIVQYEGKPDK-----PGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 279 ~~~~~--------~~~~~~~~~~~~-~~~~~iv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
+++.. ....+....... +...++++.+..... ....+|+++......... ......+++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a 235 (628)
T TIGR02316 161 SADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALRTQHEDAQV-----PVEWLESNEPS 235 (628)
T ss_pred ECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHHHhhccccCCC-----CceecCCCCcE
Confidence 97641 112222222221 234455555432111 123455555443211100 01123578999
Q ss_pred EEEcCCCCCCCCceeEechHHHHHH-HHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-----C
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-----N 418 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-----~ 418 (486)
+|+|||||||.||||+++|.++... .......+++ .++|++++.+|+.|..|....++.+|..|+++++.+. +
T Consensus 236 ~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~ 314 (628)
T TIGR02316 236 YILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGI-RAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPD 314 (628)
T ss_pred EEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCC-CCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCC
Confidence 9999999999999999999998643 3344455666 6789999999999999987889999999999998763 3
Q ss_pred hHHHHHHHHHH------HhhhhHHHHhhhc--ccccccccccceeecCCCCCCc
Q psy2842 419 ALKVYKATQAA------IDRANLKSISNAQ--KIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 419 ~~~~~~~i~~~------i~~~~~~~l~~~~--~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+..+.+.+.+. ..+..+..+...+ ......+........+|+..+.
T Consensus 315 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~ 368 (628)
T TIGR02316 315 PGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDE 368 (628)
T ss_pred HHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCH
Confidence 33444444331 1122233333322 1234445555566666765543
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=209.48 Aligned_cols=228 Identities=16% Similarity=0.184 Sum_probs=163.5
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
+.+.|.+ .+++||+++.++++++|..|.+ .+|++|+++++|+.++++.++|++++|++.+|+++..+.+++.++
T Consensus 36 ~a~~~~~---~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~ 109 (539)
T PRK06334 36 TVCWDEQ---LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTAC 109 (539)
T ss_pred eEEEeCC---CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHH
Confidence 4555532 3689999999999999999976 379999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCC-CCeEEEEecCCCCCCCcccHHHHHHhcc--CCCchhhHh--hhccCCCCce
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDKPGVISWDELMELGR--AAPDESLDR--VLETIATNEC 343 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~ 343 (486)
++.+++++++++++ ....+..+..... ....++..++.. ....+.+...... ..+...... ......++++
T Consensus 110 l~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 185 (539)
T PRK06334 110 ANLVGVTHVLTSKQ-LMQHLAQTHGEDAEYPFSLIYMEEVR---KELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDV 185 (539)
T ss_pred HHHcCCCEEEehHH-HHHHHhhhhhccccccccEEEEehhh---hhccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCE
Confidence 99999999999765 3333333222110 011233332211 1111111111000 000000000 0113457899
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC--ChHH
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK--NALK 421 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~--~~~~ 421 (486)
++|+|||||||.||||+++|+++..+.......+++ ..+|++++.+|++|.+|+...++.++..|+++++... ++..
T Consensus 186 a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~ 264 (539)
T PRK06334 186 AVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSP-KEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKK 264 (539)
T ss_pred EEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCC-CCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHH
Confidence 999999999999999999999999887777777777 6789999999999999988788899999999988642 4444
Q ss_pred HHHHHH
Q psy2842 422 VYKATQ 427 (486)
Q Consensus 422 ~~~~i~ 427 (486)
..+.+.
T Consensus 265 ~~~~i~ 270 (539)
T PRK06334 265 IVEMID 270 (539)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-22 Score=211.00 Aligned_cols=259 Identities=13% Similarity=0.127 Sum_probs=178.5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++++++.++|..|.+.|+++|++|+++++|++++++.++||.++|++.+|+++...++++..+++.+++++++
T Consensus 118 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li 197 (666)
T PLN02654 118 DASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVI 197 (666)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH--------HHHHHHHhhcC----CCCeEEEEecCCCC---------CCCcccHHHHHHhccCCCchhhHhhhcc
Q psy2842 279 VEDDKQ--------LEKILKVKAQC----PKLKAIVQYEGKPD---------KPGVISWDELMELGRAAPDESLDRVLET 337 (486)
Q Consensus 279 ~~~~~~--------~~~~~~~~~~~----~~~~~iv~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (486)
+++... .+.+....... .....++....... ......|+++...... ......
T Consensus 198 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 271 (666)
T PLN02654 198 TCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPT------KCEVEW 271 (666)
T ss_pred EcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCCC------CCCcee
Confidence 987521 11121111111 11112222221100 0011224444322110 001112
Q ss_pred CCCCceEEEEcCCCCCCCCceeEechHHHHHH-HHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 338 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
...+++++|+|||||||.||||+++|.+++.. .......+++ .++|++++.+|+.|+.|....++.+|..|+++++.+
T Consensus 272 ~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~ 350 (666)
T PLN02654 272 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDY-KPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFE 350 (666)
T ss_pred cCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCC-CCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEEC
Confidence 45789999999999999999999999998643 3445556677 678999999999999998888899999999999976
Q ss_pred C-----ChHHHHHHHHHH------HhhhhHHHHhhhc--ccccccccccceeecCCCCCCc
Q psy2842 417 K-----NALKVYKATQAA------IDRANLKSISNAQ--KIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 417 ~-----~~~~~~~~i~~~------i~~~~~~~l~~~~--~i~~~~l~p~~~~~~~g~ltpt 464 (486)
. ++..+.+.+.+. ..+..+..+.+.. ....+.+........+|+..+.
T Consensus 351 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~ 411 (666)
T PLN02654 351 GAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINP 411 (666)
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCH
Confidence 4 334444444331 1122233333321 1233445555555666765554
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=213.72 Aligned_cols=213 Identities=21% Similarity=0.305 Sum_probs=161.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++.++++++|..|.+.|++++++|+++++|+.+|++.++||++.|++.+|+++..+++++.++++.+++++++
T Consensus 119 ~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv 198 (700)
T PTZ00216 119 TRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIV 198 (700)
T ss_pred ceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhh--cCCCCeEEEEecCCCC-----CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCC
Q psy2842 279 VEDDKQLEKILKVKA--QCPKLKAIVQYEGKPD-----KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSG 351 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~--~~~~~~~iv~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 351 (486)
+++... ..+..... ..+.. .++..+.... .....+|+++...+...... ........++++++|+||||
T Consensus 199 ~~~~~~-~~l~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~iiyTSG 274 (700)
T PTZ00216 199 CNGKNV-PNLLRLMKSGGMPNT-TIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSH--HPLNIPENNDDLALIMYTSG 274 (700)
T ss_pred ECHHHH-HHHHHhhhhccCCce-EEEEECCCccccccCCceEEEHHHHHHhCCccccc--cccCCCCCcccEEEEEEeCC
Confidence 986633 33322222 12333 3444443211 12346788877665211100 01112345789999999999
Q ss_pred CCCCCceeEechHHHHHHHHHHHHHcc----CCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 352 TEGASKPVMLSHDNITFNAACIIQYFK----LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 352 TTG~PKgV~~sh~~l~~~~~~~~~~~~----~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
|||.||||+++|+|+.+++......+. ...+++++++++|++|+++... ....+..|+++++.+
T Consensus 275 TTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~~ 342 (700)
T PTZ00216 275 TTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFGS 342 (700)
T ss_pred CCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEECC
Confidence 999999999999999988776655431 1146789999999999998754 345578888887743
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=210.73 Aligned_cols=212 Identities=18% Similarity=0.226 Sum_probs=165.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++++.+.++|..|.+.|+++|++|+++++|++++++.++|++++|++.+|+++..+++++.++++.+++++++
T Consensus 86 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li 165 (625)
T TIGR02188 86 VRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVI 165 (625)
T ss_pred eEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh--------HHHHHHHHhhcCC-CCeEEEEecCCCCC-----CCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 279 VEDDK--------QLEKILKVKAQCP-KLKAIVQYEGKPDK-----PGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 279 ~~~~~--------~~~~~~~~~~~~~-~~~~iv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
+++.. ..+.+.......+ .++.+++....... .....|+++........ .......++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a 239 (625)
T TIGR02188 166 TADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWHDLMAKASAYC------EPEPMDSEDPL 239 (625)
T ss_pred EcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccHHHHHhhcCCCC------CceecCCCCce
Confidence 98752 1233344444455 56666655432111 12234555544321110 11234578999
Q ss_pred EEEcCCCCCCCCceeEechHHHHHHHHH-HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+|+|||||||.||||+++|.++...... ....+++ .++|++++.+|++|+.+....++.+|..|+++++.+.
T Consensus 240 ~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~ 312 (625)
T TIGR02188 240 FILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDI-KDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEG 312 (625)
T ss_pred EEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCC-CCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECC
Confidence 9999999999999999999998755433 3334566 6789999999999999887788999999999998753
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=207.58 Aligned_cols=210 Identities=17% Similarity=0.178 Sum_probs=163.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++..++.++|..|.+.|+++|++|+++++|++++++.++||.++|++.+|+++....+++.++++.+++++++
T Consensus 112 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li 191 (652)
T TIGR01217 112 PAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLF 191 (652)
T ss_pred eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh--------HHHHHHHHhhcCCCCeEEEEecCCC----C---CCCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 279 VEDDK--------QLEKILKVKAQCPKLKAIVQYEGKP----D---KPGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 279 ~~~~~--------~~~~~~~~~~~~~~~~~iv~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
+.+.. ..+.+.++....+.++.+++..... . ......|+++......... .......+++
T Consensus 192 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~ 266 (652)
T TIGR01217 192 TVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAEL-----VFEQLPFDHP 266 (652)
T ss_pred EccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccCCCC-----CceecCCCCC
Confidence 98752 2345555556667666666553211 0 0134556666543211110 0113456899
Q ss_pred EEEEcCCCCCCCCceeEechHHHHH-HHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITF-NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
++|+|||||||.||||+++|.++.. ........+++ .++|++++.+|+.|+.+. .++.+|..|+++++.+
T Consensus 267 ~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~ 337 (652)
T TIGR01217 267 LWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDL-GPGDRLFYYTTTGWMMWN--WLVSGLATGATLVLYD 337 (652)
T ss_pred EEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCC-CCCcEEEEeCCcchhhhH--HHHHHHhcCcEEEEEC
Confidence 9999999999999999999999754 33344445666 678999999999997532 3568999999999975
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=209.33 Aligned_cols=212 Identities=20% Similarity=0.260 Sum_probs=160.9
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCH-----HHHHHhhhhCCc
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP-----EACLHCLVTSDA 274 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~-----~~l~~~~~~~~~ 274 (486)
.++||+++++.++++|..|.+.|+++|++|+++++|+.+|++.++|+++.|++.+|++|..+. +++.++++.+++
T Consensus 79 ~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~ 158 (624)
T PRK12582 79 RKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKP 158 (624)
T ss_pred EEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999999999999875 899999999999
Q ss_pred eEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 275 NICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 275 ~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
+++++++............. ...+ ++..+.........++.++....... ..........++++++|+|||||||
T Consensus 159 ~~vi~~~~~~~~~~~~~~~~-~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~i~yTSGTTG 233 (624)
T PRK12582 159 RVVFAQSGAPFARALAALDL-LDVT-VVHVTGPGEGIASIAFADLAATPPTA---AVAAAIAAITPDTVAKYLFTSGSTG 233 (624)
T ss_pred cEEEecCHHHHHHHHHhhhh-cCce-EEEEcCCCcccccccHHHHhhcCCcc---hhhhhhccCCCCceEEEEEcCCCCC
Confidence 99999875332222222111 1222 33333322222334566655432111 1111112345789999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCC--CCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLES--AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~--~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
.||||+++|+++..+............ ..++.++++|++|.+|+...++.++..|+++++.+
T Consensus 234 ~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~ 297 (624)
T PRK12582 234 MPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297 (624)
T ss_pred CCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcC
Confidence 999999999999887766555444422 25799999999999998888889999999999875
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=211.70 Aligned_cols=216 Identities=13% Similarity=0.146 Sum_probs=157.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++++++.++|..|.+.|+++|++|+++++|++++++.++||.++|++.+|+++....+++.++++.+++++++
T Consensus 90 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li 169 (647)
T PTZ00237 90 TIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLII 169 (647)
T ss_pred eEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCh--------hHHHHHHHHhhcCC-CCeEEEEec-CCC-------------CCCCcccHHHHHHhccCCCchhhHhhh
Q psy2842 279 VEDD--------KQLEKILKVKAQCP-KLKAIVQYE-GKP-------------DKPGVISWDELMELGRAAPDESLDRVL 335 (486)
Q Consensus 279 ~~~~--------~~~~~~~~~~~~~~-~~~~iv~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (486)
+.+. ...+.+.++..... ...++++.. ... ..+....|++++.......... ....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 248 (647)
T PTZ00237 170 TTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSP-FYEY 248 (647)
T ss_pred EcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCC-CCCc
Confidence 9753 12222333322111 123444431 110 0123345666654321100000 0011
Q ss_pred ccCCCCceEEEEcCCCCCCCCceeEechHH-HHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEE
Q psy2842 336 ETIATNECCTLVYTSGTEGASKPVMLSHDN-ITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414 (486)
Q Consensus 336 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~ 414 (486)
.....+++++|+|||||||.||||+++|.+ +............. ..++++++..|+.|+.+. ..++.+|..|+++++
T Consensus 249 ~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~ 326 (647)
T PTZ00237 249 VPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEK-DIPTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVM 326 (647)
T ss_pred eeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCC-CCCcEEEEcCCCceEeeH-HHHHHHHhCCcEEEE
Confidence 234678999999999999999999999998 44333332333444 567899999999998654 357889999999998
Q ss_pred cCC
Q psy2842 415 ADK 417 (486)
Q Consensus 415 ~~~ 417 (486)
.+.
T Consensus 327 ~~~ 329 (647)
T PTZ00237 327 FEG 329 (647)
T ss_pred eCC
Confidence 764
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=210.38 Aligned_cols=258 Identities=17% Similarity=0.153 Sum_probs=178.2
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||+++.+++.++|..|.+.|+++|++|+++++|++++++.++|+.++|++++|++|..+.+++.++++.++++++++
T Consensus 207 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit 286 (728)
T PLN03052 207 NRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFT 286 (728)
T ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhH-----HHHHHHHhhcCCCCeEEEEecCCC--C----CCCcccHHHHHHhccCCC-chhhHhhhccCCCCceEEEE
Q psy2842 280 EDDKQ-----LEKILKVKAQCPKLKAIVQYEGKP--D----KPGVISWDELMELGRAAP-DESLDRVLETIATNECCTLV 347 (486)
Q Consensus 280 ~~~~~-----~~~~~~~~~~~~~~~~iv~~~~~~--~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~i~ 347 (486)
.+... .+....+...... .+++..... . .....+|++++....... ....+ ......+++++|+
T Consensus 287 ~d~~~~~gk~~~~~~~~~~~~~~--~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~a~Il 362 (728)
T PLN03052 287 QDVIVRGGKSIPLYSRVVEAKAP--KAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYK--AVEQPVEAFTNIL 362 (728)
T ss_pred cCccccCCcccchHHHHHHhcCC--cEEEEeCCCCccccccccCCccHHHHHhcccccccccccc--ccccCCCCcEEEE
Confidence 87421 1111111111111 122322111 0 112456777665432110 00001 0122468999999
Q ss_pred cCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC--hHHHHHH
Q psy2842 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN--ALKVYKA 425 (486)
Q Consensus 348 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~--~~~~~~~ 425 (486)
|||||||.||||+++|.+++.........+++ .++|+++...|+.|+++. ..++.+|..|+++++.+.. ...+.+.
T Consensus 363 yTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l-~~~d~~~~~~~l~w~~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~ 440 (728)
T PLN03052 363 FSSGTTGEPKAIPWTQLTPLRAAADAWAHLDI-RKGDIVCWPTNLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAKF 440 (728)
T ss_pred ecCCCCCCCceEEECchHHHHHHHHHHHhcCC-CCCcEEEECCCcHHHhHH-HHHHHHHHhCCEEEEeCCCCCCChHHHH
Confidence 99999999999999999987766655556677 678999999999999987 5678999999999998642 2233333
Q ss_pred HHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCC
Q psy2842 426 TQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGP 463 (486)
Q Consensus 426 i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltp 463 (486)
+++. ..+..+..+........+++.+.+....+|+..+
T Consensus 441 i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~ 484 (728)
T PLN03052 441 VQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASS 484 (728)
T ss_pred HHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCC
Confidence 3321 1122233333332223445555555556666443
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=208.58 Aligned_cols=215 Identities=22% Similarity=0.240 Sum_probs=168.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++..+++++..|.+.|++++++|++++.|+.++++.++|+++.|+.++|+++..+.+++.++++.+++++++
T Consensus 60 ~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li 139 (600)
T PRK08279 60 DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLI 139 (600)
T ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ..+.+..+.........++..++ ........+.++.......+.. ..........+++++|+|||||||.|||
T Consensus 140 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKg 216 (600)
T PRK08279 140 VGEE-LVEAFEEARADLARPPRLWVAGG-DTLDDPEGYEDLAAAAAGAPTT-NPASRSGVTAKDTAFYIYTSGTTGLPKA 216 (600)
T ss_pred EChH-HHHHHHHHhhhhcccceEEEecC-ccccccccHHHHhhhcccCCcc-CCCcccCCCccccEEEEEcCCCCCCCcE
Confidence 9875 34444444444333333333322 1111123344444332211110 0011123456889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++..++......+++ .++|++++.+|++|.+|+...++.++..|+++++.+.
T Consensus 217 V~~sh~~l~~~~~~~~~~~~l-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~ 274 (600)
T PRK08279 217 AVMSHMRWLKAMGGFGGLLRL-TPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRK 274 (600)
T ss_pred EEEeHHHHHHHHHHHHHhcCC-CCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCC
Confidence 999999999998888887887 6889999999999999998888889999999999765
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-22 Score=208.27 Aligned_cols=224 Identities=20% Similarity=0.212 Sum_probs=162.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++.+++.++|..|.+.|+++|++|+++++|+.+++..++|++++|++++|+++..+++++.++++.+++++++
T Consensus 30 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~ 109 (563)
T PLN02860 30 NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLV 109 (563)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHH-hhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCc-hhhHhhhccCCCCceEEEEcCCCCCCCC
Q psy2842 279 VEDDKQLEKILKV-KAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD-ESLDRVLETIATNECCTLVYTSGTEGAS 356 (486)
Q Consensus 279 ~~~~~~~~~~~~~-~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~P 356 (486)
++++.. .....+ ....+.++.++..++.... ....+.++......... ...........++++++++|||||||.|
T Consensus 110 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 187 (563)
T PLN02860 110 TDETCS-SWYEELQNDRLPSLMWQVFLESPSSS-VFIFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRP 187 (563)
T ss_pred Eecccc-hHHHHHhhccCCceeEEEEecCcccc-cccchhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCC
Confidence 987521 111111 1234444444444322110 11111111111000000 0000001123568999999999999999
Q ss_pred ceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 357 KPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 357 KgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
|||+++|+++..+.......+++ ..+|+++..+|++|.+|+. .++.++..|+++++.+. ++....+.+
T Consensus 188 KgV~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i 256 (563)
T PLN02860 188 KGVTISHSALIVQSLAKIAIVGY-GEDDVYLHTAPLCHIGGLS-SALAMLMVGACHVLLPKFDAKAALQAI 256 (563)
T ss_pred ceEEeehHHHHHHHHHHHhhcCC-CCCCEEEEecCchhhccHH-HHHHHHHcCceEEecCCCCHHHHHHHH
Confidence 99999999998777666666777 6789999999999999874 57889999999988754 333333333
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=220.14 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=163.5
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
..+||+++++++.++|..|.+.|+++|++|+++++|+++|++.++|++..|++.||+++. .+++.++++.++++++++
T Consensus 456 ~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv 533 (1452)
T PTZ00297 456 EWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFA 533 (1452)
T ss_pred eEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEE
Confidence 469999999999999999999999999999999999999999999999999999999864 678999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCC---CC-----CC--CcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEc-
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGK---PD-----KP--GVISWDELMELGRAAPDESLDRVLETIATNECCTLVY- 348 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~---~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~- 348 (486)
+++ ..+++.++.. +.+++++++++. .. .+ ..++|+++++.+..... .......++|++.|+|
T Consensus 534 ~~~-~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~----~~~~~~~~dDlatIiYt 606 (1452)
T PTZ00297 534 DRN-SVAAILTCRS--RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPV----PLKEHVTTDTVFTYVVD 606 (1452)
T ss_pred chh-HHHHHHhhcc--cCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCc----cccCCCCcccEEEEEec
Confidence 865 4455555432 368888887531 10 01 24679999887642211 1112346788999995
Q ss_pred --CCCCCCCCceeEechHHHHHHHHHHHHHc---cCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEc
Q psy2842 349 --TSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 415 (486)
Q Consensus 349 --TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~ 415 (486)
||||||.||||++||+|+.+++....... .. .++|++++++|++|+++.. ..+.++..|+++.+.
T Consensus 607 SyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~-~~~D~~Ls~LPLaHI~er~-~~~~~l~~G~~I~~~ 676 (1452)
T PTZ00297 607 NTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSS-FKKHLMVHFTPFAMLFNRV-FVLGLFAHGSAVATV 676 (1452)
T ss_pred CCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCC-CCCCEEEEechHHHHHHHH-HHHHHHHcCCEEEeC
Confidence 99999999999999999999888765432 22 4679999999999999964 456778999998754
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-24 Score=219.14 Aligned_cols=197 Identities=22% Similarity=0.280 Sum_probs=173.1
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
..++..+++.++. +.|+++.||.+++.+.+.
T Consensus 259 ~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~------------------------------------------------ 290 (537)
T KOG1176|consen 259 KFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS------------------------------------------------ 290 (537)
T ss_pred CCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC------------------------------------------------
Confidence 3477777888888 888888888888887664
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CC-CceeccccccccccccccCCCCC-CC
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LD-IPICEVFGMSECAGAHTVSAPDD-FK 176 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g-~~i~~~yG~TE~~~~~~~~~~~~-~~ 176 (486)
+....++|+++|.+.+||+|+++++.+++++ ++ ..+.++|||||+++.++.+...+ .+
T Consensus 291 -------------------p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k 351 (537)
T KOG1176|consen 291 -------------------PIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERK 351 (537)
T ss_pred -------------------CccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCc
Confidence 1234567799999999999999999999998 77 88999999999998888887665 48
Q ss_pred cCccccccCCceEEEECCCCC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH
Q psy2842 177 LDGVGRTIPGTQTKIVDPDEE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245 (486)
Q Consensus 177 ~~s~G~p~p~~~~~i~d~~~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g 245 (486)
++|+|+++++++.++.++.|. +.|||+++ ||++|++++++.|+++| |.+|||+++.|.|+++.+.+
T Consensus 352 ~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~G---W~~TGDiGy~D~DG~l~Ivd 428 (537)
T KOG1176|consen 352 PGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDG---WFHTGDLGYFDEDGYLYIVD 428 (537)
T ss_pred ccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCC---ccccCceEEEcCCCeEEEec
Confidence 999999999999999988776 68999975 99999999999998878 99999999999999998887
Q ss_pred ----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHHHH
Q psy2842 246 ----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKIL 289 (486)
Q Consensus 246 ----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~ 289 (486)
+++.||.. ++|.+.|+-|..++.+.+++|+..+|+.+++...
T Consensus 429 R~KdlIk~~G~q--v~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~ 474 (537)
T KOG1176|consen 429 RSKDLIKYGGEQ--VSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPA 474 (537)
T ss_pred chhhheeeCCEE--eCHHHHHHHHHhCCCccEEEEEcccccccCCcce
Confidence 89999999 7999999999999999999999999997766544
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-21 Score=200.06 Aligned_cols=221 Identities=18% Similarity=0.186 Sum_probs=176.3
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||+++++++.+++..|.+.|++++++|+++++|+.++++.++|++++|++.+|+++..+.+++.++++.++++++++
T Consensus 48 ~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~ 127 (547)
T PRK06087 48 ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA 127 (547)
T ss_pred CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCh----hHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 280 EDD----KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 280 ~~~----~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
++. ...+.+..+....+.++.++..+.........++.++........ .......+++++|+|||||||.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~a~i~~TSGTTG~ 201 (547)
T PRK06087 128 PTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLT------TAITTHGDELAAVLFTSGTEGL 201 (547)
T ss_pred ecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCccc------CCCCCCCCCeEEEEeCCCCCCC
Confidence 763 233444445556666666666654333333445555544322111 0113457899999999999999
Q ss_pred CceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHH
Q psy2842 356 SKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQ 427 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~ 427 (486)
||+|+++|.++..........+++ .+++++++.+|++|.+|+...++.++..|+++++... ++....+.+.
T Consensus 202 PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~ 273 (547)
T PRK06087 202 PKGVMLTHNNILASERAYCARLNL-TWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLE 273 (547)
T ss_pred CcEEEEecHHHHHHHHHHHHhcCC-CCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHH
Confidence 999999999998887777777777 6789999999999999998889999999999998765 3334444443
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=192.23 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=177.0
Q ss_pred ceehhhhHhhHHHHHHHHHHcCCcccce-EEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 201 EICLKEYEANVRTVAKAFLKLGLERYHS-VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 201 el~~~~y~~~~~~~a~~l~~~g~~~~~~-vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
-++|.+.+.+...++..|.+.|+++..+ +.+++..+.+|+...+||++.+..+|.++.++.++.+.+-+..+++..+++
T Consensus 89 w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T 168 (678)
T KOG1180|consen 89 WMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFT 168 (678)
T ss_pred eecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEe
Confidence 3567788899999999999999997666 999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCC-------------CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEE
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDK-------------PGVISWDELMELGRAAPDESLDRVLETIATNECCTL 346 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 346 (486)
+.+ .+..+.......+.++++|.++..... -..++|++++..+..... ...++.++|+|+|
T Consensus 169 ~~~-LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~-----~~~~P~p~Dia~I 242 (678)
T KOG1180|consen 169 DSE-LLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEI-----PPHPPKPSDIACI 242 (678)
T ss_pred CHH-HHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCC-----CCCCCCCCceEEE
Confidence 887 556888888999999999988742111 235688999988876531 1224468999999
Q ss_pred EcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 347 VYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 347 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+|||||||.||||+++|.|+++.+.............|+++.++||.|++-+... +.++..|+++-..++
T Consensus 243 MYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE-~~~ft~G~~iGY~S~ 312 (678)
T KOG1180|consen 243 MYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAE-LVCFTWGGRIGYSSP 312 (678)
T ss_pred EEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHH-HHHHhhCCEeecCCc
Confidence 9999999999999999999999888877776544789999999999999998765 456778888766543
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=203.70 Aligned_cols=209 Identities=20% Similarity=0.300 Sum_probs=164.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHc-CCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~-g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||.++.+++.+++..|.+. |++++++|+++++++.++++.++|+++.|++++|+++..+.+++.++++.++++++
T Consensus 33 ~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 112 (546)
T PRK08314 33 GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVA 112 (546)
T ss_pred CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEE
Confidence 35799999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCC-----------------------CCCcccHHHHHHhccCCCchhhHhh
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD-----------------------KPGVISWDELMELGRAAPDESLDRV 334 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (486)
++++.. ...+....... .++.+++...... ..+...|++........ .
T Consensus 113 i~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 183 (546)
T PRK08314 113 IVGSEL-APKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAP-------P 183 (546)
T ss_pred EEccch-hhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccccccccccccccccHHHHhcccCCC-------C
Confidence 998763 33333332222 1233333210000 01223444443321110 1
Q ss_pred hccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEE
Q psy2842 335 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414 (486)
Q Consensus 335 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~ 414 (486)
......+++++++|||||||.||||+++|+++..++......+++ ..+|++++.+|++|++|+...++.++..|+++++
T Consensus 184 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~ 262 (546)
T PRK08314 184 PHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNS-TPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVL 262 (546)
T ss_pred CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCC-CCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEe
Confidence 113457899999999999999999999999999988887777777 7889999999999999998999999999999999
Q ss_pred cCC
Q psy2842 415 ADK 417 (486)
Q Consensus 415 ~~~ 417 (486)
.+.
T Consensus 263 ~~~ 265 (546)
T PRK08314 263 MPR 265 (546)
T ss_pred cCC
Confidence 875
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=209.13 Aligned_cols=212 Identities=18% Similarity=0.241 Sum_probs=165.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++++.+.++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 96 ~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li 175 (637)
T PRK00174 96 SRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVI 175 (637)
T ss_pred eEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH--------HHHHHHHhhcCCCCeEEEEecCCCCC-----CCcccHHHHHHhccCCCchhhHhhhccCCCCceEE
Q psy2842 279 VEDDKQ--------LEKILKVKAQCPKLKAIVQYEGKPDK-----PGVISWDELMELGRAAPDESLDRVLETIATNECCT 345 (486)
Q Consensus 279 ~~~~~~--------~~~~~~~~~~~~~~~~iv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 345 (486)
+++... .+.+.......+.++.+++.+..... .....++++......... ......+++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~a~ 249 (637)
T PRK00174 176 TADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVAGASDECE------PEPMDAEDPLF 249 (637)
T ss_pred EcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHHHhhcCCCCC------ccccCCCCcEE
Confidence 976521 23333344445566666665432111 123345555443211100 11345789999
Q ss_pred EEcCCCCCCCCceeEechHHHHHHHHH-HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 346 LVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 346 i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+|||||||.||||+++|+++..+... ....+++ ..+|++++.+|++|..+....++.+|..|+++++.+.
T Consensus 250 i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 321 (637)
T PRK00174 250 ILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDY-KDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEG 321 (637)
T ss_pred EEECCCCCCCCceEEeCcchhHHHHHHHHHhccCC-CCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECC
Confidence 999999999999999999998755443 3334566 5689999999999999988889999999999998653
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=202.84 Aligned_cols=264 Identities=22% Similarity=0.335 Sum_probs=188.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++.+++.+++..|.+.|++++++|+++++++.++++.++|+++.|++++|++|..+.+++..+++.+++++++
T Consensus 41 ~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii 120 (559)
T PRK08315 41 GLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALI 120 (559)
T ss_pred CeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH----HHHHHHHhhc-------------CCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCC
Q psy2842 279 VEDDKQ----LEKILKVKAQ-------------CPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATN 341 (486)
Q Consensus 279 ~~~~~~----~~~~~~~~~~-------------~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (486)
+++... .+.+...... .+..+.++..+.. ...+...+.++.....................+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (559)
T PRK08315 121 AADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE-KHPGMLNFDELLALGRAVDDAELAARQATLDPD 199 (559)
T ss_pred EeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeeccc-CCcccccHHHHHhhccccccccccchhccCCCC
Confidence 986421 2222221111 1334444444332 223445666665443222211111112234578
Q ss_pred ceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC--Ch
Q psy2842 342 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK--NA 419 (486)
Q Consensus 342 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~--~~ 419 (486)
++++++|||||||.||+|.++|+++..++......+++ ..+++++..+|++|.+|+...++.++..|+++++... ++
T Consensus 200 ~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 278 (559)
T PRK08315 200 DPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL-TEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDP 278 (559)
T ss_pred CcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCC-CCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCH
Confidence 89999999999999999999999999888888888888 6789999999999999999999999999999985432 44
Q ss_pred HHHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 420 LKVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 420 ~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+.+.+.+. ..+..+..+...+......+.+....+.+|+..+.
T Consensus 279 ~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~ 329 (559)
T PRK08315 279 LATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPI 329 (559)
T ss_pred HHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCH
Confidence 4444444331 11122233333333333444444444556665553
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=201.04 Aligned_cols=253 Identities=19% Similarity=0.273 Sum_probs=180.3
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||.+++.+++++|..|.+.|++++++|+++++++.++++.++|+++.|++.+|+++..+.+++..+++.++++++++
T Consensus 49 ~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~ 128 (537)
T PLN02246 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIIT 128 (537)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
++. ..+.+..+... +.+ .++..+... ....++.++....... .+ .....++++++++|||||||.||||
T Consensus 129 ~~~-~~~~~~~~~~~-~~~-~~i~~~~~~--~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~i~~TSGtTG~PKgv 197 (537)
T PLN02246 129 QSC-YVDKLKGLAED-DGV-TVVTIDDPP--EGCLHFSELTQADENE----LP--EVEISPDDVVALPYSSGTTGLPKGV 197 (537)
T ss_pred ccc-hHHHHHHHhhc-CCc-eEEEeCCCC--CCceeHHHHhcCCCCC----CC--CCCCCccCEEEEEeCCCCCCCCceE
Confidence 876 33333333321 222 233333321 2334444443321110 00 1123578999999999999999999
Q ss_pred EechHHHHHHHHHHHH----HccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH-----
Q psy2842 360 MLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA----- 429 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~----- 429 (486)
+++|+++......... .+.+ ..+|++++.+|++|.+++...++.++..|+++++.+. ++..+.+.+.+.
T Consensus 198 ~~s~~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~ 276 (537)
T PLN02246 198 MLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIA 276 (537)
T ss_pred EEeHHHHHHHHHHHhhccccccCC-CCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEE
Confidence 9999999877665433 3445 6789999999999999988888899999999999876 333333333321
Q ss_pred -HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 -IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 -i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+...+......+....+...+|+..+.
T Consensus 277 ~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~ 312 (537)
T PLN02246 277 PFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGK 312 (537)
T ss_pred EcchHHHHHHhcCccccccCccceeEEEEecCcCCH
Confidence 11222334444433333344444455566665543
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=202.25 Aligned_cols=225 Identities=18% Similarity=0.199 Sum_probs=173.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++++.+.++|..|.+.|++++++|++++.++.++++.++|+++.|+.++|+++..+.+++.++++.+++++++
T Consensus 51 ~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li 130 (538)
T TIGR03208 51 VRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFV 130 (538)
T ss_pred cceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH----HHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhh--HhhhccCCCCceEEEEcCCCC
Q psy2842 279 VEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESL--DRVLETIATNECCTLVYTSGT 352 (486)
Q Consensus 279 ~~~~~~----~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGT 352 (486)
+++... ...........+..+.+++.++. +...++.++........... .........+++++++|||||
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGt 206 (538)
T TIGR03208 131 VPSVFRGFDHAAMARELQSKLPALRQVVVIDGD----GDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGT 206 (538)
T ss_pred EccccccccHHHHHHHHhccCCcceEEEEecCC----CCcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCC
Confidence 977521 22333334445555566665432 12234444332211100000 000113457899999999999
Q ss_pred CCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHH
Q psy2842 353 EGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQA 428 (486)
Q Consensus 353 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~ 428 (486)
||.||||+++|+++...+......+++ ..++++++.+|++|.+|+...++.++..|+++++.+. ++....+.+.+
T Consensus 207 TG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~ 282 (538)
T TIGR03208 207 TGEPKGVMHTANTLFSNIHPYAERLEL-GGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRE 282 (538)
T ss_pred CCCCcEEEeehHHHHHHHHHHHhhcCC-CCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHH
Confidence 999999999999999888877777777 6789999999999999998889999999999988765 34444444433
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-21 Score=198.84 Aligned_cols=277 Identities=19% Similarity=0.268 Sum_probs=197.2
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||.++++.+.+++..|.+.|++++++|+++++++.++++.++|++..|++++|+++..+.+++..+++.+++++++
T Consensus 28 ~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii 107 (513)
T PRK07656 28 DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALF 107 (513)
T ss_pred CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCC---CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK---PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
+++.. ...........+.++.++........ ....+|+++........ .......+++++++|||||||.
T Consensus 108 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~i~~TSGtTG~ 180 (513)
T PRK07656 108 VLGLF-LGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAE------RAPEVDPDDVADILFTSGTTGR 180 (513)
T ss_pred Echhh-HHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCC------CcCCCCCCceEEEEeCCCCCCC
Confidence 98763 23333344455556655554332221 12345666655432210 1123457889999999999999
Q ss_pred CceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH-----
Q psy2842 356 SKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA----- 429 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~----- 429 (486)
||+|.++|.++...+......+++ ..++++++.+|++|.+++...++.++..|+++++... ++..+.+.+.+.
T Consensus 181 PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~ 259 (513)
T PRK07656 181 PKGAMLTHRQLLSNAADWAEYLGL-TEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVL 259 (513)
T ss_pred CCEEEEecHHHHHHHHHHHHhhCC-CCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEE
Confidence 999999999999888877777777 6789999999999999998889999999999988654 333444443331
Q ss_pred -HhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHH-HHHhhhc
Q psy2842 430 -IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS-IIDKFYD 485 (486)
Q Consensus 430 -i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~-~I~~lY~ 485 (486)
..+..+..+.....-....+.+....+.+|+..+. .+.+ .+.++|.. .+-++|+
T Consensus 260 ~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~-~~~~-~~~~~~~~~~~~~~YG 315 (513)
T PRK07656 260 PGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPV-ALLE-RFESELGVDIVLTGYG 315 (513)
T ss_pred echHHHHHHHHcCCCcCCCCccceeeEEecCCCCCH-HHHH-HHHHHcCCCceEeEEc
Confidence 11222333443332222233344444555655443 2222 24444443 3444453
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-21 Score=201.29 Aligned_cols=216 Identities=22% Similarity=0.324 Sum_probs=167.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||.++++++.+++..|.+.|++++++|+++++++.++++.++|+++.|+..+|+++..+.+++.+++..+++++++
T Consensus 43 ~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii 122 (558)
T PRK12583 43 ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVI 122 (558)
T ss_pred CcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh----HHHHHHHHh-------------hcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCC
Q psy2842 279 VEDDK----QLEKILKVK-------------AQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATN 341 (486)
Q Consensus 279 ~~~~~----~~~~~~~~~-------------~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (486)
+.+.. ....+.... ...+.+..++..... ..+....|++....+.................+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (558)
T PRK12583 123 CADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA-PPPGFLAWHELQARGETVSREALAERQASLDRD 201 (558)
T ss_pred EeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC-CCccccchHhhhhcccccccccccccccccCCC
Confidence 87642 112221111 112333444443322 223445566655443322221111112234578
Q ss_pred ceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 342 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 342 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
++++++|||||||.||||+++|+++..++......+++ ..+|++++.+|++|.+|....++.++..|+++++..
T Consensus 202 ~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~ 275 (558)
T PRK12583 202 DPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGL-TEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPN 275 (558)
T ss_pred CcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCC-CCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeec
Confidence 89999999999999999999999999888877777777 678999999999999999999999999999998754
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=206.35 Aligned_cols=211 Identities=19% Similarity=0.219 Sum_probs=163.5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.+.+.++|..|.+.|+++|++|+++++|++++++.++||+++|++.+|+++..+.+++.+.++.+++++++
T Consensus 112 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li 191 (655)
T PRK03584 112 RRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLI 191 (655)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh--------HHHHHHHHhhcCCCCeEEEEecCCC------CCCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 279 VEDDK--------QLEKILKVKAQCPKLKAIVQYEGKP------DKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 279 ~~~~~--------~~~~~~~~~~~~~~~~~iv~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
+++.. ..+.+..+....+.++.+++..... .......|++++........ .......++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a 266 (655)
T PRK03584 192 AVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEAAEL-----EFEPVPFDHPL 266 (655)
T ss_pred EccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhccccCCC-----CceecCCCCcE
Confidence 98752 1234444555566666666554221 11234566666542211110 01234578999
Q ss_pred EEEcCCCCCCCCceeEechHHHHHH-HHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+|+|||||||.||||+++|.++..+ .......+++ .++|++++..++.|..+. .++.+|..|+++++.+.
T Consensus 267 ~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~ 337 (655)
T PRK03584 267 WILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDL-GPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDG 337 (655)
T ss_pred EEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCC-CCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCC
Confidence 9999999999999999999987644 4444555666 678999999999887542 36688999999998753
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=201.22 Aligned_cols=210 Identities=20% Similarity=0.239 Sum_probs=163.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCC-cccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~-~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||.++.++++++|..|.+.|+ .++++|+++++|+.++++.++|++++|++++|++|..+.+++.+++..++++++
T Consensus 24 ~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~ 103 (540)
T PRK13388 24 DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLL 103 (540)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEE
Confidence 4689999999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
+++++. .+.+..+ ..+.++.++ .+. ..+.+++.......+ .....++++++++|||||||.||
T Consensus 104 i~~~~~-~~~~~~~--~~~~~~~i~-~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~a~i~~TSGTTG~PK 166 (540)
T PRK13388 104 VTDAEH-RPLLDGL--DLPGVRVLD-VDT-------PAYAELVAAAGALTP------HREVDAMDPFMLIFTSGTTGAPK 166 (540)
T ss_pred EEChhh-hHHHHhh--cccCceEEE-ccc-------hhhhhhhccccCcCC------CCCCCCCCeEEEEECCCCCCCCC
Confidence 997653 2232222 123333332 221 123333321111100 01245789999999999999999
Q ss_pred eeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 358 PVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 358 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
||+++|+++..........+++ ..+|+++..+|++|.+++...++.++..|+++++.+. ++....+.+
T Consensus 167 gv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i 235 (540)
T PRK13388 167 AVRCSHGRLAFAGRALTERFGL-TRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDV 235 (540)
T ss_pred EEEecHHHHHHHHHHHHHHhCC-CCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHH
Confidence 9999999999888877788887 6789999999999999987777788999999998764 333333333
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-22 Score=214.32 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=155.7
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
+.+||+++.++++++|..|.+. +++|++|+++++|++++++.++|+++.|++.+|+++...++++.++++.++++++++
T Consensus 230 ~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~ 308 (718)
T PRK08043 230 TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFT 308 (718)
T ss_pred CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEE
Confidence 5799999999999999999776 589999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHH--HHHhhcCCCCeEEEEecCCCCCCCcccHHHHH--HhccCCCchhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 280 EDDKQLEKI--LKVKAQCPKLKAIVQYEGKPDKPGVISWDELM--ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 280 ~~~~~~~~~--~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
+++. .+.. .......+.+..+ ..++.. ....+.+.. ......+. .......++++++++|||||||.
T Consensus 309 ~~~~-~~~~~~~~~~~~~~~~~~i-~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~i~~TSGTTG~ 379 (718)
T PRK08043 309 SRQF-LDKGKLWHLPEQLTQVRWV-YLEDLK---DDVTTADKLWIFAHLLMPR----LAQVKQQPEDAALILFTSGSEGH 379 (718)
T ss_pred cHHH-HhhccCCChhhhhccccEE-Ehhhhh---hhcchhHHHHHHHHHhCCc----cccCCCCCCCeEEEEECCCCCCC
Confidence 7652 2110 0111112222222 222110 011111100 00000000 00012356899999999999999
Q ss_pred CceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 356 SKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||||+++|+++..........+++ ..+|++++.+|++|.+|+...++.++..|+++++.+.
T Consensus 380 PKgv~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~ 440 (718)
T PRK08043 380 PKGVVHSHKSLLANVEQIKTIADF-TPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS 440 (718)
T ss_pred CCEEEEcHHHHHHHHHHHHHhhCC-CccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC
Confidence 999999999999888777777777 6789999999999999998889999999999998764
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=198.40 Aligned_cols=220 Identities=20% Similarity=0.228 Sum_probs=165.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++++++++|..|.+.|++++++|+++++|+.++++.++|++++|++.+|+++..+.+++..+++.+++++++
T Consensus 44 ~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~ 123 (542)
T PRK06155 44 GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLV 123 (542)
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ....+.......+.++.++..+..........|.... ...... ........++++++++|||||||.|||
T Consensus 124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~a~il~TSGTTG~PK~ 197 (542)
T PRK06155 124 VEAA-LLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAP-LPPLDA----PAPAAAVQPGDTAAILYTSGTTGPSKG 197 (542)
T ss_pred EChh-hHHHHHHhcccccCcceEEEecCccccccccccchhh-hcccCC----CCCCCCCCCCCeEEEEECCCCCCCCcE
Confidence 9765 3334433333333344555554332100011111100 000000 000112356889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
|+++|.++..........+++ ..++++++.+|++|..++. .++.++..|+++++.+. ++..+...+
T Consensus 198 V~~t~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~l 264 (542)
T PRK06155 198 VCCPHAQFYWWGRNSAEDLEI-GADDVLYTTLPLFHTNALN-AFFQALLAGATYVLEPRFSASGFWPAV 264 (542)
T ss_pred EEEEHHHHHHHHHHHHHhcCC-CCCCEEEEecCHHHHHHHH-HHHHHHHcCceEEeeCCCCHHHHHHHH
Confidence 999999998877777777777 6789999999999999875 56889999999988765 233333333
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=187.87 Aligned_cols=214 Identities=23% Similarity=0.223 Sum_probs=168.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||++....+.+.|+.|..+|++.||.|++++.|.++++...+|+.+.|.+...||+...-+.+.|.+..+++++++
T Consensus 102 ~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv 181 (649)
T KOG1179|consen 102 FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALV 181 (649)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCe-EEEEecCCCCCCCcccHHHHHHhccCCCchhhH-hhhccCCCCceEEEEcCCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLK-AIVQYEGKPDKPGVISWDELMELGRAAPDESLD-RVLETIATNECCTLVYTSGTEGAS 356 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~-~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~P 356 (486)
++.+ ..+.+..+........ +++..+.....++..++...++.. +....+ .........++++.+|||||||.|
T Consensus 182 ~~~e-l~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~---~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLP 257 (649)
T KOG1179|consen 182 VGPE-LLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAA---PKHPVPVSTRSGLTFRSPLLYIYTSGTTGLP 257 (649)
T ss_pred ECHH-HHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhccc---ccCCCCcccCCCccccceeEEEEcCCCCCCC
Confidence 9877 3333343322211111 122222222223333333333322 222111 222344567889999999999999
Q ss_pred ceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 357 KPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 357 KgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+.+++|.-....+......+++ +++|+++..+|++|.+|.+.++..++..|+|+++..+
T Consensus 258 KaAvith~r~~~~a~g~~~~~g~-~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkK 317 (649)
T KOG1179|consen 258 KAAVITHLRYLQGAAGFYYVFGM-TADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKK 317 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecc
Confidence 99999999999888888888999 8899999999999999999999999999999999876
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=202.21 Aligned_cols=213 Identities=15% Similarity=0.130 Sum_probs=161.5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++.+++.++|..|.+.|+++|++|+++++|+.++++.++||+++|++.+|+++....+++.+++..+++++++
T Consensus 82 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li 161 (629)
T PRK10524 82 ERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIV 161 (629)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh--------HHHHHHHHhhcC-CCCeEEEEecCCCC-----CCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 279 VEDDK--------QLEKILKVKAQC-PKLKAIVQYEGKPD-----KPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 279 ~~~~~--------~~~~~~~~~~~~-~~~~~iv~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
+.+.. ..+.+..+.... +....+++.+.... ......+.++......... .......++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~a 236 (629)
T PRK10524 162 SADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARV-----PVEWLESNEPS 236 (629)
T ss_pred EccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHHHHHhcCCCCCC-----CceeeCCCCce
Confidence 87641 122233222222 23344555543211 0122345555433211100 01123568899
Q ss_pred EEEcCCCCCCCCceeEechHHHHHHHHH-HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+|+|||||||.||||+++|.++...... ....+++ .++|++++..|+.|..+....++.++..|+++++.+.
T Consensus 237 ~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g 309 (629)
T PRK10524 237 YILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGG-KAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEG 309 (629)
T ss_pred EEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCC-CCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECC
Confidence 9999999999999999999997644333 3444566 6789999999999998887888999999999988753
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=197.92 Aligned_cols=205 Identities=16% Similarity=0.148 Sum_probs=160.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||.++.+.++++|..|.+.|++++++|+++++|+.+++..++|+++.|+.++|+++..+.+++.++++.+++++++
T Consensus 66 ~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 145 (537)
T PRK13382 66 LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVI 145 (537)
T ss_pred CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++.+ ....+.......+....++...+.. ....++++........ .....++.++++|||||||.|||
T Consensus 146 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~il~TSGTTG~PKg 213 (537)
T PRK13382 146 YDEE-FSATVDRALADCPQATRIVAWTDED---HDLTVEVLIAAHAGQR--------PEPTGRKGRVILLTSGTTGTPKG 213 (537)
T ss_pred Echh-hHHHHHHHHhhccccceEEEecCCc---ccccHHHHhhccCcCC--------CCCCCCCCeEEEECCCCCCCCCE
Confidence 9865 3333333333333333333332211 1233444433211100 01235778999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|.++..........+.+ ..+++++..+|++|.+|+ ..++.++..|+++++...
T Consensus 214 v~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~~~ 270 (537)
T PRK13382 214 ARRSGPGGIGTLKAILDRTPW-RAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTRRR 270 (537)
T ss_pred EEeccchHHHHHHHHHHhhCC-CCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEECCC
Confidence 999999988777776666666 578899999999999987 567888999999988654
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=193.22 Aligned_cols=252 Identities=23% Similarity=0.293 Sum_probs=176.2
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||++++++++++|..|.+.|++++++|+++++|+.++++.++|++++|++++|++|..+.+++.++++.+++++++
T Consensus 19 ~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii 98 (417)
T PF00501_consen 19 GRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVII 98 (417)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEE
T ss_pred CEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccccccccccccccccceeEEE
Confidence 68999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred E----cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhcc-CCCCceEEEEcCCCCC
Q psy2842 279 V----EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET-IATNECCTLVYTSGTE 353 (486)
Q Consensus 279 ~----~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~i~~TSGTT 353 (486)
+ +... ...+............++..+....... +.+.......... .. ..++++++++||||||
T Consensus 99 ~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~i~~TSGTT 167 (417)
T PF00501_consen 99 TSEAVDSEP-LKKLKSIFKQEDPSSSIIILDRDDLPKK----EALKSASLSDEPQ------SPEDSPDDPAFILFTSGTT 167 (417)
T ss_dssp ECHHHSCHH-HHHHHHHHTTSTTTEEEEEESHSSCTTC----HHHHHHHHCHCSH------STTHTTTSEEEEEEESSSS
T ss_pred Eeccccccc-cccchhhhcccccccccccccccccccc----ccccccccccccc------cCCCCccceeEeecccccc
Confidence 7 3333 4445555554444455555543332111 0011000000000 00 0468999999999999
Q ss_pred CCCceeEechHHHHHHHHHHH--HHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHHHHHHHHHh
Q psy2842 354 GASKPVMLSHDNITFNAACII--QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQAAID 431 (486)
Q Consensus 354 G~PKgV~~sh~~l~~~~~~~~--~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~~i~ 431 (486)
|.||+|.++|+++...+..+. ...+. . |++++.+|++|.+|+...++.++..|+++++.+.......+.+.+.++
T Consensus 168 G~pK~v~~t~~~~~~~~~~~~~~~~~~~-~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~ 244 (417)
T PF00501_consen 168 GKPKGVVLTHRNLLAQARALALPEYFGL-G--DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELIS 244 (417)
T ss_dssp SSEEEEEEEHHHHHHHHHHHHHHHTTTT-T--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccc-C--ceEEeeccccccccccccccccccccccccccccccccccccchhccc
Confidence 999999999999998877754 12222 1 599999999999999899999999999999998744311222333333
Q ss_pred ----------hhhHHHHhhhcccc----cccccccceeecCCCCCCc
Q psy2842 432 ----------RANLKSISNAQKIQ----KFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 432 ----------~~~~~~l~~~~~i~----~~~l~p~~~~~~~g~ltpt 464 (486)
+..+..+.+.++.. ...+.+....+.+|+..+.
T Consensus 245 ~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~ 291 (417)
T PF00501_consen 245 RYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPP 291 (417)
T ss_dssp HHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCh
Confidence 22344555433332 2345555554456654443
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-21 Score=199.88 Aligned_cols=214 Identities=17% Similarity=0.281 Sum_probs=160.0
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
+.++|.++ ..++||+++..+++++|..|.+ .|++++++|++++.|+.++++.++|+++.|++++|++|..+.+++.+
T Consensus 56 ~a~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~ 133 (560)
T PLN02574 56 TALIDSST--GFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKK 133 (560)
T ss_pred CEEEECCC--CCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHH
Confidence 44555332 2379999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCC----CCCCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP----DKPGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
++..+++++++++++ ..+.+... ... ++...+.. ......+|.++......... .....++++
T Consensus 134 ~l~~~~~~~~~~~~~-~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 200 (560)
T PLN02574 134 RVVDCSVGLAFTSPE-NVEKLSPL-----GVP-VIGVPENYDFDSKRIEFPKFYELIKEDFDFVP------KPVIKQDDV 200 (560)
T ss_pred HHHhcCCEEEEECHH-HHHHHHhc-----CCc-EEecCcccccccCccCcccHHHHhhcCCcccc------cCCCCcCCE
Confidence 999999999999865 22222211 111 22221110 01123345554443221110 112356889
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHHHHHHH----ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
++++|||||||.||||+++|+++...+...... ......+++++..+|++|++|+...++.++..|+++++.+.
T Consensus 201 a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~ 278 (560)
T PLN02574 201 AAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRR 278 (560)
T ss_pred EEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecC
Confidence 999999999999999999999998876655432 22223568899999999999998888888999999988765
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=197.67 Aligned_cols=281 Identities=18% Similarity=0.214 Sum_probs=186.0
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.+.++++|..|.+.|++++++|+++++|+.++++.++|+++.|++++|++|..+.+++.+++..+++++++
T Consensus 55 ~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 134 (573)
T PRK05605 55 GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAI 134 (573)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCC--------------------------CCCCCcccHHHHHHhccCCCchhhH
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGK--------------------------PDKPGVISWDELMELGRAAPDESLD 332 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (486)
+.++. ...+..+.... ..+.++..+.. ...++..+|.++.......... .
T Consensus 135 ~~~~~-~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 210 (573)
T PRK05605 135 VWDKV-APTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGS--D 210 (573)
T ss_pred echhh-HHHHHhhhhcc-ccceeEeeecccccccccccccccccccccccccccccCCCcceeHHHHhhcccccccc--c
Confidence 97763 22222222211 12223222110 0012334566554432111000 0
Q ss_pred hhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHcc-CCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcE
Q psy2842 333 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 411 (486)
Q Consensus 333 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~t 411 (486)
........+++++++|||||||.||+|+++|+++..++......+. +...++++++.+|++|.+|+...++.++..|++
T Consensus 211 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~ 290 (573)
T PRK05605 211 VSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGE 290 (573)
T ss_pred cCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCE
Confidence 0111245789999999999999999999999999877665444332 324578999999999999998888889999999
Q ss_pred EEEcCC-ChHHHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhh
Q psy2842 412 LWFADK-NALKVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFY 484 (486)
Q Consensus 412 v~~~~~-~~~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY 484 (486)
+++.+. ++....+.+.+. ..+..+..+..........+........+|+..+..-+ + .+.+.+...+.++|
T Consensus 291 ~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~-~-~~~~~~~~~i~~~Y 368 (573)
T PRK05605 291 LVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTV-E-LWEKLTGGLLVEGY 368 (573)
T ss_pred EEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHH-H-HHHHHhCCCeeccc
Confidence 988765 333333333221 11222333443333333333444455566665543221 1 13333433444555
Q ss_pred c
Q psy2842 485 D 485 (486)
Q Consensus 485 ~ 485 (486)
+
T Consensus 369 G 369 (573)
T PRK05605 369 G 369 (573)
T ss_pred c
Confidence 3
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=191.92 Aligned_cols=209 Identities=22% Similarity=0.229 Sum_probs=168.0
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.++|.++.+++++++..|.+.|++++++|++++.++.+|+..++|+++.|+..+|+++..+.+++.++++.+++++++
T Consensus 28 ~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i 107 (508)
T TIGR02262 28 ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVF 107 (508)
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEE
Confidence 47899999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ..+.+.+.....+..+.++..+... .....+.++........ ......++++++++|||||||.|||
T Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~i~~TSGTTG~PK~ 178 (508)
T TIGR02262 108 VSGE-LLPVIKAALGKSPHLEHRVVVGRPE--AGEVQLAELLATESEQF------KPAATQADDPAFWLYSSGSTGMPKG 178 (508)
T ss_pred Echh-hHHHHHHHHhcCCCccEEEEeCCCC--cccccHHHHhhcCCCcc------CCCCCCCCCcEEEEeCCCCCCCCcE
Confidence 9875 3444455555666666666654432 12234444433211110 0113346889999999999999999
Q ss_pred eEechHHHHHHHHH-HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++...... ....+++ ..+|+++..+|++|.+++...++.++..|+++++.+.
T Consensus 179 v~~s~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 237 (508)
T TIGR02262 179 VVHTHSNPYWTAELYARNTLGI-REDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE 237 (508)
T ss_pred EEEechhHHHHHHHHhHHhcCC-CCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC
Confidence 99999999877655 3455566 6789999999999999988888889999999988764
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=192.17 Aligned_cols=210 Identities=20% Similarity=0.354 Sum_probs=173.5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||+++++.+++++..|.+.|++++++|+++++++.++++.++|+++.|+.++|+++..+.+++..+++.+++++++
T Consensus 29 ~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~ 108 (521)
T PRK06187 29 GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVL 108 (521)
T ss_pred CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEE
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCC---CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
++.+ ..+.+..+....+.++.++..++... .+...++.++......... ......++.++++|||||||.
T Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~TSGtTG~ 181 (521)
T PRK06187 109 VDSE-FVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFD------FPDIDENDAAAMLYTSGTTGH 181 (521)
T ss_pred Ecch-HHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCC------CCCCCccceEEEEECCCCCCC
Confidence 9876 44555666666776666766654432 1344556665543321111 123456789999999999999
Q ss_pred CceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 356 SKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||+|.++|.++..........+++ ..++++++.+|++|.+++...+. ++..|+++++.+.
T Consensus 182 PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~-~l~~G~~~v~~~~ 241 (521)
T PRK06187 182 PKGVVLSHRNLFLHSLAVCAWLKL-SRDDVYLVIVPMFHVHAWGLPYL-ALMAGAKQVIPRR 241 (521)
T ss_pred CceEEeehHHHHHHHHHHHHhhCC-CCCCEEEEeCCchHHhhHHHHHH-HHHhCCEEEecCC
Confidence 999999999999888888788887 68899999999999998866555 9999999999876
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=196.69 Aligned_cols=210 Identities=16% Similarity=0.258 Sum_probs=164.5
Q ss_pred ccceehhhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||+++.+++.++|..|.+ .|++++++|+++++|+.++++.++|+++.|++.+|+++..+.+++.++++.++++++
T Consensus 36 ~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 115 (576)
T PRK05620 36 QEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVI 115 (576)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEE
Confidence 5689999999999999999986 799999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCC---------CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEc
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---------KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY 348 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 348 (486)
++++. ..+.+..+....+..+.++..+.... .....+|.++.+...... ......++++++++|
T Consensus 116 i~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~a~i~~ 188 (576)
T PRK05620 116 VADPR-LAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVY------DWPELDETTAAAICY 188 (576)
T ss_pred EEChh-hHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcCCCcC------CCCCCCccceeEEEE
Confidence 99865 44455555556666666655543211 012345666665322110 011245688999999
Q ss_pred CCCCCCCCceeEechHHHHHHHHHH--HHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 349 TSGTEGASKPVMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 349 TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||||||.||||+++|+++....... ...+.+ ..++++++.+|++|.+++. ..+.++..|+++++...
T Consensus 189 TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~-~~~~~l~~g~~~~~~~~ 257 (576)
T PRK05620 189 STGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAV-THGESFLCCVPIYHVLSWG-VPLAAFMSGTPLVFPGP 257 (576)
T ss_pred CCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCC-CCCCeEEEeCChHHhhhhH-HHHHHHhcCceEEecCC
Confidence 9999999999999999986554432 223555 6789999999999999874 46788999999988753
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=196.60 Aligned_cols=217 Identities=12% Similarity=0.159 Sum_probs=165.6
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||++++.++++++..|.+.|++++++|+++++|+.++++.++|+++.|+..+++++....+++.++++.+++++++
T Consensus 46 ~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li 125 (527)
T TIGR02275 46 NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYI 125 (527)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHH----HHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 279 VEDDKQL----EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 279 ~~~~~~~----~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
+++.... +....+....+.++.++........ ......+...... ........+++++++|||||||
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG 196 (527)
T TIGR02275 126 IDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE---AELFLWLESPAEP------VKFPPTKSDEVAFFQLSGGSTG 196 (527)
T ss_pred EcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc---chhhHHhhCcCcc------ccCCCCCCCccEEEEeCCCCCC
Confidence 9865321 1222233344555555544322111 1111111111100 0012345789999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC-ChHHHHHH
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK-NALKVYKA 425 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~-~~~~~~~~ 425 (486)
.||||+++|.++..+.......+.+ ..+|++++.+|++|.+++.. .++.++..|+++++.+. ++....+.
T Consensus 197 ~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 268 (527)
T TIGR02275 197 TPKLIPRTHNDYYYSVRRSVEICWL-TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPL 268 (527)
T ss_pred CCceeeeehHHHHHHHHHHHhhcCC-CcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHH
Confidence 9999999999999888777777777 67899999999999999765 57889999999988654 33333333
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-20 Score=195.26 Aligned_cols=214 Identities=15% Similarity=0.201 Sum_probs=156.6
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++++++.++|..|.+.|++++++|+++++|+.+++..++|+++.|++++|+++..+.+++.++++.+++++++
T Consensus 37 ~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii 116 (579)
T PLN03102 37 KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILF 116 (579)
T ss_pred CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCC------CCeEEEEecCCC----CCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEc
Q psy2842 279 VEDDKQLEKILKVKAQCP------KLKAIVQYEGKP----DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY 348 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~------~~~~iv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 348 (486)
++++ ....+..+....+ .++ ++..++.. ......++.++.......... ..........+++++|+|
T Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~il~ 193 (579)
T PLN03102 117 VDRS-FEPLAREVLHLLSSEDSNLNLP-VIFIHEIDFPKRPSSEELDYECLIQRGEPTPSL-VARMFRIQDEHDPISLNY 193 (579)
T ss_pred EChh-hHHHHHHHHhhccccccccCce-EEEecccccccCCcccccCHHHHHhccCCCCcc-cccccccCCCCCcEEEEe
Confidence 9765 3333333333222 122 33333211 111234566555433221111 011111235689999999
Q ss_pred CCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 349 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 349 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||||||.||||+++|+++............. ...++.+..+|++|..++.. .+.++..|+++++...
T Consensus 194 TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~-~~~~~~~g~~~v~~~~ 260 (579)
T PLN03102 194 TSGTTADPKGVVISHRGAYLSTLSAIIGWEM-GTCPVYLWTLPMFHCNGWTF-TWGTAARGGTSVCMRH 260 (579)
T ss_pred CCcCCCCCCEEEEecHHHHHHHHHHHhhcCC-CCCCeEEecCChhhhcchhH-HHHHHHhcCcEEeecc
Confidence 9999999999999999976554443334444 45678899999999988754 4567778888777654
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=192.89 Aligned_cols=212 Identities=19% Similarity=0.250 Sum_probs=164.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||.++.+.++++|..|.+.|++++++++++++|+.++++.++|+++.|+.++|+++....+++.+.+..+++++++
T Consensus 35 ~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~ 114 (517)
T PRK08008 35 VRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLV 114 (517)
T ss_pred cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhc-CCCCeEEEEecCCC-CCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQ-CPKLKAIVQYEGKP-DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 356 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~-~~~~~~iv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 356 (486)
++++ ..+.+..+... .+..+.+++.+... ...+..++.++........ . .......+++++++|||||||.|
T Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~a~i~~TSGtTG~P 188 (517)
T PRK08008 115 TSAQ-FYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATL----C-YAPPLSTDDTAEILFTSGTTSRP 188 (517)
T ss_pred Eecc-hhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCccc----c-ccCCCCCCCeEEEEECCCCCCCC
Confidence 9876 33444444332 23344555544322 1133445555433221110 0 11133568899999999999999
Q ss_pred ceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 357 KPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 357 KgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|||+++|.++............+ ..++++++.+|++|..+....++.++..|+++++.+.
T Consensus 189 K~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 248 (517)
T PRK08008 189 KGVVITHYNLRFAGYYSAWQCAL-RDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEK 248 (517)
T ss_pred cEEEEehHHHHHHHHHHhhhcCC-CCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccc
Confidence 99999999998654333323334 5789999999999999888889999999999999865
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=194.37 Aligned_cols=209 Identities=22% Similarity=0.239 Sum_probs=169.5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||.++..++++++..|.+.|++++++|+++++++.++++.++|++++|++++|+++..+.+++..+++.+++++++
T Consensus 40 ~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii 119 (542)
T PRK07786 40 GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVV 119 (542)
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++. ..+.+.++....+..+.++..++.. .....++++++........ ......+++++++|||||||.|||
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~i~~TSGTTG~PK~ 191 (542)
T PRK07786 120 TEAA-LAPVATAVRDIVPLLSTVVVAGGSS-DDSVLGYEDLLAEAGPAHA------PVDIPNDSPALIMYTSGTTGRPKG 191 (542)
T ss_pred Eccc-hHHHHHHhhhccCccceEEEecCCC-cccccCHHHHhhccCCCCC------CCCCCCCCeEEEEeCCCCCccchh
Confidence 9875 3344444555556666666655432 2234566666543322111 113446789999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
|+++|+++...+......+++...+++.++.+|++|.+|+ ..++.++..|+++++.+
T Consensus 192 v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~ 248 (542)
T PRK07786 192 AVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIYP 248 (542)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHH-HHHHHHHHccCEEEEcc
Confidence 9999999988877776666664567899999999999887 67888999999998864
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=194.41 Aligned_cols=211 Identities=18% Similarity=0.226 Sum_probs=164.0
Q ss_pred ccceehhhhHhhHHHHHHHHHHc-CCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~-g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||.++++++.++|..|.+. |.+++++|+++++|+.++++.++||++.|++++|+++..+.+++.++++.++++++
T Consensus 26 ~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l 105 (529)
T PRK07867 26 DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLV 105 (529)
T ss_pred CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEE
Confidence 36899999999999999999886 78899999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
+++++. ...+..+. +.+. ++.... ..+.+++........ .......+++++++|||||||.||
T Consensus 106 i~~~~~-~~~~~~~~---~~~~-~~~~~~-------~~~~~~l~~~~~~~~-----~~~~~~~~~~~~i~~TSGTTG~PK 168 (529)
T PRK07867 106 LTESAH-AELLDGLD---PGVR-VINVDS-------PAWADELAAHRDAEP-----PFRVADPDDLFMLIFTSGTSGDPK 168 (529)
T ss_pred EECHhH-HHHHHhhc---cCce-EEEecc-------ccHHHHhcccCCCCC-----CcccCCccceEEEEECCCCCCCCc
Confidence 998763 22222221 2222 222111 123333332111100 011245688999999999999999
Q ss_pred eeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHH
Q psy2842 358 PVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQ 427 (486)
Q Consensus 358 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~ 427 (486)
||+++|+++..+.......+++ ..+|+++..+|++|.++....++.++..|+++++.+. ++..+.+.+.
T Consensus 169 gv~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~ 238 (529)
T PRK07867 169 AVRCTHRKVASAGVMLAQRFGL-GPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVR 238 (529)
T ss_pred EEEecHHHHHHHHHHHHHhhCC-CcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHH
Confidence 9999999999888887778887 6789999999999999998888889999999998654 3444444443
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-20 Score=193.76 Aligned_cols=259 Identities=18% Similarity=0.177 Sum_probs=174.8
Q ss_pred ccceehhhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
.+++||+++++++.++|..|.+ .|++++++|+++++|+.+++..++|+++.|+.++|++|..+.+++.+++..++++++
T Consensus 47 ~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~i 126 (562)
T PRK05677 47 GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKAL 126 (562)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEE
Confidence 3689999999999999999986 599999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCC------------------------CCCcccHHHHHHhccCCCchhhHh
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD------------------------KPGVISWDELMELGRAAPDESLDR 333 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 333 (486)
+++++. .+.+..+.... .++.+++.+.... .+....+.+.+........
T Consensus 127 i~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 199 (562)
T PRK05677 127 VCLANM-AHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPV----- 199 (562)
T ss_pred EEecch-hhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCC-----
Confidence 987652 22222222221 2333333221110 0112223333322211100
Q ss_pred hhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHcc--CCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcE
Q psy2842 334 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK--LESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 411 (486)
Q Consensus 334 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~t 411 (486)
......++++++++|||||||.||||+++|+++..+.......+. .....+++++.+|++|.+++...++.++..|++
T Consensus 200 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~ 279 (562)
T PRK05677 200 TEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNH 279 (562)
T ss_pred CCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCe
Confidence 011235689999999999999999999999999877665554443 323457889999999999998888888899988
Q ss_pred EEEcCC--ChHHHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 412 LWFADK--NALKVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 412 v~~~~~--~~~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+++... ++..+.+.+.+. ..+..+..+...+......+.+....+.+|+..+.
T Consensus 280 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~ 340 (562)
T PRK05677 280 NILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL 340 (562)
T ss_pred EEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCH
Confidence 776543 333344333331 11222233333333333333445555666765543
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=196.96 Aligned_cols=269 Identities=15% Similarity=0.127 Sum_probs=175.7
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||+++..++.++|..|.+.|++++++|+++++++.++++.++|++++|++++|+++..+++++.++++.++++++++
T Consensus 40 ~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~ 119 (540)
T PRK05857 40 SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALV 119 (540)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
++... .....+......+. ++..+..... .. +..... ... .........+++++++|||||||.||||
T Consensus 120 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~---~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV 187 (540)
T PRK05857 120 APGSK-MASSAVPEALHSIP-VIAVDIAAVT-RE--SEHSLD---AAS----LAGNADQGSEDPLAMIFTSGTTGEPKAV 187 (540)
T ss_pred eccch-hccccccccccccc-eeEeeccccc-cc--cccccc---ccc----cccccCCCCCCeEEEEeCCCCCCCCCeE
Confidence 87521 11111111111121 1222211100 00 000000 000 0001234568899999999999999999
Q ss_pred EechHHHHHHHHHHHH----HccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHHHHHHHH------
Q psy2842 360 MLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQAA------ 429 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~~------ 429 (486)
+++|+++..+...... .+.. ..+++.++.+|++|..++. ..+.++..|+++++.+.++..+.+.+.+.
