Psyllid ID: psy286

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MLGKNRYWSTVPRSLPWSHRTVTAKVLSSRKRREKDDRIGESQPVRERTLKVGVGVISARPVHHRYWSTELTMDHGAYTMLWSHRTVTAKVLSRKRREKDDRIGDFFSREKGQRVGKPQVKDCPNSEDILHLRYRWCSLEEEAQKKDICKSSKRGAPKSAGPVAVCHSALWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSSSGRNKF
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEHHHHcccHHccccccccccccccEEEEEEEEEEEEccccccccccEEEEEccccEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccEEEEEcccccEEEEEccccEEEEccccccccccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccccccccccccEEEHHHHHcHHHHHHccccccccccEEEEEEEcEEEEEcccccccccccEcccccccHEEEEccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHccccccccccccccHHHHcEEEEEccccccccccccccEEEEcccccccccEEEEEccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
mlgknrywstvprslpwshrtVTAKVLSSrkrrekddrigesqpvreRTLKVGVgvisarpvhhrywsteltmdhgaYTMLWSHRTVTAKVLSRkrrekddrigdffsrekgqrvgkpqvkdcpnsediLHLRYRWCSLEEEAQKKDicksskrgapksagpvavchsalwvirpcslpqlssssgnkyyenpryffgrnrwviynpdvglnydgsmvpaewygwlhyktdytpcedpgrpvyKWMAEHTqnmsgsnkeyvpysttrdkiqawtppsssgrnkf
Flexible Loop (DISEMBL)
mlgknrywstvprslpwshrtvtakvlssrkrrekddrigesqpvrertlkvgvgvisarpvhhrywSTELTMDHGAYTMLWSHRTVtakvlsrkrrekddrigdffsrekgqrvgkpqvkdcpnsedILHLRYRWCSLEEEAQKKDIcksskrgapksagpvAVCHSALWVIRPCSlpqlssssgnkyYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTrdkiqawtppsssgrnkf
Low Complexity Region (SEG)
MLGKNRYWSTVPRSLPWSHRTVTAKVLSSRKRREKDDRIGESQPVRERTLKVGVGVISARPVHHRYWSTELTMDHGAYTMLWSHRTVTAKVLSRKRREKDDRIGDFFSREKGQRVGKPQVKDCPNSEDILHLRYRWCSLEEEAQKKDICKSSKRGAPKSAGPVAVCHSALWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSSSGRNKF
Disordered region (IsUnstruct)
*******W********W*******************************TLKVGVGVISARPVHHRYWSTELTMDHGAYTMLWSHRTVTAKVL**********************************EDILHLRYRWCSLE*********************PVAVCHSALWVIRPCSLPQLS**SGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMA*************************************
Disordered Region (DISOPRED)
*****RYWSTVPRSLPWSHRTVT***********************ERTLKVGVGVISARPVHHRYWSTELTMDHGAYTMLWSHRTVTA*********************************CPNSEDILHLRYRWCSLEEEAQKKDICK***RGAPKSAGPVAVCHSALWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTP*EDPGR**YKWMAEHTQNMSGSNKEYVPYSTTRDKIQ*************
Disordered Region (DISEMBL)
MLGKNRYWSTVPRSLPWSHRTVTA*****************SQPVRERTLKVGVGVISARPVHHRYWSTELTMDHGAYTMLWSHRTVTAKVLSRKRREKDDRIGDFFSRE************CPNSEDILHLRYRWCSLEEEAQK******************AVCHSALWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQ*************
Disordered Region (DISPRO)
*****RYWSTVPRSLPWSHRTVTAKVLSSR*******RIGESQPVRERTLKVGVGVISARPVHHRYWSTELTMDHGAYTMLWSHRTVTAKVLSRKRR*****IGDFFS*******GKPQVKDCPNSEDILHLRYRWCSLEEEAQKKDICKSSKRG******PVAVCHSALWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGKNRYWSTVPRSLPWSHRTVTAKVLSSRKRREKDDRIGESQPVRERTLKVGVGVISARPVHHRYWSTELTMDHGAYTMLWSHRTVTAKVLSRKRREKDDRIGDFFSREKGQRVGKPQVKDCPNSEDILHLRYRWCSLEEEAQKKDICKSSKRGAPKSAGPVAVCHSALWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSSSGRNKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q9N2W7	146	Probable NADH dehydrogena	yes	N/A	0.327	0.636	0.515	4e-19
O97725	145	NADH dehydrogenase [ubiqu	yes	N/A	0.327	0.641	0.5	1e-18
Q0MQ86	145	NADH dehydrogenase [ubiqu	N/A	N/A	0.327	0.641	0.489	1e-18
Q0MQ87	145	NADH dehydrogenase [ubiqu	yes	N/A	0.327	0.641	0.479	4e-18
Q9UI09	145	NADH dehydrogenase [ubiqu	yes	N/A	0.327	0.641	0.479	4e-18
Q0MQ85	145	NADH dehydrogenase [ubiqu	N/A	N/A	0.327	0.641	0.479	5e-18
Q7TMF3	145	NADH dehydrogenase [ubiqu	yes	N/A	0.327	0.641	0.479	1e-17
Q9M9M9	159	Probable NADH dehydrogena	yes	N/A	0.320	0.572	0.349	6e-08
Q54MV7	138	NADH dehydrogenase [ubiqu	yes	N/A	0.257	0.528	0.397	6e-06

>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 2/95 (2%)

Query: 182 SSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRP 241
           S + GN+YYEN  YF  RNRWV +   V L+YD + VP EW+ WLH+ TD  P   P  P
Sbjct: 46  SDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPSVKP-PP 104

Query: 242 VYKWMAEHTQNMSG-SNKEYVPYSTTRDKIQAWTP 275
              W+ EH +N S  ++K+YVPYSTTR KIQ W P
Sbjct: 105 TQDWVLEHKENTSIYADKKYVPYSTTRTKIQGWQP 139

