Psyllid ID: psy2844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccEEEEcccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcEEEEccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MESLQLNIQRLKEYKSklivfprrekkklrkgeatpeeRKVATqlkgplmpirqskpkskaripseAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ
Flexible Loop (DISEMBL)
meslqlniqrlkeyksklivfprrekkklrkgeatpeerkvatqlkgplmpirqskpkskaripseaEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ
Low Complexity Region (SEG)
MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ
Disordered region (IsUnstruct)
****************************************************************************************************
Disordered Region (DISOPRED)
*ESLQLNIQRLKEYKSKLIVF*******************VATQLKGPLMPIRQ*****************SAFQTLRMARADAKLVGIR***A******
Disordered Region (DISEMBL)
MESLQLNIQRLKEYKSKLIVFPRRE****************ATQLKGPLMPIR*************AEKKFSAFQTLRMARADAKLVGIRE*********
Disordered Region (DISPRO)
MESLQLNIQRLKEYKSKLIVFPRREK*********PEERKVATQLKGPLMPIRQS****KARIPSEAEKKFSAFQTLRMARADAKLVGIREKK*R*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q90Z10	211	60S ribosomal protein L13	yes	N/A	0.98	0.464	0.616	2e-26
P41125	211	60S ribosomal protein L13	yes	N/A	0.98	0.464	0.616	4e-26
Q962U1	219	60S ribosomal protein L13	N/A	N/A	0.96	0.438	0.612	1e-25
Q56JZ1	211	60S ribosomal protein L13	yes	N/A	0.98	0.464	0.606	2e-25
P47963	211	60S ribosomal protein L13	yes	N/A	0.98	0.464	0.606	2e-25
P26373	211	60S ribosomal protein L13	yes	N/A	0.98	0.464	0.595	3e-25
P41123	211	60S ribosomal protein L13	yes	N/A	0.98	0.464	0.606	8e-25
Q90YV5	211	60S ribosomal protein L13	N/A	N/A	0.98	0.464	0.595	1e-24
Q9Z313	211	60S ribosomal protein L13	yes	N/A	0.98	0.464	0.595	4e-24
P41126	218	60S ribosomal protein L13	yes	N/A	0.97	0.444	0.606	4e-23

>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 79/99 (79%), Gaps = 1/99 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           ESLQ N+QRLKEY++KLI+FPR+  K  +KG++T EE K+ATQL GP+MPI++   K KA
Sbjct: 108 ESLQANVQRLKEYRTKLIIFPRKAAKP-KKGDSTEEELKMATQLTGPVMPIKKVHKKEKA 166

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           R+ SE EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVISEDEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

Danio rerio (taxid: 7955)

>sp|P41125|RL13_CHICK 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           ESLQ N+QRLKEY+SKLI+FPR+     +KG+++PEE K+ATQL GP+MPIR    + KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSPEELKMATQLSGPVMPIRNVFKREKA 166

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           R+ SE EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVISEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

Gallus gallus (taxid: 9031)

>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 79/98 (80%), Gaps = 2/98 (2%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ESLQ+N+QRLKEY+++LI+FP+   KK+ KGEA  EERK+ATQL+GPLMP++Q  PKS 
Sbjct: 106 VESLQVNVQRLKEYRARLILFPK--GKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSI 163

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           AR  +E EK F A+Q LR AR+ AKLVGIR K+ ++AA
Sbjct: 164 ARAITEEEKDFKAYQYLRGARSIAKLVGIRAKRLKDAA 201

Spodoptera frugiperda (taxid: 7108)

>sp|Q56JZ1|RL13_BOVIN 60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

Bos taurus (taxid: 9913)

>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

Mus musculus (taxid: 10090)

>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MP+R    K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPVRNVYKKEKA 166

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

Homo sapiens (taxid: 9606)

>sp|P41123|RL13_RAT 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 76/99 (76%), Gaps = 1/99 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           R  +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

Rattus norvegicus (taxid: 10116)

>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           ESL +N+QRLK Y+SKLI+FPR+     +KG++T EE K+ATQL GP+MPI+    K KA
Sbjct: 108 ESLHVNVQRLKVYRSKLILFPRKVSAP-KKGDSTEEEVKMATQLTGPVMPIKIVHKKEKA 166

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           R+ +E EKKF+AF  LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RMITEEEKKFNAFANLRMARANARLFGIRAKRAKEAAEQ 205