T Consensus 188 ~~sh~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~l~-~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~ 265 (540)
T PRK05857 188 LLANRTFFAVPDILQKEGLNWVTW-VVGETTYSPLPATHIGGLW-WILTCLMHGGLCVTGGENTTSLLEILTTNAVATTC 265 (540)
T ss_pred EEechhhhhhhHHhhhcccccccc-ccCceeeecCCccccchHH-HHHHHhhcceeEEecCCChhHHHHHHHhcCcceEE
Confidence 9999999865443221 1233 4578899999999999875 56788999999888666555555554431
Q ss_pred HhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 430 IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 430 i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
..+..+..+.....-....+.+..+.+.+|+..+...+ +++ ++++..+.+.|+
T Consensus 266 ~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~--~~~-~~~g~~i~~~YG 318 (540)
T PRK05857 266 LVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADV--RFI-EATGVRTAQVYG 318 (540)
T ss_pred eChHHHHHHHhccccCCCcCccceEEEEcCccCCchhH--HHH-HHhCCeeecccC
Confidence 12222333433332233344455555566664433222 222 344444555553
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=195.08 Aligned_cols=216 Identities=24% Similarity=0.313 Sum_probs=161.8
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||.++.+++.+++..|.+.|+.++++|+++++++.+++..++|++++|++.+|+++....+++.++++.++++++++
T Consensus 54 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~ 133 (546)
T PLN02330 54 KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVT 133 (546)
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
++... ..+... . . .++..+.. .......|.+++......... ........+++++++|||||||.||||
T Consensus 134 ~~~~~-~~~~~~----~-~-~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~il~TSGTTG~PKgv 202 (546)
T PLN02330 134 NDTNY-GKVKGL----G-L-PVIVLGEE-KIEGAVNWKELLEAADRAGDT---SDNEEILQTDLCALPFSSGTTGISKGV 202 (546)
T ss_pred ccchh-hhHhhc----C-C-cEEEecCC-CCCCcccHHHHHhhccccCcc---cccccCCcccEEEEEeCCCCcCCCcEE
Confidence 87632 222211 1 1 13333322 123445577766543221110 001223467899999999999999999
Q ss_pred EechHHHHHHHHHHHHHccC-CCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 360 MLSHDNITFNAACIIQYFKL-ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~~~~~~-~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
+++|+++..+.......... ....++.+..+|++|.+++...++.++..|+++++.+. ++..+.+.+
T Consensus 203 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i 271 (546)
T PLN02330 203 MLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNAL 271 (546)
T ss_pred EEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHH
Confidence 99999998765432211211 02356899999999999988888899999999988765 333444443
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-20 Score=191.65 Aligned_cols=209 Identities=23% Similarity=0.335 Sum_probs=167.2
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.++++|+++++.+.+++..|.+.|+.++++|+++++|+.++++.++|++..|+..+|+++....+++..+++.+++++++
T Consensus 23 ~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i 102 (515)
T TIGR03098 23 DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLV 102 (515)
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCC----CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
++++. .+.+.......+.+..++.+++.... .....|+++....... .......++.++++|||||||
T Consensus 103 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~TSGTTG 174 (515)
T TIGR03098 103 TSSER-LDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDAD-------PPHPVIDSDMAAILYTSGSTG 174 (515)
T ss_pred Eccch-hhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccccc-------ccCCCCcCCeEEEEECCCCCC
Confidence 97653 33333344444555556555533211 1234555554332211 011234578999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
.||||+++|.++...+......+++ ..+|++++.+|++|.+++. .++.++..|+++++.+.
T Consensus 175 ~PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~ 235 (515)
T TIGR03098 175 RPKGVVLSHRNLVAGAQSVATYLEN-RPDDRLLAVLPLSFDYGFN-QLTTAFYVGATVVLHDY 235 (515)
T ss_pred CCceEEEecHHHHHHHHHHHHHhCC-CcccEEEEECchhhHhHHH-HHHHHHHcCCEEEEcCC
Confidence 9999999999999888777777776 6789999999999998874 67899999999998865
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=191.83 Aligned_cols=257 Identities=21% Similarity=0.200 Sum_probs=182.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||.++++.+.++|..|.+.|++++++|+++++++.++++.++||++.|++.+|+++..+.+++..+++.+++++++
T Consensus 34 ~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii 113 (523)
T PRK08316 34 DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFL 113 (523)
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEec---CCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
++++. .+.+.......+.. .+.... ..........+.++........ .......+++++++|||||||.
T Consensus 114 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~i~~TSGtTG~ 185 (523)
T PRK08316 114 VDPAL-APTAEAALALLPVD-TLILSLVLGGREAPGGWLDFADWAEAGSVAE------PDVELADDDLAQILYTSGTESL 185 (523)
T ss_pred Eccch-HHHHHHHhhhcCcc-ceeeeecccccccccchhhHHHHHhcCCCcc------CccCCCCCCeEEEEeCCCCCCC
Confidence 98763 33333332222211 111111 1111123344444433222111 1123457889999999999999
Q ss_pred CceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH-----
Q psy2842 356 SKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA----- 429 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~----- 429 (486)
||+|.++|.++..........+++ ..++++++.+|++|..++...++.++..|+++++.+. ++....+.+.+.
T Consensus 186 PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~ 264 (523)
T PRK08316 186 PKGAMLTHRALIAEYVSCIVAGDM-SADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSF 264 (523)
T ss_pred CcEEEEecHHHHHHHHHHHHHhCC-CCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEE
Confidence 999999999999887777777777 6789999999999999987777788999999999854 433444433331
Q ss_pred -HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 -IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 -i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+...+......+........+|+..|.
T Consensus 265 ~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~ 300 (523)
T PRK08316 265 FAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPV 300 (523)
T ss_pred EeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCH
Confidence 01222334444443344444444444556665553
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-20 Score=192.19 Aligned_cols=209 Identities=20% Similarity=0.267 Sum_probs=161.0
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
..+||.+++.+++++|..|.+.|++++++|+++++|+.+++..++|+++.|++++|+++..+++++..+++.+++.++++
T Consensus 38 ~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~ 117 (539)
T PRK07008 38 HRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLF 117 (539)
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCC----CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
+++ ..+.+.++....+.++.++........ ....+++++........ ......++++++++|||||||.
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~i~~TSGTTG~ 190 (539)
T PRK07008 118 DLT-FLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDY------DWPRFDENQASSLCYTSGTTGN 190 (539)
T ss_pred cch-hHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCc------CcccCCcccceEEEECCCCCCC
Confidence 765 344445555556666655544332211 23455666554322110 0113456789999999999999
Q ss_pred CceeEechHHHHHHHHH--HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 356 SKPVMLSHDNITFNAAC--IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~--~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||||+++|+++..+... ....++. ..+|++++.+|++|.++.. ..+.++..|+++++..+
T Consensus 191 PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~~~~~~ 252 (539)
T PRK07008 191 PKGALYSHRSTVLHAYGAALPDAMGL-SARDAVLPVVPMFHVNAWG-LPYSAPLTGAKLVLPGP 252 (539)
T ss_pred CcEEEEecHHHHHHHHHhhcccccCC-CCCceEEecCchHHhhhHH-HHHHHHhcCceEEEecC
Confidence 99999999998754322 2234555 5789999999999987753 34677889999998754
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=194.29 Aligned_cols=208 Identities=16% Similarity=0.164 Sum_probs=154.7
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||+++.++++++|..|.+.|++++++|+++++|+.+++..++|+++.|++++|+++..+.+++.++++.++++++++
T Consensus 42 ~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 121 (534)
T PRK05852 42 IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI 121 (534)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCC-CCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKP-DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++............. ....+...... ...+.... ...... .+.. .........++.++++|||||||.|||
T Consensus 122 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~a~il~TSGTTG~PKg 193 (534)
T PRK05852 122 DADGPHDRAEPTTRW---WPLTVNVGGDSGPSGGTLSV-HLDAAT--EPTP--ATSTPEGLRPDDAMIMFTGGTTGLPKM 193 (534)
T ss_pred cCCCcchhccccccc---cceeeeeccccccccccccc-cccccc--CCCc--cccccCCCCCCceEEEeCCCCCCCCcE
Confidence 764221111000000 11111111111 00011000 000000 0000 000011224678999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
|+++|+++...+......+++ ..+|++++.+|++|.+++...++.++..|+++++..
T Consensus 194 v~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 250 (534)
T PRK05852 194 VPWTHANIASSVRAIITGYRL-SPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPA 250 (534)
T ss_pred EEecHHHHHHHHHHHHHHhCC-CCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCC
Confidence 999999999888888777877 678999999999999999888999999999998854
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=194.67 Aligned_cols=215 Identities=20% Similarity=0.191 Sum_probs=161.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++++.+.++|..|.+.|++++++|+++++|+.++++.++|++++|+.++|+++..+.+++.++++.+++++++
T Consensus 33 ~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii 112 (540)
T PRK06164 33 DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLV 112 (540)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH----HHHHHHHhh-cCCCCeEEEEecCCCC-CCCc--ccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCC
Q psy2842 279 VEDDKQ----LEKILKVKA-QCPKLKAIVQYEGKPD-KPGV--ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTS 350 (486)
Q Consensus 279 ~~~~~~----~~~~~~~~~-~~~~~~~iv~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 350 (486)
++++.. .+.+..... ..+.++.++..+.... .+.. ..+.+........... .........+++++++|||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TS 190 (540)
T PRK06164 113 VWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPA--AAGERAADPDAGALLFTTS 190 (540)
T ss_pred EccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccccccccCCcc--cccccCCCCCceEEEEECC
Confidence 976521 122221111 1233444444431111 1111 1111111110000000 0001123467899999999
Q ss_pred CCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 351 GTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 351 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||||.||||+++|+++..........+++ ..++++++.+|++|.+|+. .++.++..|+++++.+.
T Consensus 191 GtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~ 255 (540)
T PRK06164 191 GTTSGPKLVLHRQATLLRHARAIARAYGY-DPGAVLLAALPFCGVFGFS-TLLGALAGGAPLVCEPV 255 (540)
T ss_pred CCCCCCcEEEEehHHHHHHHHHHHHhcCC-CCCCEEEEcCCchhHHHHH-HHHHHHhcCceEEecCC
Confidence 99999999999999999988888888888 6889999999999999984 68899999999988765
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=189.26 Aligned_cols=214 Identities=20% Similarity=0.243 Sum_probs=164.8
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
..+||.++.+.++++|..|.+.|++++++|+++++++.++++.++|++++|+.++|+++..+.+++..+++.++++++++
T Consensus 27 ~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~ 106 (504)
T PRK07514 27 LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVC 106 (504)
T ss_pred CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
++.. .+.+..+..... ...++..+... ...+.+..... +.. ........+++++++|||||||.||+|
T Consensus 107 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~---~~~---~~~~~~~~~~~a~i~~TSGtTG~PK~v 174 (504)
T PRK07514 107 DPAN-FAWLSKIAAAAG-APHVETLDADG----TGSLLEAAAAA---PDD---FETVPRGADDLAAILYTSGTTGRSKGA 174 (504)
T ss_pred ccch-hHHHHHhhhccC-CceEEEecCCC----cccHHHhhhhc---Ccc---cCcccCCCCCeEEEEECCCCCCCCcEE
Confidence 8763 233333322221 22233332211 11122211111 000 001234578999999999999999999
Q ss_pred EechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 360 MLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
+++|+++...+......+++ ..+|++++.+|++|..|+...++.++..|+++++.+. ++....+.+
T Consensus 175 ~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i 241 (504)
T PRK07514 175 MLSHGNLLSNALTLVDYWRF-TPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALM 241 (504)
T ss_pred EEecHHHHHHHHHHHHHhCC-CCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHH
Confidence 99999999888777777777 6789999999999999998888999999999998765 333344433
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-20 Score=193.50 Aligned_cols=223 Identities=18% Similarity=0.178 Sum_probs=164.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||.++++++.+++..|.+.|++++++|+++++|+.+++..++|++..|++.+|++|....+++.++++.+++++++
T Consensus 56 ~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii 135 (567)
T PRK06178 56 GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLL 135 (567)
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCC--------C--------cccHHHHHHhccCCCchhhHhhhccCCCCc
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKP--------G--------VISWDELMELGRAAPDESLDRVLETIATNE 342 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (486)
+++. ..+.+..+.... ..+.+++.......+ . ...+.++.......+. .........++
T Consensus 136 ~~~~-~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 210 (567)
T PRK06178 136 ALDQ-LAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTA---PVPLPPPALDA 210 (567)
T ss_pred Eccc-hHHHHHHhhccC-CcceEEEeccccccccccccccccccccccccccccccHHHHhhcccc---ccccCCCCCCC
Confidence 9876 344444443333 233344332111100 0 0112222221111000 00112245789
Q ss_pred eEEEEcCCCCCCCCceeEechHHHHHHHHHHHHH-ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChH
Q psy2842 343 CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY-FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NAL 420 (486)
Q Consensus 343 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~ 420 (486)
+++++|||||||.||||+++|.++..+....... ... ..++++++.+|++|.+|....++.++..|+++++.+. ++.
T Consensus 211 ~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~ 289 (567)
T PRK06178 211 LAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG-GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAV 289 (567)
T ss_pred eEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC-CCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHH
Confidence 9999999999999999999999998765554333 344 6789999999999999988889999999999998765 334
Q ss_pred HHHHHHH
Q psy2842 421 KVYKATQ 427 (486)
Q Consensus 421 ~~~~~i~ 427 (486)
.+...+.
T Consensus 290 ~~~~~i~ 296 (567)
T PRK06178 290 AFMAAVE 296 (567)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-20 Score=195.25 Aligned_cols=196 Identities=18% Similarity=0.247 Sum_probs=148.8
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecC-CCCC--HHHHHHhhhhCCceE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY-TTNS--PEACLHCLVTSDANI 276 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~-~~~~--~~~l~~~~~~~~~~v 276 (486)
..+||++++++++++|..|.+. +++|++|+++++|+.++++.++|++++|++++|++ +... .+++.++++.+++++
T Consensus 54 ~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~ 132 (631)
T PRK07769 54 RDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSA 132 (631)
T ss_pred eEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCE
Confidence 4799999999999999999775 89999999999999999999999999999999994 4543 688999999999999
Q ss_pred EEEcChhHHHHHHHHhhcCCC--CeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 277 CVVEDDKQLEKILKVKAQCPK--LKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 277 vi~~~~~~~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
++++++. .+.+.......+. ...++..+.... . . .... ......++++++|+|||||||
T Consensus 133 vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~--~~~~-------~~~~~~~~d~a~i~~TSGTTG 193 (631)
T PRK07769 133 ILTTTDS-AEGVRKFFRARPAKERPRVIAVDAVPD---E------V--GATW-------VPPEANEDTIAYLQYTSGSTR 193 (631)
T ss_pred EEEChHH-HHHHHHHHhhccccccceEEEcccccc---c------c--cccc-------CCCCCCCCCeEEEEeCCCCCC
Confidence 9998753 3333333222221 112332221100 0 0 0000 001235689999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
.||||+++|+++..........+++ ..++++++.+|++|.+|+.. ++.++..|+++++..+
T Consensus 194 ~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~~~~~~~ 254 (631)
T PRK07769 194 IPAGVQITHLNLPTNVLQVIDALEG-QEGDRGVSWLPFFHDMGLIT-VLLPALLGHYITFMSP 254 (631)
T ss_pred CCcEEEEcHHHHHHHHHHHHHHcCC-CCcceEEEeCCCcCchhhHH-HHHHHhhCCeEEEECh
Confidence 9999999999999888777777777 67899999999999999865 4556678999888754
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=187.84 Aligned_cols=273 Identities=17% Similarity=0.241 Sum_probs=190.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||.++.+.+++++..|.+.|++++++|+++++++.++++.++|+++.|...+|++|..+.+++..++..+++.+++
T Consensus 35 ~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~ 114 (524)
T PRK06188 35 DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLI 114 (524)
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++..+.+.........+.+.+++..+.... ..++.......+... ......++++++++|||||||.||+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~pk~ 185 (524)
T PRK06188 115 VDPAPFVERALALLARVPSLKHVLTLGPVPD------GVDLLAAAAKFGPAP---LVAAALPPDIAGLAYTGGTTGKPKG 185 (524)
T ss_pred EecchhhHHHHHHhhhcCCceEEEEeCCccc------hhhHHHhhhccCccc---ccccCCCCCeEEEEeCCCCCCCCce
Confidence 9876555555544555555555554433211 111111111111100 0011234569999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH------Hh
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA------ID 431 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~------i~ 431 (486)
|+++|.++..........+++ ..++++++.+|++|..++. ++.++..|+++++.+. ++..+.+.+.+. ..
T Consensus 186 v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 262 (524)
T PRK06188 186 VMGTHRSIATMAQIQLAEWEW-PADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLV 262 (524)
T ss_pred eeeehHHHHHHHHHHHhhcCC-CcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEeh
Confidence 999999999988888888887 6789999999999998863 5788999999999876 333344333331 11
Q ss_pred hhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 432 RANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 432 ~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
+..+..+...+......+.+..+...+|+..+..- . ..+.+.+...+.+.|+
T Consensus 263 P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~-~-~~~~~~~~~~~~~~YG 314 (524)
T PRK06188 263 PTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVR-L-AEAIERFGPIFAQYYG 314 (524)
T ss_pred HHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHH-H-HHHHHHhCchhhheeC
Confidence 22233344443333334444445455565443321 1 2244456555666664
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-20 Score=191.51 Aligned_cols=223 Identities=10% Similarity=0.151 Sum_probs=170.0
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
+.+++. .+.+||.+++.++.+++..|.+.|++++++|+++++|+.+++..++|+++.|++.+++.+.....++..+
T Consensus 40 ~a~~~~----~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~ 115 (536)
T PRK10946 40 IAVICG----ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAY 115 (536)
T ss_pred eEEEeC----CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHH
Confidence 455553 4689999999999999999999999999999999999999999999999999987777777778889999
Q ss_pred hhhCCceEEEEcChhH----HHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 269 LVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~----~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
+..++++++++++... ......+....+..+.+++.+. .+...+.++......... .....+++++
T Consensus 116 ~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~~a 185 (536)
T PRK10946 116 ASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND----DGEHSLDDAINHPAEDFT------ATPSPADEVA 185 (536)
T ss_pred HhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC----CCCccHHHHhhCcccccc------cCCCCCCCeE
Confidence 9999999999876421 1223334445565655554432 123344444433221100 1234578999
Q ss_pred EEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC-ChHHH
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK-NALKV 422 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~-~~~~~ 422 (486)
+++|||||||.||||+++|+++..++......+++ ..++++++.+|++|.+++.. .++.++..|+++++... ++...
T Consensus 186 ~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 264 (536)
T PRK10946 186 FFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGF-TPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLC 264 (536)
T ss_pred EEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCC-CCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHH
Confidence 99999999999999999999999988888888887 67899999999999988754 67888999999988654 43344
Q ss_pred HHHH
Q psy2842 423 YKAT 426 (486)
Q Consensus 423 ~~~i 426 (486)
...+
T Consensus 265 ~~~l 268 (536)
T PRK10946 265 FPLI 268 (536)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=208.31 Aligned_cols=280 Identities=21% Similarity=0.240 Sum_probs=188.9
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||+++.++++++|..|.+ +++++++|+++++|+.+++..++|+++.|++.+|+++..+.+++.++++.++++++++
T Consensus 640 ~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~ 718 (1146)
T PRK08633 640 GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVIT 718 (1146)
T ss_pred CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEE
Confidence 589999999999999999965 5899999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHH--hhcCCCCeEEEEecCCCCC-CCcccHHHHHHhccCCCchhhHhh-hccCCCCceEEEEcCCCCCCC
Q psy2842 280 EDDKQLEKILKV--KAQCPKLKAIVQYEGKPDK-PGVISWDELMELGRAAPDESLDRV-LETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 280 ~~~~~~~~~~~~--~~~~~~~~~iv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~ 355 (486)
++. ..+.+... ....+....++..++.... .....+.+..... ..+....... .....++++++++|||||||.
T Consensus 719 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 796 (1146)
T PRK08633 719 SRK-FLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAAR-LLPARLLKRLYGPTFKPDDTATIIFSSGSEGE 796 (1146)
T ss_pred cHH-HHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhc-cCCHHHHHhhccCCCCCCCEEEEEECCCCCCC
Confidence 765 22332210 0012222234433321110 1111122211111 0111000000 124567899999999999999
Q ss_pred CceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC--ChHHHHHHHHHH----
Q psy2842 356 SKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK--NALKVYKATQAA---- 429 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~--~~~~~~~~i~~~---- 429 (486)
||||+++|+++..+.......++. .++|++++.+|++|.+|+...++.++..|+++++.+. ++....+.+.+.
T Consensus 797 PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~ 875 (1146)
T PRK08633 797 PKGVMLSHHNILSNIEQISDVFNL-RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATI 875 (1146)
T ss_pred CceEEechHHHHHHHHHHHHhcCC-CCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeE
Confidence 999999999999888888777777 6789999999999999998888999999999988653 333444444331
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
..+..+..+.+.+......+.+......+|+..|. .+++ .+.+++...+-+.|+
T Consensus 876 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~-~~~~-~~~~~~g~~~~~~YG 931 (1146)
T PRK08633 876 LLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKP-EVAD-AFEEKFGIRILEGYG 931 (1146)
T ss_pred EEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCH-HHHH-HHHHHhCCCeecccc
Confidence 11222333444444444444555555666765553 2222 244445444555554
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-20 Score=185.56 Aligned_cols=180 Identities=11% Similarity=0.061 Sum_probs=151.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..+ ..|++++++|++++.++.+++..++|++++|+.++|+++..+.+++..+++.+++++++
T Consensus 6 ~~~~ty~el~~~~~~~a~~l-~~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i 84 (414)
T PRK08308 6 DEEYSKSDFDLRLQRYEEME-QFQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLL 84 (414)
T ss_pred CceecHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEE
Confidence 35799999999999999988 46899999999999999999999999999999999999999999999999999999998
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++... ... . .....++++++++|||||||.|||
T Consensus 85 ~~~~~~-----------------~~~--~---------------------------~~~~~~~~~~~i~~TSGtTG~PKg 118 (414)
T PRK08308 85 YGESDF-----------------TKL--E---------------------------AVNYLAEEPSLLQYSSGTTGEPKL 118 (414)
T ss_pred ecCccc-----------------ccc--c---------------------------CCCCCCCCceEEEECCCCCCCCcE
Confidence 865310 000 0 001235788999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
|+++|+++..+.......+.. ..+++.+..+|++|.+|+...++.++..|+++++.+. ++....+.+
T Consensus 119 v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l 186 (414)
T PRK08308 119 IRRSWTEIDREIEAYNEALNC-EQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNIL 186 (414)
T ss_pred EEEehHhHHHHHHHHHHhhCC-CcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHH
Confidence 999999999888877777777 6788999999999999998899999999999988765 333333333
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-19 Score=185.04 Aligned_cols=273 Identities=17% Similarity=0.240 Sum_probs=184.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||+++++++.++|..|.+.|++++++|+++++++.+++..++||++.|+.++|+++..+.+++.++++.++++.++
T Consensus 30 ~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i 109 (528)
T PRK07470 30 DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMI 109 (528)
T ss_pred CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ..+....+....+....++..+... ...++.++......... .......+++++++|||||||.|||
T Consensus 110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~PK~ 180 (528)
T PRK07470 110 CHAD-FPEHAAAVRAASPDLTHVVAIGGAR---AGLDYEALVARHLGARV-----ANAAVDHDDPCWFFFTSGTTGRPKA 180 (528)
T ss_pred Ecch-hHHHHHHHHhhCCcCceEEEeCCCc---ccccHHHHHhcCCCCCC-----CcccCCCCCeEEEEeCCCCCCCCcE
Confidence 9875 3333444444444555555554322 23456655543211111 0113456889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHc--cCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC---ChHHHHHHHHH-----
Q psy2842 359 VMLSHDNITFNAACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK---NALKVYKATQA----- 428 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~---~~~~~~~~i~~----- 428 (486)
|+++|+++........... +. ...|+.+..+|++|.+++. .+ ..+..|+++++... ++..+.+.+.+
T Consensus 181 v~~s~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~ 257 (528)
T PRK07470 181 AVLTHGQMAFVITNHLADLMPGT-TEQDASLVVAPLSHGAGIH-QL-CQVARGAATVLLPSERFDPAEVWALVERHRVTN 257 (528)
T ss_pred EEEehhhHHHHHHHHHHHhccCC-CcccEEEEeccchhHHHHH-HH-HHHhcCceEEEecccCcCHHHHHHHHHhcCCeE
Confidence 9999999976554432222 33 5678999999999998874 33 35677777766542 33333333322
Q ss_pred -HHhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 429 -AIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 429 -~i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
...+..+..+...+......+........+|+..+..- +..+.+++...+.++|+
T Consensus 258 ~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~--~~~~~~~~g~~~~~~YG 313 (528)
T PRK07470 258 LFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRAD--QKRALAKLGKVLVQYFG 313 (528)
T ss_pred EechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHH--HHHHHHHhCcHHHHhCC
Confidence 11223333444444333333444444455565333211 12245555555667775
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=184.03 Aligned_cols=199 Identities=18% Similarity=0.223 Sum_probs=157.1
Q ss_pred ccceehhhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||+++++.++++|..|.+ .|+.++++|+++++++.++++.++|+++.|++.+|+++..+.+++..+++.++++++
T Consensus 25 ~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i 104 (496)
T PRK06839 25 EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVL 104 (496)
T ss_pred CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEE
Confidence 5789999999999999999975 699999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
++++. ....+........ ...++.+. ++.++...... .......+++++++|||||||.||
T Consensus 105 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~--------~~~~~~~~~~~~i~~TSGTTG~PK 165 (496)
T PRK06839 105 FVEKT-FQNMALSMQKVSY-VQRVISIT---------SLKEIEDRKID--------NFVEKNESASFIICYTSGTTGKPK 165 (496)
T ss_pred EEcHH-HHHHHHHhhhccC-cceEEEec---------chHhhhccCCC--------CCCCCCCCCcEEEEeCCCCCCCCc
Confidence 98765 2233333322221 12222221 12222211110 011234678999999999999999
Q ss_pred eeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 358 PVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 358 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+|+++|.++..+.......+++ ..+++++..+|++|.+|+...++.++..|+++++.+.
T Consensus 166 ~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 224 (496)
T PRK06839 166 GAVLTQENMFWNALNNTFAIDL-TMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRK 224 (496)
T ss_pred EEEEEhHHHHHHHHHHHHHcCC-CCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccC
Confidence 9999999998777666666676 6789999999999999988888889999999988755
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=210.24 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=163.4
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
...+.+.+ ..++||++++++++++|..|. .|++++++|+++++|+.++++.++|++++|++.+|+++..+.+++.+
T Consensus 648 ~~ai~~~~---~~~~Ty~el~~~~~~lA~~L~-~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~ 723 (1140)
T PRK06814 648 KLAVEDPV---NGPLTYRKLLTGAFVLGRKLK-KNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILS 723 (1140)
T ss_pred CeEeECCC---CCccCHHHHHHHHHHHHHHHH-hcCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 34555422 468999999999999999996 59999999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHH-HHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEE
Q psy2842 268 CLVTSDANICVVEDDKQLE-KILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTL 346 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~-~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 346 (486)
+++.+++++++++++.... .........+....++..++... ....++++........+. .......++|++++
T Consensus 724 ~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~a~i 798 (1140)
T PRK06814 724 ACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRA--QIGLADKIKGLLAGRFPL---VYFCNRDPDDPAVI 798 (1140)
T ss_pred HHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhc--cCChHHHHHHHhhccCCc---cccCCCCCCCcEEE
Confidence 9999999999998652211 11112222222233443332110 111111111110000000 00012457899999
Q ss_pred EcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 347 VYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 347 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+|||||||.||||+++|+++..+.......++. .++|++++.+|++|.+++...++.++..|+++++.+.
T Consensus 799 ~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~ 868 (1140)
T PRK06814 799 LFTSGSEGTPKGVVLSHRNLLANRAQVAARIDF-SPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPS 868 (1140)
T ss_pred EECCCccCCCcEEEecHHHHHHHHHHHHHhhCC-CCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 999999999999999999999888888887887 6789999999999999998889999999999988754
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-20 Score=194.67 Aligned_cols=194 Identities=18% Similarity=0.218 Sum_probs=145.0
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeec-CCCCC--HHHHHHhhhhCCceE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM-YTTNS--PEACLHCLVTSDANI 276 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi-~~~~~--~~~l~~~~~~~~~~v 276 (486)
.++||++++.+++++|..|.+. +++|++|+++++|+.++++.++|++++|++++|+ ++... ++++.++++.+++++
T Consensus 67 ~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~ 145 (612)
T PRK12476 67 VELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTV 145 (612)
T ss_pred eEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCE
Confidence 3799999999999999999775 8999999999999999999999999999999999 56665 789999999999999
Q ss_pred EEEcChhHHHHHHHHhhcCCC--CeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 277 CVVEDDKQLEKILKVKAQCPK--LKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 277 vi~~~~~~~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
++++++ ..+.+..+....+. ...++..+.... ... .... .....++++++|+|||||||
T Consensus 146 li~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~----~~~~--~~~~~~~d~a~i~yTSGTTG 206 (612)
T PRK12476 146 VLTTTA-AAEAVEGFLRNLPRLRRPRVIAIDAIPD------------SAG----ESFV--PVELDTDDVSHLQYTSGSTR 206 (612)
T ss_pred EEEcHH-HHHHHHHHHhhcccccCceEEEeccccc------------ccc----cccc--CCCCCCCceEEEEeCCCCCC
Confidence 999865 33333333333322 123333321100 000 0000 01235689999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHcc-CCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEE
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~ 414 (486)
.||||+++|+++..++......++ + .++++.++.+|++|.+|+...++.++..|.++++
T Consensus 207 ~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~ 266 (612)
T PRK12476 207 PPVGVEITHRAVGTNLVQMILSIDLL-DRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLM 266 (612)
T ss_pred CCceEEeeHHHHHHHHHHHHHHhccC-CCCceEEEeCCcccccchHHHHHHHhcCCeEEEE
Confidence 999999999999887776666666 5 5778999999999999986555555544444444
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-19 Score=186.55 Aligned_cols=277 Identities=22% Similarity=0.271 Sum_probs=182.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||.++.+++.+++..|.+.|+.++++|++++.++.++++.++|+++.|++++|++|....+++.++++.++++.++
T Consensus 44 ~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi 123 (541)
T TIGR03205 44 DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLI 123 (541)
T ss_pred CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH-HHHHHHHhhcCCCCeEEEEecCCC------------CCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEE
Q psy2842 279 VEDDKQ-LEKILKVKAQCPKLKAIVQYEGKP------------DKPGVISWDELMELGRAAPDESLDRVLETIATNECCT 345 (486)
Q Consensus 279 ~~~~~~-~~~~~~~~~~~~~~~~iv~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 345 (486)
+++... .+........ ..+..+++..... ..+...++++++....... ......+++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 196 (541)
T TIGR03205 124 TSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPA------EWPAVTPDDVAL 196 (541)
T ss_pred EeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCcccccHHHHHhcCCCCC------CCCCCCccCeEE
Confidence 876421 1111111111 1123333332211 0122344555543221110 011245688999
Q ss_pred EEcCCCCCCCCceeEechHHHHHHHHHHHHHcc----CC-CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-Ch
Q psy2842 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFK----LE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NA 419 (486)
Q Consensus 346 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~----~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~ 419 (486)
++|||||||.||||+++|+++....... ..+. .. ...+++++.+|++|.+++...++.++..|+++++.+. ++
T Consensus 197 i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~ 275 (541)
T TIGR03205 197 LQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDV 275 (541)
T ss_pred EEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCH
Confidence 9999999999999999999987654322 1111 10 2347899999999999988888999999999988764 44
Q ss_pred HHHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 420 LKVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 420 ~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
....+.+.+. ..+..+..+...+......+.+....+.+|+..+. .+.+ .+.+.+...+.+.|+
T Consensus 276 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~-~~~~-~~~~~~~~~~~~~YG 345 (541)
T TIGR03205 276 AAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPV-EVAN-FFERKTGLKLKSGWG 345 (541)
T ss_pred HHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCH-HHHH-HHHHHhCCCeecccc
Confidence 4454444431 11222233443333333333344455566665553 2222 234444434445553
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=188.08 Aligned_cols=209 Identities=17% Similarity=0.223 Sum_probs=160.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++..+++++|..|.+.|++++++|+++++|+.+++..++|++.+|++.+|+++..+.+++..+++.+++++++
T Consensus 37 ~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~ 116 (542)
T PRK06018 37 IVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVI 116 (542)
T ss_pred ceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCC-----CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPD-----KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 353 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT 353 (486)
++.+ ..+.+.++....+.++.+++..+... .+....+.++....... . .......+++++++||||||
T Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~i~~TSGTT 189 (542)
T PRK06018 117 TDLT-FVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGD----F--AWKTFDENTAAGMCYTSGTT 189 (542)
T ss_pred Eccc-cHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCcc----c--CcccCCccceeeEEecCCCC
Confidence 9876 44555555555666666555443221 12334555554432111 0 01234567899999999999
Q ss_pred CCCceeEechHHHHHH--HHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 354 GASKPVMLSHDNITFN--AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 354 G~PKgV~~sh~~l~~~--~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
|.||||+++|++.... .......+++ ..+|+++..+|++|.+++.. .+.++..|+++++..
T Consensus 190 G~PKgv~~s~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~h~~~~~~-~~~~~~~g~~~v~~~ 252 (542)
T PRK06018 190 GDPKGVLYSHRSNVLHALMANNGDALGT-SAADTMLPVVPLFHANSWGI-AFSAPSMGTKLVMPG 252 (542)
T ss_pred CCCcEEEEechhHHHHHHHHhhhhhcCC-CCCCEEEEecCHHHHhhhHH-HHhhhhcCceEEccC
Confidence 9999999999975322 2223344555 67899999999999988754 456789999998864
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=186.69 Aligned_cols=209 Identities=22% Similarity=0.248 Sum_probs=163.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||.++.+.++++|..|.+.|++++++|++++.|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 26 ~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~ 105 (533)
T PRK07798 26 DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALV 105 (533)
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCC---CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK---PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
+++. ..+.+..+....+..+.++..++.... .+.+++++++........ ......+.++++|||||||.
T Consensus 106 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~TSGTTG~ 177 (533)
T PRK07798 106 YERE-FAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERD-------FGERSPDDLYLLYTGGTTGM 177 (533)
T ss_pred Echh-hHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCC-------CCCCCCCceEEEECCCCCCC
Confidence 9865 444555555555666666666543322 235567776654322111 01123345789999999999
Q ss_pred CceeEechHHHHHHHHHHHHHc------cC--------CCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 356 SKPVMLSHDNITFNAACIIQYF------KL--------ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~------~~--------~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
||||+++|+++..........+ .. ...+++++..+|++|..++. .++.++..|+++++.+
T Consensus 178 PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-~~~~~l~~G~~~~~~~ 251 (533)
T PRK07798 178 PKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW-AAFAALFSGQTVVLLP 251 (533)
T ss_pred CcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHH-HHHHHHhcCceEEEec
Confidence 9999999999876544322211 00 02457899999999999985 7889999999999987
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=190.70 Aligned_cols=199 Identities=17% Similarity=0.272 Sum_probs=149.7
Q ss_pred ceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEc
Q psy2842 201 EICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 280 (486)
Q Consensus 201 el~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~ 280 (486)
++||+++.++++++|..|.+.|++++++|+++++|+.++++.++|++++|++++|++|..+.+++.++++.+++++++++
T Consensus 41 ~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~ 120 (552)
T PRK09274 41 ELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGI 120 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ChhHH-HHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 281 DDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 281 ~~~~~-~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
+.... ..+... ..+..+.++..+... .....++.++........ ........+++++|+|||||||.||||
T Consensus 121 ~~~~~~~~~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGTTG~PK~v 192 (552)
T PRK09274 121 PKAHLARRLFGW--GKPSVRRLVTVGGRL-LWGGTTLATLLRDGAAAP-----FPMADLAPDDMAAILFTSGSTGTPKGV 192 (552)
T ss_pred cHHHHHHHHhcc--Cccchhheecccccc-ccCCccHHHhcccCcccc-----CCCCCCCCCCeEEEEECCCCCCCCceE
Confidence 53221 111110 112222333332211 112223444432111110 001134568999999999999999999
Q ss_pred EechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 360 MLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
+++|+++...+......+++ ..+++.++.+|++|.+++ ..|+++++..
T Consensus 193 ~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~pl~~~~~~--------~~g~~~~~~~ 240 (552)
T PRK09274 193 VYTHGMFEAQIEALREDYGI-EPGEIDLPTFPLFALFGP--------ALGMTSVIPD 240 (552)
T ss_pred EecHHHHHHHHHHHHHHhCC-CCCceeeeccCHHHhhhh--------hhCCeEEecC
Confidence 99999999888887777777 678899999999987653 3588887764
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-19 Score=186.67 Aligned_cols=223 Identities=16% Similarity=0.179 Sum_probs=162.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.++++|+++...+.++|..|.+.|++++++|+++++|+.++++.++|+++.|++.+|+++..+.+++.++++.+++++++
T Consensus 43 ~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (567)
T PLN02479 43 SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVM 122 (567)
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCC-------CCeEEEEecCCCCC---------CCcccHHHHHHhccCCCchhhHhhhccCCCCc
Q psy2842 279 VEDDKQLEKILKVKAQCP-------KLKAIVQYEGKPDK---------PGVISWDELMELGRAAPDESLDRVLETIATNE 342 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~-------~~~~iv~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (486)
+++.. .+.......... ....+++++..... .+...+.+++........ . ......++
T Consensus 123 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~ 196 (567)
T PLN02479 123 VDQEF-FTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEFA----W-KPPADEWQ 196 (567)
T ss_pred Echhh-hhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHHhccccccc----c-CCCCCccc
Confidence 98753 222222221111 11223433322110 133445555543211100 0 01122346
Q ss_pred eEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHH
Q psy2842 343 CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKV 422 (486)
Q Consensus 343 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~ 422 (486)
.++++|||||||.||||+++|+++..........+++ ..+++.++.+|++|.+++...+...+..|.++++...++..+
T Consensus 197 ~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 275 (567)
T PLN02479 197 SIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGM-NEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAI 275 (567)
T ss_pred ceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCC-CCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHH
Confidence 7789999999999999999999987666555556666 678899999999999997666666777888877766665555
Q ss_pred HHHHHH
Q psy2842 423 YKATQA 428 (486)
Q Consensus 423 ~~~i~~ 428 (486)
.+.+.+
T Consensus 276 ~~~l~~ 281 (567)
T PLN02479 276 YSAIAN 281 (567)
T ss_pred HHHHHH
Confidence 555544
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-20 Score=212.90 Aligned_cols=214 Identities=17% Similarity=0.204 Sum_probs=155.0
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++...++++|..|.+.|+++|++|+++++++.++++.++|++++|+.++|++|..+.+++.++++.+++++++
T Consensus 268 ~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li 347 (1389)
T TIGR03443 268 TRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALI 347 (1389)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EcChh--HHHHHHHHhhcC----CCCeEEEEecCCCCCCCcccH--HHHHHhccCCCchhhHhhhccCCCCceEEEEcCC
Q psy2842 279 VEDDK--QLEKILKVKAQC----PKLKAIVQYEGKPDKPGVISW--DELMELGRAAPDESLDRVLETIATNECCTLVYTS 350 (486)
Q Consensus 279 ~~~~~--~~~~~~~~~~~~----~~~~~iv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 350 (486)
+.+.. ....+....... ..+..+............... .+.......... ........++++++|+|||
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~ii~TS 424 (1389)
T TIGR03443 348 VIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETDVLAPYQALKD---TPTGVVVGPDSNPTLSFTS 424 (1389)
T ss_pred EeccccccchhhhhhhhcccccccccceEEeccccccccccccccccccccccccccc---CCCCCcCCCCCceEEEECC
Confidence 86531 111111111110 011111111110000000000 000000000000 0001123578999999999
Q ss_pred CCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 351 GTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 351 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||||.||||+++|+++.+.+......+++ .++|+++...|++|..+. ..++.+|..|+++++.+.
T Consensus 425 GSTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~d~~~-~~i~~~L~~G~~l~~~~~ 489 (1389)
T TIGR03443 425 GSEGIPKGVLGRHFSLAYYFPWMAKRFGL-SENDKFTMLSGIAHDPIQ-RDMFTPLFLGAQLLVPTA 489 (1389)
T ss_pred CCCCCCCEEEeccHHHHHHHHHHHHhcCC-CCCCEEEEecCceecchH-HHHHHHHhCCCEEEEcCh
Confidence 99999999999999999988888888888 678999999999997654 688999999999999765
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=184.59 Aligned_cols=223 Identities=18% Similarity=0.229 Sum_probs=163.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||+++.+.+.++|..|.+.|+.++++|+++++++.++++.++|+++.|++++|+++..+.+++..+++.+++++++
T Consensus 41 ~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~ 120 (545)
T PRK08162 41 DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLI 120 (545)
T ss_pred CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCC-----CCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK-----PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 353 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT 353 (486)
++++ ..+.+.......+..+.+++....... .+..+++++....... ... ......+++++++||||||
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~i~~TSGTT 194 (545)
T PRK08162 121 VDTE-FAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPD----FAW-TLPADEWDAIALNYTSGTT 194 (545)
T ss_pred Eccc-hhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCcc----ccc-cCCCCCCCeEEEEeCCCCC
Confidence 9876 334444433333333222222111110 1233455554322110 000 0112345789999999999
Q ss_pred CCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHHHHHHH
Q psy2842 354 GASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQA 428 (486)
Q Consensus 354 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~ 428 (486)
|.||||+++|+++..+.......+.+ ..+++.++.+|++|.+++...++..+..|.++++...++..+.+.+.+
T Consensus 195 G~PKgv~~t~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 268 (545)
T PRK08162 195 GNPKGVVYHHRGAYLNALSNILAWGM-PKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIRE 268 (545)
T ss_pred CCCcEEEEecHHHHHHHHHHHHhcCC-CCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHHHHH
Confidence 99999999999987766655555666 567899999999999998766666676666666655555555544443
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=198.62 Aligned_cols=192 Identities=11% Similarity=0.108 Sum_probs=150.8
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
..+||++++++++++|..|.+.|+++|++|+++++++.++++.++|++++|++++|++|..+.+++.++++.++++++++
T Consensus 29 ~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~ 108 (705)
T PRK06060 29 DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVT 108 (705)
T ss_pred CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEE
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
+++. .+.+ .... + ....++........+. ......++++++++|||||||.||||
T Consensus 109 ~~~~-~~~~-------~~~~-~------------~~~~~~~~~~~~~~~~----~~~~~~~~~~a~il~TSGSTG~PKgV 163 (705)
T PRK06060 109 SDAL-RDRF-------QPSR-V------------AEAAELMSEAARVAPG----GYEPMGGDALAYATYTSGTTGPPKAA 163 (705)
T ss_pred chHH-hhhh-------cccc-c------------chhhhhhhhccccCCC----CCCCCCCCCeEEEEECCCCCCCCcEE
Confidence 7642 1111 0000 0 0011111111000000 01123467899999999999999999
Q ss_pred EechHHHHHHHHHHH-HHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 360 MLSHDNITFNAACII-QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~-~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+++|+++........ ..+++ ...+++++..|++|.+++...++.++..|+++++.+.
T Consensus 164 ~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 221 (705)
T PRK06060 164 IHRHADPLTFVDAMCRKALRL-TPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSA 221 (705)
T ss_pred EEccccHHHHHHHHHHHhhCC-CCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCC
Confidence 999999987765543 34566 6788999999999999887788899999999999763
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=186.53 Aligned_cols=259 Identities=16% Similarity=0.157 Sum_probs=173.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHc-CCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~-g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
...+||.++.++++++|..|.+. |++++++|+++++|+.++++.++|+++.|++.+|+++..+.+++.++++.++++++
T Consensus 47 ~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~ 126 (562)
T PRK12492 47 GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARAL 126 (562)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEE
Confidence 35799999999999999999875 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecC------------------------CCCCCCcccHHHHHHhccCCCchhhHh
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEG------------------------KPDKPGVISWDELMELGRAAPDESLDR 333 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (486)
++++. .......+... .....++.... ....+...+|+++...+.....
T Consensus 127 i~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 199 (562)
T PRK12492 127 VYLNM-FGKLVQEVLPD-TGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSL----- 199 (562)
T ss_pred Eeccc-cchHHHHhhhc-cCceEEEeechhhccccccchhcccccccccccccccCCcccccHHHHHhccCCCCC-----
Confidence 98764 22222222111 11111111000 0001122345544433211100
Q ss_pred hhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHcc---------CCCCCeEEEEeCchhhHHHHHHHHHH
Q psy2842 334 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK---------LESAALSVISFLPLSHIAAQTVDIYS 404 (486)
Q Consensus 334 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---------~~~~~~~~l~~~pl~h~~g~~~~~~~ 404 (486)
.......+++++|+|||||||.||||+++|+++..+.......+. +...++++++.+|++|.+++...++.
T Consensus 200 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~ 279 (562)
T PRK12492 200 KPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMC 279 (562)
T ss_pred CCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHH
Confidence 011345678999999999999999999999999877665554432 11234678999999999999888888
Q ss_pred HHHhCcEEEEcCC--ChHHHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 405 VMTVAATLWFADK--NALKVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 405 ~l~~G~tv~~~~~--~~~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
.+..|+++++... +.....+.+.+. ..+..+..+...+......+....+...+|+..+.
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~ 347 (562)
T PRK12492 280 MMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVK 347 (562)
T ss_pred HhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCH
Confidence 8889988766532 333344333321 11222333444443344444455556666765543
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=186.35 Aligned_cols=191 Identities=21% Similarity=0.253 Sum_probs=153.6
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||.++++++++++..|.+.|++++++|+++++++.+++..++|++++|+.++|+++..+.+++..++..+++++++
T Consensus 25 ~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi 104 (483)
T PRK03640 25 EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLI 104 (483)
T ss_pred CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++.. ...... . ...+.++........ ........+++++++|||||||.||+
T Consensus 105 ~~~~~~-~~~~~~----~----------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGtTG~PK~ 158 (483)
T PRK03640 105 TDDDFE-AKLIPG----I----------------SVKFAELMNGPKEEA-----EIQEEFDLDEVATIMYTSGTTGKPKG 158 (483)
T ss_pred Ecchhh-HHHhhh----c----------------cccHHHHhhcccccC-----CCCCCCCCCCeEEEEeCCCcCCCCcE
Confidence 976522 111100 0 011233222211000 01113356889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|.++...+......+++ ..+|++++.+|++|.+++. .++.++..|+++++.+.
T Consensus 159 v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~ 215 (483)
T PRK03640 159 VIQTYGNHWWSAVGSALNLGL-TEDDCWLAAVPIFHISGLS-ILMRSVIYGMRVVLVEK 215 (483)
T ss_pred EEEecHHHHHHHHHHHHhcCC-CcCcEEEEecCHHHHHHHH-HHHHHHhcCCEEEecCC
Confidence 999999998877776677777 6889999999999999874 46788999999998876
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-19 Score=184.55 Aligned_cols=278 Identities=20% Similarity=0.177 Sum_probs=180.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||.++++.+++++..|.+.|++++++|+++++|+.+++..++|+++.|++.+|++|....+++.++++.+++++++
T Consensus 46 ~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi 125 (557)
T PRK07059 46 GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIV 125 (557)
T ss_pred CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCC-----------------------CCCCCcccHHHHHHhccCCCchhhHhhh
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGK-----------------------PDKPGVISWDELMELGRAAPDESLDRVL 335 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (486)
+++. ....+..+.... ..+.+++.... ...++...+.+.+..+..... ..
T Consensus 126 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 198 (557)
T PRK07059 126 VLEN-FATTVQQVLAKT-AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTF-----KP 198 (557)
T ss_pred Echh-hHHHHHHhhccc-CCceeEEecccccccccccccccccccccccccccCCCCcccHHHHhhccCCCCC-----CC
Confidence 8765 333333332222 22222222100 001223344444433221110 01
Q ss_pred ccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccC----C--CCCeEEEEeCchhhHHHHHHHHHHHHHhC
Q psy2842 336 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL----E--SAALSVISFLPLSHIAAQTVDIYSVMTVA 409 (486)
Q Consensus 336 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~----~--~~~~~~l~~~pl~h~~g~~~~~~~~l~~G 409 (486)
....++++++|+|||||||.||||+++|.++..++......... . .....+++.+|++|.++.....+.++..|
T Consensus 199 ~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g 278 (557)
T PRK07059 199 VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTG 278 (557)
T ss_pred CCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhc
Confidence 23457899999999999999999999999998765543332211 0 12457788999999999877888888888
Q ss_pred cEEEEcCC--ChHHHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHH
Q psy2842 410 ATLWFADK--NALKVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIID 481 (486)
Q Consensus 410 ~tv~~~~~--~~~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~ 481 (486)
++.++... +....++.+.+. ..+..+..+...+......+.+..+...+|+..+.. +.+ .+.+.+...+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~-~~~-~~~~~~~~~~~ 356 (557)
T PRK07059 279 GRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRP-VAE-RWLEMTGCPIT 356 (557)
T ss_pred ceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCCHH-HHH-HHHHHhCCCee
Confidence 88766543 333333333221 111122334444333333444445555666554421 211 23344544455
Q ss_pred hhhc
Q psy2842 482 KFYD 485 (486)
Q Consensus 482 ~lY~ 485 (486)
+.|+
T Consensus 357 ~~YG 360 (557)
T PRK07059 357 EGYG 360 (557)
T ss_pred eccc
Confidence 5553
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=183.48 Aligned_cols=209 Identities=19% Similarity=0.223 Sum_probs=158.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||.++.+++.+++..|.+.|+.++++++++++++.++++.++|+++.|+.++|+++..+.+++.++++.+++++++
T Consensus 25 ~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i 104 (497)
T PRK06145 25 DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLL 104 (497)
T ss_pred CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++... .. ... ...+..+.... ..+..+....... .......++++++++|||||||.||+
T Consensus 105 ~~~~~~~-~~-----~~~--~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PK~ 166 (497)
T PRK06145 105 VDEEFDA-IV-----ALE--TPKIVIDAAAQ----ADSRRLAQGGLEI------PPQAAVAPTDLVRLMYTSGTTDRPKG 166 (497)
T ss_pred Eccchhh-hh-----hcc--cceEEecCccc----chhHHHhccCCCC------CCCCCCCccceEEEEeCCCCCCCCcE
Confidence 9865321 10 000 11222221100 0111111100000 00113457889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
|+++|+++..........+++ ..+++++..+|++|.+++....+.++..|+++++.+. ++....+.+
T Consensus 167 v~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i 234 (497)
T PRK06145 167 VMHSYGNLHWKSIDHVIALGL-TASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAI 234 (497)
T ss_pred EEEecHHHHHHHHHHHHhhCC-CCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHH
Confidence 999999998776666666677 6788999999999999988777888999999988765 333333333
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=188.05 Aligned_cols=199 Identities=16% Similarity=0.200 Sum_probs=150.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCC---CCCHHHHHHhhhhCCce
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT---TNSPEACLHCLVTSDAN 275 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~---~~~~~~l~~~~~~~~~~ 275 (486)
.+++||.+++.++.++|..|.+.| .+|++|+++++|+.++++.++||+++|++++|+++ ...++++.++++.++++
T Consensus 33 ~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~ 111 (578)
T PRK05850 33 AETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPS 111 (578)
T ss_pred eeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCC
Confidence 368999999999999999999888 68999999999999999999999999999999997 45789999999999999
Q ss_pred EEEEcChhHHHHHHHHhhcCC--CCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCC
Q psy2842 276 ICVVEDDKQLEKILKVKAQCP--KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 353 (486)
Q Consensus 276 vvi~~~~~~~~~~~~~~~~~~--~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT 353 (486)
+++++++. .+.+.......+ ....++..+... ....... .......++.++|+||||||
T Consensus 112 ~il~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-----~~~~~~~~d~a~i~~TSGTT 172 (578)
T PRK05850 112 VVLTTSAV-VDDVTEYVAPQPGQSAPPVIEVDLLD-------------LDSPRGS-----DARPRDLPSTAYLQYTSGST 172 (578)
T ss_pred EEEEcHHH-HHHHHHHHhhcccccccceEeecccc-------------cccCCcc-----ccCCCCCCCeEEEEeCCCCC
Confidence 99998752 233322211111 111122111100 0000000 00123468899999999999
Q ss_pred CCCceeEechHHHHHHHHHHHHHc-cC----CCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 354 GASKPVMLSHDNITFNAACIIQYF-KL----ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 354 G~PKgV~~sh~~l~~~~~~~~~~~-~~----~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|.||||+++|+++..++......+ .. ...++++++.+|++|..|++..++.++..|+++++.++
T Consensus 173 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~ 241 (578)
T PRK05850 173 RTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSP 241 (578)
T ss_pred CCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCH
Confidence 999999999999987766554332 21 14578999999999999998889999999999999864
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=208.48 Aligned_cols=192 Identities=18% Similarity=0.188 Sum_probs=154.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++.+.+.++|..|.+.|++++++|+++++++.++++.++|++++|+.++|++|..+.+++.++++.+++++++
T Consensus 481 ~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i 560 (1296)
T PRK10252 481 RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLI 560 (1296)
T ss_pred CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++.. ..+ ...+.+. +...... ....... ......++++++|+|||||||.|||
T Consensus 561 ~~~~~~-~~~----~~~~~~~-~~~~~~~------------~~~~~~~-------~~~~~~~~~~a~i~~TSGSTG~PKg 615 (1296)
T PRK10252 561 TTADQL-PRF----ADVPDLT-SLCYNAP------------LAPQGAA-------PLQLSQPHHTAYIIFTSGSTGRPKG 615 (1296)
T ss_pred ECcchh-hhc----ccCCCce-eeecccc------------cccccCC-------CCCCCCCCCeEEEEECCCCCCCCCE
Confidence 987521 111 1111111 1111100 0000000 0012246889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++.+.+......+++ .++|+++...|++|..+. ..++.+|..|+++++.++
T Consensus 616 V~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~ 672 (1296)
T PRK10252 616 VMVGQTAIVNRLLWMQNHYPL-TADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMAEP 672 (1296)
T ss_pred EEeccHHHHHHHHHHHHhcCC-CCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEECCh
Confidence 999999999999888888888 688999999999987764 678999999999999765
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-19 Score=182.07 Aligned_cols=191 Identities=17% Similarity=0.169 Sum_probs=153.5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||.++.+++.+++..|.+.|+.++++|+++++++.++++.++|+++.|++++|+++....+++.++++.+++++++
T Consensus 20 ~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii 99 (488)
T PRK09088 20 GRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLL 99 (488)
T ss_pred CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++..... .. ..+.++++......... ........+++++++|||||||.||+
T Consensus 100 ~~~~~~~~-------~~----------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGTTG~PK~ 152 (488)
T PRK09088 100 GDDAVAAG-------RT----------------DVEDLAAFIASADALEP----ADTPSIPPERVSLILFTSGTSGQPKG 152 (488)
T ss_pred Ecchhhcc-------cc----------------cccchhhhhhhcccccc----ccCCCCCCCCceEEEeCCCCCCCCcE
Confidence 87652110 00 01112222211111000 00112346789999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++...+......... ..++++++.+|++|++|+...++.++..|+++++.+.
T Consensus 153 v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~ 210 (488)
T PRK09088 153 VMLSERNLQQTAHNFGVLGRV-DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG 210 (488)
T ss_pred EEEehHHHHHHHHHHHHhhCC-CCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 999999998777766665555 6789999999999999998888999999999988754
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-19 Score=185.06 Aligned_cols=258 Identities=23% Similarity=0.286 Sum_probs=173.6
Q ss_pred ccceehhhhHhhHHHHHHHHH-HcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~-~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
.+++||+++.+++.++|..|. +.|++++++|+++++++.++++.++|+++.|++.+|++|..+.+++.+++..++++++
T Consensus 48 ~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~v 127 (560)
T PRK08751 48 GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVL 127 (560)
T ss_pred CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEE
Confidence 368999999999999999996 5799999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCC------------------------CCCCCcccHHHHHHhccCCCchhhHh
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGK------------------------PDKPGVISWDELMELGRAAPDESLDR 333 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (486)
++++.. ...+..+....+ ...++..+-. ...++...+.+..........
T Consensus 128 i~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 200 (560)
T PRK08751 128 VVIDNF-GTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSM----- 200 (560)
T ss_pred EEcchh-HHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhhhccccccCCCccccHHHHHhccCCCCC-----
Confidence 998763 333333333333 2223322100 000122333333332211100
Q ss_pred hhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHcc----CCCCCeEEEEeCchhhHHHHHHHHHHHHHhC
Q psy2842 334 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK----LESAALSVISFLPLSHIAAQTVDIYSVMTVA 409 (486)
Q Consensus 334 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~----~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G 409 (486)
.......+++++++|||||||.||||+++|.++..+.......+. +...++++++.+|++|.+++....+.++..|
T Consensus 201 ~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 280 (560)
T PRK08751 201 PTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIG 280 (560)
T ss_pred CCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhcc
Confidence 011235688999999999999999999999999887766555443 2223467889999999999877777777788
Q ss_pred cEEEEcCC--ChHHHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCC
Q psy2842 410 ATLWFADK--NALKVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGP 463 (486)
Q Consensus 410 ~tv~~~~~--~~~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltp 463 (486)
+++++... +...+.+.+.+. ..+..+..+...+...+..+.+......+|+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~ 342 (560)
T PRK08751 281 GCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQ 342 (560)
T ss_pred ceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCC
Confidence 77766443 333333333321 1122233344444444444545555566666443
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-19 Score=187.31 Aligned_cols=204 Identities=17% Similarity=0.193 Sum_probs=155.4
Q ss_pred ECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCC-------HHH
Q psy2842 192 VDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS-------PEA 264 (486)
Q Consensus 192 ~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~-------~~~ 264 (486)
.|.++.....+||.+++.++.++|..|.+.|++++++|+++++|+.++++.++|+++.|++.+|+++... .++
T Consensus 40 ~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~ 119 (579)
T PRK09192 40 YDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQ 119 (579)
T ss_pred EecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHH
Confidence 4433322367999999999999999999999999999999999999999999999999999999976433 689
Q ss_pred HHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
+.++++.++++++++++.. ...+.......+ . +.. .++.++....... ........++++
T Consensus 120 l~~~i~~~~~~~il~~~~~-~~~~~~~~~~~~-~--~~~----------~~~~~~~~~~~~~------~~~~~~~~~~~a 179 (579)
T PRK09192 120 LRGMLASAQPAAIITPDEL-LPWVNEATHGNP-L--LHV----------LSHAWFKALPEAD------VALPRPTPDDIA 179 (579)
T ss_pred HHHHHHhcCCCEEEeChHH-HHHHHHhhcccc-c--cce----------eehhhhcccCCCc------cccCCCCCCCeE
Confidence 9999999999999998763 222222221111 1 111 1122221111100 001123568899
Q ss_pred EEEcCCCCCCCCceeEechHHHHHHHHHHHH-HccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
+++|||||||.||||+++|+++..+...... .+++ ..+|++++.+|++|.+|+...++.++..|+++++..
T Consensus 180 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (579)
T PRK09192 180 YLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKV-RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLP 251 (579)
T ss_pred EEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccC-CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeC
Confidence 9999999999999999999999988777666 6676 678999999999999999888888899999987754
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=182.76 Aligned_cols=211 Identities=18% Similarity=0.178 Sum_probs=157.9
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+.+.+. .+++||.++.++++++|..|.+.| .++++|+++++|+.+++..++|+++.|++++|+++..+++++.+
T Consensus 17 ~~a~~~~----~~~~Ty~~l~~~~~~~a~~L~~~~-~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~ 91 (487)
T PRK07638 17 KIAIKEN----DRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKE 91 (487)
T ss_pred CeEEecC----CcEeeHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHH
Confidence 3455553 468999999999999999998887 47899999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLV 347 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 347 (486)
++..++++++++++... ..+. . ... .++..+ .+.+......... .......+++++|+
T Consensus 92 ~~~~~~~~~vi~~~~~~-~~~~---~--~~~-~~~~~~---------~~~~~~~~~~~~~------~~~~~~~~~~a~i~ 149 (487)
T PRK07638 92 RLAISNADMIVTERYKL-NDLP---D--EEG-RVIEID---------EWKRMIEKYLPTY------APIENVQNAPFYMG 149 (487)
T ss_pred HHHhCCCCEEEEecccc-cchh---h--ccc-eEEEeh---------hhhhhhhhccccc------cccccCCCCcEEEE
Confidence 99999999999987521 1111 0 001 122111 1111111110000 00112346789999
Q ss_pred cCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 348 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
|||||||.||||+++|+++..++......+++ ..+|+++...|++|..++ ..++.++..|+++++.+. ++....+.+
T Consensus 150 ~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~~~~~~~~~i 227 (487)
T PRK07638 150 FTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHM-KREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKFIPNQVLDKL 227 (487)
T ss_pred eCCCCCCCCcEEEEecHHHHHHHHHHHHhcCc-CCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCCCHHHHHHHH
Confidence 99999999999999999999888877777777 678999999999998765 567889999999998765 344444444
Q ss_pred H
Q psy2842 427 Q 427 (486)
Q Consensus 427 ~ 427 (486)
.
T Consensus 228 ~ 228 (487)
T PRK07638 228 E 228 (487)
T ss_pred H
Confidence 3
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-21 Score=193.75 Aligned_cols=155 Identities=20% Similarity=0.285 Sum_probs=138.2
Q ss_pred hhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC--
Q psy2842 121 KQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 121 ~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
.++++|++||.+.|.|+||++++++++.+ +|++|.+.||+||++++.....+ +.++++.|+|+||+++.++|++|+
T Consensus 284 ~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~g~~~ 362 (528)
T COG0365 284 GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVDDEGNPV 362 (528)
T ss_pred cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCCceeEEECCCCCcC
Confidence 46788899999999999999999999999 79999999999999966666655 556777799999999999999866
Q ss_pred --Cccceehh--------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHH
Q psy2842 198 --GNGEICLK--------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPE 263 (486)
Q Consensus 198 --~~gel~~~--------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~ 263 (486)
+.|+|.++ +||++++++.+.+... ++.+||.+..|.|+++.++| +++..|.. |.+.+.|+
T Consensus 363 ~~~~G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~----~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~R--ig~~EvE~ 436 (528)
T COG0365 363 PPGVGELVVRLPWPGMALTYWNDPERYKEAYFGR----WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKR--IGPLEIES 436 (528)
T ss_pred CCCceEEEEeCCCchhhhhhhCCHHHHHHHHhhc----eeecCceeEEccCCCEEEEeeccceEeccCee--ccHHHHHH
Confidence 22888875 8999999998888543 89999999999999999999 88999998 89999999
Q ss_pred HHHHhhhhCCceEEEEcCh
Q psy2842 264 ACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 264 ~l~~~~~~~~~~vvi~~~~ 282 (486)
.|..|+.++++.+|..+|+
T Consensus 437 ~l~~hP~VaEaAvVg~pd~ 455 (528)
T COG0365 437 VLLAHPAVAEAAVVGVPDP 455 (528)
T ss_pred HHHhCcceeeeEEEeccCC
Confidence 9999999999999999887
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-19 Score=183.10 Aligned_cols=181 Identities=18% Similarity=0.227 Sum_probs=147.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++.++++++|..|. ++++|+++++++.++++.++|++++|+.++|+++..+.+++.++++.+++++++
T Consensus 23 ~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il 97 (471)
T PRK07787 23 GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWL 97 (471)
T ss_pred CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEE
Confidence 578999999999999999985 369999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++.. ....+.+. . .... .++. . ......+++++++|||||||.|||
T Consensus 98 ~~~~~~-------~~~~~~~~---~-~~~~-----~~~~---------~-------~~~~~~~~~a~i~~TSGTTG~PK~ 145 (471)
T PRK07787 98 GPAPDD-------PAGLPHVP---V-RLHA-----RSWH---------R-------YPEPDPDAPALIVYTSGTTGPPKG 145 (471)
T ss_pred ecCCcc-------ccccccee---e-eccc-----cccc---------c-------CCCCCCCceEEEEECCCCCCCCCE
Confidence 876311 11111110 0 0000 0000 0 012346899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++...+......+++ ..++++++.+|++|++|++..++.++..|+++++.+.
T Consensus 146 v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 203 (471)
T PRK07787 146 VVLSRRAIAADLDALAEAWQW-TADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGR 203 (471)
T ss_pred EEEeHHHHHHHHHHHHHhcCC-CccceeEeccCCeeechhHHHHHHHHhcCCEEEecCC
Confidence 999999999888877777777 6788999999999999999999999999999998765
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=218.66 Aligned_cols=199 Identities=17% Similarity=0.241 Sum_probs=153.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCH-----HHHHHhhhhCC
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP-----EACLHCLVTSD 273 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~-----~~l~~~~~~~~ 273 (486)
..++||+++..+++++|..|... .++|++|+++++++.+|++.++||+++|++.||++|.... +++.++++.++
T Consensus 38 ~~~lTy~el~~~~~~lA~~L~~~-~~~gd~V~i~~~~s~~~~~~~la~l~aG~~~vp~~p~~~~~~~~~~rl~~il~~~~ 116 (4334)
T PRK05691 38 GVVLSYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAE 116 (4334)
T ss_pred ceEeeHHHHHHHHHHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHHHHhCceEeccCCcccccccHHHHHHHHHHhCC
Confidence 45899999999999999999765 4999999999999999999999999999999999997654 56999999999
Q ss_pred ceEEEEcChhHHHHHHHHhhcC-CCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCC
Q psy2842 274 ANICVVEDDKQLEKILKVKAQC-PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGT 352 (486)
Q Consensus 274 ~~vvi~~~~~~~~~~~~~~~~~-~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGT 352 (486)
++++++... ..+.+..+.... .....++..+.-... ... ........++|+|+|+|||||
T Consensus 117 ~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~------~~~~~~~~~~d~a~i~yTSGT 177 (4334)
T PRK05691 117 PRLLLTVAD-LRDSLLQMEELAAANAPELLCVDTLDPA------------LAE------AWQEPALQPDDIAFLQYTSGS 177 (4334)
T ss_pred CCEEEECHH-HHHHHHhhhhcccccCceEEEccccccc------------ccc------cccCCCCCcCCeEEEEeCCCC
Confidence 999999865 233333222111 112223322211000 000 000113457899999999999
Q ss_pred CCCCceeEechHHHHHHHHHHHHHccCC-CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 353 EGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 353 TG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||.||||+++|+|+.++.......+++. .++|++++++|++|.+|++..++.+++.|+++++.++
T Consensus 178 TG~PKGV~lsH~~l~~~~~~~~~~~~~~~~~~d~~l~~lp~~h~~g~~~~~~~~l~~G~~~v~~~~ 243 (4334)
T PRK05691 178 TALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSP 243 (4334)
T ss_pred CCCCcEEEEEhHHHHHHHHHHHHHhCCCCCCCceEEEeccchhhhHHHHHHHHHHHCCCEEEEeCc
Confidence 9999999999999998877776665542 5689999999999999998899999999999998876
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=181.59 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=149.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++++++.++|..|.+.|++++++|+++++++.+++..++|++..|++++|++|..+.+++.++++.+++++++
T Consensus 47 ~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii 126 (563)
T PRK06710 47 GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVIL 126 (563)
T ss_pred CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEE
Confidence 35799999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCC--CCCCc-----------------------ccHHHHHHhccCCCchhhHh
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKP--DKPGV-----------------------ISWDELMELGRAAPDESLDR 333 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~ 333 (486)
+++.. ...+........ ...+++..... ..+.. ..|+.+..... . ..
T Consensus 127 ~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~ 198 (563)
T PRK06710 127 CLDLV-FPRVTNVQSATK-IEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVN----T--GV 198 (563)
T ss_pred Eeccc-hhhhhccchhhc-cceeEEeccccccccccccccchhhcccccccccccccchhhhhhhhhhccc----c--cc
Confidence 98752 222211111111 12222211000 00000 00111100000 0 00
Q ss_pred hhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHH-HccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEE
Q psy2842 334 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 412 (486)
Q Consensus 334 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv 412 (486)
.......++.++++|||||||.||||+++|+++..+...... .+.....++++++.+|++|.+|....++.++..|+++
T Consensus 199 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 278 (563)
T PRK06710 199 EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKM 278 (563)
T ss_pred ccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeE
Confidence 001123578999999999999999999999999755433322 2344345678899999999999877778899999999
Q ss_pred EEcCC
Q psy2842 413 WFADK 417 (486)
Q Consensus 413 ~~~~~ 417 (486)
++.+.
T Consensus 279 ~~~~~ 283 (563)
T PRK06710 279 VLIPK 283 (563)
T ss_pred EEcCC
Confidence 88765
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=177.85 Aligned_cols=184 Identities=18% Similarity=0.203 Sum_probs=151.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..+++|.++++..++++..|.+.|+.++++++++++++.+++..++|+++.|+.++|+++..+++++..++..+++.+++
T Consensus 26 ~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i 105 (458)
T PRK09029 26 DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFAL 105 (458)
T ss_pred CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++... +. .+..... .. ... .......++++++++|||||||.|||
T Consensus 106 ~~~~~~~--~~-------~~~~~~~-~~-----------------~~~------~~~~~~~~~~~a~i~~TSGTTG~PKg 152 (458)
T PRK09029 106 VLEGENT--FS-------ALTSLHL-QL-----------------VEG------AHAVAWQPQRLATMTLTSGSTGLPKA 152 (458)
T ss_pred EcCcccc--hh-------hcccccc-cc-----------------ccc------cCcccCCCCCeEEEEECCCCCCCCCE
Confidence 8765211 00 0000000 00 000 00012356889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++..........++. ..+++++..+|++|.+|+. .++.++..|+++++.+.
T Consensus 153 v~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~v~~~~~ 209 (458)
T PRK09029 153 AVHTAQAHLASAEGVLSLMPF-TAQDSWLLSLPLFHVSGQG-IVWRWLYAGATLVVRDK 209 (458)
T ss_pred EEEeHHHHHHHHHHHhhcCCC-CccceEEEecCcHhhhhhH-HHHHHHhCCceEEeCCh
Confidence 999999999988887777777 6788999999999999974 56678999999998775
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=220.92 Aligned_cols=193 Identities=16% Similarity=0.193 Sum_probs=155.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++..+++++|..|.+.|++++++|+++++++.++++.++|++++|+.++|++|..+.+++.++++.+++++++
T Consensus 3118 ~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vl 3197 (3956)
T PRK12467 3118 DQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLL 3197 (3956)
T ss_pred CcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++... .+.+ ...... .++..+... ...... ........++++++|+|||||||+|||
T Consensus 3198 t~~~~-~~~~----~~~~~~-~~~~~~~~~------------~~~~~~-----~~~~~~~~~~~~a~ii~TSGSTG~PKg 3254 (3956)
T PRK12467 3198 TQAHL-LEQL----PAPAGD-TALTLDRLD------------LNGYSE-----NNPSTRVMGENLAYVIYTSGSTGKPKG 3254 (3956)
T ss_pred echhh-hhhc----ccccCC-ceeeecchh------------hcccCC-----CCCcccCCCCceEEEEEccCCCCCcce
Confidence 97652 1111 000111 112221110 000000 000113457899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
|+++|+++.+.+......+++ ..+|+++.++|++|..+ +..++.+|..|+++++.+
T Consensus 3255 V~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~l~i~~ 3310 (3956)
T PRK12467 3255 VGVRHGALANHLCWIAEAYEL-DANDRVLLFMSFSFDGA-QERFLWTLICGGCLVVRD 3310 (3956)
T ss_pred eeehhHHHHHHHHHHHHhcCC-CcCCEEEEecCccHhHH-HHHHHHHHhCCCEEEECC
Confidence 999999999999888888888 78999999999999766 578899999999999987
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-19 Score=221.51 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=157.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++...++++|..|.+.|++++++|+++..++.+.++.++|++++|+.+||++|..+.+++.++++.+++.+++
T Consensus 3743 ~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l 3822 (4334)
T PRK05691 3743 DQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLV 3822 (4334)
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEE
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCC--eEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKL--KAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 356 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~--~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 356 (486)
+++... +....+....... ..+++.+... .... +. ........+++.|||+|||||||.|
T Consensus 3823 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~--~~---~~~~~~~~~~~~ayvi~TSGSTG~P 3884 (4334)
T PRK05691 3823 CSAACR-EQARALLDELGCANRPRLLVWEEVQ------------AGEV--AS---HNPGIYSGPDNLAYVIYTSGSTGLP 3884 (4334)
T ss_pred ecCccc-chhhhhhcccccccccceeeecccc------------cccc--cc---cCCCCCCCCCceEEEEECCCCCCCC
Confidence 987521 1111122221111 1111111100 0000 00 0011134578999999999999999
Q ss_pred ceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC
Q psy2842 357 KPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 418 (486)
Q Consensus 357 KgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~ 418 (486)
|||+++|+++.+.+......+++ .++++++...|+.+..+ ++.++.++..|+++++.+..