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Caenorhabditis elegans (taxid: 6239)

>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
           GNKYYE+ + FFGR+RWVIY  ++       + DGSMVP EW+ WLH  TD  P   P  
Sbjct: 45  GNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPT 104

Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                   H  N+SG+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNLSGTPQQYVPYSTTRKKIQEWVPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
           GNKYYE+ + FFGR+RWV+Y  ++       + DGSMVP EW+ WLH  TD  P   P  
Sbjct: 45  GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLT 104

Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                   H  NM+G+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNMTGTPEQYVPYSTTRKKIQEWIPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
           GNKYYE+ + FFGR+RWV+Y  ++       + DGSMVP EW+ WLH  TD  P   P  
Sbjct: 45  GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLT 104

Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                   H  N++G+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
           GNKYYE+ + FFGR+RWV+Y  ++       + DGSMVP EW+ WLH  TD  P   P  
Sbjct: 45  GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLT 104

Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                   H  N++G+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
           GNKYYE+ + FFGR+RWV+Y  ++       + DGSMVP EW+ WLH  TD  P   P  
Sbjct: 45  GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLT 104

Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                   H  N++G+ ++YVPYSTTR KIQ W PPS+
Sbjct: 105 ARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Mus musculus GN=Ndufa12 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
           GNKYYE+ + FFGR+RWVIY  ++       + DGSMVP EW+ WLH  TD  P  +P  
Sbjct: 45  GNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPT 104

Query: 241 PVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                   H  N+S + ++YVPYSTTR KI  W PPS+
Sbjct: 105 ARKFIWTNHKFNVSATPEQYVPYSTTRKKIHEWVPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 12/103 (11%)

Query: 186 GNKYYEN-PRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYK 244
           GNKYY+      +GR+RWV Y       Y+ S VPAEW+GWLH+ TD+T  E       +
Sbjct: 58  GNKYYQKLGDTQYGRHRWVEYASKD--RYNASQVPAEWHGWLHFITDHTGDELLSLKPKR 115

Query: 245 WMAEHTQNMSGSNKEYVPYSTTR---------DKIQAWTPPSS 278
           +  EH +N SG    Y+ +S             + Q+W P  +
Sbjct: 116 YGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCED-PGRPVYK 244
           GN+YYEN +  +GR+RWV Y  D   N D + +P E++ W+H+ +D  P E  P  P YK
Sbjct: 41  GNRYYENRQEIYGRHRWVEYG-DYKSN-DPTTIPPEYHSWIHHVSDKLPSEMLPFSPTYK 98

Query: 245 WMAEHTQNMSGSNKEYVP 262
               H  N +G++  Y P
Sbjct: 99  --RPHIANPTGTDGAYTP 114

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
357624894	128	hypothetical protein KGM_14839 [Danaus p	0.330	0.734	0.702	2e-32
322784947	140	hypothetical protein SINV_07082 [Solenop	0.323	0.657	0.684	8e-32
307178139	106	Probable NADH dehydrogenase [ubiquinone]	0.323	0.867	0.684	1e-31
288856293	139	NADH dehydrogenase (ubiquinone) 1 alpha	0.316	0.647	0.711	2e-31
332017162	142	Putative NADH dehydrogenase [ubiquinone]	0.320	0.640	0.692	3e-31
383861823	139	PREDICTED: probable NADH dehydrogenase [	0.323	0.661	0.641	2e-30
242007248	141	NADH-ubiquinone oxidoreductase subunit B	0.426	0.858	0.536	2e-29
240849013	141	NADH dehydrogenase [ubiquinone] 1 alpha	0.447	0.900	0.496	4e-29
24581165	142	CG3214, isoform A [Drosophila melanogast	0.316	0.633	0.611	5e-29
225709110	144	Probable NADH dehydrogenase 1 alpha subc	0.422	0.833	0.536	5e-29

>gi|357624894|gb|EHJ75497.1| hypothetical protein KGM_14839 [Danaus plexippus]

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 74/94 (78%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
           GNKYYENPRYF+ RNRWV YN    LNYDGS V AEWYGWLHYKTD  P +DP RP YKW
Sbjct: 33  GNKYYENPRYFYSRNRWVEYNDKAYLNYDGSQVSAEWYGWLHYKTDLPPHKDPSRPKYKW 92

Query: 246 MAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSSS 279
           MAE T+NMSG+  +YVPYSTTR+K++AW P   S
Sbjct: 93  MAEFTENMSGTTGQYVPYSTTREKVEAWVPKQKS 126

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784947|gb|EFZ11718.1| hypothetical protein SINV_07082 [Solenopsis invicta]

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
           GN+YYEN  +F GRNRW+IY   VGLNYDGS VPAEWYGWLHYKTD  P +DP RP YKW
Sbjct: 49  GNRYYENNAHFVGRNRWIIYADKVGLNYDGSQVPAEWYGWLHYKTDLPPHKDPSRPKYKW 108

Query: 246 MAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPS 277
           M +H QNMSG+++ Y+PYSTTR KI+ W PP 
Sbjct: 109 MQDHQQNMSGTDQAYMPYSTTRPKIEPWRPPQ 140

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178139|gb|EFN66947.1| Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Camponotus floridanus]

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
           GN+YYEN  YF GRNRWVIY   VG NYDGS VPAEW+GWLHYKTD TP +DP RP YKW
Sbjct: 15  GNRYYENNMYFVGRNRWVIYADKVGFNYDGSQVPAEWFGWLHYKTDLTPDKDPARPKYKW 74

Query: 246 MAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPS 277
           M +H QN+SG+N+ Y+PYSTT+ KI+ W PP 
Sbjct: 75  MLDHQQNLSGTNEAYMPYSTTKPKIEPWQPPQ 106

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|288856293|ref|NP_001165800.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Nasonia vitripennis]