Ictalurus punctatus (taxid: 7998)

>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 76/99 (76%), Gaps = 1/99 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+M IR    K KA
Sbjct: 108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMRIRNVYKKEKA 166

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct: 167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

Cricetulus griseus (taxid: 10029)

>sp|P41126|RL13_DROME 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=2 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 2/99 (2%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKS- 59
           +ES Q NIQRLKEY+SKLI+FP  EKK +R GE++ EE K+ATQLKGP++PI+  +P   
Sbjct: 106 LESRQRNIQRLKEYRSKLILFPINEKK-IRAGESSLEECKLATQLKGPVLPIKNEQPAVV 164

Query: 60  KARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           + R  ++ EKKF AF TLR AR DA+LVGIR K+A+EAA
Sbjct: 165 EFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAKEAA 203

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
110671512	221	putative ribosomal protein L13 [Diaphori	0.98	0.443	1.0	2e-46
121511988	221	ribosomal protein L13 [Xenopsylla cheopi	0.98	0.443	0.693	2e-30
91082597	220	PREDICTED: similar to ribosomal protein	1.0	0.454	0.65	6e-28
389032521	220	60S ribosomal protein L13 [Ctenocephalid	0.97	0.440	0.693	7e-28
264667423	222	ribosomal protein L13 [Chrysomela tremul	0.98	0.441	0.642	8e-28
332373968	220	unknown [Dendroctonus ponderosae]	0.98	0.445	0.663	2e-27
121543781	224	putative ribosomal protein L13 [Maconell	0.98	0.437	0.642	1e-26
381414105	185	ribosomal protein L13, partial [Merizodu	0.89	0.481	0.733	3e-26
315115439	220	ribosomal protein L13 [Euphydryas aurini	0.96	0.436	0.642	2e-25
70909693	220	ribosomal protein L13e [Agriotes lineatu	0.98	0.445	0.64	3e-25

>gi|110671512|gb|ABG82007.1| putative ribosomal protein L13 [Diaphorina citri]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK
Sbjct: 107 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 166

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA
Sbjct: 167 ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 204

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121511988|gb|ABM55445.1| ribosomal protein L13 [Xenopsylla cheopis]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 85/98 (86%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ESLQ N+QRLKEY+SKLI+FPR EKKKLRKGEAT +E KVATQL+G +MPI+Q+  ++K
Sbjct: 106 VESLQKNVQRLKEYRSKLILFPRHEKKKLRKGEATEDECKVATQLQGIVMPIKQTAVRTK 165

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           AR+ +E EKKFSAF  LR ARAD +LVGIREK+A++AA
Sbjct: 166 ARVVTEDEKKFSAFTALRKARADQRLVGIREKRAKDAA 203

Source: Xenopsylla cheopis

Species: Xenopsylla cheopis

Genus: Xenopsylla

Family: Pulicidae

Order: Siphonaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082597|ref|XP_967899.1| PREDICTED: similar to ribosomal protein L13e [Tribolium castaneum] gi|270015025|gb|EFA11473.1| hypothetical protein TcasGA2_TC014183 [Tribolium castaneum]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 80/100 (80%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ES+ LN QRLKEY+SKLI+FP   KKKLR GEAT EERKVATQL   ++PIRQS  ++K
Sbjct: 107 VESVLLNAQRLKEYRSKLILFPINNKKKLRPGEATEEERKVATQLTSEVLPIRQSAVRTK 166

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
           AR+P+E E+ F+AF TLR ARADA+ VGIR K+A+EAA  
Sbjct: 167 ARVPTEEEQNFNAFITLRKARADARFVGIRAKRAKEAADN 206

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389032521|gb|AFK82397.1| 60S ribosomal protein L13 [Ctenocephalides felis]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 82/98 (83%), Gaps = 1/98 (1%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ESLQ NIQRLKEY+SKLI+FPR   KKL KGEAT EE KVA+QL+G +MPI+Q+  KSK
Sbjct: 106 VESLQQNIQRLKEYRSKLILFPR-GGKKLHKGEATEEECKVASQLEGVVMPIKQTSVKSK 164

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           AR+ +E EKKFSAF TLR ARAD +LVGIREK+ ++AA
Sbjct: 165 ARVITEDEKKFSAFTTLRKARADQRLVGIREKRVKDAA 202