T Consensus 3885 KGV~~~h~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~fd~s-~~~~~~~l~~G~~l~i~~~~ 3944 (4334)
T PRK05691 3885 KGVMVEQRGMLNNQLSKVPYLAL-SEADVIAQTASQSFDIS-VWQFLAAPLFGARVEIVPNA 3944 (4334)
T ss_pred CEEEeehHHHHHHHHHHHHhcCC-CccceEEEecCCchhHH-HHHHHHHHhCCCEEEEcCcc
Confidence 99999999999999888888888 78899999998887655 47899999999999998763
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=227.05 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=157.0
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++.++++++|..|.+.|++++++|+++++++.++++.++|++++|+.++|++|..+.+++.++++.+++++++
T Consensus 534 ~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l 613 (5163)
T PRK12316 534 EETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLL 613 (5163)
T ss_pred CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++.... .. ........ ++..+... ......... .......++++++|+|||||||.|||
T Consensus 614 ~~~~~~-~~----~~~~~~~~-~~~~~~~~---------~~~~~~~~~------~~~~~~~~~~~a~ii~TSGSTG~PKg 672 (5163)
T PRK12316 614 SQSHLG-RK----LPLAAGVQ-VLDLDRPA---------AWLEGYSEE------NPGTELNPENLAYVIYTSGSTGKPKG 672 (5163)
T ss_pred EChhhh-hh----CCcccCce-EEEecCcc---------hhhccCCCC------CCCCCCCCCCeEEEEECCCcCCCCCE
Confidence 986521 11 11111111 22222110 000000000 00112457899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++.+.+......+++ ..+++++..+|++|..+. ..++.+|..|+++++.++
T Consensus 673 V~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~i~~~ 729 (5163)
T PRK12316 673 AGNRHRALSNRLCWMQQAYGL-GVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVVAAP 729 (5163)
T ss_pred eeEcCHHHHHHHHHHHHhcCC-CCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEEECCc
Confidence 999999999999888888888 678999999999998886 578999999999999854
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-19 Score=180.69 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=140.5
Q ss_pred ehhhhHhhHHHHHHHHHHcCC-cccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcC
Q psy2842 203 CLKEYEANVRTVAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 203 ~~~~y~~~~~~~a~~l~~~g~-~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
.|+++.+++.++|+.|.+.|+ .++++|+++.+|++++++.++|++++|++++|++|..+++++.++++.++++++++++
T Consensus 21 ~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (452)
T PRK07445 21 NSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGLD 100 (452)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEecC
Confidence 467999999999999999887 5799999999999999999999999999999999999999999999999999999876
Q ss_pred hhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEe
Q psy2842 282 DKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVML 361 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~ 361 (486)
+... . . ... . . .. .....+++.++++|||||||.||||++
T Consensus 101 ~~~~--------~------~--~~~-~---~-------------~~-------~~~~~~~~~~~i~~TSGTTG~PKgV~~ 140 (452)
T PRK07445 101 QLKL--------S------H--PPP-L---P-------------SQ-------GILPNLETGWIMIPTGGSSGQIRFAIH 140 (452)
T ss_pred cccc--------c------c--CCC-C---C-------------cc-------ccCCCCCCcEEEEeCCCCCCCCcEEEe
Confidence 4110 0 0 000 0 0 00 001245789999999999999999999
Q ss_pred chHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 362 SHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 362 sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
||+++..........+++ . .++.++.+|++|.+|+ ..++.++..|+++++.+.
T Consensus 141 t~~~l~~~~~~~~~~~~~-~-~~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~ 193 (452)
T PRK07445 141 TWETLTASVQGFQRYFQL-Q-QVNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPY 193 (452)
T ss_pred chHHHHHHHHHHHHHhcC-C-CCceEeccCchhhhhH-HHHHHHHHcCCeEEEcCh
Confidence 999998887777666665 3 3467899999999988 467789999999998764
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.4e-19 Score=182.24 Aligned_cols=193 Identities=19% Similarity=0.279 Sum_probs=153.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++.+++.++|..|.+.|++++++|++++.++.++++.++|+++.|++++|+++....+++.+++...+++.++
T Consensus 23 ~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii 102 (502)
T TIGR01734 23 GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVI 102 (502)
T ss_pred CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++... ...... ++... ....+....... ........++.++++|||||||.||+
T Consensus 103 ~~~~~~~--------~~~~~~-~~~~~---------~~~~~~~~~~~~------~~~~~~~~~~~~~il~TSGTTG~PK~ 158 (502)
T TIGR01734 103 HTAELSI--------DAVGTQ-IITLS---------ALEQAETSGGPV------SFDHAVKGDDNYYIIYTSGSTGNPKG 158 (502)
T ss_pred ecccccc--------cccCCc-eEEch---------HhhhhhhhcCCc------cccccCCCCCeEEEEECCCCCCCCCE
Confidence 9765211 111111 11110 001111111100 00112356789999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++..........++. ..++++++.+|++|..++ ..++.++..|+++++.+.
T Consensus 159 v~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~ 215 (502)
T TIGR01734 159 VQISHDNLVSFTNWMLADFPL-SEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDK 215 (502)
T ss_pred EEEecHHHHHHHHHHHHhCCC-CCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCH
Confidence 999999999888887777777 678999999999998876 577889999999998875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=218.36 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=156.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++..+++++|..|.+.|++++++|+++++++.++++.++|++++|+.++|++|..+.+++.++++.+++++++
T Consensus 1597 ~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l 1676 (3956)
T PRK12467 1597 EQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLL 1676 (3956)
T ss_pred CcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++... ..+ ....... ++..+... +........ .......++++++|+|||||||.|||
T Consensus 1677 ~~~~~~-~~~----~~~~~~~-~~~~~~~~---------~~~~~~~~~------~~~~~~~~~~~ayiiyTSGSTG~PKG 1735 (3956)
T PRK12467 1677 TQSHLQ-ARL----PLPDGLR-SLVLDQED---------DWLEGYSDS------NPAVNLAPQNLAYVIYTSGSTGRPKG 1735 (3956)
T ss_pred eChhhh-hhC----ccccCCc-EEEecccc---------chhccCCCC------CCCCCCCCcCcEEEEECCCcCCCCCE
Confidence 976521 111 1111111 22222111 000000000 00113457899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++.+.+......+++ ..+++++...|++|..+. +.++.+|..|+++++.++
T Consensus 1736 V~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~ 1792 (3956)
T PRK12467 1736 AGNRHGALVNRLCATQEAYQL-SAADVVLQFTSFAFDVSV-WELFWPLINGARLVIAPP 1792 (3956)
T ss_pred EEEcCHHHHHHHHHHHHhcCC-CcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEcCh
Confidence 999999999998888888888 678999999999998775 678999999999999875
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=181.48 Aligned_cols=202 Identities=18% Similarity=0.201 Sum_probs=146.6
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCC--------
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-------- 259 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~-------- 259 (486)
.+.+++.++.....+||+++.++++++|..|.+. ++|++|++++.|+.++++.++|++++|++++ +++.
T Consensus 18 ~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-~~~~~~~~~~~~ 94 (525)
T PRK05851 18 DLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-ILPGPVRGADDG 94 (525)
T ss_pred ceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-CCCCCCCccchh
Confidence 3456665433346789999999999999999876 7899999999999999999999999999864 4442
Q ss_pred CCHHHHHHhhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCC
Q psy2842 260 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 339 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (486)
...+++.+++..++++++++++.. ...+..... .+ ...+ +... ....... ......
T Consensus 95 ~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~---~~----~~~~---------~~~~---~~~~~~~----~~~~~~ 150 (525)
T PRK05851 95 RWADATLTRFAGIGVRTVLSHGSH-LERLRAVDS---SV----TVHD---------LATA---AHTNRSA----SLTPPD 150 (525)
T ss_pred hHHHHHHHHHHhcCCCEEEeCHHH-HHHHHHhhc---cc----cccc---------cccc---ccccccc----cCCCCC
Confidence 223555667888999999987652 222221111 00 0000 0000 0000000 001235
Q ss_pred CCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 340 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 340 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
++++++|+|||||||.||||+++|+++...+......+++...+|++++++|++|.+|+. .++.++..|+++++.+.
T Consensus 151 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~ 227 (525)
T PRK05851 151 SGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA-FLLTAALAGAPLWLAPT 227 (525)
T ss_pred CCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH-HHHHHHHcCCeEEEcCH
Confidence 689999999999999999999999999988888777777732789999999999999985 67889999999999763
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=179.58 Aligned_cols=271 Identities=18% Similarity=0.227 Sum_probs=182.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||.++.+.+.+++..|.+.|++++++|++++.|+.+++..++|+++.|+.++|+++....+++.+++..+++++++
T Consensus 9 ~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii 88 (502)
T PRK08276 9 GEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLI 88 (502)
T ss_pred CcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCC-CCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 279 VEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
+++.. ...+..+....+ .++.+++..+. ......|.+........ .....++.++++|||||||.||
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~a~i~~TSGtTG~PK 156 (502)
T PRK08276 89 VSAAL-ADTAAELAAELPAGVPLLLVVAGP--VPGFRSYEEALAAQPDT---------PIADETAGADMLYSSGTTGRPK 156 (502)
T ss_pred Eccch-hhHHHHHhhhccccccEEEEeCCC--CCccccHHHHHhcCCCC---------CCCCCCcceEEEECCCCCCCCc
Confidence 98763 333333333344 34444443221 12334455443321110 1123567899999999999999
Q ss_pred eeEechHHHHHHHH------HHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH-
Q psy2842 358 PVMLSHDNITFNAA------CIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA- 429 (486)
Q Consensus 358 gV~~sh~~l~~~~~------~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~- 429 (486)
||+++|.++..... ........ ..++++++.+|++|.+++... +.++..|+++++.+. ++....+.+.+.
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 234 (502)
T PRK08276 157 GIKRPLPGLDPDEAPGMMLALLGFGMYG-GPDSVYLSPAPLYHTAPLRFG-MSALALGGTVVVMEKFDAEEALALIERYR 234 (502)
T ss_pred eEEEccCCcchhhhhHHhhhhhhhcccC-CCCCEEEEcCcHHHHHHHHHH-HHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence 99999887653321 11111222 357899999999999987655 468999999988765 333344443331
Q ss_pred -----HhhhhHHHHhhhcc--cccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 430 -----IDRANLKSISNAQK--IQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 430 -----i~~~~~~~l~~~~~--i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
..+..+..+...+. ...+++.+......+|+..+. .+.+ .+.+.+...+.+.|+
T Consensus 235 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~-~~~~-~~~~~~~~~~~~~yG 295 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPV-EVKR-AMIDWWGPIIHEYYA 295 (502)
T ss_pred CeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCH-HHHH-HHHHHhCcHhhhhcc
Confidence 11222233333221 123444555555667765543 3333 355556666666774
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-20 Score=197.16 Aligned_cols=155 Identities=30% Similarity=0.482 Sum_probs=137.1
Q ss_pred ceeEEEeccCCCCHHHHHHHHh-CC-CceeccccccccccccccCCCCC--CCcCccccccCCceEEEECCCCC-----C
Q psy2842 128 RCRVSLSGAAPISTELKRYFLS-LD-IPICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEE-----G 198 (486)
Q Consensus 128 ~lr~~~~gga~l~~~~~~~~~~-~g-~~i~~~yG~TE~~~~~~~~~~~~--~~~~s~G~p~p~~~~~i~d~~~~-----~ 198 (486)
++|.+++||+++++++++++++ ++ ..++++|||||+++.++.+...+ .+.+++|+|+|+++++|+|++++ .
T Consensus 292 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~ 371 (534)
T COG0318 292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGE 371 (534)
T ss_pred ceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCCCC
Confidence 4999999999999999999997 76 57999999999998888877766 47889999999999999997763 3
Q ss_pred ccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.|||+++ |||++++.++..|..+| |.+|||++..+.++++.+.| +++.||.+ |+|.+.|+.+..+
T Consensus 372 vGei~irgp~v~~GY~~~pe~t~~~f~~~g---W~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~n--i~p~eiE~~l~~~ 446 (534)
T COG0318 372 VGEIWVRGPNVMKGYWNRPEATAEAFDEDG---WLRTGDLGYVDEDGYLYIVGRLKDLIISGGEN--IYPEEIEAVLAEH 446 (534)
T ss_pred ceEEEEECchhhhhhcCChHHHHHhhccCC---eeeecceEEEcCCccEEEEeccceEEEeCCeE--ECHHHHHHHHHhC
Confidence 5777764 99999999999886546 99999999999999998888 78899999 7999999999999
Q ss_pred hhhCCceEEEEcChhHHHH
Q psy2842 269 LVTSDANICVVEDDKQLEK 287 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~ 287 (486)
..+.++.++.++++.+++.
T Consensus 447 ~~V~~aavvgvpd~~~Ge~ 465 (534)
T COG0318 447 PAVAEAAVVGVPDERWGER 465 (534)
T ss_pred CCcceEEEEeCCCCccCce
Confidence 9999999999999865543
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=175.85 Aligned_cols=211 Identities=23% Similarity=0.287 Sum_probs=151.5
Q ss_pred ccceehhhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
.+.+||.++.+.+++++..|.+ .|++++++|++++.++.++++.++|+++.|++.+|++|..+.+++.++++.++++.+
T Consensus 46 ~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i 125 (560)
T PRK08974 46 GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAI 125 (560)
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEE
Confidence 4689999999999999999974 799999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCC--CC----------------------CCcccHHHHHHhccCCCchhhHh
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--DK----------------------PGVISWDELMELGRAAPDESLDR 333 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~--~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 333 (486)
+++++. .+.+..+.... ..+.++...... .. +...++.+....+.... .
T Consensus 126 i~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 198 (560)
T PRK08974 126 VIVSNF-AHTLEKVVFKT-PVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQ-----Y 198 (560)
T ss_pred EEeccc-cHHHHHHhhhc-CcceEEEecccccccccccccccchhhhcccccccccCCCcccHHHHhhccCCCC-----C
Confidence 987652 22222222211 122222211000 00 01111111111111000 0
Q ss_pred hhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHcc--CCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcE
Q psy2842 334 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK--LESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 411 (486)
Q Consensus 334 ~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~t 411 (486)
.......+++++++|||||||.||||+++|.++..+.......+. ....++.++..+|++|.+++....+.++..|++
T Consensus 199 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~ 278 (560)
T PRK08974 199 VKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQ 278 (560)
T ss_pred CCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCe
Confidence 001235689999999999999999999999999876654433332 124567889999999999988888888889998
Q ss_pred EEEcC
Q psy2842 412 LWFAD 416 (486)
Q Consensus 412 v~~~~ 416 (486)
+++..
T Consensus 279 ~~~~~ 283 (560)
T PRK08974 279 NLLIT 283 (560)
T ss_pred EEEec
Confidence 77753
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=179.87 Aligned_cols=257 Identities=13% Similarity=0.134 Sum_probs=168.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||.++.+.+.+++..|.+.|++++++|+++++++.+++..++|++.+|++.+|+++....+++.++++.+++++++
T Consensus 58 ~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii 137 (516)
T PRK13383 58 DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVV 137 (516)
T ss_pred CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ..+.+..... .++..+... . . ..... . .+...++.++++|||||||.|||
T Consensus 138 ~~~~-~~~~~~~~~~------~~~~~~~~~-----~---~-~~~~~-~---------~p~~~~~~~~il~TSGTTG~PK~ 191 (516)
T PRK13383 138 ADNE-FAERIAGADD------AVAVIDPAT-----A---G-AEESG-G---------RPAVAAPGRIVLLTSGTTGKPKG 191 (516)
T ss_pred Echh-HHHHHHhhhc------ceEEeccch-----h---h-hhcCC-C---------CCCCCCCCcEEEECCCCCCCCCe
Confidence 9875 2232222111 122221100 0 0 00000 0 01123456799999999999999
Q ss_pred eEechHHHHHH--HHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHHH-----
Q psy2842 359 VMLSHDNITFN--AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAAI----- 430 (486)
Q Consensus 359 V~~sh~~l~~~--~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~i----- 430 (486)
|+++|...... .......+++ ..+++++..+|++|.+|+. .++.++..|+++++... +.....+.+.+.-
T Consensus 192 v~~s~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~ 269 (516)
T PRK13383 192 VPRAPQLRSAVGVWVTILDRTRL-RTGSRISVAMPMFHGLGLG-MLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFT 269 (516)
T ss_pred eeecchhhhhhhhHHhHHhhhcc-CCCCeEEEecCCcchhhHH-HHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEE
Confidence 99999743211 1122234455 5788999999999999985 46778999999987654 3334444333210
Q ss_pred -hhhhHHHHhhhcc-cc-cccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 431 -DRANLKSISNAQK-IQ-KFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 431 -~~~~~~~l~~~~~-i~-~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
.+..+..+..... .. ...+......+.+|+..+. .+ ++.+.+.|...+-++|+
T Consensus 270 ~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~-~~-~~~~~~~~g~~v~~~YG 325 (516)
T PRK13383 270 AVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDP-TL-GQRFMDTYGDILYNGYG 325 (516)
T ss_pred ecHHHHHHHHhccccccccCCCCceEEEEECCCCCCH-HH-HHHHHHHcCchhhhccc
Confidence 1111222322211 00 1122233344455554332 12 23356667666777775
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=218.76 Aligned_cols=195 Identities=17% Similarity=0.206 Sum_probs=154.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||+++...++++|..|.+.|++++++|+++++++.++++.++|++++|++++|++|..+.+++.++++.+++.+++
T Consensus 2026 ~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl 2105 (5163)
T PRK12316 2026 DQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLL 2105 (5163)
T ss_pred CCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++... ..+ ....... .+..+.. ..+...... .......++++++|+|||||||.|||
T Consensus 2106 ~~~~~~-~~~----~~~~~~~-~~~~~~~---------~~~~~~~~~-------~~~~~~~~~~~a~ii~TSGSTG~PKg 2163 (5163)
T PRK12316 2106 TQRHLL-ERL----PLPAGVA-RLPLDRD---------AEWADYPDT-------APAVQLAGENLAYVIYTSGSTGLPKG 2163 (5163)
T ss_pred eChhhh-hhc----ccccccc-eEeccch---------hhhhccCcc-------CCCCCCCCCCeEEEEeCccCCCCCCE
Confidence 987521 110 0011111 1111110 000000000 00113467899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++.+.+......+++ .++++++.++|++|..+ +..++.+|..|+++++.+.
T Consensus 2164 V~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~~~~~~~ 2220 (5163)
T PRK12316 2164 VAVSHGALVAHCQAAGERYEL-SPADCELQFMSFSFDGA-HEQWFHPLLNGARVLIRDD 2220 (5163)
T ss_pred eEEccHHHHHHHHHHHHhcCC-CCcceEEEecCchHHHH-HHHHHHHHhCCCEEEeCCc
Confidence 999999999999888888888 78899999999988644 5789999999999987653
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=174.47 Aligned_cols=217 Identities=18% Similarity=0.237 Sum_probs=158.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||.++...+++++..|.+.|++++++|++++.++.+++..++|+++.|..++|+++....+++.++++.++++.++
T Consensus 22 ~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li 101 (511)
T PRK13391 22 GEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALI 101 (511)
T ss_pred CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++... +.+..+....+.....+...+.........+.+........ .....++.++++|||||||.|||
T Consensus 102 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~a~il~TSGtTG~PKg 171 (511)
T PRK13391 102 TSAAKL-DVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPAT---------PIADESLGTDMLYSSGTTGRPKG 171 (511)
T ss_pred EchhhH-HHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCCCC---------CCCCcccccEEEECCCCCCCCCE
Confidence 987643 33344444555554455444322222333333332211100 01123457899999999999999
Q ss_pred eEe--chHHHHHH---HHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHH
Q psy2842 359 VML--SHDNITFN---AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQ 427 (486)
Q Consensus 359 V~~--sh~~l~~~---~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~ 427 (486)
|++ +|.++... .......+++ ..+++++..+|++|.+++. ..+.++..|+++++.+. ++....+.+.
T Consensus 172 v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 244 (511)
T PRK13391 172 IKRPLPEQPPDTPLPLTAFLQRLWGF-RSDMVYLSPAPLYHSAPQR-AVMLVIRLGGTVIVMEHFDAEQYLALIE 244 (511)
T ss_pred EEEccccchhhhhhHHHHHHHHhcCC-CCCCeEEEcCCHHHHHHHH-HHHHHHHcCceEEECCCCCHHHHHHHHH
Confidence 995 46665432 2333344555 5778999999999998874 45678889999988754 4334444433
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=173.99 Aligned_cols=186 Identities=20% Similarity=0.210 Sum_probs=150.4
Q ss_pred ehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 203 CLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 203 ~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
||++++++++++|..|.+.|++++++|+++++++.++++.++|+++.|++.+|+++..+.+++..++..++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred hHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEec
Q psy2842 283 KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLS 362 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s 362 (486)
... . .+ ....+.++....... .........+++++++|||||||.||+|+++
T Consensus 81 ~~~--------~------~~---------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s 132 (436)
T TIGR01923 81 LEE--------K------DF---------QADSLDRIEAAGRYE-----TSLSASFNMDQIATLMFTSGTTGKPKAVPHT 132 (436)
T ss_pred ccc--------c------ce---------eecchHhhhhccccc-----ccccccCCcCceEEEEeCCCCCCCCcEEEEe
Confidence 110 0 00 001111111111000 0001133467899999999999999999999
Q ss_pred hHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC
Q psy2842 363 HDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 418 (486)
Q Consensus 363 h~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~ 418 (486)
|+++...+......+++ .++|++++.+|++|..++ ..++.++..|+++++.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~ 186 (436)
T TIGR01923 133 FRNHYASAVGSKENLGF-TEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKF 186 (436)
T ss_pred hHHHHHHHHHHHhhcCC-CCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchH
Confidence 99999888888888887 678999999999999887 4678999999999998653
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=180.13 Aligned_cols=228 Identities=18% Similarity=0.107 Sum_probs=144.7
Q ss_pred eecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChh-----HHHHHHHHhhcCCCCeEEEEecCC
Q psy2842 233 GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-----QLEKILKVKAQCPKLKAIVQYEGK 307 (486)
Q Consensus 233 ~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~-----~~~~~~~~~~~~~~~~~iv~~~~~ 307 (486)
++|++++++.++||+++|++.+|+++..+.+++.++++.++++++++++.. ..+.+..+....+ .+.+++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 368889999999999999999999999999999999999999999997641 1112222222112 2223322111
Q ss_pred CC-----CCCcccHHHHHHhccCCCc-hhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCC
Q psy2842 308 PD-----KPGVISWDELMELGRAAPD-ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381 (486)
Q Consensus 308 ~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 381 (486)
.. .....+|+++...+..... ...........++++++|+|||||||.||||+++|+|+..+.......+++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~ 158 (499)
T PLN03051 80 EPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDI-Q 158 (499)
T ss_pred cccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCC-C
Confidence 10 0123456666532211000 000000011245899999999999999999999999988766555556666 6
Q ss_pred CCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC--ChHHHHHHHHHH------HhhhhHHHHhhhcc--cccccccc
Q psy2842 382 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK--NALKVYKATQAA------IDRANLKSISNAQK--IQKFEFLP 451 (486)
Q Consensus 382 ~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~--~~~~~~~~i~~~------i~~~~~~~l~~~~~--i~~~~l~p 451 (486)
.+|++++.+|++|.+++ ..++.++..|+++++.+. ++..+++.+.+. ..+..+..+...+. .....+.+
T Consensus 159 ~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~ 237 (499)
T PLN03051 159 PGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSK 237 (499)
T ss_pred CCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchh
Confidence 78999999999999986 467889999999988753 333444444331 11222333433321 22234444
Q ss_pred cceeecCCCCCC
Q psy2842 452 ADFSIPTGELGP 463 (486)
Q Consensus 452 ~~~~~~~g~ltp 463 (486)
......+|+..+
T Consensus 238 Lr~i~~gG~~~~ 249 (499)
T PLN03051 238 LRVFASTGEASA 249 (499)
T ss_pred heEEEecCCCCC
Confidence 455556666554
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=176.10 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=151.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHH-------HHhhhh
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC-------LHCLVT 271 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l-------~~~~~~ 271 (486)
...+||.+++.++.++|.+|.+.|++++++|+++++++.++++.++||++.|++++|+++....+++ ..+++.
T Consensus 27 ~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (545)
T PRK07768 27 PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGM 106 (545)
T ss_pred ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999999999999999999999999988775444 456777
Q ss_pred CCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCC
Q psy2842 272 SDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSG 351 (486)
Q Consensus 272 ~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 351 (486)
++++++++++... .....+... .. ..+.++++...... .......+++++++||||
T Consensus 107 ~~~~~v~~~~~~~-~~~~~~~~~--~~-------------~~~~~~~l~~~~~~--------~~~~~~~~~~a~i~~TSG 162 (545)
T PRK07768 107 IGAKAVVVGEPFL-AAAPVLEEK--GI-------------RVLTVADLLAADPI--------DPVETGEDDLALMQLTSG 162 (545)
T ss_pred CCCCEEEecchhh-hhhhhhccc--CC-------------ceeehhhhcccCCC--------CcCCCCCCCEEEEEeCCC
Confidence 8999998876522 111111100 00 12334444332111 011345789999999999
Q ss_pred CCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 352 TEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 352 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|||.||||+++|+++..........+++...+|++++.+|++|..++...++.++..|+++++..+
T Consensus 163 tTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~ 228 (545)
T PRK07768 163 STGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTP 228 (545)
T ss_pred CCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCH
Confidence 999999999999999988877777777744448999999999999988788889999999988764
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=161.69 Aligned_cols=320 Identities=12% Similarity=0.135 Sum_probs=225.8
Q ss_pred eccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCCccceehhhhHhhHHH
Q psy2842 134 SGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKEYEANVRT 213 (486)
Q Consensus 134 ~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~~gel~~~~y~~~~~~ 213 (486)
.+--+.|.+..+.+++.| |++-++-.-+...... .-...+.|+|. ...++|+++.++.++
T Consensus 6 ~~ft~wP~~~a~~YR~~G------yW~d~~l~d~L~~~A~----------~~pdriAv~d~----~~~~sY~eLdqr~d~ 65 (542)
T COG1021 6 IGFTPWPEEFARRYREKG------YWQDRTLTDILTDHAA----------RYPDRIAVIDG----ERRLSYAELDQRADR 65 (542)
T ss_pred cCCCCCcHHHHHHHHhcC------cccCCcHHHHHHHHHh----------hcCCceEEecC----cccccHHHHHHHHHH
Confidence 344578888888888754 3333322111110000 01235677775 355999999999999
Q ss_pred HHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhH----HHHHH
Q psy2842 214 VAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ----LEKIL 289 (486)
Q Consensus 214 ~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~----~~~~~ 289 (486)
+|..|.+.|+++|+++.+..+|..++++.+++.++.|...|.--|.-...+|.+....++++.+++++... -....
T Consensus 66 LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar 145 (542)
T COG1021 66 LAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFAR 145 (542)
T ss_pred HHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999886522 23444
Q ss_pred HHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHH
Q psy2842 290 KVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 369 (486)
Q Consensus 290 ~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~ 369 (486)
....+.+.++++++.++.. .+.. .+..+...... .....+.++++++++..+.||||.||.|..+|....++
T Consensus 146 ~~~a~~~tlr~v~v~ge~~-~~~~-~~~~~~~~a~~------~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ys 217 (542)
T COG1021 146 ELVAKHPTLRHVIVAGEAE-HPSV-LEAALCHPAGL------FTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYS 217 (542)
T ss_pred HHHhhCCcceEEEEccCCC-Ccch-hhhhhhCcccc------CCcCCCCCCCceEEEEecCCCCCCCccccccccceeee
Confidence 5677889999888874332 1111 11111111111 11122456788999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC-ChHHHHHHHHHH------HhhhhHHHHhhh
Q psy2842 370 AACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK-NALKVYKATQAA------IDRANLKSISNA 441 (486)
Q Consensus 370 ~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~------i~~~~~~~l~~~ 441 (486)
.....+.+++ ..++++++.+|..|-+.+.+ +.+..+..|+++++.+. ++...+..|++. +.+.-..-++.+
T Consensus 218 v~aSaEiC~~-~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa 296 (542)
T COG1021 218 VRASAEICGF-DQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQA 296 (542)
T ss_pred eeehhhhhCc-CccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHh
Confidence 9988889998 78999999999999887654 67888999999999654 666666666652 223333334444
Q ss_pred cccccccccccceeecCCC-CCCcccccchHHHHHHHHHHHhhhc
Q psy2842 442 QKIQKFEFLPADFSIPTGE-LGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 442 ~~i~~~~l~p~~~~~~~g~-ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
-.-...++++..+-..+|. +.++ +.|+ |...+...+++.|+
T Consensus 297 ~e~~~~~LsSLrllQVGGarl~~~--~Arr-v~~~lgC~LQQVFG 338 (542)
T COG1021 297 AEWERADLSSLRLLQVGGARLSAT--LARR-VPAVLGCQLQQVFG 338 (542)
T ss_pred hhcccCCchheeEEeecCcccCHH--HHhh-chhhhCchHHHHhh
Confidence 4446666777776666554 3333 2333 55666666666553
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=173.56 Aligned_cols=204 Identities=17% Similarity=0.215 Sum_probs=150.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.+||.++.+.+++++..|.+.|++++++|+++++|+.++++.++|+++.|++.+|+++..+.+++.++++.+++++++
T Consensus 9 ~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~ 88 (509)
T PRK12406 9 DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLI 88 (509)
T ss_pred CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCC--------------CCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGK--------------PDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
++.... +.+. +..+....++..... ...+...+|++....... ......++++
T Consensus 89 ~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~a 155 (509)
T PRK12406 89 AHADLL-HGLA---SALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP---------YDGPPVPQPQ 155 (509)
T ss_pred Eccchh-hhhh---hhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCc---------cCCCCCCCce
Confidence 876532 2221 111111111111110 001223344444322111 0123467899
Q ss_pred EEEcCCCCCCCCceeEechHHHH---HHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNIT---FNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~---~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+++|||||||.||+|+++|.+.. .........+++ ..++++++.+|++|..+.... +.++..|+++++.+.
T Consensus 156 ~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~ 229 (509)
T PRK12406 156 SMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGL-KPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQPR 229 (509)
T ss_pred EEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCC-CCCceEEEEeCCcccchHHHH-HHHHhhheEEEEccC
Confidence 99999999999999999776543 333334455666 678899999999999886554 446788999888654
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=171.76 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=143.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++.+.++++|..|.+.|+.++++|+++++|+.++++.++|+++.|++.+|+++..+++++.+++..+++++++
T Consensus 22 ~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i 101 (501)
T PRK13390 22 GEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLV 101 (501)
T ss_pred CeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++... ......... ....+...... ....++++...... +. .....+.++|+|||||||.|||
T Consensus 102 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~--~~--------~~~~~~~a~i~~TSGTTG~PKg 165 (501)
T PRK13390 102 ASAALD-GLAAKVGAD---LPLRLSFGGEI--DGFGSFEAALAGAG--PR--------LTEQPCGAVMLYSSGTTGFPKG 165 (501)
T ss_pred Ecchhh-hHHHHhhhc---cceEEEecCcc--cccccHHHHhcccC--CC--------CCCCcccEEEEeCCCCCCCCCE
Confidence 876521 111111111 11122222111 12222333222110 00 0112346999999999999999
Q ss_pred eEe--chHHHHHHH----HHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VML--SHDNITFNA----ACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~--sh~~l~~~~----~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|++ +|.++.... ......+.+ ..++++++.+|++|.+++... +..+..|+++++.+.
T Consensus 166 V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~~~~~~ 228 (501)
T PRK13390 166 IQPDLPGRDVDAPGDPIVAIARAFYDI-SESDIYYSSAPIYHAAPLRWC-SMVHALGGTVVLAKR 228 (501)
T ss_pred EEeeccccccccchhhhHhhHHHHhCC-CCCCeEEecccchhhhHHHHH-HHHHhcCceEEEcCC
Confidence 995 555554321 112234555 678999999999999887544 345678999988765
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-18 Score=170.47 Aligned_cols=194 Identities=18% Similarity=0.224 Sum_probs=150.1
Q ss_pred ehhhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcC
Q psy2842 203 CLKEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 203 ~~~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
||.++.+..++++..|.+ .|++++++|+++++|+.++++.++|+++.|+.++|+++....+++.++++.++++++++++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 578999999999999987 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEe
Q psy2842 282 DKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVML 361 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~ 361 (486)
.... .+ ...+ . .+...... +............ . ......+++++++|||||||.||+|++
T Consensus 81 ~~~~-~~----~~~~-~-~~~~~~~~--------~~~~~~~~~~~~~---~--~~~~~~~~~~~i~~TSGTtG~pK~v~~ 140 (408)
T TIGR01733 81 ALAS-RL----AGLV-L-PIILVDPL--------ELAALDDAPAPPP---P--DAPSGPDDLAYVIYTSGSTGRPKGVVV 140 (408)
T ss_pred chhh-hc----cccC-C-ceEEechh--------hhhhccccccccc---c--cCCCCCCCcEEEEEcCCCCCCCCEEEe
Confidence 6321 11 0111 0 11111100 0000000000000 0 001346889999999999999999999
Q ss_pred chHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC
Q psy2842 362 SHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 418 (486)
Q Consensus 362 sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~ 418 (486)
+|+++..........+.. ..++++++..|++|..++ ..++.++..|+++++.+..
T Consensus 141 s~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~ 195 (408)
T TIGR01733 141 THRSLVNLLAWLARRYGL-DPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPED 195 (408)
T ss_pred ccHHHHHHHHHHHHhcCC-CCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChh
Confidence 999999988888887777 678999999999999876 5789999999999987764
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-20 Score=179.61 Aligned_cols=198 Identities=20% Similarity=0.257 Sum_probs=170.3
Q ss_pred eccCceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHH
Q psy2842 18 TEPHGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYM 96 (486)
Q Consensus 18 ~~~~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (486)
..++.|+...++.|.. |+|.++++|++|..+.+.-
T Consensus 307 p~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~-------------------------------------------- 342 (596)
T KOG1177|consen 307 PAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIP-------------------------------------------- 342 (596)
T ss_pred eCCCCChHHHHHHHHhhceEEEecChHHHHHHhcch--------------------------------------------
Confidence 3567899999999999 9999999999999988542
Q ss_pred HHhhhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCC-ceeccccccccccccccCCCCC
Q psy2842 97 AYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDI-PICEVFGMSECAGAHTVSAPDD 174 (486)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~-~i~~~yG~TE~~~~~~~~~~~~ 174 (486)
....++++++|.++.||+|+|+++.+.... +++ .+.-+||+|||++..++..+++
T Consensus 343 -----------------------~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D 399 (596)
T KOG1177|consen 343 -----------------------QKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGD 399 (596)
T ss_pred -----------------------hhccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCC
Confidence 124466799999999999999999999887 665 3788999999999998887776
Q ss_pred C---CcCccccccCCceEEEECCCCC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchh
Q psy2842 175 F---KLDGVGRTIPGTQTKIVDPDEE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWF 240 (486)
Q Consensus 175 ~---~~~s~G~p~p~~~~~i~d~~~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~ 240 (486)
. +..|+|+.+++.|.+|+|.+|. ..|+++.| +||.+.+++.+...++ +|..+||++..++++.
T Consensus 400 ~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~d---rW~~TGDi~~m~enG~ 476 (596)
T KOG1177|consen 400 PPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGND---RWYDTGDIAVMDENGT 476 (596)
T ss_pred CHHHHHhhhhhcccccccccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccc---cceecCceEEEcCCCc
Confidence 5 6789999999999999998776 67898876 6688888888776554 4999999999999999
Q ss_pred hhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhHHHH
Q psy2842 241 YSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEK 287 (486)
Q Consensus 241 ~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~~~ 287 (486)
+.++| +|..||.+ |+|.+.|+-+..+..+.++.+|.++|+..++.
T Consensus 477 i~iVGRskdmI~rGGEN--VyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~ 525 (596)
T KOG1177|consen 477 IEIVGRSKDMIIRGGEN--VYPTELEDFLNKHPLVKEAHVVGVPDERLGEE 525 (596)
T ss_pred EEEEEcccCeEEeCCcc--cChHHHHHHHhhCCCeeeEEEEccCCCcccce
Confidence 99888 77779999 89999999999999999999999999865543
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=172.46 Aligned_cols=193 Identities=19% Similarity=0.273 Sum_probs=153.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||.+++..+.+++..|.+.|+.++++|+++.+++.++++.++|+++.|+.++|+++..+.+++.++++..++++++
T Consensus 25 ~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (503)
T PRK04813 25 GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLII 104 (503)
T ss_pred CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++.. .....+ ..+.++++......... .........++.++++|||||||.||+
T Consensus 105 ~~~~~~--------~~~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~ 160 (503)
T PRK04813 105 ATEELP--------LEILGI-------------PVITLDELKDIFATGNP---YDFDHAVKGDDNYYIIFTSGTTGKPKG 160 (503)
T ss_pred eccccc--------ccccCC-------------cEEehHHhhhhhhcccc---ccccccCCCCCcEEEEECCCCCCCCcE
Confidence 987520 000001 11122222211100000 000112356789999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|.++|+++..........+.+ ..++++++.+|++|..+. ..++.++..|+++++.+.
T Consensus 161 v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~~ 217 (503)
T PRK04813 161 VQISHDNLVSFTNWMLEDFAL-PEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALPK 217 (503)
T ss_pred EEeehHHHHHHHHHHHHHcCC-CcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEcCh
Confidence 999999999888877777777 678999999999998876 567789999999988775
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-17 Score=180.15 Aligned_cols=215 Identities=10% Similarity=0.107 Sum_probs=149.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++..+++++|..|.+.|++++++|+++++|++++++.++|++++|++++|++|. +++.++++.+++++++
T Consensus 470 ~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li 546 (994)
T PRK07868 470 GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEII 546 (994)
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEE
Confidence 4689999999999999999999999999999999999999999999999999999999995 6899999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCC----C---CcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----P---GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSG 351 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 351 (486)
++++. .+.+.. . ...+++.++.... + ....++++.......+. . .......++++++|+|| |
T Consensus 547 ~~~~~-~~~~~~----~--~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~dd~a~IiyT-g 615 (994)
T PRK07868 547 TDPTN-LEAARQ----L--PGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPG--W-YRPNPGLARDLAFIAFS-T 615 (994)
T ss_pred EChHH-HHHHHh----c--CceEEEecCCccccccCCcchhhhhhhhcCcccccCCc--c-cCCCCCCCCccEEEEEe-C
Confidence 97652 222221 1 1334544432110 0 01111111000000000 0 00011235889999998 5
Q ss_pred CCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHH
Q psy2842 352 TEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQA 428 (486)
Q Consensus 352 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~ 428 (486)
|||.||++.++|.+...........+++ ..+|++++.+|++|.+++...++.++..|+++++.+. ++..+.+.+.+
T Consensus 616 StgtpKpk~vt~~~~~~~~~~~~~~~~l-~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~ 692 (994)
T PRK07868 616 AGGELVAKQITNYRWALSAFGTASAAAL-DRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQ 692 (994)
T ss_pred CCCCcCcEEEehHHHHHHHHhhhhhcCC-CCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHH
Confidence 7888888888887765544444455666 6789999999999999987777777888888777654 44455555443
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-17 Score=149.15 Aligned_cols=185 Identities=14% Similarity=0.064 Sum_probs=133.2
Q ss_pred ceehhhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 201 EICLKEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 201 el~~~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
++||+++.+...++++.|.+ .|+++|++|+++++|+.++++.++|++++|++.+|++ .++++++++
T Consensus 27 ~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~ 93 (227)
T TIGR03089 27 ELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLAG-------------DPDADVVVT 93 (227)
T ss_pred EEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEe
Confidence 69999999999999999987 6999999999999999999999999999999999995 678899999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEe-----cC--C-CCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCC
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQY-----EG--K-PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSG 351 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~-----~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 351 (486)
+++. .+.+. .+ +.++.. .. . ...++..+|.+......... +. .....++|++.|+||||
T Consensus 94 ~~~~-~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~D~a~l~yTsg 160 (227)
T TIGR03089 94 GPDR-LAAAA-----GS--GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQF----AP-YEPPDATAPALVAGGGE 160 (227)
T ss_pred Ccch-hhhcc-----cC--CceEEEeccccccCCCCCCCCcccchhhhhhccCCCC----CC-CCCCCCCcceeeecccc
Confidence 8762 22221 12 223322 11 0 11223345555444211110 00 00234589999999998
Q ss_pred CCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHH
Q psy2842 352 TEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKAT 426 (486)
Q Consensus 352 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i 426 (486)
+ +|+++..+. ...++ .++|+++ .+|++|++|+...++.++..|+|+++.++ ++..+++.+
T Consensus 161 ~---------~~~~~~~~~----~~~~l-~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i 221 (227)
T TIGR03089 161 W---------TGAELVAAA----RAAGL-PPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIA 221 (227)
T ss_pred c---------cHHHHHHHH----hhcCC-CCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHH
Confidence 5 566665544 45556 6789999 99999999998999999999999888755 444444443
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-18 Score=186.72 Aligned_cols=156 Identities=16% Similarity=0.205 Sum_probs=133.2
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC--
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
..+++++||.+++||+|+++++.+++++ +|++++++||+||+++.++...+. ....+++|+|+|+++++|+|++|.
T Consensus 375 ~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~ 454 (647)
T PTZ00237 375 SKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKEL 454 (647)
T ss_pred cccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCC
Confidence 3456799999999999999999999988 799999999999998665544332 234589999999999999998765
Q ss_pred ---Cccceeh---------hhhHhhHHHHHHHHHH-cCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 198 ---GNGEICL---------KEYEANVRTVAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 198 ---~~gel~~---------~~y~~~~~~~a~~l~~-~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
+.|||.+ .+||++++++++.|.. .| |+++||++..+.++++.++| +++.||.. |+|.+
T Consensus 455 ~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g---~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~r--I~p~e 529 (647)
T PTZ00237 455 NVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPG---YYNSGDLGFKDENGYYTIVSRSDDQIKISGNK--VQLNT 529 (647)
T ss_pred CCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCC---EEECCcEEEECCCCeEEEEeccCCEEEECCEE--eCHHH
Confidence 5688876 4799999999988854 45 89999999999999999988 78899998 79999
Q ss_pred CHHHHHHhhhhCCceEEEEcCh
Q psy2842 261 SPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.|+.+..+..+.++.++..+++
T Consensus 530 IE~~l~~~p~V~eaavvg~~~~ 551 (647)
T PTZ00237 530 IETSILKHPLVLECCSIGIYDP 551 (647)
T ss_pred HHHHHHhCCCceeeEEEeeEcC
Confidence 9999999999999999988876
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-18 Score=181.48 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=132.3
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CC---CceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LD---IPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g---~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
.+++++||.+++||+|+++++.+++.+ +| +++.+.||+||+++....+.+. ..+++++|+|+||++++|+|++|
T Consensus 393 ~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g 472 (666)
T PLN02654 393 RHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 472 (666)
T ss_pred cCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCC
Confidence 456689999999999999999999887 77 7899999999998776655443 34789999999999999999876
Q ss_pred C-----Cccceehh--------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 197 E-----GNGEICLK--------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 197 ~-----~~gel~~~--------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
. ..|+++++ +||++++++++.+.+. ...|.++||++..+.++++.++| +++.+|.. |+|.
T Consensus 473 ~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~-~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~r--i~p~ 549 (666)
T PLN02654 473 KEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKP-FAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHR--IGTA 549 (666)
T ss_pred CCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhc-CCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEE--ECHH
Confidence 5 35888764 7999999888766431 12399999999999999999998 78889988 7999
Q ss_pred CCHHHHHHhhhhCCceEEEEcCh
Q psy2842 260 NSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.|..+..+..+.++.++..+++
T Consensus 550 EIE~~l~~~p~V~eaaVvg~~d~ 572 (666)
T PLN02654 550 EVESALVSHPQCAEAAVVGIEHE 572 (666)
T ss_pred HHHHHHHhCCCeeeEEEEeeEcC
Confidence 99999999999999999988876
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-18 Score=177.64 Aligned_cols=153 Identities=19% Similarity=0.198 Sum_probs=125.8
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCC----------------------C-CcCc
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDD----------------------F-KLDG 179 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~----------------------~-~~~s 179 (486)
+++++|.+++||+++++++.+++++ + |+++++.||+||+++.++.....+ . ...+
T Consensus 286 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (563)
T PLN02860 286 VFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVC 365 (563)
T ss_pred cccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcc
Confidence 3479999999999999999999988 6 799999999999986554332111 1 1237
Q ss_pred cccccCCceEEEECCCCCCccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHc
Q psy2842 180 VGRTIPGTQTKIVDPDEEGNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYA 249 (486)
Q Consensus 180 ~G~p~p~~~~~i~d~~~~~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~ 249 (486)
+|+|+|+++++|++++.++.||+.++ ||+++++.+++.+..+| |.++||++..+.++++.++| +++.
T Consensus 366 vG~p~~~~~v~i~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g---~~~TGDl~~~d~dG~l~~~GR~~d~i~~ 442 (563)
T PLN02860 366 VGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDG---WLDTGDIGWIDKAGNLWLIGRSNDRIKT 442 (563)
T ss_pred cCCccCCcEEEEecCCCCceeEEEEecCcccccccCCccccchhccCCC---eEEccceEEEcCCCCEEEeecccceeEE
Confidence 89999999999998775567887764 89999999988886677 99999999999999988888 6778
Q ss_pred CCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 250 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 250 gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+|.. ++|.+.|+.+..+..+.++.++..+++
T Consensus 443 ~G~~--v~p~eIE~~l~~~p~V~~~~v~~~~~~ 473 (563)
T PLN02860 443 GGEN--VYPEEVEAVLSQHPGVASVVVVGVPDS 473 (563)
T ss_pred CCEE--ccHHHHHHHHHhCCCcceeEEEEEecC
Confidence 8888 688888888888888888888777665
|
|
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-16 Score=157.21 Aligned_cols=222 Identities=17% Similarity=0.154 Sum_probs=167.5
Q ss_pred eehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcC
Q psy2842 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 202 l~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
++|.++.+...++|..+.+.|+++||+|.+.+++.+++++.++||.++|.+.+++....+..++...+..++++++++.+
T Consensus 97 ~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d 176 (626)
T KOG1175|consen 97 WTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQD 176 (626)
T ss_pred EEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEe
Confidence 89999999999999999988999999999999999999999999999999999999999999999999999999999876
Q ss_pred hh--------HHHHHHHHhhcCCCC----eEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcC
Q psy2842 282 DK--------QLEKILKVKAQCPKL----KAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYT 349 (486)
Q Consensus 282 ~~--------~~~~~~~~~~~~~~~----~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T 349 (486)
.. ....+.......+.. ...+.+.... ....|++++........ ....+.+|+.+|+||
T Consensus 177 ~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~a~~~~~------~~~~~~edpl~IlfT 247 (626)
T KOG1175|consen 177 VVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN---RDLFWSLELKKASPEHP------CVPVKAEDPLFILFT 247 (626)
T ss_pred eeccCCCccchhhhHHHHhhcccccccccceeeEEeccc---ccccHHHHhhhcCCCCC------ceecCccCceEEEec
Confidence 41 112222222222211 1111111111 14456666554443322 335678999999999
Q ss_pred CCCCCCCceeEechHHHHHHHHH-HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHHHHHHH
Q psy2842 350 SGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQA 428 (486)
Q Consensus 350 SGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~ 428 (486)
|||||.|||+.+++....-.... ...+++. .++|+..+...+.|+.|.++.++.+|..|+++++.+..+. ....+.+
T Consensus 248 SGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~-q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~-~~~~~~~ 325 (626)
T KOG1175|consen 248 SGTTGKPKGVIHTTGGYLLGAALTSRYHFDL-QPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPF-DPGRIWK 325 (626)
T ss_pred CCCCCCCCceeeccCcchHHHhhhcceeccC-CCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCC-Chhhhhh
Confidence 99999999999999887654443 4444556 7899999999999999999999999999999999876443 3344444
Q ss_pred HHhhhh
Q psy2842 429 AIDRAN 434 (486)
Q Consensus 429 ~i~~~~ 434 (486)
.++++.
T Consensus 326 ~v~k~~ 331 (626)
T KOG1175|consen 326 ILDKYK 331 (626)
T ss_pred hHhhcc
Confidence 444444
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-17 Score=175.39 Aligned_cols=153 Identities=20% Similarity=0.277 Sum_probs=127.2
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
.+++++|.+++||+++++++.+++++ +|.+++++||+||+++.++.+.+. ...++++|+|+|+++++|+|+++.
T Consensus 320 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~ 399 (570)
T PRK04319 320 YDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPP 399 (570)
T ss_pred CCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCC
Confidence 34589999999999999999999998 799999999999998766544433 346789999999999999998764
Q ss_pred -Cccceehh--------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 -GNGEICLK--------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 -~~gel~~~--------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
+.||+.++ +|+++++.+++.+. +| |.++||++..+.++.+.++| +++.+|.. |+|.+.|..
T Consensus 400 g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~g---w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~--i~p~eIE~~ 473 (570)
T PRK04319 400 NRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GD---WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGER--VGPFEVESK 473 (570)
T ss_pred CCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CC---ceEeCcEEEECCCeeEEEEecCCCEEEECCEE--ECHHHHHHH
Confidence 46887763 89999999998885 55 89999999999999888888 66788887 688888888
Q ss_pred HHHhhhhCCceEEEEcCh
Q psy2842 265 CLHCLVTSDANICVVEDD 282 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~ 282 (486)
+..+..+.++.++..+++
T Consensus 474 l~~~~~V~~~~v~g~~~~ 491 (570)
T PRK04319 474 LMEHPAVAEAGVIGKPDP 491 (570)
T ss_pred HhhCCCeeecceecccCc
Confidence 888877777777666554
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-17 Score=174.15 Aligned_cols=153 Identities=19% Similarity=0.331 Sum_probs=129.9
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----C
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-----G 198 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-----~ 198 (486)
+++++|.+++||+++++++.+.|++ +|+++++.||+||+++.++........++++|+|+|+++++|+|+++. +
T Consensus 324 ~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~ 403 (562)
T PRK05677 324 DFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGE 403 (562)
T ss_pred ChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEECCCCCCCCCCC
Confidence 3478999999999999999999998 799999999999998777666555557789999999999999998764 4
Q ss_pred ccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.||+.++ ||+++++.+++.|..+| |.++||++..+.++.+.+.| +++.+|.. |+|.+.|+.+..+
T Consensus 404 ~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g---~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~--i~p~eiE~~l~~~ 478 (562)
T PRK05677 404 VGELCVKGPQVMKGYWQRPEATDEILDSDG---WLKTGDIALIQEDGYMRIVDRKKDMILVSGFN--VYPNELEDVLAAL 478 (562)
T ss_pred CeEEEEecCccchhhcCCchhhhhccCCCC---cccccceEEECCCCcEEEEecCcCeEEeCCEE--ECHHHHHHHHHhC
Confidence 6888765 89999999998886666 89999999999999888877 66777877 7888888888888
Q ss_pred hhhCCceEEEEcCh
Q psy2842 269 LVTSDANICVVEDD 282 (486)
Q Consensus 269 ~~~~~~~vvi~~~~ 282 (486)
..+.++.++.++++
T Consensus 479 ~~v~~~~v~g~~~~ 492 (562)
T PRK05677 479 PGVLQCAAIGVPDE 492 (562)
T ss_pred CCccEEEEEeccCc
Confidence 88888877777654
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-17 Score=175.06 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=128.4
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CC---CceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LD---IPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g---~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
..++++||.+++||+++++++.+++.+ ++ +++++.||+||+++.++...+. ..+++++|+|+||++++|+|++|
T Consensus 354 ~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g 433 (625)
T TIGR02188 354 KHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEG 433 (625)
T ss_pred cCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCC
Confidence 345689999999999999999999987 54 7899999999998776554432 34679999999999999999765
Q ss_pred C------Cccceeh--------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCC
Q psy2842 197 E------GNGEICL--------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYT 258 (486)
Q Consensus 197 ~------~~gel~~--------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~ 258 (486)
. +.||+.+ ++||++++++.+.+.. ....|+++||++..+.++++.++| +++.+|.. |+|
T Consensus 434 ~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~-~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~r--i~p 510 (625)
T TIGR02188 434 NPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFS-PFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHR--LGT 510 (625)
T ss_pred CCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhc-cCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEE--ECH
Confidence 4 3576665 4799999988877643 122389999999999999998888 67888888 788
Q ss_pred CCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 259 TNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 259 ~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.+.|+.+..+..+.++.++..+++
T Consensus 511 ~eIE~~l~~~p~V~e~~vvg~~~~ 534 (625)
T TIGR02188 511 AEIESALVSHPAVAEAAVVGIPDD 534 (625)
T ss_pred HHHHHHHHhCCCcceEEEEeeEcC
Confidence 888888888888888888877765
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-17 Score=170.57 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=124.5
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C--CCceeccccccccccccccCCCC----------CCCcCccccccCCceEE
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L--DIPICEVFGMSECAGAHTVSAPD----------DFKLDGVGRTIPGTQTK 190 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~--g~~i~~~yG~TE~~~~~~~~~~~----------~~~~~s~G~p~p~~~~~ 190 (486)
.+++++|.+++||+++++++.+++++ + |+++++.||+||+++.++..... .....++|+|+|+++++
T Consensus 285 ~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 364 (552)
T PRK09274 285 IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVR 364 (552)
T ss_pred CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEE
Confidence 35589999999999999999999998 6 57999999999998765543221 11234799999999999
Q ss_pred EECCCC---------C-----Cccceehh------hhHhhHHHHHHHHHHcCC-cccceEEEEeecCCchhhhhHH----
Q psy2842 191 IVDPDE---------E-----GNGEICLK------EYEANVRTVAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLG---- 245 (486)
Q Consensus 191 i~d~~~---------~-----~~gel~~~------~y~~~~~~~a~~l~~~g~-~~~~~vg~~~~~~~~~~~~~~g---- 245 (486)
|+|+++ . +.||+.++ ||+++++.++..+..++. ..|.+|||++..+.++.+.+.|
T Consensus 365 ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d 444 (552)
T PRK09274 365 IIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAH 444 (552)
T ss_pred EEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCC
Confidence 998421 1 46888874 899999988876633211 2599999999999999888888
Q ss_pred HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 246 ~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+++.+|.. ++|.+.|..+..+..+.++.++..+++
T Consensus 445 ~i~~~G~~--v~p~eIE~~l~~~p~V~~~~v~~~~~~ 479 (552)
T PRK09274 445 RVETAGGT--LYTIPCERIFNTHPGVKRSALVGVGVP 479 (552)
T ss_pred eEEECCEE--ECcHHHHHHHHhCcccceeEEEEeCCC
Confidence 77888888 688888888888888888888877654
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-17 Score=169.15 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=120.4
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C--CCceeccccccccccccccCCC-CCCCcCccccccCCceEEEECCCCC--
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L--DIPICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~--g~~i~~~yG~TE~~~~~~~~~~-~~~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
.++++||.+++||+++++++.+++++ + +++++++||+||+++.++.... ...+.+++|+|.++++++|+|+++.
T Consensus 233 ~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~ 312 (499)
T PLN03051 233 LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPY 312 (499)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCC
Confidence 45589999999999999999998887 4 4789999999998754433222 2335689999999999999998765
Q ss_pred -----Cccceehh--------hhHhhHHHHHHHHHHcCC-------cccceEEEEeecCCchhhhhHH----HhHcCCee
Q psy2842 198 -----GNGEICLK--------EYEANVRTVAKAFLKLGL-------ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFA 253 (486)
Q Consensus 198 -----~~gel~~~--------~y~~~~~~~a~~l~~~g~-------~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~ 253 (486)
..||++++ +|++++ ..+ .+. +|. ..|.+|||++..+.++++.++| +++.||..
T Consensus 313 ~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~~~-~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~ 389 (499)
T PLN03051 313 PDDQPCVGEVALAPPMLGASDRLLNAD-HDK-VYY-KGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIK 389 (499)
T ss_pred CCCCCcceEEEEecCcCCCCccccCCc-ccc-eee-ecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEE
Confidence 24888764 677654 222 231 232 1257999999999999999988 88999998
Q ss_pred eecCCCCCHHHHHH-hhhhCCceEEEEcCh
Q psy2842 254 AGMYTTNSPEACLH-CLVTSDANICVVEDD 282 (486)
Q Consensus 254 vpi~~~~~~~~l~~-~~~~~~~~vvi~~~~ 282 (486)
|+|.+.|+.+.. +..+.++.++.++++
T Consensus 390 --v~p~EIE~~l~~~~p~V~~aavvg~~d~ 417 (499)
T PLN03051 390 --TSSVEIERACDRAVAGIAETAAVGVAPP 417 (499)
T ss_pred --CCHHHHHHHHHhcCCCcceEEEEEecCC
Confidence 799999999985 888899999888876
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-17 Score=172.12 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=127.7
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC----CCCcCccccccCCceEEEECC-CC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDP-DE 196 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~----~~~~~s~G~p~p~~~~~i~d~-~~ 196 (486)
.+++++||.+++||+++++++.+++++ +|.++++.||+||++..++...+. ..+.+++|+|+||++++|+|+ ++
T Consensus 350 ~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g 429 (628)
T TIGR02316 350 KHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATG 429 (628)
T ss_pred cCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCC
Confidence 456789999999999999999999988 799999999999998554333221 235789999999999999997 34
Q ss_pred C-----Cccceeh---------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCC
Q psy2842 197 E-----GNGEICL---------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYT 258 (486)
Q Consensus 197 ~-----~~gel~~---------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~ 258 (486)
. +.|++.+ .+|+++++++.+.+...--..|.++||++..+.++++.++| +++.+|.. |+|
T Consensus 430 ~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~r--v~~ 507 (628)
T TIGR02316 430 RPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHR--LGT 507 (628)
T ss_pred CCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEE--eCH
Confidence 3 4677765 46788888776655321113489999999999999998888 78899988 799
Q ss_pred CCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 259 TNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 259 ~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.+.|..+..+..+.++.++.++++
T Consensus 508 ~eIE~~l~~~p~V~ea~Vvg~~d~ 531 (628)
T TIGR02316 508 REIEESVSSHPSVAEVAVVGVHDE 531 (628)
T ss_pred HHHHHHHHhCCCcceEEEEeeecC
Confidence 999999999999999999888776
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-17 Score=171.45 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=115.6
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCC-CCcCccccccCCceEEEECCCCC----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~-~~~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
++++||.+++||+++++++.+++++ + ++.++++||+||+++.++.+.... ...+++|+|+++++++|+|+++.
T Consensus 297 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~ 376 (539)
T PRK06334 297 CLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVS 376 (539)
T ss_pred ccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCC
Confidence 4589999999999999999999988 6 789999999999987766554332 34578999999999999986532
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.||+.++ ||+++++..+ +...+-..|++|||++..+.++++.+.| +++.+|.. |+|.+.|+.+
T Consensus 377 ~g~~Gel~v~g~~~~~GY~~~~~~~~--~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~--v~p~eIE~~l 452 (539)
T PRK06334 377 SGETGLVLTRGTSLFSGYLGEDFGQG--FVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEM--VSLEALESIL 452 (539)
T ss_pred CCceEEEEEecCcccccccCCccccc--ceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEE--ECHHHHHHHH
Confidence 46788764 8999887533 2111112499999999999999998888 78889988 6888888888
Q ss_pred HHhhhhCC
Q psy2842 266 LHCLVTSD 273 (486)
Q Consensus 266 ~~~~~~~~ 273 (486)
..+..+.+
T Consensus 453 ~~~~~v~~ 460 (539)
T PRK06334 453 MEGFGQNA 460 (539)
T ss_pred HHccCCcc
Confidence 88877765
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-17 Score=170.18 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=124.8
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCC--CCCCcCccccccCCceEEEECC-CCC--
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAP--DDFKLDGVGRTIPGTQTKIVDP-DEE-- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~--~~~~~~s~G~p~p~~~~~i~d~-~~~-- 197 (486)
+++++|.+++||+++++++.+++.+ + ++.++++||+||+++..+.... ...+.+++|+|+|+++++|+|+ ++.
T Consensus 317 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~ 396 (560)
T PLN02574 317 VLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL 396 (560)
T ss_pred ccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCC
Confidence 4589999999999999999999887 6 7899999999999865543222 2246789999999999999994 332
Q ss_pred ---Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 ---GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ---~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
+.||++++ ||+++++.+++.+..+| |.++||++..+.++++.++| +++.+|.. +++.+.|..
T Consensus 397 ~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g---~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~--v~~~eiE~~ 471 (560)
T PLN02574 397 PPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDG---WLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQ--IAPADLEAV 471 (560)
T ss_pred CCCCCeEEEEECcchhhhhcCChhHhhhhccCCC---CcccceEEEEECCCeEEEEecchhheEECCEE--ECHHHHHHH
Confidence 56888875 89999999998887677 99999999999999888887 77888887 688888888
Q ss_pred HHHhhhhCCceEEEEcCh
Q psy2842 265 CLHCLVTSDANICVVEDD 282 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~ 282 (486)
+..+..+.++.++..+++
T Consensus 472 l~~~~~V~~~~v~~~~~~ 489 (560)
T PLN02574 472 LISHPEIIDAAVTAVPDK 489 (560)
T ss_pred HHhCCCcceEEEEccccC
Confidence 887777777777766554
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-16 Score=171.64 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=126.9
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CC---CceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LD---IPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEE 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g---~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~ 197 (486)
.++++||.+++||+++++++.+++.+ ++ +++++.||+||+++.++...+. ..+++++|+|+||++++|+|+++.
T Consensus 364 ~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~ 443 (637)
T PRK00174 364 YDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGN 443 (637)
T ss_pred CCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCC
Confidence 45689999999999999999999987 65 7899999999998766544332 335789999999999999998764
Q ss_pred -----Cccceehh--------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 198 -----GNGEICLK--------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 198 -----~~gel~~~--------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
+.||+.++ +|+++++++.+.+... ...|+++||++..+.++++.++| +++.+|.. |+|.+
T Consensus 444 ~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~-~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~--v~p~e 520 (637)
T PRK00174 444 PLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFST-FKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHR--LGTAE 520 (637)
T ss_pred CCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcC-CCCEEECCceEEEcCCCcEEEEEecccEEEeCCEE--ECHHH
Confidence 56777654 7999999888766321 12389999999999999998888 77888887 78888
Q ss_pred CHHHHHHhhhhCCceEEEEcCh
Q psy2842 261 SPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.|..+..+..+.++.++..+++
T Consensus 521 IE~~l~~~~~V~~~~Vvg~~~~ 542 (637)
T PRK00174 521 IESALVAHPKVAEAAVVGRPDD 542 (637)
T ss_pred HHHHHHhCCCcceEEEEeeEcC
Confidence 8888888888888877777654
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-16 Score=168.01 Aligned_cols=154 Identities=21% Similarity=0.366 Sum_probs=123.9
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCC-CCcCccccccCCceEEEECCCCC----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~-~~~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
.+++++|.+++||+++++++.++|++ +|++++++||+||+++.++...... .+.+++|+|+|+++++|+|+++.
T Consensus 330 ~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~ 409 (562)
T PRK12492 330 LDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPL 409 (562)
T ss_pred ccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCC
Confidence 34588999999999999999999988 7999999999999987766544332 35689999999999999998765
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||+.++ +|+++++.+.+.|..+| |.++||++..+.++++.+.| +++.+|.. ++|.+.+..+.
T Consensus 410 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g---~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~--i~~~eIE~~l~ 484 (562)
T PRK12492 410 GERGELCIKGPQVMKGYWQQPEATAEALDAEG---WFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFN--VYPNEIEDVVM 484 (562)
T ss_pred CCceEEEEeCCccccccccCchhhhhcccCCC---ceecCcEEEECCCCeEEEecccCCeEEECCEE--ECHHHHHHHHH
Confidence 45888764 89999999888875555 89999999999999888887 66777776 67777777776
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+....++.++..+++
T Consensus 485 ~~~~v~~~~v~~~~~~ 500 (562)
T PRK12492 485 AHPKVANCAAIGVPDE 500 (562)
T ss_pred hCCCeeEEEEEeccCC
Confidence 6666666666655543
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-16 Score=171.29 Aligned_cols=152 Identities=24% Similarity=0.373 Sum_probs=123.3
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEE--CCCC---C
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIV--DPDE---E 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~--d~~~---~ 197 (486)
+++++|.+++||+++++++.+++++ +|++++++||+||++..++.+... ..+.+++|+|+|+++++++ |+++ .
T Consensus 331 ~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~ 410 (632)
T PRK07529 331 DISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLR 410 (632)
T ss_pred CccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccc
Confidence 4589999999999999999999998 799999999999998777666544 3378999999999999995 5544 1
Q ss_pred -----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 -----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 -----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.|||.++ ||++.. .....+..+| |++|||++..+.++++.+.| +++.||.. |+|.+.+
T Consensus 411 ~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~g---w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~--i~p~eIE 484 (632)
T PRK07529 411 DCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDG---WLNTGDLGRIDADGYFWLTGRAKDLIIRGGHN--IDPAAIE 484 (632)
T ss_pred cCCCCCceEEEEECCCccccccCCc-cccccccCCC---ceEcCcEEEEcCCceEEEEecccCEEEeCCEE--ECHHHHH
Confidence 56888764 788754 3444443444 99999999999999988888 77789988 7888889
Q ss_pred HHHHHhhhhCCceEEEEcCh
Q psy2842 263 EACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.+..+..+.++.++..+++
T Consensus 485 ~~l~~~p~V~~a~vvg~~d~ 504 (632)
T PRK07529 485 EALLRHPAVALAAAVGRPDA 504 (632)
T ss_pred HHHHhCCCeeEEEEEeccCC
Confidence 99988888888888877665
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-16 Score=182.02 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=124.5
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC----------CCCcCccccccCCceEEEEC
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD----------DFKLDGVGRTIPGTQTKIVD 193 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~----------~~~~~s~G~p~p~~~~~i~d 193 (486)
+++++|.+++||+++++++.+++++ +|+++++.||+||+++.++.+.++ ..+++++|+|+|+++++|+|
T Consensus 896 ~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d 975 (1146)
T PRK08633 896 MFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD 975 (1146)
T ss_pred cCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEc
Confidence 4588999999999999999999988 899999999999998776654322 12568999999999999999
Q ss_pred CCC-C-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecC
Q psy2842 194 PDE-E-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMY 257 (486)
Q Consensus 194 ~~~-~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~ 257 (486)
+++ . +.||+.++ ||+++++.+++.+.+..-..|.+|||++..+.++.+.+.| .++.+|.. ++
T Consensus 976 ~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~--v~ 1053 (1146)
T PRK08633 976 PETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEM--VP 1053 (1146)
T ss_pred CCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEE--EC
Confidence 653 2 56888764 8999999999888542223489999999999999988877 78889988 68
Q ss_pred CCCCHHHHHHhhh--hCCceEEEEcCh
Q psy2842 258 TTNSPEACLHCLV--TSDANICVVEDD 282 (486)
Q Consensus 258 ~~~~~~~l~~~~~--~~~~~vvi~~~~ 282 (486)
|.+.|+.+..+.. ..++.++..+++
T Consensus 1054 ~~eiE~~l~~~~~~~~~~~~v~~~~~~ 1080 (1146)
T PRK08633 1054 LGAVEEELAKALGGEEVVFAVTAVPDE 1080 (1146)
T ss_pred HHHHHHHHHhccCCCCceEEEEeccCC
Confidence 8888888877763 334555555554
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-17 Score=169.93 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=120.5
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
.++++||.+++||+++++++.+++.+ ++..+++.||+||++..+.....+ ...++++|+|+++++++|+|+++.
T Consensus 320 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~ 399 (549)
T PRK07788 320 YDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPR 399 (549)
T ss_pred CCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCC
Confidence 34589999999999999999999988 799999999999987655433322 235689999999999999998765
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||+.++ +|++++.. . . .+| |.++||++..+.++++.+.| +++.+|.. |+|.+.|+.+.
T Consensus 400 g~~Gel~v~g~~~~~gY~~~~~~--~-~-~~g---~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~--v~p~eIE~~l~ 470 (549)
T PRK07788 400 GVVGRIFVGNGFPFEGYTDGRDK--Q-I-IDG---LLSSGDVGYFDEDGLLFVDGRDDDMIVSGGEN--VFPAEVEDLLA 470 (549)
T ss_pred CCeEEEEEeCCCccccccCCCcc--c-c-cCC---ceecCceEEEcCCCCEEEeccCcceEEECCEE--ECHHHHHHHHH
Confidence 45777765 78877654 1 1 234 99999999999999988888 67788988 78888888888
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 471 ~~~~V~~~~v~~~~~~ 486 (549)
T PRK07788 471 GHPDVVEAAVIGVDDE 486 (549)
T ss_pred hCCCeeEEEEECCcCc
Confidence 8888888877776665
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-16 Score=172.30 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=120.7
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-Cccc
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-GNGE 201 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-~~ge 201 (486)
.++++||.+++||+++++++.++|++ +|++++++||+||+++.++.+.+...+.+++|+|+||++++++|+++. ..||
T Consensus 476 ~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~~~~~~Ge 555 (718)
T PRK08043 476 YDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEQGGR 555 (718)
T ss_pred ccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCCCCCCceE
Confidence 45689999999999999999999987 899999999999998777665554557899999999999999997754 4577
Q ss_pred eeh------hhhHh--hHHHH-------HHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 202 ICL------KEYEA--NVRTV-------AKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 202 l~~------~~y~~--~~~~~-------a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+++ .||++ +++.+ +..+..+| |.++||++..+.++++.+.| +++.+|.. |+|.+.|
T Consensus 556 l~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~g---w~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~--V~p~eIE 630 (718)
T PRK08043 556 LQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERG---WYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEM--VSLEMVE 630 (718)
T ss_pred EEEecCCccccccCCCCcccccccccccccccccCC---eEecCCEEEEcCCCcEEEEecCCCeeEeCcEE--cCHHHHH
Confidence 775 48887 34321 11121234 89999999999999998888 77888888 6777777
Q ss_pred HHHHHhhhhCCceEEEEcCh
Q psy2842 263 EACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.+..+....++.+++.+++
T Consensus 631 ~~l~~~~~~~~~avv~~~~~ 650 (718)
T PRK08043 631 QLALGVSPDKQHATAIKSDA 650 (718)
T ss_pred HHHHhCCccceEEEEEccCC
Confidence 77776666666666666554
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-16 Score=165.77 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=122.2
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC-----CCCcCccccccCCceEEEECCCCC-
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPDEE- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~-----~~~~~s~G~p~p~~~~~i~d~~~~- 197 (486)
.+++++|.+++||++++....+++..+|+++++.||+||++......+.. ..+.+++|+|++|++++|+|+++.