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 72/90 (80%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
           GNKYYEN  YF GRNRWV+YNP V LNYD S VPAEW+GWLHYKTD  P  DP RP YKW
Sbjct: 48  GNKYYENNMYFVGRNRWVVYNPKVHLNYDASQVPAEWFGWLHYKTDLLPHRDPHRPKYKW 107

Query: 246 MAEHTQNMSGSNKEYVPYSTTRDKIQAWTP 275
           M EHT N+SG++K Y+PYSTT+ KI+AW P
Sbjct: 108 MVEHTPNLSGTDKAYMPYSTTKPKIEAWQP 137

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017162|gb|EGI57961.1| Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Acromyrmex echinatior]

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 71/91 (78%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
           GN+YYEN  YF GRNRWVIY   VGLNYDGS VP EW+GWLHYKTD  P EDP RP YKW
Sbjct: 51  GNRYYENNMYFLGRNRWVIYADKVGLNYDGSQVPPEWFGWLHYKTDLPPHEDPSRPKYKW 110

Query: 246 MAEHTQNMSGSNKEYVPYSTTRDKIQAWTPP 276
           M +H  NMSG+++ Y+PYSTTR KI+ W PP
Sbjct: 111 MMDHQPNMSGTDQAYMPYSTTRSKIEPWRPP 141

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383861823|ref|XP_003706384.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like [Megachile rotundata]

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 74/92 (80%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
           GNKYYEN  YF+G NRWV+Y+  VG+ YDGS VPAEW+GWLHYKTD  P +DPGRP +KW
Sbjct: 48  GNKYYENNSYFYGSNRWVVYSERVGMEYDGSQVPAEWFGWLHYKTDLLPHQDPGRPKHKW 107

Query: 246 MAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPS 277
           MA+H +NM+G+ + Y+PYSTT+ KI+ W PP 
Sbjct: 108 MADHKENMTGTYEAYMPYSTTKPKIEPWKPPQ 139

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|242007248|ref|XP_002424454.1| NADH-ubiquinone oxidoreductase subunit B17.2, putative [Pediculus humanus corporis] gi|212507854|gb|EEB11716.1| NADH-ubiquinone oxidoreductase subunit B17.2, putative [Pediculus humanus corporis]

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 82/123 (66%), Gaps = 2/123 (1%)

Query: 158 KSAGPVAVCHSALWVIRPCSLPQLSSSS--GNKYYENPRYFFGRNRWVIYNPDVGLNYDG 215
           K+ G        L  I    L +L  S   GNKYYEN  YF+GRNRWVIY+   G +YD 
Sbjct: 17  KAHGGFLQSFIKLNRIDDLKLGKLVGSDRFGNKYYENDSYFYGRNRWVIYSDRFGYDYDA 76

Query: 216 SMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTP 275
           S V  +WYGWLHYKTD  P EDP RP +KW+A+ + NM+G++K+YVPYSTT+ KIQ+W P
Sbjct: 77  SHVDPQWYGWLHYKTDILPYEDPSRPKHKWLAKESYNMTGTDKQYVPYSTTKPKIQSWVP 136

Query: 276 PSS 278
           P S
Sbjct: 137 PKS 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849013|ref|NP_001155728.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Acyrthosiphon pisum] gi|239789236|dbj|BAH71255.1| ACYPI007810 [Acyrthosiphon pisum]

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 6/133 (4%)

Query: 147 DICKSSKRGAPKSAGPVAVCHSALWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYN 206
           +I K++  G P +A      H  L +       ++    GN+YYEN  YF+GRNRWV YN
Sbjct: 15  NIIKAN--GGPLNAFKKLFRHDELKIGTLVGTDEM----GNRYYENNTYFYGRNRWVEYN 68

Query: 207 PDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTT 266
             V L+YD S + AEWYGW+HYKTD  P  DP RP YKWMA+HT+N +G+ ++YVPYST 
Sbjct: 69  DQVYLDYDASQITAEWYGWIHYKTDLLPYNDPNRPKYKWMAKHTENETGTERQYVPYSTM 128

Query: 267 RDKIQAWTPPSSS 279
             KIQAW PP+ +
Sbjct: 129 PPKIQAWVPPNKN 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|24581165|ref|NP_608692.1| CG3214, isoform A [Drosophila melanogaster] gi|221330629|ref|NP_001137770.1| CG3214, isoform B [Drosophila melanogaster] gi|442625489|ref|NP_001259944.1| CG3214, isoform C [Drosophila melanogaster] gi|7295939|gb|AAF51238.1| CG3214, isoform A [Drosophila melanogaster] gi|220901911|gb|ACL82977.1| CG3214, isoform B [Drosophila melanogaster] gi|440213210|gb|AGB92481.1| CG3214, isoform C [Drosophila melanogaster]

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 73/90 (81%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
           GNKY+ENP YF+GRNRW+ + P V ++YDGSM+PAEWYGW+HYKTD  P  D  RP YKW
Sbjct: 48  GNKYFENPYYFYGRNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDGCRPKYKW 107

Query: 246 MAEHTQNMSGSNKEYVPYSTTRDKIQAWTP 275
           +A+H++N+SG+ + Y PYSTT +K++AW P
Sbjct: 108 IADHSENLSGTKEAYYPYSTTPNKVEAWEP 137

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225709110|gb|ACO10401.1| Probable NADH dehydrogenase 1 alpha subcomplex subunit 12 [Caligus rogercresseyi]

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 83/125 (66%), Gaps = 5/125 (4%)

Query: 158 KSAGPVAVCHSALWVIRPCSLPQLSSS--SGNKYYENPRYFFGRNRWVIYNPDVGLNYDG 215
           KS G +      L++     + +L     +GNKYY+N +YF+G NRWV YNP V L YDG
Sbjct: 21  KSNGGIKSSMKKLYLYDSLKVGELVGEDRNGNKYYQNNKYFYGSNRWVEYNPKVHLEYDG 80