Source: Ctenocephalides felis

Species: Ctenocephalides felis

Genus: Ctenocephalides

Family: Pulicidae

Order: Siphonaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667423|gb|ACY71297.1| ribosomal protein L13 [Chrysomela tremula]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 80/98 (81%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ES+QLN QRLKEY+SKLI+FP    KKLR G+AT EERKVATQL+G ++PIRQ   ++K
Sbjct: 106 VESIQLNTQRLKEYRSKLILFPVHNNKKLRSGDATEEERKVATQLQGEVLPIRQPSIRAK 165

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           AR+P+E EKKF A+  LR ARADA+LVGIR K+ ++AA
Sbjct: 166 ARVPTEEEKKFEAYVALRKARADARLVGIRAKRVKDAA 203

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373968|gb|AEE62125.1| unknown [Dendroctonus ponderosae]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 80/98 (81%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ES+QLN QRLKEYKSKLI+FP   KKKLR GEAT EERKVATQL G ++PIRQ   K+K
Sbjct: 107 VESVQLNAQRLKEYKSKLILFPIHPKKKLRAGEATEEERKVATQLLGEVLPIRQPTIKTK 166

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           AR+P+E +KK + + TLR ARADA+LVGIR K+ ++AA
Sbjct: 167 ARVPNEEDKKLNVYVTLRKARADARLVGIRAKRVKDAA 204

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543781|gb|ABM55560.1| putative ribosomal protein L13 [Maconellicoccus hirsutus]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 79/98 (80%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ESLQ+N+QRLKEYKSKLI+FP+   KKLRKGEA+ EERKVA+QLKG ++PI+Q K   K
Sbjct: 107 VESLQVNVQRLKEYKSKLILFPKHANKKLRKGEASEEERKVASQLKGEVLPIKQGKQLVK 166

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
            R  +  EK+F+AF  ++ AR DAKL GIREKKA+EAA
Sbjct: 167 PRAITAGEKRFNAFSVVKQARVDAKLFGIREKKAKEAA 204

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|381414105|gb|AFG29034.1| ribosomal protein L13, partial [Merizodus soledadinus]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 76/90 (84%), Gaps = 1/90 (1%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ESLQLN Q LKEY+SKLI+FPR EK+KLRKGEAT EERKVATQLK  +MPIR S  KSK
Sbjct: 96  VESLQLNAQGLKEYRSKLILFPRHEKQKLRKGEATAEERKVATQLKTEVMPIR-SVAKSK 154

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIR 90
           AR+ S+AEK+F A+  LR ARADA+LVGIR
Sbjct: 155 ARVISDAEKEFKAYVYLRKARADARLVGIR 184

Source: Merizodus soledadinus

Species: Merizodus soledadinus

Genus: Merizodus

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115439|gb|ADT80692.1| ribosomal protein L13 [Euphydryas aurinia]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 79/98 (80%), Gaps = 2/98 (2%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +ESLQ N+QRLKEY+++LI+FP+   KK+ KGEA  EERKVATQL GPLMPI+QS PKS 
Sbjct: 106 VESLQTNVQRLKEYRARLILFPK--GKKVLKGEANEEERKVATQLSGPLMPIQQSAPKSV 163

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           AR+ +E EK F A+Q LR AR+ AKLVGIR K+ ++AA
Sbjct: 164 ARVITEEEKDFKAYQYLRGARSIAKLVGIRAKRLKDAA 201

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909693|emb|CAJ17269.1| ribosomal protein L13e [Agriotes lineatus]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 78/100 (78%), Gaps = 2/100 (2%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQ--SKPK 58
           +ES+Q+N QRLKEY+SKLI+FP   KKKLR GEAT EERKVA+QL G ++PI Q     K
Sbjct: 107 VESIQVNAQRLKEYRSKLILFPVHNKKKLRAGEATEEERKVASQLVGEVIPITQVLXMKK 166

Query: 59  SKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
            KAR+P+E EK FSAF TLR ARADA+LVGI  K+ ++AA
Sbjct: 167 PKARVPTEEEKXFSAFTTLRKARADARLVGIXAKRQKDAA 206

