Psyllid ID: psy2878
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | 2.2.26 [Sep-21-2011] | |||||||
| A0R1V9 | 195 | Alkyl hydroperoxide reduc | yes | N/A | 0.944 | 0.876 | 0.439 | 6e-36 | |
| Q7BHK8 | 195 | Alkyl hydroperoxide reduc | yes | N/A | 1.0 | 0.928 | 0.404 | 2e-34 | |
| Q26695 | 199 | Thioredoxin peroxidase OS | N/A | N/A | 0.834 | 0.758 | 0.408 | 9e-28 | |
| P51272 | 199 | Putative peroxiredoxin yc | N/A | N/A | 0.812 | 0.738 | 0.437 | 8e-27 | |
| Q9Y7F0 | 196 | Peroxiredoxin TSA1 OS=Can | N/A | N/A | 0.790 | 0.729 | 0.403 | 5e-26 | |
| P23161 | 178 | Putative peroxiredoxin in | N/A | N/A | 0.795 | 0.808 | 0.391 | 2e-25 | |
| P34760 | 196 | Peroxiredoxin TSA1 OS=Sac | yes | N/A | 0.834 | 0.770 | 0.402 | 2e-25 | |
| Q1XDL4 | 199 | Putative peroxiredoxin yc | N/A | N/A | 0.834 | 0.758 | 0.402 | 5e-25 | |
| Q9NL98 | 195 | Peroxiredoxin OS=Ascaris | N/A | N/A | 0.834 | 0.774 | 0.377 | 8e-25 | |
| Q21824 | 226 | Probable peroxiredoxin pr | yes | N/A | 0.790 | 0.632 | 0.377 | 1e-24 |
| >sp|A0R1V9|AHPC_MYCS2 Alkyl hydroperoxide reductase subunit C OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_4891 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 3 TIGQSLSSYRVIGVKPG--FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
TIG Y + V G + + F +T + GKW+I +F+PKDFTFVCPTE
Sbjct: 5 TIGDQFPEYDLTAVVGGDLSKVDAKQPDDYFTRVTSKDYEGKWRIIFFWPKDFTFVCPTE 64
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I+ + KL +DF +R+A +LG S DNEFV WR ++ +L L SD L G+
Sbjct: 65 IAAFGKLNEDFEDRDAKVLGVSVDNEFVHFQWRAQHEDLKTLPFPMVSDLKRELTAACGV 124
Query: 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACN 173
+ GVA RATFI DP N +Q ++V +VGRN E LR+LDA+Q+ +LCACN
Sbjct: 125 LNADGVADRATFIVDPNNEVQFVSVTAGSVGRNVDEVLRVLDALQSDELCACN 177
|
Together with AhpD, DltA and Lpd constitutes an NADH-dependent peroxidase active against hydrogen and alkyl peroxides as well as serving as a peroxynitrite reductase, thus protecting the bacterium against reactive nitrogen intermediates and oxidative stress generated by the host immune system. Does not however seem to play a role in detoxification of isoniazid. Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) (taxid: 246196) EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5 |
| >sp|Q7BHK8|AHPC_MYCTU Alkyl hydroperoxide reductase subunit C OS=Mycobacterium tuberculosis GN=ahpC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 106/183 (57%), Gaps = 2/183 (1%)
Query: 1 MKTIGQSLSSYRVIGVKPG--FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCP 58
+ TIG +Y++ + G + + F IT PGKW++ +F+PKDFTFVCP
Sbjct: 3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCP 62
Query: 59 TEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118
TEI+ ++KL +F +R+A +LG S D+EF WR ++++L L SD L
Sbjct: 63 TEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA 122
Query: 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNG 178
G+ + GVA R TFI DP N IQ ++ +VGRN E LR+LDA+Q+ +LCACN
Sbjct: 123 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDELCACNWRKGD 182
Query: 179 KTL 181
TL
Sbjct: 183 PTL 185
|
Together with AhpD, DltA and Lpd constitutes an NADH-dependent peroxidase active against hydrogen and alkyl peroxides as well as serving as a peroxynitrite reductase, thus protecting the bacterium against reactive nitrogen intermediates and oxidative stress generated by the host immune system. Does not however seem to play a role in detoxification of isoniazid. Mycobacterium tuberculosis (taxid: 1773) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q26695|TDX_TRYBR Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + +S+ GKW + +FYP DFTFVCPTEI +++ VK+FN+ + ++ S D+EF L
Sbjct: 26 FKKVDLASYRGKWVVLFFYPLDFTFVCPTEICQFSDRVKEFNDVDCEVIACSMDSEFSHL 85
Query: 91 AW---RRENSNLYKLNHWQFSDTNGSLIDQLGI-RHETGVALRATFIFDPQNIIQHITVN 146
AW R+ L +N +D S++ G+ + E GVA R FI DPQ ++ IT+N
Sbjct: 86 AWTNVERKKGGLGTMNIPILADKTKSIMKAYGVLKEEDGVAYRGLFIIDPQQNLRQITIN 145
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+L VGRN ETLR++ A Q G++C N KT+
Sbjct: 146 DLPVGRNVDETLRLVKAFQFVEKHGEVCPANWKPGSKTM 184
|
Antioxidant. Trypanosoma brucei rhodesiense (taxid: 31286) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P51272|YCF42_PORPU Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 91/160 (56%), Gaps = 13/160 (8%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK I S F K+ I +FYP DFTFVCPTEI+ ++ DF+E N +LG S D+E+ L
Sbjct: 27 FKTIKLSDFKNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHL 86
Query: 91 AW---RRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNN 147
AW RE+ L L + SD + + + GVALR FI DP+ IIQ+ TVNN
Sbjct: 87 AWLQTDRESGGLGDLEYPLVSDLKKEISIAYNVLNSGGVALRGLFIIDPKGIIQYSTVNN 146
Query: 148 LNVGRNPIETLRILDAIQ-----TGKLCACN-----RTLN 177
L GR+ ETLR+L AIQ ++C N RT+N
Sbjct: 147 LEFGRSVEETLRVLQAIQYVQAHPDEVCPANWKPGDRTMN 186
|
Reduces peroxides. May play an important role in eliminating peroxides generated during metabolism. Porphyra purpurea (taxid: 2787) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q9Y7F0|TSA1_CANAL Peroxiredoxin TSA1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TSA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 94/151 (62%), Gaps = 8/151 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F+ +T + GKW + F P FTFVCP+EI Y++ VK F E++A +L S+D+E+ L
Sbjct: 22 FEEVTLEQYKGKWVLLAFIPLAFTFVCPSEIIAYSEAVKKFAEKDAQVLFASTDSEYTWL 81
Query: 91 AW---RRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVN 146
AW R++ + K++ +DTN SL G+ E GVALR F+ DP+ +++ IT+N
Sbjct: 82 AWTNVARKDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVALRGIFLIDPKGVLRQITIN 141
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACN 173
+L VGR+ E+LR+L+A Q G++C N
Sbjct: 142 DLPVGRSVEESLRLLEAFQFTEKYGEVCPAN 172
|
Physiologically important antioxidant which constitutes an enzymatic defense against sulfur-containing radicals. Can provide protection against a thiol-containing oxidation system but not against an oxidation system without thiol. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P23161|R20K_CLOPA Putative peroxiredoxin in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 30 AFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVK 89
F + + GKW + +FYP DFTFVCPTEI+ ++K ++F + A LL S D+++
Sbjct: 23 GFTEVKLGDYKGKWLVMFFYPLDFTFVCPTEITGFSKRAEEFRDLKAELLAVSCDSQYSH 82
Query: 90 LAWRREN---SNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITV 145
W ++ L K+N SD + + GI+ E G++LR FI DP+ I+++ V
Sbjct: 83 ETWINQDIKQGGLGKINFPIASDKTTEVSTKYGIQIEEEGISLRGLFIIDPEGIVRYSVV 142
Query: 146 NNLNVGRNPIETLRILDAIQTGKLCACN 173
++LNVGR+ ETLR+L A QTG +CA +
Sbjct: 143 HDLNVGRSVDETLRVLKAFQTGGMCALD 170
|
Clostridium pasteurianum (taxid: 1501) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|P34760|TSA1_YEAST Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSA1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 91/159 (57%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F ++ + GK+ + F P FTFVCPTEI +++ K F E+ A +L S+D+E+ L
Sbjct: 22 FDEVSLDKYKGKYVVLAFIPLAFTFVCPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLL 81
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVN 146
AW R+ L +N +DTN SL G+ E GVALR FI DP+ +I+HIT+N
Sbjct: 82 AWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITIN 141
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+L VGRN E LR+++A Q G + CN T T+
Sbjct: 142 DLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATI 180
|
Physiologically important antioxidant which constitutes an enzymatic defense against sulfur-containing radicals. Can provide protection against a thiol-containing oxidation system but not against an oxidation system without thiol. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q1XDL4|YCF42_PORYE Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + S K+ + +FYP DFTFVCPTEI+ ++ F+E N +LG S D+E+ L
Sbjct: 27 FKTLKLSDLKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVSVDSEYSHL 86
Query: 91 AW---RRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNN 147
AW RE+ L L++ SD + + + GVALR FI DP+ IIQ+ T+NN
Sbjct: 87 AWLQTDRESGGLGDLSYPLVSDLKKEISAAYNVLNSDGVALRGLFIIDPKGIIQYSTINN 146
Query: 148 LNVGRNPIETLRILDAIQ-----TGKLCACNRTLNGKTL 181
L GR+ ETLR+L AIQ ++C N KT+
Sbjct: 147 LEFGRSVEETLRVLQAIQYVQSHPDEVCPANWKPGDKTM 185
|
Reduces peroxides. May play an important role in eliminating peroxides generated during metabolism. Porphyra yezoensis (taxid: 2788) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q9NL98|PRDX_ASCSU Peroxiredoxin OS=Ascaris suum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK I+ S + GK+ + +FYP DFTFVCPTEI +++ V +F + +L S+D++F L
Sbjct: 23 FKSISLSDYKGKYVVLFFYPMDFTFVCPTEIIAFSEHVGEFKKLGVEVLAASTDSQFSHL 82
Query: 91 AW---RRENSNLYKLNHWQFSDTNGSLIDQLGI-RHETGVALRATFIFDPQNIIQHITVN 146
AW R+ L ++ SD N + G+ + + G+A R FI DP+ I++ ITVN
Sbjct: 83 AWINTPRKQGGLGEMKIPIISDNNHQISRDYGVLKEDDGIAYRGLFIIDPKGILRQITVN 142
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++C T T+
Sbjct: 143 DLPVGRSVTETLRLVQAFQFVDKHGEVCPAGWTPGADTI 181
|
Antioxidant. Reduces peroxides with reducing equivalent provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Ascaris suum (taxid: 6253) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
| >sp|Q21824|TDX1_CAEEL Probable peroxiredoxin prdx-3 OS=Caenorhabditis elegans GN=prdx-3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 8/151 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FKVI++ + GKW + +FYP DFTFVCPTEI Y +F A ++ S D+ F L