Query: 216 SMVPAEWYGWLHYKTDYTPCEDPGRPV-YKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWT 274
           SM+PAEW+GW+HYKTD  P   P  PV Y+WM EH  N SG+NK Y PYSTT+ KIQ+W 
Sbjct: 81  SMIPAEWFGWMHYKTDDPPTVKP--PVKYEWMKEHEMNNSGTNKAYTPYSTTKPKIQSWV 138

Query: 275 PPSSS 279
           PP SS
Sbjct: 139 PPKSS 143

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
FB|FBgn0031436	142	CG3214 [Drosophila melanogaste	0.316	0.633	0.611	5.2e-33
WB|WBGene00022380	146	Y94H6A.8.2 [Caenorhabditis ele	0.327	0.636	0.515	1e-22
ZFIN|ZDB-GENE-050828-1	146	ndufa12 "NADH dehydrogenase (u	0.327	0.636	0.54	1e-22
UNIPROTKB|O97725	145	NDUFA12 "NADH dehydrogenase [u	0.323	0.634	0.525	1.6e-22
UNIPROTKB|F1NW95	149	NDUFA12 "Uncharacterized prote	0.330	0.630	0.524	2.1e-22
UNIPROTKB|F1SQP4	147	NDUFA12 "Uncharacterized prote	0.323	0.625	0.515	2.1e-22
UNIPROTKB|F1PWZ9	145	NDUFA12 "Uncharacterized prote	0.316	0.620	0.524	4.3e-22
UNIPROTKB|Q9UI09	145	NDUFA12 "NADH dehydrogenase [u	0.323	0.634	0.505	1.1e-21
RGD|1311462	148	Ndufa12 "NADH dehydrogenase (u	0.323	0.621	0.515	1.5e-21
MGI|MGI:1913664	145	Ndufa12 "NADH dehydrogenase (u	0.323	0.634	0.505	2.4e-21

FB|FBgn0031436 CG3214 [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 55/90 (61%), Positives = 73/90 (81%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
             GNKY+ENP YF+GRNRW+ + P V ++YDGSM+PAEWYGW+HYKTD  P  D  RP YKW
Sbjct:    48 GNKYFENPYYFYGRNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDGCRPKYKW 107

Query:   246 MAEHTQNMSGSNKEYVPYSTTRDKIQAWTP 275
             +A+H++N+SG+ + Y PYSTT +K++AW P
Sbjct:   108 IADHSENLSGTKEAYYPYSTTPNKVEAWEP 137

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

WB|WBGene00022380 Y94H6A.8.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 49/95 (51%), Positives = 61/95 (64%)

Query:   182 SSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRP 241
             S + GN+YYEN  YF  RNRWV +   V L+YD + VP EW+ WLH+ TD  P   P  P
Sbjct:    46 SDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPSVKPP-P 104

Query:   242 VYKWMAEHTQNMS-GSNKEYVPYSTTRDKIQAWTP 275
                W+ EH +N S  ++K+YVPYSTTR KIQ W P
Sbjct:   105 TQDWVLEHKENTSIYADKKYVPYSTTRTKIQGWQP 139

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-050828-1 ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 54/100 (54%), Positives = 66/100 (66%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
             GNKYYE+ R+FFGR+RWVIY  ++ G N     DGSMVPAEW+ WLH  TD  P   P  
Sbjct:    46 GNKYYEDNRFFFGRHRWVIYTTEMNGKNTFWDVDGSMVPAEWHRWLHCMTDDPPTTHPPE 105

Query:   241 PVYKWMAE-HTQNMSGSNKEYVPYSTTRDKIQAWTPPSSS 279
             P  K++A+ H  N+SG+   YVP+STTR KI  W PP  S
Sbjct:   106 PK-KFLAKVHQINLSGTPDCYVPFSTTRKKIHEWVPPKVS 144

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|O97725 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 52/99 (52%), Positives = 65/99 (65%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPC-EDPG 239
             GNKYYE+ + FFGR+RWVIY  ++ G N     DGSMVP EW+ WLH  TD  P  + P 
Sbjct:    45 GNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPT 104

Query:   240 RPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                + W   H  N+SG+ ++YVPYSTTR KIQ W PPS+
Sbjct:   105 ARKFIW-TNHKFNLSGTPQQYVPYSTTRKKIQEWVPPST 142

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|F1NW95 NDUFA12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/103 (52%), Positives = 69/103 (66%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
             GNKYYE+ R FFGR+RWV+Y  ++ G N     DGSMVP EW+ WLH  TD  P   P  
Sbjct:    49 GNKYYEDKRNFFGRHRWVVYTSEMNGKNTFWEVDGSMVPPEWHRWLHSMTDDPPTTHP-- 106

Query:   241 PVY-KWMAE-HTQNMSGSNKEYVPYSTTRDKIQAWTPPSSSGR 281
             PV  K++ E H  N+SG+  +YVPYSTTR KIQ W PP+++ +
Sbjct:   107 PVARKFIWENHKFNLSGTPGQYVPYSTTRKKIQEWIPPTTASK 149

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

UNIPROTKB|F1SQP4 NDUFA12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 51/99 (51%), Positives = 64/99 (64%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPC-EDPG 239
             GNKYYE+ + FFGR+RWVIY  ++       + DGSMVP EW+ WLH  TD  P  + P 
Sbjct:    47 GNKYYEDNKQFFGRHRWVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMTDDPPTTKPPT 106

Query:   240 RPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                Y W   H  N+SG+ ++YVPYSTTR KIQ W PPS+
Sbjct:   107 ARKYIW-TNHKFNVSGTPQQYVPYSTTRKKIQEWVPPST 144

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|F1PWZ9 NDUFA12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 53/101 (52%), Positives = 66/101 (65%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
             GNKYYE+ + FFGR+RWVIY  ++ G N     DGSMVP EW+ WLH  TD  P   P  
Sbjct:    45 GNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKP-- 102