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
ZFIN|ZDB-GENE-031007-1	211	rpl13 "ribosomal protein L13"	0.98	0.464	0.616	9.4e-27
UNIPROTKB|P41125	211	RPL13 "60S ribosomal protein L	0.98	0.464	0.616	1.2e-26
UNIPROTKB|F1MK30	293	RPL13 "60S ribosomal protein L	0.98	0.334	0.606	8.4e-26
UNIPROTKB|Q56JZ1	211	RPL13 "60S ribosomal protein L	0.98	0.464	0.606	8.4e-26
UNIPROTKB|E2R4F5	211	RPL13 "Uncharacterized protein	0.98	0.464	0.606	8.4e-26
MGI|MGI:105922	211	Rpl13 "ribosomal protein L13"	0.98	0.464	0.606	8.4e-26
UNIPROTKB|P26373	211	RPL13 "60S ribosomal protein L	0.98	0.464	0.595	1.1e-25
RGD|2322065	211	LOC100360491 "60S ribosomal pr	0.98	0.464	0.606	2.2e-25
RGD|621179	211	Rpl13 "ribosomal protein L13"	0.98	0.464	0.606	2.2e-25
UNIPROTKB|I3LSD3	211	RPL13 "60S ribosomal protein L	0.98	0.464	0.585	3.6e-25

ZFIN|ZDB-GENE-031007-1 rpl13 "ribosomal protein L13" [Danio rerio (taxid:7955)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 61/99 (61%), Positives = 79/99 (79%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY++KLI+FPR+  K  +KG++T EE K+ATQL GP+MPI++   K KA
Sbjct:   108 ESLQANVQRLKEYRTKLIIFPRKAAKP-KKGDSTEEELKMATQLTGPVMPIKKVHKKEKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R+ SE EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RVISEDEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

UNIPROTKB|P41125 RPL13 "60S ribosomal protein L13" [Gallus gallus (taxid:9031)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 61/99 (61%), Positives = 78/99 (78%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++PEE K+ATQL GP+MPIR    + KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSPEELKMATQLSGPVMPIRNVFKREKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R+ SE EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RVISEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|F1MK30 RPL13 "60S ribosomal protein L13" [Bos taurus (taxid:9913)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 60/99 (60%), Positives = 77/99 (77%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q56JZ1 RPL13 "60S ribosomal protein L13" [Bos taurus (taxid:9913)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 60/99 (60%), Positives = 77/99 (77%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2R4F5 RPL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 60/99 (60%), Positives = 77/99 (77%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:105922 Rpl13 "ribosomal protein L13" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 60/99 (60%), Positives = 77/99 (77%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|P26373 RPL13 "60S ribosomal protein L13" [Homo sapiens (taxid:9606)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 59/99 (59%), Positives = 77/99 (77%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MP+R    K KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPVRNVYKKEKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R+ +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|2322065 LOC100360491 "60S ribosomal protein L13-like" [Rattus norvegicus (taxid:10116)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 60/99 (60%), Positives = 76/99 (76%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R  +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|621179 Rpl13 "ribosomal protein L13" [Rattus norvegicus (taxid:10116)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 60/99 (60%), Positives = 76/99 (76%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    K KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKKEKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R  +E EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RAITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0015934 "large ribosomal subunit" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;NAS

UNIPROTKB|I3LSD3 RPL13 "60S ribosomal protein L13" [Sus scrofa (taxid:9823)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 58/99 (58%), Positives = 77/99 (77%)

Query:     2 ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
             ESLQ N+QRLKEY+SKLI+FPR+     +KG+++ EE K+ATQL GP+MPIR    + KA
Sbjct:   108 ESLQANVQRLKEYRSKLILFPRKPSAP-KKGDSSAEELKLATQLTGPVMPIRNVYKREKA 166

Query:    62 RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAAGQ 100
             R+ ++ EK F AF +LRMARA+A+L GIR K+A+EAA Q
Sbjct:   167 RVITDEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQ 205