T Consensus 283 ~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~ 362 (540)
T PRK05857 283 ATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIG 362 (540)
T ss_pred CcCccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccC
Confidence 34589999999999999888876666899999999999987543322221 124689999999999999997653
Q ss_pred ----------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecC
Q psy2842 198 ----------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMY 257 (486)
Q Consensus 198 ----------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~ 257 (486)
+.||++++ ||+++++.+++.+. +| |.++||++..+.++.+.+.| .++.+|.. ++
T Consensus 363 ~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~-~g---~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~--v~ 436 (540)
T PRK05857 363 PTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI-DG---WVNTGDLLERREDGFFYIKGRSSEMIICGGVN--IA 436 (540)
T ss_pred ccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC-CC---ceeccceEEEcCCceEEEeccccccEecCCEE--EC
Confidence 35888764 79999988888773 55 99999999999999888877 77788877 68
Q ss_pred CCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 258 TTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|.+.|..+..+..+.++.++..+++
T Consensus 437 p~eIE~~l~~~~~V~~~~v~~~~~~ 461 (540)
T PRK05857 437 PDEVDRIAEGVSGVREAACYEIPDE 461 (540)
T ss_pred HHHHHHHHHhCCCeeEEEEEecCcc
Confidence 8888888888777777777777664
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-16 Score=162.15 Aligned_cols=152 Identities=18% Similarity=0.259 Sum_probs=121.9
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCC-----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
+++++|.+++||+++++++.+.+++.|+++.+.||+||++..++..... ..+.+++|+|+++++++|+|+++.
T Consensus 262 ~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g 341 (496)
T PRK06839 262 NLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVG 341 (496)
T ss_pred CCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCC
Confidence 4588999999999999999999998899999999999998755443322 236789999999999999998764
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
+.||++++ +|+++++.++..+ .+| |.++||++..+.++++.+.| .++.+|.. ++|...++.+..
T Consensus 342 ~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g---~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~--v~p~~iE~~l~~ 415 (496)
T PRK06839 342 EVGELLIRGPNVMKEYWNRPDATEETI-QDG---WLCTGDLARVDEDGFVYIVGRKKEMIISGGEN--IYPLEVEQVINK 415 (496)
T ss_pred CceEEEEECCCcchhhcCChHHHHHHH-cCC---CeeecceEEEcCCCcEEEeccccceEEECCEE--ECHHHHHHHHHh
Confidence 46788764 8999999888777 456 89999999999998887777 56677777 677777777777
Q ss_pred hhhhCCceEEEEcCh
Q psy2842 268 CLVTSDANICVVEDD 282 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~ 282 (486)
+....++.++..+++
T Consensus 416 ~~~v~~~~v~~~~~~ 430 (496)
T PRK06839 416 LSDVYEVAVVGRQHV 430 (496)
T ss_pred CCCeeEEEEEecccc
Confidence 666666666665554
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-16 Score=167.96 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=124.7
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCC----CCCCcCccccccCCceEEEECC-CC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAP----DDFKLDGVGRTIPGTQTKIVDP-DE 196 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~----~~~~~~s~G~p~p~~~~~i~d~-~~ 196 (486)
.+++++||.+++||+++++++.+++.+ +++++++.||+||+++.+....+ ...+++++|+|+|+++++|+|+ ++
T Consensus 351 ~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g 430 (629)
T PRK10524 351 KHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTG 430 (629)
T ss_pred ccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCC
Confidence 345689999999999999999999988 89999999999999854333222 1235789999999999999998 55
Q ss_pred C-----Cccceehh---------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCC
Q psy2842 197 E-----GNGEICLK---------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYT 258 (486)
Q Consensus 197 ~-----~~gel~~~---------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~ 258 (486)
. +.|++.++ +|+++++++.+.+-...-..|+++||++..+.++++.++| +++.+|.. |+|
T Consensus 431 ~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~r--i~p 508 (629)
T PRK10524 431 EPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHR--LGT 508 (629)
T ss_pred CCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEE--eCH
Confidence 4 45777654 6788888776654321112389999999999999998888 77888887 788
Q ss_pred CCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 259 TNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 259 ~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.+.|..+..+..+.++.++..+++
T Consensus 509 ~eIE~~l~~~p~V~e~~vvg~~d~ 532 (629)
T PRK10524 509 REIEESISSHPAVAEVAVVGVKDA 532 (629)
T ss_pred HHHHHHHHhCCCcceEEEEccccC
Confidence 888888888888888877777665
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-16 Score=149.92 Aligned_cols=158 Identities=23% Similarity=0.305 Sum_probs=136.3
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCC---CcCcccccc-CCceEEEECCCC
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDF---KLDGVGRTI-PGTQTKIVDPDE 196 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~---~~~s~G~p~-p~~~~~i~d~~~ 196 (486)
+..+|+|||.+-.||+.+++++.++... +|+.+-+.|||.|- .+.++..+++ ...+.|+|+ |..|++|+|.+|
T Consensus 300 ~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEG--LvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg 377 (542)
T COG1021 300 ERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG--LVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADG 377 (542)
T ss_pred ccCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhh--hhcccccCCchHheeecCCCcCCCcceeEEecCCC
Confidence 4567899999999999999999999998 89999999999994 4445544443 468899998 688999999988
Q ss_pred C-----------CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCC
Q psy2842 197 E-----------GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNS 261 (486)
Q Consensus 197 ~-----------~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~ 261 (486)
+ .+|.+|++|||+.++.-+..|+.+| .+++||+...+.++++...| .|..||.. |-..+.
T Consensus 378 ~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~G---FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEK--IAAeEv 452 (542)
T COG1021 378 NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADG---FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEK--IAAEEV 452 (542)
T ss_pred CCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCC---ceecCceeEecCCceEEEEeeehhhhccccch--hhHHHH
Confidence 7 5788889999999999999999999 89999999999999998877 67789988 677788
Q ss_pred HHHHHHhhhhCCceEEEEcChhHHH
Q psy2842 262 PEACLHCLVTSDANICVVEDDKQLE 286 (486)
Q Consensus 262 ~~~l~~~~~~~~~~vvi~~~~~~~~ 286 (486)
|+.+..+..+.++.+|..+|+..++
T Consensus 453 En~LL~HP~V~~AAlVampDelLGE 477 (542)
T COG1021 453 ENLLLRHPAVHDAALVAMPDELLGE 477 (542)
T ss_pred HHHHhhCchhhhhhhhcCchhhcCc
Confidence 8888888999999999998875443
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-16 Score=163.88 Aligned_cols=149 Identities=19% Similarity=0.277 Sum_probs=117.3
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC-----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
+++++|.+++||+++++++.+.|.+ +|.+++++||+||++..++.+... ...++++|+|+++++++|+|+++.
T Consensus 310 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g 389 (537)
T PRK13382 310 SGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTG 389 (537)
T ss_pred CccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCC
Confidence 3478999999999999999999988 799999999999998766544322 335789999999999999998765
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
+.||+.++ +|+ ++.++. + .+| |.++||++..+.++++.+.| +++.+|.. |++.+.+..+..
T Consensus 390 ~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g---~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~--v~~~eIE~~l~~ 460 (537)
T PRK13382 390 EVGTIFVRNDTQFDGYT--SGSTKD-F-HDG---FMASGDVGYLDENGRLFVVGRDDEMIVSGGEN--VYPIEVEKTLAT 460 (537)
T ss_pred CeeEEEEEcCCcccCcc--ccchhh-c-cCC---CEeeCceEEEeCCCcEEEeccccceeEECCEE--ECHHHHHHHHHh
Confidence 45888764 676 333332 2 245 89999999999999988888 67788887 677778888777
Q ss_pred hhhhCCceEEEEcCh
Q psy2842 268 CLVTSDANICVVEDD 282 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~ 282 (486)
+..+.++.++..+++
T Consensus 461 ~~~V~~~~v~~~~~~ 475 (537)
T PRK13382 461 HPDVAEAAVIGVDDE 475 (537)
T ss_pred CCCEeeEEEEccCcc
Confidence 777777777766654
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-16 Score=167.43 Aligned_cols=147 Identities=16% Similarity=0.263 Sum_probs=118.3
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----C
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-----G 198 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-----~ 198 (486)
++++|.+++||+++++++.+++.+ + ++++++.||+||++..+........+.+++|+|+++++++|+|+++. +
T Consensus 259 ~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~ 338 (705)
T PRK06060 259 FRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGV 338 (705)
T ss_pred ccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCCC
Confidence 478999999999999999999988 6 58999999999998665544444456789999999999999998765 4
Q ss_pred ccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.||++++ ||+++++.+ +..+| |++|||++..+.++.+.++| .++.+|.. |++.+.+..+..+
T Consensus 339 ~GEl~i~g~~v~~GY~~~~~~~---~~~~~---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~~~eIE~~l~~~ 410 (705)
T PRK06060 339 EGDLWVRGPAIAKGYWNRPDSP---VANEG---WLDTRDRVCIDSDGWVTYRCRADDTEVIGGVN--VDPREVERLIIED 410 (705)
T ss_pred ceEEEEccchhhhhhhCCCccc---ccCCC---cEECCeeEEECCCceEEEecccCceEEECCEE--ECHHHHHHHHHhC
Confidence 6888876 699988754 22234 99999999999999988888 66778888 6788888877777
Q ss_pred hhhCCceEEEEc
Q psy2842 269 LVTSDANICVVE 280 (486)
Q Consensus 269 ~~~~~~~vvi~~ 280 (486)
..+.++.++.++
T Consensus 411 ~~V~~a~vv~~~ 422 (705)
T PRK06060 411 EAVAEAAVVAVR 422 (705)
T ss_pred CCeeEEEEEeec
Confidence 777666665443
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-16 Score=161.43 Aligned_cols=157 Identities=21% Similarity=0.321 Sum_probs=125.2
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCC-CC----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-EE---- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~-~~---- 197 (486)
.+++++|.+++||+++++++.+++.+ +++++++.||+||++.............+++|+|+|+++++|+|++ +.
T Consensus 302 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~ 381 (546)
T PRK08314 302 RDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPP 381 (546)
T ss_pred cCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCCC
Confidence 34578999999999999999999987 7999999999999987766655544567899999999999999854 22
Q ss_pred -Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
..||+.+ .+|+++++.+++.|....-..|.++||++..+.++.+.+.| +++.+|.. ++|.+.|..+.
T Consensus 382 g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~--v~~~eIE~~i~ 459 (546)
T PRK08314 382 GEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFK--VWPAEVENLLY 459 (546)
T ss_pred CCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEE--ECHHHHHHHHH
Confidence 4577766 48999998888887653224589999999999888888777 67788887 67777788777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++...++
T Consensus 460 ~~~~v~~~~v~~~~~~ 475 (546)
T PRK08314 460 KHPAIQEACVIATPDP 475 (546)
T ss_pred hCcchheEEEEeCCCc
Confidence 7776666666655543
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-15 Score=155.56 Aligned_cols=153 Identities=23% Similarity=0.299 Sum_probs=119.4
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC---CCCcCccccccCCceEEEECCCCC---
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD---DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~---~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
.+++++|.+++||++++.+..+.+.+.|+++++.||+||+++........ ..+.+++|+|+|+++++|+|+++.
T Consensus 249 ~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~ 328 (488)
T PRK09088 249 AALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCP 328 (488)
T ss_pred cccccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCc
Confidence 34578999999999999999888887899999999999998765433221 236789999999999999997654
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
..||+.++ +|+++++.+++.+..+| |.++||++..+.++++.+.| +++.+|.. ++|.+.|+.+
T Consensus 329 ~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g---~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~--i~~~~iE~~l 403 (488)
T PRK09088 329 AGVPGELLLRGPNLSPGYWRRPQATARAFTGDG---WFRTGDIARRDADGFFWVVDRKKDMFISGGEN--VYPAEIEAVL 403 (488)
T ss_pred CCCceEEEEECCccchhhcCChhhhhhhhcCCC---CeeecceEEEcCCCcEEEeccccceEEeCCEE--ECHHHHHHHH
Confidence 45888765 79999999988886666 99999999999999888887 55667766 5666666666
Q ss_pred HHhhhhCCceEEEEcC
Q psy2842 266 LHCLVTSDANICVVED 281 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~ 281 (486)
..+..+.++.++..++
T Consensus 404 ~~~~~v~~~~v~~~~~ 419 (488)
T PRK09088 404 ADHPGIRECAVVGMAD 419 (488)
T ss_pred HhCCCcceEEEEeCCC
Confidence 5555555555555544
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-16 Score=162.55 Aligned_cols=152 Identities=24% Similarity=0.333 Sum_probs=123.1
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCC--C---
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDE--E--- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~--~--- 197 (486)
+++++|.+++||+++++++.+++.+ ++.++++.||+||+++.++.+... ..+++++|+|+|+++++|+|+++ .
T Consensus 334 ~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~ 413 (573)
T PRK05605 334 DLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMP 413 (573)
T ss_pred CchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCC
Confidence 4578999999999999999999988 799999999999998777665443 33578999999999999999764 1
Q ss_pred --Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
..||+.+ .+|+++++.+++.|. .| |.++||++..+.++++.++| +++.+|.. ++|.+.+..+
T Consensus 414 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g---~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~--v~p~eIE~~l 487 (573)
T PRK05605 414 DGEEGELLVRGPQVFKGYWNRPEETAKSFL-DG---WFRTGDVVVMEEDGFIRIVDRIKELIITGGFN--VYPAEVEEVL 487 (573)
T ss_pred CCCeeEEEEecCchhhhhcCChhHhhhccc-CC---CcccCCEEEEcCCCcEEEEeccccceeeCCEE--ECHHHHHHHH
Confidence 4578776 489999988887773 45 89999999999999888877 66778887 6777777777
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+....++.++..+++
T Consensus 488 ~~~~~i~~~~v~~~~~~ 504 (573)
T PRK05605 488 REHPGVEDAAVVGLPRE 504 (573)
T ss_pred HhCcccceEEEEeeecc
Confidence 77777777766666543
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-15 Score=154.47 Aligned_cols=152 Identities=22% Similarity=0.286 Sum_probs=122.0
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC------
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE------ 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~------ 197 (486)
.++++|.+++||+++++++.++|.+ ++.++++.||+||++..++........++++|+|+++++++|+|+++.
T Consensus 239 ~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~ 318 (471)
T PRK07787 239 ALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDEDGGPVPHDG 318 (471)
T ss_pred cccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCCCCCCCCCC
Confidence 4578999999999999999999998 799999999999998765544444456789999999999999998753
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH-----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG-----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g-----~~~~gg~~vpi~~~~~~~~l 265 (486)
..||+.++ +|+++++.+++.+..+| |.++||++..+.++.+.+.| +++.+|.. ++|.+.++.+
T Consensus 319 ~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~---~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~--v~~~eIE~~l 393 (471)
T PRK07787 319 ETVGELQVRGPTLFDGYLNRPDATAAAFTADG---WFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYR--IGAGEIETAL 393 (471)
T ss_pred CCceEEEEECcccchhhcCChhhchhcccCCC---ceecCceEEEcCCCCEEEeCCCCceeEeeCCEE--ECHHHHHHHH
Confidence 25888764 89999999988886666 89999999999999888776 44677776 5777777777
Q ss_pred HHhhhhCCceEEEEcC
Q psy2842 266 LHCLVTSDANICVVED 281 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~ 281 (486)
..+....++.++..++
T Consensus 394 ~~~~~v~~~~v~~~~~ 409 (471)
T PRK07787 394 LGHPGVREAAVVGVPD 409 (471)
T ss_pred HhCCCcceEEEEcccc
Confidence 7666666665555544
|
|
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-15 Score=154.71 Aligned_cols=158 Identities=23% Similarity=0.358 Sum_probs=134.7
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CCC-ceeccccccccccccccCCCCC--CCcCccccccCCceEEEECCCCC
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LDI-PICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEE 197 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~-~i~~~yG~TE~~~~~~~~~~~~--~~~~s~G~p~p~~~~~i~d~~~~ 197 (486)
..+.+++||++.+.|+|+.++..+++.+ +|. +|++.||+||+++.++...+.. .++|+.|.|.+|+.+.|.|++|.
T Consensus 354 ~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~ 433 (626)
T KOG1175|consen 354 TSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGN 433 (626)
T ss_pred cccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCC
Confidence 3344478999999999999999999998 777 6999999999999988877766 78999999999999999999765
Q ss_pred ------Cccceeh---------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCC
Q psy2842 198 ------GNGEICL---------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYT 258 (486)
Q Consensus 198 ------~~gel~~---------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~ 258 (486)
+.|++.+ +.||++.++......+ .+...+.+||.+..|.++++.++| ++..+|.. +++
T Consensus 434 ~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~-k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhR--igt 510 (626)
T KOG1175|consen 434 ELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFK-KFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHR--IGT 510 (626)
T ss_pred CcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcc-cCCceEEecCceEEcCCceEEEEeccccccccccee--ecH
Confidence 4556654 4899999955444322 233478999999999999999998 88899998 899
Q ss_pred CCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 259 TNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 259 ~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.+.|+.+..+..++++.+|..+++
T Consensus 511 aEIE~al~~hp~VaEsAvVg~p~~ 534 (626)
T KOG1175|consen 511 AEIESALVEHPAVAESAVVGSPDP 534 (626)
T ss_pred HHHHHHHhhCcchhheeeecCCCC
Confidence 999999999999999999999987
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-15 Score=159.87 Aligned_cols=152 Identities=26% Similarity=0.365 Sum_probs=119.4
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC--------CCCcCccccccCCceEEEECC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD--------DFKLDGVGRTIPGTQTKIVDP 194 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~--------~~~~~s~G~p~p~~~~~i~d~ 194 (486)
.+++++|.+++||+++++++.+++.+ +|.++++.||+||+++.++..... ....+++|+|+++++++++|+
T Consensus 277 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~ 356 (528)
T PRK07470 277 YDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDD 356 (528)
T ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECC
Confidence 34589999999999999999998877 899999999999998776654321 225689999999999999998
Q ss_pred CCC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 195 DEE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 195 ~~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
++. +.||+.++ +|+++++.++..+ .+| |.++||++..+.++++.+.| +++.+|.. ++|.
T Consensus 357 ~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~---~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~--v~~~ 430 (528)
T PRK07470 357 EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDG---WFRTGDLGHLDARGFLYITGRASDMYISGGSN--VYPR 430 (528)
T ss_pred CCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCC---cEecceeEEEccCCeEEEeCCccceEEeCCEE--ECHH
Confidence 765 46888764 8999999888877 355 89999999999999888887 55677777 5677
Q ss_pred CCHHHHHHhhhhCCceEEEEcC
Q psy2842 260 NSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
+.|..+..+....++.++..++
T Consensus 431 ~IE~~l~~~~~v~~~~v~~~~~ 452 (528)
T PRK07470 431 EIEEKLLTHPAVSEVAVLGVPD 452 (528)
T ss_pred HHHHHHHhCCCceEEEEEeccC
Confidence 7777666665555555555444
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-15 Score=156.66 Aligned_cols=152 Identities=20% Similarity=0.301 Sum_probs=120.4
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCC--
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
.+++++|.+++||+++++++.+++.+ + +.+++++||+||+++.++..... ....+++|+|+|+++++++|+++.
T Consensus 261 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~ 340 (497)
T PRK06145 261 FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWL 340 (497)
T ss_pred cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCC
Confidence 34578999999999999999999987 6 68899999999998765544322 235689999999999999997654
Q ss_pred ---Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 ---GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ---~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
..||++++ ||+++++.+++.|. +| |.++||++..+.++++.++| +++.+|.. +++...|..
T Consensus 341 ~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~-~~---~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~--v~~~~IE~~ 414 (497)
T PRK06145 341 PPNMKGEICMRGPKVTKGYWKDPEKTAEAFY-GD---WFRSGDVGYLDEEGFLYLTDRKKDMIISGGEN--IASSEVERV 414 (497)
T ss_pred CCCCceEEEEECcchhhhhcCChHHHHHHHh-CC---CeeccceEEEcCCCcEEEeccccceEEeCCeE--ECHHHHHHH
Confidence 46787764 79999999998884 45 99999999999999988888 66778887 566666777
Q ss_pred HHHhhhhCCceEEEEcC
Q psy2842 265 CLHCLVTSDANICVVED 281 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~ 281 (486)
+..+....++.++..++
T Consensus 415 l~~~~~v~~~~v~~~~~ 431 (497)
T PRK06145 415 IYELPEVAEAAVIGVHD 431 (497)
T ss_pred HHhCCCeeEEEEEecCC
Confidence 76666665655555544
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-15 Score=158.27 Aligned_cols=152 Identities=26% Similarity=0.362 Sum_probs=119.6
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCC-ceeccccccccccccccCCCCCC---CcCccccccCCceEEEECCCCC--
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDI-PICEVFGMSECAGAHTVSAPDDF---KLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~-~i~~~yG~TE~~~~~~~~~~~~~---~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
+++++|.+++||+++++++.+++++ ++. ++++.||+||+++..+.+..... .++++|+|+++++++|+|+++.
T Consensus 279 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~ 358 (513)
T PRK07656 279 DLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEV 358 (513)
T ss_pred CccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCC
Confidence 4589999999999999999999987 888 89999999999888776654432 2689999999999999997764
Q ss_pred ---Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 ---GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ---~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
..||+.++ +|++++..++..+..+| |.++||++..+.++.+.++| .++.+|.. +++...|+.
T Consensus 359 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~---~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~--v~~~~iE~~ 433 (513)
T PRK07656 359 PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADG---WLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFN--VYPAEVEEV 433 (513)
T ss_pred CCCCceEEEEEcchhhhhhcCCHHHHhhhhccCC---ceeccceEEEcCCeeEEEEecccceEEeCCEE--eCHHHHHHH
Confidence 46887764 89999888888875566 89999999998888887777 55666766 566666666
Q ss_pred HHHhhhhCCceEEEEcC
Q psy2842 265 CLHCLVTSDANICVVED 281 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~ 281 (486)
+..+....++.++...+
T Consensus 434 l~~~~~i~~~~v~~~~~ 450 (513)
T PRK07656 434 LYEHPAVAEAAVIGVPD 450 (513)
T ss_pred HHhCCCeeEEEEEecCC
Confidence 66655555555554443
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-15 Score=157.45 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=123.3
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCC-CCCCCcCcccccc-CCceEEEECCCCC---
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSA-PDDFKLDGVGRTI-PGTQTKIVDPDEE--- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~-~~~~~~~s~G~p~-p~~~~~i~d~~~~--- 197 (486)
.+++++|.+++||+++++++.+++.+ +|.+++++||+||++...+... ......+++|+|+ ++.+++++|+++.
T Consensus 296 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~ 375 (527)
T TIGR02275 296 YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVA 375 (527)
T ss_pred CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCC
Confidence 44589999999999999999999988 8999999999999654332211 1223567899999 4899999998765
Q ss_pred --Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.|++++ .+|+++++.++..+.++| |.++||++..+.++.+.++| .++.+|.. ++|.+.++.+
T Consensus 376 ~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg---~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~--v~~~eiE~~l 450 (527)
T TIGR02275 376 PGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEG---FYYTGDLVRLTPEGYIVVVGRAKDQINRGGEK--IAAEEIENLL 450 (527)
T ss_pred CCCceEEEecCCccchhhcCChhHhHhhcCcCC---CEEcCceEEEcCCccEEEEecccceeecCCEE--ECHHHHHHHH
Confidence 4577766 489999999998887777 89999999999888888877 56677777 6788888888
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+....++.++..+++
T Consensus 451 ~~~~~v~~~~v~~~~~~ 467 (527)
T TIGR02275 451 LAHPAVHDAALVSMPDE 467 (527)
T ss_pred HhCCCceEEEEEecCCc
Confidence 87777777777777654
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-15 Score=159.26 Aligned_cols=155 Identities=21% Similarity=0.324 Sum_probs=125.2
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC---
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
..+++++|.+++||+++++.+.+.|.+ +|+++++.||+||++..++..... ...++++|+|+++++++++|+++.
T Consensus 323 ~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~ 402 (557)
T PRK07059 323 KLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLP 402 (557)
T ss_pred cCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCC
Confidence 345689999999999999999999888 799999999999998776654432 235689999999999999998764
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.||+.++ +|+++++.++..|..+| |.++||++..+.++++.++| .++.+|.. ++|.+.++.+
T Consensus 403 ~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g---~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~--i~p~~iE~~l 477 (557)
T PRK07059 403 LGEPGEICIRGPQVMAGYWNRPDETAKVMTADG---FFRTGDVGVMDERGYTKIVDRKKDMILVSGFN--VYPNEIEEVV 477 (557)
T ss_pred CCCceEEEEeCCccchhhhcCHHHHhhhcccCC---ceecCcEEEEcCCCcEEEecccccceEECCEE--EcHHHHHHHH
Confidence 45787764 89999999888886667 89999999999998888887 66778876 6777777777
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+..+.++.++..+++
T Consensus 478 ~~~~~V~~~~v~~~~~~ 494 (557)
T PRK07059 478 ASHPGVLEVAAVGVPDE 494 (557)
T ss_pred HhCCceeEEEEEecccC
Confidence 77776666666655443
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-15 Score=160.70 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=120.0
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCC---
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
..++++|.+++||+++++++.+++++ +++++++.||+||++...+..... ....+++|+|+|+++++|+|+++.
T Consensus 309 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~ 388 (547)
T PRK13295 309 RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLP 388 (547)
T ss_pred CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCC
Confidence 45689999999999999999999987 899999999999998765544322 224578999999999999998764
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.|+++++ +|+++++.++.. .+| |.++||++..+.++.+.+.| +++.+|.. ++|...++.+
T Consensus 389 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g---~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~--v~p~~IE~~l 461 (547)
T PRK13295 389 AGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADG---WFDTGDLARIDADGYIRISGRSKDVIIRGGEN--IPVVEIEALL 461 (547)
T ss_pred CCCCCeEEEEcCcccccccCCccccccC--CCC---CeecceEEEEcCCceEEEEeccCCeEEECCEE--ECHHHHHHHH
Confidence 46787764 899988877654 345 99999999999999888887 56678887 5777777777
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+....++.++..+++
T Consensus 462 ~~~~~v~~~~v~~~~~~ 478 (547)
T PRK13295 462 YRHPAIAQVAIVAYPDE 478 (547)
T ss_pred HhCCCeeeEEEEeeecC
Confidence 77666667766666544
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-15 Score=159.30 Aligned_cols=155 Identities=18% Similarity=0.272 Sum_probs=126.7
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC---
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
..+++++|.+++||+++++++.+.|++ +|+++++.||+||+++.++.+... ....+++|+|+++++++++|+++.
T Consensus 325 ~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~ 404 (560)
T PRK08751 325 QIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLA 404 (560)
T ss_pred CcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCC
Confidence 345689999999999999999999998 799999999999998776654432 234688999999999999997764
Q ss_pred --Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
..||+.+ .+|+++++.+++.+..+| |.++||++..+.++++.+.| .++.+|.. ++|.+.|..+
T Consensus 405 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g---~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~--v~p~eiE~~l 479 (560)
T PRK08751 405 IGEIGELCIKGPQVMKGYWKRPEETAKVMDADG---WLHTGDIARMDEQGFVYIVDRKKDMILVSGFN--VYPNEIEDVI 479 (560)
T ss_pred CCCceEEEEecCccchhhcCChhhhhhccccCC---CccccceEEEcCCceEEEEeechhheeECCEE--EcHHHHHHHH
Confidence 4678776 489999999888886566 99999999999999888877 67788887 6888888888
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+..+.++.++..+++
T Consensus 480 ~~~~~v~~~~v~~~~~~ 496 (560)
T PRK08751 480 AMMPGVLEVAAVGVPDE 496 (560)
T ss_pred HhCcCeeeeEEEecCCC
Confidence 77777777776666543
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-15 Score=157.45 Aligned_cols=155 Identities=21% Similarity=0.298 Sum_probs=123.1
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
.+++++|.+++||+++++++.+.+++ +|.++++.||+||+++++...... ....+++|+|+++ +++|+|+++.
T Consensus 267 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~ 345 (501)
T PRK13390 267 YDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPA 345 (501)
T ss_pred CChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCC
Confidence 34578999999999999999999988 799999999999998755443322 2356899999999 7999998765
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||+.++ +|+++++.+++.+...+ ..|.++||++..+.++.+.+.| +++.+|.. ++|.+.++.+.
T Consensus 346 g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~-~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~--v~p~eIE~~l~ 422 (501)
T PRK13390 346 GRIGTVYFERDRLPFRYLNDPEKTAAAQHPAH-PFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVN--IYPQETENALT 422 (501)
T ss_pred CCceEEEEecCCccccccCChhhhHHhhccCC-CceEEcCceEEECCCCeEEEeeccccceeECCee--eCHHHHHHHHH
Confidence 56787664 89999999988875321 2388999999999999988887 67778877 67777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 423 ~~~~v~~~~v~~~~~~ 438 (501)
T PRK13390 423 MHPAVHDVAVIGVPDP 438 (501)
T ss_pred hCCCeeEEEEEeccCc
Confidence 7777777777776654
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-15 Score=158.07 Aligned_cols=154 Identities=25% Similarity=0.358 Sum_probs=121.1
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCC-----CCCCcCccccccCCceEEEECCC-
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAP-----DDFKLDGVGRTIPGTQTKIVDPD- 195 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~-----~~~~~~s~G~p~p~~~~~i~d~~- 195 (486)
.+++++|.+++||+++++++.+++++ + +..+++.||+||++..++.... ...+++++|+|+++++++|+|++
T Consensus 295 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~ 374 (537)
T PLN02246 295 YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPET 374 (537)
T ss_pred cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCC
Confidence 34578999999999999999999998 6 7889999999999866543321 12356899999999999999853
Q ss_pred CC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 196 EE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 196 ~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
+. +.||+.++ ||+++++.++..+..+| |.++||++..+.++.+.++| +++.+|.. |++.+
T Consensus 375 ~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~---~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~--i~~~e 449 (537)
T PLN02246 375 GASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDG---WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQ--VAPAE 449 (537)
T ss_pred CCcCCCCCceEEEEECCchhccccCCchhhhhcccCCC---CeeecceEEEeCCCeEEEEecccceEEECCEE--ECcHH
Confidence 32 45787765 89999999888876556 99999999999998888877 66778877 67777
Q ss_pred CHHHHHHhhhhCCceEEEEcCh
Q psy2842 261 SPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.|+.+..+..+.++.++..+++
T Consensus 450 IE~~l~~~~~v~~~~v~~~~~~ 471 (537)
T PLN02246 450 LEALLISHPSIADAAVVPMKDE 471 (537)
T ss_pred HHHHHHhCCCeeEEEEEcccCc
Confidence 7777777766666666554443
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=147.82 Aligned_cols=194 Identities=18% Similarity=0.227 Sum_probs=149.5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...++|+++...+++++..+.+.|+.++..|+++...+.+.++.++|++++|+.++|+++..+.+++..+++.+.+.+++
T Consensus 250 ~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~ 329 (642)
T COG1020 250 GQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLL 329 (642)
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEE
Confidence 47899999999999999999999999999999999889897789999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+...... .....+. +..+.... ......+. .....+++.+|++|||||||.|||
T Consensus 330 ~~~~~~~-----~~~~~~~----~~~~~~~~-----------~~~~~~~~------~~~~~~~~~ayiiytsgstg~Pkg 383 (642)
T COG1020 330 TQAHLRV-----DDVGLPG----LALDDALS-----------EIPDTDPI------PQALLGDALAYIIYTSGSTGQPKG 383 (642)
T ss_pred ecccccc-----ccccCCc----cccccccc-----------cCCccCcc------cccCCCCCeEEEEEccCCCCCCCC
Confidence 8733100 0001110 10000000 00000000 112345889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChH
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL 420 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~ 420 (486)
|+++|+++..........+.. ...|+++...++ .+......++.++..|+++++......
T Consensus 384 v~~~h~~~~~~~~~~~~~~~~-~~~d~~l~~~s~-~fD~~~~~~f~~l~~G~~l~~~~~~~~ 443 (642)
T COG1020 384 VRIEHRALANLLNDAGARFGL-DADDRVLALASL-SFDASVFEIFGALLEGARLVLAPALLQ 443 (642)
T ss_pred ceecCHHHHHHHHHHHHhcCC-CcccEEeecCCc-ccchhHHHHHHHHhCCCEEEecCcccc
Confidence 999999999977777777777 677888888887 556667899999999999999887443
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-15 Score=155.40 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=120.8
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCC--CCcCccccccCCceEEEECCCCC--
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~--~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
.+++++|.+++||++++.++.+++++ + ++++++.||+||++++.+...+.. ...+++|+|+++++++|+|+++.
T Consensus 283 ~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~ 362 (523)
T PRK08316 283 RDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDV 362 (523)
T ss_pred CCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCC
Confidence 34588999999999999999999998 6 899999999999988766554432 35689999999999999997764
Q ss_pred ---Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 ---GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ---~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
..||+.+ .+|+++++.+++.+ .+| |+++||++..+.++.+.+.| +++.+|.. ++|...++.
T Consensus 363 ~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~---~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~--i~~~~iE~~ 436 (523)
T PRK08316 363 APGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGG---WFHSGDLGVMDEEGYITVVDRKKDMIKTGGEN--VASREVEEA 436 (523)
T ss_pred CCCCcceEEEECCchhhhhcCCHHHHHHHh-hCC---CeeccceEEEcCCceEEEecccccEEEeCCeE--ECHHHHHHH
Confidence 4678776 48999998888887 445 89999999999999888887 55667776 566666666
Q ss_pred HHHhhhhCCceEEEEcCh
Q psy2842 265 CLHCLVTSDANICVVEDD 282 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~ 282 (486)
+..+....++.++..+++
T Consensus 437 l~~~~~v~~~~v~~~~~~ 454 (523)
T PRK08316 437 LYTHPAVAEVAVIGLPDP 454 (523)
T ss_pred HHhCCChheEeEecccCc
Confidence 666665656555555443
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-15 Score=156.43 Aligned_cols=150 Identities=22% Similarity=0.359 Sum_probs=119.1
Q ss_pred ceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCC-CC----CCCcCccccccCCceEEEECCCCC---
Q psy2842 128 RCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSA-PD----DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 128 ~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~-~~----~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
++|.+++||+++++++.+++++ + |+++++.||+||+++...... +. ..+.+++|+|+|+++++|+|+++.
T Consensus 304 ~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~ 383 (546)
T PLN02330 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL 383 (546)
T ss_pred eeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC
Confidence 5799999999999999999998 7 899999999999875543221 11 124578999999999999985422
Q ss_pred ---Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 ---GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ---~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
+.||+.++ +|+++++.++..+..+| |.++||++..+.++.+.++| .++.+|.. ++|.+.+..
T Consensus 384 p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g---~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~--v~~~~iE~~ 458 (546)
T PLN02330 384 PKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDG---WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQ--VAPAELEAI 458 (546)
T ss_pred CCCCceEEEEecchhhhhhccCccchhhhccCCC---ceecccEEEEeCCCcEEEEechHHhhhcCCEE--ECHHHHHHH
Confidence 46888664 79999998888876666 89999999999888888877 77788887 677777777
Q ss_pred HHHhhhhCCceEEEEcCh
Q psy2842 265 CLHCLVTSDANICVVEDD 282 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~ 282 (486)
+..+..+.++.++.++++
T Consensus 459 l~~~~~v~~~~v~~~~~~ 476 (546)
T PLN02330 459 LLTHPSVEDAAVVPLPDE 476 (546)
T ss_pred HHhCCchheEEEEecccc
Confidence 777777777777666554
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-15 Score=154.72 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=124.0
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCC--CCcCccccccCCceEEEECCCCC---
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~--~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
..+++++|.+++||+++++++.+++.+.|+++++.||+||+++......... ...+++|+|+++++++++|+++.
T Consensus 298 ~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 377 (547)
T PRK06087 298 PADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLP 377 (547)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCc
Confidence 3456899999999999999999998889999999999999987665443321 24568999999999999997664
Q ss_pred --Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
..||+++ .+|+++++.+...+..+| |+++||++..+.++.+.++| .++.+|.. ++|...++.+
T Consensus 378 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g---~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~--v~p~~iE~~l 452 (547)
T PRK06087 378 PGCEGEEASRGPNVFMGYLDEPELTARALDEEG---WYYSGDLCRMDEAGYIKITGRKKDIIVRGGEN--ISSREVEDIL 452 (547)
T ss_pred CCCcceEEEecccccccccCCHHHHHHHhCCCC---CcCcCceEEECCCCCEEEEecchhhhhcCCEE--ECHHHHHHHH
Confidence 4577765 589999999988886666 89999999999988887777 66678877 5777777777
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+..+.++.++..+++
T Consensus 453 ~~~~~v~~~~v~~~~~~ 469 (547)
T PRK06087 453 LQHPKIHDACVVAMPDE 469 (547)
T ss_pred HhCCCeeEEEEEecCCC
Confidence 77666667666666544
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-15 Score=155.19 Aligned_cols=152 Identities=21% Similarity=0.326 Sum_probs=117.8
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC------CCCcCccccccCCceEEEECCCC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD------DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~------~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
.+++++|.+++||+++++++.+.+.+ +|..+.+.||+||++..++..... ....+++|+|+|+++++|+|+++
T Consensus 278 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~ 357 (524)
T PRK06188 278 RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDG 357 (524)
T ss_pred CCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCC
Confidence 35689999999999999998887776 899999999999997666544332 12567899999999999999876
Q ss_pred C-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCC
Q psy2842 197 E-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNS 261 (486)
Q Consensus 197 ~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~ 261 (486)
. +.|++.++ +|++++..++..+ .+| |.++||++..+.++++.+.| .++.+|.. ++|...
T Consensus 358 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g---~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~--i~~~~I 431 (524)
T PRK06188 358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDG---WLHTGDVAREDEDGFYYIVDRKKDMIVTGGFN--VFPREV 431 (524)
T ss_pred CCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCC---ceeecceEEEcCCccEEEEeccccceecCCEE--ECHHHH
Confidence 4 45777764 8999988888777 456 89999999999998888777 55677776 566666
Q ss_pred HHHHHHhhhhCCceEEEEcC
Q psy2842 262 PEACLHCLVTSDANICVVED 281 (486)
Q Consensus 262 ~~~l~~~~~~~~~~vvi~~~ 281 (486)
+..+..+....++.++..++
T Consensus 432 E~~l~~~~~v~~~~v~~~~~ 451 (524)
T PRK06188 432 EDVLAEHPAVAQVAVIGVPD 451 (524)
T ss_pred HHHHHhCCCeeEEEEEeccC
Confidence 66666666665655555443
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-15 Score=156.52 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=123.5
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC---
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
.++++++|.+++||+++++++.+++++ +|..++++||+||+++.+...... ...++++|+|+++ +++++|+++.
T Consensus 271 ~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~ 349 (511)
T PRK13391 271 KYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELP 349 (511)
T ss_pred cCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCC
Confidence 345689999999999999999999998 799999999999998765543322 2356899999999 6999997765
Q ss_pred --Cccceehh-----hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 --GNGEICLK-----EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 --~~gel~~~-----~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
..||++++ +|+++++.++..+..+ ..|.++||++..+.++.+.+.| .++.+|.. +++.+.++.+.
T Consensus 350 ~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~~--~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~--v~~~eie~~l~ 425 (511)
T PRK13391 350 PGEPGTIWFEGGRPFEYLNDPAKTAEARHPD--GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVN--IYPQEAENLLI 425 (511)
T ss_pred CCCceEEEEecCcceEEcCChhHhHHhhccC--CCEEecCCEEEECCCccEEEeccCCCEEEeCCEE--ECHHHHHHHHH
Confidence 45888776 6999999888877544 2499999999999999988887 66678877 67777778777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+....++.++..++.
T Consensus 426 ~~~~v~~~~v~~~~~~ 441 (511)
T PRK13391 426 THPKVADAAVFGVPNE 441 (511)
T ss_pred hCCCcceEEEEecCCc
Confidence 7777777766666544
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-15 Score=156.23 Aligned_cols=153 Identities=22% Similarity=0.280 Sum_probs=120.9
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCC-CCCCCcCcccccc-CCceEEEECCCCC----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSA-PDDFKLDGVGRTI-PGTQTKIVDPDEE---- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~-~~~~~~~s~G~p~-p~~~~~i~d~~~~---- 197 (486)
.++++|.+++||+++++++.+++.+ +|+++++.||+||+....+... +.....+++|+|+ |+++++|+|+++.
T Consensus 298 ~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~ 377 (536)
T PRK10946 298 QLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQ 377 (536)
T ss_pred cccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCC
Confidence 4478999999999999999999987 8999999999999654332211 1223568999999 8999999997765
Q ss_pred -Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.|++.+ .||+++++.+++.|..+| |.++||++..+.++++.+.| .++.+|.. ++|.+.+..+.
T Consensus 378 g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~---~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~--v~~~eiE~~l~ 452 (536)
T PRK10946 378 GEVGRLMTRGPYTFRGYYKSPQHNASAFDANG---FYCSGDLVSIDPDGYITVVGREKDQINRGGEK--IAAEEIENLLL 452 (536)
T ss_pred CCccEEEEecCccchhhcCCcccchhhcccCC---ceecCceEEECCCCcEEEeccccceeecCCEE--EcHHHHHHHHH
Confidence 4567765 489999999999887777 89999999999999988887 66778887 57777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+....++.++..+++
T Consensus 453 ~~~~v~~~~v~~~~~~ 468 (536)
T PRK10946 453 RHPAVIHAALVSMEDE 468 (536)
T ss_pred hCCCcceEEEEcCCCc
Confidence 7766666666655543
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-15 Score=154.53 Aligned_cols=154 Identities=22% Similarity=0.328 Sum_probs=119.1
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC--
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
+.++++++|.+++||++++.++.+++.+ +|..+++.||+||+++.+..+... ....+++|+|+ +++++++|+++.
T Consensus 257 ~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~ 335 (502)
T PRK08276 257 ARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILDEDGNEL 335 (502)
T ss_pred CCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEECCCCCCC
Confidence 3456789999999999999999999998 799999999999998755554432 23568999999 889999997654
Q ss_pred ---Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 ---GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ---~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
+.||+.++ +|+++++.++..+..+| |.++||++..+.++.+.+.| .++.+|.. +++.+.+..
T Consensus 336 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~---~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~--v~~~~iE~~ 410 (502)
T PRK08276 336 PPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHG---WVTVGDVGYLDEDGYLYLTDRKSDMIISGGVN--IYPQEIENL 410 (502)
T ss_pred cCCCceEEEEECCCccchhcCCHHHHHHHhcCCC---ceeecceEEEcCCcCEEEeccCcceEEeCCEE--eCHHHHHHH
Confidence 45777765 89999999988886656 99999999999888888777 55667766 566666666
Q ss_pred HHHhhhhCCceEEEEcC
Q psy2842 265 CLHCLVTSDANICVVED 281 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~ 281 (486)
+..+....++.++...+
T Consensus 411 i~~~~~v~~~~v~~~~~ 427 (502)
T PRK08276 411 LVTHPKVADVAVFGVPD 427 (502)
T ss_pred HHhCCCcceEEEEeCCC
Confidence 65555555555554433
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-15 Score=155.24 Aligned_cols=153 Identities=20% Similarity=0.304 Sum_probs=118.7
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC---
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
.++++++|.+++||+++++++.+++.+ ++..++++||+||++..++.+... ..+++++|+|+|+++++++|+++.
T Consensus 267 ~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 346 (509)
T PRK12406 267 KYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLP 346 (509)
T ss_pred cCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCC
Confidence 355689999999999999999999998 799999999999998765544322 236789999999999999998764
Q ss_pred --Cccceehh-------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 --GNGEICLK-------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 --~~gel~~~-------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
..||+..+ +|+++++.++..+ .+| |.++||++..+.++.+.+.| .++.+|.. ++|.+.+..
T Consensus 347 ~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~---~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~--v~~~~IE~~ 420 (509)
T PRK12406 347 QGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGG---FITSGDVGYLDADGYLFLCDRKRDMVISGGVN--IYPAEIEAV 420 (509)
T ss_pred CCCceEEEEECCccccccccCCchhccccc-CCC---CeEEccEEEEcCCceEEEeecccceEEECCEE--ECHHHHHHH
Confidence 45777653 6887777766554 445 99999999999998888877 55677777 577777777
Q ss_pred HHHhhhhCCceEEEEcC
Q psy2842 265 CLHCLVTSDANICVVED 281 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~ 281 (486)
+..+....++.++..++
T Consensus 421 l~~~~~v~~~~v~~~~~ 437 (509)
T PRK12406 421 LHAVPGVHDCAVFGIPD 437 (509)
T ss_pred HHhCCCeeEEEEEeeec
Confidence 76666666665555543
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-15 Score=157.00 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=117.8
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCC--CCcCccccccCCceEEEECCCCC----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~--~~~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
.++++|.+++||+++++++.+++.+ +|+++++.||+||+++..+...... ....++|+|+|+++++|+|+++.
T Consensus 308 ~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~ 387 (538)
T TIGR03208 308 PVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQ 387 (538)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcC
Confidence 4578999999999999999999887 8999999999999987665444322 22468999999999999998764
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||++++ +|+++++.++ ...+| |.++||++..+.++.+.++| +++.+|.. ++|.+.|..+.
T Consensus 388 g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~---~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~--v~p~eIE~~l~ 460 (538)
T TIGR03208 388 GETGRLLVRGCSNFGGYLKRPHLNS--TDAEG---WFDTGDLAFQDAEGYIRINGRSKDVIIRGGEN--IPVVEIENLLY 460 (538)
T ss_pred CCCcEEEEecCcccccccCCccccc--ccCCC---ceeccceEEECCCCcEEEEeccCceEEECCEE--ECHHHHHHHHh
Confidence 45888764 7888877653 22344 99999999999999888887 66788887 57777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 461 ~~~~v~~~~v~~~~~~ 476 (538)
T TIGR03208 461 QHPAVAQVAIVAYPDE 476 (538)
T ss_pred cCcceeeEEEEeccCC
Confidence 7666666666665543
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-15 Score=153.66 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=117.3
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC-----C
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE-----G 198 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~-----~ 198 (486)
.+.+.+++||+++++++.+++++ + ++.+++.||+||++..+...... ..+.+++|+|+|+++++|+|+++. +
T Consensus 253 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 332 (487)
T PRK07638 253 ENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGE 332 (487)
T ss_pred CceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCC
Confidence 34555778999999999999998 6 78999999999998776554432 336789999999999999998765 5
Q ss_pred ccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.||+.++ +|+++++.+.+.. .+| |.++||++..+.++++.++| .++.+|.. ++|.+.|..+..+
T Consensus 333 ~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g---~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~--v~~~eiE~~l~~~ 406 (487)
T PRK07638 333 IGTVYVKSPQFFMGYIIGGVLARELN-ADG---WMTVRDVGYEDEEGFIYIVGREKNMILFGGIN--IFPEEIESVLHEH 406 (487)
T ss_pred CeEEEEecccceeeecCCHHHHhhhc-cCC---cEecCccEeEcCCCeEEEEecCCCeEEeCCEE--ECHHHHHHHHHhC
Confidence 6888764 8999888766544 455 89999999999999888887 66778876 6777777777777
Q ss_pred hhhCCceEEEEcCh
Q psy2842 269 LVTSDANICVVEDD 282 (486)
Q Consensus 269 ~~~~~~~vvi~~~~ 282 (486)
..+.++.++...++
T Consensus 407 ~~v~~~~v~~~~~~ 420 (487)
T PRK07638 407 PAVDEIVVIGVPDS 420 (487)
T ss_pred CCeeeEEEEecCch
Confidence 66666666655443
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-15 Score=155.91 Aligned_cols=150 Identities=23% Similarity=0.250 Sum_probs=116.8
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC--------CCCcCccccccCCceEEEECCCC
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD--------DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~--------~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
++++|.+.+||+++++++.+++.+ +|.+++++||+||++..++..... ....|.+|+ .++++++++|+++
T Consensus 294 ~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g 372 (534)
T PRK05852 294 PAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDG 372 (534)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCC
Confidence 478999999999999999999998 899999999999998766543321 112344554 6999999999877
Q ss_pred C-----Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCC
Q psy2842 197 E-----GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNS 261 (486)
Q Consensus 197 ~-----~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~ 261 (486)
. +.||+.+ ++|+++++.+++.|. +| |.++||++..+.++++.+.| .++.+|.. ++|.+.
T Consensus 373 ~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~-~g---~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~--v~~~~i 446 (534)
T PRK05852 373 LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFT-DG---WLRTGDLGSLSAAGDLSIRGRIKELINRGGEK--ISPERV 446 (534)
T ss_pred CCCCCCCceEEEEecCcccchhcCCcccchhhhc-CC---CcccCceEEEeCCCcEEEEecchhhEEECCEE--ECHHHH
Confidence 5 4577776 489999999988873 56 89999999999998888777 66777876 577766
Q ss_pred HHHHHHhhhhCCceEEEEcCh
Q psy2842 262 PEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 262 ~~~l~~~~~~~~~~vvi~~~~ 282 (486)
++.+..+..+.++.++..+++
T Consensus 447 E~~l~~~~~V~~~~v~g~~~~ 467 (534)
T PRK05852 447 EGVLASHPNVMEAAVFGVPDQ 467 (534)
T ss_pred HHHHHhCCCeeeEEEEecCCc
Confidence 776666666666666665543
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.4e-15 Score=152.67 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=119.0
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC-----
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
+.++|.+++||+++++++.+++++ + +..+++.||+||++......... ..+++++|+|+|+++++|+|+++.
T Consensus 273 ~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~ 352 (515)
T TIGR03098 273 APSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPG 352 (515)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCC
Confidence 478999999999999999999998 6 78999999999987654433221 346789999999999999997754
Q ss_pred Cccceeh------hhhHhhHHHHHHHHHHcCC--------cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 198 GNGEICL------KEYEANVRTVAKAFLKLGL--------ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 198 ~~gel~~------~~y~~~~~~~a~~l~~~g~--------~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
+.|++.. .+|+++++.+++.|...+. ..|.++||++..+.++.+.+.| +++.+|.. ++|.
T Consensus 353 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~--v~~~ 430 (515)
T TIGR03098 353 EEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYR--VSPT 430 (515)
T ss_pred CceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEE--eCHH
Confidence 4577765 4899999888887754321 1257899999999998888877 66677877 5777
Q ss_pred CCHHHHHHhhhhCCceEEEEcCh
Q psy2842 260 NSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.|+.+..+....++.++..+++
T Consensus 431 eiE~~l~~~~~v~~~~v~~~~~~ 453 (515)
T TIGR03098 431 EVEEVAYATGLVAEAVAFGVPDP 453 (515)
T ss_pred HHHHHHhcCCCeeEEEEEeccCc
Confidence 77777766666666666655543
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-15 Score=154.20 Aligned_cols=149 Identities=21% Similarity=0.274 Sum_probs=114.6
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC-----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
.++++|.+++||+++++++.++|.+ +|.++++.||+||++......... ....+++|+|+|+++++|+|+++.
T Consensus 290 ~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g 369 (516)
T PRK13383 290 PLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPR 369 (516)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCC
Confidence 4578999999999999999999988 899999999999998655443322 235689999999999999997765
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
+.||+.++ +|++... ..+ .+| |.++||++..+.++.+.+.| +++.+|.. ++|.+.+..+..
T Consensus 370 ~~Gel~v~g~~~~~~Y~~~~~---~~~-~~g---~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~--v~~~eiE~~l~~ 440 (516)
T PRK13383 370 VTGRIFVGGELAGTRYTDGGG---KAV-VDG---MTSTGDMGYLDNAGRLFIVGREDDMIISGGEN--VYPRAVENALAA 440 (516)
T ss_pred CceEEEEecCcccccccCCch---hhe-ecC---ceecceeEEEcCCccEEEeccccceEEECCEE--ECHHHHHHHHHh
Confidence 45777664 6776543 222 345 89999999999998888887 66778877 677777777777
Q ss_pred hhhhCCceEEEEcCh
Q psy2842 268 CLVTSDANICVVEDD 282 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~ 282 (486)
+....++.++..+++
T Consensus 441 ~~~v~~~~vv~~~~~ 455 (516)
T PRK13383 441 HPAVADNAVIGVPDE 455 (516)
T ss_pred CCCeeEEEEEecccc
Confidence 666666666665543
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-15 Score=159.30 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=124.7
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C--CCceeccccccccccccccCCC-CCCCcCccccccCCceEEEECCCCC-
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L--DIPICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPDEE- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~--g~~i~~~yG~TE~~~~~~~~~~-~~~~~~s~G~p~p~~~~~i~d~~~~- 197 (486)
..++++||.+++||+++++++.+++.+ + ++++.+.||+||+++.+....+ ...+++++|.|+||++++|+|++|.
T Consensus 379 ~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~ 458 (655)
T PRK03584 379 THDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRP 458 (655)
T ss_pred cCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCC
Confidence 456789999999999999999999987 6 5789999999998765443322 2346799999999999999998874
Q ss_pred ---Cccceehh--------hhHhhHHHH--HHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 198 ---GNGEICLK--------EYEANVRTV--AKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 198 ---~~gel~~~--------~y~~~~~~~--a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
+.||+.++ +|+++++.. ...+.. ....++++||++..+.++++.++| +++.+|.. |+|.+
T Consensus 459 ~~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~-~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~r--I~p~E 535 (655)
T PRK03584 459 VVGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFD-TFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVR--IGTAE 535 (655)
T ss_pred CCCCceEEEEccCCCCCcceeeCCCccchHHHhhhc-cCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEE--ECHHH
Confidence 56888764 788877632 222211 122377899999999999999988 78889988 78999
Q ss_pred CHHHHHHhhhhCCceEEEEcCh
Q psy2842 261 SPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.|..+..+..+.++.++..+++
T Consensus 536 IE~~l~~~p~V~ea~vvg~~~~ 557 (655)
T PRK03584 536 IYRQVEALPEVLDSLVIGQEWP 557 (655)
T ss_pred HHHHHHhCCCcceEEEEeeEcC
Confidence 9999998888989988888775
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-15 Score=156.27 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=118.5
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCC-----------CCcCccccccCCceEEE
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKI 191 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~-----------~~~~s~G~p~p~~~~~i 191 (486)
.+++++|.+++||+++++++.+++++ +|++++++||+||+++..+.+.... ...+++|+|+|+++++|
T Consensus 290 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i 369 (539)
T PRK07008 290 LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKI 369 (539)
T ss_pred CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEE
Confidence 34589999999999999999999987 8999999999999987654432110 12468999999999999
Q ss_pred ECCCCC-------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeee
Q psy2842 192 VDPDEE-------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAA 254 (486)
Q Consensus 192 ~d~~~~-------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~v 254 (486)
+|+++. ..||++++ +|++++. ..+. +| |.++||++..+.++++.+.| +++.+|..
T Consensus 370 ~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~-~g---~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~- 441 (539)
T PRK07008 370 VGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLV-DG---WFPTGDVATIDADGFMQITDRSKDVIKSGGEW- 441 (539)
T ss_pred ECCCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhc-CC---CcccCceEEEcCCCcEEEeecccCEEEeCCeE-
Confidence 998654 24888876 6888763 2342 45 99999999999999888887 66788888
Q ss_pred ecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 255 GMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 255 pi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
++|.+.+..+..+..+.++.++..++.
T Consensus 442 -v~p~eIE~~l~~~p~v~~~~v~~~~~~ 468 (539)
T PRK07008 442 -ISSIDIENVAVAHPAVAEAACIACAHP 468 (539)
T ss_pred -EcHHHHHHHHHhCCceeEEEEEecCCc
Confidence 678888888888877888888877765
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-14 Score=150.78 Aligned_cols=147 Identities=25% Similarity=0.344 Sum_probs=113.2
Q ss_pred CceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCC----Ccc
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEE----GNG 200 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~----~~g 200 (486)
.++|.+++||+++++.+.++++..|+++++.||+||++..+....+. ..+++++|+|++++++++.|++.. ..|
T Consensus 254 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~~~~~~g~~G 333 (483)
T PRK03640 254 SSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFEEG 333 (483)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecCCCcCCCCCce
Confidence 68999999999999999999988999999999999987654433332 346799999999999999986311 458
Q ss_pred ceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhh
Q psy2842 201 EICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLV 270 (486)
Q Consensus 201 el~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~ 270 (486)
|++++ +|+++++.++..+ .+| |+++||++..+.++.+.++| .++.+|.. +++.+.++.+..+..
T Consensus 334 el~v~g~~~~~gy~~~~~~~~~~~-~~~---~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~--v~~~~ie~~i~~~~~ 407 (483)
T PRK03640 334 EIVVKGPNVTKGYLNREDATRETF-QDG---WFKTGDIGYLDEEGFLYVLDRRSDLIISGGEN--IYPAEIEEVLLSHPG 407 (483)
T ss_pred EEEEECcchhhhhcCCHHHHHHHH-hcC---CeeccceEEEcCCCCEEEeecccCeEEeCCEE--ECHHHHHHHHHhCCC
Confidence 88765 7999999988887 456 89999999999998888777 55667776 566666666555544
Q ss_pred hCCceEEEE
Q psy2842 271 TSDANICVV 279 (486)
Q Consensus 271 ~~~~~vvi~ 279 (486)
..++.++..
T Consensus 408 v~~~~v~~~ 416 (483)
T PRK03640 408 VAEAGVVGV 416 (483)
T ss_pred eeEEEEEeC
Confidence 444444433
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-15 Score=152.98 Aligned_cols=148 Identities=17% Similarity=0.242 Sum_probs=116.5
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----Ccc
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-----GNG 200 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-----~~g 200 (486)
.++|.+++||+++++++.+.|.+ +|+++++.||+||+++..+.+..++...+++|+|+++++++++|+++. ..|
T Consensus 278 ~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~G 357 (508)
T TIGR02262 278 VRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPG 357 (508)
T ss_pred ccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCcEEEEECCCCCCCCCCCee
Confidence 78999999999999999999998 899999999999998776655544556789999999999999997653 357
Q ss_pred ceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhh
Q psy2842 201 EICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLV 270 (486)
Q Consensus 201 el~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~ 270 (486)
|+.++ +|+++++.++..+. +| |.++||++..+.++.+.+.| +++.+|.. +++...++.+..+..
T Consensus 358 el~i~~~~~~~gY~~~~~~~~~~~~-~~---~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~--v~~~~ie~~l~~~~~ 431 (508)
T TIGR02262 358 ELLISGPSSATMYWNNRAKTRDTFQ-GE---WTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIY--VSPFEIESALIQHPA 431 (508)
T ss_pred EEEEecCccccccCCCHHHhHhhhh-cC---ceeccceEEEcCCccEEEeccccceeeeCCEE--ECHHHHHHHHHhCCC
Confidence 77664 89999998888773 45 89999999998888877777 56667776 566666666666555
Q ss_pred hCCceEEEEc
Q psy2842 271 TSDANICVVE 280 (486)
Q Consensus 271 ~~~~~vvi~~ 280 (486)
..++.++...
T Consensus 432 v~~~~~~~~~ 441 (508)
T TIGR02262 432 VLEAAVVGVE 441 (508)
T ss_pred eeEEEEEecc
Confidence 5555554443
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-15 Score=170.34 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=122.6
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-Cccc
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-GNGE 201 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-~~ge 201 (486)
.+++++|.+++||+++++++.+.+.+ +|+++++.||+||+++.++.+.+...+.+++|+|+|++++++.+.++. +.||
T Consensus 904 ~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~~~~~Ge 983 (1140)
T PRK06814 904 YDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGR 983 (1140)
T ss_pred ccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecCCCCCceE
Confidence 34589999999999999999999887 799999999999998877666555557889999999999999987642 5677
Q ss_pred eehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhh
Q psy2842 202 ICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVT 271 (486)
Q Consensus 202 l~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~ 271 (486)
+.++ ||+++++........+| |.+|||++..+.++++.++| .++.+|.. ++|.+.|+.+..+...
T Consensus 984 l~v~g~~~~~gY~~~~~~~~~~~~~~g---~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~--v~~~eIE~~l~~~~~v 1058 (1140)
T PRK06814 984 LFVRGPNVMLGYLRAENPGVLEPPADG---WYDTGDIVTIDEEGFITIKGRAKRFAKIAGEM--ISLAAVEELAAELWPD 1058 (1140)
T ss_pred EEEeCCCcchhhcCCCCCCccccCCCC---eEecCCEEEECCCCeEEEEecccCeeeeCCEE--ECHHHHHHHHHhcCCc
Confidence 7764 78876432111111234 99999999999999998888 67788888 6888888888888777
Q ss_pred CCceEEEEcCh
Q psy2842 272 SDANICVVEDD 282 (486)
Q Consensus 272 ~~~~vvi~~~~ 282 (486)
.++.++..+++
T Consensus 1059 ~~~~vv~~~~~ 1069 (1140)
T PRK06814 1059 ALHAAVSIPDA 1069 (1140)
T ss_pred ccEEEEEcccC
Confidence 88888877765
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-15 Score=153.07 Aligned_cols=118 Identities=30% Similarity=0.510 Sum_probs=98.7
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCC-ceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCC-CC--
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDI-PICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD-EE-- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~-~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~-~~-- 197 (486)
+++++|.+++||+++++++.+++++ ++. ++++.||+||++..++..... ..+.+++|+|+|+++++|+|++ +.
T Consensus 275 ~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~ 354 (417)
T PF00501_consen 275 DLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPL 354 (417)
T ss_dssp TGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBE
T ss_pred ccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccc
Confidence 5578999999999999999999999 676 899999999999988755322 2477899999999999999987 32
Q ss_pred ---Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH
Q psy2842 198 ---GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245 (486)
Q Consensus 198 ---~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g 245 (486)
+.||+.++ +|+++++.+++.|.++| |.++||++..+.++.+.++|
T Consensus 355 ~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~---~~~TGD~g~~d~~G~~~~~G 408 (417)
T PF00501_consen 355 PPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDG---WYRTGDLGRLDEDGYLYILG 408 (417)
T ss_dssp STTSEEEEEEESTTSBSEETTBHHHHHHHEETTS---EEEEEEEEEEETTSEEEEEE
T ss_pred cccccccccccCCccceeeecccccccccccccc---ceecceEEEECCCCeEEEEE
Confidence 56888875 89999999999986545 99999999999888887776
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-14 Score=149.17 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=119.6
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEEC-CCCC---
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD-PDEE--- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d-~~~~--- 197 (486)
...++++|.+++||+++++++.++|++ ++.++++.||+||++...+.........+++|.|+++++++|+| +++.
T Consensus 265 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~ 344 (504)
T PRK07514 265 REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELP 344 (504)
T ss_pred cccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEEEECCCCCCCC
Confidence 345689999999999999999999998 79999999999998765543333344568899999999999999 4443
Q ss_pred --Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.||+.+ .+|+++++.+++.|..+| |.++||++..+.++.+.++| .++.+|.. ++|.+.+..+
T Consensus 345 ~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~---~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~--i~~~~IE~~l 419 (504)
T PRK07514 345 PGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADG---FFITGDLGKIDERGYVHIVGRGKDLIISGGYN--VYPKEVEGEI 419 (504)
T ss_pred CCCceEEEEecCCccccccCCchhhhhhcccCC---CeeecceEEEcCCccEEEeccccceEEeCCeE--ECHHHHHHHH
Confidence 4678775 489999999988886666 89999999999998888887 56677776 5666666666
Q ss_pred HHhhhhCCceEEEEcC
Q psy2842 266 LHCLVTSDANICVVED 281 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~ 281 (486)
..+..+.++.++..++
T Consensus 420 ~~~~~v~~~~v~~~~~ 435 (504)
T PRK07514 420 DELPGVVESAVIGVPH 435 (504)
T ss_pred HhCCCeeEEEEEeCCC
Confidence 6655555555554443
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-14 Score=154.05 Aligned_cols=154 Identities=23% Similarity=0.374 Sum_probs=121.6
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CC-CceeccccccccccccccCCCC---CCCcCccccccCCceEEEECCCCC-
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LD-IPICEVFGMSECAGAHTVSAPD---DFKLDGVGRTIPGTQTKIVDPDEE- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g-~~i~~~yG~TE~~~~~~~~~~~---~~~~~s~G~p~p~~~~~i~d~~~~- 197 (486)
.+++++|.+++||+++++++.+++.+ ++ ..+.+.||+||++++++.+... ..+.+++|+|+|++.++|+|+++.
T Consensus 314 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~ 393 (558)
T PRK12583 314 FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGAT 393 (558)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCC
Confidence 44589999999999999999999887 65 5799999999999876655432 235789999999999999998754
Q ss_pred ----Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHH
Q psy2842 198 ----GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPE 263 (486)
Q Consensus 198 ----~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~ 263 (486)
+.||+.+ .+|+++++.+...+..+| |.++||++..+.++.+.+.| .++.+|.. ++|.+.++
T Consensus 394 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~---~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~--v~~~~IE~ 468 (558)
T PRK12583 394 VPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDG---WMHTGDLATMDEQGYVRIVGRSKDMIIRGGEN--IYPREIEE 468 (558)
T ss_pred CCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCC---CeeccceEEECCCccEEEEecccceeEECCEE--eCHHHHHH
Confidence 4688865 589999998887775555 89999999999998888887 56677776 67777777
Q ss_pred HHHHhhhhCCceEEEEcCh
Q psy2842 264 ACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 264 ~l~~~~~~~~~~vvi~~~~ 282 (486)
.+..+....++.++..+++
T Consensus 469 ~l~~~~~v~~~~v~~~~~~ 487 (558)
T PRK12583 469 FLFTHPAVADVQVFGVPDE 487 (558)
T ss_pred HHHhCCCeeEEEEEeeecC
Confidence 7776666666666655543
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.5e-15 Score=154.66 Aligned_cols=153 Identities=25% Similarity=0.406 Sum_probs=118.3
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCc-eeccccccccccccccCCCCC---CCcCccccccCCceEEEECCC-CC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIP-ICEVFGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQTKIVDPD-EE 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~-i~~~yG~TE~~~~~~~~~~~~---~~~~s~G~p~p~~~~~i~d~~-~~ 197 (486)
.+++++|.+++||+++++++.+.+.+ ++.. +++.||+||++..++...... .+.+++|+|+|+++++|+|++ +.
T Consensus 312 ~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~ 391 (559)
T PRK08315 312 FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGE 391 (559)
T ss_pred CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCC
Confidence 35589999999999999999999887 7655 999999999987665443322 357899999999999999977 43
Q ss_pred -----Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 -----GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 -----~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.||+.+ .||++++..++..+..++ |+++||++..+.++.+.++| .++.+|.. +++.+.+
T Consensus 392 ~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~---~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~--v~~~eIE 466 (559)
T PRK08315 392 TVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADG---WMHTGDLAVMDEEGYVNIVGRIKDMIIRGGEN--IYPREIE 466 (559)
T ss_pred cCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCC---CEEccceEEEcCCceEEEEeeccceEEECCEE--EcHHHHH
Confidence 5688776 489999988887774455 89999999999888888877 55667776 5666666
Q ss_pred HHHHHhhhhCCceEEEEcC
Q psy2842 263 EACLHCLVTSDANICVVED 281 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~ 281 (486)
+.+..+..+.++.++...+
T Consensus 467 ~~l~~~~~v~~~~v~~~~~ 485 (559)
T PRK08315 467 EFLYTHPKIQDVQVVGVPD 485 (559)
T ss_pred HHHHhCCCceEEEEEecCC
Confidence 6666666565665555544
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-14 Score=151.10 Aligned_cols=153 Identities=18% Similarity=0.320 Sum_probs=121.5
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCC-CCcCccccccCCceEEEECCCCC----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~-~~~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
.+++++|.+++||+++++.+.++|++ +|.++++.||+||++..++.+.... ...+++|.|+|+++++|+|+++.
T Consensus 322 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~ 401 (560)
T PRK08974 322 LDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPP 401 (560)
T ss_pred CCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCC
Confidence 34578999999999999999999998 7999999999999987766554332 34689999999999999998764
Q ss_pred -Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||+.. .+|+++++.++..+ .+| |.++||++..+.++.+.++| +++.+|.. ++|...|+.+.
T Consensus 402 g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g---~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~--i~~~~IE~~l~ 475 (560)
T PRK08974 402 GEPGELWVKGPQVMLGYWQRPEATDEVI-KDG---WLATGDIAVMDEEGFLRIVDRKKDMILVSGFN--VYPNEIEDVVM 475 (560)
T ss_pred CCceEEEEecCCcchhhcCChhhhhhhh-hcC---CcccCCEEEEcCCceEEEEecccceEEeCCEE--ECHHHHHHHHH
Confidence 4577775 48999988888877 556 89999999998888777777 56667776 67777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+....++.++..+++
T Consensus 476 ~~~~v~~~~v~~~~~~ 491 (560)
T PRK08974 476 LHPKVLEVAAVGVPSE 491 (560)
T ss_pred hCCCeeEEEEEeeecC
Confidence 7766666666655543
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-14 Score=154.03 Aligned_cols=153 Identities=20% Similarity=0.295 Sum_probs=120.4
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCC-CCCCcCccccccCCceEEEECCCCC----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~-~~~~~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
.+++++|.+++||+++++++.+++.+ +|.++++.||+||+++....... ....++++|+|+++++++++|+++.
T Consensus 320 ~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~ 399 (563)
T PRK06710 320 YDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALP 399 (563)
T ss_pred CChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCC
Confidence 34578999999999999999999988 79999999999999876543322 2235689999999999999985432
Q ss_pred --Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.|++.+ .+|+++++.++..+. +| |.++||++..+.++.+.++| .++.+|.. ++|.+.+..+
T Consensus 400 ~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g---~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~--v~p~eiE~~l 473 (563)
T PRK06710 400 PGEIGEIVVKGPQIMKGYWNKPEETAAVLQ-DG---WLHTGDVGYMDEDGFFYVKDRKKDMIVASGFN--VYPREVEEVL 473 (563)
T ss_pred CCCceEEEEecCccchhhhCChHHHhhhcc-cC---cccccceEEEcCCCcEEEeeccccEEEECCEE--ECHHHHHHHH
Confidence 4577776 489999998888773 55 99999999999998888887 56677877 6777777777
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+..+.++.++..+++
T Consensus 474 ~~~~~v~~~~v~~~~~~ 490 (563)
T PRK06710 474 YEHEKVQEVVTIGVPDP 490 (563)
T ss_pred HhCcceeeEEEEccccC
Confidence 77776777666665543
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-14 Score=155.49 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=124.8
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CC--CceeccccccccccccccC-CCCCCCcCccccccCCceEEEECCCCC
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LD--IPICEVFGMSECAGAHTVS-APDDFKLDGVGRTIPGTQTKIVDPDEE 197 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g--~~i~~~yG~TE~~~~~~~~-~~~~~~~~s~G~p~p~~~~~i~d~~~~ 197 (486)
..+++++||.+++||+++++++.+++.+ ++ +.+.+.||+||+++..... +......|++|.|.+|++++|+|++|.
T Consensus 379 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~ 458 (652)
T TIGR01217 379 RTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGK 458 (652)
T ss_pred ccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCC
Confidence 3467899999999999999999999987 64 5678999999975444332 222335689999999999999998875
Q ss_pred ----Cccceehh--------hhHhhHHHHH--HHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 198 ----GNGEICLK--------EYEANVRTVA--KAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 198 ----~~gel~~~--------~y~~~~~~~a--~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
+.||+.++ +||++++.+. +.+... ...+.++||++..+.++++.++| +++.||.. |+|.