Query:   241 PVYK---WMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
             PV +   W   H  N+SG+ ++YVPYSTTR KIQ W PP++
Sbjct:   103 PVARKFIW-TNHKFNVSGTPEQYVPYSTTRKKIQEWVPPAT 142

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|Q9UI09 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/99 (50%), Positives = 64/99 (64%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPCEDP-G 239
             GNKYYE+ + FFGR+RWV+Y  ++ G N     DGSMVP EW+ WLH  TD  P   P  
Sbjct:    45 GNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLT 104

Query:   240 RPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                + W   H  N++G+ ++YVPYSTTR KIQ W PPS+
Sbjct:   105 ARKFIW-TNHKFNVTGTPEQYVPYSTTRKKIQEWIPPST 142

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0007585 "respiratory gaseous exchange" evidence=NAS

GO:0003954 "NADH dehydrogenase activity" evidence=NAS

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

RGD|1311462 Ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Rattus norvegicus (taxid:10116)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 51/99 (51%), Positives = 63/99 (63%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPCEDP-G 239
             GNKYYE+ + FFGR+RWVIY  ++ G N     DGSMVP EW+ WLH  TD  P   P  
Sbjct:    48 GNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTKPLT 107

Query:   240 RPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                + W   H  N+S + ++YVPYSTTR KIQ W PPS+
Sbjct:   108 ARKFIW-TNHKFNVSATPEQYVPYSTTRKKIQEWVPPST 145

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

MGI|MGI:1913664 Ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Mus musculus (taxid:10090)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 50/99 (50%), Positives = 63/99 (63%)

Query:   186 GNKYYENPRYFFGRNRWVIYNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPCEDPGR 240
             GNKYYE+ + FFGR+RWVIY  ++ G N     DGSMVP EW+ WLH  TD  P  +P  
Sbjct:    45 GNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPT 104

Query:   241 P-VYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS 278
                + W   H  N+S + ++YVPYSTTR KI  W PPS+
Sbjct:   105 ARKFIW-TNHKFNVSATPEQYVPYSTTRKKIHEWVPPST 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N2W7	NDUAC_CAEEL	No assigned EC number	0.5157	0.3274	0.6369	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	284
pfam05071	100	pfam05071, NDUFA12, NADH ubiquinone oxidoreductase	5e-31
PRK08183	133	PRK08183, PRK08183, NADH dehydrogenase; Validated	4e-15
PLN03095	115	PLN03095, PLN03095, NADH:ubiquinone oxidoreductase	7e-14
PLN02732	159	PLN02732, PLN02732, Probable NADH dehydrogenase [u	2e-13
COG3761	118	COG3761, COG3761, NADH:ubiquinone oxidoreductase 1	5e-10

>gnl|CDD|218414 pfam05071, NDUFA12, NADH ubiquinone oxidoreductase subunit NDUFA12

 Score =  111 bits (279), Expect = 5e-31
 Identities = 40/96 (41%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 186 GNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKW 245
           GNKYYEN     GR RWVIYN       + S VP EW+GWLH+ TD  P E+P      W
Sbjct: 10  GNKYYENKDELGGRRRWVIYNGKA----EASRVPPEWHGWLHHTTDEPPTEEP-LKPRAW 64

Query: 246 MAEHTQNMSGSNKEYVPYST------TRDKIQAWTP 275
              H  N++G+   Y PY +           +AWTP
Sbjct: 65  EKPHQPNLTGTPGAYRPYGSLLRRPRATGDYEAWTP 100

This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologues. The family also contains a second related eukaryotic protein of unknown function, . Length = 100

>gnl|CDD|236176 PRK08183, PRK08183, NADH dehydrogenase; Validated

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 17/102 (16%)

Query: 186 GNKYYEN--PRYFFGRN-RWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPV 242
           GN YY     +   GR  RWVIYN       + S +P EW+GWLH+  D  P ++P  P 
Sbjct: 35  GNVYYRTKGGKPSDGRERRWVIYNGYA----EASRIPPEWHGWLHHTVDVPPTKEPYPP- 89

Query: 243 YKWMAEHTQNMSGSNKEYVP-----YSTTRDKI----QAWTP 275
            +W   H  N++G+   Y P         R +      AWTP
Sbjct: 90  REWEKPHQPNLTGTPLAYRPKGSILRGGERPRATGDYDAWTP 131

Length = 133

>gnl|CDD|215571 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional

 Score = 66.4 bits (162), Expect = 7e-14
 Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 186 GNKYYENPRYFFGRNRWVIY-NPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYK 244
           GNKYYENP Y  GR+RWV Y + D   +Y+ S +P EW+GWLHY  D    E   R   +
Sbjct: 19  GNKYYENPSYQSGRHRWVEYADKD---DYNASNIPPEWHGWLHYVNDEPG-ELEDRTAPR 74

Query: 245 WMAEHTQNMS--GSNKEYVPYST-----TRD--KIQAWTPP 276
           +  E     +  G+   Y P         R+  +   W+PP
Sbjct: 75  YQLEFIAGGTTTGTQYMYHPKGHFLSKRPRNWKRYTPWSPP 115

Length = 115

>gnl|CDD|215389 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit

 Score = 66.1 bits (161), Expect = 2e-13
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 12/100 (12%)

Query: 186 GNKYYEN-PRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYK 244
           GNKYY+      +GR+RWV Y       Y+ S VPAEW+GWLH+ TD+T  E       +
Sbjct: 58  GNKYYQKLGDTQYGRHRWVEYAEKS--RYNASQVPAEWHGWLHFITDHTGDELLMLKPKR 115

Query: 245 WMAEHTQNMSGSNKEYVPYST-------TRD--KIQAWTP 275
           +  EH +N SG  +EY+ +S         +D  + Q+W P
Sbjct: 116 YGLEHKENFSGEGEEYIYHSKGHTLNPGQKDWTRYQSWQP 155

Length = 159

>gnl|CDD|226284 COG3761, COG3761, NADH:ubiquinone oxidoreductase 17

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 18/102 (17%)