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z313	RL13_CRIGR	No assigned EC number	0.5959	0.98	0.4644	yes	N/A
P26373	RL13_HUMAN	No assigned EC number	0.5959	0.98	0.4644	yes	N/A
Q90Z10	RL13_DANRE	No assigned EC number	0.6161	0.98	0.4644	yes	N/A
P47963	RL13_MOUSE	No assigned EC number	0.6060	0.98	0.4644	yes	N/A
Q56JZ1	RL13_BOVIN	No assigned EC number	0.6060	0.98	0.4644	yes	N/A
P41126	RL13_DROME	No assigned EC number	0.6060	0.97	0.4449	yes	N/A
P41125	RL13_CHICK	No assigned EC number	0.6161	0.98	0.4644	yes	N/A
P41123	RL13_RAT	No assigned EC number	0.6060	0.98	0.4644	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	100
pfam01294	179	pfam01294, Ribosomal_L13e, Ribosomal protein L13e	1e-21
PTZ00352	212	PTZ00352, PTZ00352, 60S ribosomal protein L13; Pro	4e-14
PTZ00192	218	PTZ00192, PTZ00192, 60S ribosomal protein L13; Pro	1e-07

>gnl|CDD|110307 pfam01294, Ribosomal_L13e, Ribosomal protein L13e

 Score = 83.3 bits (206), Expect = 1e-21
 Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 1/80 (1%)

Query: 1   MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           +E LQ N+QRLKEY+SKLI+FPR  KK  R G+++ EE K ATQLKGP+MPI Q   + +
Sbjct: 101 LEGLQANVQRLKEYQSKLILFPRNPKK-PRAGDSSAEEVKSATQLKGPVMPIAQEAKRVE 159

Query: 61  ARIPSEAEKKFSAFQTLRMA 80
           AR  ++ EK F AF TLR+A
Sbjct: 160 ARKVTKEEKSFKAFATLRLA 179

Length = 179

>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional

 Score = 64.4 bits (157), Expect = 4e-14
 Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 10/106 (9%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEA---------TPEERKVATQLKGPLMPI 52
           ESL LN++RLK Y SKL++FPR+  KK +KG A               V       ++P 
Sbjct: 105 ESLNLNVKRLKAYLSKLVLFPRK-GKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPF 163

Query: 53  RQSKPKSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           +++  + KAR+ ++ E+ F+A++TLR A+ +AK VG +EKK +   
Sbjct: 164 QRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKE 209

Length = 212

>gnl|CDD|173472 PTZ00192, PTZ00192, 60S ribosomal protein L13; Provisional

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQ----LKGPLMPIRQSKP 57
           E + +N+QRLK Y SKL++FP    KK++KGEA  EE K ATQ         +    +  
Sbjct: 112 EGMNVNVQRLKTYMSKLVLFP-MNHKKVQKGEAKEEEVKAATQDRSRFGDAAVGGVVTPS 170

Query: 58  KSKARIPSEAEKKFSAFQTLRMARADAKLVGIREKKA 94
           +   R+ S+ E+  + +  L+   +  +  G+R ++A
Sbjct: 171 REAPRVVSKEERSKNVYAFLKKNHSAVRFFGVRSRRA 207

Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
KOG3295|consensus	205		100.0
PTZ00352	212	60S ribosomal protein L13; Provisional	100.0
PTZ00192	218	60S ribosomal protein L13; Provisional	100.0
PF01294	179	Ribosomal_L13e: Ribosomal protein L13e; InterPro:	99.96

>KOG3295|consensus

Probab=100.00  E-value=5e-39  Score=241.10  Aligned_cols=99  Identities=57%  Similarity=0.881  Sum_probs=96.7

Q ss_pred             ChhHHHHHHHHHHHhhcceeeeCCcccccccCCCCHHHHhhhhhhcCCcccCCCCCCCCccccCCcchhhchHHHHHHHH
Q psy2844           1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMA   80 (100)
Q Consensus         1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkgds~~ee~~~a~q~~~~v~Pi~~~~~~~~~r~It~eek~~~Ay~~LR~a   80 (100)
                      +|+||+||||||+|+||||||||++++| ++||||++|+..++|++|.+|||.+....++++.||+++++|+||++||++
T Consensus       104 ~E~lqaNvqRlKey~sklilfprk~~ap-kkGdSsaeel~~atq~~g~~mPi~~~~~~eEa~~~t~e~k~f~Af~~lr~a  182 (205)
T KOG3295|consen  104 QEGLQANVQRLKEYKSKLILFPRKASAP-KKGDSSAEELKLATQLTGPVMPIVNVYAKEEARVVTDEEKNFKAFRTLRLA  182 (205)
T ss_pred             HHHHHHhHHHHHHhhcceEEeecCcCCC-cCCCCcHHHHHhhhhhcCCCcCccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhHHHHHHHhcC
Q psy2844          81 RADAKLVGIREKKAREAAGQ  100 (100)
Q Consensus        81 R~~~r~~G~R~kra~~~ae~  100 (100)
                      |+|+||.|+|+||++|++|+
T Consensus       183 Ra~ar~~g~raKRa~Eaae~  202 (205)
T KOG3295|consen  183 RANARLAGIRAKRAKEAAEE  202 (205)
T ss_pred             HHHhHhhhHHHHHHHHHHHh
Confidence            99999999999999999874