T Consensus 459 ~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~-~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~r--i~p~ 535 (652)
T TIGR01217 459 PVTGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDT-YPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVR--MGSA 535 (652)
T ss_pred CCCCCccEEEEecCCCccccceeCCCccchhHHhhhcC-CCCEEEcCCcEEECCCCcEEEEecccCeEecCCEE--cCHH
Confidence 56888653 7888886432 222121 12267889999999999999988 78899998 7999
Q ss_pred CCHHHHHHhhhhCCceEEEEcCh
Q psy2842 260 NSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.|..+..+..+.++.++.++++
T Consensus 536 EIE~~l~~~p~V~eaavvg~~~~ 558 (652)
T TIGR01217 536 EIYNAVERLDEVRESLCIGQEQP 558 (652)
T ss_pred HHHHHHHhCCCcceEEEEeeecC
Confidence 99999999999999999988876
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-14 Score=149.48 Aligned_cols=150 Identities=20% Similarity=0.234 Sum_probs=119.5
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEECCCCC-----Cc
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPDEE-----GN 199 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d~~~~-----~~ 199 (486)
.+++.+.++ .+++++....|.+ +|+++++.||+||+++.++...+. ....+++|+|+++++++|+|+++. ..
T Consensus 288 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~ 366 (517)
T PRK08008 288 HCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI 366 (517)
T ss_pred ccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc
Confidence 457777665 4788888888887 799999999999998665544332 335689999999999999998765 45
Q ss_pred cceehh---------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 200 GEICLK---------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 200 gel~~~---------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
||++++ +|+++++.+++.|..+| |.++||++..+.++.+.++| +++.+|.. |+|.+.|..+.
T Consensus 367 Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g---~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~--i~p~~iE~~l~ 441 (517)
T PRK08008 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADG---WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGEN--VSCVELENIIA 441 (517)
T ss_pred ceEEEeCCCCcchhhhHhCChHHHhhcccCCC---CeeccceEEECCCCcEEEeecccceEEeCCEE--ECHHHHHHHHH
Confidence 777653 89999999999987777 99999999999999888887 66778887 67877788777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..++.
T Consensus 442 ~~~~v~~~~v~g~~~~ 457 (517)
T PRK08008 442 THPKIQDIVVVGIKDS 457 (517)
T ss_pred hCCceeeEEEEccCCC
Confidence 7777777777766554
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-14 Score=150.08 Aligned_cols=152 Identities=21% Similarity=0.331 Sum_probs=119.0
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCceEEEEC--CCCC---
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVD--PDEE--- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~~~~i~d--~~~~--- 197 (486)
+++++|.+++||+++++++.+++.+ ++.++++.||+||++..++..... ...++++|+|++++++++.+ +++.
T Consensus 310 ~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~ 389 (541)
T TIGR03205 310 DLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLP 389 (541)
T ss_pred CccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCC
Confidence 4578999999999999999999987 799999999999998776654432 23568999999999998864 3322
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.|++.++ +|+++++.+++.|. .+ |+++||++..+.++.+.++| +++.+|.. ++|.+.|..+
T Consensus 390 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~---~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~--i~~~eIE~~l 463 (541)
T TIGR03205 390 PGEVGELRIRGPNVTRGYWNRPEESAEAFV-GD---RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFN--VYPQMIEQAI 463 (541)
T ss_pred CCCeeEEEEecCCccccccCChhhhHhhhc-cC---CcccCceEEEcCCceEEEEccccCeEEECCEE--ECHHHHHHHH
Confidence 45888775 69999998888874 44 78999999999988888887 66788877 6777777777
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+....++.++..+++
T Consensus 464 ~~~~~v~~~~v~~~~~~ 480 (541)
T TIGR03205 464 YEHPGVQEVIVIGIPDQ 480 (541)
T ss_pred HhCCCeeeEEEEecCCc
Confidence 66666666666655543
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-15 Score=154.25 Aligned_cols=149 Identities=19% Similarity=0.293 Sum_probs=118.0
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh----CCC---ceeccccccccccccccCCCC---------------CCCcCcc
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS----LDI---PICEVFGMSECAGAHTVSAPD---------------DFKLDGV 180 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~----~g~---~i~~~yG~TE~~~~~~~~~~~---------------~~~~~s~ 180 (486)
..+++++|.+++||+++++++.++|.+ +|+ .+++.||+||++..++...+. ..+.+++
T Consensus 268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 347 (525)
T PRK05851 268 DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVL 347 (525)
T ss_pred CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeee
Confidence 455689999999999999999998875 465 499999999998766543221 1245789
Q ss_pred ccccCCceEEEECCCCC------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH---
Q psy2842 181 GRTIPGTQTKIVDPDEE------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG--- 245 (486)
Q Consensus 181 G~p~p~~~~~i~d~~~~------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g--- 245 (486)
|+|+||++++|+|+++. +.||++++ ||+++++. ..+| |+++||++..+ ++.+.++|
T Consensus 348 G~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~-----~~~~---~~~TGDl~~~~-~G~l~~~GR~d 418 (525)
T PRK05851 348 GNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPI-----DPDD---WFPTGDLGYLV-DGGLVVCGRAK 418 (525)
T ss_pred cCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCcc-----CCCC---ceeccceEEEE-CCEEEEEeecC
Confidence 99999999999997653 46888764 78888742 2344 99999999986 67777887
Q ss_pred -HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 246 -AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 246 -~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+++.+|.. |+|.+.|..+..+..+.++.++.++++
T Consensus 419 d~i~~~G~~--v~p~eIE~~l~~~p~V~~~~vv~~~~~ 454 (525)
T PRK05851 419 ELITVAGRN--IFPTEIERVAAQVRGVREGAVVAVGTG 454 (525)
T ss_pred CEEEECCEE--eCHHHHHHHHHhCCCcccceEEEEEec
Confidence 78889988 799999999999988889888887765
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-14 Score=149.20 Aligned_cols=147 Identities=24% Similarity=0.293 Sum_probs=115.4
Q ss_pred ceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCC--CCcCccccccCCceEEEECCCCC-----C
Q psy2842 128 RCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEE-----G 198 (486)
Q Consensus 128 ~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~--~~~~s~G~p~p~~~~~i~d~~~~-----~ 198 (486)
++|.+++||+++++++.+++++ + +.++++.||+||+++..+....+. ...+++|+|+|++.++|+|+++. +
T Consensus 291 ~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~ 370 (542)
T PRK07786 291 ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGE 370 (542)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCC
Confidence 6899999999999999999998 6 889999999999987655433322 35689999999999999997664 4
Q ss_pred ccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.||+.+ ++|+++++.++..|. .| |.++||++..+.++.+.++| .++.+|.. +++.+.+..+..+
T Consensus 371 ~Gel~v~g~~~~~gy~~~~~~~~~~f~-~~---~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~--v~~~eiE~~l~~~ 444 (542)
T PRK07786 371 VGEIVYRAPTLMSGYWNNPEATAEAFA-GG---WFHSGDLVRQDEEGYVWVVDRKKDMIISGGEN--IYCAEVENVLASH 444 (542)
T ss_pred ceEEEEEChhhhhhhcCCHHHHHHHhh-CC---cccccceEEEcCCceEEEEecccceEEeCCEE--ECHHHHHHHHHhC
Confidence 577775 589999999988883 45 89999999999888888877 55677776 5666666666666
Q ss_pred hhhCCceEEEEc
Q psy2842 269 LVTSDANICVVE 280 (486)
Q Consensus 269 ~~~~~~~vvi~~ 280 (486)
....++.++...
T Consensus 445 ~~v~~~~v~~~~ 456 (542)
T PRK07786 445 PDIVEVAVIGRA 456 (542)
T ss_pred CCccEEEEEecc
Confidence 555555444443
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-14 Score=150.83 Aligned_cols=150 Identities=16% Similarity=0.216 Sum_probs=113.5
Q ss_pred CceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC--------------CCCcCccccccCCceEEEE
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD--------------DFKLDGVGRTIPGTQTKIV 192 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~--------------~~~~~s~G~p~p~~~~~i~ 192 (486)
.+++.+++||+++++.+.++++++|++++++||+||+++.++..... ....+..+.|+++++++..
T Consensus 300 ~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~ 379 (579)
T PLN03102 300 SGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNK 379 (579)
T ss_pred ccceEEEECCCCCCHHHHHHHHHcCCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceEEecc
Confidence 56788999999999999999988999999999999998654432110 0123555566665554432
Q ss_pred CC------CCCCccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeec
Q psy2842 193 DP------DEEGNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGM 256 (486)
Q Consensus 193 d~------~~~~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi 256 (486)
+. ++...||+++ .||+++++.+++.|. +| |++|||+++.+.++++.+.| +++.+|.. |
T Consensus 380 ~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-~g---w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~--v 453 (579)
T PLN03102 380 ETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-HG---WLNTGDVGVIHPDGHVEIKDRSKDIIISGGEN--I 453 (579)
T ss_pred ccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhc-cC---ceecCceEEEcCCCeEEEEeccCcEEEECCEE--E
Confidence 11 1113588876 489999999998884 56 99999999999999988887 66678877 7
Q ss_pred CCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 257 YTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+|.+.|..+..+..+.++.++..+++
T Consensus 454 ~p~eIE~~l~~~p~V~~a~vv~~~~~ 479 (579)
T PLN03102 454 SSVEVENVLYKYPKVLETAVVAMPHP 479 (579)
T ss_pred CHHHHHHHHHhCCCcceeEEEeccCc
Confidence 88888888888888888888877765
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-14 Score=148.44 Aligned_cols=147 Identities=23% Similarity=0.390 Sum_probs=112.5
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCC------CcCccccccCCceEEEECCCCC
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDF------KLDGVGRTIPGTQTKIVDPDEE 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~------~~~s~G~p~p~~~~~i~d~~~~ 197 (486)
.++++|.+++||+++++++.+++.+ +++++++.||+||+++..+....... ..+++|+|+|+++++|+|+++.
T Consensus 279 ~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~ 358 (521)
T PRK06187 279 DFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGD 358 (521)
T ss_pred CcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCC
Confidence 4478999999999999999999998 69999999999999877666544333 6789999999999999998763
Q ss_pred -------Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 198 -------GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 198 -------~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
..||+.+ .+|+.+++.+.+.+. +| |.++||++..+.++.+.+.| .++.+|.. +++..
T Consensus 359 ~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-~~---~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~--v~~~~ 432 (521)
T PRK06187 359 ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID-GG---WLHTGDVGYIDEDGYLYITDRIKDVIISGGEN--IYPRE 432 (521)
T ss_pred CCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh-CC---ceeccceEEEcCCCCEEEeecccceEEcCCeE--ECHHH
Confidence 4578776 488888888888774 45 99999999999888877776 44555655 45555
Q ss_pred CHHHHHHhhhhCCceEE
Q psy2842 261 SPEACLHCLVTSDANIC 277 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vv 277 (486)
.++.+..+....++.++
T Consensus 433 IE~~l~~~~~v~~~~v~ 449 (521)
T PRK06187 433 LEDALYGHPAVAEVAVI 449 (521)
T ss_pred HHHHHHhCCCceEEEEE
Confidence 55555444444444343
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-14 Score=149.06 Aligned_cols=157 Identities=19% Similarity=0.245 Sum_probs=119.2
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-C---CCc---eeccccccccccccccCCCCC--------------------
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-L---DIP---ICEVFGMSECAGAHTVSAPDD-------------------- 174 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~---g~~---i~~~yG~TE~~~~~~~~~~~~-------------------- 174 (486)
..++++++| +++||+++++++.+.|++ + |++ ++++||+||++..++...+..
T Consensus 313 ~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 391 (612)
T PRK12476 313 DDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRV 391 (612)
T ss_pred cCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeec
Confidence 355789999 999999999999999887 5 554 899999999876554332211
Q ss_pred -------CCcCccccccCCceEEEECCC-CC-----Cccceehh------hhHhhHHHHHHHHHH-------cC------
Q psy2842 175 -------FKLDGVGRTIPGTQTKIVDPD-EE-----GNGEICLK------EYEANVRTVAKAFLK-------LG------ 222 (486)
Q Consensus 175 -------~~~~s~G~p~p~~~~~i~d~~-~~-----~~gel~~~------~y~~~~~~~a~~l~~-------~g------ 222 (486)
.+.+++|+|+|+++++|+|++ +. +.|||+++ ||+++++++++.|.. +|
T Consensus 392 ~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~ 471 (612)
T PRK12476 392 AADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGA 471 (612)
T ss_pred CCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccc
Confidence 123689999999999999977 54 46788764 899999999998853 22
Q ss_pred --CcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH-hhhhCC--ceEEEEcCh
Q psy2842 223 --LERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH-CLVTSD--ANICVVEDD 282 (486)
Q Consensus 223 --~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~-~~~~~~--~~vvi~~~~ 282 (486)
-..|.++||++..+ ++++.++| +++.+|.. |+|.+.|+.+.. +..+.+ +.++.++++
T Consensus 472 ~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~--I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~ 537 (612)
T PRK12476 472 ADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDGRN--HYPQDIEATVAEASPMVRRGYVTAFTVPAE 537 (612)
T ss_pred cCCCCeeeccccceeE-CCEEEEEeccCcEEEECCcc--cCHHHHHHHHHHhcccccCCcEEEEEecCC
Confidence 12499999999874 88888888 78889988 788888888764 566666 334444443
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-14 Score=166.73 Aligned_cols=151 Identities=14% Similarity=0.131 Sum_probs=121.1
Q ss_pred CCceeEEEeccCCCCHHHHHHHHhC--CCceeccccccccccccccCCCCC-----------CCcCccccccCCceEEEE
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKIV 192 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~~--g~~i~~~yG~TE~~~~~~~~~~~~-----------~~~~s~G~p~p~~~~~i~ 192 (486)
++++|.+++||+++++.+.+.+.++ ++.++++||+||++..++...... ....++|+|+++++++|+
T Consensus 528 ~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv 607 (1389)
T TIGR03443 528 IPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVV 607 (1389)
T ss_pred CCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEE
Confidence 4789999999999999999998873 789999999999987655432110 124679999999999999
Q ss_pred CCCCC-------Cccceehh------hhHhhHHHHHHHHHHc-------------------------CCcccceEEEEee
Q psy2842 193 DPDEE-------GNGEICLK------EYEANVRTVAKAFLKL-------------------------GLERYHSVCIIGF 234 (486)
Q Consensus 193 d~~~~-------~~gel~~~------~y~~~~~~~a~~l~~~-------------------------g~~~~~~vg~~~~ 234 (486)
|+++. ..|||+++ ||+++++.+++.|... .-..|++|||++.
T Consensus 608 d~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~ 687 (1389)
T TIGR03443 608 NRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGR 687 (1389)
T ss_pred CCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCcee
Confidence 96542 56888874 7999999999988532 0135899999999
Q ss_pred cCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 235 NAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 235 ~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+.++.+.++| .++.+|.. |+|.+.|..+..+..+.++.+++
T Consensus 688 ~~~dG~l~~~GR~dd~Iki~G~r--I~p~eIE~~l~~~p~V~~a~v~~ 733 (1389)
T TIGR03443 688 YLPDGNVECCGRADDQVKIRGFR--IELGEIDTHLSQHPLVRENVTLV 733 (1389)
T ss_pred EcCCCCEEEecccCCEEEeCcEE--ecHHHHHHHHHhCcchheeEEEE
Confidence 99999999998 78889998 78888998888887776665543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-14 Score=144.64 Aligned_cols=144 Identities=24% Similarity=0.331 Sum_probs=114.3
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCC--CCcCccccccCCceEEEECCCCCCccce
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEEGNGEI 202 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~--~~~~s~G~p~p~~~~~i~d~~~~~~gel 202 (486)
+++++|.+++||+++++++.++++.+|+++++.||+||+++.++...+.+ ...+++|+|+|+++++|++. +.||+
T Consensus 228 ~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~g---~~Gel 304 (452)
T PRK07445 228 WLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPAN---QTGNI 304 (452)
T ss_pred hhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcCC---CcceE
Confidence 35899999999999999999998888999999999999986655444332 24678999999999999721 36777
Q ss_pred ehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhC
Q psy2842 203 CLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTS 272 (486)
Q Consensus 203 ~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~ 272 (486)
.++ +|+++.. ..+| |.++||++..+.++++.+.| +++.+|.. |+|.+.|..+..+..+.
T Consensus 305 ~v~g~~~~~gY~~~~~------~~~g---~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~--V~p~eIE~~l~~~p~V~ 373 (452)
T PRK07445 305 TIQAQSLALGYYPQIL------DSQG---IFETDDLGYLDAQGYLHILGRNSQKIITGGEN--VYPAEVEAAILATGLVQ 373 (452)
T ss_pred EEeCCccchhhcCCcc------CCCC---EEECCCEEEEcCCCCEEEEeecCCEEEECCEE--ECHHHHHHHHHhCCCcc
Confidence 664 6776421 1234 89999999999999988888 67788888 78888888888888888
Q ss_pred CceEEEEcCh
Q psy2842 273 DANICVVEDD 282 (486)
Q Consensus 273 ~~~vvi~~~~ 282 (486)
++.++..+++
T Consensus 374 ~a~V~g~~~~ 383 (452)
T PRK07445 374 DVCVLGLPDP 383 (452)
T ss_pred eEEEEeccCc
Confidence 8877777654
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-14 Score=149.30 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=121.4
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C---CC---ceeccccccccccccccCCCCC---------------------
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L---DI---PICEVFGMSECAGAHTVSAPDD--------------------- 174 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~---g~---~i~~~yG~TE~~~~~~~~~~~~--------------------- 174 (486)
.++++++|.+++||+++++++.++|.+ + |+ .++++||+||+++.++..+...
T Consensus 302 ~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 381 (631)
T PRK07769 302 PLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVP 381 (631)
T ss_pred CcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecC
Confidence 467899999999999999999999887 5 44 4999999999887665443211
Q ss_pred ------CCcCccccccCCceEEEECCC-CC-----Cccceehh------hhHhhHHHHHHHHHHc-----------C---
Q psy2842 175 ------FKLDGVGRTIPGTQTKIVDPD-EE-----GNGEICLK------EYEANVRTVAKAFLKL-----------G--- 222 (486)
Q Consensus 175 ------~~~~s~G~p~p~~~~~i~d~~-~~-----~~gel~~~------~y~~~~~~~a~~l~~~-----------g--- 222 (486)
...+++|+|+|+.+++|+|++ +. +.|||+++ ||+++++.+++.|... |
T Consensus 382 ~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~ 461 (631)
T PRK07769 382 ADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPD 461 (631)
T ss_pred CCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCccc
Confidence 013589999999999999953 32 56888875 8999999999998531 1
Q ss_pred CcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH-hhhhCC--ceEEEEcCh
Q psy2842 223 LERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH-CLVTSD--ANICVVEDD 282 (486)
Q Consensus 223 ~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~-~~~~~~--~~vvi~~~~ 282 (486)
-..|++|||++..+ ++++.++| +++.||.. |+|.+.|..+.. +..+.+ +.++.++++
T Consensus 462 ~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~--V~p~eIE~~l~~~~p~v~~~~~av~~v~d~ 525 (631)
T PRK07769 462 DALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRN--HYPQDLEYTAQEATKALRTGYVAAFSVPAN 525 (631)
T ss_pred CCCeeeccccccEE-CCEEEEEcccccEEEECCee--eCHHHHHHHHHhccccccCCcEEEEEeccc
Confidence 12499999999985 88888888 78889988 688888888875 566565 666666664
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-14 Score=165.84 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=122.6
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-------CCCcCccccccCCceEEEECCCCC
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-------DFKLDGVGRTIPGTQTKIVDPDEE 197 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-------~~~~~s~G~p~p~~~~~i~d~~~~ 197 (486)
+.++|.+++||+++++++.+.|.+ +|+++++.||+||++..++..... .....++|+|+++++++|+|+++.
T Consensus 716 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~ 795 (1296)
T PRK10252 716 CASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMR 795 (1296)
T ss_pred CCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCC
Confidence 478999999999999999999988 699999999999998665544322 123467999999999999997765
Q ss_pred -----Cccceehh------hhHhhHHHHHHHHHHcCC---cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 198 -----GNGEICLK------EYEANVRTVAKAFLKLGL---ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 198 -----~~gel~~~------~y~~~~~~~a~~l~~~g~---~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
..||+.++ ||+++++.+++.|..++. .+|+++||++..+.++.+.++| .++.+|.. |++.
T Consensus 796 ~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~r--i~~~ 873 (1296)
T PRK10252 796 PVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQR--IELG 873 (1296)
T ss_pred CCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEE--ecHH
Confidence 56888764 899999999999876543 3479999999999999998888 66788888 7888
Q ss_pred CCHHHHHHhhhhCCceEE
Q psy2842 260 NSPEACLHCLVTSDANIC 277 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vv 277 (486)
+.+..+..+..+.++.++
T Consensus 874 eIE~~l~~~~~v~~a~v~ 891 (1296)
T PRK10252 874 EIDRAMQALPDVEQAVTH 891 (1296)
T ss_pred HHHHHHHhCccccceEEE
Confidence 888888887777666443
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-14 Score=150.39 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=115.2
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCC--------CCcCccccccCCceEEEECCCC-
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDD--------FKLDGVGRTIPGTQTKIVDPDE- 196 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~--------~~~~s~G~p~p~~~~~i~d~~~- 196 (486)
.++|.+++||+++++++.++|++ +|++++++||+||++..++...+.+ ....++|++.++++++++|++.
T Consensus 298 ~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~g~~ 377 (576)
T PRK05620 298 MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQV 377 (576)
T ss_pred CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecCCcc
Confidence 57999999999999999999987 7999999999999987665543321 1135789999999999998621
Q ss_pred -----CCccceeh------hhhHhhHHHH----HHHHHHcC---------CcccceEEEEeecCCchhhhhHH----HhH
Q psy2842 197 -----EGNGEICL------KEYEANVRTV----AKAFLKLG---------LERYHSVCIIGFNAPEWFYSDLG----AIY 248 (486)
Q Consensus 197 -----~~~gel~~------~~y~~~~~~~----a~~l~~~g---------~~~~~~vg~~~~~~~~~~~~~~g----~~~ 248 (486)
+..||+++ .+|+++++.+ +..|..+. -..|.++||++..+.++.+.+.| +++
T Consensus 378 ~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~ 457 (576)
T PRK05620 378 MESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIR 457 (576)
T ss_pred ccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhh
Confidence 13577765 4899988766 33332110 12389999999999999888877 677
Q ss_pred cCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 249 AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 249 ~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.+|.. +++.+.+..+..+..+.++.++..+++
T Consensus 458 ~~G~~--i~~~eIE~~l~~~p~v~~~~vv~~~~~ 489 (576)
T PRK05620 458 SGGEW--IYSAQLENYIMAAPEVVECAVIGYPDD 489 (576)
T ss_pred cCCEE--EcHHHHHHHHhcCCCceEEEEEeccCC
Confidence 88887 677777777777766667666666554
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-14 Score=141.84 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=110.9
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CC-CceeccccccccccccccCCCC---CC--CcCccccccCCceEEEECCCCC
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LD-IPICEVFGMSECAGAHTVSAPD---DF--KLDGVGRTIPGTQTKIVDPDEE 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g-~~i~~~yG~TE~~~~~~~~~~~---~~--~~~s~G~p~p~~~~~i~d~~~~ 197 (486)
+++++|.+++||+++++++.+++.+ ++ +.++++||+||+++.++..... .. +.+++|+|+|+++++|+|+++.
T Consensus 232 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~ 311 (408)
T TIGR01733 232 ALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLR 311 (408)
T ss_pred cccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCCCC
Confidence 4589999999999999999999998 76 8999999999998776532211 11 2788999999999999998753
Q ss_pred -----Cccceehh------hhHhhHHHHHHHHHHcCCc-----ccceEEEEeecCCchhhhhHH----HhHcCCeeeecC
Q psy2842 198 -----GNGEICLK------EYEANVRTVAKAFLKLGLE-----RYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMY 257 (486)
Q Consensus 198 -----~~gel~~~------~y~~~~~~~a~~l~~~g~~-----~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~ 257 (486)
+.||+..+ +|+++++.+.+.|...... +|.++||++..+.++.+.+.| +++.+|.. ++
T Consensus 312 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~--v~ 389 (408)
T TIGR01733 312 PVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYR--IE 389 (408)
T ss_pred CCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEE--ec
Confidence 45777764 8999998888877554332 289999999999888887777 55677777 56
Q ss_pred CCCCHHHHHHhhh
Q psy2842 258 TTNSPEACLHCLV 270 (486)
Q Consensus 258 ~~~~~~~l~~~~~ 270 (486)
|.+.++.+..+..
T Consensus 390 ~~~ie~~l~~~~~ 402 (408)
T TIGR01733 390 LGEIEAALLRHPG 402 (408)
T ss_pred hHHHHHHHhcCcc
Confidence 6666665554443
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-14 Score=146.34 Aligned_cols=149 Identities=17% Similarity=0.258 Sum_probs=117.4
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----C
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-----G 198 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-----~ 198 (486)
.++++|.++.|| +++++.+.+++ +|+++++.||+||++..++.+. ...+++++|.|+++++++|+|+++. .
T Consensus 292 ~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~ 368 (542)
T PRK06155 292 RAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVDEHDQELPDGE 368 (542)
T ss_pred ccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEEEECCCCCCCCCCC
Confidence 347899888766 56888888887 8999999999999988766543 3456789999999999999997764 3
Q ss_pred ccceeh---------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 199 NGEICL---------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 199 ~gel~~---------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
.||+.+ .||+++++.++..+ .+| |+++||++..+.++.+.++| +++.+|.. ++|.+.++.+
T Consensus 369 ~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~---~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~--v~p~eIE~~l 442 (542)
T PRK06155 369 PGELLLRADEPFAFATGYFGMPEKTVEAW-RNL---WFHTGDRVVRDADGWFRFVDRIKDAIRRRGEN--ISSFEVEQVL 442 (542)
T ss_pred ceEEEEecCCccccchhhcCCHHHHHHhh-cCC---cEeccceEEEcCCceEEEEecCCCEEEeCCEE--ECHHHHHHHH
Confidence 577644 58999999888887 456 99999999999999888887 56677777 6777777777
Q ss_pred HHhhhhCCceEEEEcCh
Q psy2842 266 LHCLVTSDANICVVEDD 282 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~~ 282 (486)
..+..+.++.++.++++
T Consensus 443 ~~~~~V~~~~v~~v~~~ 459 (542)
T PRK06155 443 LSHPAVAAAAVFPVPSE 459 (542)
T ss_pred HhCCCeeEEEEEeeccc
Confidence 77777777777766553
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-14 Score=151.75 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=119.0
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CC-CceeccccccccccccccCCC-CCCCcCccccccCCceEEEECCCCC-
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LD-IPICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPDEE- 197 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g-~~i~~~yG~TE~~~~~~~~~~-~~~~~~s~G~p~p~~~~~i~d~~~~- 197 (486)
+.+++++||.+++||++++++...++.+ ++ .++.+.||+||+++.+....+ ....++++|.|++|++++|+|++|.
T Consensus 466 ~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~ 545 (728)
T PLN03052 466 AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNP 545 (728)
T ss_pred ccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCC
Confidence 3466799999999999999999888776 55 589999999999865543332 2345789999999999999998775
Q ss_pred ------Cccceehh--------hhHhhHHHHHHHHHHcC-C--cccceEEEEeecCCchhhhhHH----HhHcCCeeeec
Q psy2842 198 ------GNGEICLK--------EYEANVRTVAKAFLKLG-L--ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGM 256 (486)
Q Consensus 198 ------~~gel~~~--------~y~~~~~~~a~~l~~~g-~--~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi 256 (486)
+.||+.++ +|+++ +.....|.... . +.+.++||++..+.++++.++| +++.||.. |
T Consensus 546 v~~g~~~~GEL~v~~~~~~~~~~~~~~-~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~r--I 622 (728)
T PLN03052 546 YPDDAPCTGELALFPLMFGASSTLLNA-DHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIK--V 622 (728)
T ss_pred CCCCCCceEEEEEeCCCCCCCccccCc-hhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEE--e
Confidence 14888864 34444 33444553211 1 2257999999999999999998 78899988 6
Q ss_pred CCCCCHHHHH-HhhhhCCceEEEEcCh
Q psy2842 257 YTTNSPEACL-HCLVTSDANICVVEDD 282 (486)
Q Consensus 257 ~~~~~~~~l~-~~~~~~~~~vvi~~~~ 282 (486)
++.+.+..+. .+..+.++.++.++++
T Consensus 623 ~~~EIE~~l~~~~p~V~eaaVvg~~d~ 649 (728)
T PLN03052 623 SSVEIERVCNAADESVLETAAIGVPPP 649 (728)
T ss_pred CHHHHHHHHHhcCCCcceEEEEeeecC
Confidence 7777777774 4566778888877764
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-14 Score=147.44 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=114.0
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCC-----------CCcCccccccCCceEEEEC
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKIVD 193 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~-----------~~~~s~G~p~p~~~~~i~d 193 (486)
+++++|.+++||+++++++.++|+++|+++++.||+||++...+...... ...+++|+|.++++++|+|
T Consensus 292 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d 371 (542)
T PRK06018 292 KLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD 371 (542)
T ss_pred CcccceEEEEcCCCCCHHHHHHHHHhCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC
Confidence 34789999999999999999999889999999999999987655432110 0236799999999999999
Q ss_pred CCCC-------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeec
Q psy2842 194 PDEE-------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGM 256 (486)
Q Consensus 194 ~~~~-------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi 256 (486)
+++. ..|++.++ +|++.. ...+..+| |.++||++..+.++++.+.| +++.+|.. +
T Consensus 372 ~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~---~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~--v 443 (542)
T PRK06018 372 DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDG---FFDTGDVATIDAYGYMRITDRSKDVIKSGGEW--I 443 (542)
T ss_pred CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCc---EEEcCCEEEEcCCccEEEEecCCCeEEECCEE--E
Confidence 8764 24788775 777632 22333344 89999999999998888777 66788887 6
Q ss_pred CCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 257 YTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
++.+.+..+..+..+.++.++..+++
T Consensus 444 ~~~eIE~~l~~~~~v~~~~v~~~~~~ 469 (542)
T PRK06018 444 SSIDLENLAVGHPKVAEAAVIGVYHP 469 (542)
T ss_pred CHHHHHHHHHhCCcceeEEEEeccCC
Confidence 77777777777777777777766554
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-13 Score=143.71 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=118.2
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCC-----CCCCcCccccccCCceEEEECCCC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAP-----DDFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~-----~~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
..+++++.+++||+++++++.+++.+ + ++.++++||+||+++.++.... ......++|.|.|+++++|+|+++
T Consensus 255 ~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~ 334 (502)
T TIGR01734 255 ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEG 334 (502)
T ss_pred ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCC
Confidence 34589999999999999999999887 6 8999999999998765443221 123446799999999999999876
Q ss_pred C-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCC
Q psy2842 197 E-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNS 261 (486)
Q Consensus 197 ~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~ 261 (486)
. +.|++.++ +|+++++.+.+.+....-..|+++||++..+.+ .+.+.| +++.+|.. ++|...
T Consensus 335 ~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~--v~~~~I 411 (502)
T TIGR01734 335 EPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYR--IELEDI 411 (502)
T ss_pred CCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEE--eCHHHH
Confidence 4 45788764 899998888877643322458999999999877 667777 66678888 677777
Q ss_pred HHHHHHhhhhCCceEEEEc
Q psy2842 262 PEACLHCLVTSDANICVVE 280 (486)
Q Consensus 262 ~~~l~~~~~~~~~~vvi~~ 280 (486)
|+.+..+..+.++.++.+.
T Consensus 412 E~~l~~~~~v~~~~vv~~~ 430 (502)
T TIGR01734 412 EFNLRQSSYIESAVVVPKY 430 (502)
T ss_pred HHHHHcCCCccEEEEEEEE
Confidence 7777777666666666543
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-13 Score=144.12 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=115.0
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCC--C-------C-CCC-cCccccccCCce-EEEE
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSA--P-------D-DFK-LDGVGRTIPGTQ-TKIV 192 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~--~-------~-~~~-~~s~G~p~p~~~-~~i~ 192 (486)
.+++++.+++||+++++++.++|.+.++++++.||+||+++.++... + . ... ..++|.|.++.+ ++|+
T Consensus 308 ~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~ 387 (567)
T PLN02479 308 PLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVV 387 (567)
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEE
Confidence 34789999999999999999999888999999999999865433221 0 0 011 246788888886 8888
Q ss_pred CCC-CC-------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeee
Q psy2842 193 DPD-EE-------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAA 254 (486)
Q Consensus 193 d~~-~~-------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~v 254 (486)
|.+ +. ..||++++ ||+++++.+++.+. +| |.++||++..+.++.+.+.| .++.+|..
T Consensus 388 d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~-~g---~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~- 462 (567)
T PLN02479 388 DTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA-NG---WFHSGDLGVKHPDGYIEIKDRSKDIIISGGEN- 462 (567)
T ss_pred cCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc-CC---ceecceeEEEcCCccEEEeccccceEEeCCEE-
Confidence 742 21 35888764 89999999888883 45 89999999999999888887 56677877
Q ss_pred ecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 255 GMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 255 pi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
++|.+.+..+..+....++.++...++
T Consensus 463 -v~~~eIE~~l~~~~~v~~~~v~~~~~~ 489 (567)
T PLN02479 463 -ISSLEVENVVYTHPAVLEASVVARPDE 489 (567)
T ss_pred -EcHHHHHHHHHhCcccceeeEEeccch
Confidence 677777777777777777766665543
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-13 Score=141.74 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=118.7
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCC-----CCCCcCccccccCCceEEEECCC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAP-----DDFKLDGVGRTIPGTQTKIVDPD 195 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~-----~~~~~~s~G~p~p~~~~~i~d~~ 195 (486)
..+++++|.+++||+++++++.+++.+ + +..+++.||+||++..++.... ......++|+|.++++++|+|++
T Consensus 256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~ 335 (503)
T PRK04813 256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEE 335 (503)
T ss_pred cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCC
Confidence 345689999999999999999999988 6 7899999999998765543221 12345689999999999999987
Q ss_pred CC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 196 EE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 196 ~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
+. +.||+.++ +|+++++.+...|....-.+|+++||++.. .++.+.+.| +++.+|.. +++..
T Consensus 336 ~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~--v~~~~ 412 (503)
T PRK04813 336 GTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYR--IELEE 412 (503)
T ss_pred CCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEE--eCHHH
Confidence 64 56777764 799999988887754222358999999999 788887777 56667776 67777
Q ss_pred CHHHHHHhhhhCCceEEEEc
Q psy2842 261 SPEACLHCLVTSDANICVVE 280 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vvi~~ 280 (486)
.++.+..+..+.++.++..+
T Consensus 413 iE~~l~~~~~v~~~~v~~~~ 432 (503)
T PRK04813 413 IEQNLRQSSYVESAVVVPYN 432 (503)
T ss_pred HHHHHHhCCCcceEEEEEee
Confidence 77777766666666665543
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-13 Score=142.88 Aligned_cols=152 Identities=20% Similarity=0.319 Sum_probs=113.0
Q ss_pred CCCCceeEEEecc-CCCCHHHHHHHHhCCCceeccccccccccccccCCCCC---CCcCcccccc-CCceEEEECCCCC-
Q psy2842 124 MGLDRCRVSLSGA-APISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD---FKLDGVGRTI-PGTQTKIVDPDEE- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gg-a~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~---~~~~s~G~p~-p~~~~~i~d~~~~- 197 (486)
.++++++.+.++| ++.+.++.+++...|+++++.||+||+++.++...... .+..++|.|. ++++++|+|+++.
T Consensus 291 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~ 370 (540)
T PRK06164 291 ADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGA 370 (540)
T ss_pred CCCcceeeeeeccCCcchHHHHHHHhhcCCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCc
Confidence 4457888876665 67777888888777999999999999987766554322 2345678875 8999999995432
Q ss_pred -----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 -----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 -----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.||++++ ||+++++.+++.|..+| |+++||++..+.++++.+.| .++.+|.. ++|.+.+
T Consensus 371 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~---~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~--i~p~eIE 445 (540)
T PRK06164 371 LLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDG---YFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFL--VNPAEIE 445 (540)
T ss_pred CCCCCCeeEEEEecccccccccCCchhhhhcccCCC---ceecCCeEEEcCCceEEEEeecCCeEEECCEE--cCHHHHH
Confidence 45888765 89999999999887777 89999999999998887777 55667776 5666666
Q ss_pred HHHHHhhhhCCceEEEEc
Q psy2842 263 EACLHCLVTSDANICVVE 280 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~ 280 (486)
+.+..+..+.++.++.+.
T Consensus 446 ~~l~~~~~v~~~~v~~~~ 463 (540)
T PRK06164 446 HALEALPGVAAAQVVGAT 463 (540)
T ss_pred HHHHhCCCceeEEEEecC
Confidence 666655555555555443
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-13 Score=151.13 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=135.2
Q ss_pred ceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHhh
Q psy2842 22 GRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYLE 100 (486)
Q Consensus 22 ~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (486)
.|+..+++.+++ ++|+++++|.+++.+.+.-
T Consensus 681 ~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~------------------------------------------------ 712 (994)
T PRK07868 681 LDPDRFVQEVRQYGVTVVSYTWAMLREVVDDP------------------------------------------------ 712 (994)
T ss_pred CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc------------------------------------------------
Confidence 366677777888 9999999999998876531
Q ss_pred hcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CC-CceeccccccccccccccCCCCCCCcC
Q psy2842 101 KNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LD-IPICEVFGMSECAGAHTVSAPDDFKLD 178 (486)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g-~~i~~~yG~TE~~~~~~~~~~~~~~~~ 178 (486)
.....+++++|.++ | +++++++.+.+.+ ++ ++++++||+||++...+ +. ...+++
T Consensus 713 -------------------~~~~~~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~-~~~~~~ 769 (994)
T PRK07868 713 -------------------AFVLHGNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV-SGAKIG 769 (994)
T ss_pred -------------------CCccCCCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeeccccccccc-cc-CCCCCc
Confidence 00112347899876 3 3499999999988 65 88999999999875433 22 234678
Q ss_pred ccccccCCc-eEEEE-----------CCCC-------CCccceehhh--hHhhHHHHH--HHHH-HcCCcccceEEEEee
Q psy2842 179 GVGRTIPGT-QTKIV-----------DPDE-------EGNGEICLKE--YEANVRTVA--KAFL-KLGLERYHSVCIIGF 234 (486)
Q Consensus 179 s~G~p~p~~-~~~i~-----------d~~~-------~~~gel~~~~--y~~~~~~~a--~~l~-~~g~~~~~~vg~~~~ 234 (486)
++|+|+|++ +++|. |++| ++.|||+.++ +. +++.++ ..|. .+| |++|||++.
T Consensus 770 svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~~-~p~~t~~~~~~~~~dg---w~~TGDlg~ 845 (994)
T PRK07868 770 SKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGPI-DPTASVKRGVFAPADT---WISTEYLFR 845 (994)
T ss_pred ccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCCC-ChhhhhHhcccccCCE---EEeccceEE
Confidence 999999998 67664 3333 1568888764 33 343322 2242 134 999999999
Q ss_pred cCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 235 NAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 235 ~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.+.++++.++| .++.||.. |+|.+.|..+..+..+.++.++..+++
T Consensus 846 ~d~dG~l~~~GR~dd~Ik~~G~~--I~p~EIE~~L~~hp~V~~aaVvg~~d~ 895 (994)
T PRK07868 846 RDDDGDYWLVDRRGSVIRTARGP--VYTEPVTDALGRIGGVDLAVTYGVEVG 895 (994)
T ss_pred EcCCCCEEEeccCCCEEEeCCce--EcHHHHHHHHhcCCCeeEEEEEeecCC
Confidence 99999999998 78887776 789999999999999999888887764
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.8e-13 Score=135.18 Aligned_cols=147 Identities=25% Similarity=0.318 Sum_probs=108.6
Q ss_pred CceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCC-CCcCccccccCCceEEEECCCCCCccceeh-
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPDEEGNGEICL- 204 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~-~~~~s~G~p~p~~~~~i~d~~~~~~gel~~- 204 (486)
+++|.+++||+++++++.++++..|+++++.||+||+++.++...... ....++|+|++++++++.+++..+.||+.+
T Consensus 219 ~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~ 298 (436)
T TIGR01923 219 ENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVK 298 (436)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCCCCceEEEEE
Confidence 689999999999999999999889999999999999987665443322 222359999999999994433335677765
Q ss_pred -----hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCce
Q psy2842 205 -----KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDAN 275 (486)
Q Consensus 205 -----~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~ 275 (486)
.+|+++.+.+...+ .+| |+++||++..+.++.+.+.| +++.+|.. +++...++.+..+....++.
T Consensus 299 ~~~~~~gy~~~~~~~~~~~-~~~---~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~--v~~~~iE~~l~~~~~v~~~~ 372 (436)
T TIGR01923 299 GANLMKGYLYQGELTPAFE-QQG---WFNTGDIGELDGEGFLYVLGRRDDLIISGGEN--IYPEEIETVLYQHPGIQEAV 372 (436)
T ss_pred CCccchhhCCChhhhhhhh-cCC---CeeccceEEEcCCCCEEEeccccCeEEeCCEe--eCHHHHHHHHHhCCCeeEEE
Confidence 48888766655443 345 89999999999988888877 56677766 56666666666555555554
Q ss_pred EEEE
Q psy2842 276 ICVV 279 (486)
Q Consensus 276 vvi~ 279 (486)
++..
T Consensus 373 v~~~ 376 (436)
T TIGR01923 373 VVPK 376 (436)
T ss_pred EeCC
Confidence 4443
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-12 Score=139.34 Aligned_cols=171 Identities=18% Similarity=0.262 Sum_probs=124.2
Q ss_pred CCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-C---CC---ceeccccccccccccccCCCCC---
Q psy2842 105 EPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-L---DI---PICEVFGMSECAGAHTVSAPDD--- 174 (486)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~---g~---~i~~~yG~TE~~~~~~~~~~~~--- 174 (486)
+++.+.++............+++++|.+++||+++++++.+.|.+ + |+ .++++||+||+++.++......
T Consensus 277 ~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~ 356 (579)
T PRK09192 277 PPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIV 356 (579)
T ss_pred CcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCce
Confidence 344444443332222234467899999999999999999998877 4 32 4999999999987665443211
Q ss_pred -------------------------CCcCccccccCCceEEEECCCCC-----Cccceeh------hhhHhhHHHHHHHH
Q psy2842 175 -------------------------FKLDGVGRTIPGTQTKIVDPDEE-----GNGEICL------KEYEANVRTVAKAF 218 (486)
Q Consensus 175 -------------------------~~~~s~G~p~p~~~~~i~d~~~~-----~~gel~~------~~y~~~~~~~a~~l 218 (486)
...+++|+|+|+++++|+|+++. +.||+.+ ++|+++ ..+++.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~ 435 (579)
T PRK09192 357 VEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVL 435 (579)
T ss_pred EEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccc
Confidence 01357999999999999997764 4577766 489998 6666666
Q ss_pred HHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhC--CceEEEEcCh
Q psy2842 219 LKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTS--DANICVVEDD 282 (486)
Q Consensus 219 ~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~--~~~vvi~~~~ 282 (486)
..+| |.++||++.. .++.+.++| +++.+|.. |+|.+.|+.++.+..+. ++.++.+.++
T Consensus 436 ~~dg---w~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~--v~p~eIE~~l~~~p~V~~~~~~v~~~~~~ 499 (579)
T PRK09192 436 AADG---WLDTGDLGYL-LDGYLYITGRAKDLIIINGRN--IWPQDIEWIAEQEPELRSGDAAAFSIAQE 499 (579)
T ss_pred cCCc---eeeccceeeE-ECCEEEEEeccccEEEECCCc--cCHHHHHHHHHhcCCccCCcEEEEEeccC
Confidence 5666 8999999998 888888888 67778887 68888888888877666 5555555543
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-12 Score=136.37 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=110.5
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEE-----------EECC
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTK-----------IVDP 194 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~-----------i~d~ 194 (486)
.+++.+ + |++++++..+.|.+ +|+++++.||+||++..++... ..+.+++|+|+|++++. ++|+
T Consensus 265 ~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~ 340 (540)
T PRK13388 265 NPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFDA 340 (540)
T ss_pred cceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceeccC
Confidence 456643 3 55667777777776 8999999999999986654322 34578999999997753 3444
Q ss_pred CCC------Cccceehh-------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecC
Q psy2842 195 DEE------GNGEICLK-------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMY 257 (486)
Q Consensus 195 ~~~------~~gel~~~-------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~ 257 (486)
+|. ..||+.++ +|+++++.+++.+ .+| |+++||++..+.++.+.++| +++.+|.. ++
T Consensus 341 ~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g---~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~--v~ 414 (540)
T PRK13388 341 HGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHG---MYWSGDLAYRDADGWIYFAGRTADWMRVDGEN--LS 414 (540)
T ss_pred ccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcC---ceeccceEEEcCCCcEEEeccCCceEEECCEE--eC
Confidence 332 35777765 9999999998888 356 89999999999999888887 66778887 68
Q ss_pred CCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 258 TTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|.+.|..+..+..+.++.++..+++
T Consensus 415 p~eIE~~l~~~~~V~~~~v~g~~~~ 439 (540)
T PRK13388 415 AAPIERILLRHPAINRVAVYAVPDE 439 (540)
T ss_pred HHHHHHHHHhCCCceEEEEEEccCC
Confidence 8888888877777778877777654
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=136.28 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=113.0
Q ss_pred CceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCC-CC-----C--
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-EE-----G-- 198 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~-~~-----~-- 198 (486)
+++|. ++||+++++.+.++.+.+|+++++.||+||++..++... ....+++|.|+++ ++++|.+ +. +
T Consensus 267 ~~lr~-~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~ 341 (529)
T PRK07867 267 NPLRI-VYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDPDTGTECPPAEDA 341 (529)
T ss_pred cceEE-EecCCCChHHHHHHHHHhCCcEEEeecccccccccccCC--CCCCCCcCCCCCC--EEEEECCCCCCCCCCccc
Confidence 56774 568889988775555558999999999999876554322 2356789999999 6777643 21 2
Q ss_pred ----------ccceeh-------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecC
Q psy2842 199 ----------NGEICL-------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMY 257 (486)
Q Consensus 199 ----------~gel~~-------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~ 257 (486)
.||+.. .+|+++++.++..+. +| |.++||++..+.++++.++| +++.+|.. ++
T Consensus 342 ~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~-~g---~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~--v~ 415 (529)
T PRK07867 342 DGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR-GG---VYWSGDLAYRDADGYAYFAGRLGDWMRVDGEN--LG 415 (529)
T ss_pred cccccccCCcceEEEEecCCcccccccCChHhhhhhhc-CC---eEeeccEEEEeCCCcEEEeccccCeEEECCEE--eC
Confidence 588876 589999999888773 56 99999999999999888888 66778887 78
Q ss_pred CCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 258 TTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|.+.|..+..+..+.++.++..+++
T Consensus 416 p~eIE~~l~~~p~V~~~~V~g~~~~ 440 (529)
T PRK07867 416 TAPIERILLRYPDATEVAVYAVPDP 440 (529)
T ss_pred HHHHHHHHHhCCCeeEEEEEeccCC
Confidence 8888888888888888888887765
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=9e-13 Score=133.86 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=104.2
Q ss_pred CceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCCccceehhh
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKE 206 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~~gel~~~~ 206 (486)
.+++.+++||+++++++.+++++.+.++++.||+||+++... . ......+++|+|+|++++++.++++ ..|++.++.
T Consensus 212 ~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~-~-~~~~~~~~~G~p~~~~~~~~~~~~~-~~gel~v~~ 288 (414)
T PRK08308 212 FQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSI-C-PDMKSHLDLGNPLPHVSVSAGSDEN-APEEIVVKM 288 (414)
T ss_pred ccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeee-c-CCCCCCCccCccCCCeEEEEecCCC-CCceEEEEc
Confidence 367889999999999999999987789999999999875432 2 2234568899999999999986433 468888753
Q ss_pred hHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 207 y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.+ .|.+|||+++.+.++.+.++| .++.+|.. ++|.+.|..+..+....++.++..+++
T Consensus 289 -------------~~---~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~--v~p~eIE~~l~~~~~v~~a~v~~~~~~ 350 (414)
T PRK08308 289 -------------GD---KEIFTKDLGYKSERGTLHFMGRMDDVINVSGLN--VYPIEVEDVMLRLPGVQEAVVYRGKDP 350 (414)
T ss_pred -------------CC---ceEECCceEEECCCccEEEecccCCeEEECCEE--ECHHHHHHHHHhCCCeeEEEEEeccCC
Confidence 12 389999999999998888887 67788887 677777777777766666666655543
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-12 Score=133.94 Aligned_cols=147 Identities=21% Similarity=0.207 Sum_probs=112.1
Q ss_pred CceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCCccceehhh
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKE 206 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~~gel~~~~ 206 (486)
.++|.+++||+++++++.+++.++|++++++||+||++...+..... ...++|+|++++++++.+.+-...|...+.+
T Consensus 240 ~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~--~~~~~G~~~~~~~~~i~~gel~v~g~~~~~g 317 (458)
T PRK09029 240 LSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKRAD--GLAGVGSPLPGREVKLVDGEIWLRGASLALG 317 (458)
T ss_pred CcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccCCC--CCCCCCCCCCCCEEEEeCCEEEEecCceeee
Confidence 57999999999999999999998999999999999998665543322 2357999999999999862100223334458
Q ss_pred hHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 207 y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|+++++.+.... .+| |.+|||++..+ ++.+.+.| +++.+|.. ++|.+.|+.+..+..+.++.++..+++
T Consensus 318 Y~~~~~~~~~~~-~~~---~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~--v~p~eiE~~l~~~~~v~~~~v~~~~~~ 390 (458)
T PRK09029 318 YWRQGQLVPLVN-DEG---WFATRDRGEWQ-NGELTILGRLDNLFFSGGEG--IQPEEIERVINQHPLVQQVFVVPVADA 390 (458)
T ss_pred eecCcccccccc-CCC---ccCCCCcEEEe-CCEEEEecccccceeeCCEE--eCHHHHHHHHhcCCCcceEEEEccCCc
Confidence 998877654322 234 99999999998 88888887 67788887 688888888888777777777766554
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-12 Score=134.49 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=109.9
Q ss_pred CceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC-----------CCCcCccccccCC-ceEEEECC
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD-----------DFKLDGVGRTIPG-TQTKIVDP 194 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~-----------~~~~~s~G~p~p~-~~~~i~d~ 194 (486)
.+.+.+++||+++++++.++++++++++++.||+||+++.++.+... ....+++|.+.+. .+++++|+
T Consensus 296 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~ 375 (545)
T PRK08162 296 DHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDP 375 (545)
T ss_pred ccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcC
Confidence 45566789999999999999988899999999999987655443211 0123567777663 45788885
Q ss_pred CC-C-------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeec
Q psy2842 195 DE-E-------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGM 256 (486)
Q Consensus 195 ~~-~-------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi 256 (486)
++ . ..||+.++ +|+++++.++..+. +| |.++||++..+.++++.+.| .++.+|.. +
T Consensus 376 ~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g---~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~--v 449 (545)
T PRK08162 376 DTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA-GG---WFHTGDLAVLHPDGYIKIKDRSKDIIISGGEN--I 449 (545)
T ss_pred CCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhh-CC---CcccCceEEEcCCccEEEEecccceEEeCCEE--E
Confidence 32 2 24787765 89999999988883 45 89999999999999888887 56677777 5
Q ss_pred CCCCCHHHHHHhhhhCCceEEEEcC
Q psy2842 257 YTTNSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
+|.+.+..+..+..+.++.++..++
T Consensus 450 ~~~eIE~~l~~~~~v~~~~vv~~~~ 474 (545)
T PRK08162 450 SSIEVEDVLYRHPAVLVAAVVAKPD 474 (545)
T ss_pred CHHHHHHHHHhCCcccEEEEEeeec
Confidence 7777777777666666666655544
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-12 Score=135.07 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=111.6
Q ss_pred cCCCCceeEEEe--ccCCCCHHHHHHHHh-CCCceec-cccccccccccccCCC---C----CCCcCccccccCCceEEE
Q psy2842 123 AMGLDRCRVSLS--GAAPISTELKRYFLS-LDIPICE-VFGMSECAGAHTVSAP---D----DFKLDGVGRTIPGTQTKI 191 (486)
Q Consensus 123 ~~~l~~lr~~~~--gga~l~~~~~~~~~~-~g~~i~~-~yG~TE~~~~~~~~~~---~----~~~~~s~G~p~p~~~~~i 191 (486)
..++++++.+.. +++++++++.++|++ +|..+++ .||+||+++.++.... . ..+++++|+|+||+++++
T Consensus 321 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v 400 (567)
T PRK06178 321 EYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKI 400 (567)
T ss_pred CCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEE
Confidence 345567777644 458999999999998 7877775 7999998765544321 1 235678999999999999
Q ss_pred ECCC-CC-----Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeee
Q psy2842 192 VDPD-EE-----GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAG 255 (486)
Q Consensus 192 ~d~~-~~-----~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vp 255 (486)
+|++ +. +.|++.+ .+|+++++.++..+ .+| |.++||++..+.++.+.++| .++.+|..
T Consensus 401 ~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg---~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~-- 474 (567)
T PRK06178 401 CDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDG---WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMS-- 474 (567)
T ss_pred EcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCC---ceeecceEEEecCCeEEEEecccccEEECCEE--
Confidence 9943 32 4678776 58999998888777 456 99999999998888887777 56677776
Q ss_pred cCCCCCHHHHHHhhhhCCceEEEEcC
Q psy2842 256 MYTTNSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 256 i~~~~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
++|.+.++.+..+....++.++...+
T Consensus 475 i~~~eiE~~l~~~~~v~~~~v~~~~~ 500 (567)
T PRK06178 475 VFPSEVEALLGQHPAVLGSAVVGRPD 500 (567)
T ss_pred ECHHHHHHHHHhCCCeeEEEEEcCcC
Confidence 56666666666655555555554443
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=129.39 Aligned_cols=155 Identities=23% Similarity=0.214 Sum_probs=115.4
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCCCCcCccc--cccCCceEEEECCCCC-
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDDFKLDGVG--RTIPGTQTKIVDPDEE- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G--~p~p~~~~~i~d~~~~- 197 (486)
..+++++|.+++||+++++++.+++++ + +.++++.||+||++......... .....| ++.++.+++++|+++.
T Consensus 292 ~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~g~~~~~~~~~~~i~~~~~~~ 369 (533)
T PRK07798 292 PYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK--GAVHTGGPRFTIGPRTVVLDEDGNP 369 (533)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC--CCccCCCCccCCCceEEEECCCCCC
Confidence 345689999999999999999999998 6 88999999999986544332211 122344 8889999999998775
Q ss_pred ----Cc--ccee-----hhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 ----GN--GEIC-----LKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 ----~~--gel~-----~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
.. |++. ..+|+++++.+++.|...+-..|.++||++..+.++.+.+.| +++.+|.. +++.+.+
T Consensus 370 ~~~g~~~~g~l~~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~--v~~~eIE 447 (533)
T PRK07798 370 VEPGSGEIGWIARRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEK--VFPEEVE 447 (533)
T ss_pred CCCCCCCeeEEEeecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEE--eCHHHHH
Confidence 12 4443 358999999998888653324588999999999999888887 66778876 5677777
Q ss_pred HHHHHhhhhCCceEEEEcC
Q psy2842 263 EACLHCLVTSDANICVVED 281 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~ 281 (486)
..+..+..+.++.++..++
T Consensus 448 ~~l~~~~~v~~~~v~~~~~ 466 (533)
T PRK07798 448 EALKAHPDVADALVVGVPD 466 (533)
T ss_pred HHHHhCccceeEEEEeccC
Confidence 7766666666665555544
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-11 Score=128.71 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=110.0
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C---C---CceeccccccccccccccCCCCCC--------------------
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L---D---IPICEVFGMSECAGAHTVSAPDDF-------------------- 175 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~---g---~~i~~~yG~TE~~~~~~~~~~~~~-------------------- 175 (486)
.++++++|.+++||+++++++.++|.+ + | ..++++||+||++..+........
T Consensus 284 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 363 (578)
T PRK05850 284 GLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCE 363 (578)
T ss_pred CcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecC
Confidence 456789999999999999999998876 4 3 369999999998765543321110
Q ss_pred -----CcCccccccCCceEEEECCCCC------Cccceehh------hhHhhHHHHHHHHHHc------C--CcccceEE
Q psy2842 176 -----KLDGVGRTIPGTQTKIVDPDEE------GNGEICLK------EYEANVRTVAKAFLKL------G--LERYHSVC 230 (486)
Q Consensus 176 -----~~~s~G~p~p~~~~~i~d~~~~------~~gel~~~------~y~~~~~~~a~~l~~~------g--~~~~~~vg 230 (486)
...++|+|. +.+++++|+++. +.||++++ ||+++++.+++.|... | -..|.+||
T Consensus 364 ~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TG 442 (578)
T PRK05850 364 TGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTG 442 (578)
T ss_pred CCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeecc
Confidence 012345554 578999986532 46788764 8999999999988521 1 12399999
Q ss_pred EEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcC
Q psy2842 231 IIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 231 ~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
|++..+ ++++.++| +++.+|.. |+|.+.|..+..+.. ..+.++.+++
T Consensus 443 Dl~~~~-~G~l~~~GR~~d~i~~~G~~--i~p~eIE~~l~~~~~-~~~~v~~v~~ 493 (578)
T PRK05850 443 DLGFIS-EGELFIVGRIKDLLIVDGRN--HYPDDIEATIQEITG-GRVAAISVPD 493 (578)
T ss_pred ceeeEE-CCEEEEEcccccEEEECCee--cCHHHHHHHHHHhcC-CcEEEEEecC
Confidence 999987 78888888 67788888 677777777776654 3455555543
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=116.32 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=69.5
Q ss_pred CceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCC-CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-C
Q psy2842 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-N 418 (486)
Q Consensus 341 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~ 418 (486)
+..++++|||||||.||||+++|+++...+......++.. .+.+++++.+|++|++|+.+.++.++..|+++++... +
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 4578999999999999999999999998887777776653 2346899999999999998888999999999988754 3
Q ss_pred hHHHHHHH
Q psy2842 419 ALKVYKAT 426 (486)
Q Consensus 419 ~~~~~~~i 426 (486)
+...++.+
T Consensus 175 ~~~~l~~i 182 (386)
T TIGR02372 175 ASGIMRHA 182 (386)
T ss_pred hHHHHHhh
Confidence 33344333
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-11 Score=127.58 Aligned_cols=152 Identities=26% Similarity=0.330 Sum_probs=113.1
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh----CCC---ceeccccccccccccccCCCC----------------------
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS----LDI---PICEVFGMSECAGAHTVSAPD---------------------- 173 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~----~g~---~i~~~yG~TE~~~~~~~~~~~---------------------- 173 (486)
.++++++|.+++||+++++++.+++.+ +|. .+++.||+||++..++.....
T Consensus 272 ~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (545)
T PRK07768 272 AFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPA 351 (545)
T ss_pred CCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceecc
Confidence 467889999999999999999998875 455 499999999998765443221
Q ss_pred ----CCCcCccccccCCceEEEECCCCC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCc
Q psy2842 174 ----DFKLDGVGRTIPGTQTKIVDPDEE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPE 238 (486)
Q Consensus 174 ----~~~~~s~G~p~p~~~~~i~d~~~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~ 238 (486)
...++++|+|+|+++++++|+++. +.||+.++ +|++..... .....+| |.++||++..+.+
T Consensus 352 ~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~~~g---~~~TGDl~~~~~~ 427 (545)
T PRK07768 352 TKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFI-PAQDADG---WLDTGDLGYLTEE 427 (545)
T ss_pred CCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCc-ccccCCC---eeeccceEEEecC
Confidence 123568999999999999997765 45787764 677643222 2222234 8999999999988
Q ss_pred hhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEc
Q psy2842 239 WFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 280 (486)
Q Consensus 239 ~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~ 280 (486)
+.+.++| +++.+|.. +++.+.|..+..+..+.++.++.+.
T Consensus 428 g~l~~~GR~~d~i~~~G~~--v~~~eiE~~l~~~~~v~~~~vv~~~ 471 (545)
T PRK07768 428 GEVVVCGRVKDVIIMAGRN--IYPTDIERAAARVEGVRPGNAVAVR 471 (545)
T ss_pred CEEEEEccccceEEECCEe--cCHHHHHHHHHhCcccccceEEEEE
Confidence 8888887 66778877 6788778777777777766665543
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-11 Score=120.26 Aligned_cols=139 Identities=22% Similarity=0.296 Sum_probs=106.5
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC--Cccc
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE--GNGE 201 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~--~~ge 201 (486)
..++++|.+++||+++++++.+++.++++++++.||+||+++.+. ..|+|+|++++++.| |. ..|.
T Consensus 148 ~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~--Gei~v~g~ 215 (358)
T PRK07824 148 AALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED--GRIALGGP 215 (358)
T ss_pred CCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC--CEEEEecC
Confidence 456899999999999999999999889999999999999875442 368999999999943 22 2344
Q ss_pred eehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 202 ICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 202 l~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
....+|+++++.. .+...| |+++||++.. .++.+.+.| +++.+|.. ++|.+.+..+..+..+.++.++
T Consensus 216 ~~~~gY~~~~~~~--~~~~~g---~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~--v~p~eIE~~l~~~~~V~~~~vv 287 (358)
T PRK07824 216 TLAKGYRNPVDPD--PFAEPG---WFRTDDLGAL-DDGVLTVLGRADDAISTGGLT--VLPQVVEAALATHPAVADCAVF 287 (358)
T ss_pred ccccccCCCcccc--cccCCC---ceecccEEEE-eCCEEEEEeccCCeEEECCEE--ECHHHHHHHHHhCCCcceEEEE
Confidence 4456888877632 343445 9999999998 677777777 67788887 6787777777777777777776
Q ss_pred EEcCh
Q psy2842 278 VVEDD 282 (486)
Q Consensus 278 i~~~~ 282 (486)
..+++
T Consensus 288 ~~~~~ 292 (358)
T PRK07824 288 GLPDD 292 (358)
T ss_pred ecCCC
Confidence 66554
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-11 Score=125.00 Aligned_cols=148 Identities=16% Similarity=0.054 Sum_probs=105.8
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCC-ceeccccccccccccccCCCCCCCcCccccccC----Cce---------EEE
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDI-PICEVFGMSECAGAHTVSAPDDFKLDGVGRTIP----GTQ---------TKI 191 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~-~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p----~~~---------~~i 191 (486)
.++|.+ +|+++++++.+.|.+ ++. .+++.||+||++...+ +. ....+++|++.+ +.. ..+
T Consensus 314 ~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~-~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i 388 (600)
T PRK08279 314 HRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFI-NV--FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPV 388 (600)
T ss_pred cceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeec-cc--CCCCcccccccccccccceeeeeccCcCcee
Confidence 567764 477799999999988 776 4999999999875432 21 234567887666 332 223
Q ss_pred ECCCCC-------Ccccee--------hhhhHhhHHHHHHHHHHcC---CcccceEEEEeecCCchhhhhHH----HhHc
Q psy2842 192 VDPDEE-------GNGEIC--------LKEYEANVRTVAKAFLKLG---LERYHSVCIIGFNAPEWFYSDLG----AIYA 249 (486)
Q Consensus 192 ~d~~~~-------~~gel~--------~~~y~~~~~~~a~~l~~~g---~~~~~~vg~~~~~~~~~~~~~~g----~~~~ 249 (486)
.+.++. +.|++. +.|| ++++.+.+.+..+. -..|++|||++..+.++.+.++| .++.
T Consensus 389 ~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~ 467 (600)
T PRK08279 389 RDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW 467 (600)
T ss_pred eCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEE
Confidence 332221 356664 3488 78888877764421 13589999999999999998888 6778
Q ss_pred CCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 250 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 250 gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+|.. |+|.+.|+.+..+..+.++.++.++++
T Consensus 468 ~G~~--i~p~eIE~~l~~~p~V~~a~v~gv~~~ 498 (600)
T PRK08279 468 KGEN--VATTEVENALSGFPGVEEAVVYGVEVP 498 (600)
T ss_pred CCcc--cCHHHHHHHHhcCCCcceEEEEEeecC
Confidence 8888 789999999988888888888877643
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=101.90 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=60.2
Q ss_pred CCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEE
Q psy2842 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414 (486)
Q Consensus 338 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~ 414 (486)
..++++++++|||||||.||||+++|+++..........+ ...++++..+|++|.+|+. .++.++..|+++++
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~ 104 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVE 104 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHH-HHHHHHHcCCeEEe
Confidence 3468899999999999999999999999988776655443 3457889999999999974 46778888988877
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.4e-10 Score=112.01 Aligned_cols=130 Identities=19% Similarity=0.270 Sum_probs=89.1
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccc-cccCCCCCCCcCcccccc--CCceEEEECC-CCC----
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGA-HTVSAPDDFKLDGVGRTI--PGTQTKIVDP-DEE---- 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~-~~~~~~~~~~~~s~G~p~--p~~~~~i~d~-~~~---- 197 (486)
.++|.+++||+++++++.+.+++ +|+++++.||+||+++. +..... . ...|.++ +...+.|+|+ ++.
T Consensus 195 ~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~-~---~~~g~~~~~~~~~~eivd~~~g~~v~~ 270 (422)
T TIGR02155 195 TSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECV-E---TQDGLHIWEDHFYPEIIDPHTGEVLPD 270 (422)
T ss_pred CceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeeccc-c---cCCCceEecCeeEEEEECCCCCCCCCC
Confidence 58999999999999999999988 89999999999998532 221111 1 1223344 3567789985 442
Q ss_pred -CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCc-h-----hhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPE-W-----FYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~-~-----~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.|++.+.++.+ ..+ ..+ ++++||++..+.+ + +..+.| +++.+|.. |+|.+.+..+.
T Consensus 271 Ge~Gelvvt~~~~------~~~-p~~---ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~--v~p~eie~~l~ 338 (422)
T TIGR02155 271 GEEGELVFTTLTK------EAL-PVI---RYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVN--VFPTQLEEVIL 338 (422)
T ss_pred CCeeEEEEecCCc------ccc-cee---eEEcCcEEEEECCCCCcccccccccCccCCeEEECCEE--ECHHHHHHHHH
Confidence 569999887532 222 223 7899998876544 2 344555 67777777 67777777777
Q ss_pred HhhhhC
Q psy2842 267 HCLVTS 272 (486)
Q Consensus 267 ~~~~~~ 272 (486)
.+..+.
T Consensus 339 ~~~~v~ 344 (422)
T TIGR02155 339 KMDELS 344 (422)
T ss_pred hCcCcC
Confidence 666655
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-09 Score=106.99 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=88.1
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHhCCC-ceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCCcccee
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLSLDI-PICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEIC 203 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~~g~-~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~~gel~ 203 (486)
++++++. ++||+++++++.+.+++++. .++++||+||++++.+... ++..|+|+|+.++++ + ++...
T Consensus 204 ~l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~~~~-~-~~~~~---- 271 (386)
T TIGR02372 204 RLPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLACFA-D-TLSSA---- 271 (386)
T ss_pred CCCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccccccC-----CCCCcccCCCccccC-C-CccCC----
Confidence 3567775 68899999999999988764 6999999999987654321 345688999887754 2 11100
Q ss_pred hhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceE
Q psy2842 204 LKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANI 276 (486)
Q Consensus 204 ~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~v 276 (486)
|...+.++||++..+.++.+.++| +++.+|.. ++|.+.|+.+..+..+.++.+
T Consensus 272 ------------------g~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~--V~p~eIE~~l~~~p~V~~~~v 328 (386)
T TIGR02372 272 ------------------GLARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVN--VSPGHVRDILERNPRVRAAAV 328 (386)
T ss_pred ------------------CccceeecCceEEEcCCCcEEEecccCCEEEECCEE--EcHHHHHHHHHcCCCceEEEE
Confidence 222246789999999999998888 78889987 688888887777776666544
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=93.86 Aligned_cols=144 Identities=11% Similarity=0.047 Sum_probs=83.3
Q ss_pred CCCceEEEEcCCCCCCCCceeEechHHHHHHHHHH---HHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEc
Q psy2842 339 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI---IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 415 (486)
Q Consensus 339 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~ 415 (486)
+.++++.+++||||||.||+|.++|.++....... ...++. .++|++++..+..+..+.....+.++..|++++..
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGG-RPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCC-CCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 35678889999999999999999999987654433 233466 56788887766554444434456678889998876
Q ss_pred CC-ChHHHHHHHHHH------HhhhhHHHHhhhcccccccc--cccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 416 DK-NALKVYKATQAA------IDRANLKSISNAQKIQKFEF--LPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 416 ~~-~~~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l--~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
+. +....++.+.+. ..+..+..|.....-..+.. ......+.+|+..+. . -|..+.+.|...+-++|+
T Consensus 152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~-~-~~~~i~~~~g~~v~~~YG 228 (422)
T TIGR02155 152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTN-A-MRKEIEARLGMKATDIYG 228 (422)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCH-H-HHHHHHHHhCCceEeccc
Confidence 54 333444444331 01122233333221111111 122333455554443 2 334577777666666665
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-06 Score=87.26 Aligned_cols=230 Identities=9% Similarity=0.010 Sum_probs=153.4
Q ss_pred CCCCCccceehhhhHhhHHHHHHHHHHc-CCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCC------HHHHH
Q psy2842 194 PDEEGNGEICLKEYEANVRTVAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS------PEACL 266 (486)
Q Consensus 194 ~~~~~~gel~~~~y~~~~~~~a~~l~~~-g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~------~~~l~ 266 (486)
..|.+.-++||+++.+++++.++.+.+. .++.|++|.++.+++.|++..++||+..|.+.+|+-|... -..+.
T Consensus 794 ~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~ 873 (1363)
T KOG3628|consen 794 ARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFR 873 (1363)
T ss_pred cCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHH
Confidence 3344677899999999999999999765 4789999999999999999999999999999999988654 34556
Q ss_pred HhhhhCCceEEEEcChhHHHHHHHHhh-----cCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCC
Q psy2842 267 HCLVTSDANICVVEDDKQLEKILKVKA-----QCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATN 341 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~~~~~~~~~~~~-----~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (486)
.+++...+.+|.++.... .+..-.+ ....+..++...+-. . +|......-. .............+
T Consensus 874 ~ii~~~kv~ailv~~~v~--~lLrsr~~s~~~~~s~~p~i~~~~~~~---~--t~~k~~~~~~---k~~~~~~~g~~~k~ 943 (1363)
T KOG3628|consen 874 MIIKVYKVAAILVDQKVL--KLLRSREASAHVDQSAIPLILVLPKLP---E--TIRKRKKNIK---KLNTPTPPGLNNKE 943 (1363)
T ss_pred HHHHHhhhheEEecHHHH--HHHhhhhHHHHhhhhcchhhhcccccc---h--hhhhhhhhhh---ccCCCCCccccCCC
Confidence 677888999999987521 1111000 000011111111100 0 0111111000 00000001122457
Q ss_pred ceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC-hH
Q psy2842 342 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN-AL 420 (486)
Q Consensus 342 ~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~-~~ 420 (486)
.+|++-|.--++|.--|+..+|.++.+.+......+.+ ....-++...+.+...|+...++...+.|.+.++..+. ..