Query: 186 GNKYYE--NPRYFFGRNRWVIYNPDVGLNY-DGSMVPAEWYGWLHYKTDYTPCEDPGRPV 242
           GN YYE  N        RWVIYN      Y + S +P  W+GWLH++ D  P  +   P 
Sbjct: 22  GNVYYEGRNIDSEGRTRRWVIYN-----GYAEASKIPPGWHGWLHHRVDEPPKSEQLFP- 75

Query: 243 YKWMAEHTQNMSGSNKEYVPYS---------TTRDKIQAWTP 275
            +W   H  N++G+   Y P                  AWTP
Sbjct: 76  REWQKPHLPNLTGTPHAYRPKGSLARAGERPRVTGDYDAWTP 117

2 kD subunit [Energy production and conversion]. Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
PRK08183	133	NADH dehydrogenase; Validated	100.0
PLN03095	115	NADH:ubiquinone oxidoreductase 18 kDa subunit; Pro	100.0
PLN02732	159	Probable NADH dehydrogenase [ubiquinone] 1 alpha s	100.0
KOG3382|consensus	151		100.0
PF05071	105	NDUFA12: NADH ubiquinone oxidoreductase subunit ND	100.0
COG3761	118	NADH:ubiquinone oxidoreductase 17.2 kD subunit [En	99.97
PRK06630	99	hypothetical protein; Provisional	99.94
PF15613	38	WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2	87.33

>PRK08183 NADH dehydrogenase; Validated

Probab=100.00  E-value=1.1e-39  Score=274.12  Aligned_cols=109  Identities=30%  Similarity=0.569  Sum_probs=98.2

Q ss_pred             cceeeeeeeeecCCCcceeccCCCCeeeEcCCC---CCCceeEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCC
Q psy286          163 VAVCHSALWVIRPCSLPQLSSSSGNKYYENPRY---FFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPG  239 (284)
Q Consensus       163 ~~~~~~~~~~~R~g~l~VGeDefGNKYYE~p~~---~~GRrRWVeYa~~~~~dyDaSqIPPEWH~WLHhtRDePPT~eEI  239 (284)
                      ++.++++++++|+++| ||+|++||||||+++.   ..+++|||+|++.    +|+|+||||||+||||++|+||++++ 
T Consensus        13 g~t~~t~~~~~r~g~l-VG~D~~GNkYYE~~~~~~~~~~~rRWV~Y~~~----~d~s~IPpeWh~WLh~~~d~pPt~~~-   86 (133)
T PRK08183         13 GQTLGTRFFTWRKGER-VGEDEFGNVYYRTKGGKPSDGRERRWVIYNGY----AEASRIPPEWHGWLHHTVDVPPTKEP-   86 (133)
T ss_pred             cCchhheeehhccCeE-eEecCCCCeeeecCCccccCCCceEEEEeCCC----CCccccCchHHhhhccCcCCCCCccc-
Confidence            4578999999999998 9999999999999873   3457999999996    89999999999999999999999988 


Q ss_pred             CCCCCccCCCcCCCCCCCCccccCCCC---------CCCccccCCCC
Q psy286          240 RPVYKWMAEHTQNMSGSNKEYVPYSTT---------RDKIQAWTPPS  277 (284)
Q Consensus       240 ~~~kkWqk~H~pNlTGT~~AY~Py~Tt---------k~KYeaW~P~~  277 (284)
                      +.+++|+++|+||||||++||+|+++.         +.+||||+|+.
T Consensus        87 ~~~~~w~~~H~~N~TGT~~aY~P~G~~~~~~~r~~~~~dY~aW~P~~  133 (133)
T PRK08183         87 YPPREWEKPHQPNLTGTPLAYRPKGSILRGGERPRATGDYDAWTPGN  133 (133)
T ss_pred             cCCCccccCCCCCCCCCccceeCCCccccCCcCCcccCCcccCCCCC
Confidence            578889999999999999999999862         35799999973

>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional

Probab=100.00  E-value=1.3e-38  Score=262.40  Aligned_cols=103  Identities=35%  Similarity=0.671  Sum_probs=93.3

Q ss_pred             eeeecCCCcceeccCCCCeeeEcCCCCCCceeEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCCCccCCC
Q psy286          170 LWVIRPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEH  249 (284)
Q Consensus       170 ~~~~R~g~l~VGeDefGNKYYE~p~~~~GRrRWVeYa~~~~~dyDaSqIPPEWH~WLHhtRDePPT~eEI~~~kkWqk~H  249 (284)
                      -|-.|+++| ||+|+|||+|||++.+..|++|||+|++.  .+||+|+||||||+||||++|+||++++ +..+.|+++|
T Consensus         4 ~~~~r~g~l-VG~D~~GNkYYE~~~~~~~rrRWV~Y~~~--~d~d~S~VPpeWH~WLh~~~d~pPt~~~-~~~~~w~~~H   79 (115)
T PLN03095          4 VLASRAGRL-VGEDEFGNKYYENPSYQSGRHRWVEYADK--DDYNASNIPPEWHGWLHYVNDEPGELED-RTAPRYQLEF   79 (115)
T ss_pred             eeeeecceE-eEEcCCCCeeeEcCCCCCCCeEEEEeCCC--ccCCccccCchHhHhhccCcCCCCCccc-cCCCccccCC
Confidence            466788998 99999999999999877789999999996  3689999999999999999999999877 7788999999


Q ss_pred             cCCCC--CCCCccccCCCC-------CCCccccCCC
Q psy286          250 TQNMS--GSNKEYVPYSTT-------RDKIQAWTPP  276 (284)
Q Consensus       250 ~pNlT--GT~~AY~Py~Tt-------k~KYeaW~P~  276 (284)
                      ++|||  ||+.||+|.++.       +.+|+||+|+
T Consensus        80 ~~NlT~tGT~~aY~P~Gs~~~~~~~~~~dY~aW~P~  115 (115)
T PLN03095         80 IAGGTTTGTQYMYHPKGHFLSKRPRNWKRYTPWSPP  115 (115)
T ss_pred             CCCcCCCCCccceeCCCccccCCCCcccCccCCCCC
Confidence            99999  899999999863       4679999995