>PTZ00352 60S ribosomal protein L13; Provisional

Probab=100.00  E-value=1.3e-36  Score=230.48  Aligned_cols=98  Identities=40%  Similarity=0.681  Sum_probs=94.6

Q ss_pred             ChhHHHHHHHHHHHhhcceeeeCCcccccccC------CCCHHHHhh--hh-hhcCCcccCCCCCCCCccccCCcchhhc
Q psy2844           1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKG------EATPEERKV--AT-QLKGPLMPIRQSKPKSKARIPSEAEKKF   71 (100)
Q Consensus         1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkg------ds~~ee~~~--a~-q~~~~v~Pi~~~~~~~~~r~It~eek~~   71 (100)
                      +||||.||||||+|+|+||||||+.++| |+|      |+|+||++.  ++ |+.|.+|||.+..+.++++.||++|++|
T Consensus       104 ~Esl~~Nv~rLk~y~skLvlFPrk~~k~-kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~  182 (212)
T PTZ00352        104 QESLNLNVKRLKAYLSKLVLFPRKGKKP-KKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAF  182 (212)
T ss_pred             HHHHHHHHHHHHHHHHheeeecCCCCcc-ccCCCCCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHh
Confidence            5999999999999999999999999999 999      999999998  77 8999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHHhc
Q psy2844          72 SAFQTLRMARADAKLVGIREKKAREAAG   99 (100)
Q Consensus        72 ~Ay~~LR~aR~~~r~~G~R~kra~~~ae   99 (100)
                      +||++||+||+++|++|+|+|+++++++
T Consensus       183 ~Ay~tLR~aR~~ar~~G~r~kra~~k~~  210 (212)
T PTZ00352        183 NAYRTLRQAKLNAKFVGKKEKKKQAKEK  210 (212)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHhhc
Confidence            9999999999999999999999999875

>PTZ00192 60S ribosomal protein L13; Provisional

Probab=100.00  E-value=1.2e-35  Score=225.82  Aligned_cols=92  Identities=36%  Similarity=0.599  Sum_probs=87.6

Q ss_pred             ChhHHHHHHHHHHHhhcceeeeCCcccccccCCCCHHHHhhhhh---------hcCCcccCCCCCCCCccccCCcchhhc
Q psy2844           1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQ---------LKGPLMPIRQSKPKSKARIPSEAEKKF   71 (100)
Q Consensus         1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkgds~~ee~~~a~q---------~~~~v~Pi~~~~~~~~~r~It~eek~~   71 (100)
                      +||||.||||||+|+|||||||+++++| ++||+++||++.++|         +.|.+|||     .++++.||++|++|
T Consensus       111 ~Esl~~Nv~rLk~Y~skLilFPrk~~k~-kkgds~~ee~k~a~Q~~~~~~~~~~~g~v~Pi-----~~~~~~it~eek~~  184 (218)
T PTZ00192        111 EEGMNVNVQRLKTYMSKLVLFPMNHKKV-QKGEAKEEEVKAATQDRSRFGDAAVGGVVTPS-----REAPRVVSKEERSK  184 (218)
T ss_pred             HHHHHHHHHHHHHHHHheeeeccccCCC-CCCCCCHHHHHHHHhhhcccccccccCccccc-----ccccccCCHHHHHh
Confidence            5999999999999999999999999999 999999999999999         56899999     47899999999999


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHHh
Q psy2844          72 SAFQTLRMARADAKLVGIREKKAREAA   98 (100)
Q Consensus        72 ~Ay~~LR~aR~~~r~~G~R~kra~~~a   98 (100)
                      +||++||+||+++|++|+|+|||++++
T Consensus       185 ~Ay~~LR~aR~~~r~~G~r~krak~~~  211 (218)
T PTZ00192        185 NVYAFLKKNHSAVRFFGVRSRRAARKE  211 (218)
T ss_pred             hHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence            999999999999999999999998875