Sbjct: 52 FKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHL 111
Query: 91 AW---RRENSNLYKLNHWQFSDTNGSLIDQLGI-RHETGVALRATFIFDPQNIIQHITVN 146
AW R++ L ++ +D N + D G+ E+G++ R F+ DP ++H T N
Sbjct: 112 AWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDPSGTVRHTTCN 171
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACN 173
+L VGR+ ETLR+L A Q G++C +
Sbjct: 172 DLPVGRSVDETLRVLKAFQFSDKHGEVCPAD 202
|
Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | ||||||
| 348589838 | 183 | alkyl hydroperoxide reductase protein C | 1.0 | 0.989 | 0.703 | 2e-73 | |
| 187477563 | 182 | alkyl hydroperoxide reductase [Bordetell | 1.0 | 0.994 | 0.714 | 3e-73 | |
| 451936578 | 182 | alkyl hydroperoxide reductase subunit C | 1.0 | 0.994 | 0.703 | 1e-72 | |
| 311104680 | 182 | alkylhydroperoxide reductase [Achromobac | 1.0 | 0.994 | 0.708 | 1e-72 | |
| 293603943 | 182 | alkyl hydroperoxide reductase C [Achromo | 1.0 | 0.994 | 0.703 | 3e-72 | |
| 319779217 | 183 | alkyl hydroperoxide reductase [Taylorell | 1.0 | 0.989 | 0.686 | 6e-72 | |
| 33594422 | 182 | alkyl hydroperoxide reductase [Bordetell | 1.0 | 0.994 | 0.697 | 7e-72 | |
| 451812340 | 182 | alkyl hydroperoxide reductase subunit C | 1.0 | 0.994 | 0.697 | 7e-72 | |
| 452124092 | 182 | alkylhydroperoxide reductase [Bordetella | 1.0 | 0.994 | 0.703 | 7e-72 | |
| 163856008 | 182 | alkyl hydroperoxide reductase [Bordetell | 1.0 | 0.994 | 0.703 | 8e-72 |
| >gi|348589838|ref|YP_004874300.1| alkyl hydroperoxide reductase protein C [Taylorella asinigenitalis MCE3] gi|347973742|gb|AEP36277.1| Alkyl hydroperoxide reductase protein C [Taylorella asinigenitalis MCE3] gi|399116521|emb|CCG19328.1| alkyl hydroperoxide reductase [Taylorella asinigenitalis 14/45] | Back alignment and taxonomy information |
|---|
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 128/182 (70%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G L ++V+GVKPGFN P+E+ VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGDKLDPFKVMGVKPGFNNPDEDGVSAFEEITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I YN L KDF +R+A+L+GGS DNEFVKLAWRR++S+L KL H+ FSDT GSL+DQLG+
Sbjct: 61 IVGYNNLAKDFEDRDAVLMGGSVDNEFVKLAWRRDHSDLSKLGHYSFSDTTGSLLDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R + GVALRATFI DP N+IQH+TVNNLNVGR+P ETLRILDA+QT +LC CNR G
Sbjct: 121 REKNAGVALRATFIVDPDNVIQHVTVNNLNVGRSPEETLRILDALQTEELCGCNRAAGGA 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Taylorella asinigenitalis MCE3 Species: Taylorella asinigenitalis Genus: Taylorella Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|187477563|ref|YP_785587.1| alkyl hydroperoxide reductase [Bordetella avium 197N] gi|115422149|emb|CAJ48673.1| alkyl hydroperoxide reductase [Bordetella avium 197N] | Back alignment and taxonomy information |
|---|
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 130/182 (71%), Positives = 151/182 (82%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G L S++V GVKPGFN EEN VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGDKLESFKVTGVKPGFNHHEENGVSAFEEITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I +NKL KDF +R+A+LLGGSSDNEFVKLAWRRE+ +L KL H+QF DT G+LIDQLG+
Sbjct: 61 IVGFNKLAKDFEDRDAVLLGGSSDNEFVKLAWRREHPDLNKLGHYQFGDTTGALIDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R + GVALRATFI DP N IQH++VNNLNVGRNP E LR+LD +QT +LC CNRT+ G
Sbjct: 121 REKGAGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLRLLDGLQTDELCPCNRTVGGD 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Bordetella avium 197N Species: Bordetella avium Genus: Bordetella Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|451936578|ref|YP_007460432.1| alkyl hydroperoxide reductase subunit C [Candidatus Kinetoplastibacterium oncopeltii TCC290E] gi|451777501|gb|AGF48476.1| alkyl hydroperoxide reductase subunit C [Candidatus Kinetoplastibacterium oncopeltii TCC290E] | Back alignment and taxonomy information |
|---|
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 128/182 (70%), Positives = 154/182 (84%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G+ L S+R+ GVKPGFN EEN VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGEKLESFRITGVKPGFNNHEENGVSAFEEITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I ++KL K+F +R+AIL+GGS DNEFVKLAWRRE+ L KL H+QF DT+GSLIDQLG+
Sbjct: 61 IIGFDKLSKEFEDRDAILMGGSVDNEFVKLAWRREHPGLSKLKHYQFGDTSGSLIDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R E GVALRATFI DP N+IQH++VNNL+VGRNP E LR+LD+ QTG+LC CNR ++G+
Sbjct: 121 RDENAGVALRATFIVDPDNVIQHVSVNNLSVGRNPEEVLRLLDSFQTGELCPCNRKIDGE 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Candidatus Kinetoplastibacterium oncopeltii TCC290E Species: Candidatus Kinetoplastibacterium oncopeltii Genus: Kinetoplastibacterium Family: Order: Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|311104680|ref|YP_003977533.1| alkylhydroperoxide reductase [Achromobacter xylosoxidans A8] gi|422323051|ref|ZP_16404091.1| alkyl hydroperoxide reductase [Achromobacter xylosoxidans C54] gi|423016179|ref|ZP_17006900.1| alkylhydroperoxide reductase domain-containing protein [Achromobacter xylosoxidans AXX-A] gi|310759369|gb|ADP14818.1| alkylhydroperoxide reductase domain protein [Achromobacter xylosoxidans A8] gi|317401978|gb|EFV82579.1| alkyl hydroperoxide reductase [Achromobacter xylosoxidans C54] gi|338780705|gb|EGP45106.1| alkylhydroperoxide reductase domain-containing protein [Achromobacter xylosoxidans AXX-A] | Back alignment and taxonomy information |
|---|
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/182 (70%), Positives = 150/182 (82%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G L ++V GVKPGFN EEN VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGDKLEPFKVTGVKPGFNQHEENGVSAFEDITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I +NKL KDF +R+A+LLGGSSDNEFVKLAWRRE+ +L KL H+QF DT G+LIDQLG+
Sbjct: 61 IVGFNKLAKDFEDRDAVLLGGSSDNEFVKLAWRREHPDLNKLGHYQFGDTTGALIDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R + GVALRATFI DP N IQH++VNNLNVGRNP E LR+LD +QT +LC CNRT+ G
Sbjct: 121 REKGAGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLRLLDGLQTDELCPCNRTVGGA 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Achromobacter xylosoxidans A8 Species: Achromobacter xylosoxidans Genus: Achromobacter Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|293603943|ref|ZP_06686357.1| alkyl hydroperoxide reductase C [Achromobacter piechaudii ATCC 43553] gi|359796102|ref|ZP_09298708.1| alkylhydroperoxide reductase [Achromobacter arsenitoxydans SY8] gi|421482752|ref|ZP_15930332.1| alkyl hydroperoxide reductase [Achromobacter piechaudii HLE] gi|292817636|gb|EFF76703.1| alkyl hydroperoxide reductase C [Achromobacter piechaudii ATCC 43553] gi|359365930|gb|EHK67621.1| alkylhydroperoxide reductase [Achromobacter arsenitoxydans SY8] gi|400199063|gb|EJO32019.1| alkyl hydroperoxide reductase [Achromobacter piechaudii HLE] | Back alignment and taxonomy information |
|---|
Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 128/182 (70%), Positives = 150/182 (82%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G L ++V GVKPGFN EEN VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGDKLEPFKVTGVKPGFNQHEENGVSAFEDITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I +NKL KDF +R+A+LLGGS+DNEFVKLAWRRE+ +L KL H+QF DT G+LIDQLG+
Sbjct: 61 IVGFNKLAKDFEDRDAVLLGGSTDNEFVKLAWRREHPDLNKLGHYQFGDTTGALIDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R + GVALRATFI DP N IQH++VNNLNVGRNP E LR+LD +QT +LC CNRT+ G
Sbjct: 121 REKGAGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLRLLDGLQTDELCPCNRTVGGA 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Achromobacter piechaudii ATCC 43553 Species: Achromobacter piechaudii Genus: Achromobacter Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|319779217|ref|YP_004130130.1| alkyl hydroperoxide reductase [Taylorella equigenitalis MCE9] gi|397661457|ref|YP_006502157.1| alkyl hydroperoxide reductase [Taylorella equigenitalis ATCC 35865] gi|317109241|gb|ADU91987.1| Alkyl hydroperoxide reductase protein C [Taylorella equigenitalis MCE9] gi|394349636|gb|AFN35550.1| alkyl hydroperoxide reductase [Taylorella equigenitalis ATCC 35865] gi|399114616|emb|CCG17410.1| alkyl hydroperoxide reductase [Taylorella equigenitalis 14/56] | Back alignment and taxonomy information |
|---|
Score = 275 bits (703), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 125/182 (68%), Positives = 151/182 (82%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G L ++V GVKPGFN P+E+ VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGDKLDPFKVTGVKPGFNNPDEDGVSAFEEITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I +N L KDF +R+A+L+GGS DNEFVKLAWRR++S+L KL H+ F+DT GSL+DQLG+
Sbjct: 61 IVGFNNLAKDFEDRDAVLMGGSVDNEFVKLAWRRDHSDLSKLGHYSFADTTGSLLDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R + GVALRATFI DP N+IQH+TVNNL+VGR+P ETLRILDA+QT +LC CNR G