T Consensus 944 ~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l-~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~ 1022 (1363)
T KOG3628|consen 944 TPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQL-YKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLE 1022 (1363)
T ss_pred ceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHcc-ccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhh
Confidence 78999998889999999999999999999988888877 45555667777777888888889999999998887662 22
Q ss_pred HHHHHHHHHHhhhh
Q psy2842 421 KVYKATQAAIDRAN 434 (486)
Q Consensus 421 ~~~~~i~~~i~~~~ 434 (486)
.....+.+.+..++
T Consensus 1023 nnpsLll~~i~~~k 1036 (1363)
T KOG3628|consen 1023 NNPSLLLQIISQYK 1036 (1363)
T ss_pred cCHHHHHHHHhccc
Confidence 33334444444444
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.8e-07 Score=91.48 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=59.5
Q ss_pred CCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHH---ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEc
Q psy2842 339 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 415 (486)
Q Consensus 339 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~ 415 (486)
+.++++.+++||||||.||+|.++|.++.......... .++ .++|+++...|..+..+.....++++..|++++..
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~-~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGF-TAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 45678899999999999999999999988766554433 366 67789998888888766544556678889987654
Q ss_pred C
Q psy2842 416 D 416 (486)
Q Consensus 416 ~ 416 (486)
.
T Consensus 163 ~ 163 (445)
T TIGR03335 163 G 163 (445)
T ss_pred C
Confidence 4
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=98.23 E-value=6e-07 Score=91.86 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=58.7
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCcccccc--CCceEEEECCCCC------
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTI--PGTQTKIVDPDEE------ 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~--p~~~~~i~d~~~~------ 197 (486)
.++|.+++||+++++++.+++++ +|+++++.||+||++.. ..+. ...|..+ +.+.+.|+|+++.
T Consensus 204 ~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~------~~~g~h~~~d~~~vEIvDp~~~~~vp~G 276 (445)
T TIGR03335 204 SSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQ------AVAGLHVPEDLVHLDVYDPRHQRFLPDG 276 (445)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEec------CCCCccccCCceEEEEEcCCCCCCCcCC
Confidence 68999999999999999999887 79999999999998522 2111 1224444 3467899998754
Q ss_pred CccceehhhhHhh
Q psy2842 198 GNGEICLKEYEAN 210 (486)
Q Consensus 198 ~~gel~~~~y~~~ 210 (486)
+.||+.+..+.+.
T Consensus 277 e~GELvvT~L~~~ 289 (445)
T TIGR03335 277 ECGRIVLTTLLKP 289 (445)
T ss_pred CceEEEEEecCCC
Confidence 5699999888764
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-06 Score=92.03 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=117.0
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCC----HHHHHHhhhhC-C
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS----PEACLHCLVTS-D 273 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~----~~~l~~~~~~~-~ 273 (486)
.++.+|+.....+..++..+...|...+..+++++....++.+..++.++.|...+|++|.++ .+.+..+.... .
T Consensus 67 i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s 146 (1032)
T KOG1178|consen 67 IDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTS 146 (1032)
T ss_pred ccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhhee
Confidence 467788877777788899998889999999999999999999999999999999999999999 22221111100 0
Q ss_pred ceEEEEcChhHHHHHHHH-hhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCC
Q psy2842 274 ANICVVEDDKQLEKILKV-KAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGT 352 (486)
Q Consensus 274 ~~vvi~~~~~~~~~~~~~-~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGT 352 (486)
...-+... .+.+... .+..+... +. .....+..+... .. .+.......+..+++.||||+
T Consensus 147 ~~~~i~~~---l~i~~~~~~~~~~~~s-v~--------~~~~~f~~~~~~---~~----~r~~~~~~~ds~~~l~~tSgs 207 (1032)
T KOG1178|consen 147 VELEIVRR---LNIIDILLNSLFPKLS-VE--------TIADSFQMVLHN---ED----TREIRVGGNDSTALLSFTSGS 207 (1032)
T ss_pred ccceehhh---hhhHHHHhhccccccc-hh--------hccchhhhhhcc---CC----CcceeeecccccceEeecccc
Confidence 00111110 0000000 00111100 00 000011111000 00 011123346678999999999
Q ss_pred CCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHH-HHHHHHHHhCcEEEEcCC
Q psy2842 353 EGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT-VDIYSVMTVAATLWFADK 417 (486)
Q Consensus 353 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~-~~~~~~l~~G~tv~~~~~ 417 (486)
||.||+|.-+|..+.+...+....+.. +..+.. ...+.--....+ ..+.+.|..|..++.+..
T Consensus 208 ~G~pk~v~~~~~sl~~~fdw~~~~f~~-t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~ 271 (1032)
T KOG1178|consen 208 TGVPKGVAGTHFSLANAFDWMFTTFPP-TGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPTA 271 (1032)
T ss_pred cccccccchhHHHHHhhhhhccccCCc-Cccchh-hhhheeecccchHHHHhhHhhcCceeecccc
Confidence 999999999999999988888877776 455543 332222112222 233455666766666544
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.6e-06 Score=90.62 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=92.2
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-C--CCceeccccccccccccccCCCCCCC--cCccccccCCceEEEECCCCC----
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-L--DIPICEVFGMSECAGAHTVSAPDDFK--LDGVGRTIPGTQTKIVDPDEE---- 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~--g~~i~~~yG~TE~~~~~~~~~~~~~~--~~s~G~p~p~~~~~i~d~~~~---- 197 (486)
..+|.+++||++++.++.+.+.. . ...+.+.||.||++...+........ .-.+|+|+++..+.|.|....
T Consensus 485 ~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~ 564 (642)
T COG1020 485 ERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPL 564 (642)
T ss_pred ccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCC
Confidence 45999999999999999998876 3 46899999999965544433322222 357999999999999995443
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGA 246 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~ 246 (486)
..||+.+. +|+++++.++..|..+ ..+++||++....++.+-++|.
T Consensus 565 gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~---~~y~tgD~~r~~~dg~~e~lgr 617 (642)
T COG1020 565 GVPGELYIAGLGLALGYLNRPDLTAERFIAL---RLYRTGDLARPLADGALEYLGR 617 (642)
T ss_pred CCCeeeEECCcchhhhhcCChhhhHHHhhhc---cCccCCCeeeECCCCeEEEecc
Confidence 45787764 8999999999999776 3789999999888888888874
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0008 Score=67.63 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=109.7
Q ss_pred HHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCc-eeccccccccccccccCCCCCCCcCcccc----
Q psy2842 109 YRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIP-ICEVFGMSECAGAHTVSAPDDFKLDGVGR---- 182 (486)
Q Consensus 109 ~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~-i~~~yG~TE~~~~~~~~~~~~~~~~s~G~---- 182 (486)
-.+++-|+..+....-.-..+|.++ |..+-+++++.|.+ ||+. |.+.||.||...... |. +.+.|.+|+
T Consensus 339 GElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~-N~--d~~vGA~G~~~~~ 413 (649)
T KOG1179|consen 339 GELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLV-NY--DGRVGACGFMSRL 413 (649)
T ss_pred HHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceee-ee--cCccccccchhhh
Confidence 3778888887776655447788766 66788999998877 8876 999999999764433 22 233444443
Q ss_pred --ccCCceEEEECCC-CC---------------Cccce-----------ehhhhHhhHHHHHHHHHHcCCcccc---eEE
Q psy2842 183 --TIPGTQTKIVDPD-EE---------------GNGEI-----------CLKEYEANVRTVAKAFLKLGLERYH---SVC 230 (486)
Q Consensus 183 --p~p~~~~~i~d~~-~~---------------~~gel-----------~~~~y~~~~~~~a~~l~~~g~~~~~---~vg 230 (486)
-+-.+++--+|++ ++ +.|.+ .|.||.+....+.+.+.++=+++|| .+|
T Consensus 414 ~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tG 493 (649)
T KOG1179|consen 414 LKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTG 493 (649)
T ss_pred hhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeC
Confidence 1122222222322 21 23322 2458888777777766665555555 799
Q ss_pred EEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcC
Q psy2842 231 IIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 231 ~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
|+...|..+++++.. ..+=.|.+ ++.++.++.+..+....++.|.++.-
T Consensus 494 DlLv~D~~GylYF~DRtGDTFRWKGEN--VsTtEVe~~l~~~~~~~dv~VYGV~V 546 (649)
T KOG1179|consen 494 DLLVADELGYLYFKDRTGDTFRWKGEN--VSTTEVEDVLSALDFLQDVNVYGVTV 546 (649)
T ss_pred cEEEEecCCcEEEeccCCCceeecCCc--ccHHHHHHHHhhhccccceeEEEEec
Confidence 999999999998876 34445666 57788888887777777777777653
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00023 Score=70.60 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=55.2
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCcccccc--CCceEEEECCCCC------
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTI--PGTQTKIVDPDEE------ 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~--p~~~~~i~d~~~~------ 197 (486)
.+++.+++||++++++..+.+.+ +|+..++.||+||..++.... ..... |..+ ...-+-|+|++..
T Consensus 210 ~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~e----C~~~~-glhi~eD~~~~Ei~dP~t~e~l~dg 284 (438)
T COG1541 210 LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGE----CTERN-GLHIWEDHFIFEIVDPETGEQLPDG 284 (438)
T ss_pred cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccc----ccccc-CCCcchhhceeeeecCCcCccCCCC
Confidence 68999999999999999999998 899999999999987663111 00111 3322 3455677784432
Q ss_pred CccceehhhhH
Q psy2842 198 GNGEICLKEYE 208 (486)
Q Consensus 198 ~~gel~~~~y~ 208 (486)
+.||+.+..+.
T Consensus 285 e~GelV~T~L~ 295 (438)
T COG1541 285 ERGELVITTLT 295 (438)
T ss_pred CeeEEEEEecc
Confidence 45888877655
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0017 Score=69.82 Aligned_cols=207 Identities=13% Similarity=0.123 Sum_probs=137.6
Q ss_pred EECCCCCCccceehhhhHhhHHHHHH-HHHHcCCcccceEEEEeecC--CchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 191 IVDPDEEGNGEICLKEYEANVRTVAK-AFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 191 i~d~~~~~~gel~~~~y~~~~~~~a~-~l~~~g~~~~~~vg~~~~~~--~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+|..|. .+.++|.-...++++.|. .+.+-|+.+++++..+...+ .++++..+||...|.+++|+++.+.-+++..
T Consensus 115 ~id~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~ 193 (1363)
T KOG3628|consen 115 CIDKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKD 193 (1363)
T ss_pred EEcCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhc
Confidence 3455555 788999989999999998 67777999999998887755 4677789999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhcc-CCCCceEEE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET-IATNECCTL 346 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~i 346 (486)
+.+....+++.+.+...-.-.... ..... +....|....+...... .+..-.+ .... .++|
T Consensus 194 i~~~~~~~~~l~t~a~~r~~~~~~--~~~s~------------~k~v~~w~t~~~k~~~~---~~k~~~P~~~~~-~~~i 255 (1363)
T KOG3628|consen 194 IVNPTPERVALTTEAGERAFINDN--SPVSL------------AKAVAWWKTNDFKGNYT---KDKIKKPRMQLP-YGYI 255 (1363)
T ss_pred ccCCCccceEeehhhhHHHhhhcc--CcccH------------HHHHHhhhcccccceee---hhhccCCceeee-eEEE
Confidence 999999988887764211110000 00000 00011111100000000 0000001 1122 7899
Q ss_pred EcCCCCCCCCceeEechHHHHHHHHHHHH--------------------HccCCCCCeEEEEeCchhhHHHHHHHHHHHH
Q psy2842 347 VYTSGTEGASKPVMLSHDNITFNAACIIQ--------------------YFKLESAALSVISFLPLSHIAAQTVDIYSVM 406 (486)
Q Consensus 347 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~--------------------~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l 406 (486)
-||++++|+--|++.+|. +......... .++. +..+..+..+.....-|++++++.++
T Consensus 256 ~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~s~~lGlilGV~~al 333 (1363)
T KOG3628|consen 256 EFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPV-PSEDVLLTNLDPSQQLGLILGVLVAL 333 (1363)
T ss_pred EEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcccc-CcccceeeccCcccccchhhhhhhhh
Confidence 999999999999999998 4433322211 1122 45677777888888889999999999
Q ss_pred HhCcEEEEcCCC
Q psy2842 407 TVAATLWFADKN 418 (486)
Q Consensus 407 ~~G~tv~~~~~~ 418 (486)
.+|.+.+..+..
T Consensus 334 fsg~c~i~~p~~ 345 (1363)
T KOG3628|consen 334 FSGYCTIGCPKE 345 (1363)
T ss_pred hcCceeecCchh
Confidence 999999888774
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00052 Score=69.27 Aligned_cols=36 Identities=8% Similarity=0.156 Sum_probs=33.6
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccc
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSE 162 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE 162 (486)
-+++.++++|++++++..+.+++ ||+++++.||+||
T Consensus 212 ~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE 248 (430)
T TIGR02304 212 IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE 248 (430)
T ss_pred CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch
Confidence 46899999999999999999988 8999999999999
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.032 Score=55.65 Aligned_cols=79 Identities=14% Similarity=0.044 Sum_probs=51.6
Q ss_pred CCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCC--CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 339 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE--SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 339 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
+.++...|--||||||+|+-+..+...+...+..+...+... ..+|++....-..-..|-....+++-..|++++=..
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~ 167 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS 167 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence 456677799999999999999999999887777766554321 456666554432111111233455666788877665
Q ss_pred C
Q psy2842 417 K 417 (486)
Q Consensus 417 ~ 417 (486)
.
T Consensus 168 ~ 168 (438)
T COG1541 168 G 168 (438)
T ss_pred C
Confidence 5
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.056 Score=53.48 Aligned_cols=59 Identities=12% Similarity=-0.102 Sum_probs=50.5
Q ss_pred HcCCcccceEEEEeec-CCchhhhhHHHhHcCC---eeeecCCCCCHHHHHHhhhhCCceEEEEcChhHH
Q psy2842 220 KLGLERYHSVCIIGFN-APEWFYSDLGAIYAGG---FAAGMYTTNSPEACLHCLVTSDANICVVEDDKQL 285 (486)
Q Consensus 220 ~~g~~~~~~vg~~~~~-~~~~~~~~~g~~~~gg---~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~~ 285 (486)
.+| |.+|||++.. +.++++.+.|..+ || .+ |+|. .|+.+..+..+.++.++.++++.++
T Consensus 207 ~dg---W~~TGDlg~~~d~dG~l~~~gR~~-~G~~i~n--V~p~-IE~~L~~hp~V~eaaVvgvpd~~~g 269 (365)
T PRK09188 207 SRI---WLATGKKVYNFITRGLFSWSDGEG-TGDRIDN--EAPA-IQAALKSDPAVSDVAIALFSLPAKG 269 (365)
T ss_pred cCc---EEeCCCEEEEEcCCCeEEEEecCc-CCcCcee--eCHH-HHHHHHhCCCccEEEEEEEEcCCCC
Confidence 456 9999999997 7999999999888 66 45 6888 8999999999999999999887543
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.5 Score=42.91 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=21.9
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHH
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAA 371 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~ 371 (486)
..+..||||||.|-.+..+.........
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a 129 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAG 129 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHH
Confidence 4566799999999999999887754433
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 486 | ||||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 4e-06 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 4e-06 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 5e-06 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 5e-06 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 7e-06 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 1e-05 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 4e-05 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-05 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-04 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-04 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 2e-04 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-04 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 5e-04 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 5e-04 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 6e-04 |
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 9e-27
Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 4/199 (2%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
EY + KA GL + + N E+F + ++ G A +
Sbjct: 56 AEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRE 115
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
+H L S I L+K++ V+ +K IV + K D G D ++
Sbjct: 116 LVHSLGISKPTIVFSSKK-GLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNT 174
Query: 325 AAPDESLD-RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE--S 381
++ + +E + ++ +SG+ G K V L+H+NI + S
Sbjct: 175 PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVS 234
Query: 382 AALSVISFLPLSHIAAQTV 400
+V++ +P H
Sbjct: 235 PGTAVLTVVPFHHGFGMFT 253
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 187
SG AP+S E+ + + +G++E A ++ D K G+ +P
Sbjct: 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLF 371
Query: 188 QTKIVDPDEEGN-------GEICLK 205
+ K++D + GE+C+K
Sbjct: 372 KAKVIDL-DTKKSLGPNRRGEVCVK 395
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-25
Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 4/205 (1%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
EY +A+A + GL H + + N+ ++F LGA++ G A +
Sbjct: 54 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 113
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L+ + S + V L+KIL V+ + P ++ I+ + K D G S +
Sbjct: 114 LLNSMNISQPTVVFVSKK-GLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHL 172
Query: 325 AAPDESLDRVLETIATNE-CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ--YFKLES 381
D V E+ ++ ++ +SG+ G K V L H + +
Sbjct: 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII 232
Query: 382 AALSVISFLPLSHIAAQTVDIYSVM 406
+++S +P H + ++
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLI 257
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 187
SG AP+S E+ I + +G++E A ++ D K VG+ +P
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF 369
Query: 188 QTKIVDPDEEGN-------GEICLK 205
+ K+VD + G GE+C++
Sbjct: 370 EAKVVDL-DTGKTLGVNQRGELCVR 393
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+ E R VA K+G+++ + + ++PE+ + LGA + G ++P
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
S A + + + EK+ + +K + + PD G + + EL +
Sbjct: 113 LAKHAKASRAKLLITQAC-YYEKVKDFARESD-VKVMC-VDSAPD--GCLHFSELTQADE 167
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+ I+ ++ L Y+SGT G K VML+H + + A +
Sbjct: 168 NEAPQ------VDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFH 221
Query: 385 S---VISFLPLSHIAAQTVDIYSVMTVAATL 412
S ++ LP+ HI A + + V A +
Sbjct: 222 SEDVILCVLPMFHIYALNSIMLCGLRVGAPI 252
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVS-----APDDFKLDGVGR 182
R+ SG AP+ EL+ + + + +GM+E + P D K G
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT 359
Query: 183 TIPGTQTKIVDPDEEGN-------GEICLK 205
+ + KIVDP E G GEIC++
Sbjct: 360 VVRNAEMKIVDP-ETGASLPRNQPGEICIR 388
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-23
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 14/215 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+ R +A F KLG+ + V ++ N PE+ S L A + G A +P
Sbjct: 92 SDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAE 151
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDKPGVISWDELMELG 323
S+ + + E ++KI ++ + I E P G + + EL +
Sbjct: 152 IAKQAKASNTKLIITEAR-YVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQST 210
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
A + I+ ++ L Y+SGT G K VML+H + + Q E+
Sbjct: 211 TEASEVIDS---VEISPDDVVALPYSSGTTGLPKGVMLTHKGLV---TSVAQQVDGENPN 264
Query: 384 LS------VISFLPLSHIAAQTVDIYSVMTVAATL 412
L ++ LP+ HI A + + V A +
Sbjct: 265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI 299
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 130 RVSLSGAAPISTELKRYFLSL--DIPICEVFGMSECAGAHTVS-----APDDFKLDGVGR 182
RV SGAAP+ EL+ + + + + +GM+E +S P K G
Sbjct: 347 RVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT 406
Query: 183 TIPGTQTKIVDPDEEGN-------GEICLK 205
+ + KIVDP + G+ GEIC++
Sbjct: 407 VVRNAEMKIVDP-DTGDSLSRNQPGEICIR 435
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 2e-20
Identities = 41/235 (17%), Positives = 80/235 (34%), Gaps = 23/235 (9%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E E R A A LG+ + ++ + + LGA+YAG T +P
Sbjct: 52 GELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPAD 111
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKA--IVQYEGKPDKPGVISWDELMEL 322
++ L S A + ++ + + IV + + ++EL++
Sbjct: 112 YVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELID- 169
Query: 323 GRAAPDESLDRVLETIAT--NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY-FKL 379
AA + AT ++ +Y+SG+ G K + +H N+ + A + +
Sbjct: 170 --AAAPA-----AKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI 222
Query: 380 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATL-----WFADKNALKV---YKAT 426
+ V S L + ++V AT ++ T
Sbjct: 223 AENDV-VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R+ S + E+ F + I + G +E + + GR +PG +
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE 362
Query: 189 TKIVDPDEEGN-------GEICLK 205
++ DE G+ G++ +K
Sbjct: 363 IELR--DEAGHAVPDGEVGDLYIK 384
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 4e-20
Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 13/196 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
E + +A + G+ + V + N+ ++ + +
Sbjct: 56 LEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFE 115
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
H L S+A VV E V + + V V S E+M+ G
Sbjct: 116 LEHILNDSEATTLVVHSM-LYENFKPVLEKTGVERVFV------VGGEVNSLSEVMDSGS 168
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+ E +A + YT GT G K VML+H N+ NA + L
Sbjct: 169 EDFENVKVNPEEDVAL-----IPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMD- 222
Query: 385 SVISFLPLSHIAAQTV 400
+++ +P+ H A +
Sbjct: 223 TIVGCMPMFHSAEFGL 238
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 130 RVSLSGAAPISTELKRYFLSL--------DIPICEVFGMSECAGAHTVSAPDDFKLDG-V 180
+V +GA P++ L L L + +++GM+E T + P
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358
Query: 181 GRTIPGTQTKIVDPDEEGN-------GEICLK 205
G + + K++ E+G GEI ++
Sbjct: 359 GVPMSDIELKVISL-EDGRELGVGESGEIVIR 389
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 5e-20
Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 20/211 (9%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA---GMYTTNS 261
E A VA + GL+ V + E L + AGG YT
Sbjct: 32 AELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL-- 89
Query: 262 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELME 321
E + + ++ I V D + + I + A+ + G S +
Sbjct: 90 HELD-YFITDAEPKIVVC-DPSKRDGIAAIAAKVGATVETL------GPDGRGSLTDAAA 141
Query: 322 LGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 381
A ++ ++YTSGT G SK MLSHDN+ N+ ++ Y++
Sbjct: 142 GASEAFAT------IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTP 195
Query: 382 AALSVISFLPLSHIAAQTVDIYSVMTVAATL 412
+I LP+ H V + ++
Sbjct: 196 DD-VLIHALPIYHTHGLFVASNVTLFARGSM 225
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 6e-12
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 40/142 (28%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R+ +SG+AP+ + R + + + E +GM+E + D VG +PG
Sbjct: 271 RLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330
Query: 189 TKIVDPDEEGN-------GEICL------KEY----EANVRTVAKAFLKLGLERYHSVCI 231
++ DP E G G I + K Y E F G
Sbjct: 331 ARVTDP-ETGKELPRGDIGMIEVKGPNVFKGYWRMPEKT----KSEFRDDG--------- 376
Query: 232 IGFNAPEWFYS-DLGAIYAGGF 252
+F + DLG I G+
Sbjct: 377 -------FFITGDLGKIDERGY 391
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 5e-20
Identities = 27/208 (12%), Positives = 66/208 (31%), Gaps = 13/208 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
++Y A +A L+ G+ V I+ N E G + + +
Sbjct: 35 RDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADE 94
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L ++ V D + + V +K + +L
Sbjct: 95 IAFVLGDGAPSVVVAGTD-YRDIVAGVLPSLGGVKKAYAIGDGSG-----PFAPFKDLAS 148
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
P + + +++T+ G + ++S N+ + ++ ++L A +
Sbjct: 149 DTPFSAPEFGAADGFV-----IIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADV 203
Query: 385 SVISFLPLSHIAAQTVDIYSVMTVAATL 412
++ LPL H+ + + ++
Sbjct: 204 NLGM-LPLFHVTGLGL-MLTLQQAGGAS 229
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQT 189
R P + E + FG SE +G T + D + GR +
Sbjct: 275 RAVTGLDTPETIERFEATC-PNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTV 332
Query: 190 KIVDPDEEGN-------GEICLK 205
+VD + GEI L+
Sbjct: 333 AVVDAE--DRPLPPGEVGEIVLR 353
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-19
Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 14/202 (6%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+ A A LG+ + V ++ N+ E+ GA G A + T +
Sbjct: 47 AQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPE 106
Query: 265 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
L S + + + I ++AQ + + G D L E R
Sbjct: 107 VSFILSDSGSKVVIYGAP-SAPVIDAIRAQADPPGTVTDWIG---------ADSLAERLR 156
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
+A D ++ ++YTSGT G K V+ +H+++ A+ +
Sbjct: 157 SAAA---DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDR 213
Query: 385 SVISFLPLSHIAAQTVDIYSVM 406
++ LP+ H+AA T I+S M
Sbjct: 214 LLLP-LPMFHVAALTTVIFSAM 234
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGT 187
R ++G AP+ L + + + +I + + + ++E G T+ +D K GR T
Sbjct: 287 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFT 346
Query: 188 QTKIVDPDEE----GNGEICLK 205
+ D G GE+ +K
Sbjct: 347 DVAVRGDDGVIREHGEGEVVIK 368
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 5e-18
Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 23/211 (10%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA---GMYTTNSP 262
E A V VA GL V ++ N+ + + L G A S
Sbjct: 34 ELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK--SA 91
Query: 263 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 322
E + + V+ +Q+ + Q I+ S+ +E
Sbjct: 92 EL-AELIKRGEMTAAVIAVGRQVADAI---FQSGSGARIIFLGDLVRDGEPYSYGPPIED 147
Query: 323 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 382
+ P + + YTSGT G K ++ + L
Sbjct: 148 PQREPAQ-------------PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 383 ALSVI-SFLPLSHIAAQTVDIYSVMTVAATL 412
+V+ +PL H+ + + + + T
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 43/147 (29%)
Query: 126 LDRCRVSLSGAAPISTE-LKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTI 184
LD R A + L+ L ++G +E + + P K
Sbjct: 271 LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQP---KTGTEMAPG 327
Query: 185 PGTQTKIVDPDEEGN--------GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIG-FN 235
++ +IV + GE+ + S +G N
Sbjct: 328 FFSEVRIVRIGGGVDEIVANGEEGELIVA-------------------ASDSAF-VGYLN 367
Query: 236 APE---------WFYS-DLGAIYAGGF 252
P+ W+ + D+ G
Sbjct: 368 QPQATAEKLQDGWYRTSDVAVWTPEGT 394
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-17
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 130 RVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPGT 187
+ L G A +S + L ++PI FGM+E + P+ + D VG
Sbjct: 277 QKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANV 336
Query: 188 QTKIVDPDEEGNGEICLK 205
KI +P++EG+GE+ +K
Sbjct: 337 DVKIKNPNKEGHGELMIK 354
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-16
Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 7/209 (3%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA 264
+ +AK L + V + N+ + A A + T +P
Sbjct: 30 QNLYCEASLLAKR---LKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNE 86
Query: 265 CLHCLVTSDANICVVEDD-KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELG 323
+ + + D + + + + G D I +D E
Sbjct: 87 MTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETV 146
Query: 324 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 383
+ + + + ++ ++++TSGT G K V + N +A + +
Sbjct: 147 VPK-ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDT 205
Query: 384 LSVISFLPLSHIAAQTVDIYSVMTVAATL 412
+ +S LP+ HI+ +V + +V+ T+
Sbjct: 206 -NWLSVLPIYHISGLSVLLRAVI-EGFTV 232
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 1e-16
Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 26/221 (11%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---- 260
+E + +A F KLG+++ V + N E+F G A
Sbjct: 54 RELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLG---ALPVFALPSHR 110
Query: 261 SPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISW 316
S E + ++A ++ D +V+++ P LK I+ G+ +
Sbjct: 111 SSEI-TYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII-VAGEA--EEFLPL 166
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
++L P+ V L + G+ G SK + +HD+ ++ ++
Sbjct: 167 EDLHTEPVKLPEVKSSDV---------AFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV 217
Query: 377 FKLESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFAD 416
L+ + + + + LP++H + + V+ + +
Sbjct: 218 CWLDHSTVYLAA-LPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 43/144 (29%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHT-VSAPDDFKLDGVGRTI-PG 186
+V G A S E R + + +VFGM+E +T + P++ ++ G+ + P
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360
Query: 187 TQTKIVDPDEEGN-------GEIC------LKEY----EANVRTVAKAFLKLGLERYHSV 229
++++ D G + ++ Y E N A +F + G
Sbjct: 361 DESRVWDDH--DRDVKPGETGHLLTRGPYTIRGYYKAEEHN----AASFTEDG------- 407
Query: 230 CIIGFNAPEWFYS-DLGAIYAGGF 252
++ + D+ + G+
Sbjct: 408 ---------FYRTGDIVRLTRDGY 422
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 3e-16
Identities = 25/251 (9%), Positives = 71/251 (28%), Gaps = 30/251 (11%)
Query: 181 GRTIPGTQTKIVDPDEE----GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNA 236
+ T+ D G ++ +E +A + + G++ + + N
Sbjct: 26 DLPLTDILTRHAASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNV 85
Query: 237 PEWFYSDLGAIYAGG---FAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ----LEKIL 289
E + + + G A + E + + + + + +
Sbjct: 86 AELYITFFALLKLGVAPVLALFSHQ--RSEL-NAYASQIEPALLIADRQHALFSGDDFLN 142
Query: 290 KVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYT 349
+ ++ + G + + + +E +
Sbjct: 143 TFVTEHSSIRVVQLLND----SGEHNLQDAINHPAEDFTA------TPSPADEVAYFQLS 192
Query: 350 SGTEGASKPVMLSHDNITFNAACIIQYFKL--ESAALSVISFLPLSHIAAQTVD-IYSVM 406
GT G K + +H++ ++ ++ + ++ L +P +H A + V
Sbjct: 193 GGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCA---IPAAHNYAMSSPGSLGVF 249
Query: 407 TVAATLWFADK 417
T+ A
Sbjct: 250 LAGGTVVLAAD 260
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 43/144 (29%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHT-VSAPDDFKLDGVGRTI-PG 186
++ G A +S L + + + +VFGM+E +T + + + G + P
Sbjct: 305 KLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD 364
Query: 187 TQTKIVDPDEEGN-------GEIC------LKEY----EANVRTVAKAFLKLGLERYHSV 229
+ + D + GN G + + Y + N A AF G
Sbjct: 365 DEVWVADAE--GNPLPQGEVGRLMTRGPYTFRGYYKSPQHN----ASAFDANG------- 411
Query: 230 CIIGFNAPEWFYS-DLGAIYAGGF 252
++ S DL +I G+
Sbjct: 412 ---------FYCSGDLISIDPEGY 426
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 26/221 (11%), Positives = 63/221 (28%), Gaps = 22/221 (9%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---- 260
E + +A + GL + + + N E++ + AG +
Sbjct: 59 IELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG---VVVLNALYSHR 115
Query: 261 SPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISW 316
E + + + + + I + + I+ + G++ W
Sbjct: 116 QYEL-NAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDW 174
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 376
E + +E + G+ G K + +H++ ++ +
Sbjct: 175 IET--------PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI 226
Query: 377 FKLESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFAD 416
L S + + LP H + V+ + A
Sbjct: 227 CGLNSNTRLLCA-LPAPHNFMLSSPGALGVLHAGGCVVMAP 266
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 43/144 (29%)
Query: 130 RVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHT-VSAPDDFKLDGVGRTIPG- 186
++ G A L R L+ + +VFGM+E +T + D+ GR I
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369
Query: 187 TQTKIVDPDEEGN-------GEIC------LKEY----EANVRTVAKAFLKLGLERYHSV 229
+ KIVD G + Y E N ++ F +
Sbjct: 370 DEIKIVDEQ--YREVPEGEIGMLATRGPYTFCGYYQSPEHN----SQVFDEDN------- 416
Query: 230 CIIGFNAPEWFYS-DLGAIYAGGF 252
++YS DL G
Sbjct: 417 ---------YYYSGDLVQRTPDGN 431
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 34/212 (16%)
Query: 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 265
E A A + V + A E + + A+ AG A + + +
Sbjct: 53 ELAAAAGATAG-----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKEL 107
Query: 266 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 325
H L S ++ + D +L P G + ++ R
Sbjct: 108 AHILSDSAPSLVLAPPDAEL----------------------PPALGALERVDVDVRARG 145
Query: 326 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS 385
A E + + +VYTSGT G K ++ + + ++ +
Sbjct: 146 AVPE------DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQW-TGEDV 198
Query: 386 VISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417
++ LPL H+ + I + ++ +
Sbjct: 199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 40/143 (27%)
Query: 130 RVSLSGAAPISTELKRYFLSL-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188
R+ +SG+A + + + E +GM+E +V A + + VG +PG +
Sbjct: 275 RLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334
Query: 189 TKIVDPD--------EEGNGEICL------KEY----EANVRTVAKAFLKLGLERYHSVC 230
++V+ D E GEI + EY +A A AF + G
Sbjct: 335 LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT----AAAFTEDG-------- 382
Query: 231 IIGFNAPEWFYS-DLGAIYAGGF 252
+F + D+ G+
Sbjct: 383 --------FFRTGDMAVRDPDGY 397
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 12/146 (8%)
Query: 220 KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279
GL+R V ++ PEW+ LG I AG L+ L S A +V
Sbjct: 93 ACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAK-AIV 151
Query: 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 339
D+ ++++ V ++CP L+ + K G +++ +L+ A +
Sbjct: 152 AGDEVIQEVDTVASECPSLRIKLLVSEKS-CDGWLNFKKLLN---EASTT-----HHCVE 202
Query: 340 T--NECCTLVYTSGTEGASKPVMLSH 363
T E + +TSGT G K S+
Sbjct: 203 TGSQEASAIYFTSGTSGLPKMAEHSY 228
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 3/151 (1%)
Query: 214 VAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 273
A F+K G+ + V + + +++Y LG G A ++ + +
Sbjct: 99 AANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAG 158
Query: 274 ANICVVEDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD 332
+ V + + E++ + A+C + G G I + + +E ++P
Sbjct: 159 LKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELE--ESSPIFERP 216
Query: 333 RVLETIATNECCTLVYTSGTEGASKPVMLSH 363
+ + C + ++SGT G K V +
Sbjct: 217 TGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 8e-09
Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 28/196 (14%)
Query: 209 ANVRTVAKAFLKLGL--ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 266
VA+ + G +R V I E+ + LGA+ AG A +
Sbjct: 66 RRTLNVAQELSRCGSTGDR---VVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDE 122
Query: 267 H-CLVTSDAN-ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 324
V SD++ + ++ ++ +++ A+ P P +I D L
Sbjct: 123 RSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESP----------PSIIEVDLL----- 167
Query: 325 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 384
D + L YTSG+ V++SH N+ N ++ + ++ +
Sbjct: 168 -DLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGI 226
Query: 385 S-----VISFLPLSHI 395
++S+LP H
Sbjct: 227 PPPNSALVSWLPFYHD 242
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 18/188 (9%)
Query: 209 ANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC--L 266
+ + +A G + V ++ + LG +YAG A +Y +
Sbjct: 48 QHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKA 107
Query: 267 HCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAA 326
+VT+ + V+ ++K + K K I+ + + ++
Sbjct: 108 QRIVTNSKPVIVLMIADHIKKFTADELNT---------NPKFLKIPAIALESIELNRSSS 158
Query: 327 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSV 386
+I +N+ L YTSG+ K VM+SH N+ N I F + +
Sbjct: 159 WQ------PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIF 212
Query: 387 ISFLPLSH 394
S+LP H
Sbjct: 213 -SWLPPHH 219
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 61/437 (13%), Positives = 117/437 (26%), Gaps = 148/437 (33%)
Query: 58 LCQKQENGEWKKVTYKLQTTGVKRWIA------NYAKSTSLQHYMAYLEK--NVSEPYT- 108
L KQE K V L+ +++ S + Y+ ++ N ++ +
Sbjct: 71 LLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 109 YRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHT 168
Y + R K++QA+ EL+ + G+
Sbjct: 129 YNVSRLQPYLKLRQAL----------------LELR------PAKNVLIDGVL------- 159
Query: 169 VSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHS 228
G G+T + L ++
Sbjct: 160 ----------GSGKT-------------------WV---------ALDVCLSYKVQ---- 177
Query: 229 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVT----SDANICVVEDDKQ 284
C + F F+ +L NSPE L L D N D
Sbjct: 178 -CKMDFKI---FWLNLK------------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 285 LEKILKVKAQCPKLKAIVQYEGKPDKPGVIS--WDELMELGRAAPDESLDRVLETIATNE 342
K+ Q +L+ +++ + + V+ + +
Sbjct: 222 NIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNA--------------KAWNAF-NLS 265
Query: 343 CCTLVYT-------SGTEGASKPVMLSHDNITFN--------AACI-IQYFKLESAALSV 386
C L+ T + + + L H ++T + + L L+
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT- 324
Query: 387 ISFLPLSHIAAQTVDIYSVMTVAATLW--FADKNALKVYKATQAAIDRANLKSISNAQKI 444
+ LS IA D W + N K+ +++++ L+ +
Sbjct: 325 TNPRRLSIIAESIRD-------GLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKMF 375
Query: 445 QKFEFLPADFSIPTGEL 461
+ P IPT L
Sbjct: 376 DRLSVFPPSAHIPTILL 392
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 27/167 (16%)
Query: 205 KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAP---EWFY--SDLGAIYAGGFAAGMYTT 259
E R + LG+ V +GFN E ++ +GA+ ++T
Sbjct: 51 AEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAV--------LHTA 102
Query: 260 N---SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISW 316
N SP+ + L ++ + + D L + ++ + ++ V + G +++
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVM-DEKAPEGYLAY 160
Query: 317 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 363
+E LG A + E C + YT+GT G K V+ SH
Sbjct: 161 EEA--LGEEADPVRVP---E----RAACGMAYTTGTTGLPKGVVYSH 198
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 45/167 (26%)
Query: 114 WLILSKVKQAMG--LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSA 171
WL L+ ++ G L R + G + L F + + + + +G++E + +
Sbjct: 278 WLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNF 337
Query: 172 PDDFKLDGV------------GRTIPGTQTKIVDP-------DEEGNGEICL------KE 206
L+ + G IP + ++ D D + GE+ L
Sbjct: 338 VKS-HLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 396
Query: 207 YEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
Y N A G +F + D+ G+
Sbjct: 397 YYGNEEATRSALTPDG----------------FFRTGDIAVWDEEGY 427
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 20/125 (16%)
Query: 114 WLILSKVKQAMGLDRCRVS--LSGAAPISTELKRYF---LSLDIPICEVFGMSECAG-AH 167
L K + + + ++ G ++ + ++ + D +G + G +
Sbjct: 216 LRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSR 275
Query: 168 TVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEG-NGEICLKEYEANVRTVAK-AFLK 220
++ + + P +VD E G G + V ++ AF
Sbjct: 276 SLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI-------VTHLSPWAFYP 328
Query: 221 LGLER 225
ER
Sbjct: 329 RVAER 333
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 99.95 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 99.94 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 99.94 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 99.94 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 99.94 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 99.93 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 99.93 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 99.93 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 99.93 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 99.93 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 99.93 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 99.93 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 99.93 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 99.93 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 99.93 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 99.92 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.92 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.91 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 99.91 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.91 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 99.91 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 99.91 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 99.91 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.91 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 99.9 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 99.89 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 99.89 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.89 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 99.89 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 99.86 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 99.85 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 99.83 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 99.82 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 99.82 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 99.81 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 99.78 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 99.77 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 99.76 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 99.76 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 99.76 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 99.75 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.75 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.74 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 99.74 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 99.73 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 99.73 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 99.72 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 99.72 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 99.71 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 99.7 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 99.7 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.69 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.68 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.68 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 99.67 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 99.66 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 99.66 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 99.64 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 99.62 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 99.61 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 99.6 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.56 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 99.54 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.49 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.46 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.44 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.43 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.24 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.15 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.13 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.12 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 98.96 |
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=242.28 Aligned_cols=263 Identities=17% Similarity=0.198 Sum_probs=197.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 48 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 48 EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHh-hhccCCCCceEEEEcCCCCCCCCc
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR-VLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
++++ ..+.+.......+.+..++..+.....++..++.++.............. ......++++++|+|||||||.||
T Consensus 128 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK 206 (550)
T 3rix_A 128 VSKK-GLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK 206 (550)
T ss_dssp ECGG-GHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCC
T ss_pred EcHH-HHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcc
Confidence 9876 55666667777888888887766554456677777766543221110000 011123578999999999999999
Q ss_pred eeEechHHHHHHHHHHHHH---ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH----
Q psy2842 358 PVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA---- 429 (486)
Q Consensus 358 gV~~sh~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~---- 429 (486)
||+++|+++.......... .++ .+++++++.+|++|.+|+ ..++.++..|+++++.+. ++..+.+.+.+.
T Consensus 207 gV~~th~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~ 284 (550)
T 3rix_A 207 GVALPHRTACVRFSHARDPIFGNQI-IPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQS 284 (550)
T ss_dssp EEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSE
T ss_pred hhhhhHHHHHHHHHHhhhhhccccC-CCCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 9999999998876655443 344 678999999999999997 457788999999999765 444555555441
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+...+......+......+.+|+..+.
T Consensus 285 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 321 (550)
T 3rix_A 285 ALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSK 321 (550)
T ss_dssp EEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCH
T ss_pred EEeCcHHHHHHHhCccccccCcccccEEEEecCCCCH
Confidence 12333555666666666666666777777876553
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-26 Score=237.29 Aligned_cols=261 Identities=17% Similarity=0.219 Sum_probs=193.9
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 50 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 50 GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhcc--C-CCCceEEEEcCCCCCCC
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET--I-ATNECCTLVYTSGTEGA 355 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~a~i~~TSGTTG~ 355 (486)
++++ ..+.+..+....+....++..++....++..+|+++.......... ...... . ..+++++|+|||||||.
T Consensus 130 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~ 206 (548)
T 2d1s_A 130 SSKK-GLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQ--ASSFKTVEVDRKEQVALIMNSSGSTGL 206 (548)
T ss_dssp ECTT-THHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCC--GGGCCCCCCCTTTCEEEEECCSSCSSS
T ss_pred EcHH-HHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCC--cccccccccCCCCCEEEEEeCCCCCCC
Confidence 9876 3444445545555455566554332112344577776554221000 000000 0 23899999999999999
Q ss_pred CceeEechHHHHHHHHHHHHH---ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH--
Q psy2842 356 SKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA-- 429 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~-- 429 (486)
||||+++|+++.......... +++ .+++++++.+|++|.+|+...++.++ .|+++++.+. ++..+.+.+.+.
T Consensus 207 PKgv~~sh~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~ 284 (548)
T 2d1s_A 207 PKGVQLTHENIVTRFSHARDPIYGNQV-SPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKC 284 (548)
T ss_dssp CCCEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTE
T ss_pred CCEEEecHHHHHHHHHHhhchhhccCC-CccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCC
Confidence 999999999999877766554 455 67899999999999999877778888 9999998764 555555555441
Q ss_pred ----HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 ----IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 ----i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+...+......+......+.+|+..+.
T Consensus 285 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 323 (548)
T 2d1s_A 285 TSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323 (548)
T ss_dssp EEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCH
T ss_pred cEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCH
Confidence 12333455555555555556666666677765554
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=237.16 Aligned_cols=253 Identities=15% Similarity=0.203 Sum_probs=188.3
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 124 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLL 124 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ..+.+..+....+.++.+++.++... .+..+++++....... ....++++++|+|||||||.|||
T Consensus 125 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~a~i~~TSGTTG~PKg 193 (541)
T 1v25_A 125 FDPN-LLPLVEAIRGELKTVQHFVVMDEKAP-EGYLAYEEALGEEADP---------VRVPERAACGMAYTTGTTGLPKG 193 (541)
T ss_dssp ECGG-GHHHHHHHGGGCSSCCEEEESSSCCC-TTCEEHHHHCCSCCCC---------CCCCTTSEEEEEEECSSSSSCEE
T ss_pred EChh-HHHHHHHHHhhCCCccEEEEecCCCC-cccccHHHHhhccCCc---------ccCCCCCcEEEEECCCCCCCCcE
Confidence 9875 44555556666676766766554321 1334555543322110 13456899999999999999999
Q ss_pred eEechHHHHHHHHHH--HHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC--ChHHHHHHHHHH-----
Q psy2842 359 VMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK--NALKVYKATQAA----- 429 (486)
Q Consensus 359 V~~sh~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~--~~~~~~~~i~~~----- 429 (486)
|+++|+++....... ...+++ .++|++++.+|++|.+++ ..++.++..|+++++.+. ++..+.+.+.+.
T Consensus 194 V~~sh~~l~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~ 271 (541)
T 1v25_A 194 VVYSHRALVLHSLAASLVDGTAL-SEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT 271 (541)
T ss_dssp EEEEHHHHHHHHHHTTSTTTTCC-CTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEE
T ss_pred eeeehHHHHHHHhhhhhcccccC-CCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEE
Confidence 999999998665542 233445 678999999999999987 456788999999999764 555555555441
Q ss_pred -HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 -IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 -i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+..........+.+....+.+|+..+.
T Consensus 272 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 307 (541)
T 1v25_A 272 AGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPR 307 (541)
T ss_dssp EECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCH
T ss_pred ecchHHHHHHHhhhhccCCcchhccEEEECCCCCCH
Confidence 11222344444333333344555556667765554
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=236.96 Aligned_cols=253 Identities=14% Similarity=0.170 Sum_probs=190.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|++|..+.+++.++++.+++++++
T Consensus 48 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (539)
T 1mdb_A 48 NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127 (539)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChh----HHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 279 VEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 279 ~~~~~----~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
+++.. ....+..+....+.++.+++.++.. . +.++....... . ......++++++|+|||||||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~-~-----~~~~~~~~d~a~i~~TSGTTG 195 (539)
T 1mdb_A 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---E---FLPLEDLHTEP-V-----KLPEVKSSDVAFLQLSGGSTG 195 (539)
T ss_dssp EESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---T---SEEGGGCCCCC-C-----CCCCCCTTSEEEEEECCCSSS
T ss_pred eccccccccHHHHHHHHHhcCCCccEEEEcCCcc---c---hhhhhhccccc-c-----ccCCCCcCceEEEEeCCCcCC
Confidence 98752 1223334445566666665544321 1 11111111100 0 012345789999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC-ChHHHHHHHHHH---
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK-NALKVYKATQAA--- 429 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~--- 429 (486)
.||||+++|+++.+.+......+++ ..++++++.+|++|.+++.. .++.++..|+++++.+. ++..+.+.+.+.
T Consensus 196 ~PKgV~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t 274 (539)
T 1mdb_A 196 LSKLIPRTHDDYIYSLKRSVEVCWL-DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVT 274 (539)
T ss_dssp SCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCS
T ss_pred CCcEEEEehHHHHHHHHHHHHhhCC-CCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 9999999999999988888888887 78899999999999999876 78999999999999765 444555555441
Q ss_pred ---HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 ---IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 ---i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+..........+.+....+.+|+..+.
T Consensus 275 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~ 312 (539)
T 1mdb_A 275 ITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSA 312 (539)
T ss_dssp EEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCH
T ss_pred EEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCH
Confidence 12233344444443344455556666677776554
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=234.07 Aligned_cols=282 Identities=11% Similarity=0.113 Sum_probs=202.2
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
+.+++. ..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++
T Consensus 47 ~Al~~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~ 122 (544)
T 3o83_A 47 LAIICG----ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAF 122 (544)
T ss_dssp EEEEET----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHH
T ss_pred eEEEcC----CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHH
Confidence 455553 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhH----HHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 269 LVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~----~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
++.++++++++++... .+....+....+....++..+... ....+.++......... ......+++++
T Consensus 123 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~d~a 194 (544)
T 3o83_A 123 IKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA---TDFGLLDWIETPAETFV-----DFSSTPADEVA 194 (544)
T ss_dssp HHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT---TSEEHHHHHHSCCSSCC-----CCCCCCTTSEE
T ss_pred HHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc---cccchhhhhhccccccc-----ccccCCccceE
Confidence 9999999999987532 123334444555555566554332 22334444443221111 01234578999
Q ss_pred EEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC-ChHHH
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK-NALKV 422 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~-~~~~~ 422 (486)
+|+|||||||.||||+++|+++...+......+++ .++|++++.+|++|.+++.. .++.++..|+++++.+. ++...
T Consensus 195 ~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~ 273 (544)
T 3o83_A 195 FFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGL-NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNC 273 (544)
T ss_dssp EEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHH
T ss_pred EEEECCCcccCCceEEechHHHHHHHHHHHHHhCC-CCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHH
Confidence 99999999999999999999999999988888888 78999999999999999875 68899999999999765 44455
Q ss_pred HHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 423 YKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 423 ~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
++.+.+. ..+..+..+..........+.+....+.+|+..+. .+.+. +.+.+...+.+.|+
T Consensus 274 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~-~~~~~-~~~~~~~~~~~~YG 340 (544)
T 3o83_A 274 FSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPE-SLARQ-VPEVLNCKLQQVFG 340 (544)
T ss_dssp HHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCH-HHHTH-HHHHHCSEEEEEEE
T ss_pred HHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCH-HHHHH-HHHHhCCcEEeeec
Confidence 5554431 11233344444444444455555666667766554 22222 44444333444443
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=227.29 Aligned_cols=251 Identities=20% Similarity=0.216 Sum_probs=185.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 41 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 120 (517)
T 3r44_A 41 DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI 120 (517)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++. ....+..+....+....++... ...++.+.........+ .....++++++|+|||||||.|||
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------~~~~~~~d~a~i~~TSGTTG~PKg 187 (517)
T 3r44_A 121 YGAP-SAPVIDAIRAQADPPGTVTDWI------GADSLAERLRSAAADEP------AVECGGDDNLFIMYTSGTTGHPKG 187 (517)
T ss_dssp ECGG-GHHHHHHHHHSSSCCTTCCEEE------EHHHHHHHHHHCCCCCC------CCCCCTTSEEEEEEECC---CCEE
T ss_pred ECCc-hHHHHHHHHhccCCccEEEEcc------CcccHHHHhhccCcCCC------CCCCCCCCeEEEEECCcccccCce
Confidence 9876 3444444444433322222111 11233343333221111 123457899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH------Hh
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA------ID 431 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~------i~ 431 (486)
|+++|+++...+......+++ ..+|++++.+|++|.+++...++..+ .|+++++.+. ++....+.+.+. ..
T Consensus 188 V~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~ 265 (517)
T 3r44_A 188 VVHTHESVHSAASSWASTIDV-RYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAV 265 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHSCC-CTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECSSCCHHHHHHHHHHTTCCEEEEC
T ss_pred eeeeHHHHHHHHHHHHHhcCC-CCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeH
Confidence 999999999999888888888 78899999999999999866566666 8999888765 555555555441 12
Q ss_pred hhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 432 RANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 432 ~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+..+..+...+......+....+.+.+|+..+.
T Consensus 266 P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 298 (517)
T 3r44_A 266 PAILNFMRQVPEFAELDAPDFRYFITGGAPMPE 298 (517)
T ss_dssp HHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCH
T ss_pred HHHHHHHHhCcccccCCCCcccEEEECCCCCCH
Confidence 333445555555555566666677777876653
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=233.67 Aligned_cols=262 Identities=18% Similarity=0.251 Sum_probs=193.8
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
..+++.++ ...+||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++
T Consensus 39 ~a~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~ 116 (536)
T 3ni2_A 39 PCLINGAN--GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116 (536)
T ss_dssp EEEEETTT--CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHH
T ss_pred eEEEECCC--CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHH
Confidence 44554322 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEc
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY 348 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 348 (486)
++.++++++++++. ..+.+....... ..+ ++..+.. ..+...++++........ ......++++++|+|
T Consensus 117 l~~~~~~~~i~~~~-~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~d~a~i~~ 185 (536)
T 3ni2_A 117 AKASRAKLLITQAC-YYEKVKDFARES-DVK-VMCVDSA--PDGCLHFSELTQADENEA------PQVDISPDDVVALPY 185 (536)
T ss_dssp HHHHTEEEEEECGG-GTHHHHHHHHHH-TCE-EEESSCC--CTTCEETHHHHTSCGGGC------CCCCCCTTSEEECCE
T ss_pred HHhcCCEEEEEChH-HHHHHHHHHhhc-Cce-EEEecCC--CCCccCHHHHhhcccccc------ccCCCCccCEEEEEc
Confidence 99999999999876 333333332222 222 3433322 234455666554322111 112346789999999
Q ss_pred CCCCCCCCceeEechHHHHHHHHHHHHH----ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHH
Q psy2842 349 TSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVY 423 (486)
Q Consensus 349 TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~ 423 (486)
||||||.||||+++|+++...+...... +.+ ..++++++.+|++|.+++...++.++..|+++++.+. ++..+.
T Consensus 186 TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 264 (536)
T 3ni2_A 186 SSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLL 264 (536)
T ss_dssp ECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCC-CTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHH
T ss_pred CCCccccchHHHhhHHHHHHHHHHHHhhccccccC-CCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHH
Confidence 9999999999999999998876655432 234 6789999999999999998888999999999999865 444455
Q ss_pred HHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 424 KATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 424 ~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+.+.+. ..+..+..+...+......+.+..+.+.+|+..+.
T Consensus 265 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~ 311 (536)
T 3ni2_A 265 GLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGK 311 (536)
T ss_dssp HHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCH
T ss_pred HHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCH
Confidence 544442 12333455666666666666666777777775543
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-25 Score=228.43 Aligned_cols=251 Identities=17% Similarity=0.155 Sum_probs=188.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|++|..+.+++.++++.+++++++
T Consensus 50 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i 129 (549)
T 3g7s_A 50 PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLV 129 (549)
T ss_dssp CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
+++. ..+.+.......+ ++.+++.++ ...++.++...+...... ......+++++|+|||||||.|||
T Consensus 130 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~~d~a~i~~TSGTTG~PKg 197 (549)
T 3g7s_A 130 VHSM-LYENFKPVLEKTG-VERVFVVGG-----EVNSLSEVMDSGSEDFEN-----VKVNPEEDVALIPYTGGTTGMPKG 197 (549)
T ss_dssp EEGG-GHHHHHHHHTTSC-CCEEEEETC-----SSSCHHHHHHHSCSCCCC-----CCCCTTTSEEECCEECCCCC-CEE
T ss_pred EChH-HHHHHHHHHhhCC-CcEEEEeCC-----CCcCHHHHHhcCcccccc-----ccCCCCCCEEEEEECCCccCCCce
Confidence 9876 4444555544444 445555543 334566666554322110 011223899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH------Hh
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA------ID 431 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~------i~ 431 (486)
|+++|+++...+......+++ ..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+.+.+.+. ..
T Consensus 198 V~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~ 275 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVATGL-SHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAV 275 (549)
T ss_dssp EEEEHHHHHHHHHHHHHHHCC-CTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEEC
T ss_pred EEEcHHHHHHHHHHHHHHcCC-CCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeC
Confidence 999999999999888888888 78899999999999998866 7788999999988765 444444444431 11
Q ss_pred hhhHHHHhhhccccc--ccccccceeecCCCCCC
Q psy2842 432 RANLKSISNAQKIQK--FEFLPADFSIPTGELGP 463 (486)
Q Consensus 432 ~~~~~~l~~~~~i~~--~~l~p~~~~~~~g~ltp 463 (486)
+..+..+........ ..+........+|+..+
T Consensus 276 P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 276 PPALNVLVNTLESSNKTYDWSYLKVFATGAWPVA 309 (549)
T ss_dssp HHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCC
T ss_pred CHHHHHHHhhhhhhcccCCccceeEEEeCCccCC
Confidence 222334443332222 34455555566666544
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=229.39 Aligned_cols=265 Identities=16% Similarity=0.178 Sum_probs=180.4
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+.+++. .+++||++++++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.+
T Consensus 39 ~~A~~~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~ 114 (529)
T 2v7b_A 39 KTAYIDD----TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVY 114 (529)
T ss_dssp SEEEECS----SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHH
T ss_pred ceEEEeC----CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHH
Confidence 3456653 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCC-eEEEEecCCCCCC-CcccHHHHHHhccCCCchhhHhhhccCCCCceEE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKL-KAIVQYEGKPDKP-GVISWDELMELGRAAPDESLDRVLETIATNECCT 345 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~-~~iv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 345 (486)
+++.+++++++++++ ..+.+.......+.. ..+++.+...... ....++++......... .....++++++
T Consensus 115 ~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~a~ 187 (529)
T 2v7b_A 115 MLTHSHARAVIASGA-LVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAK------AAATGCDDIAF 187 (529)
T ss_dssp HHHHHTCSEEEEEGG-GHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSS------CCCCCTTSEEE
T ss_pred HHhccCCeEEEechh-hhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCccc------ccCCCCCCeEE
Confidence 999999999999876 344444444434444 4455444322111 12346666543221110 11345789999
Q ss_pred EEcCCCCCCCCceeEechHHH-HHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC--CChHHH
Q psy2842 346 LVYTSGTEGASKPVMLSHDNI-TFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD--KNALKV 422 (486)
Q Consensus 346 i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~--~~~~~~ 422 (486)
|+|||||||.||||+++|+++ ..........+++ .++|++++.+|++|.+++...++.++..|+++++.. .++..+
T Consensus 188 i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 266 (529)
T 2v7b_A 188 WLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI-AENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAI 266 (529)
T ss_dssp EEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCC-CTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHH
T ss_pred EEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCC-CCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHH
Confidence 999999999999999999998 4444333333455 678999999999999998888889999999999863 344455
Q ss_pred HHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 423 YKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 423 ~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
.+.+.+. ..+..+..+...+...........+...+|+..+.
T Consensus 267 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~ 314 (529)
T 2v7b_A 267 FARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPR 314 (529)
T ss_dssp HHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCH
T ss_pred HHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCH
Confidence 5555441 12233344444443333211234445556665443
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=230.94 Aligned_cols=259 Identities=15% Similarity=0.220 Sum_probs=192.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|++++++.++||+++|++++|+++..+.+++.++++.+++++++
T Consensus 105 ~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li 184 (652)
T 1pg4_A 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVI 184 (652)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred eeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH--------HHHHHHHhhcCC--CCeEEEEecCCCCC-----CCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 279 VEDDKQ--------LEKILKVKAQCP--KLKAIVQYEGKPDK-----PGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 279 ~~~~~~--------~~~~~~~~~~~~--~~~~iv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
+++... .+.+.......+ .++++++++..... .....|++++........ .....++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~ 258 (652)
T 1pg4_A 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ------PEAMNAEDP 258 (652)
T ss_dssp EESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCC------CCCEETTSE
T ss_pred EcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcCCCCC------ccccCCCCC
Confidence 987521 223333333332 45566665432111 123557776654321110 112347899
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHH-HHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-----
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAA-CIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK----- 417 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~----- 417 (486)
++|+|||||||.||||+++|+++..... .....+++ .++|++++.+|++|..|....++.+|..|+++++.+.
T Consensus 259 a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~ 337 (652)
T 1pg4_A 259 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY-HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 337 (652)
T ss_dssp EEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSS
T ss_pred EEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCC-CCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCC
Confidence 9999999999999999999999886654 34456777 6889999999999999988888999999999999763
Q ss_pred ChHHHHHHHHHH------HhhhhHHHHhhhcc--cccccccccceeecCCCCCCc
Q psy2842 418 NALKVYKATQAA------IDRANLKSISNAQK--IQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 418 ~~~~~~~~i~~~------i~~~~~~~l~~~~~--i~~~~l~p~~~~~~~g~ltpt 464 (486)
++..+.+.+.+. ..+..+..+..... .....+.+.+....+|+..+.
T Consensus 338 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 392 (652)
T 1pg4_A 338 TPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINP 392 (652)
T ss_dssp STTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCH
T ss_pred CHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCH
Confidence 445555555542 12333444444332 344556666666667765543
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=231.90 Aligned_cols=258 Identities=16% Similarity=0.193 Sum_probs=192.3
Q ss_pred ccceehhhhHhhHHHHHHHHH-HcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~-~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||+++.+++.++|..|. +.|+++|++|+++++|++++++.++||+++|++++|+++..+.+++.++++.++++++
T Consensus 111 ~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 190 (663)
T 1ry2_A 111 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVV 190 (663)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEE
Confidence 467999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChh--------HHHHHHHHhhcCCCCeEEEEecCCCC------CCCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 278 VVEDDK--------QLEKILKVKAQCPKLKAIVQYEGKPD------KPGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 278 i~~~~~--------~~~~~~~~~~~~~~~~~iv~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
++++.. ..+.+.......+.++++++++.... ......|.+++........ .....++++
T Consensus 191 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~ 264 (663)
T 1ry2_A 191 ITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYP------CTPVDSEDP 264 (663)
T ss_dssp EEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCC------CCCEETTSC
T ss_pred EEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhcCCCCC------ccccCCCCc
Confidence 998752 12344445555666777776653221 1224567776653321110 112357899
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHHH-HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-----
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK----- 417 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~----- 417 (486)
++|+|||||||.||||+++|.++...... ....+++ .++|++++.+|++|..|..+.++.+|..|+++++.+.
T Consensus 265 a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~ 343 (663)
T 1ry2_A 265 LFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT-HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYP 343 (663)
T ss_dssp CEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC-CSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSS
T ss_pred eEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC-CCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCC
Confidence 99999999999999999999998866543 4455677 6789999999999999988888999999999999764
Q ss_pred ChHHHHHHHHHH------HhhhhHHHHhhhcc--cccccccccceeecCCCCCC
Q psy2842 418 NALKVYKATQAA------IDRANLKSISNAQK--IQKFEFLPADFSIPTGELGP 463 (486)
Q Consensus 418 ~~~~~~~~i~~~------i~~~~~~~l~~~~~--i~~~~l~p~~~~~~~g~ltp 463 (486)
++..+.+.+.+. ..+..+..+..... .....+.+.+....+|+..+
T Consensus 344 ~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 397 (663)
T 1ry2_A 344 NYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIA 397 (663)
T ss_dssp CTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCC
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCC
Confidence 344555555441 12222334433322 34445555566666666544
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=228.71 Aligned_cols=255 Identities=18% Similarity=0.208 Sum_probs=188.6
Q ss_pred ccceehhhhHhhHHHHHHHHHHc-CCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~-g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||+++.++++++|..|.+. |+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.++++++
T Consensus 71 ~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 150 (570)
T 3c5e_A 71 ELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAI 150 (570)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred eeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEE
Confidence 35799999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
+++++ ..+.+..+....+.++.++..++.. .++..++++++........ .....++++++|+|||||||.||
T Consensus 151 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~d~a~i~~TSGTTG~PK 222 (570)
T 3c5e_A 151 VAGDE-VIQEVDTVASECPSLRIKLLVSEKS-CDGWLNFKKLLNEASTTHH------CVETGSQEASAIYFTSGTSGLPK 222 (570)
T ss_dssp EEETT-THHHHHHHGGGCTTCCEEEEESSSC-CTTSEEHHHHHHHSCSCCC------CCCCBTTSEEEEEECCCSSSSCC
T ss_pred EechH-HHHHHHHHhhcCCceeEEEEecccC-ccccccHHHHhhccccccc------ccCCCCCCcEEEEECCCCCCCCC
Confidence 99876 4455555566677776666665422 2244567776654332111 01345789999999999999999
Q ss_pred eeEechHHHHH-HHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC---CChHHHHHHHHHH----
Q psy2842 358 PVMLSHDNITF-NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD---KNALKVYKATQAA---- 429 (486)
Q Consensus 358 gV~~sh~~l~~-~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~---~~~~~~~~~i~~~---- 429 (486)
||+++|+.+.. ..... ..+++ ..+|++++.+|++|.+++...++.++..|+++++.. .++..+.+.+.+.
T Consensus 223 gV~~sh~~~~~~~~~~~-~~~~~-~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 223 MAEHSYSSLGLKAKMDA-GWTGL-QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp EEEEEHHHHHHHHHHHT-TTTSC-CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred EEEechHHHHhhhhhhh-hhcCC-CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 99999994332 33332 44556 678999999999999998878899999999999975 3555555554431
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+... ......+......+.+|+..+.
T Consensus 301 ~~~~P~~~~~l~~~-~~~~~~~~~lr~i~~gGe~l~~ 336 (570)
T 3c5e_A 301 MMGAPIVYRMLLQQ-DLSSYKFPHLQNCVTVGESLLP 336 (570)
T ss_dssp EEECHHHHHHHHTS-CTTTCCCTTCCEEEEESSCCCH
T ss_pred EeccHHHHHHHHhc-cccccccccceEEEEcCCcCCH
Confidence 112223334333 2333344444555566665443
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-25 Score=226.88 Aligned_cols=218 Identities=14% Similarity=0.183 Sum_probs=171.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 29 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 108 (509)
T 3ivr_A 29 GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVV 108 (509)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEE
T ss_pred CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ ..+.+.......+.+..++..++... .+.++......... ......++++++|+|||||||.|||
T Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~d~a~i~~TSGTTG~PKg 177 (509)
T 3ivr_A 109 AGTD-YRDIVAGVLPSLGGVKKAYAIGDGSG-----PFAPFKDLASDTPF-----SAPEFGAADGFVIIHTAAVGGRPRG 177 (509)
T ss_dssp ECST-THHHHHHHGGGCSSCCEEEESSCCCS-----SCEEGGGTCCCSCC-----CCCCCCTTSEEEEEEEEC--CCEEE
T ss_pred ECcc-hhhhHHhhhcccCCceEEEEcCCCCc-----ChhhHhhccCCCCC-----CcCCCCccccEEEEeCCCCCCCCcE
Confidence 9876 33333444456666766666554221 11111111111000 0123467899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCChHHHHHHHHH
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKVYKATQA 428 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~~~~~~~~i~~ 428 (486)
|+++|+++..........+++ .++|++++.+|++|.+|+...+...+..|+++++...++....+.+.+
T Consensus 178 V~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 246 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVDAWRL-TEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEA 246 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHH
T ss_pred EEEehHHHHHHHHHHHHhhCC-CCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHHHHH
Confidence 999999999999888888888 788999999999999998776666777777777775566555555544
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=230.34 Aligned_cols=251 Identities=19% Similarity=0.188 Sum_probs=183.0
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
.++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.++++++++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
+++.. +.+..+...... .+...+... ...+.+.......... .....++++++|+|||||||.||||
T Consensus 107 ~~~~~-~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~d~a~i~~TSGTTG~PKgV 173 (503)
T 4fuq_A 107 DPSKR-DGIAAIAAKVGA--TVETLGPDG----RGSLTDAAAGASEAFA------TIDRGADDLAAILYTSGTTGRSKGA 173 (503)
T ss_dssp CGGGT-TTTHHHHHHHTC--EEEECCTTS----CSHHHHHHHTSCSCCC------CCCCCTTSEEEEEECC--CCSCCEE
T ss_pred Cchhh-HHHHHHHhhcCc--eEEEecCCc----ccccchhhhcCCCCcC------cCCCCCCCeEEEEECCCcccCCeEE
Confidence 87522 222222222221 233332211 1122222211111100 1134578999999999999999999
Q ss_pred EechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHH----HHhhhh
Q psy2842 360 MLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQA----AIDRAN 434 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~----~i~~~~ 434 (486)
+++|+++.+........+++ .++|++++.+|++|.+|+...++.++..|+++++.+. ++..+++.+.+ ...+..
T Consensus 174 ~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~t~~~~~P~~ 252 (503)
T 4fuq_A 174 MLSHDNLASNSLTLVDYWRF-TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMARATVLMGVPTF 252 (503)
T ss_dssp EEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHTTCCEEEECHHH
T ss_pred EEeHHHHHHHHHHHHHHhCC-CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHhhcCEEEEHHHH
Confidence 99999999999888888888 7899999999999999877777888999999888765 54455544432 011233
Q ss_pred HHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 435 LKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 435 ~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+..+...+......+....+.+.+|+..+.
T Consensus 253 ~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 253 YTRLLQSPRLTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp HHHHHTCTTCSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHhCCCccccchhhcEEEEECCCCCCH
Confidence 455555555555555555666677765543
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=227.31 Aligned_cols=261 Identities=12% Similarity=0.134 Sum_probs=194.1
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
...+||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 84 ~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii 163 (580)
T 3etc_A 84 EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIV 163 (580)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEE
T ss_pred EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhH-HHHHHHHhhcCCCC-eEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCC
Q psy2842 279 VEDDKQ-LEKILKVKAQCPKL-KAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 356 (486)
Q Consensus 279 ~~~~~~-~~~~~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 356 (486)
++.+.. .+.+..+....+.+ ..++..++. ...+..++.+.+......... ........++++++|+|||||||.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~P 240 (580)
T 3etc_A 164 CIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLEGWIDFRKELEESSPIFER--PTGEVSTKNEDICLVYFSSGTAGFP 240 (580)
T ss_dssp EESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCTTCEEHHHHHHHSCSCCCC--CCGGGSCCTTSEEEEEEECCSSSSC
T ss_pred EecchhHHHHHHHHhhhCCCcceEEEEeCCc-cccccccHHHHHhhCCccccc--CccccCCCCCCcEEEEEeCCCCCCc
Confidence 987632 24445555555554 445555433 234667777776654332110 0001235678999999999999999
Q ss_pred ceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC---CChHHHHHHHHHH----
Q psy2842 357 KPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD---KNALKVYKATQAA---- 429 (486)
Q Consensus 357 KgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~---~~~~~~~~~i~~~---- 429 (486)
|||+++|.++...........++ .+++++++.+|++|..+.+..++.++..|+++++.+ .++..+++.+.+.
T Consensus 241 KgV~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~ 319 (580)
T 3etc_A 241 KMVEHDNTYPLGHILTAKYWQNV-EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTT 319 (580)
T ss_dssp EEEEEETTHHHHHHHHHHTTSCC-CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCE
T ss_pred cEEEeccHHHHHHHHHHHHhhCC-CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeE
Confidence 99999999988776665555666 678999999999999888777889999999998863 3555555555442
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+.. .......+.+....+.+|+..+.
T Consensus 320 ~~~~P~~~~~l~~-~~~~~~~l~~lr~i~~gGe~l~~ 355 (580)
T 3etc_A 320 FCAPPTIYRFLIK-EDLSHYNFSTLKYAVVAGEPLNP 355 (580)
T ss_dssp EEECHHHHHHHHT-SCC---CCTTCCEEEECSSCCCH
T ss_pred EEccHHHHHHHHh-cccccCCCccceEEEEccCCCCH
Confidence 11222333333 34455556666666777776554
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=225.17 Aligned_cols=215 Identities=9% Similarity=0.142 Sum_probs=173.5
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+++++. .+++||+++.++++++|..|.+.|+++|++|+++++++.++++.++|++++|++++|+++..+.+++.+
T Consensus 41 ~~Av~~~----~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~ 116 (617)
T 3rg2_A 41 SIAVIDG----ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNA 116 (617)
T ss_dssp SEEEEET----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHH
T ss_pred CeEEecC----CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHH
Confidence 4566663 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHH----HHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCce
Q psy2842 268 CLVTSDANICVVEDDKQL----EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNEC 343 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~----~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
+++.+++++++++..... .....+....+.++.+...+... ...+.+.......... .....++++
T Consensus 117 ~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~ 186 (617)
T 3rg2_A 117 YASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG----EHNLQDAINHPAEDFT------ATPSPADEV 186 (617)
T ss_dssp HHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS----TTBHHHHHHSCCSSCC------CCCCCTTSE
T ss_pred HHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc----ccchhhhhcccccccC------CCCCCCCCe
Confidence 999999999999875321 22333444555565555544321 2234444332211110 123457899
Q ss_pred EEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHH-HHHHHHHhCcEEEEcCC
Q psy2842 344 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLWFADK 417 (486)
Q Consensus 344 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~-~~~~~l~~G~tv~~~~~ 417 (486)
++|+|||||||.||||+++|+++.+.+......+++ ..++++++.+|++|.++... .++.++..|+++++.+.