>PF01294 Ribosomal_L13e: Ribosomal protein L13e; InterPro: IPR001380 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.96  E-value=5.8e-31  Score=195.83  Aligned_cols=79  Identities=70%  Similarity=0.988  Sum_probs=50.5

Q ss_pred             ChhHHHHHHHHHHHhhcceeeeCCcccccccCCCCHHHHhhhhhhcCCcccCCCCCCCCccccCCcchhhchHHHHHHHH
Q psy2844           1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMA   80 (100)
Q Consensus         1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkgds~~ee~~~a~q~~~~v~Pi~~~~~~~~~r~It~eek~~~Ay~~LR~a   80 (100)
                      +||||+||||||+|+|||||||++.++| |+||+++||++.|+|++|.+|||.+..+.++++.||+||++|+||++||+|
T Consensus       101 ~Esl~~Nv~RLkeY~sklilfPrk~~~~-kkGdss~ee~k~a~q~~~~v~Pi~~~~~~~~~r~it~eek~~~af~~LR~a  179 (179)
T PF01294_consen  101 EESLQANVQRLKEYKSKLILFPRKAKKP-KKGDSSAEELKLATQLKGPVMPIRKVKKKEKARAITEEEKKFSAFRTLRMA  179 (179)
T ss_dssp             HHHHHHHHHHHHHHHHT-----SSS----TTT--TTHHHH-----HHHHS-----------HHHHHHHTTS-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhceeecCccccc-cccCCCHHHHHHHHhhcCceeeecCCcCccccccCCHHHhhhhHHHHHhcC
Confidence            4899999999999999999999999999 999999999999999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal protein L13e is widely found in vertebrates [], Drosophila melanogaster, plants, yeast, amongst others.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_U 4A1B_U 4A1D_U 4A19_U.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
3u5e_L	199	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-07
3zf7_N	218	High-resolution Cryo-electron Microscopy Structure		3e-06

>pdb|3U5E|L Chain L, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 199

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           E    N+QRLKEY+SK+IVFPR  K         PE  +V +       PI Q     +A
Sbjct: 107 EIFDANVQRLKEYQSKIIVFPRNGK--------APEAEQVLS--AAATFPIAQPATDVEA 156
Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKK 93
           R   +  +  SAF+TLR+AR++ K  GIREK+
Sbjct: 157 RAVQDNGE--SAFRTLRLARSEKKFRGIREKR 186

>pdb|3ZF7|N Chain N, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 218

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQ 44
           E + +N+QRLK Y SKL++FP   +KK +KG+AT EE K ATQ
Sbjct: 112 EGMNINVQRLKTYMSKLVLFP-LNRKKPQKGDATEEEVKAATQ 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
4a18_U	206	RPL13, 60S ribosomal protein L36; ribosome, eukary	3e-21
3u5e_L	199	60S ribosomal protein L13-A, 60S ribosomal protein	6e-14

>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U Length = 206

 Score = 82.5 bits (203), Expect = 3e-21
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKK-KLRKGEATPEERKVATQLKGPLMPIRQSKPKSK 60
           ESL+LN +RL  Y SKL++FPR + K K      T +    A       +P+     + K
Sbjct: 105 ESLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSVSKREK 164

Query: 61  ARIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           A       +K   ++ +R  + + K  G R+ KA+ AA
Sbjct: 165 AVSNIAELRKKKVYRIIRQEKTNQKWDGKRKAKAQAAA 202

>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L Length = 199

 Score = 63.2 bits (153), Expect = 6e-14
 Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 2   ESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKA 61
           E    N+QRLKEY+SK+IVFPR  K                        PI Q     +A
Sbjct: 107 EIFDANVQRLKEYQSKIIVFPRNGKAP----------EAEQVLSAAATFPIAQPATDVEA 156

Query: 62  RIPSEAEKKFSAFQTLRMARADAKLVGIREKKAREAA 98
           R   +     SAF+TLR+AR++ K  GIREK+ARE A
Sbjct: 157 RAVQD--NGESAFRTLRLARSEKKFRGIREKRAREKA 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
4a18_U	206	RPL13, 60S ribosomal protein L36; ribosome, eukary	100.0
3u5e_L	199	60S ribosomal protein L13-A, 60S ribosomal protein	100.0