Sbjct: 121 REKNAGVALRATFIVDPDNVIQHVTVNNLSVGRSPEETLRILDALQTEELCGCNRAAGGA 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Taylorella equigenitalis MCE9 Species: Taylorella equigenitalis Genus: Taylorella Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|33594422|ref|NP_882066.1| alkyl hydroperoxide reductase [Bordetella pertussis Tohama I] gi|33597884|ref|NP_885527.1| alkyl hydroperoxide reductase [Bordetella parapertussis 12822] gi|33602787|ref|NP_890347.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica RB50] gi|384205719|ref|YP_005591458.1| alkyl hydroperoxide reductase [Bordetella pertussis CS] gi|408416518|ref|YP_006627225.1| alkyl hydroperoxide reductase [Bordetella pertussis 18323] gi|410421262|ref|YP_006901711.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica MO149] gi|410473853|ref|YP_006897134.1| alkyl hydroperoxide reductase [Bordetella parapertussis Bpp5] gi|412341879|ref|YP_006970634.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica 253] gi|427815803|ref|ZP_18982867.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica 1289] gi|427818352|ref|ZP_18985415.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica D445] gi|427825785|ref|ZP_18992847.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica Bbr77] gi|33564497|emb|CAE43811.1| alkyl hydroperoxide reductase [Bordetella pertussis Tohama I] gi|33574313|emb|CAE38646.1| alkyl hydroperoxide reductase [Bordetella parapertussis] gi|33577229|emb|CAE35786.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica RB50] gi|332383833|gb|AEE68680.1| alkyl hydroperoxide reductase [Bordetella pertussis CS] gi|401778688|emb|CCJ64132.1| alkyl hydroperoxide reductase [Bordetella pertussis 18323] gi|408443963|emb|CCJ50658.1| alkyl hydroperoxide reductase [Bordetella parapertussis Bpp5] gi|408448557|emb|CCJ60240.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica MO149] gi|408771713|emb|CCJ56517.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica 253] gi|410566803|emb|CCN24372.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica 1289] gi|410569352|emb|CCN17452.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica D445] gi|410591050|emb|CCN06146.1| alkyl hydroperoxide reductase [Bordetella bronchiseptica Bbr77] | Back alignment and taxonomy information |
|---|
Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 127/182 (69%), Positives = 150/182 (82%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G L ++V GVKPGFN EEN VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGDKLEPFKVTGVKPGFNQHEENGVSAFEDITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I +NKL KDF +R+A+LLGGS+DNEFVKLAWRRE+ +L KL H+QF DT G+LIDQLG+
Sbjct: 61 IVGFNKLAKDFEDRDAVLLGGSTDNEFVKLAWRREHPDLNKLGHYQFGDTTGALIDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R + GVALRATFI DP N IQH++VNNLNVGRNP E LR+LD +QT +LC CNR++ G
Sbjct: 121 REKGAGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLRLLDGLQTDELCPCNRSVGGA 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Bordetella pertussis Tohama I Species: Bordetella pertussis Genus: Bordetella Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|451812340|ref|YP_007448794.1| alkyl hydroperoxide reductase subunit C [Candidatus Kinetoplastibacterium galatii TCC219] gi|451778242|gb|AGF49190.1| alkyl hydroperoxide reductase subunit C [Candidatus Kinetoplastibacterium galatii TCC219] | Back alignment and taxonomy information |
|---|
Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 127/182 (69%), Positives = 154/182 (84%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G+ L S+R+ GVKPGFN EEN VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGEKLESFRITGVKPGFNNYEENGVSAFEEITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I ++ L K+F +R+AIL+GGS DNEFVKLAWRRE+ L KL H+QF DT+GSLIDQLG+
Sbjct: 61 IIGFDNLSKEFEDRDAILMGGSVDNEFVKLAWRREHPGLSKLKHYQFGDTSGSLIDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R E +GVALRATFI DP N+IQH++VNNL+VGRNP E LR+LD+ QTG+LC CNR ++G+
Sbjct: 121 RDENSGVALRATFIVDPDNVIQHVSVNNLSVGRNPEEVLRLLDSFQTGELCPCNREIDGE 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Candidatus Kinetoplastibacterium galatii TCC219 Species: Candidatus Kinetoplastibacterium galatii Genus: Kinetoplastibacterium Family: Order: Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|452124092|ref|ZP_21936676.1| alkylhydroperoxide reductase [Bordetella holmesii F627] gi|452127477|ref|ZP_21940058.1| alkylhydroperoxide reductase [Bordetella holmesii H558] gi|451923322|gb|EMD73463.1| alkylhydroperoxide reductase [Bordetella holmesii F627] gi|451926757|gb|EMD76887.1| alkylhydroperoxide reductase [Bordetella holmesii H558] | Back alignment and taxonomy information |
|---|
Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 128/182 (70%), Positives = 149/182 (81%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G L ++V GVKPGFN EEN VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGDKLEPFKVTGVKPGFNQYEENGVSAFEEITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I +NKL KDF +R+A+LLGGSSDNEFVKLAWRRE+ +L KL H+QF DT G+LIDQLG+
Sbjct: 61 IVGFNKLAKDFEDRDAVLLGGSSDNEFVKLAWRREHPDLNKLGHYQFGDTTGALIDQLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R + GVALRATFI DP N IQH++VNNLNVGRNP E LR+LD +QT +LC CNR + G
Sbjct: 121 REKGAGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLRLLDGLQTDELCPCNRNVGGA 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Bordetella holmesii F627 Species: Bordetella holmesii Genus: Bordetella Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|163856008|ref|YP_001630306.1| alkyl hydroperoxide reductase [Bordetella petrii DSM 12804] gi|163259736|emb|CAP42037.1| alkyl hydroperoxide reductase [Bordetella petrii] | Back alignment and taxonomy information |
|---|
Score = 275 bits (702), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 128/182 (70%), Positives = 149/182 (81%), Gaps = 1/182 (0%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MKT+G L ++V GVKPGFN EEN VSAF+ ITESSFPGKWK+ YFYPKDFTFVCPTE
Sbjct: 1 MKTVGDKLEPFKVTGVKPGFNQHEENGVSAFEDITESSFPGKWKVIYFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I +NKL KDF +R+A+LLGGS DNEFVKLAWRRE+ +L KL H+QF DT GSL+DQLG+
Sbjct: 61 IVGFNKLAKDFEDRDAVLLGGSVDNEFVKLAWRREHPDLNKLGHYQFGDTTGSLVDQLGV 120
Query: 121 RHET-GVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R + GVALRATFI DP N IQH++VNNLNVGRNP E LR+LD +QT +LC CNRT+ G
Sbjct: 121 RDKNEGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLRLLDGLQTDELCPCNRTVGGA 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
Source: Bordetella petrii DSM 12804 Species: Bordetella petrii Genus: Bordetella Family: Alcaligenaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | ||||||
| UNIPROTKB|Q0BXT1 | 185 | ahpC "Alkylhydroperoxide reduc | 1.0 | 0.978 | 0.609 | 5e-60 | |
| TIGR_CMR|CBU_1477 | 179 | CBU_1477 "antioxidant, AhpC/TS | 0.861 | 0.871 | 0.525 | 2.1e-38 | |
| UNIPROTKB|Q7BHK8 | 195 | ahpC "Alkyl hydroperoxide redu | 0.988 | 0.917 | 0.408 | 1.8e-32 | |
| TIGR_CMR|GSU_0893 | 223 | GSU_0893 "thioredoxin peroxida | 0.983 | 0.798 | 0.395 | 2.2e-27 | |
| CGD|CAL0005458 | 196 | TSA1 [Candida albicans (taxid: | 0.790 | 0.729 | 0.403 | 7.6e-25 | |
| CGD|CAF0007120 | 196 | TSA1B [Candida albicans (taxid | 0.790 | 0.729 | 0.403 | 7.6e-25 | |
| UNIPROTKB|Q9Y7F0 | 196 | TSA1 "Peroxiredoxin TSA1" [Can | 0.790 | 0.729 | 0.403 | 7.6e-25 | |
| UNIPROTKB|E1BR10 | 257 | PRDX3 "Uncharacterized protein | 0.983 | 0.692 | 0.368 | 1.6e-24 | |
| UNIPROTKB|E2RRD4 | 257 | PRDX3 "Uncharacterized protein | 0.834 | 0.587 | 0.389 | 1.6e-24 | |
| SGD|S000004490 | 196 | TSA1 "Thioredoxin peroxidase" | 0.834 | 0.770 | 0.402 | 1.6e-24 |
| UNIPROTKB|Q0BXT1 ahpC "Alkylhydroperoxide reductase C" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 111/182 (60%), Positives = 144/182 (79%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
M IGQ L +++ GVKP F E+N SAF+ + + SFPG WK+ +FYPKDFTFVCPTE
Sbjct: 1 MLGIGQKLPDFQITGVKPKFMQHEQNGESAFEPLNQDSFPGLWKVIFFYPKDFTFVCPTE 60
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I+E+ +L +F +R+A++LGGS+DNEFVKLAWRRE+++L +L WQF+DTNGSL+D LG+
Sbjct: 61 IAEFARLAPEFADRDAVILGGSTDNEFVKLAWRREHADLRELPIWQFADTNGSLVDGLGV 120
Query: 121 RHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
R E GVA RAT+I DP N+IQH+ V NLNVGRNP +TLR+LDA+QT +LC CNR + GK
Sbjct: 121 REEGAGVAYRATYIVDPHNVIQHVYVTNLNVGRNPQDTLRVLDALQTDELCPCNRPVGGK 180
Query: 180 TL 181
TL
Sbjct: 181 TL 182
|
|
| TIGR_CMR|CBU_1477 CBU_1477 "antioxidant, AhpC/TSA family" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 84/160 (52%), Positives = 110/160 (68%)
Query: 18 PGFNLPE--ENNVS-AFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER 74
P F+L N+V+ AF I E S+ KW + +F+PKDFTFVCPTEI+E+ +L +F +R
Sbjct: 9 PSFSLKAVISNDVNKAFTEINEKSYANKWLVLFFWPKDFTFVCPTEIAEFGRLNGEFADR 68
Query: 75 NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET-GVALRATFI 133
+A +LG S D+EFV LAWRRE L +L SD L +LGI +E GVA RATFI
Sbjct: 69 DAQVLGASVDSEFVHLAWRREKEELSQLPFPMLSDIRRDLSQRLGILNEKEGVAERATFI 128
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACN 173
DP +I++ + VN+LNVGRNP E LR+LDA+QT +LC CN
Sbjct: 129 VDPNHIVRFVMVNDLNVGRNPQEVLRVLDALQTDELCPCN 168
|
|
| UNIPROTKB|Q7BHK8 ahpC "Alkyl hydroperoxide reductase subunit C" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 74/181 (40%), Positives = 105/181 (58%)
Query: 3 TIGQSLSSYRVIGVKPG--FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
TIG +Y++ + G + + F IT PGKW++ +F+PKDFTFVCPTE
Sbjct: 5 TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTE 64
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I+ ++KL +F +R+A +LG S D+EF WR ++++L L SD L G+
Sbjct: 65 IAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV 124
Query: 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGKT 180
+ GVA R TFI DP N IQ ++ +VGRN E LR+LDA+Q+ +LCACN T
Sbjct: 125 LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDELCACNWRKGDPT 184