T Consensus 187 a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~ 260 (617)
T 3rg2_A 187 AYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQF-TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD 260 (617)
T ss_dssp EEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS
T ss_pred EEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCC-CCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC
Confidence 999999999999999999999999999888888888 78899999999999998765 78999999999999765
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=222.33 Aligned_cols=197 Identities=18% Similarity=0.206 Sum_probs=150.8
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCC---CCCHHHHHHhhhhCCceE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT---TNSPEACLHCLVTSDANI 276 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~---~~~~~~l~~~~~~~~~~v 276 (486)
.++||+++.++++++|..|.+.|. +|++|+++++|+.++++.++|++++|++++|+++ ..+.+++.++++.+++++
T Consensus 57 ~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~ 135 (480)
T 3t5a_A 57 ITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVA 135 (480)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCE
Confidence 679999999999999999998895 9999999999999999999999999999999999 778999999999999999
Q ss_pred EEEcChhHHHHHHHHhhcCCCCe--EEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 277 CVVEDDKQLEKILKVKAQCPKLK--AIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 277 vi~~~~~~~~~~~~~~~~~~~~~--~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
++++++. .+.+.......+... .++..+..... .. . ........++++++|+|||||||
T Consensus 136 vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~--~~~~~~~~~~d~a~i~~TSGTTG 196 (480)
T 3t5a_A 136 ILTTSSA-VDDVVQHVARRPGESPPSIIEVDLLDLD---------------AP-N--GYTFKEDEYPSTAYLQYTSGSTR 196 (480)
T ss_dssp EEECTTT-HHHHHHTCC------CCEEEEGGGSCTT---------------CC------CCCCSSCCSEEEEECC-----
T ss_pred EEeChhH-HHHHHHHHhccccccccceeEecccccc---------------cc-c--CCCCCCCCCCceEEEEecCCCCC
Confidence 9998763 333333332222211 22322211100 00 0 01112345789999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCC------CeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESA------ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~------~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
.||||+++|+++..++......+.. .. ++++++.+|++|.+|+...++.++..|+++++.++
T Consensus 197 ~PKgV~~th~~l~~~~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~ 264 (480)
T 3t5a_A 197 TPAGVVMSHQNVRVNFEQLMSGYFA-DTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSP 264 (480)
T ss_dssp -CCCEEEEHHHHHHHHHHHHHHHCT-TTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCH
T ss_pred CCcEEEEeHHHHHHHHHHHHHHhcc-ccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECH
Confidence 9999999999999988888877776 44 89999999999999998899999999999999864
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-24 Score=220.03 Aligned_cols=242 Identities=15% Similarity=0.190 Sum_probs=172.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||++++++++++|..|.+.|++++++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 24 ~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i 103 (512)
T 3fce_A 24 DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLL 103 (512)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEE
T ss_pred CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++.... .......+.. ...+.++......... .......++++++|+|||||||.|||
T Consensus 104 ~~~~~~----------~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~i~~TSGTTG~PKg 161 (512)
T 3fce_A 104 SATAVT----------VTDLPVRIVS--------EDNLKDIFFTHKGNTP----NPEHAVKGDENFYIIYTSGSTGNPKG 161 (512)
T ss_dssp ESSCCC----------SSCCSSEEEE--------THHHHHHHHHTTTCCC----CGGGSCCTTSEEEEEEECC----CEE
T ss_pred ecCccc----------ccccccceec--------hhhhhhhcccccccCC----CccccCCCCCeEEEEECCCCCCCCce
Confidence 875411 0111101110 1112222222211111 01124567899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC----ChHHHHHHHHHH-----
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK----NALKVYKATQAA----- 429 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~----~~~~~~~~i~~~----- 429 (486)
|+++|+++..........+++ .++|++++.+|++|..++ ..++.++..|+++++.+. ++..+.+.+.+.
T Consensus 162 v~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~ 239 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVEDFNL-QTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVW 239 (512)
T ss_dssp EEEEHHHHHHHHHHHHHHTTC-CSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEE
T ss_pred EEEehHHHHHHHHHHHHhcCC-CCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEE
Confidence 999999999998888888888 789999999999999986 468899999999999875 333333333321
Q ss_pred -HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 430 -IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 -i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+..........+......+.+|+..+.
T Consensus 240 ~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~ 275 (512)
T 3fce_A 240 TSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPN 275 (512)
T ss_dssp EECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCH
T ss_pred EecHHHHHHHHhhccccchhCccccEEEEecCcCCH
Confidence 01122233333333344444445555566665443
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=227.58 Aligned_cols=248 Identities=18% Similarity=0.171 Sum_probs=176.7
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCC---CHHHHHHhhhhCCce
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---SPEACLHCLVTSDAN 275 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~---~~~~l~~~~~~~~~~ 275 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|++|.. ..+++.+++..++++
T Consensus 38 ~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~ 117 (590)
T 3kxw_A 38 EETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPV 117 (590)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCS
T ss_pred eEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999988 457889999999999
Q ss_pred EEEEcChhHHHHHHHHh-hcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCC
Q psy2842 276 ICVVEDDKQLEKILKVK-AQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEG 354 (486)
Q Consensus 276 vvi~~~~~~~~~~~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 354 (486)
+++++.+. ...+.... ...+....+..... +.+.... ..........++++++|+|||||||
T Consensus 118 ~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~~~d~a~i~~TSGTTG 180 (590)
T 3kxw_A 118 IVLMIADH-IKKFTADELNTNPKFLKIPAIAL----------ESIELNR------SSSWQPTSIKSNDIAFLQYTSGSTM 180 (590)
T ss_dssp EEEECHHH-HHHHCC-----CCEETTEEEEEG----------GGCCGGG------GGGCCCCCCCTTSEEEEEECSSCSS
T ss_pred EEEeCHHH-HHHHHHhhhhhcccccccceeec----------hhccccc------cccCCCCCCCCCCeEEEEeCcCCCC
Confidence 99987652 22211111 11111111111110 0000000 0000112346789999999999999
Q ss_pred CCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-----ChHHHHHHHHHH
Q psy2842 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-----NALKVYKATQAA 429 (486)
Q Consensus 355 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-----~~~~~~~~i~~~ 429 (486)
.||||+++|+++...+......+++ .+++++++++|++|.+|+...++.++..|+++++.++ ++..+++.+.+.
T Consensus 181 ~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~ 259 (590)
T 3kxw_A 181 HPKGVMVSHHNLLDNLNKIFTSFHM-NDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKY 259 (590)
T ss_dssp SCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHH
T ss_pred CceEEEeeHHHHHHHHHHHHHhhCC-CCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHh
Confidence 9999999999999999988888888 7899999999999999987778999999999999865 333444444331
Q ss_pred Hh------hhhHHHHhhh---cccccccccccceeecCCCCCCc
Q psy2842 430 ID------RANLKSISNA---QKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 i~------~~~~~~l~~~---~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
-. +..+..+... +......+.+....+.+|+..+.
T Consensus 260 ~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~ 303 (590)
T 3kxw_A 260 KATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVRE 303 (590)
T ss_dssp TCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCH
T ss_pred CCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCH
Confidence 10 1111222221 33444455566666677765553
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=238.30 Aligned_cols=267 Identities=19% Similarity=0.242 Sum_probs=193.0
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
..+++.++ ...+||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|++|..+++++.++
T Consensus 78 ~Al~~~~~--~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~ 155 (979)
T 3tsy_A 78 PCLINGPT--GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155 (979)
T ss_dssp EEEEETTT--CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHH
T ss_pred eEEEECCC--CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHH
Confidence 44554322 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCC---CCCcccHHHHHHhccCCCchhhHhhhccCCCCceEE
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDRVLETIATNECCT 345 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 345 (486)
++.+++++++++++ ..+.+..+.... .. .++..++... ..+..++.++....... ..........++++++
T Consensus 156 l~~~~~~~vi~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~ 229 (979)
T 3tsy_A 156 AKASNTKLIITEAR-YVDKIKPLQNDD-GV-VIVCIDDNESVPIPEGCLRFTELTQSTTEA---SEVIDSVEISPDDVVA 229 (979)
T ss_dssp HHHHTEEEEEECST-TTTTSHHHHHTS-CC-EEEECCCCTTSCCCTTEEEGGGTSSCCSGG---GGGSCCSCCCTTSEEE
T ss_pred HHHcCCeEEEEChH-HHHHHHHHhhcC-Cc-eEEEeCCcccccCCcccccHHHHhhccccc---cccCCcCCCCccceEE
Confidence 99999999999875 222222222222 22 2344433211 12344454443322110 0011112356899999
Q ss_pred EEcCCCCCCCCceeEechHHHHHHHHHHHHH----ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChH
Q psy2842 346 LVYTSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NAL 420 (486)
Q Consensus 346 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~ 420 (486)
|+|||||||.||||+++|+++...+...... +.+ .+++++++.+|++|.+++...++.++..|+++++.+. ++.
T Consensus 230 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~ 308 (979)
T 3tsy_A 230 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEIN 308 (979)
T ss_dssp CCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCC-CSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHH
T ss_pred EEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccC-CCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHH
Confidence 9999999999999999999999877665432 234 6789999999999999998888999999999999865 444
Q ss_pred HHHHHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 421 KVYKATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 421 ~~~~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
.+.+.+.+. ..+..+..+...+......+....+.+.+|+..+.
T Consensus 309 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~ 358 (979)
T 3tsy_A 309 LLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGK 358 (979)
T ss_dssp HHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCS
T ss_pred HHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCH
Confidence 455554442 12333455555555566666666777777876654
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=221.15 Aligned_cols=247 Identities=14% Similarity=0.176 Sum_probs=174.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 27 ~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 106 (504)
T 1t5h_X 27 GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV 106 (504)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred E--cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCC-chhhHhhhccCCCCceEEEEcCCCCCCC
Q psy2842 279 V--EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP-DESLDRVLETIATNECCTLVYTSGTEGA 355 (486)
Q Consensus 279 ~--~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 355 (486)
+ +++ ..+.+ ....+.++ ++. ++++........ ..... .....++++++|+|||||||.
T Consensus 107 ~~~~~~-~~~~~---~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~ 167 (504)
T 1t5h_X 107 IAVGRQ-VADAI---FQSGSGAR-IIF------------LGDLVRDGEPYSYGPPIE--DPQREPAQPAFIFYTSGTTGL 167 (504)
T ss_dssp ECC--C-HHHHH---HHHCCCCE-EEE------------GGGTEETTEECCCSCCCC--CCCCCTTSEEEEEECCC---C
T ss_pred Eecchh-hhhhh---hhccccce-eEE------------ecchhhcCcccccCCccC--CCCCCCCCeEEEEeCCCCCCC
Confidence 8 554 22222 11222332 221 111111100000 00000 013457899999999999999
Q ss_pred CceeEechHHHHHHHHHHHHHccCC-CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHHH----
Q psy2842 356 SKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQAA---- 429 (486)
Q Consensus 356 PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~~---- 429 (486)
||||+++|+++.+........+++. ..++++++.+|++|.+|+...++.++..|+++++.+. ++..+.+.+.+.
T Consensus 168 PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~ 247 (504)
T 1t5h_X 168 PKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247 (504)
T ss_dssp CCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCE
T ss_pred CCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeE
Confidence 9999999999998888777766652 4678999999999999987788999999999999765 444555555442
Q ss_pred --HhhhhHHHHhhhc-c-cccccccccceeecCCCCCCc
Q psy2842 430 --IDRANLKSISNAQ-K-IQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 430 --i~~~~~~~l~~~~-~-i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+..+..+.... . .....+.+....+.+|+..+.
T Consensus 248 ~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~ 286 (504)
T 1t5h_X 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPD 286 (504)
T ss_dssp EECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCH
T ss_pred EEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCH
Confidence 1233344444433 1 233445555666667765554
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=218.73 Aligned_cols=195 Identities=18% Similarity=0.226 Sum_probs=151.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 62 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 62 NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++. ... .........+......... ..... .......++++++|+|||||||.|||
T Consensus 142 ~~~~~-~~~----~~~~~~~~~~~~~~~~~~~-----------~~~~~------~~~~~~~~~d~a~i~~TSGTTG~PKg 199 (563)
T 1amu_A 142 TQKHL-VHL----IHNIQFNGQVEIFEEDTIK-----------IREGT------NLHVPSKSTDLAYVIYTSGTTGNPKG 199 (563)
T ss_dssp ECGGG-HHH----HTTSCCCSEEEECCCSTTT-----------TSCCS------CCCCCCCTTSEEEEEEEC-----CEE
T ss_pred EcCch-hhh----hhhccccCceeeecchhhc-----------cccCc------cCCCCCCCCCeEEEEECCCCCCCCcE
Confidence 98752 211 1122211223332221100 00000 00112357899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++.+........+++ .++|++++.+|++|..+. ..++.++..|+++++.+.
T Consensus 200 V~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 200 TMLEHKGISNLKVFFENSLNV-TEKDRIGQFASISFDASV-WEMFMALLTGASLYIILK 256 (563)
T ss_dssp EEEESHHHHHHHHHHHHTSCC-CTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCH
T ss_pred EEEehHHHHHHHHHHHHhcCC-CCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcCh
Confidence 999999999888877777777 688999999999999886 467889999999999765
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=216.34 Aligned_cols=239 Identities=18% Similarity=0.188 Sum_probs=176.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHc-CCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~-g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
..++||++++++++++|..|.+. |.+++++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.++++++
T Consensus 24 ~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l 103 (511)
T 3e7w_A 24 GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELL 103 (511)
T ss_dssp TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEE
T ss_pred CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEE
Confidence 47899999999999999999774 77889999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCc
Q psy2842 278 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 357 (486)
Q Consensus 278 i~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 357 (486)
++++... ..... ......++.++......... ......++++++|+|||||||.||
T Consensus 104 i~~~~~~-------~~~~~------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~PK 159 (511)
T 3e7w_A 104 IHAAGLS-------IDAVG------------QQIQTVSAEELLENEGGSVS-----QDQWVKEHETFYIIYTSGSTGNPK 159 (511)
T ss_dssp EESSSCC-------TTCCC------------CSSCEEEHHHHHTSCSCCCC-----GGGSCCTTSEEEEEEECCTTSSCE
T ss_pred Eeccccc-------chhcc------------cccceecHhhhhccccCCcc-----ccccCCCCCeEEEEECCCCCCCCC
Confidence 9865411 00000 00123344555443322111 112346789999999999999999
Q ss_pred eeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCCC----hHHHHHHHHHH----
Q psy2842 358 PVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN----ALKVYKATQAA---- 429 (486)
Q Consensus 358 gV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~~----~~~~~~~i~~~---- 429 (486)
||+++|+++..........+++ ..++++++.+|++|..++ ..++.++..|+++++.+.. +..+.+.+.+.
T Consensus 160 gV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 160 GVQISAANLQSFTDWICADFPV-SGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEEHHHHHHHHHHHHHHSTT-TTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEEcHHHHHHHHHHHHHhcCC-CccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 9999999999999888888888 788999999999999886 5688999999999998652 23333333321
Q ss_pred --HhhhhHHHHhhhcccccccccccceeecCCCCCC
Q psy2842 430 --IDRANLKSISNAQKIQKFEFLPADFSIPTGELGP 463 (486)
Q Consensus 430 --i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltp 463 (486)
..+..+..+...+......+......+.+|+..+
T Consensus 238 ~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~ 273 (511)
T 3e7w_A 238 WTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLP 273 (511)
T ss_dssp EEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCC
T ss_pred EEecHHHHHHHHhccccccccCCcccEEEEecCCCC
Confidence 1122233444444444444444455556665444
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=209.58 Aligned_cols=228 Identities=16% Similarity=0.143 Sum_probs=159.4
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+.+++. ..++||++++++++++|..|.+. +|++|+++++|+.++++.++|++++|++++|+++..+.+++.+
T Consensus 17 ~~Al~~~----~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~ 89 (501)
T 3ipl_A 17 HIAITDG----QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTN 89 (501)
T ss_dssp SEEEECS----SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHH
T ss_pred ceEEEeC----CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHH
Confidence 3456653 46899999999999999999775 6999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEe---cCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY---EGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 344 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 344 (486)
+++.+++++++++++.... .... .....+..+... .+.........+.......... ............+++++
T Consensus 90 ~l~~~~~~~li~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a 166 (501)
T 3ipl_A 90 QMRSIDVQLIFCTLPLELR-GFQI-VSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPK-ESPSNILNTSFNLDDIA 166 (501)
T ss_dssp HHHHTTCCEEEESSCCCCT-TSEE-EETTC---------------------------------CCHHHHTCCCCCTTSEE
T ss_pred HHHhcCCCEEEEccccccc-cccc-cccccceeeeeecccccccccccccccccchhhcccc-CCcccccccCCCCCCeE
Confidence 9999999999998652110 0000 000111100000 0000000000000000000000 00011112235688999
Q ss_pred EEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHH
Q psy2842 345 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVY 423 (486)
Q Consensus 345 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~ 423 (486)
+|+|||||||.||||+++|+++..........+++ .+++++++.+|++|.+|+.. ++.++..|+++++.+. ++..+.
T Consensus 167 ~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~ 244 (501)
T 3ipl_A 167 SIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGF-DRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIVDKFNAEQIL 244 (501)
T ss_dssp EEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCC-CTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHH
T ss_pred EEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCC-CccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeCCCCCHHHHH
Confidence 99999999999999999999999998888888888 78899999999999999865 7889999999999876 444444
Q ss_pred HHHH
Q psy2842 424 KATQ 427 (486)
Q Consensus 424 ~~i~ 427 (486)
+.+.
T Consensus 245 ~~i~ 248 (501)
T 3ipl_A 245 TMIK 248 (501)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-23 Score=216.34 Aligned_cols=193 Identities=16% Similarity=0.168 Sum_probs=150.8
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
+.+++. .+++||+++.++++++|..|.+.|+++|++|+++++++.++++.++|++++|+.++|++|..+.+++.++
T Consensus 44 ~Av~~~----~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~i 119 (620)
T 4dg8_A 44 EAIRDR----FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAEL 119 (620)
T ss_dssp EEEEET----TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHH
T ss_pred eEEEcC----CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHH
Confidence 445553 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEc
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY 348 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 348 (486)
++.++++++++.+... ........+ ...... .... ........++++++|+|
T Consensus 120 l~~~~~~~vl~~~~~~--------~~~~~~~~~-~~~~~~----------------~~~~---~~~~~~~~~~d~a~iiy 171 (620)
T 4dg8_A 120 CRQVDCRLILDCSTTP--------TPANGLPCV-PVRHLP----------------AAPA---SVARPCFAADQIAYINF 171 (620)
T ss_dssp HHHHTEEEEEECCSSC--------CCCTTSCEE-EGGGCC----------------CCCC---CSSCCCCCTTSEEEEEE
T ss_pred HHhCCCcEEEecCccc--------ccccCCcee-eeccCC----------------cCCc---cccCCCCCCCCeEEEEE
Confidence 9999999999665410 011111111 110000 0000 00011235789999999
Q ss_pred CCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcC
Q psy2842 349 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416 (486)
Q Consensus 349 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~ 416 (486)
||||||.||||+++|+++.+.... ...+++ .++++++..+|++|..+. ..++.++..|+++++.+
T Consensus 172 TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~ 236 (620)
T 4dg8_A 172 SSGTTGRPKAIACTHAGITRLCLG-QSFLAF-APQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLND 236 (620)
T ss_dssp EBSSSSSCEEEEEEHHHHHHHHSS-CGGGTT-CTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECC
T ss_pred CCCccccCeEEEEchHHHHHHHHH-HHhhCC-CCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCc
Confidence 999999999999999999766544 334555 678999999999998886 56899999999999964
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=216.12 Aligned_cols=201 Identities=14% Similarity=0.152 Sum_probs=154.4
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 98 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 177 (570)
T 4gr5_A 98 ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLV 177 (570)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++ .....+....++..+.... .... ........++++++|+|||||||.|||
T Consensus 178 ~~~~--------~~~~~~~~~~~~~~~~~~~------------~~~~------~~~~~~~~~~d~a~i~~TSGTTG~PKg 231 (570)
T 4gr5_A 178 TSRP--------LSGRLTGTTTLYVEDEAAS------------DAPA------GNLATGVGPEDVACVMFTSGSTGRPKG 231 (570)
T ss_dssp ECTT--------TTTSSCSSEEEECCC-------------------C------CCCCCCCCTTSEEEEECCSSCCSSCCC
T ss_pred ecch--------hhhcccCCcceeeeccccc------------cccc------cccCCCCCCCCeEEEEECCcCCCCCeE
Confidence 9875 2233333333322111100 0000 001123457899999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC---ChHHHHHHHHH
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK---NALKVYKATQA 428 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~---~~~~~~~~i~~ 428 (486)
|+++|+++...... ...+++ .+++++++.+|++|..+. ..++.++..|+++++.+. ++..+.+.+.+
T Consensus 232 V~~th~~l~~~~~~-~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~ 301 (570)
T 4gr5_A 232 VMSPHRALTGTYLG-QDYAGF-GPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVAR 301 (570)
T ss_dssp EEEEHHHHHHHHSS-CCSSCC-STTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHHHH
T ss_pred EEEecHHHHHHHHh-hhhcCC-CCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHHHH
Confidence 99999998765433 223344 678999999999986554 578889999999998753 44444444443
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-22 Score=206.49 Aligned_cols=193 Identities=16% Similarity=0.191 Sum_probs=149.8
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 27 ~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 27 GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++. ....... ....+.++........+ ........++++++|+|||||||.|||
T Consensus 107 ~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKg 162 (521)
T 3l8c_A 107 AIEEF--------PLTIEGI-------------SLVSLSEIESAKLAEMP---YERTHSVKGDDNYYIIFTSGTTGQPKG 162 (521)
T ss_dssp ESSCC--------CSCCTTS-------------EEEEHHHHHHHHHHTCC---CCCSSCCCTTSEEEEEECCC---CCCE
T ss_pred ecCcc--------ccccccC-------------cccchhhhhhcccccCC---cccCCCCCCCCcEEEEEcCCCCCCCCE
Confidence 97651 1111111 11222222221100000 001123467899999999999999999
Q ss_pred eEechHHHHHHHHHHHHH--ccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQY--FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~--~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++.......... ++. ..++++++..|++|..+. ..++.++..|+++++.+.
T Consensus 163 V~~sh~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 163 VQISHDNLLSFTNWMIEDAAFDV-PKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPK 221 (521)
T ss_dssp EEEEHHHHHHHHHHHHHCTTTCC-CSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCG
T ss_pred EEEehHHHHHHHHHHhhccccCC-CCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCH
Confidence 999999999877766655 444 678899999999998775 567888999999998765
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-23 Score=210.85 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=153.3
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+++++. .+++||+++.++++++|..|. .+++|+++++|+.++++.++|++++|++++|++|..+.+++.+
T Consensus 39 ~~Al~~~----~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~ 109 (505)
T 3nyq_A 39 RPALRFG----ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109 (505)
T ss_dssp SEEEEET----TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHH
T ss_pred CeEEEEC----CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHH
Confidence 4566653 578999999999999988774 2789999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLV 347 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 347 (486)
+++.+++++++++++.. .......+..+. ....... .. ......++++++|+
T Consensus 110 il~~~~~~~vi~~~~~~------~~~~~~~~~~~~-~~~~~~~--------------~~-------~~~~~~~~d~a~i~ 161 (505)
T 3nyq_A 110 ILSDSAPSLVLAPPDAE------LPPALGALERVD-VDVRARG--------------AV-------PEDGADDGDPALVV 161 (505)
T ss_dssp HHHHHCCSEEEECTTCC------CCGGGTTSEEEE-CCTTCCC--------------CC-------CCCCCCTTSEEEEE
T ss_pred HHHHCCCCEEEECCccc------cchhhccccccc-ccccccc--------------CC-------CCCCCCCCCeEEEE
Confidence 99999999999986521 111122232221 1111000 00 01134578999999
Q ss_pred cCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 348 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|||||||.||||+++|+++..........+++ .++|++++.+|++|.+|+...++.++..|+++++.+.
T Consensus 162 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 230 (505)
T 3nyq_A 162 YTSGTTGPPKGAVIPRRALATTLDALADAWQW-TGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230 (505)
T ss_dssp EECCSSSSCEEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSS
T ss_pred eCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCC-CCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence 99999999999999999999999888888888 7889999999999999998889999999999998865
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=224.19 Aligned_cols=201 Identities=20% Similarity=0.228 Sum_probs=154.5
Q ss_pred eEEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHH
Q psy2842 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 188 ~~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
.+++++. .+++||+++.++++++|..|.+.|+++|++|+++++++.++++.++|++++|+.+||++|..+.+++.+
T Consensus 480 ~~Av~~~----~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~ 555 (1304)
T 2vsq_A 480 APALTYS----GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISY 555 (1304)
T ss_dssp SEEEESS----SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHH
T ss_pred CeEEEEC----CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHH
Confidence 3556653 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEE
Q psy2842 268 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLV 347 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 347 (486)
+++.+++++++++.+.. ......+.....+..++.. .+ ...... ......++++|+|+
T Consensus 556 il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~----~~~~~~-------~~~~~~~~~~ayii 613 (1304)
T 2vsq_A 556 MLADSAAACLLTHQEMK-----EQAAELPYTGTTLFIDDQT------RF----EEQASD-------PATAIDPNDPAYIM 613 (1304)
T ss_dssp HHHHHTCCEEEECSTTC-----TTSTTCCCCSEEEESSCGG------GG----GSCSSC-------CCCCCCTTSEEEEE
T ss_pred HHHHcCCCEEEECcchh-----hhhhccCCCCcEEEecccc------cc----ccccCC-------CCCCCCCCCeEEEE
Confidence 99999999999986521 0111122222233322110 00 000000 01134578999999
Q ss_pred cCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 348 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 348 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|||||||+||||+++|+++.+. ......+++ .++++++...|++|..+ .+.++.++..|+++++.+.
T Consensus 614 yTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~-~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 614 YTSGTTGKPKGNITTHANIQGL-VKHVDYMAF-SDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp EECCSSSSCEEEEEEHHHHHHH-HSSCCSSCC-CTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCG
T ss_pred eCCCCCCCCCEEEEehHHHHHH-HHHHHhcCC-CCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECCh
Confidence 9999999999999999999864 322333455 67899999999988665 4688999999999999875
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=193.71 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=147.2
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
..++||+++.++++++|..|.+.|+ +|++|+++++|+.++++.++|++++|++++|+++..+.+++.++++.+++++++
T Consensus 53 ~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i 131 (562)
T 3ite_A 53 TEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAF 131 (562)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEE
Confidence 3679999999999999999998898 799999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++++... ....+....++.. ....+.+......... .......+++++|+|||||||.|||
T Consensus 132 ~~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------~~~~~~~~~~a~i~~TSGTTG~PKg 192 (562)
T 3ite_A 132 VCDNNFD------GVELPPETKVLDT-------KNQSFIENLSTQDTSD------ILNNYPENLDAYLLYTSGSTGTPKG 192 (562)
T ss_dssp ECTTTTT------TCCCCTTCEEEET-------TCHHHHHHHHHSCCSC------CCCCCCTTSEEEEEEECC---CCEE
T ss_pred Ecccccc------ccccCccceeecc-------cchhhhhhcccccccc------cccCCCCCCcEEEEECCCCCCCCcE
Confidence 8765211 0011111112211 1112222222221111 0123456788999999999999999
Q ss_pred eEechHHHHHHHHHHHHHc--------cCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYF--------KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~--------~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|+++..........+ .+ ...+++++..|++|..+. ..++.++..|+++++...
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~ 257 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLEL-GGVGKFLCLASRAFDVHI-GEMFLAWRFGLCAVTGER 257 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGC-TTTCEEECCSCTTSTHHH-HHHHHHHHTTCEEEECCH
T ss_pred EEECchhHHHHHHHHHhhhccccchhccc-CcCceEEEecCchhhhhH-HHHHHHHhcccEEEecch
Confidence 9999999988776655432 23 567899999999987765 567889999999998754
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-21 Score=203.98 Aligned_cols=155 Identities=21% Similarity=0.295 Sum_probs=128.1
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCCCCcCccccccCCceEEEEC-CCCC--
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD-PDEE-- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d-~~~~-- 197 (486)
..+++++|.+++||+++++++.+++++ + ++.++++||+||+++.++.......+.+++|+|+|+++++|+| +++.
T Consensus 305 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 384 (548)
T 2d1s_A 305 KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL 384 (548)
T ss_dssp GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBC
T ss_pred cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccC
Confidence 345689999999999999999999988 7 7889999999999887766554456789999999999999999 4443
Q ss_pred ---Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 ---GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ---~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|.. |+|.+.|+.
T Consensus 385 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~--v~p~eIE~~ 459 (548)
T 2d1s_A 385 GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEG---WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQ--VPPAELESV 459 (548)
T ss_dssp CTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS---CEEEEEEEEECTTCCEEEEEEGGGCBCBTTCC--BCHHHHHHH
T ss_pred CCCCCeEEEECCHHHhhhhcCChHHhhhcccCCc---EEEccCEEEEcCCCeEEEeccccceEEECCEE--ECHHHHHHH
Confidence 56888875 79999999999996666 99999999999999888888 67788888 577777777
Q ss_pred HHHhhhhCCceEEEEcCh
Q psy2842 265 CLHCLVTSDANICVVEDD 282 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~ 282 (486)
+..+..+.++.++..+++
T Consensus 460 l~~~p~V~~a~V~~~~~~ 477 (548)
T 2d1s_A 460 LLQHPSIFDAGVAGVPDP 477 (548)
T ss_dssp HHTSTTEEEEEEEEEEET
T ss_pred HHhCCCccEEEEEEEEcC
Confidence 776666666666666543
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-21 Score=203.27 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=121.2
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCc-eEEEECCCCC---
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGT-QTKIVDPDEE--- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~-~~~i~d~~~~--- 197 (486)
.++++||.+++||+++++++.+++++ +|++++++||+||++..++..... ....+++|+|+++. +++|+|+++.
T Consensus 295 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~ 374 (539)
T 1mdb_A 295 DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374 (539)
T ss_dssp CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCC
T ss_pred CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCc
Confidence 45689999999999999999999987 899999999999965433321111 12457999999764 8999998765
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC 265 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l 265 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+.+
T Consensus 375 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l 449 (539)
T 1mdb_A 375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDG---FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEK--VAAEEVENHL 449 (539)
T ss_dssp TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEEGGGCEECSSCE--ECHHHHHHHH
T ss_pred CCCcceEEeeCcccchhhcCChhhhhhhccCCC---CeecCceEEECCCCcEEEeccccceEEECCEE--ECHHHHHHHH
Confidence 56888864 89999999999997677 99999999999999988888 67788888 5666666666
Q ss_pred HHhhhhCCceEEEEcC
Q psy2842 266 LHCLVTSDANICVVED 281 (486)
Q Consensus 266 ~~~~~~~~~~vvi~~~ 281 (486)
..+..+.++.++..++
T Consensus 450 ~~~p~V~~a~vv~~~~ 465 (539)
T 1mdb_A 450 LAHPAVHDAAMVSMPD 465 (539)
T ss_dssp TTSTTEEEEEEEEEEE
T ss_pred HhCCCcceEEEEeccc
Confidence 6666666666665554
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-21 Score=202.05 Aligned_cols=161 Identities=23% Similarity=0.318 Sum_probs=106.0
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CCCc-eeccccccccccccccCCCCCCCcCccccccCCceEEEECCCC-C-
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LDIP-ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDE-E- 197 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~-i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~-~- 197 (486)
...++++||.+++||+++++++.+++.+ ++.. ++++||+||+++.++.......+.+++|+|+|+++++|+|+++ .
T Consensus 302 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~ 381 (550)
T 3rix_A 302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT 381 (550)
T ss_dssp GGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCB
T ss_pred cccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcC
Confidence 3456789999999999999999999988 8876 9999999999988887777777889999999999999999643 2
Q ss_pred ----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHH
Q psy2842 198 ----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPE 263 (486)
Q Consensus 198 ----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~ 263 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+
T Consensus 382 ~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~ 456 (550)
T 3rix_A 382 LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG---WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQ--VAPAELES 456 (550)
T ss_dssp CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS---CEEEEEEEEECTTCCEEEC-----------------------
T ss_pred CCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCC---CeecCcEEEEeCCceEEEEecchheeEECCEE--ECHHHHHH
Confidence 56888875 89999999999987677 99999999999999998888 78889998 79999999
Q ss_pred HHHHhhhhCCceEEEEcChhHHHH
Q psy2842 264 ACLHCLVTSDANICVVEDDKQLEK 287 (486)
Q Consensus 264 ~l~~~~~~~~~~vvi~~~~~~~~~ 287 (486)
.+..+..+.++.++..+++...+.
T Consensus 457 ~l~~~p~V~~a~vv~~~~~~~g~~ 480 (550)
T 3rix_A 457 ILLQHPNIFDAGVAGLPDDDAGEL 480 (550)
T ss_dssp ------------------------
T ss_pred HHHhCCCcceEEEEEeecCCCCce
Confidence 999999999999998887654443
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-21 Score=203.88 Aligned_cols=153 Identities=18% Similarity=0.288 Sum_probs=132.8
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
.++++||.+++||+++++++.++|.+ +|++++++||+||++..++..+....+++++|+|+|+++++|+|+++.
T Consensus 338 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g 417 (580)
T 3etc_A 338 YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVG 417 (580)
T ss_dssp -CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTT
T ss_pred CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCC
Confidence 45689999999999999999999988 799999999999998777666655668899999999999999998875
Q ss_pred Cccceehh-----------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 GNGEICLK-----------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 ~~gel~~~-----------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.|||+++ +|+++++.+++.|. +| |++|||++..+.++++.++| +++.+|.. |+|.+.|
T Consensus 418 ~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~g---wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~--I~p~eIE 491 (580)
T 3etc_A 418 EEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DG---YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYK--VGPFEVE 491 (580)
T ss_dssp CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TT---EEEEEEEEEECTTSCEEEEEESSSCEEETTEE--ECHHHHH
T ss_pred CceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CC---EEecCcEEEECCCCcEEEEecCCCEEEECCEE--ECHHHHH
Confidence 56888764 79999999999994 56 99999999999999999988 78889988 6888888
Q ss_pred HHHHHhhhhCCceEEEEcCh
Q psy2842 263 EACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~~ 282 (486)
..+..+..+.++.++..+++
T Consensus 492 ~~l~~~p~V~~a~Vvg~~~~ 511 (580)
T 3etc_A 492 SALIQHPAVLECAITGVPDP 511 (580)
T ss_dssp HHHTTSTTEEEEEEEEEEET
T ss_pred HHHHhCCCeeeEEEEeeecc
Confidence 88888888888888877765
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-20 Score=194.12 Aligned_cols=155 Identities=23% Similarity=0.347 Sum_probs=130.6
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccC-----CCCCCCcCccccccCCceEEEECCC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVS-----APDDFKLDGVGRTIPGTQTKIVDPD 195 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~-----~~~~~~~~s~G~p~p~~~~~i~d~~ 195 (486)
..++++||.+++||+++++++.+++++ + ++.++++||+||+++.++.. .+...+++++|+|+|+++++|+|++
T Consensus 293 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~ 372 (536)
T 3ni2_A 293 KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPE 372 (536)
T ss_dssp GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTT
T ss_pred cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCC
Confidence 456689999999999999999999988 7 89999999999998765543 2234478999999999999999954
Q ss_pred -CC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 196 -EE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 196 -~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
+. +.||++++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|.. |+|.
T Consensus 373 ~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~p~ 447 (536)
T 3ni2_A 373 TGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEG---WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQ--VAPA 447 (536)
T ss_dssp TCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEECSCCEEETTEE--ECHH
T ss_pred CCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCC---ceEcccEEEEcCCceEEEEecccceEEECCEE--ECHH
Confidence 33 56888875 89999999999997667 99999999999999999988 77889988 6888
Q ss_pred CCHHHHHHhhhhCCceEEEEcCh
Q psy2842 260 NSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.|+.+..+..+.++.++..+++
T Consensus 448 eIE~~l~~~p~V~~a~Vv~~~~~ 470 (536)
T 3ni2_A 448 ELEALLIAHPEISDAAVVGLKDE 470 (536)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEET
T ss_pred HHHHHHHhCCCcceEEEEeeecC
Confidence 88888877777778877777654
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-20 Score=190.66 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=130.2
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEEC-CCCC-----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVD-PDEE----- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d-~~~~----- 197 (486)
.++++|.+++||+++++++.+.|.+ +|+.++++||+||++..++.........+++|+|+|+++++|+| +++.
T Consensus 266 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g 345 (503)
T 4fuq_A 266 TTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRG 345 (503)
T ss_dssp TTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTT
T ss_pred chhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCC
Confidence 4589999999999999999999988 79999999999999877654444456789999999999999999 4443
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH 267 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~ 267 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+.+..
T Consensus 346 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~ 420 (503)
T 4fuq_A 346 DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDG---FFITGDLGKIDERGYVHILGRGKDLVITGGFN--VYPKEIESEIDA 420 (503)
T ss_dssp CCEEEEEESTTSCCCBTTCHHHHHHTBCTTS---CEEEEEEEEECTTCEEEECCSSTTCEEETTEE--ECHHHHHHHHHT
T ss_pred CceEEEEECCchhhhhcCChhhhHhhhCCCC---CeEcceeEEEcCCCcEEEEecCCCEEEECCEE--ECHHHHHHHHHh
Confidence 56888875 89999999999997777 99999999999999998888 77889988 678888888877
Q ss_pred hhhhCCceEEEEcCh
Q psy2842 268 CLVTSDANICVVEDD 282 (486)
Q Consensus 268 ~~~~~~~~vvi~~~~ 282 (486)
+..+.++.++.++++
T Consensus 421 ~p~V~~a~vv~~~~~ 435 (503)
T 4fuq_A 421 MPGVVESAVIGVPHA 435 (503)
T ss_dssp STTEEEEEEEEEEET
T ss_pred CCCeeEEEEEEeEch
Confidence 777778877777654
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-20 Score=193.65 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=128.7
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
.++++||.+++||+++++++.++|++ +|++++++||+||++..++.......+.+++|+|+|+++++|+|+++.
T Consensus 319 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G 398 (570)
T 3c5e_A 319 YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPG 398 (570)
T ss_dssp CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTT
T ss_pred cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEECCCCCCCCCC
Confidence 34589999999999999999999988 799999999999998776655444557899999999999999998765
Q ss_pred Cccceehh-----------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 GNGEICLK-----------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 ~~gel~~~-----------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.|||+++ ||+++++.+++.|. +| |++|||++..+.++.+.++| +++.+|.. |+|.+.|
T Consensus 399 ~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~---~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~--V~p~eIE 472 (570)
T 3c5e_A 399 TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GD---FWLLGDRGIKDEDGYFQFMGRADDIINSSGYR--IGPSEVE 472 (570)
T ss_dssp CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TT---EEEEEEEEEECTTSCEEEEEEGGGCEEETTEE--ECHHHHH
T ss_pred CCCeeEEeccCCCCchhhccccCChhHhhhhhc-CC---ccccceeEEEcCCceEEEEecCCCEEEECCEE--ECHHHHH
Confidence 56888774 89999999999884 45 99999999999999988888 67789988 6777777
Q ss_pred HHHHHhhhhCCceEEEEcCh
Q psy2842 263 EACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.+..+..+.++.++..+++
T Consensus 473 ~~l~~~p~V~~a~Vv~~~~~ 492 (570)
T 3c5e_A 473 NALMEHPAVVETAVISSPDP 492 (570)
T ss_dssp HHHHTSTTEEEEEEEEEEET
T ss_pred HHHHhCCCcceEEEEeeeCC
Confidence 77777777777777776654
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-20 Score=194.37 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=121.8
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCC-----------CCcCccccccCCceEEEE
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKIV 192 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~-----------~~~~s~G~p~p~~~~~i~ 192 (486)
.++++||.+++||+++++++.++++.+|++++++||+||+++.++.+.... ...+++|+|+|+++++|+
T Consensus 290 ~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 369 (541)
T 1v25_A 290 HRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA 369 (541)
T ss_dssp CCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEE
T ss_pred CcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEE
Confidence 456899999999999999999999668999999999999988776654321 135789999999999999
Q ss_pred CCCCC-------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeee
Q psy2842 193 DPDEE-------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAG 255 (486)
Q Consensus 193 d~~~~-------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vp 255 (486)
|+++. +.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|..
T Consensus 370 d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g---~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~-- 444 (541)
T 1v25_A 370 DEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG---FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEW-- 444 (541)
T ss_dssp CTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTS---CEEEEEEEEECTTCCEEEEEESSCEEEETTEE--
T ss_pred CCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCC---CeEcCCEEEEcCCceEEEeecccceeeeCCEE--
Confidence 98764 35888875 89999999999986667 99999999999999998888 77789998
Q ss_pred cCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 256 MYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 256 i~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|+|.+.|+.+..+..+.++.++..+++
T Consensus 445 v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 471 (541)
T 1v25_A 445 ISSVDLENALMGHPKVKEAAVVAIPHP 471 (541)
T ss_dssp EEHHHHHCC----------CEEEEECS
T ss_pred ECHHHHHHHHHhCCCceEEEEEEecCC
Confidence 677777777777888888888877765
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-19 Score=192.14 Aligned_cols=157 Identities=14% Similarity=0.214 Sum_probs=131.5
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CC---CceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCC
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LD---IPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g---~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
.+++++||.+++||+++++++.+++.+ +| ++++++||+||+++.++...+. ..+.+++|+|+||++++|+|+++
T Consensus 374 ~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g 453 (652)
T 1pg4_A 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG 453 (652)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTC
T ss_pred cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCC
Confidence 456799999999999999999999987 77 8999999999999877665543 34679999999999999999877
Q ss_pred C-----Cccceehh--------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 197 E-----GNGEICLK--------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 197 ~-----~~gel~~~--------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
. +.|||.++ +|+++++++++.+... ...|++|||++..+.++++.++| .++.+|.. |++.
T Consensus 454 ~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~-~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~r--I~~~ 530 (652)
T 1pg4_A 454 HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFST-FKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHR--LGTA 530 (652)
T ss_dssp CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSS-STTSEEEEEEEEECTTSCEEEEEESSSEEEETTEE--EEHH
T ss_pred CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhc-CCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEE--ECHH
Confidence 5 45888765 6999999998877431 12399999999999999999998 78889988 6888
Q ss_pred CCHHHHHHhhhhCCceEEEEcCh
Q psy2842 260 NSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+.|+.+..+..+.++.++..+++
T Consensus 531 eIE~~l~~~p~V~ea~Vvg~~~~ 553 (652)
T 1pg4_A 531 EIESALVAHPKIAEAAVVGIPHA 553 (652)
T ss_dssp HHHHHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHHHhCCCcceEEEEEEEcC
Confidence 88888888888888888877654
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-20 Score=192.70 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=99.0
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCcccccc-CCceEEEECCCCC-----C
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTI-PGTQTKIVDPDEE-----G 198 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~-p~~~~~i~d~~~~-----~ 198 (486)
++||.+++||+++++++.+++++ +|++++++||+||++..++..... ....+++|+|+ ++++++|+|+++. +
T Consensus 307 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~ 386 (544)
T 3o83_A 307 QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGE 386 (544)
T ss_dssp TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTC
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCC
Confidence 78999999999999999999998 799999999999987554433222 12457899996 8999999998765 5
Q ss_pred ccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.||++++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|.. |+|.+.|+.+..+
T Consensus 387 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~~ 461 (544)
T 3o83_A 387 IGMLATRGPYTFCGYYQSPEHNSQVFDEDN---YYYSGDLVQRTPDGNLRVVGRIKDQINRGGEK--IASEEIEKLILLH 461 (544)
T ss_dssp CEEEEEECTTSCSCCTTCHHHHHHHBCTTC---CEEEEEEEEECTTSCEEEEEEEC------------------------
T ss_pred eeEEEEecCCcchhhcCChhhhhhhCCCCC---CeEcCCEEEEcCCCCEEEEeecCCEEEeCCEE--ECHHHHHHHHHhC
Confidence 6888764 89999999999997777 99999999999999998888 88899998 7999999999999
Q ss_pred hhhCCceEEEEcChhHHHH
Q psy2842 269 LVTSDANICVVEDDKQLEK 287 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~ 287 (486)
..+.++.++.++++..++.
T Consensus 462 p~V~~a~vv~~~~~~~g~~ 480 (544)
T 3o83_A 462 PEVMHAALVAIVDEQFGEK 480 (544)
T ss_dssp -------------------
T ss_pred CCccEEEEEeccCCCCCce
Confidence 9999999998887654443
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-19 Score=182.50 Aligned_cols=154 Identities=17% Similarity=0.124 Sum_probs=122.1
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC-----CCCcCccccccCCceEEEECCCCC
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPDEE 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~-----~~~~~s~G~p~p~~~~~i~d~~~~ 197 (486)
.++++|.+++||+++++++.+++.+ + +++++++||+||+++.++..... .....++|+|+|+++++|+|+++.
T Consensus 258 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~ 337 (511)
T 3e7w_A 258 LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQ 337 (511)
T ss_dssp TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSC
T ss_pred cCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCC
Confidence 4589999999999999999999988 7 89999999999998776643321 235678999999999999998865
Q ss_pred -----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 -----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 -----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
+.|||.++ ||+++++.+++.|...+-..|++|||++.. .++.+.++| +++.+|.. |+|.+.|
T Consensus 338 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~--v~p~eIE 414 (511)
T 3e7w_A 338 PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYR--MELEEIE 414 (511)
T ss_dssp BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEE--EEHHHHH
T ss_pred CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEE--eCHHHHH
Confidence 56898875 899999999999854332446999999998 588888888 77788888 5666666
Q ss_pred HHHHHhhhhCCceEEEEcC
Q psy2842 263 EACLHCLVTSDANICVVED 281 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~ 281 (486)
+.+..+..+.++.++..++
T Consensus 415 ~~l~~~p~V~~a~vv~~~~ 433 (511)
T 3e7w_A 415 FHVRQSQYVRSAVVIPYQP 433 (511)
T ss_dssp HHHHHSTTEEEEEEEEECS
T ss_pred HHHHhCCCcceEEEEEEcC
Confidence 6666666666666655543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-19 Score=198.07 Aligned_cols=163 Identities=24% Similarity=0.323 Sum_probs=103.7
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCC-----CCCCCcCccccccCCceEEEECC
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSA-----PDDFKLDGVGRTIPGTQTKIVDP 194 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~-----~~~~~~~s~G~p~p~~~~~i~d~ 194 (486)
...++++||.+++||+++++++.+++++ + +++++++||+||+++.++... +...+.+++|+|+|+++++|+|+
T Consensus 339 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 418 (979)
T 3tsy_A 339 EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDP 418 (979)
T ss_dssp GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECT
T ss_pred cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeC
Confidence 3456799999999999999999999988 7 899999999999987665431 22346789999999999999995
Q ss_pred C-CC-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCC
Q psy2842 195 D-EE-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYT 258 (486)
Q Consensus 195 ~-~~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~ 258 (486)
+ +. +.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|
T Consensus 419 ~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~~ 493 (979)
T 3tsy_A 419 DTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG---WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQ--VAP 493 (979)
T ss_dssp TSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEESCC-------------
T ss_pred CCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCC---cEEcCCEEEEcCCceEEEecCCCCEEEECCEE--ECH
Confidence 5 33 56888875 89999999999997777 99999999999999998888 88889998 799
Q ss_pred CCCHHHHHHhhhhCCceEEEEcChhHHHHHH
Q psy2842 259 TNSPEACLHCLVTSDANICVVEDDKQLEKIL 289 (486)
Q Consensus 259 ~~~~~~l~~~~~~~~~~vvi~~~~~~~~~~~ 289 (486)
.+.|..+..+..+.++.++..+++...+.+.
T Consensus 494 ~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~ 524 (979)
T 3tsy_A 494 AELEALLIGHPDITDVAVVAMKEEAAGEVPV 524 (979)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHhCCCcceEEEEEecccCCCcEEE
Confidence 9999999999999999888877664444433
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-19 Score=189.00 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=100.0
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC----CCCcCccccccCCceEEEECCCCC---
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~----~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
++||.+++||+++++++.+.+.+ + ++.++++||+||+++.++..... .....++|+|+|+++++|+|+++.
T Consensus 326 ~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~ 405 (570)
T 4gr5_A 326 EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAA 405 (570)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCC
T ss_pred CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCC
Confidence 78999999999999999888887 5 89999999999998776654321 234567999999999999998765
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCC-----cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGL-----ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~-----~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
+.|||+++ ||+++++.+++.|..+.+ ..|++|||++..+.++++.++| +++.+|.. |+|.+
T Consensus 406 ~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~--v~p~e 483 (570)
T 4gr5_A 406 NGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFR--VEPGE 483 (570)
T ss_dssp TTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------
T ss_pred CCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEE--eCHHH
Confidence 56888875 799999999999965532 2489999999999999998888 78889999 79999
Q ss_pred CHHHHHHhhhhCCceEEEEcChhHHH
Q psy2842 261 SPEACLHCLVTSDANICVVEDDKQLE 286 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vvi~~~~~~~~ 286 (486)
.|+.+..+..+.++.++..+++...+
T Consensus 484 IE~~l~~~p~V~~a~Vv~~~~~~~~~ 509 (570)
T 4gr5_A 484 VEARLVGHPAVRQAAVLAQDSRLGDK 509 (570)
T ss_dssp --------------------------
T ss_pred HHHHHhcCCCcceEEEEEeeCCCCCe
Confidence 99999999999999988887664433
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-19 Score=187.53 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=125.4
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC--------
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-------- 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-------- 197 (486)
+++|.+++||+++++++.+++.+ +|+++++.||+||++..++.........+++|+|+|+++++|+|+++.
T Consensus 272 ~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g 351 (505)
T 3nyq_A 272 AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGE 351 (505)
T ss_dssp HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSC
T ss_pred ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCC
Confidence 67899999999999999999988 799999999999998877766666667899999999999999998653
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH-----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG-----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g-----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.|||+++ ||+++++.+++.|..+| |++|||++..+.++.+.++| +++.+|.. |+|.+.|+.+.
T Consensus 352 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g---~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~--v~~~eIE~~l~ 426 (505)
T 3nyq_A 352 SVGEIQVRGPNLFTEYLNRPDATAAAFTEDG---FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYK--IGAGEIENALL 426 (505)
T ss_dssp CCEEEEEESTTSCCEETTCHHHHHHTBCTTS---CEEEEEEEEECTTSCEEEEEESSCCCEEETTEE--ECHHHHHHHHT
T ss_pred ceEEEEEecCchhhhhCCChhHhhhhhcCCC---CCccCCeEEECCCccEEEeCCccCceEEeCCEE--ECHHHHHHHHH
Confidence 45888874 89999999999997777 99999999999999888877 56788888 57777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 427 ~~p~V~~a~Vv~~~~~ 442 (505)
T 3nyq_A 427 EHPEVREAAVTGEPDP 442 (505)
T ss_dssp TSTTEEEEEEEEEEET
T ss_pred HCcCccEEEEEeeECC
Confidence 7777777777776654
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-19 Score=186.61 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=130.0
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCC---
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
..+++++|.+++||+++++++.+++.+.|++++++||+||+++.++..... ..+.+++|+|+++++++|+|+++.
T Consensus 280 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 359 (517)
T 3r44_A 280 ELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRE 359 (517)
T ss_dssp HCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEES
T ss_pred cCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCC
Confidence 345689999999999999999999998899999999999998876655433 346799999999999999998765
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||++++ ||+++++.+++.| .+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+.+.
T Consensus 360 ~g~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g---~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~ 433 (517)
T 3r44_A 360 HGEGEVVIKSDILLKEYWNRPEATRDAF-DNG---WFRTGDIGEIDDEGYLYIKDRLKDMIISGGEN--VYPAEIESVII 433 (517)
T ss_dssp SEEEEEEEEETTSCSEETTCHHHHHHTE-ETT---EEEEEEEEEECTTSCEEEEECGGGCEEETTEE--ECHHHHHHHHT
T ss_pred CCCeEEEEeCcchhhhhCCChhhhHhhh-cCC---CEecceeEEEcCCeeEEEecCCcCEEEECCEE--ECHHHHHHHHH
Confidence 35888875 8999999999998 456 99999999999999998888 77789998 67777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 434 ~~p~V~~~~Vv~~~~~ 449 (517)
T 3r44_A 434 GVPGVSEVAVIGLPDE 449 (517)
T ss_dssp TSTTEEEEEEEEEEET
T ss_pred hCCCEeEEEEEecccc
Confidence 7777777777776654
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-19 Score=187.73 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=125.8
Q ss_pred cCCCCceeEEEeccCCCCHHHHHHHHh-CC---CceeccccccccccccccCCC---CCCCcCccccccCCceEEEECC-
Q psy2842 123 AMGLDRCRVSLSGAAPISTELKRYFLS-LD---IPICEVFGMSECAGAHTVSAP---DDFKLDGVGRTIPGTQTKIVDP- 194 (486)
Q Consensus 123 ~~~l~~lr~~~~gga~l~~~~~~~~~~-~g---~~i~~~yG~TE~~~~~~~~~~---~~~~~~s~G~p~p~~~~~i~d~- 194 (486)
.+++++||.+++||+|+++++.+++.+ +| ++++++||+||+++.++...+ ...+++++|+|+||++++|+|+
T Consensus 380 ~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~ 459 (663)
T 1ry2_A 380 NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPN 459 (663)
T ss_dssp SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSS
T ss_pred cCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCC
Confidence 456799999999999999999999997 77 899999999999877666543 2347899999999999999998
Q ss_pred CCC------Cccceehh--------hhHhhHHHHHHHHHH--cCCcccceEEEEeecCCchhhhhHH----HhHcCCeee
Q psy2842 195 DEE------GNGEICLK--------EYEANVRTVAKAFLK--LGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAA 254 (486)
Q Consensus 195 ~~~------~~gel~~~--------~y~~~~~~~a~~l~~--~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~v 254 (486)
++. +.||+.++ +||++++++++.+.. .| |+++||++..+.++.+.++| +++.+|..
T Consensus 460 ~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g---~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~r- 535 (663)
T 1ry2_A 460 TGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG---YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHR- 535 (663)
T ss_dssp STTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT---SEEEEEEEEECTTCCEEECSCTTSCBCSSSCC-
T ss_pred CCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC---EEEcCCEEEEcCCCCEEEEeecCCEEEECCEE-
Confidence 543 35787654 799999999888743 35 99999999999999998888 77788888
Q ss_pred ecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 255 GMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 255 pi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|++.+.|+.+..+..+.++.++..+++
T Consensus 536 -I~~~eIE~~l~~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 536 -LSTAEIEAAIIEDPIVAECAVVGFNDD 562 (663)
T ss_dssp -BCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred -cCHHHHHHHHHhCCCcceEEEEEEecC
Confidence 577777777766666666666665543
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-19 Score=182.33 Aligned_cols=150 Identities=16% Similarity=0.138 Sum_probs=124.4
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCC---C--
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDE---E-- 197 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~---~-- 197 (486)
.++++||.+++||+++++++.+++++ ++..++++||+||++... ... ..+.+++|+|.++++++++|+++ .
T Consensus 269 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~-~~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~ 345 (504)
T 1t5h_X 269 LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSL-YMR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIV 345 (504)
T ss_dssp CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEE-EEE--SCSSSSEEBCCTTCCEEEECTTSCTTCBC
T ss_pred ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccccc-ccc--CCCCCccccCCCCCceeEEeccCCCCCcC
Confidence 45689999999999999999999998 799999999999994322 211 34678999999999999999876 2
Q ss_pred ---Cccceehh-------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHH
Q psy2842 198 ---GNGEICLK-------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPE 263 (486)
Q Consensus 198 ---~~gel~~~-------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~ 263 (486)
+.||+.++ ||+++++.+++.| .+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+
T Consensus 346 ~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g---~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~ 419 (504)
T 1t5h_X 346 ANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDG---WYRTSDVAVWTPEGTVRILGRVDDMIISGGEN--IHPSEIER 419 (504)
T ss_dssp CTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETT---EEEEEEEEEECTTSCEEEEEEGGGCEEETTEE--ECHHHHHH
T ss_pred CCCCcceEEEeCCceeeceecCCchhhhhhh-cCC---ccccCcEEEECCCceEEEeCcccCEEEECCEE--ECHHHHHH
Confidence 56888775 8999999999999 456 99999999999999988888 67789998 57777777
Q ss_pred HHHHhhhhCCceEEEEcCh
Q psy2842 264 ACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 264 ~l~~~~~~~~~~vvi~~~~ 282 (486)
.+..+..+.++.++..+++
T Consensus 420 ~l~~~p~V~~a~Vv~~~~~ 438 (504)
T 1t5h_X 420 VLGTAPGVTEVVVIGLADQ 438 (504)
T ss_dssp HHTTSTTEEEEEEEEEECS
T ss_pred HHHhCCCcceEEEEEeecC
Confidence 7777777777777777654
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-19 Score=187.50 Aligned_cols=194 Identities=16% Similarity=0.210 Sum_probs=146.9
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
..++..+++.+.. ++|++.++|.+++.+.+..
T Consensus 254 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------------------------------- 286 (549)
T 3g7s_A 254 MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTL----------------------------------------------- 286 (549)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHH-----------------------------------------------
T ss_pred CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhh-----------------------------------------------
Confidence 3355666677777 9999999999998887653
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-----CC---CceeccccccccccccccCC
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-----LD---IPICEVFGMSECAGAHTVSA 171 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-----~g---~~i~~~yG~TE~~~~~~~~~ 171 (486)
.......+++++|.+++||+++++++.+++.+ +| +.++++||+||+++.++.+.
T Consensus 287 ------------------~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 348 (549)
T 3g7s_A 287 ------------------ESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNP 348 (549)
T ss_dssp ------------------HHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECC
T ss_pred ------------------hhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCC
Confidence 00012245689999999999999999998876 46 88999999999998877665
Q ss_pred CCC-CCcCccccccCCceEEEEC-CCCC-----Cccceehh------hhHhhHHHHHHHHH--HcCCcccceEEEEeecC
Q psy2842 172 PDD-FKLDGVGRTIPGTQTKIVD-PDEE-----GNGEICLK------EYEANVRTVAKAFL--KLGLERYHSVCIIGFNA 236 (486)
Q Consensus 172 ~~~-~~~~s~G~p~p~~~~~i~d-~~~~-----~~gel~~~------~y~~~~~~~a~~l~--~~g~~~~~~vg~~~~~~ 236 (486)
... .+.+++|+|+|+++++|+| +++. +.|||+++ ||+++++.+++.|. .+| .+|++|||++..+
T Consensus 349 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g-~~~~~TGDl~~~~ 427 (549)
T 3g7s_A 349 PLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG-RKFFRTGDVGFID 427 (549)
T ss_dssp GGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTC-CEEEEEEEEEEEC
T ss_pred ccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCC-CceEccCcEEEEc
Confidence 443 4678999999999999999 5544 57888875 89999999988873 223 4589999999999
Q ss_pred CchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 237 PEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 237 ~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.++.+.++| .++.+|.. |+|.+.|+.+..+..+.++.++..+++
T Consensus 428 ~dG~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 475 (549)
T 3g7s_A 428 EEGFLHFQDRVKEVIKYKGYT--IAPFELEALLMKHEAVMDVAVIGKPDE 475 (549)
T ss_dssp TTSCEEEEEEC--------------CHHHHHHHTTSTTEEEEEEECCCC-
T ss_pred CCceEEEeccccceEEECCEE--ECHHHHHHHHHhCCCeeeEEEEeeEcc
Confidence 999998888 78889988 788888888888888888888877765
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-18 Score=181.20 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=120.0
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----Ccc
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-----GNG 200 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-----~~g 200 (486)
.++|.+++||+++++++.+++++ +|++++++||+||+++.++.+.......+++|+|+|+++++|+|+++. +.|
T Consensus 300 ~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~G 379 (529)
T 2v7b_A 300 VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVG 379 (529)
T ss_dssp CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCcc
Confidence 47999999999999999999998 799999999999997766665555567899999999999999998765 568
Q ss_pred ceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhh
Q psy2842 201 EICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLV 270 (486)
Q Consensus 201 el~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~ 270 (486)
||+++ +|+++++.+++.|. +| |.++||++..+.++.+.++| .++.+|.. |+|.+.|+.+..+..
T Consensus 380 El~v~g~~~~~gY~~~~~~t~~~f~-~~---~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~--v~p~eIE~~l~~~p~ 453 (529)
T 2v7b_A 380 DLYIKGPSAAVMYWNNREKSRATFL-GE---WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQY--VSPVEVEMVLVQHDA 453 (529)
T ss_dssp EEEEECTTCCCCBTTCHHHHHHHEE-TT---EEEEEEEEEECTTSCEEEEEEGGGCBC----C--BCHHHHHHHHTTSTT
T ss_pred EEEEecCCcccccCCChHHHHHhhh-cC---CcccCceEEECCCccEEEeCccCCeEEECCEE--ECHHHHHHHHHhCCC
Confidence 88875 79999999999884 45 99999999999999888888 67778887 577767777666666
Q ss_pred hCCceEEEE
Q psy2842 271 TSDANICVV 279 (486)
Q Consensus 271 ~~~~~vvi~ 279 (486)
+.++.++..
T Consensus 454 V~~~~vv~~ 462 (529)
T 2v7b_A 454 VLEAAVVGV 462 (529)
T ss_dssp EEEEEEEEE
T ss_pred cceEEEEEe
Confidence 666666666
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=160.93 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=106.5
Q ss_pred CCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCCccceehh
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 205 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~~gel~~~ 205 (486)
+++||.+++||+++++++.++++++|++++++||+||+++.++.+..+....+++|.|.||+++.+.+ .||++.+
T Consensus 147 l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~-----~Gel~~~ 221 (358)
T 4gs5_A 147 VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE-----RGCLHIS 221 (358)
T ss_dssp GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT-----TSEEEEE
T ss_pred CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccceeeccCCCeEEEecC-----cCceEEe
Confidence 37899999999999999999999999999999999999998888877777889999999999999866 6999998
Q ss_pred hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHH---hhhhCCceEE
Q psy2842 206 EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLH---CLVTSDANIC 277 (486)
Q Consensus 206 ~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~---~~~~~~~~vv 277 (486)
++.. .+| |++|||++..+.+++. ++| +++.+|.. |+|.+.|+.+.. +..+.++.++
T Consensus 222 g~~~----------~~g---~~~TGDlg~~d~~g~~-~~GR~dd~Ik~~G~~--v~p~eIE~~l~~~~~~p~V~~a~vv 284 (358)
T 4gs5_A 222 GAVT----------NGQ---TVQTNDLVEIHGNAFQ-WIGRADNVINSGGVK--IVLDQIDQRIAAVFHHLNIGNAFFC 284 (358)
T ss_dssp SGGG----------TTC---CEEEEEEEEECSSEEE-EEEEGGGEEEETTEE--EEHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred cccc----------cCc---ceecCCccccccCceE-EcccccCeEEECCEE--ECHHHHHHHHHHhccCCCccEEEEE
Confidence 8643 345 8999999999999854 457 77788888 566666655433 3344555444
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-18 Score=178.32 Aligned_cols=156 Identities=20% Similarity=0.193 Sum_probs=127.2
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC-----CCCcCccccccCCceEEEECCCC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~-----~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
.+++++|.+++||+++++++.+++.+ + +++++++||+||+++.++..... ....+++|+|.++++++|+|+++
T Consensus 258 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g 337 (512)
T 3fce_A 258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG 337 (512)
T ss_dssp TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSS
T ss_pred hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCC
Confidence 34589999999999999999999988 7 89999999999998776654332 23567899999999999999876
Q ss_pred C-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCC
Q psy2842 197 E-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNS 261 (486)
Q Consensus 197 ~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~ 261 (486)
. +.||+.++ ||+++++.+++.|....-..|++|||++.. .++.+.+.| +++.+|.. |+|.+.
T Consensus 338 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~--v~p~eI 414 (512)
T 3fce_A 338 TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYR--MELEEI 414 (512)
T ss_dssp CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEE--ECHHHH
T ss_pred CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEE--ECHHHH
Confidence 5 57888875 899999999999842211348999999998 788888887 77789988 688888
Q ss_pred HHHHHHhhhhCCceEEEEcCh
Q psy2842 262 PEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 262 ~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|+.+..+..+.++.++.++++
T Consensus 415 E~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 415 EHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp HHHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHhCCCcceEEEEEEecC
Confidence 888888887878777766544
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-18 Score=180.22 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=116.5
Q ss_pred CCCCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC-----CCCcCccccccCCceEEEECCCC
Q psy2842 124 MGLDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPDE 196 (486)
Q Consensus 124 ~~l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~-----~~~~~s~G~p~p~~~~~i~d~~~ 196 (486)
.+++++|.+++||+++++++.+.+.+ + +++++++||+||+++.++..... ....+++|+|+|+++++|+|+++
T Consensus 261 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g 340 (521)
T 3l8c_A 261 AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDG 340 (521)
T ss_dssp TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTS
T ss_pred ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCc
Confidence 34589999999999999999999887 6 89999999999998776653322 23567899999999999999887
Q ss_pred C-----Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCC
Q psy2842 197 E-----GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNS 261 (486)
Q Consensus 197 ~-----~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~ 261 (486)
. +.|||+++ ||+++++.+++.|....-..|++|||++..+.++++.+.| +++.+|.. |+|.+.
T Consensus 341 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~--v~p~eI 418 (521)
T 3l8c_A 341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYR--IELEDV 418 (521)
T ss_dssp CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-------CBHHHH
T ss_pred CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEE--eCHHHH
Confidence 5 56888875 7999999999998432223489999999999999988888 67778877 566666
Q ss_pred HHHHHHhhhhCCceEEEE
Q psy2842 262 PEACLHCLVTSDANICVV 279 (486)
Q Consensus 262 ~~~l~~~~~~~~~~vvi~ 279 (486)
|+.+..+..+.++.++..
T Consensus 419 E~~l~~~p~V~~a~vv~~ 436 (521)
T 3l8c_A 419 SQQLNQSPMVASAVAVPR 436 (521)
T ss_dssp HHHHHTSTTEEEEEEECC
T ss_pred HHHHHcCCCcceEEEEEe
Confidence 665555555555544443
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-18 Score=180.34 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=126.8
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC----CCCcCccccccCCceEEEECCCCC--
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~----~~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
+++||.+++||+++++++.+.+.+ + ++.++++||+||++..++..... ....+++|+|+++++++|+|+++.
T Consensus 275 l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~ 354 (620)
T 4dg8_A 275 LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEI 354 (620)
T ss_dssp GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBC
T ss_pred CCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCC
Confidence 378999999999999988887765 4 89999999999998776543222 235678999999999999998765
Q ss_pred ----Cccceehh------hhHhhHHHHHHHHHHcCC----cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCC
Q psy2842 198 ----GNGEICLK------EYEANVRTVAKAFLKLGL----ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTT 259 (486)
Q Consensus 198 ----~~gel~~~------~y~~~~~~~a~~l~~~g~----~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~ 259 (486)
+.||++++ ||+++++.+++.|..++. ..|++|||++..+.++.+.++| .++.+|.. |+|.
T Consensus 355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~r--i~~~ 432 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYR--LDLP 432 (620)
T ss_dssp CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEE--EEHH
T ss_pred CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEE--cCHH
Confidence 45899874 899999999999976432 1579999999999999999998 78889998 6888
Q ss_pred CCHHHHHHhhhhCCceEEEEcC
Q psy2842 260 NSPEACLHCLVTSDANICVVED 281 (486)
Q Consensus 260 ~~~~~l~~~~~~~~~~vvi~~~ 281 (486)
+.|..+..+..+.++.+++.++
T Consensus 433 eIE~~l~~~p~V~~a~Vv~~~~ 454 (620)
T 4dg8_A 433 ALEQRFRRQPGILDCALLVRER 454 (620)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEE
T ss_pred HHHHHHHhCCCccEEEEEEEeC
Confidence 8888888888888887776654
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-18 Score=180.05 Aligned_cols=148 Identities=26% Similarity=0.347 Sum_probs=122.7
Q ss_pred ceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCCCCCccceehh
Q psy2842 128 RCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 205 (486)
Q Consensus 128 ~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~~~~~gel~~~ 205 (486)
++|.+++||+++++++.+++.++|++++++||+||+++.++...+. ..+.+++|+|+++++++|+|++.++.||++++
T Consensus 275 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~ 354 (501)
T 3ipl_A 275 NLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIK 354 (501)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEE
T ss_pred cccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEe
Confidence 7999999999999999999999999999999999998765544332 23678999999999999999876677998864
Q ss_pred ------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCce
Q psy2842 206 ------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDAN 275 (486)
Q Consensus 206 ------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~ 275 (486)
||+++++.++. + .+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|+.+..+..+.++.
T Consensus 355 g~~~~~gY~~~~~~t~~-~-~~g---~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~--v~p~eiE~~l~~~p~V~~~~ 427 (501)
T 3ipl_A 355 GANVMNGYLYPTDLTGT-F-ENG---YFNTGDIAEIDHEGYVMIYDRRKDLIISGGEN--IYPYQIETVAKQFPGISDAV 427 (501)
T ss_dssp STTSCSCCSBSTTCCCS-E-ETT---EEEEEEEEEECTTSCEEEEEECCCCEECSSCE--ECHHHHHHHHTTSTTEEEEE
T ss_pred ccchhhhhCcChhhcch-h-cCC---ceecCCEEEEcCCCeEEEEccccceEEECCEE--ECHHHHHHHHHhCCCccEEE
Confidence 89999887766 4 445 99999999999999998888 77788888 57777777777777777777
Q ss_pred EEEEcCh
Q psy2842 276 ICVVEDD 282 (486)
Q Consensus 276 vvi~~~~ 282 (486)
++..+++
T Consensus 428 vv~~~~~ 434 (501)
T 3ipl_A 428 CVGHPDD 434 (501)
T ss_dssp EEEEEET
T ss_pred EEEEecc
Confidence 7766654
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-18 Score=179.45 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=126.7
Q ss_pred CCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCC---CCcCccccccCCceEEEECCCCC-----
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~---~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
++++|.+++||+++++++.++|.+. ++++++||+||++..++...... ...+++|+|+|+++++|+|+++.
T Consensus 292 ~~~lr~~~~gG~~l~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g 370 (563)
T 1amu_A 292 ILSIQTLITAGSATSPSLVNKWKEK-VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVG 370 (563)
T ss_dssp CCSCSEEEEESSCCCHHHHHHHTTT-SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTT
T ss_pred cccccEEEEEEecCCHHHHHHHHhC-CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCC
Confidence 4789999999999999999999874 78999999999987665543222 25678999999999999998765
Q ss_pred Cccceehh------hhHhhHHHHHHHHHHcCC---cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHH
Q psy2842 198 GNGEICLK------EYEANVRTVAKAFLKLGL---ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEA 264 (486)
Q Consensus 198 ~~gel~~~------~y~~~~~~~a~~l~~~g~---~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~ 264 (486)
+.|||+++ ||+++++.+++.|....+ ..|++|||++..+.++.+.++| +++.+|.. |+|.+.|+.