>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U

Probab=100.00  E-value=3e-40  Score=248.55  Aligned_cols=99  Identities=31%  Similarity=0.450  Sum_probs=96.3

Q ss_pred             ChhHHHHHHHHHHHhhcceeeeCCcccccccC--CCCHHHHhhhhhhcCCcccCCCCCCCCccccCCcchhhchHHHHHH
Q psy2844           1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKG--EATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLR   78 (100)
Q Consensus         1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkg--ds~~ee~~~a~q~~~~v~Pi~~~~~~~~~r~It~eek~~~Ay~~LR   78 (100)
                      +||||.||||||+|+||||||||++++| |+|  |||+||++.|+|++|.+|||.++.+.++++.||+||++|+||++||
T Consensus       104 ~Esl~~Nv~rLk~y~sklIlFPrk~~k~-kkG~~Dss~ee~k~a~q~~g~vmPi~~~~~~~~~r~it~eek~~~ay~~LR  182 (206)
T 4a18_U          104 QESLELNKKRLLAYVSKLVLFPRHQGKA-KKGLVNDTADTSSAAQNALQTSVPLPSVSKREKAVSNIAELRKKKVYRIIR  182 (206)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCSSSCCC-TTTTCCCTTHHHHCCCCCHHHHSCCCCCCCCCCCHHHHHHHTTSCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHheEEeeCccccc-ccCCCCCCHHHHHHHHHhcccccCccCcccccccccCChhhhcccHHHHHH
Confidence            4999999999999999999999999999 999  9999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhHHHHHHHhcC
Q psy2844          79 MARADAKLVGIREKKAREAAGQ  100 (100)
Q Consensus        79 ~aR~~~r~~G~R~kra~~~ae~  100 (100)
                      +||+|+|++|+|+||++++||+
T Consensus       183 ~ar~~~r~~G~R~Kra~e~ae~  204 (206)
T 4a18_U          183 QEKTNQKWDGKRKAKAQAAAEP  204 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhhHHHHHHHHHHHHhhhc
Confidence            9999999999999999999885

>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L

Probab=100.00  E-value=3.4e-34  Score=214.64  Aligned_cols=88  Identities=44%  Similarity=0.619  Sum_probs=84.8

Q ss_pred             ChhHHHHHHHHHHHhhcceeeeCCcccccccCCCCHHHHhhhhhhcCCcccCCCCCCCCccccCCcchhhchHHHHHHHH
Q psy2844           1 MESLQLNIQRLKEYKSKLIVFPRREKKKLRKGEATPEERKVATQLKGPLMPIRQSKPKSKARIPSEAEKKFSAFQTLRMA   80 (100)
Q Consensus         1 ~EsL~~NVqRLK~YkskLIlFPrk~~kp~kkgds~~ee~~~a~q~~~~v~Pi~~~~~~~~~r~It~eek~~~Ay~~LR~a   80 (100)
                      +||||.||||||+|+|||||||+++++| ++|         ++|++|.+|||.++.+.++++.||+|  +|+||++||+|
T Consensus       106 ~Esl~~NVqrLk~y~sklilFPrk~~~~-kkG---------atq~~g~vmPi~~~~~~~~~r~it~e--~~~ay~~LR~a  173 (199)
T 3u5e_L          106 QEIFDANVQRLKEYQSKIIVFPRNGKAP-EAE---------QVLSAAATFPIAQPATDVEARAVQDN--GESAFRTLRLA  173 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTEEECCSSSCCC-CCC---------CCCCSTTTSCCCCCCCSCSEECCCCC--CCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhheeEeccccccc-ccc---------cccccccccccccccccccccccChh--hhhHHHHHHHH
Confidence            4899999999999999999999999999 999         68999999999999999999999999  99999999999


Q ss_pred             HhhhhhhhhhHHHHHHHhcC
Q psy2844          81 RADAKLVGIREKKAREAAGQ  100 (100)
Q Consensus        81 R~~~r~~G~R~kra~~~ae~  100 (100)
                      |+|+|++|+|+||++++||+
T Consensus       174 r~~~r~~G~R~Kra~e~ae~  193 (199)
T 3u5e_L          174 RSEKKFRGIREKRAREKAEA  193 (199)
T ss_dssp             HHHHHTHHHHHHHHHHHHCC
T ss_pred             HHHhHHHHHHHHHHHHHHHh
Confidence            99999999999999999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00