Query: 181 L 181
L
Sbjct: 185 L 185
|
|
| TIGR_CMR|GSU_0893 GSU_0893 "thioredoxin peroxidase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 72/182 (39%), Positives = 100/182 (54%)
Query: 2 KTIGQSLSSYRVIGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
K + QS ++G P F+L N FK + + + GKW + +FYP DFTFVCPTE
Sbjct: 42 KGMVQSEPERAMVGEPAPAFSLEAVVN-KEFKRVNLADYRGKWVVLFFYPGDFTFVCPTE 100
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120
I +N V F E NA++LG S D++F LAW +L L +D + GI
Sbjct: 101 IRGFNAAVDRFTELNAVVLGASVDSKFSHLAWINRG-DLGDLKFPLLADNKKEATIRYGI 159
Query: 121 RHET-GVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNGK 179
E GVALR FI DP ++Q+ V +VGR+ ET+R+L+A+QTG+LC K
Sbjct: 160 LDEKEGVALRGLFIIDPNGVLQYQVVQTPSVGRSVEETIRVLEALQTGELCPLGWKPGEK 219
Query: 180 TL 181
T+
Sbjct: 220 TI 221
|
|
| CGD|CAL0005458 TSA1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/151 (40%), Positives = 94/151 (62%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F+ +T + GKW + F P FTFVCP+EI Y++ VK F E++A +L S+D+E+ L
Sbjct: 22 FEEVTLEQYKGKWVLLAFIPLAFTFVCPSEIIAYSEAVKKFAEKDAQVLFASTDSEYTWL 81
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVN 146
AW R++ + K++ +DTN SL G+ E GVALR F+ DP+ +++ IT+N
Sbjct: 82 AWTNVARKDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVALRGIFLIDPKGVLRQITIN 141
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACN 173
+L VGR+ E+LR+L+A Q G++C N
Sbjct: 142 DLPVGRSVEESLRLLEAFQFTEKYGEVCPAN 172
|
|
| CGD|CAF0007120 TSA1B [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/151 (40%), Positives = 94/151 (62%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F+ +T + GKW + F P FTFVCP+EI Y++ VK F E++A +L S+D+E+ L
Sbjct: 22 FEEVTLEQYKGKWVLLAFIPLAFTFVCPSEIIAYSEAVKKFAEKDAQVLFASTDSEYTWL 81
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVN 146
AW R++ + K++ +DTN SL G+ E GVALR F+ DP+ +++ IT+N
Sbjct: 82 AWTNVARKDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVALRGIFLIDPKGVLRQITIN 141
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACN 173
+L VGR+ E+LR+L+A Q G++C N
Sbjct: 142 DLPVGRSVEESLRLLEAFQFTEKYGEVCPAN 172
|
|
| UNIPROTKB|Q9Y7F0 TSA1 "Peroxiredoxin TSA1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/151 (40%), Positives = 94/151 (62%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F+ +T + GKW + F P FTFVCP+EI Y++ VK F E++A +L S+D+E+ L
Sbjct: 22 FEEVTLEQYKGKWVLLAFIPLAFTFVCPSEIIAYSEAVKKFAEKDAQVLFASTDSEYTWL 81
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVN 146
AW R++ + K++ +DTN SL G+ E GVALR F+ DP+ +++ IT+N
Sbjct: 82 AWTNVARKDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVALRGIFLIDPKGVLRQITIN 141
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACN 173
+L VGR+ E+LR+L+A Q G++C N
Sbjct: 142 DLPVGRSVEESLRLLEAFQFTEKYGEVCPAN 172
|
|
| UNIPROTKB|E1BR10 PRDX3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 69/187 (36%), Positives = 101/187 (54%)
Query: 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEIS 62
T+G S + V P F N FK +T F GK+ + +FYP DFTFVCPTEI
Sbjct: 56 TLGASRLAPAVTQHAPFFKGTAVVN-GEFKELTLDDFKGKYLVLFFYPLDFTFVCPTEIV 114
Query: 63 EYNKLVKDFNERNAILLGGSSDNEFVKLAW---RRENSNLYKLNHWQFSDTNGSLIDQLG 119
++ +F++ N ++ S D+ F LAW R++ L K+N SD + G
Sbjct: 115 AFSNKANEFHDVNCEVVAVSVDSHFCHLAWINTPRKSGGLGKMNIPVLSDLTKQISRDYG 174
Query: 120 IRHE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACNR 174
+ E G+ALR FI DP II+H+++N+L VGR+ ETLR++ A Q G++C N
Sbjct: 175 VLLEGPGIALRGLFIIDPNGIIKHLSINDLPVGRSVEETLRLVKAFQYVETHGEVCPANW 234
Query: 175 TLNGKTL 181
T + T+
Sbjct: 235 TPDSPTI 241
|
|
| UNIPROTKB|E2RRD4 PRDX3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 62/159 (38%), Positives = 92/159 (57%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK +T F G++ + +FYP DFTFVCPTEI ++ K+F++ N ++ S D+ F L
Sbjct: 83 FKDLTLDDFKGRYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDVNCDVVAVSVDSHFTHL 142
Query: 91 AW---RRENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R+N L +N SD + G+ E G+ALR FI DP +I+H++VN
Sbjct: 143 AWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGIALRGLFIIDPNGVIKHLSVN 202
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++C N T + T+
Sbjct: 203 DLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 241
|
|
| SGD|S000004490 TSA1 "Thioredoxin peroxidase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 64/159 (40%), Positives = 91/159 (57%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F ++ + GK+ + F P FTFVCPTEI +++ K F E+ A +L S+D+E+ L
Sbjct: 22 FDEVSLDKYKGKYVVLAFIPLAFTFVCPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLL 81
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVN 146
AW R+ L +N +DTN SL G+ E GVALR FI DP+ +I+HIT+N
Sbjct: 82 AWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITIN 141
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+L VGRN E LR+++A Q G + CN T T+
Sbjct: 142 DLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATI 180
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9V3P0 | PRDX1_DROME | 1, ., 1, 1, ., 1, ., 1, 5 | 0.3647 | 0.8342 | 0.7783 | yes | N/A |
| P57279 | TSAA_BUCAI | 1, ., 1, 1, ., 1, ., 1, 5 | 0.3900 | 0.7348 | 0.6751 | yes | N/A |
| P0AE09 | AHPC_ECOL6 | 1, ., 1, 1, ., 1, ., 1, 5 | 0.3493 | 0.7734 | 0.7486 | yes | N/A |
| P0AE11 | AHPC_SHIFL | 1, ., 1, 1, ., 1, ., 1, 5 | 0.3493 | 0.7734 | 0.7486 | yes | N/A |
| O74887 | TSA1_SCHPO | 1, ., 1, 1, ., 1, ., 1, 5 | 0.3881 | 0.7955 | 0.75 | yes | N/A |
| A0R1V9 | AHPC_MYCS2 | 1, ., 1, 1, ., 1, ., 1, 5 | 0.4393 | 0.9447 | 0.8769 | yes | N/A |
| O34564 | YKUU_BACSU | No assigned EC number | 0.4275 | 0.7679 | 0.7722 | yes | N/A |
| P34760 | TSA1_YEAST | 1, ., 1, 1, ., 1, ., 1, 5 | 0.4025 | 0.8342 | 0.7704 | yes | N/A |
| Q7BHK8 | AHPC_MYCTU | 1, ., 1, 1, ., 1, ., 1, 5 | 0.4043 | 1.0 | 0.9282 | yes | N/A |
| Q21824 | TDX1_CAEEL | 1, ., 1, 1, ., 1, ., 1, 5 | 0.3774 | 0.7900 | 0.6327 | yes | N/A |
| Q89AS1 | TSAA_BUCBP | 1, ., 1, 1, ., 1, ., 1, 5 | 0.4306 | 0.7127 | 0.6482 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 181 | |||
| cd03015 | 173 | cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, | 4e-68 | |
| COG0450 | 194 | COG0450, AhpC, Peroxiredoxin [Posttranslational mo | 5e-58 | |
| cd02971 | 140 | cd02971, PRX_family, Peroxiredoxin (PRX) family; c | 3e-41 | |
| PTZ00253 | 199 | PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi | 4e-37 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 2e-32 | |
| TIGR03137 | 187 | TIGR03137, AhpC, peroxiredoxin | 6e-32 | |
| PRK10382 | 187 | PRK10382, PRK10382, alkyl hydroperoxide reductase | 2e-28 | |
| PRK15000 | 200 | PRK15000, PRK15000, peroxidase; Provisional | 7e-27 | |
| PTZ00137 | 261 | PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision | 3e-23 | |
| COG1225 | 157 | COG1225, Bcp, Peroxiredoxin [Posttranslational mod | 5e-22 | |
| cd03016 | 203 | cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c | 4e-21 | |
| PRK13189 | 222 | PRK13189, PRK13189, peroxiredoxin; Provisional | 2e-20 | |
| cd03017 | 140 | cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact | 8e-20 | |
| cd03018 | 149 | cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family | 2e-18 | |
| PRK13599 | 215 | PRK13599, PRK13599, putative peroxiredoxin; Provis | 1e-17 | |
| PRK13190 | 202 | PRK13190, PRK13190, putative peroxiredoxin; Provis | 2e-16 | |
| PRK13191 | 215 | PRK13191, PRK13191, putative peroxiredoxin; Provis | 2e-13 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 3e-09 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 1e-04 | |
| PRK09437 | 154 | PRK09437, bcp, thioredoxin-dependent thiol peroxid | 1e-04 |
| >gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 4e-68
Identities = 73/164 (44%), Positives = 98/164 (59%), Gaps = 8/164 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F FK I+ S + GKW + +FYP DFTFVCPTEI ++ ++F + NA
Sbjct: 6 PDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAE 65
Query: 78 LLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFI 133
+LG S+D+ F LAWR R+ L K+N +D + G+ E GVALR TFI
Sbjct: 66 VLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFI 125
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACN 173
DP+ II+HITVN+L VGR+ ETLR+LDA+Q G++C N
Sbjct: 126 IDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPAN 169
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173 |
| >gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 5e-58
Identities = 71/189 (37%), Positives = 101/189 (53%), Gaps = 17/189 (8%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
M IG+ + V G F+ IT S + GKW + +FYP DFTFVCPTE
Sbjct: 2 MSLIGKKAPDFTANAVLGGE---------IFEEITLSDYYGKWVVLFFYPADFTFVCPTE 52
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQ 117
I + K ++F +R ++G S+D+ F AW+ RE + K+ +D G +
Sbjct: 53 IIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112
Query: 118 LGIRH-ETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCAC 172
G+ H E G+ALR TFI DP +I+HI VN L +GRN E LR++DA+Q G++C
Sbjct: 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQFVAKHGEVCPA 172
Query: 173 NRTLNGKTL 181
N KT+
Sbjct: 173 NWKPGDKTI 181
|
Length = 194 |
| >gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-41
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F LP + ++ S F GKW + +FYPKDFT VC TE+ + L ++F + A
Sbjct: 3 PDFTLPATD----GGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAE 58
Query: 78 LLGGSSDNEFVKLAWRRENSNL-YKLNHWQFSDTNGSLIDQLGIRHE----TGVALRATF 132