T Consensus 371 ~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~--V~p~eIE~~ 448 (563)
T 1amu_A 371 EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHR--VELEEVESI 448 (563)
T ss_dssp CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEE--EEHHHHHHH
T ss_pred CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEE--eCHHHHHHH
Confidence 56888875 899999999999964322 3489999999999999998888 67789998 677888888
Q ss_pred HHHhhhhCCceEEEEcCh
Q psy2842 265 CLHCLVTSDANICVVEDD 282 (486)
Q Consensus 265 l~~~~~~~~~~vvi~~~~ 282 (486)
+..+..+.++.++..+++
T Consensus 449 l~~~p~V~~a~Vv~~~~~ 466 (563)
T 1amu_A 449 LLKHMYISETAVSVHKDH 466 (563)
T ss_dssp HTTSTTEEEEEEEEEECT
T ss_pred HHhCCCcceEEEEEeecC
Confidence 888877888888777664
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-17 Score=172.29 Aligned_cols=152 Identities=25% Similarity=0.306 Sum_probs=94.2
Q ss_pred CCceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC-----C
Q psy2842 126 LDRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-----G 198 (486)
Q Consensus 126 l~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-----~ 198 (486)
++++|.+++||++ ++.+.+.+ + ++.++++||+||+++.++.....+ ...++|+|+++++++|+|+++. +
T Consensus 271 l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d~~~~~~~~g~ 346 (509)
T 3ivr_A 271 LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVDAEDRPLPPGE 346 (509)
T ss_dssp GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEECTTSCBCCTTC
T ss_pred hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc-CCCcccccCCCcEEEEECCCCCCCCCCC
Confidence 3789999999998 77777777 6 999999999999998766554322 3456999999999999998875 5
Q ss_pred ccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH------HhHcCCeeeecCCCCCHHHHH
Q psy2842 199 NGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG------AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 199 ~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g------~~~~gg~~vpi~~~~~~~~l~ 266 (486)
.||++++ ||+++++.+++.|. +| |++|||++..+.++.+.++| +++.+|.. |+|.+.|+.+.
T Consensus 347 ~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g---~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~--v~p~eiE~~l~ 420 (509)
T 3ivr_A 347 VGEIVLRGPTVFKGYWNNAAATQHAFR-NG---WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGEN--VYPAEVEGALK 420 (509)
T ss_dssp CEEEEEESTTSCCEETTCHHHHHHHTG-GG---SEEEEEEEEECTTSCEEEEEEC-------------------------
T ss_pred ceEEEEecCCccccccCCHHHhHHHhh-cC---CcccccEEEECCCceEEEeCCCCcceeEEECCEE--ECHHHHHHHHH
Confidence 6888875 89999999999995 55 99999999999999887777 37788988 79999999999
Q ss_pred HhhhhCCceEEEEcChhHHHH
Q psy2842 267 HCLVTSDANICVVEDDKQLEK 287 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~~~~~~ 287 (486)
.+..+.++.++..+++...+.
T Consensus 421 ~~p~V~~a~vv~~~~~~~~~~ 441 (509)
T 3ivr_A 421 QHPAIADAVVIGVPDPQWSEA 441 (509)
T ss_dssp ---------------------
T ss_pred hCCCceeEEEEeccccccCcE
Confidence 999999999998887654443
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-17 Score=175.83 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=125.9
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCcccccc-CCceEEEECCCCC----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTI-PGTQTKIVDPDEE---- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~-p~~~~~i~d~~~~---- 197 (486)
++++||.+++||+++++++.+++.+ +|+.+++.||+||++..++..... .....++|+|+ ++.+++|+|+++.
T Consensus 300 ~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~ 379 (617)
T 3rg2_A 300 QLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQ 379 (617)
T ss_dssp TTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCT
T ss_pred cCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCC
Confidence 4589999999999999999999988 799999999999987654432221 12346899997 7889999998776
Q ss_pred -Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.||+++ +||+++++.+++.|..+| |++|||++..+.++.+.++| .++.+|.. |+|.+.|..+.
T Consensus 380 G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~---~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~r--i~~~eIE~~l~ 454 (617)
T 3rg2_A 380 GEVGRLMTRGPYTFRGYYKSPQHNASAFDANG---FYCSGDLISIDPEGYITVQGREKDQINRGGEK--IAAEEIENLLL 454 (617)
T ss_dssp TCCEEEEEECSSSCSCCTTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEECSSEEEETTEE--EEHHHHHHHHT
T ss_pred CCceEEEecCccccchhcCChhhhhhccCCCC---ceecCceEEEcCCceEEEEeecCCEEEECCEE--eCHHHHHHHHH
Confidence 5688876 499999999999997777 89999999999999999988 77789988 67777777777
Q ss_pred HhhhhCCceEEEEcCh
Q psy2842 267 HCLVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~~~~~~~~vvi~~~~ 282 (486)
.+..+.++.++..+++
T Consensus 455 ~~p~V~~a~vv~~~~~ 470 (617)
T 3rg2_A 455 RHPAVIYAALVSMEDE 470 (617)
T ss_dssp TSTTEEEEEEEEEEET
T ss_pred hCCCeeEEEEEeccCc
Confidence 7777777777766543
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-17 Score=168.86 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=97.8
Q ss_pred CCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCC-CCCCcCccccccCCceEEEECCCCC-----
Q psy2842 125 GLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPDEE----- 197 (486)
Q Consensus 125 ~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~-~~~~~~s~G~p~p~~~~~i~d~~~~----- 197 (486)
++++||.+++||+++++++.++|++ +++.++++||+||++..++.... .....+++|+|+++++++|+|+++.
T Consensus 292 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 292 DAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371 (562)
T ss_dssp GSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCT
T ss_pred ccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCC
Confidence 4589999999999999999999998 69999999999999876665443 3346789999999999999997543
Q ss_pred -Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHHH
Q psy2842 198 -GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEACL 266 (486)
Q Consensus 198 -~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l~ 266 (486)
+.|||+++ ||+++++.++..+. +| ..|++|||++..+.++++.++| +++.+|.. |+|.+.|+.+.
T Consensus 372 g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g-~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~--v~p~eIE~~l~ 447 (562)
T 3ite_A 372 GMAGELVIEGSLVANGYLNRPDAKGFCDI-NG-RKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQR--LELGEVSEVIR 447 (562)
T ss_dssp TSCEEEEEESTTSCCEESSCTTCCSEEEE-TT-EEEEEEEEEEEECTTSCEEEEEEC-----------------------
T ss_pred CCceEEEEeccccchhhCCCccccccccC-CC-CEEEecCCEEEEcCCCeEEEEccccCEEeECcEE--ECHHHHHHHHH
Confidence 46888875 89999886653321 22 3489999999999999998888 88889999 79999988887
Q ss_pred Hh-hhhCCceEEEEcCh
Q psy2842 267 HC-LVTSDANICVVEDD 282 (486)
Q Consensus 267 ~~-~~~~~~~vvi~~~~ 282 (486)
.+ ....++.+++.+++
T Consensus 448 ~~~~~~~~~~v~~~~~~ 464 (562)
T 3ite_A 448 SLSPTDIDVVTLLLNHP 464 (562)
T ss_dssp -----------------
T ss_pred hcCCCceeEEEEEecCC
Confidence 77 44445555555554
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-17 Score=171.52 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=119.8
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-C------CCceeccccccccccccccCCCC---------------------
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-L------DIPICEVFGMSECAGAHTVSAPD--------------------- 173 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~------g~~i~~~yG~TE~~~~~~~~~~~--------------------- 173 (486)
...++++||.+++||+++++++.++|.+ + +..++++||+||+++.++...+.
T Consensus 284 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (590)
T 3kxw_A 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFA 363 (590)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBC
T ss_pred cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeec
Confidence 4567799999999999999999999887 5 24699999999999877654321
Q ss_pred ------CCCcCccccccCCceEEEECCCCC------Cccceehh------hhHhhHHHHHHHHHHcC-----CcccceEE
Q psy2842 174 ------DFKLDGVGRTIPGTQTKIVDPDEE------GNGEICLK------EYEANVRTVAKAFLKLG-----LERYHSVC 230 (486)
Q Consensus 174 ------~~~~~s~G~p~p~~~~~i~d~~~~------~~gel~~~------~y~~~~~~~a~~l~~~g-----~~~~~~vg 230 (486)
....+++|+|+++ ++|+|+++. +.|||+++ ||+++++.+++.|...- -..|++||
T Consensus 364 ~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TG 441 (590)
T 3kxw_A 364 DDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441 (590)
T ss_dssp CTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEE
T ss_pred cCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecC
Confidence 1245789999998 888997732 56888875 89999999999995421 12389999
Q ss_pred EEeecCCchhhhhHH----HhHcCCeeeecCCCCCHHHH-HHhhhhC--CceEEEEcCh
Q psy2842 231 IIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPEAC-LHCLVTS--DANICVVEDD 282 (486)
Q Consensus 231 ~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~~l-~~~~~~~--~~~vvi~~~~ 282 (486)
|++..+ ++.+.++| +++.+|.. |+|.+.|..+ ..+..+. ++.++.++++
T Consensus 442 Dlg~~d-dG~l~~~GR~dd~Ik~~G~~--v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~ 497 (590)
T 3kxw_A 442 DLGFLH-ENELYVTGRIKDLIIIYGKN--HYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497 (590)
T ss_dssp EEEEEE-TTEEEEEEESSCHHHHHHHT--THHHHHHHHHHHSGGGGGEEEEEEEEEEET
T ss_pred cEEEEE-CCEEEEEcCccceEEECCEe--cCHHHHHHHHHhcCccccCccEEEEEecCC
Confidence 999998 88888888 88889988 6777777777 5555555 5666666543
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-16 Score=158.54 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=97.8
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CC------CceeccccccccccccccCCCCC--------------------
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LD------IPICEVFGMSECAGAHTVSAPDD-------------------- 174 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g------~~i~~~yG~TE~~~~~~~~~~~~-------------------- 174 (486)
...++++||.+++||+++++++.++|.+ ++ +.++++||+||++..++......
T Consensus 306 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 385 (480)
T 3t5a_A 306 AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPC 385 (480)
T ss_dssp TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCC
T ss_pred cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeec
Confidence 4456799999999999999999999987 63 36999999999998877655431
Q ss_pred -----CCcCccccccCCceEEEECCCCC------Cccceehh------hhHhhHHHHHHHHHH------cC--CcccceE
Q psy2842 175 -----FKLDGVGRTIPGTQTKIVDPDEE------GNGEICLK------EYEANVRTVAKAFLK------LG--LERYHSV 229 (486)
Q Consensus 175 -----~~~~s~G~p~p~~~~~i~d~~~~------~~gel~~~------~y~~~~~~~a~~l~~------~g--~~~~~~v 229 (486)
.+.+++|+|+| ++++|+|+++. +.|||+++ ||+++++.+++.|.. .| -..|++|
T Consensus 386 ~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~T 464 (480)
T 3t5a_A 386 AGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRT 464 (480)
T ss_dssp CSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEE
T ss_pred CCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeec
Confidence 23468999999 99999997742 57898875 899999999999951 11 2349999
Q ss_pred EEEeecCCchhhhhHH
Q psy2842 230 CIIGFNAPEWFYSDLG 245 (486)
Q Consensus 230 g~~~~~~~~~~~~~~g 245 (486)
||++..+ ++++.++|
T Consensus 465 GDlg~~d-dG~l~~~G 479 (480)
T 3t5a_A 465 GDSGFVT-DGKMFIIG 479 (480)
T ss_dssp EEEEEEE-TTEEEECC
T ss_pred cceeeEE-CCEEEEeC
Confidence 9999986 88776654
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-16 Score=176.55 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=126.3
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-C-CCceeccccccccccccccCCCC----CCCcCccccccCCceEEEECCCCC---
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-L-DIPICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPDEE--- 197 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~-g~~i~~~yG~TE~~~~~~~~~~~----~~~~~s~G~p~p~~~~~i~d~~~~--- 197 (486)
++||.+++||+++++++.+.|.+ + +..++++||+||++..++..... .....++|+|+++++++|+|+++.
T Consensus 720 ~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p 799 (1304)
T 2vsq_A 720 KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP 799 (1304)
T ss_dssp HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCC
T ss_pred CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCC
Confidence 67999999999999999998887 5 57899999999998776654322 234578999999999999998765
Q ss_pred --Cccceehh------hhHhhHHHHHHHHHHcCC---cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCH
Q psy2842 198 --GNGEICLK------EYEANVRTVAKAFLKLGL---ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSP 262 (486)
Q Consensus 198 --~~gel~~~------~y~~~~~~~a~~l~~~g~---~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~ 262 (486)
..|||+++ ||+++++.+++.|..+.+ .+|++|||++..+.++.+.++| .++.+|.. |++.+.|
T Consensus 800 ~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~r--ie~~eIE 877 (1304)
T 2vsq_A 800 FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHR--IELEEIE 877 (1304)
T ss_dssp TTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEE--EEHHHHH
T ss_pred CCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEe--eCHHHHH
Confidence 57888874 899999999999965533 3589999999999999999988 67789998 6888888
Q ss_pred HHHHHhhhhCCceEEEEcC
Q psy2842 263 EACLHCLVTSDANICVVED 281 (486)
Q Consensus 263 ~~l~~~~~~~~~~vvi~~~ 281 (486)
..+..+..+.++.++..++
T Consensus 878 ~~l~~~p~V~~a~V~~~~~ 896 (1304)
T 2vsq_A 878 KQLQEYPGVKDAVVVADRH 896 (1304)
T ss_dssp HHHHHSSSCCEEEEEEECC
T ss_pred HHHHhCCCCceEEEEEEec
Confidence 8888888877777766543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-15 Score=154.56 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=131.5
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
.+++..+++.+.. +||++.++|.++..+.+...
T Consensus 164 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------------------------- 197 (436)
T 3qov_A 164 AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQ---------------------------------------------- 197 (436)
T ss_dssp SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHH----------------------------------------------
T ss_pred CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH----------------------------------------------
Confidence 4466677777888 99999999999998876530
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccc-cccCCCCCCCc
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGA-HTVSAPDDFKL 177 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~-~~~~~~~~~~~ 177 (486)
.......++++|.+++||+++++++.+++++ +|++++++||+||+++. ++...+ ..
T Consensus 198 -------------------~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~ 255 (436)
T 3qov_A 198 -------------------EEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQ 255 (436)
T ss_dssp -------------------HTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TC
T ss_pred -------------------HcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CC
Confidence 0001112589999999999999999999998 69999999999999655 333221 11
Q ss_pred CccccccCCceEEEEC-CCCC-----CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCch------h---hh
Q psy2842 178 DGVGRTIPGTQTKIVD-PDEE-----GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEW------F---YS 242 (486)
Q Consensus 178 ~s~G~p~p~~~~~i~d-~~~~-----~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~------~---~~ 242 (486)
...|.|.++++++|+| +++. +.||+.++++.+. .+ ..+ |++|||++..+.++ + +.
T Consensus 256 ~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~------~~-~~~---~y~TGDl~~~~~~gc~cG~~~~~il~ 325 (436)
T 3qov_A 256 NGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDRE------MM-PLI---RYRTRDLTRILPGKCPCGRTHLRIDR 325 (436)
T ss_dssp SSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCC------SS-CCC---SEEEEEEECEECSCCTTCCCSCEECC
T ss_pred CeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcC------Cc-eEE---EEEcCCEEEEcCCCCCCCCCccccCc
Confidence 2367788899999999 4443 5799999874321 12 233 89999999988886 4 56
Q ss_pred hHH----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 243 DLG----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 243 ~~g----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
++| +++.+|.. |+|.+.++.+..+..+.++.+++.+++
T Consensus 326 i~GR~dd~ik~~G~~--v~p~eiE~~l~~~p~v~~~~vv~~~~~ 367 (436)
T 3qov_A 326 IKGRSDDMFIIKGVN--IFPMQVEKILVQFPELGSNYLITLETV 367 (436)
T ss_dssp CCCBSSSCEEETTEE--ECHHHHHHHHTTCTTEEEEEEEEEEEE
T ss_pred ccCccCCEEEECCEE--ECHHHHHHHHHhCcCcCCcEEEEEEcC
Confidence 777 67788888 566666666666666666666665543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-15 Score=151.71 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=131.9
Q ss_pred CceeEEEeCCCCC-CCCCCCcHhHHHHHHHhhCCCccccccccCCCchhhhhhhhccchhhHHHHHHHhhhhhHHHHHHh
Q psy2842 21 HGRTRIHLGEAGV-AAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYKLQTTGVKRWIANYAKSTSLQHYMAYL 99 (486)
Q Consensus 21 ~~~~~~~~~~~~~-~pt~~~~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (486)
.+++..+++.++. +||+++++|.++..+.+....
T Consensus 168 ~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------------------------------- 202 (437)
T 2y27_A 168 GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIER--------------------------------------------- 202 (437)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHH---------------------------------------------
Confidence 3466677778888 999999999999988765300
Q ss_pred hhcCCCCchHHHHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccc-cccCCCCCCCc
Q psy2842 100 EKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGA-HTVSAPDDFKL 177 (486)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~-~~~~~~~~~~~ 177 (486)
. ....+++++|.+++||+++++++.+++++ +|++++++||+||+++. ++...+.. .
T Consensus 203 ------------------~--~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~--~ 260 (437)
T 2y27_A 203 ------------------Q--GLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET--K 260 (437)
T ss_dssp ------------------T--TCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT--C
T ss_pred ------------------c--CCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC--C
Confidence 0 00011378999999999999999999987 79999999999998543 43332211 1
Q ss_pred CccccccCCceEEEECCC-CC-----CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCC-chhh-----hhHH
Q psy2842 178 DGVGRTIPGTQTKIVDPD-EE-----GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAP-EWFY-----SDLG 245 (486)
Q Consensus 178 ~s~G~p~p~~~~~i~d~~-~~-----~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~-~~~~-----~~~g 245 (486)
...+.|.++++++|+|++ +. +.||+.++++.+. .+ .++ |++|||++..+. ++.. .+.|
T Consensus 261 ~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~------~~-~~~---~y~TGDl~~~~~~~G~~~~~i~~i~G 330 (437)
T 2y27_A 261 DGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKE------AL-PII---RYRTRDLTRLLPGTARTMRRMEKITG 330 (437)
T ss_dssp SSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCS------SS-CCC---SEEEEEEECEECCSSSSSCEECCCCE
T ss_pred CceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCcC------Cc-hhh---eeecCCEEEEeCCCCCCccccCcccc
Confidence 125667789999999964 33 5799999874321 22 234 899999999887 5664 5666
Q ss_pred ----HhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 246 ----AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 246 ----~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
+++.+|.. |+|.+.++.+..+..+.++.+++++++
T Consensus 331 R~~d~i~~~G~~--v~p~eiE~~l~~~p~V~~~~vv~~~~~ 369 (437)
T 2y27_A 331 RSDDMMIVRGVN--VFPTQIEEQLLKQRALAPHYQIVLTKE 369 (437)
T ss_dssp EGGGCEEETTEE--ECHHHHHHHHTTCTTBCSCCEEEEEEE
T ss_pred ccCCeEEECCeE--ECHHHHHHHHHhCcCcCccEEEEEeec
Confidence 66778888 677777777777777777777766543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-15 Score=150.92 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=102.2
Q ss_pred CceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccc-cccCCCCCCCcCccccccCCceEEEECCC-CC-----C
Q psy2842 127 DRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGA-HTVSAPDDFKLDGVGRTIPGTQTKIVDPD-EE-----G 198 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~-~~~~~~~~~~~~s~G~p~p~~~~~i~d~~-~~-----~ 198 (486)
+++|.+++||+++++++.+++++ +|++++++||+||+++. ++...+.. ..| .+.|.++++++|+|++ +. +
T Consensus 212 ~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~~~~~~~~~~~i~d~~~g~~~~~G~ 289 (443)
T 2y4o_A 212 SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-KDG-PVIWEDHFYPEIIDPVTGEVLPDGS 289 (443)
T ss_dssp SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-CCS-EEECTTTEEEEEECTTTCCBCCTTC
T ss_pred CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-CCc-eEEccCCeEEEEEcCCCCCCCCCCC
Confidence 78999999999999999999987 79999999999998543 33332211 112 5567789999999954 43 5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCc-hhh-----hhHH----HhHcCCeeeecCCCCCHHHHHHh
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPE-WFY-----SDLG----AIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~-~~~-----~~~g----~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
.||+.++++.+. .+ ..+ |++|||++..+.+ +.+ .++| +++.+|.. |+|.+.++.+..+
T Consensus 290 ~Gel~v~~~t~~------~~-p~~---~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~--v~p~eiE~~l~~~ 357 (443)
T 2y4o_A 290 QGELVFTSLTKE------AM-PVI---RYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVN--VFPSQIEEIVVAL 357 (443)
T ss_dssp CEEEEEEESSCS------SS-CCS---SEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEE--ECHHHHHHHHHTS
T ss_pred ceEEEEeCCCcc------cC-hhh---eeecCCEEEEcCCCCCCccccCccccccCCeEEECCEE--ECHHHHHHHHHhC
Confidence 799999875322 22 233 8999999998877 764 5677 67788888 5666666666666
Q ss_pred hhhCCceEEEEcC
Q psy2842 269 LVTSDANICVVED 281 (486)
Q Consensus 269 ~~~~~~~vvi~~~ 281 (486)
..+.++.++++++
T Consensus 358 p~V~~~~vv~~~~ 370 (443)
T 2y4o_A 358 PLLSGQFQITLSR 370 (443)
T ss_dssp TTEEEEEEEEEEE
T ss_pred cCcCccEEEEEec
Confidence 6655665555544
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=136.30 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=68.9
Q ss_pred CCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 340 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 340 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
.+++++|+|||||||.||||+++|+++.+++......+++ .++|++++.+|++|.+|+. .++.++..|+++++.++
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSL-GPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEP 111 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCC-CCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCc
Confidence 5789999999999999999999999999999988888888 7889999999999999974 57788999999988765
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.5e-12 Score=126.55 Aligned_cols=142 Identities=8% Similarity=-0.016 Sum_probs=92.8
Q ss_pred CceEEEEcCCCCCCCCceeEechHHHHHHHHHHHH---HccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 341 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ---YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 341 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
+++++++|||||||.||||+++|+++......... .+++ .++|++++.+|+.|..+....++.++..|+++++.+.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGI-RKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTC-CTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCC-CCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 78999999999999999999999999876655533 3466 6789999999998888887888899999999998755
Q ss_pred -ChHHHHHHHHHH------HhhhhHHHHhhhccccccc--ccccceeecCCCCCCcccccchHHHHHHHHHHHhhhc
Q psy2842 418 -NALKVYKATQAA------IDRANLKSISNAQKIQKFE--FLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 485 (486)
Q Consensus 418 -~~~~~~~~i~~~------i~~~~~~~l~~~~~i~~~~--l~p~~~~~~~g~ltpt~klkR~~i~~~y~~~I~~lY~ 485 (486)
++....+.+.+. ..+..+..+.....-.... +.+....+.+|+..+. .++ +.+.+.|...|-+.|+
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~-~~~-~~~~~~~g~~v~~~YG 239 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTD-EQR-RKIERMLNVKAYNSFG 239 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCH-HHH-HHHHHHHTSEEEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCH-HHH-HHHHHHhCccEEecCc
Confidence 444444444431 1122234444332222222 3444555666765543 222 2345555433444443
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.5e-12 Score=123.68 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=59.5
Q ss_pred CCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHH---HHccCCCCCeEEEEeCch-hhHHHHHHHHHHHHHhCcEEE
Q psy2842 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 413 (486)
Q Consensus 338 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~h~~g~~~~~~~~l~~G~tv~ 413 (486)
...+++++|+|||||||.||||+++|+++........ ...++ ..+|++++.+|+ +|..|+... +.++..|++++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~g~~~~g~~~~-~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPG-RPSGNTLAAIPTGPHIVGAINK-ERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTT-CCCCEEEECSCCTTCHHHHHHH-HHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCC-CCcceEEEecCCCchhhhHHHH-HHHHHcCCEEE
Confidence 3578889999999999999999999999998777543 33344 678999999999 999887554 44588899555
Q ss_pred EcCCCh
Q psy2842 414 FADKNA 419 (486)
Q Consensus 414 ~~~~~~ 419 (486)
..+.++
T Consensus 166 ~~~~dp 171 (369)
T 3hgu_A 166 SIDIDP 171 (369)
T ss_dssp CCCCCH
T ss_pred CccCCh
Confidence 444443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.2e-11 Score=119.35 Aligned_cols=89 Identities=13% Similarity=0.017 Sum_probs=68.5
Q ss_pred CCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHH---HHccCCCCCeEEEEeCch-hhHHHHHHHHHHHHHhCcEEE
Q psy2842 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 413 (486)
Q Consensus 338 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~h~~g~~~~~~~~l~~G~tv~ 413 (486)
..++++++++|||||||.||||+++|+++........ ..+++ .++|++++.+|+ +|..++ ..++.++..|++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGA-RRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTC-CTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCC-CCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 4568899999999999999999999999987665443 24566 678999999998 566554 45788899999999
Q ss_pred EcCC-ChHHHHHHHHH
Q psy2842 414 FADK-NALKVYKATQA 428 (486)
Q Consensus 414 ~~~~-~~~~~~~~i~~ 428 (486)
+.+. ++....+.+.+
T Consensus 165 ~~~~~~~~~~~~~i~~ 180 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQD 180 (437)
T ss_dssp CCCSCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHH
Confidence 8765 44455555543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.9e-11 Score=119.72 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=68.2
Q ss_pred CCCCceEEEEcCCCCCCCCceeEechHHHHHHHHHHHH---HccCCCCCeEEEEeCchh-hHHHHHHHHHHHHHhCcEEE
Q psy2842 338 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ---YFKLESAALSVISFLPLS-HIAAQTVDIYSVMTVAATLW 413 (486)
Q Consensus 338 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl~-h~~g~~~~~~~~l~~G~tv~ 413 (486)
...+++++++|||||||.||||+++|+++......... .+++ .++|++++.+|+. |..+ ....+.++..|++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~-~~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGG-RPGDTLHNAFGYGLFTGG-LGIHYGAERLGCMVV 166 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTC-CTTCEEEECSCCSSSHHH-HHHHHHHHHHTCEEE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCC-CCCCEEEEeccCcccccH-HHHHHHHHHcCCEEE
Confidence 45688999999999999999999999999876554433 4566 6789999999995 5544 456788899999999
Q ss_pred EcCC-ChHHHHHHHHH
Q psy2842 414 FADK-NALKVYKATQA 428 (486)
Q Consensus 414 ~~~~-~~~~~~~~i~~ 428 (486)
+.+. ++....+.+.+
T Consensus 167 ~~~~~~~~~~~~~i~~ 182 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRD 182 (443)
T ss_dssp CCCSCCHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHH
Confidence 8765 44445555443
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-11 Score=119.42 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=72.2
Q ss_pred CceeEEEeccCCCCHHHHHHHH-h-C-CCceeccccccccccccccCCCCCCCcC-ccccc------cCCceEEEECC-C
Q psy2842 127 DRCRVSLSGAAPISTELKRYFL-S-L-DIPICEVFGMSECAGAHTVSAPDDFKLD-GVGRT------IPGTQTKIVDP-D 195 (486)
Q Consensus 127 ~~lr~~~~gga~l~~~~~~~~~-~-~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~-s~G~p------~p~~~~~i~d~-~ 195 (486)
+++|.+++||+++++++.++++ + + |+++++.||+||+++++... ++ ++|+| .|+++++|+|+ +
T Consensus 231 ~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~------~~~~~G~~~~~~~~~~~~~v~ivD~~~ 304 (369)
T 3hgu_A 231 QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSL------LITSESQQVIYDSFSPFITYDVVDSIT 304 (369)
T ss_dssp HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC------CBCTTCSSCEEECCTTTEEEEEECTTT
T ss_pred CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecc------ccccCCCcccccCCCCCeEEEEECCCC
Confidence 7899999999999999999999 7 7 89999999999988765332 23 58999 99999999998 5
Q ss_pred CC-----CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeec
Q psy2842 196 EE-----GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFN 235 (486)
Q Consensus 196 ~~-----~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~ 235 (486)
+. +.|||.+..+.+. ..-.+++++|++..
T Consensus 305 g~~vp~G~~GEl~vt~l~~~-----------~~l~ry~tgD~~~~ 338 (369)
T 3hgu_A 305 AQTVEYGERGNVIVTHLSPW-----------AFYPRVAERDTAIR 338 (369)
T ss_dssp CSBCCTTCEEEEEEEEEETT-----------EEEEEEEEEEEEEE
T ss_pred CcCCCCCCceEEEEEEcCcc-----------cccccccCCceEEE
Confidence 54 5789998765432 11235677777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 486 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-23 | |
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-09 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 6e-20 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 4e-06 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-18 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-07 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 4e-16 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-07 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-11 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 6e-11 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-10 | |
| d2scpa_ | 174 | a.39.1.5 (A:) Sarcoplasmic calcium-binding protein | 0.001 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 102 bits (255), Expect = 1e-23
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 11/243 (4%)
Query: 186 GTQTKIVDPDEEGNGEICL--KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSD 243
G +T I+ ++ + + +E +V A L LG+++ V I PE +
Sbjct: 86 GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 145
Query: 244 LGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD-------KQLEKILKVKAQCP 296
L G + ++ SPEA C++ S + + + D+ L+K + + P
Sbjct: 146 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP 205
Query: 297 KLKAIVQYEGKPDKPGVISWDELMELGRAAPDE--SLDRVLETIATNECCTLVYTSGTEG 354
+ ++ I W E +L E S + E + + ++YTSG+ G
Sbjct: 206 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTG 265
Query: 355 ASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 414
K V+ + AA +Y + + + +Y + AT
Sbjct: 266 KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 325
Query: 415 ADK 417
+
Sbjct: 326 FEG 328
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 57.7 bits (139), Expect = 2e-09
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 18/146 (12%)
Query: 119 KVKQAMGLDRCRVSLSGAAPISTELKRYFLSL----DIPICEVFGMSECAGAHTVSAPDD 174
K + R+ S PI+ E ++ P+ + + +E G P
Sbjct: 366 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA 425
Query: 175 F--KLDGVGRTIPGTQTKIVDPDEE-----GNGEICLKEYEANVRTVAKAFLKLGLERYH 227
K R G Q +VD + G + + + A+ ER+
Sbjct: 426 IELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPG---QARTLFG-DHERFE 481
Query: 228 SVCIIGFNAPEWFYS-DLGAIYAGGF 252
F ++S D G+
Sbjct: 482 QTYFSTF--KNMYFSGDGARRDEDGY 505
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.7 bits (224), Expect = 6e-20
Identities = 44/253 (17%), Positives = 81/253 (32%), Gaps = 11/253 (4%)
Query: 191 IVDPDEEGNGE-ICLKEYEANVRTVAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIY 248
I + DE G G I KE V VA+ +G+ + +V + PE + L
Sbjct: 79 IFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 138
Query: 249 AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCPKLKA 300
G + ++ S + + D+ + + D+ + + P ++
Sbjct: 139 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRH 198
Query: 301 IVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVM 360
++ Y + ++ + + + L+YTSG+ GA K V
Sbjct: 199 VLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQ 258
Query: 361 LSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAA-TLWFADKNA 419
S A ++Y + + I T +Y + TL F A
Sbjct: 259 HSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPA 318
Query: 420 LKVYKATQAAIDR 432
Y ID
Sbjct: 319 YPNYSRYWDIIDE 331
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (110), Expect = 4e-06
Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 22/162 (13%)
Query: 106 PYTYRLVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLSL----DIPICEVFGMS 161
P RL++ S ++ L R S PI+ E+ ++ +IPI + + +
Sbjct: 341 PTALRLLKRAGDSYIENH-SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT 399
Query: 162 ECAGAHTVSAPDDF---KLDGVGRTIPGTQTKIVDPD-------EEGNGEICLKEYEANV 211
E K G ++DP+ G + +K A
Sbjct: 400 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK---AAW 456
Query: 212 RTVAKAFLKLGLERYHSVCIIGFNAPEWFYS-DLGAIYAGGF 252
+ A+ K +RY + + P ++++ D A G+
Sbjct: 457 PSFARTIWK-NHDRYLDTYLNPY--PGYYFTGDGAAKDKDGY 495
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 85.3 bits (210), Expect = 3e-18
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 2/184 (1%)
Query: 195 DEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 254
D I EY +A+A + GL H + + N+ ++F LGA++ G A
Sbjct: 41 DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 100
Query: 255 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVI 314
+ L+ + S + V K L+KIL V+ + P ++ I+ + K D G
Sbjct: 101 PANDIYNERELLNSMNISQPTVVFV-SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 159
Query: 315 SWDELMELGRAAPDESLDRVLETIATNE-CCTLVYTSGTEGASKPVMLSHDNITFNAACI 373
S + D V E+ ++ ++ +SG+ G K V L H +
Sbjct: 160 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 219
Query: 374 IQYF 377
Sbjct: 220 RDPI 223
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 51.8 bits (123), Expect = 1e-07
Identities = 28/222 (12%), Positives = 64/222 (28%), Gaps = 13/222 (5%)
Query: 14 LLYTTEPHGRTRIHLGEAGVAAQPPISVPGLLGRTAAQYPDQVALCQKQENGEWKKVTYK 73
++ ++ G + A + + +G T
Sbjct: 192 IMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLG 251
Query: 74 LQTTGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSL 133
G + + + + + + + + + + + ++
Sbjct: 252 YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 311
Query: 134 SGAAPISTELKRYFLSLDIP-ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIV 192
GA + +P I + +G++E A ++ D K VG+ +P + K+V
Sbjct: 312 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVV 371
Query: 193 DPDE------EGNGEICLK------EYEANVRTVAKAFLKLG 222
D D GE+C++ Y N K G
Sbjct: 372 DLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG 413
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 78.4 bits (192), Expect = 4e-16
Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 12/232 (5%)
Query: 186 GTQTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 245
G + + E R + LG+ V +GFN +
Sbjct: 25 GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 84
Query: 246 AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 305
G SP+ + L ++ + + D L + ++ + ++ V +
Sbjct: 85 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVL-LFDPNLLPLVEAIRGELKTVQHFVVMD 143
Query: 306 GKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN 365
K + + + L E C + YT+GT G K V+ SH
Sbjct: 144 EKAPEGYLAYEEALGEEADPVRVPERA----------ACGMAYTTGTTGLPKGVVYSHRA 193
Query: 366 ITFNAACIIQYFKLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
+ ++ + V + +P+ H+ A + + + A +
Sbjct: 194 LVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 245
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 51.8 bits (123), Expect = 1e-07
Identities = 24/195 (12%), Positives = 52/195 (26%), Gaps = 29/195 (14%)
Query: 77 TGVKRWIANYAKSTSLQHYMAYLEKNVSEPYTYRLVRWLILSKVKQAMGLDRCRVSLSGA 136
G K+ + + + E + L L R + G
Sbjct: 236 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG 295
Query: 137 APISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF-----------KLDGVGRTIP 185
+ L F + + + + +G++E + + G IP
Sbjct: 296 SAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIP 355
Query: 186 GTQTKIVDPD-------EEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPE 238
+ ++ D + + GE+ LK + + E S
Sbjct: 356 LVRLRVADEEGRPVPKDGKALGEVQLKGP-----WITGGYYGNE-EATRSA----LTPDG 405
Query: 239 WFYS-DLGAIYAGGF 252
+F + D+ G+
Sbjct: 406 FFRTGDIAVWDEEGY 420
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 63.5 bits (153), Expect = 2e-11
Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 8/219 (3%)
Query: 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 257
GN +E + +A F KLG+++ V + N E+F G
Sbjct: 47 GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106
Query: 258 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWD 317
++ + ++A ++ D + Q P +I
Sbjct: 107 PSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ--------SKLPTLKNIIVAG 158
Query: 318 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
E E + L + +++ L + G+ G SK + +HD+ ++ ++
Sbjct: 159 EAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218
Query: 378 KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 416
L+ + + + + + + + V+ + +
Sbjct: 219 WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 62.0 bits (149), Expect = 6e-11
Identities = 27/190 (14%), Positives = 50/190 (26%), Gaps = 18/190 (9%)
Query: 188 QTKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAI 247
+ P + E A V VA GL V ++ N+ + + L
Sbjct: 18 HCALAVPAR--GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH 75
Query: 248 YAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK 307
G A + + + V+ +Q+ + Q I+
Sbjct: 76 RLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI---FQSGSGARIIFLGDL 132
Query: 308 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 367
S+ +E + P + + YTSGT G K ++
Sbjct: 133 VRDGEPYSYGPPIEDPQREPA-------------QPAFIFYTSGTTGLPKAAIIPQRAAE 179
Query: 368 FNAACIIQYF 377
+
Sbjct: 180 SRVLFMSTQV 189
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 61.1 bits (147), Expect = 1e-10
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 22/180 (12%)
Query: 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 257
N ++ E +A+ F++ G+ + V I+ + + F L + AGG +
Sbjct: 45 ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPID 104
Query: 258 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWD 317
E + L S A + + + L +Q+ G+ + +
Sbjct: 105 IEYPKERIQYILDDSQARMLLTQKH------------LVHLIHNIQFNGQVEIFEEDTIK 152
Query: 318 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 377
P +S D ++YTSGT G K ML H I+
Sbjct: 153 IREGTNLHVPSKSTD----------LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL 202
|
| >d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]} Length = 174 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: EF Hand-like superfamily: EF-hand family: Calmodulin-like domain: Sarcoplasmic calcium-binding protein species: Sandworm (Nereis diversicolor) [TaxId: 126592]
Score = 37.3 bits (85), Expect = 0.001
Identities = 15/140 (10%), Positives = 33/140 (23%), Gaps = 10/140 (7%)
Query: 195 DEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFY--SDLGAIYAGGF 252
D + +G I ++E+ AK + + + + I F
Sbjct: 16 DFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTF 75
Query: 253 AAGMYTTNSPEACLHCLVTS--------DANICVVEDDKQLEKILKVKAQCPKLKAIVQY 304
M + D N + + +
Sbjct: 76 INSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFD 135
Query: 305 EGKPDKPGVISWDELMELGR 324
+ G++S +E + G
Sbjct: 136 AIDTNNDGLLSLEEFVIAGS 155
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 99.92 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 99.92 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 99.91 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 99.89 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 99.89 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 99.85 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 99.83 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 99.75 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 99.75 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 99.67 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 99.66 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 99.26 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 99.22 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 99.06 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=99.92 E-value=3.8e-24 Score=224.90 Aligned_cols=259 Identities=15% Similarity=0.222 Sum_probs=188.3
Q ss_pred CccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEE
Q psy2842 198 GNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 277 (486)
Q Consensus 198 ~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vv 277 (486)
...++||+++.+++.++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++...++++.+++..++++++
T Consensus 100 ~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~l 179 (643)
T d1pg4a_ 100 QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLV 179 (643)
T ss_dssp CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred CceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChh--------HHHHHHHHh--hcCCCCeEEEEecCCCCCC-----CcccHHHHHHhccCCCchhhHhhhccCCCCc
Q psy2842 278 VVEDDK--------QLEKILKVK--AQCPKLKAIVQYEGKPDKP-----GVISWDELMELGRAAPDESLDRVLETIATNE 342 (486)
Q Consensus 278 i~~~~~--------~~~~~~~~~--~~~~~~~~iv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (486)
++++.. ....+.... ...+.+.++++........ ....+.+.......... .....+++
T Consensus 180 i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~dd 253 (643)
T d1pg4a_ 180 ITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ------PEAMNAED 253 (643)
T ss_dssp EEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCC------CCCEETTS
T ss_pred EEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccchhhhhhhcccCcccC------CCCCCCCC
Confidence 987641 112222222 2345666777665443221 12223333322211111 12345789
Q ss_pred eEEEEcCCCCCCCCceeEechHHHHHHHHH-HHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC----
Q psy2842 343 CCTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK---- 417 (486)
Q Consensus 343 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~---- 417 (486)
+++|+|||||||.||||+++|++++..... ....+++ .++|++++.+|++|++|+...++.+|..|+++++.+.
T Consensus 254 ~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~ 332 (643)
T d1pg4a_ 254 PLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY-HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 332 (643)
T ss_dssp EEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTS
T ss_pred eEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCC-CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCC
Confidence 999999999999999999999997655444 4455677 7889999999999999998888999999999998653
Q ss_pred -ChHHHHHHHHHH------HhhhhHHHHhhhc--ccccccccccceeecCCCCCC
Q psy2842 418 -NALKVYKATQAA------IDRANLKSISNAQ--KIQKFEFLPADFSIPTGELGP 463 (486)
Q Consensus 418 -~~~~~~~~i~~~------i~~~~~~~l~~~~--~i~~~~l~p~~~~~~~g~ltp 463 (486)
++..+.+.+.+. ..+..+..+.... .....++.+.+....+|+..+
T Consensus 333 ~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~ 387 (643)
T d1pg4a_ 333 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPIN 387 (643)
T ss_dssp SSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCC
T ss_pred CCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCC
Confidence 344555555441 1233344444332 344556666666666676544
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.5e-24 Score=228.59 Aligned_cols=260 Identities=15% Similarity=0.196 Sum_probs=185.3
Q ss_pred CccceehhhhHhhHHHHHHHHH-HcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceE
Q psy2842 198 GNGEICLKEYEANVRTVAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANI 276 (486)
Q Consensus 198 ~~gel~~~~y~~~~~~~a~~l~-~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~v 276 (486)
....+||+++.++++++|..|. +.|+++|++|+++++|++++++.++|++++|++++|+++..+++++.+++..+++++
T Consensus 87 ~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~ 166 (640)
T d1ry2a_ 87 QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKV 166 (640)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred CeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccc
Confidence 3567999999999999999997 569999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcChh--------HHHHHHHHhhcCCCCeEEEEecCCCCC------CCcccHHHHHHhccCCCchhhHhhhccCCCCc
Q psy2842 277 CVVEDDK--------QLEKILKVKAQCPKLKAIVQYEGKPDK------PGVISWDELMELGRAAPDESLDRVLETIATNE 342 (486)
Q Consensus 277 vi~~~~~--------~~~~~~~~~~~~~~~~~iv~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (486)
+++.+.. ....+.......+.+............ .....+.......... .......+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d 240 (640)
T d1ry2a_ 167 VITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTY------YPCTPVDSED 240 (640)
T ss_dssp EEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSC------CCCCCEETTS
T ss_pred cccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccccccc------cccCCccccc
Confidence 9987641 234444455555555555544332211 1111111111111111 0111234688
Q ss_pred eEEEEcCCCCCCCCceeEechHHHHHHHHHHHH-HccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC----
Q psy2842 343 CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK---- 417 (486)
Q Consensus 343 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~---- 417 (486)
+++|+|||||||.||||+++|+++......... .+.+ .++|++++.+|++|++|....++.+|..|+++++.+.
T Consensus 241 ~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~ 319 (640)
T d1ry2a_ 241 PLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT-HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAY 319 (640)
T ss_dssp CCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC-CSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTS
T ss_pred CCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCC-CcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCC
Confidence 999999999999999999999998876655544 4556 7889999999999999998889999999999888654
Q ss_pred -ChHHHHHHHHHH------HhhhhHHHHhhh--cccccccccccceeecCCCCCCc
Q psy2842 418 -NALKVYKATQAA------IDRANLKSISNA--QKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 418 -~~~~~~~~i~~~------i~~~~~~~l~~~--~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
++..+.+.+.+. ..+..+..+... +.....++.+.++...+|+..+.
T Consensus 320 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~ 375 (640)
T d1ry2a_ 320 PNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAA 375 (640)
T ss_dssp SCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCH
T ss_pred CCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcH
Confidence 334455555441 112223333332 23345556666666667765443
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=99.91 E-value=2.8e-23 Score=213.91 Aligned_cols=271 Identities=17% Similarity=0.202 Sum_probs=194.8
Q ss_pred EEEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHh
Q psy2842 189 TKIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 268 (486)
Q Consensus 189 ~~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~ 268 (486)
+.+.|..+ ..++||+++++++.++|..|.+.|+++|++|+++++|+.++++.++|++++|++++|+++..+.+++.++
T Consensus 37 ~a~~d~~~--~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~ 114 (541)
T d1lcia_ 37 IAFTDAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNS 114 (541)
T ss_dssp EEEEETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHH
T ss_pred EEEEeCCC--CeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHH
Confidence 44555332 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHh-hhccCCCCceEEEE
Q psy2842 269 LVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR-VLETIATNECCTLV 347 (486)
Q Consensus 269 ~~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~ 347 (486)
++.+++++++++++ ..+.+..+...++..+.+++.+.....++..++................. ......++++++|+
T Consensus 115 l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 193 (541)
T d1lcia_ 115 MNISQPTVVFVSKK-GLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIM 193 (541)
T ss_dssp HHHHCCSEEEECGG-GHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEE
T ss_pred HHhccceEEeeecc-ccccchhccccccccceeeeecCCccccccchhhhhhhhhccccccccccCccccCCCCceEEEE
Confidence 99999999999875 66777788889999999888877766666666666555432211111111 11234468899999
Q ss_pred cCCCCCCCCceeEechHHHHHHHHHHHHHc---cCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHH
Q psy2842 348 YTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVY 423 (486)
Q Consensus 348 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~ 423 (486)
|||||||.||||+++|+++........... .. ..++++++.+|++|..+..... ..+..++..+.... ......
T Consensus 194 ~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 271 (541)
T d1lcia_ 194 NSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI-IPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFL 271 (541)
T ss_dssp EC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHHHHHH-HHHHHTCEEEECSSCCHHHHH
T ss_pred eeccccccccccccccchhhhhhhhhhhhcccccc-cccccccccccccccccccccc-cccccccccccccccccchhH
Confidence 999999999999999999987666554433 23 5689999999999998875544 44555555555444 433333
Q ss_pred HHHHHH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 424 KATQAA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 424 ~~i~~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
..+... ..+.....+..........+....+...+|+..+.
T Consensus 272 ~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~ 318 (541)
T d1lcia_ 272 RSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSK 318 (541)
T ss_dssp HHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCH
T ss_pred HHHhhhhccccccCccccccccccccccccccccceEEEeccccccc
Confidence 333321 11222344555555666666666777777776554
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=2.4e-22 Score=206.62 Aligned_cols=297 Identities=14% Similarity=0.140 Sum_probs=203.2
Q ss_pred ccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCCCccceehhhhHhhHHHH
Q psy2842 135 GAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKEYEANVRTV 214 (486)
Q Consensus 135 gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~~~gel~~~~y~~~~~~~ 214 (486)
|--|+|.++.+.+++.|.. + -||-.-.... .-.-. +..+++++. ++++||++++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~----~~tl~~~l~~---------~a~~~-pd~~Al~~~----~~~~Ty~el~~~v~~~ 63 (536)
T d1mdba_ 4 GFTPWPDELAETYRKNGCW--A----GETFGDLLRD---------RAAKY-GDRIAITCG----NTHWSYRELDTRADRL 63 (536)
T ss_dssp TCCCCCHHHHHHHHHTTSS--C----SCCHHHHHHH---------HHHHH-TTSEEEEET----TEEEEHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCC--C----CCCHHHHHHH---------HHHHC-CCCeEEEEC----CEeEcHHHHHHHHHHH
Confidence 3468899999998887631 1 1111000000 00011 124567764 5789999999999999
Q ss_pred HHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEEcChhH----HHHHHH
Q psy2842 215 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILK 290 (486)
Q Consensus 215 a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~~~----~~~~~~ 290 (486)
|..|.+.|+++|++|+++++|+.++++.++||+++|++.+|++|..+.+++.++++.++++++++++... ......
T Consensus 64 A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (536)
T d1mdba_ 64 AAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQ 143 (536)
T ss_dssp HHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHH
T ss_pred HHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999876421 122223
Q ss_pred HhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCceeEechHHHHHHH
Q psy2842 291 VKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 370 (486)
Q Consensus 291 ~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~ 370 (486)
.....+.+...+...... ...+++++.... .......++|+++|+|||||||.||||++||+++..++
T Consensus 144 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~ 211 (536)
T d1mdba_ 144 VQSKLPTLKNIIVAGEAE---EFLPLEDLHTEP---------VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSL 211 (536)
T ss_dssp HHHHCTTCCCEEEESCCT---TSEEGGGCCCCC---------CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHH
T ss_pred hhhccccccceeeeeccc---cccchhhcccCC---------cCCCccCccchHHhhhcccccccceecccccccccccc
Confidence 333444444443332221 111111111000 01123567899999999999999999999999999999
Q ss_pred HHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHH-HhCcEEEEcCC-ChHHHHHHHHHHH------hhhhHHHHhhhc
Q psy2842 371 ACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM-TVAATLWFADK-NALKVYKATQAAI------DRANLKSISNAQ 442 (486)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l-~~G~tv~~~~~-~~~~~~~~i~~~i------~~~~~~~l~~~~ 442 (486)
......+++ ..++++++.+|++|.+++...++..+ ..|.+++..+. ++......+.+.. .+..+..+....
T Consensus 212 ~~~~~~~~~-~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (536)
T d1mdba_ 212 KRSVEVCWL-DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290 (536)
T ss_dssp HHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred ccccccccc-ccccccccccccccccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhc
Confidence 998888888 78999999999999999765555444 44677666554 4444444444321 122233444444
Q ss_pred ccccccccccceeecCCCCCCc
Q psy2842 443 KIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 443 ~i~~~~l~p~~~~~~~g~ltpt 464 (486)
......+........+|+..+.
T Consensus 291 ~~~~~~~~~~~~~~~gG~~~~~ 312 (536)
T d1mdba_ 291 SSRRDDLSSLQVLQVGGAKFSA 312 (536)
T ss_dssp HHCCCCCTTCCEEEEESSCCCH
T ss_pred cccccccCcceeEEEecccccc
Confidence 4555556666666777775554
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=5.8e-22 Score=203.90 Aligned_cols=264 Identities=14% Similarity=0.184 Sum_probs=186.0
Q ss_pred EEECCCCCCccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhh
Q psy2842 190 KIVDPDEEGNGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 269 (486)
Q Consensus 190 ~i~d~~~~~~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~ 269 (486)
.+++.++++...+||+++++++.++|..|.+.|+++|++|+++++|+.++++.++|++++|++.+|++|..+.+++.+++
T Consensus 29 av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l 108 (534)
T d1v25a_ 29 VVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYIL 108 (534)
T ss_dssp EEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHH
T ss_pred EEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHH
Confidence 34443332345699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCceEEEEcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcC
Q psy2842 270 VTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYT 349 (486)
Q Consensus 270 ~~~~~~vvi~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T 349 (486)
+.+++++++++.. .......+....+.++..+...+.... ....... . ..... ......++++++++||
T Consensus 109 ~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~-------~~~~~~~~~~a~i~~T 177 (534)
T d1v25a_ 109 NHAEDKVLLFDPN-LLPLVEAIRGELKTVQHFVVMDEKAPE-GYLAYEE-A-LGEEA-------DPVRVPERAACGMAYT 177 (534)
T ss_dssp HHHTCSEEEECGG-GHHHHHHHGGGCSSCCEEEESSSCCCT-TCEEHHH-H-CCSCC-------CCCCCCTTSEEEEEEE
T ss_pred Hhhccccccccch-hhhhHHHHhhcccccceeEEeeccccc-ccccccc-c-ccccc-------cccccccCCcEEEEEe
Confidence 9999999998876 455566777788888777765544322 1111111 0 00000 1123457889999999
Q ss_pred CCCCCCCceeEechHHHHHHHHHHHHHccCC-CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHH
Q psy2842 350 SGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQ 427 (486)
Q Consensus 350 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~ 427 (486)
|||||.||||+++|.++.............. ...+++++.+|++|..++...+...+..|.++++.+. +.......+.
T Consensus 178 SGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 257 (534)
T d1v25a_ 178 TGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFD 257 (534)
T ss_dssp CSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHH
T ss_pred cCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeeccccccccccchhhh
Confidence 9999999999999999986554433332221 5788999999999999887666555555555554443 4444444443
Q ss_pred HH------HhhhhHHHHhhhcccccccccccceeecCCCCCCc
Q psy2842 428 AA------IDRANLKSISNAQKIQKFEFLPADFSIPTGELGPT 464 (486)
Q Consensus 428 ~~------i~~~~~~~l~~~~~i~~~~l~p~~~~~~~g~ltpt 464 (486)
+. ..+..+..+...+......+.+....+.+|+..|.
T Consensus 258 ~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~ 300 (534)
T d1v25a_ 258 GEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPR 300 (534)
T ss_dssp HTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCH
T ss_pred hccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCH
Confidence 31 11222344444444555566666666677765543
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=99.85 E-value=1.4e-20 Score=192.47 Aligned_cols=195 Identities=18% Similarity=0.227 Sum_probs=150.5
Q ss_pred ccceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEE
Q psy2842 199 NGEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 278 (486)
Q Consensus 199 ~gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi 278 (486)
.+++||++++.+++++|..|.+.|+++|++|+++++|+.++++.++|++++|++.+|+++..+++++.++++.+++++++
T Consensus 46 ~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li 125 (514)
T d1amua_ 46 NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 125 (514)
T ss_dssp TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCce
Q psy2842 279 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 358 (486)
++... .+. +........ .......... .... .....+..++++++|+|||||||.||+
T Consensus 126 ~~~~~-~~~---~~~~~~~~~-~~~~~~~~~~------------~~~~-----~~~~~p~~~~d~a~i~~TSGTTG~PK~ 183 (514)
T d1amua_ 126 TQKHL-VHL---IHNIQFNGQ-VEIFEEDTIK------------IREG-----TNLHVPSKSTDLAYVIYTSGTTGNPKG 183 (514)
T ss_dssp ECGGG-HHH---HTTSCCCSE-EEECCCSTTT------------TSCC-----SCCCCCCCTTSEEEEEEEC-----CEE
T ss_pred Eehhh-hhh---hhhhccccc-cccccccccc------------cccc-----ccCCCCCCcccceEEEEccCCCCCccc
Confidence 98762 222 122222221 1111111100 0000 011123457889999999999999999
Q ss_pred eEechHHHHHHHHHHHHHccCCCCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC
Q psy2842 359 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 417 (486)
Q Consensus 359 V~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~ 417 (486)
|+++|.++..........+.. ..+++.++.+|++|..++. .++.++..|+++++...
T Consensus 184 v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~~~~~~~~~~ 240 (514)
T d1amua_ 184 TMLEHKGISNLKVFFENSLNV-TEKDRIGQFASISFDASVW-EMFMALLTGASLYIILK 240 (514)
T ss_dssp EEEESHHHHHHHHHHHHTSCC-CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCH
T ss_pred ccccccccccccccccccccc-cccccccceeccccccccc-ccccccccccccccccc
Confidence 999999999999988888888 7889999999999998874 56777888888887655
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=99.83 E-value=6.3e-20 Score=186.19 Aligned_cols=213 Identities=15% Similarity=0.157 Sum_probs=160.6
Q ss_pred cceehhhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHHHhHcCCeeeecCCCCCHHHHHHhhhhCCceEEEE
Q psy2842 200 GEICLKEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 279 (486)
Q Consensus 200 gel~~~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g~~~~gg~~vpi~~~~~~~~l~~~~~~~~~~vvi~ 279 (486)
..+||+++++++.++|+.|.+.|+++|++|+++++|+.++++.++||+++|++++|+++..+++++.++++.++++++++
T Consensus 28 ~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~ 107 (503)
T d3cw9a1 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI 107 (503)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEE
T ss_pred cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHhhcCCCCeEEEEecCCCCCCCcccHHHHHHhccCCCchhhHhhhccCCCCceEEEEcCCCCCCCCcee
Q psy2842 280 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 359 (486)
+...... .+........+ ++... ++.......... .+.......++++++++|||||||.||+|
T Consensus 108 ~~~~~~~--~~~~~~~~~~~-~i~~~------------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~pK~v 171 (503)
T d3cw9a1 108 AVGRQVA--DAIFQSGSGAR-IIFLG------------DLVRDGEPYSYG-PPIEDPQREPAQPAFIFYTSGTTGLPKAA 171 (503)
T ss_dssp SSCHHHH--HHHHHTTCCCE-EEEHH------------HHEETTEECCCS-CCCCCCCCCTTSEEEEEEECCSSSSCEEE
T ss_pred ecchHHH--HHHhhhccccc-cccch------------hhhhhhcccccC-Cccccccchhhhhhhhccccccccccccc
Confidence 8764332 22233333333 33221 111111000000 00011234578899999999999999999
Q ss_pred EechHHHHHHHHHHHHHccCC-CCCeEEEEeCchhhHHHHHHHHHHHHHhCcEEEEcCC-ChHHHHHHHHH
Q psy2842 360 MLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKVYKATQA 428 (486)
Q Consensus 360 ~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~tv~~~~~-~~~~~~~~i~~ 428 (486)
+++|.++..........+... ...++.+..+|++|..+.....+.+...++++++... ++......+..
T Consensus 172 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (503)
T d3cw9a1 172 IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQ 242 (503)
T ss_dssp EEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHH
T ss_pred ccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccChHHhhhhhhh
Confidence 999999998887777665442 4568999999999998887777777777777777655 44444444443
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=99.75 E-value=1.1e-19 Score=190.63 Aligned_cols=158 Identities=14% Similarity=0.218 Sum_probs=133.5
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-C---CCceeccccccccccccccCCCC--CCCcCccccccCCceEEEECCC
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-L---DIPICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD 195 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~---g~~i~~~yG~TE~~~~~~~~~~~--~~~~~s~G~p~p~~~~~i~d~~ 195 (486)
+.+++++||.+++||+|+++++++++.+ + +++++++||+||+++.++...+. ..+.+++|+|+||++++|+|++
T Consensus 369 ~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~ 448 (643)
T d1pg4a_ 369 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNE 448 (643)
T ss_dssp TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTT
T ss_pred cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCC
Confidence 4567799999999999999999999887 6 47899999999999877765544 3478999999999999999998
Q ss_pred CC-----Cccceehh--------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCC
Q psy2842 196 EE-----GNGEICLK--------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYT 258 (486)
Q Consensus 196 ~~-----~~gel~~~--------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~ 258 (486)
|. +.||+.++ +|+++.+++.+.+.. ....|+++||++..+.++++.++| +++.+|.. |+|
T Consensus 449 g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~-~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~r--i~p 525 (643)
T d1pg4a_ 449 GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS-TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHR--LGT 525 (643)
T ss_dssp CCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS-SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEE--EEH
T ss_pred CCCCCCCceEEEEEecCCCcccccccCChhhchhhhcc-cCCCeEEcCCEEEECCCceEEEecccccEEEECCEE--ECH
Confidence 76 46888875 589999888777643 223499999999999999999988 78889998 688
Q ss_pred CCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 259 TNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 259 ~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.+.|+.+..+..+.++.++.++++
T Consensus 526 ~eIE~~l~~~p~V~eaaVvg~~d~ 549 (643)
T d1pg4a_ 526 AEIESALVAHPKIAEAAVVGIPHA 549 (643)
T ss_dssp HHHHHHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHHHHhCCCcceEEEEEEECC
Confidence 888888888888889988888765
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=5.4e-20 Score=193.33 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=126.3
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHh-CC---CceeccccccccccccccCCCC---CCCcCccccccCCceEEEECC
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLS-LD---IPICEVFGMSECAGAHTVSAPD---DFKLDGVGRTIPGTQTKIVDP 194 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g---~~i~~~yG~TE~~~~~~~~~~~---~~~~~s~G~p~p~~~~~i~d~ 194 (486)
+.++|++||.+++||+|+++++.+++++ +| ++++++||+||++..+...... ..+++++|+|+||++++|+|+
T Consensus 356 ~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~ 435 (640)
T d1ry2a_ 356 ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDP 435 (640)
T ss_dssp SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECS
T ss_pred ccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeC
Confidence 4567899999999999999999999987 64 5799999999998776655443 347899999999999999998
Q ss_pred CCC-------Cccceeh--------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeee
Q psy2842 195 DEE-------GNGEICL--------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAG 255 (486)
Q Consensus 195 ~~~-------~~gel~~--------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vp 255 (486)
++. ..|++.. .+|+++++++++.+..+ ...|.+|||++..+.++++.++| +++.+|..
T Consensus 436 ~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~-~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~-- 512 (640)
T d1ry2a_ 436 NTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP-YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHR-- 512 (640)
T ss_dssp SSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS-STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCC--
T ss_pred CCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccC-CCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEE--
Confidence 654 3466664 48999999999888543 12399999999999999999988 77888888
Q ss_pred cCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 256 MYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 256 i~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
|+|.+.|+.+..+..+.++.++.++++
T Consensus 513 I~p~eIE~~l~~~p~V~~a~Vvg~~d~ 539 (640)
T d1ry2a_ 513 LSTAEIEAAIIEDPIVAECAVVGFNDD 539 (640)
T ss_dssp BCHHHHHHHHHSSTTEEEEEEECCCCC
T ss_pred ECHHHHHHHHHhCCCccEEEEEEEECC
Confidence 677777777766666666666665554
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=1.3e-18 Score=178.66 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=124.4
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCC-----------CcCccccccCCceEE
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF-----------KLDGVGRTIPGTQTK 190 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~-----------~~~s~G~p~p~~~~~ 190 (486)
...++++||.+++||+++++++.++++++|..++++||+||+++.++.+..... +.+++|+|+||++++
T Consensus 281 ~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~ 360 (534)
T d1v25a_ 281 TGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR 360 (534)
T ss_dssp HTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEE
T ss_pred ccccccceeEEEEecCCCCHHHHHHHHHhCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEE
Confidence 345679999999999999999999999999999999999999988876543321 357899999999999
Q ss_pred EECCCCC-------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCee
Q psy2842 191 IVDPDEE-------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFA 253 (486)
Q Consensus 191 i~d~~~~-------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~ 253 (486)
|+|+++. +.|||.++ ||+++++.++..+..+| |.+|||++..+.++.+.++| +++.+|..
T Consensus 361 i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg---~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~ 437 (534)
T d1v25a_ 361 VADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG---FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEW 437 (534)
T ss_dssp EECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTS---CEEEEEEEEECTTCCEEEEEESSCEEEETTEE
T ss_pred EECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCC---CCccCceeEECCCccEEEecccccEEEECCEE
Confidence 9998875 35888865 79999999999887777 99999999999999888888 77888888
Q ss_pred eecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 254 AGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 254 vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
++|.+.|+.+..+..+.++.++.++++
T Consensus 438 --v~~~eIE~~l~~~~~V~~a~v~~~~~~ 464 (534)
T d1v25a_ 438 --ISSVDLENALMGHPKVKEAAVVAIPHP 464 (534)
T ss_dssp --EEHHHHHCC----------CEEEEECS
T ss_pred --ECHHHHHHHHHhCCCcceEEEEEEECC
Confidence 577777777777777778888777765
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=99.66 E-value=2.3e-17 Score=169.15 Aligned_cols=167 Identities=22% Similarity=0.307 Sum_probs=133.9
Q ss_pred HHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCC-ceeccccccccccccccCCCCCCCcCccccccCCce
Q psy2842 111 LVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDI-PICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 188 (486)
Q Consensus 111 ~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~-~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~ 188 (486)
++..++........+++++|.+++||+++++++.+++.+ ++. .++++||+||+++.++.+.....+++++|+|+|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~ 367 (541)
T d1lcia_ 288 LFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 367 (541)
T ss_dssp HHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCE
T ss_pred ccccccccccccccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccccccCCCE
Confidence 333444444455667799999999999999999999987 664 689999999999999988877788999999999999
Q ss_pred EEEECCCCC------Cccceehh------hhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCe
Q psy2842 189 TKIVDPDEE------GNGEICLK------EYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGF 252 (486)
Q Consensus 189 ~~i~d~~~~------~~gel~~~------~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~ 252 (486)
++|+|.|.+ +.|||+++ ||+++++.+...+..+| |.+|||++..+.++.+.+.| +++.+|.
T Consensus 368 ~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~---~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~ 444 (541)
T d1lcia_ 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDG---WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 444 (541)
T ss_dssp EEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTS---CEEEEEEEEECTTCCEEEC-----CEEETTE
T ss_pred EEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCc---cccCCCeeEEcCCeEEEEeeeecCEEEECCE
Confidence 999996542 57888764 89999998888776666 99999999999999888887 6778888
Q ss_pred eeecCCCCCHHHHHHhhhhCCceEEEEcCh
Q psy2842 253 AAGMYTTNSPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 253 ~vpi~~~~~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
. |+|.+.|+.+..+..+.++.++.++++
T Consensus 445 ~--v~~~~IE~~l~~~p~V~~~~v~~~~~~ 472 (541)
T d1lcia_ 445 Q--VAPAELESILLQHPNIFDAGVAGLPDD 472 (541)
T ss_dssp E--ECHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred E--ECHHHHHHHHHhCCCccEEEEEEEECC
Confidence 8 677778888877777777777766654
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=99.26 E-value=1.1e-12 Score=133.04 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=125.8
Q ss_pred hcCCCCceeEEEeccCCCCHHHHHHHHhCCCceeccccccccccccccCCCCCC---CcCccccccCCceEEEECCCCC-
Q psy2842 122 QAMGLDRCRVSLSGAAPISTELKRYFLSLDIPICEVFGMSECAGAHTVSAPDDF---KLDGVGRTIPGTQTKIVDPDEE- 197 (486)
Q Consensus 122 ~~~~l~~lr~~~~gga~l~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~---~~~s~G~p~p~~~~~i~d~~~~- 197 (486)
...++.+++.+++||+++++++.+++.+ ++.++++||+||++.+++....... ..++.|++.++.++.+.|+++.
T Consensus 272 ~~~~~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 350 (514)
T d1amua_ 272 DPERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL 350 (514)
T ss_dssp CTTTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCB
T ss_pred cccccccccEEEEecccCCHHHhhhhcc-ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeeccccee
Confidence 4456799999999999999999987765 6789999999999988776554433 4567899999999999998875
Q ss_pred ----Cccceehh------hhHhhHHHHHHHHHHcCC---cccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCC
Q psy2842 198 ----GNGEICLK------EYEANVRTVAKAFLKLGL---ERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTN 260 (486)
Q Consensus 198 ----~~gel~~~------~y~~~~~~~a~~l~~~g~---~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~ 260 (486)
+.|||.++ +|++++..+...|..... ..|.+|||++..+.++++.++| +++.+|.. |+|..
T Consensus 351 ~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~--i~p~~ 428 (514)
T d1amua_ 351 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHR--VELEE 428 (514)
T ss_dssp CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEE--EEHHH
T ss_pred cCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEE--ECHHH
Confidence 56788775 899999999988855432 3488999999999999888877 66778888 56666
Q ss_pred CHHHHHHhhhhCCceEEEEcCh
Q psy2842 261 SPEACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 261 ~~~~l~~~~~~~~~~vvi~~~~ 282 (486)
.|+.+..+..+.++.++..+++
T Consensus 429 IE~~l~~~~~V~~~~V~~~~~~ 450 (514)
T d1amua_ 429 VESILLKHMYISETAVSVHKDH 450 (514)
T ss_dssp HHHHHTTSTTEEEEEEEEEECT
T ss_pred HHHHHHhCCCccEEEEEEEECC
Confidence 6777766666667766666554
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=6.4e-12 Score=127.67 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=121.4
Q ss_pred HHHHHHhhhhhhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCC-CCCcCccccccCCc-
Q psy2842 111 LVRWLILSKVKQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGT- 187 (486)
Q Consensus 111 ~~~~l~~~~~~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~-~~~~~s~G~p~p~~- 187 (486)
.+..+..........+++++.+++||+++++.+.+++.. +|......||.+|.+..+...... ....+++|+|+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~ 361 (536)
T d1mdba_ 282 LAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYD 361 (536)
T ss_dssp HHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTC
T ss_pred hhhhhhhhccccccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCCCCcc
Confidence 334444445555667799999999999999999999988 899999999999987665544332 23578999998755
Q ss_pred eEEEECCCCC-----Cccceeh------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCe
Q psy2842 188 QTKIVDPDEE-----GNGEICL------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGF 252 (486)
Q Consensus 188 ~~~i~d~~~~-----~~gel~~------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~ 252 (486)
.+.+.++++. +.||+.+ .+|+++...+...+.++| |.++||++..+.++.+.++| +++.+|.
T Consensus 362 ~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~---~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~ 438 (536)
T d1mdba_ 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDG---FYRTGDIVRLTRDGYIVVEGRAKDQINRGGE 438 (536)
T ss_dssp EEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTS---CEEEEEEEEECTTSCEEEEEEGGGCEECSSC
T ss_pred eEEEEcCCCCeecccccceeecCCCccccccccccccccccccccC---ccccCccccccCCCceecCCCcceEEEECCE
Confidence 5555555554 5778776 489999998888887667 99999999999999888888 5667777
Q ss_pred eeecCCCCCHHHHHHhhhhCCceEEEEc
Q psy2842 253 AAGMYTTNSPEACLHCLVTSDANICVVE 280 (486)
Q Consensus 253 ~vpi~~~~~~~~l~~~~~~~~~~vvi~~ 280 (486)
. |+|.+.|+.+..+..+.++.++..+
T Consensus 439 ~--i~p~~IE~~l~~~p~V~~a~vvg~~ 464 (536)
T d1mdba_ 439 K--VAAEEVENHLLAHPAVHDAAMVSMP 464 (536)
T ss_dssp E--ECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred E--ECHHHHHHHHHhCCCccEEEEEEEE
Confidence 7 4555555555555545554444443
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=99.06 E-value=4.7e-12 Score=127.24 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=118.5
Q ss_pred hhcCCCCceeEEEeccCCCCHHHHHHHHh-CCCceeccccccccccccccCCCCCCCcCccccccCCceEEEECCCCC--
Q psy2842 121 KQAMGLDRCRVSLSGAAPISTELKRYFLS-LDIPICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEE-- 197 (486)
Q Consensus 121 ~~~~~l~~lr~~~~gga~l~~~~~~~~~~-~g~~i~~~yG~TE~~~~~~~~~~~~~~~~s~G~p~p~~~~~i~d~~~~-- 197 (486)
.+...+++||.+++||+++++++..++.. ++..+.+.||+||++..+...........+.+.+.+.....+.+..+.
T Consensus 266 ~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (503)
T d3cw9a1 266 GSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIV 345 (503)
T ss_dssp CTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBC
T ss_pred cccccccceEEEEeccccccccccccccccccccccccccccccceeeeeccccccccccccccccceeeeeecccCccc
Confidence 34556689999999999999999999988 788999999999999888776665555555555555555555444433
Q ss_pred ---Cccceeh-------hhhHhhHHHHHHHHHHcCCcccceEEEEeecCCchhhhhHH----HhHcCCeeeecCCCCCHH
Q psy2842 198 ---GNGEICL-------KEYEANVRTVAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGGFAAGMYTTNSPE 263 (486)
Q Consensus 198 ---~~gel~~-------~~y~~~~~~~a~~l~~~g~~~~~~vg~~~~~~~~~~~~~~g----~~~~gg~~vpi~~~~~~~ 263 (486)
+.|++.. .+|+.+++.+++.+ .+| |.++||++..+.++.+.++| +++.+|.. |+|.+.|+
T Consensus 346 ~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g---~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~--v~~~~IE~ 419 (503)
T d3cw9a1 346 ANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDG---WYRTSDVAVWTPEGTVRILGRVDDMIISGGEN--IHPSEIER 419 (503)
T ss_dssp CTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETT---EEEEEEEEEECTTSCEEEEEESSCCEEETTEE--ECHHHHHH
T ss_pred CCCccccccccccccccccccCChhhhHHHh-cCC---ceecccccccccCCeEEeCCCcCCeEEECCEE--ECHHHHHH
Confidence 2333332 37888888888887 456 99999999999999998888 67788888 57777777
Q ss_pred HHHHhhhhCCceEEEEcCh
Q psy2842 264 ACLHCLVTSDANICVVEDD 282 (486)
Q Consensus 264 ~l~~~~~~~~~~vvi~~~~ 282 (486)
.+..+..+.++.++..+++
T Consensus 420 ~l~~~p~V~~~~v~~~~~~ 438 (503)
T d3cw9a1 420 VLGTAPGVTEVVVIGLADQ 438 (503)
T ss_dssp HHTTSTTEEEEEEEEEEET
T ss_pred HHHhCCCccEEEEEEEECC
Confidence 7777777777777766654
|