>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit

Probab=100.00  E-value=6.2e-37  Score=264.05  Aligned_cols=112  Identities=33%  Similarity=0.550  Sum_probs=95.9

Q ss_pred             cceeeeeeeeecCCCcceeccCCCCeeeEcCC-CCCCceeEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCC
Q psy286          163 VAVCHSALWVIRPCSLPQLSSSSGNKYYENPR-YFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRP  241 (284)
Q Consensus       163 ~~~~~~~~~~~R~g~l~VGeDefGNKYYE~p~-~~~GRrRWVeYa~~~~~dyDaSqIPPEWH~WLHhtRDePPT~eEI~~  241 (284)
                      +..+++.++++ .++| ||+|+|||||||++. ...||+|||+|++.  .+||+|+||||||+||||++|+||++.+.+.
T Consensus        37 g~t~gt~~~~~-~G~l-VG~D~~GNkYYE~~~~~~~grrRWV~Y~~~--~~~daS~VPpeWH~WLH~~~D~pP~~~~~~~  112 (159)
T PLN02732         37 GNLLQTKIHNI-GATL-VGVDKFGNKYYQKLGDTQYGRHRWVEYAEK--SRYNASQVPAEWHGWLHFITDHTGDELLMLK  112 (159)
T ss_pred             cceeeeEEEee-CcEE-EEecCCCCeeeecCCCCCCCceeEEEeCCC--ccCCcCcCCchhhhhhccccCCCCccccccC
Confidence            55778888888 7887 999999999999985 56789999999986  3589999999999999999999999733367


Q ss_pred             CCCccCCCcCCCCCCC--CccccCCC-------CCCCccccCCCCC
Q psy286          242 VYKWMAEHTQNMSGSN--KEYVPYST-------TRDKIQAWTPPSS  278 (284)
Q Consensus       242 ~kkWqk~H~pNlTGT~--~AY~Py~T-------tk~KYeaW~P~~a  278 (284)
                      +++|+++|+||||||+  .||+|.++       .+.+|+||+|++.
T Consensus       113 ~~~w~~~H~pNlTGT~~~~ay~p~Gs~~~~g~~~~~dYeaW~P~~~  158 (159)
T PLN02732        113 PKRYGLEHKENFSGEGEEYIYHSKGHTLNPGQKDWTRYQSWQPTKT  158 (159)
T ss_pred             CCccccCCCCCcCCCCCCceECCCcccccCCCCcccCccCCCCCCC
Confidence            7889999999999998  67788765       2457999999875

>KOG3382|consensus

Probab=100.00  E-value=2e-37  Score=263.09  Aligned_cols=105  Identities=51%  Similarity=0.964  Sum_probs=99.3

Q ss_pred             cCCCcceeccCCCCeeeEcCCCCCCceeEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCCCccCCCcCCC
Q psy286          174 RPCSLPQLSSSSGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNM  253 (284)
Q Consensus       174 R~g~l~VGeDefGNKYYE~p~~~~GRrRWVeYa~~~~~dyDaSqIPPEWH~WLHhtRDePPT~eEI~~~kkWqk~H~pNl  253 (284)
                      +.|+| ||.|+|||||||++.++.||+|||||+...++|||+|+||||||+|||+++|+||+..-.+++++|..+|.+|+
T Consensus        45 kiGTL-VG~DkfGNkYyen~~~fygRhRWVeya~kv~~Dyd~S~VP~EWh~WlH~iTD~~p~~~~~~~~~k~i~eHkeN~  123 (151)
T KOG3382|consen   45 KIGTL-VGVDKFGNKYYENNDYFYGRHRWVEYASKVNWDYDASQVPAEWHGWLHFITDDPPDEKLPLPPKKWILEHKENF  123 (151)
T ss_pred             cceee-eeecccccchhcccceecccceeEEecccccccccccCCCHHHHhHhHhhccCCccccCCCCHHHHhHhccccc
Confidence            34788 99999999999999999999999999999999999999999999999999999999985589999999999999


Q ss_pred             CC-CCCccccCCCCCCCccccCCCCCC
Q psy286          254 SG-SNKEYVPYSTTRDKIQAWTPPSSS  279 (284)
Q Consensus       254 TG-T~~AY~Py~Ttk~KYeaW~P~~a~  279 (284)
                      || |..+|+||+|++.|||+|.|..+.
T Consensus       124 Sg~t~e~y~Pystt~tkiq~W~P~~t~  150 (151)
T KOG3382|consen  124 SGETGETYVPYSTTRTKIQSWVPTKTP  150 (151)
T ss_pred             cccCCceeccCcCChhHhheecCCCCC
Confidence            99 999999999999999999998753

>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=1e-34  Score=232.70  Aligned_cols=95  Identities=40%  Similarity=0.766  Sum_probs=86.1

Q ss_pred             CCcceeccCCCCeeeEcC-CCCCCceeEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCCCccCCCcCCCC
Q psy286          176 CSLPQLSSSSGNKYYENP-RYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMS  254 (284)
Q Consensus       176 g~l~VGeDefGNKYYE~p-~~~~GRrRWVeYa~~~~~dyDaSqIPPEWH~WLHhtRDePPT~eEI~~~kkWqk~H~pNlT  254 (284)
                      |+| ||+|+|||+|||++ ....+++|||+|++..  +|++++||||||+||||++++|||+++ +....|+++|++|+|
T Consensus         1 G~l-VG~D~~GN~YyE~~~~~~~~~rRwV~y~~~~--~~~~s~IPpeWh~WL~~~r~~pPt~~~-~~~~~~~~~~~~n~t   76 (105)
T PF05071_consen    1 GTL-VGTDEFGNKYYENPRDEQGRRRRWVEYAGKS--DYDPSQIPPEWHAWLHHTRDEPPTEEE-LARRQWQKPHKPNLT   76 (105)
T ss_pred             CCE-eeEeCCCCEEEeecCCCcCCCcEEEEcCCcc--ccCcCccCcchHHHhccCcCCCCCccc-cchHHHHHHhhhhhh
Confidence            566 99999999999999 5566789999999984  688999999999999999999999887 567799999999999