+LG S D+ F AW + L + L SD +G G+ E G+A RATF
Sbjct: 59 VLGVSVDSPFSHKAWAEKEGGLNFPL----LSDPDGEFAKAYGVLIEKSAGGGLAARATF 114
Query: 133 IFDPQNIIQHITVNNLNVGRNPIETL 158
I DP I+++ V L GRN E L
Sbjct: 115 IIDPDGKIRYVEVEPLPTGRNAEELL 140
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140 |
| >gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 4e-37
Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 8/160 (5%)
Query: 30 AFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVK 89
+FK I+ SS+ GKW + +FYP DFTFVCPTEI +++ VK FNE N +L S D+E+
Sbjct: 25 SFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84
Query: 90 LAW---RRENSNLYKLNHWQFSDTNGSLIDQLGI-RHETGVALRATFIFDPQNIIQHITV 145
L W R+ L + +D S+ G+ E GVA R FI DP+ +++ ITV
Sbjct: 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITV 144
Query: 146 NNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
N++ VGRN E LR+L+A Q G++C N T+
Sbjct: 145 NDMPVGRNVEEVLRLLEAFQFVEKHGEVCPANWKKGDPTM 184
|
Length = 199 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-32
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
+G K P F LP+ + K ++ S + GKW + +FYPKDFT VC TE+ L ++F
Sbjct: 1 VGDKAPDFELPDLD----GKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFK 56
Query: 73 ERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRAT 131
+ +LG S D+ + + + L SD +G + G+ +E G+ALR T
Sbjct: 57 KLGVEVLGVSVDSPESHKKFAEKLGLPFPL----LSDPDGEVAKAYGVLNEEEGLALRTT 112
Query: 132 FIFDPQNIIQHI 143
F+ DP I++I
Sbjct: 113 FVIDPDGKIRYI 124
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 6e-32
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F +T+ GKW +F+FYP DFTFVCPTE+ + + + + S+D FV
Sbjct: 21 FVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADNYAELKKLGVEVYSVSTDTHFVHK 80
Query: 91 AWRRENSNLYKLNHWQFSDTNGSLIDQLGI-RHETGVALRATFIFDPQNIIQHITVNNLN 149
AW + + K+ + D G L G+ E G+A R TF+ DP+ +IQ + +++
Sbjct: 81 AWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIHDNG 140
Query: 150 VGRNPIETLRILDAIQ 165
+GR+ E LR + A Q
Sbjct: 141 IGRDASELLRKIKAAQ 156
|
This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187 |
| >gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-28
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 16 VKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75
+KP N +N F +TE G+W +F+FYP DFTFVCPTE+ + ++ +
Sbjct: 8 IKPFKNQAFKN--GEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG 65
Query: 76 AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL-GIRHETGVALRATFIF 134
+ S+D F AW + + K+ + D G+L +R + G+A RATF+
Sbjct: 66 VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVV 125
Query: 135 DPQNIIQHITVNNLNVGRNPIETLRILDAIQ-----TGKLCACNRTLNGKTL 181
DPQ IIQ I V +GR+ + LR + A Q G++C TL
Sbjct: 126 DPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATL 177
|
Length = 187 |
| >gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-27
Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 8/138 (5%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR---ENS 97
GK + +F+P DFTFVCP+E+ ++K ++F +R ++G S D+EFV AWR +
Sbjct: 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKG 93
Query: 98 NLYKLNHWQFSDTNGSLIDQLGIRH-ETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156
+ + + +D + GI H + GVALR +F+ D I++H VN+L +GRN E
Sbjct: 94 GIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDE 153
Query: 157 TLRILDAIQ----TGKLC 170
LR++DA+Q G +C
Sbjct: 154 MLRMVDALQFHEEHGDVC 171
|
Length = 200 |
| >gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 3e-23
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR---E 95
F + + FYP DFTFVCP+E+ +++ +K+F ER +LG S D+ F AW+
Sbjct: 96 FKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVR 155
Query: 96 NSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155
+ L FSD + + G+ + G + RA+ + D +++H+ V +L +GR+
Sbjct: 156 QGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVD 215
Query: 156 ETLRILDAIQ----TGKLCACN 173
ETLR+ DA+Q TG +C N
Sbjct: 216 ETLRLFDAVQFAEKTGNVCPVN 237
|
Length = 261 |
| >gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 5e-22
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
+G K P F LP+++ + ++ S GK + YFYPKDFT C TE ++ L+++F
Sbjct: 6 VGDKAPDFELPDQDG----ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFE 61
Query: 73 ERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETG------- 125
+ A++LG S D+ + + + L SD +G + + G+ E
Sbjct: 62 KLGAVVLGISPDSPKSHKKFAEK----HGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYM 117
Query: 126 VALRATFIFDPQNIIQHI 143
R+TF+ DP I+++
Sbjct: 118 GIERSTFVIDPDGKIRYV 135
|
Length = 157 |
| >gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 4e-21
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYK 101
W I + +P DFT VC TE+ + KL +F +RN L+G S D+ + W E+ Y
Sbjct: 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW-IEDIEEYT 84
Query: 102 LNHWQF---SDTNGSLIDQLGIRHE---TGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155
F +D + + LG+ + + +RA FI DP I+ I GRN
Sbjct: 85 GVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFD 144
Query: 156 ETLRILDAIQTG 167
E LR++DA+Q
Sbjct: 145 EILRVVDALQLT 156
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203 |
| >gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-20
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR---E 95
+ GKW + + +P DFT VC TE + K +F E N L+G S D F + W E
Sbjct: 33 YKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKE 92
Query: 96 NSNLYKLNHWQFSDTNGSLIDQLGIRHETG--VALRATFIFDPQNIIQHITVNNLNVGRN 153
+ ++ +D G + +LG+ +RA FI DP+ II+ I VGRN
Sbjct: 93 KLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRN 151
Query: 154 PIETLRILDAIQT 166
E LR++ A+QT
Sbjct: 152 MDEILRLVKALQT 164
|
Length = 222 |
| >gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 8e-20
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F LP+++ + ++ S GK + YFYPKD T C E ++ L ++F A+
Sbjct: 4 PDFTLPDQDG----ETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAV 59
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQF---SDTNGSLIDQLGIRHE----TGVALRA 130
++G S D+ + + Y L F SD +G L G+ E R+
Sbjct: 60 VIGVSPDSVESHAKFAEK----YGLP---FPLLSDPDGKLAKAYGVWGEKKKKYMGIERS 112
Query: 131 TFIFDPQNIIQHI 143
TF+ DP I +
Sbjct: 113 TFLIDPDGKIVKV 125
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140 |
| >gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-18
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWK-IFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
P F LP++N + + S F G+ + F+P FT VC E+ ++ F A
Sbjct: 8 PDFELPDQN----GQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGA 63
Query: 77 ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN--GSLIDQLGIRHET-GVALRATFI 133
+LG S D+ F AW EN + L SD G + G+ E GVA RA F+
Sbjct: 64 EVLGISVDSPFSLRAWAEENGLTFPL----LSDFWPHGEVAKAYGVFDEDLGVAERAVFV 119
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDA 163
D II++ V++ R+ + LDA
Sbjct: 120 IDRDGIIRYAWVSDDGEPRDLPDYDEALDA 149
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149 |
| >gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (189), Expect = 1e-17
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE 60
MK +G+ S V+ + LPE+ + GKW + + +P DFT VC TE
Sbjct: 1 MKLLGEKFPSMEVVTTQGVKRLPED-------------YAGKWFVLFSHPADFTPVCTTE 47
Query: 61 ISEYNKLVKDFNERNAILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQ 117
E+ + DF E N L+G S D F + W ++N+N+ + +D G + +Q
Sbjct: 48 FVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNI-AIPFPVIADDLGKVSNQ 106
Query: 118 LGIRH--ETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTG 167
LG+ H + +RA FI D + I+ I VGRN E LR L A+QT
Sbjct: 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTA 158
|
Length = 215 |
| >gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-16
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 16 VKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75
VK G P+ + I S + GKW + + +P DFT VC TE +++ +DF +
Sbjct: 2 VKLGQKAPDFTVNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG 61
Query: 76 AILLGGSSDNEFVKLAWRRENSNLYKLNHWQF---SDTNGSLIDQLGIRHE-TGVALRAT 131
L+G S D+ + +AW R+ + + F +D + L + + E +G +R
Sbjct: 62 VELVGLSVDSIYSHIAWLRDIEERFGIK-IPFPVIADIDKELAREYNLIDENSGATVRGV 120
Query: 132 FIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165
FI DP I++ + GRN E +RI A+Q
Sbjct: 121 FIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154
|
Length = 202 |
| >gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-13
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR--EN 96
+ G+W + + +P DFT VC TE + K ++F + N L+G S D+ + W E
Sbjct: 31 YKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEK 90
Query: 97 SNLYKLNHWQFSDTNGSLIDQLGIRH-ETGVA-LRATFIFDPQNIIQHITVNNLNVGRNP 154
+ ++ +D G++ +LG+ H E+ A +RA FI D + ++ I + +GRN
Sbjct: 91 NLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNI 150
Query: 155 IETLRILDAIQ 165
E LR + A+Q
Sbjct: 151 DEILRAIRALQ 161
|
Length = 215 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-09
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 9/143 (6%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA- 76
P F LP+ K ++ S F GK + F+P F C E KL K + +
Sbjct: 6 PDFTLPDVA--LDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVD 63
Query: 77 -ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFD 135
+ + S+D FV W +E Y + +D +G+ G+ + G+ F+ D
Sbjct: 64 VVAVNASNDPFFVMNFWAKEGLK-YPV----LADRDGAFTKAYGLTEDAGLRTPRYFLID 118
Query: 136 PQNIIQHITVNNLNVGRNPIETL 158
+ ++ V + E +
Sbjct: 119 EDGKVVYLEVGPDPGDVSDAEAV 141
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 32 KVITESSFPGKWKIFYFY-----PKDFTFVCPTEISEYNKLVKDFNERNAILLG---GSS 83
K ++ S GK + F+ P C E+ E L K++ + ++G
Sbjct: 10 KPVSLSDLKGKVVLVNFWASWCPP------CRAEMPELEALAKEYKDDGVEVVGVNVDDD 63
Query: 84 DNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHI 143
D VK A+ ++ Y + D +G L G+R L TF+ D I+
Sbjct: 64 DPAAVK-AFLKK----YGITFPVLLDPDGELAKAYGVR-----GLPTTFLIDRDGRIRAR 113
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F+LP+++ ++ + F G+ + YFYPK T C + + + + +
Sbjct: 11 PKFSLPDQDGEQ----VSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVV 66
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET--------GVALR 129
+LG S+D KL+ E LN SD + + +Q G+ E G+ R
Sbjct: 67 VLGISTDKP-EKLSRFAEKEL---LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIH-R 121
Query: 130 ATFIFDPQNIIQHI 143
+F+ D I+H+
Sbjct: 122 ISFLIDADGKIEHV 135
|
Length = 154 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 100.0 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 100.0 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 100.0 | |
| PRK15000 | 200 | peroxidase; Provisional | 100.0 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 100.0 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 100.0 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 100.0 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 100.0 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 100.0 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 100.0 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 100.0 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 100.0 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 100.0 | |
| KOG0852|consensus | 196 | 100.0 | ||
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.97 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.97 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.97 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.97 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.97 | |
| KOG0854|consensus | 224 | 99.97 | ||
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.96 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.96 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.96 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.95 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.95 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.94 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.93 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.93 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.93 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.93 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.93 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.92 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.92 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.92 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.92 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.92 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.9 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.9 | |
| KOG0855|consensus | 211 | 99.9 | ||
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.89 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.89 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.87 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.87 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.86 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.86 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.85 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.84 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.83 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.82 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.82 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.77 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 99.74 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.73 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.72 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.66 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 99.61 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.59 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.55 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.5 | |
| KOG2792|consensus | 280 | 99.43 | ||
| KOG0541|consensus | 171 | 99.43 | ||
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.41 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.36 | |
| KOG1651|consensus | 171 | 99.33 | ||
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.27 | |
| KOG2501|consensus | 157 | 99.25 | ||
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.25 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.24 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 99.22 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.17 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.13 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.12 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.11 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.04 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.03 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 98.99 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 98.98 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.97 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 98.92 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 98.92 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 98.91 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 98.88 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 98.87 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 98.86 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 98.86 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 98.84 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 98.83 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 98.81 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.81 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 98.81 | |
| KOG0910|consensus | 150 | 98.8 | ||
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 98.8 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 98.79 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 98.79 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 98.78 | |
| PHA02278 | 103 | thioredoxin-like protein | 98.77 | |
| KOG0907|consensus | 106 | 98.76 | ||
| PTZ00051 | 98 | thioredoxin; Provisional | 98.73 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 98.73 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 98.72 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 98.71 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.69 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.68 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 98.67 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 98.67 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 98.66 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 98.66 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 98.62 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.62 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.61 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.59 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 98.59 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 98.58 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.57 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.56 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 98.54 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 98.52 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.52 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.47 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.45 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.45 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.39 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.37 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 98.36 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.33 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.32 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.31 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.3 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.29 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 98.28 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.22 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.21 | |
| KOG4498|consensus | 197 | 98.21 | ||
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.18 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.16 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 98.06 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 98.06 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 97.95 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.94 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 97.93 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 97.89 | |
| smart00594 | 122 | UAS UAS domain. | 97.85 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 97.75 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 97.75 | |