Q ss_pred             CCCCccccCCCCCC---------CccccCC
Q psy286          255 GSNKEYVPYSTTRD---------KIQAWTP  275 (284)
Q Consensus       255 GT~~AY~Py~Ttk~---------KYeaW~P  275 (284)
                      ||..+|.|+++ ++         ||+||+|
T Consensus        77 ~~~~ay~p~~~-~~~~~~~~~~~~y~~W~P  105 (105)
T PF05071_consen   77 GTEEAYRPKGT-KSKEREQRNWKKYEAWTP  105 (105)
T ss_pred             cChHhhcCCCc-ccccccccccCCccCCCC
Confidence            99999999998 54         5999998

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane

>COG3761 NADH:ubiquinone oxidoreductase 17

Probab=99.97  E-value=9.1e-32  Score=220.93  Aligned_cols=96  Identities=33%  Similarity=0.605  Sum_probs=85.8

Q ss_pred             CCCcceeccCCCCeeeEc-CCCCCCc-eeEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCCCccCCCcCC
Q psy286          175 PCSLPQLSSSSGNKYYEN-PRYFFGR-NRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQN  252 (284)
Q Consensus       175 ~g~l~VGeDefGNKYYE~-p~~~~GR-rRWVeYa~~~~~dyDaSqIPPEWH~WLHhtRDePPT~eEI~~~kkWqk~H~pN  252 (284)
                      +.+ +||+|+|||.|||. ..+..|| +|||||++.    .++|.|||+||+||||+.|+||+.+. +.++.||++|+||
T Consensus        12 fh~-kvGeDefgN~Yye~r~~ds~gr~RRwVIYngy----aEas~IPp~WhgWlHh~vd~~P~~~~-~~~reWqKph~pn   85 (118)
T COG3761          12 FHK-KVGEDEFGNVYYEGRNIDSEGRTRRWVIYNGY----AEASKIPPGWHGWLHHRVDEPPKSEQ-LFPREWQKPHLPN   85 (118)
T ss_pred             HHH-hccchhccceeeeccCCccCCCeeeEEEEcCc----chhccCCCchhhhhhhhccCCccccc-cchhhhccccccC
Confidence            344 49999999999998 4456677 999999998    78999999999999999999999988 8888999999999


Q ss_pred             CCCCCCccccCCCC---------CCCccccCCC
Q psy286          253 MSGSNKEYVPYSTT---------RDKIQAWTPP  276 (284)
Q Consensus       253 lTGT~~AY~Py~Tt---------k~KYeaW~P~  276 (284)
                      ||||..||+|.++.         ..+|++|+|.
T Consensus        86 ~tgt~~a~rPkgs~~~~gerp~~t~dYdaWtP~  118 (118)
T COG3761          86 LTGTPHAYRPKGSLARAGERPRVTGDYDAWTPG  118 (118)
T ss_pred             CCCCcceeccCccccccCcCccccccccccCCC
Confidence            99999999999873         2479999994

2 kD subunit [Energy production and conversion]

>PRK06630 hypothetical protein; Provisional

Probab=99.94  E-value=1.1e-27  Score=193.72  Aligned_cols=73  Identities=22%  Similarity=0.452  Sum_probs=64.5

Q ss_pred             eeeecCCCcceeccCCCCeeeEcCC--CCCCceeEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCCCccC
Q psy286          170 LWVIRPCSLPQLSSSSGNKYYENPR--YFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMA  247 (284)
Q Consensus       170 ~~~~R~g~l~VGeDefGNKYYE~p~--~~~GRrRWVeYa~~~~~dyDaSqIPPEWH~WLHhtRDePPT~eEI~~~kkWqk  247 (284)
                      |+++|+|+| ||+|+|||+|||+..  ++.+++|||+|++.    +|||+||||||+||||+.|+||+  + +.++.||+
T Consensus         7 ~~t~r~G~l-VG~D~~GNkYYE~~~~~~~gr~rRWViY~g~----~daS~VPpeWHgWLHh~~D~pPt--~-~~~k~WqK   78 (99)
T PRK06630          7 FFITFFHKK-VGEDEFLNQYYESRNIDYLGRPRRFVIYKNV----NEPTKIPPSWHAWLHHLVNEIPK--N-IQLFPWQK   78 (99)
T ss_pred             hhhhccCeE-eEEeCCCChhcccCCCccCCCceEEEEeCCC----CccccCCcchhhhhccccCCCCC--C-CCCccccC
Confidence            788999998 999999999999864  33456999999996    89999999999999999999999  3 67999998


Q ss_pred             CCc
Q psy286          248 EHT  250 (284)
Q Consensus       248 ~H~  250 (284)
                      +..
T Consensus        79 p~~   81 (99)
T PRK06630         79 NNK   81 (99)
T ss_pred             cch
Confidence            743

>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2

Probab=87.33  E-value=0.67  Score=32.31  Aligned_cols=13  Identities=23%  Similarity=0.261  Sum_probs=12.1

Q ss_pred             eeccCCCCeeeEc
Q psy286          180 QLSSSSGNKYYEN  192 (284)
Q Consensus       180 VGeDefGNKYYE~  192 (284)
                      +|.|.+||+||-.
T Consensus         5 LG~DR~~NrYwwf   17 (38)
T PF15613_consen    5 LGKDRYGNRYWWF   17 (38)
T ss_pred             ccccCCCceEEEE
Confidence            6999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00