| PHA02125 | 75 | thioredoxin-like protein | 97.72 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 97.72 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 97.7 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 97.68 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.61 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.52 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 97.34 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 97.14 | |
| KOG0190|consensus | 493 | 96.97 | ||
| PF10417 | 40 | 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredox | 96.8 | |
| KOG0908|consensus | 288 | 96.63 | ||
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 96.62 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.48 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 96.32 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 96.03 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 95.89 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 95.86 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 95.6 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 95.6 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 95.57 | |
| KOG0190|consensus | 493 | 95.49 | ||
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 95.46 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 95.21 | |
| KOG0191|consensus | 383 | 95.01 | ||
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 94.97 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 94.62 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 94.44 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 94.23 | |
| KOG3425|consensus | 128 | 94.23 | ||
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 94.01 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 93.85 | |
| KOG0912|consensus | 375 | 93.81 | ||
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 93.55 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 93.12 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 93.07 | |
| KOG0191|consensus | 383 | 93.04 | ||
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 93.04 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 92.89 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 92.78 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 92.7 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 92.55 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 92.51 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 92.0 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 91.88 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 91.87 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 91.57 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 91.54 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 91.51 | |
| cd02979 | 167 | PHOX_C FAD-dependent Phenol hydoxylase (PHOX) fami | 91.34 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 90.86 | |
| TIGR03765 | 105 | ICE_PFL_4695 integrating conjugative element prote | 90.76 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 90.62 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 90.22 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 90.03 | |
| COG3054 | 184 | Predicted transcriptional regulator [General funct | 89.94 | |
| KOG1731|consensus | 606 | 89.87 | ||
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 89.74 | |
| PF11072 | 142 | DUF2859: Protein of unknown function (DUF2859); In | 89.23 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 88.56 | |
| PF06491 | 136 | Disulph_isomer: Disulphide isomerase; InterPro: IP | 88.45 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 88.12 | |
| PF07976 | 169 | Phe_hydrox_dim: Phenol hydroxylase, C-terminal dim | 86.4 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 86.21 | |
| cd02977 | 105 | ArsC_family Arsenate Reductase (ArsC) family; comp | 86.08 | |
| cd03032 | 115 | ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub | 85.81 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 85.53 | |
| cd03036 | 111 | ArsC_like Arsenate Reductase (ArsC) family, unknow | 84.71 | |
| PRK01655 | 131 | spxA transcriptional regulator Spx; Reviewed | 84.63 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 84.54 | |
| PF08235 | 157 | LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 | 83.45 | |
| TIGR01617 | 117 | arsC_related transcriptional regulator, Spx/MgsR f | 83.43 | |
| TIGR02742 | 130 | TrbC_Ftype type-F conjugative transfer system pili | 82.87 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 82.73 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 82.51 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 82.51 | |
| COG2179 | 175 | Predicted hydrolase of the HAD superfamily [Genera | 80.69 | |
| KOG4277|consensus | 468 | 80.22 | ||
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 80.1 |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=244.74 Aligned_cols=172 Identities=39% Similarity=0.722 Sum_probs=156.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+.+|+|++.++. .| +-+.+++|+++.|||+||+||++.++++|++|+..+++.|++|+++|++|||
T Consensus 2 ~~lIg~~aP~F~~~a~~--------~~-~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVig 72 (194)
T COG0450 2 MSLIGKKAPDFTANAVL--------GG-EIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIG 72 (194)
T ss_pred ccccCCcCCCcEEEEEe--------cC-ceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEE
Confidence 57799999999999541 33 1234999999989999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHH---cCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRE---NSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||.|+..++.+|++. ..+..+++||+++|+++++++.|||. ...|.+.|++|||||+|+|++..+++.+.++++++
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dE 152 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDE 152 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHH
Confidence 999999999999997 44455689999999999999999999 57788899999999999999999999999999999
Q ss_pred HHHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++.|+++|- ++.||+||.+|+++|
T Consensus 153 ilR~idAlq~~~~hg~vcPanW~~G~~~i 181 (194)
T COG0450 153 ILRVIDALQFVAKHGEVCPANWKPGDKTI 181 (194)
T ss_pred HHHHHHHHHHHHHhCCCccCCCCCCCccc
Confidence 9999999994 889999999999986
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=248.31 Aligned_cols=171 Identities=32% Similarity=0.604 Sum_probs=154.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|..+|.++|+|+.++.. +| .+.+++|++++||++||+||++.|||+|+.|++.|++++++|++.|+++++
T Consensus 1 ~~~~~~~~p~f~~~~~~--------~g--~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vig 70 (187)
T PRK10382 1 MSLINTKIKPFKNQAFK--------NG--EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYS 70 (187)
T ss_pred CCccCCcCCCcEEEEEe--------CC--cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 78899999999999643 23 337899999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
||.|+.+.+++|++......+++||+++|++.++++.||+. ...|.+.|++||||++|+|++.+.+..+..++.+++++
T Consensus 71 IS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~ 150 (187)
T PRK10382 71 VSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLR 150 (187)
T ss_pred EeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHH
Confidence 99999999999998753345889999999999999999997 44577789999999999999999877788889999999
Q ss_pred HHHhhcc-----CCccccCCCCCCCCC
Q psy2878 160 ILDAIQT-----GKLCACNRTLNGKTL 181 (181)
Q Consensus 160 ~l~~l~~-----~~~~~~~~~~~~~~~ 181 (181)
.|+++|. ++.||+||++|+.+|
T Consensus 151 ~l~alq~~~~~~g~~~p~~w~~~~~~~ 177 (187)
T PRK10382 151 KIKAAQYVASHPGEVCPAKWKEGEATL 177 (187)
T ss_pred HHHhhhhHhhcCCeEeCCCCCcCCcce
Confidence 9999994 688999999999875
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=247.54 Aligned_cols=167 Identities=26% Similarity=0.458 Sum_probs=150.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+.+|+|+++ +..| .++|++++||++||+||+++|||+|+.+++.|++++++|+++|+++++
T Consensus 1 ~~~vG~~aP~F~~~---------~~~g-----~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~ 66 (202)
T PRK13190 1 PVKLGQKAPDFTVN---------TTKG-----PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVG 66 (202)
T ss_pred CCCCCCCCCCcEEe---------cCCC-----cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 68899999999999 6666 589999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcc--cceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYK--LNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
||.|+.+.+.+|+++.....+ ++||+++|+++++++.||+. ...|.+.|++||||++|+|++.+.++...+++.+++
T Consensus 67 vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~el 146 (202)
T PRK13190 67 LSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEI 146 (202)
T ss_pred EeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHH
Confidence 999999999888875433233 68999999999999999997 455667899999999999999998888888999999
Q ss_pred HHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 158 LRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++|++++. +..||+||++|+++|
T Consensus 147 lr~l~~l~~~~~~~~~~p~~w~~g~~~~ 174 (202)
T PRK13190 147 IRITKALQVNWKRKVATPANWQPGQEGI 174 (202)
T ss_pred HHHHHHhhhHHhcCCCcCCCCCcCCcee
Confidence 999999985 789999999999985
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=242.32 Aligned_cols=173 Identities=30% Similarity=0.567 Sum_probs=148.4
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|..+|+.+|+|++++.. .+| +....++|+++ +||++||+||+++|||+|+.|++.|++++++|+++|++||
T Consensus 1 ~~~vg~~aPdF~~~~~~-------~~g-~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vi 72 (200)
T PRK15000 1 MVLVTRQAPDFTAAAVL-------GSG-EIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVV 72 (200)
T ss_pred CCcCCCcCCCCEeeccc-------CCC-ceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 56799999999999321 134 00124566666 7999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 80 GGSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+||.|+.+.+++|.+.... ..+++||+++|++.++++.||+. ...|.+.|++||||++|+|++.+.++.+.+++.+
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~ 152 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNID 152 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHH
Confidence 9999999999888764222 22469999999999999999998 5567788999999999999999988888999999
Q ss_pred HHHHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 156 ETLRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 156 ~ll~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++++|+++|. ++.||+||.+|+++|
T Consensus 153 eilr~l~al~~~~~~~~~~p~~w~~g~~~~ 182 (200)
T PRK15000 153 EMLRMVDALQFHEEHGDVCPAQWEKGKEGM 182 (200)
T ss_pred HHHHHHHHhhhHHhcCCCcCCCCCCCCcee
Confidence 99999999985 789999999999975
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=247.39 Aligned_cols=171 Identities=30% Similarity=0.609 Sum_probs=150.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+.+|+.+|+|++++. .+| ....++|+++ +||++||+||+++|||+|+.|++.|++++++|+++|++|+
T Consensus 67 ~~~vGd~aPdF~l~~~--------~~g--~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~Vi 136 (261)
T PTZ00137 67 SSLVGKLMPSFKGTAL--------LND--DLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVL 136 (261)
T ss_pred cccCCCCCCCCEeecc--------cCC--CceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 4679999999999831 233 1157999998 8899999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+||.|+++.+++|++...+ ..+++||+++|++.++++.||+....|.+.|++||||++|+|++.+.++.+.++++++
T Consensus 137 gIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~e 216 (261)
T PTZ00137 137 GVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDE 216 (261)
T ss_pred EEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 9999999899999874211 2478999999999999999999844567789999999999999999888888999999
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++++|+++| +++.||+||.+|+++|
T Consensus 217 iLr~l~alq~~~~~g~~cPanW~~g~~~~ 245 (261)
T PTZ00137 217 TLRLFDAVQFAEKTGNVCPVNWKQGDQAM 245 (261)
T ss_pred HHHHHHHhchhhhcCCCcCCCCCcCCcee
Confidence 999999999 4789999999999875
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=241.01 Aligned_cols=167 Identities=28% Similarity=0.473 Sum_probs=146.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeec-CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITE-SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l-~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+.+|+++|+|+++ +.+| + +.+ ++++||++||+||+++|||+|+.|++.|++++++|+++|++|+
T Consensus 6 ~~~iG~~aPdF~l~---------~~~G----~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~Vi 71 (215)
T PRK13191 6 IPLIGEKFPEMEVI---------TTHG----K-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELI 71 (215)
T ss_pred cccCCCcCCCCEee---------cCCC----C-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEE
Confidence 57799999999999 7788 6 455 5589999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCC--CcccceeEEEcCCchHHHHhCCC-CC-CCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 80 GGSSDNEFVKLAWRRENSN--LYKLNHWQFSDTNGSLIDQLGIR-HE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~gv~-~~-~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+||.|+...+++|.+.... ..+++||+++|+++++++.||++ .. .+.+.|++||||++|+|++++.++.+.+++++
T Consensus 72 gvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ 151 (215)
T PRK13191 72 GLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNID 151 (215)
T ss_pred EEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHH
Confidence 9999999999888763211 12688999999999999999998 22 24568999999999999999988888899999
Q ss_pred HHHHHHHhhcc----CCccccCCCC----CCCCC
Q psy2878 156 ETLRILDAIQT----GKLCACNRTL----NGKTL 181 (181)
Q Consensus 156 ~ll~~l~~l~~----~~~~~~~~~~----~~~~~ 181 (181)
+++++|+++|. ++.||+||++ |+++|
T Consensus 152 eilr~l~alq~~~~~~~~~P~~w~~~~~~g~~~~ 185 (215)
T PRK13191 152 EILRAIRALQLVDKAGVVTPANWPNNELIGDKVI 185 (215)
T ss_pred HHHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcee
Confidence 99999999984 7899999997 88875
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=239.37 Aligned_cols=168 Identities=31% Similarity=0.470 Sum_probs=149.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+.+|+|++. +.+| +...+++++||++||+||+++|||+|+.|++.|++++++|+++|+++||
T Consensus 1 ~~~~Gd~aPdF~l~---------t~~G----~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vig 67 (215)
T PRK13599 1 MKLLGEKFPSMEVV---------TTQG----VKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIG 67 (215)
T ss_pred CCCCCCCCCCCEeE---------CCCC----cEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 67899999999999 7888 8888899999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCC--CcccceeEEEcCCchHHHHhCCC-CCCC-cceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRENSN--LYKLNHWQFSDTNGSLIDQLGIR-HETG-VALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~gv~-~~~g-~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||.|+.+.+.+|.+.... ..+++||+++|+++++++.||+. ...+ .+.|++||||++|+|++++.++...+++.++
T Consensus 68 IS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~e 147 (215)
T PRK13599 68 LSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDE 147 (215)
T ss_pred EeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHH
Confidence 999999999988774322 23689999999999999999997 3223 2579999999999999999877788899999
Q ss_pred HHHHHHhhcc----CCccccCCCC----CCCCC
Q psy2878 157 TLRILDAIQT----GKLCACNRTL----NGKTL 181 (181)
Q Consensus 157 ll~~l~~l~~----~~~~~~~~~~----~~~~~ 181 (181)
++++|+++|. +..||+||.+ |++||
T Consensus 148 ilr~l~~lq~~~~~~~~~p~~w~~~~~~g~~~~ 180 (215)
T PRK13599 148 ILRALKALQTADQYGVALPEKWPNNYLIKDHVI 180 (215)
T ss_pred HHHHHHHhhhhhhcCCCcCCCCCCCCCCCCcEE
Confidence 9999999985 6799999999 88875
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=233.88 Aligned_cols=168 Identities=31% Similarity=0.638 Sum_probs=149.1
Q ss_pred CCccCccCCCcEEecccCCCCCCC-CCccccee--eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPE-ENNVSAFK--VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d-~~G~~~~~--~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~ 77 (181)
|..+|+.+|+|+++ + .+| + .+++++++||++||+||+++|||+|+.+++.|++++++|+++|++
T Consensus 1 ~~~~G~~aP~f~l~---------~~~~g----~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~ 67 (187)
T TIGR03137 1 MSLINTEIKPFKAT---------AYHNG----EFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVE 67 (187)
T ss_pred CCccCCcCCCcEee---------eccCC----ceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCc
Confidence 45689999999999 6 466 5 688899999999999999999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||+||.|+.+.+++|.+......+++|++++|++.++++.||++ ...|++.|++||||++|+|++.+.......++.++
T Consensus 68 vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ 147 (187)
T TIGR03137 68 VYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASE 147 (187)
T ss_pred EEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 99999999999999887643345789999999999999999998 44566789999999999999999866677789999
Q ss_pred HHHHHHhhcc-----CCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQT-----GKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~~-----~~~~~~~~~~~~~~~ 181 (181)
+++.|++++. ++.||++|.+|++++
T Consensus 148 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (187)
T TIGR03137 148 LLRKIKAAQYVAAHPGEVCPAKWKEGAETL 177 (187)
T ss_pred HHHHHHHhhhHHhcCCeeeCCCCCcCCccc
Confidence 9999998884 688999999999874
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=238.15 Aligned_cols=167 Identities=32% Similarity=0.513 Sum_probs=146.9
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCC-CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESS-FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+.+|+.+|+|+++ +.+| . +++++ ++||++||+||+++|||+|+.+++.|++++++|+++|++||
T Consensus 8 ~~~vG~~aPdF~~~---------~~~g----~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~Vi 73 (222)
T PRK13189 8 MPLIGDKFPEFEVK---------TTHG----P-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELI 73 (222)
T ss_pred cccCCCcCCCcEeE---------cCCC----C-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 57799999999999 6777 4 67776 49999999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCCC--cccceeEEEcCCchHHHHhCCC-CC-CCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNL--YKLNHWQFSDTNGSLIDQLGIR-HE-TGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~gv~-~~-~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+||.|+...+.+|.+..... .+++||+++|+++++++.||+. .. .+.+.|++||||++|+|++.+.++.+.+++.+
T Consensus 74 gvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ 153 (222)
T PRK13189 74 GLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMD 153 (222)
T ss_pred EEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHH
Confidence 99999999999998864221 2579999999999999999998 22 23467999999999999999988888889999
Q ss_pred HHHHHHHhhcc----CCccccCCCCCC----CCC
Q psy2878 156 ETLRILDAIQT----GKLCACNRTLNG----KTL 181 (181)
Q Consensus 156 ~ll~~l~~l~~----~~~~~~~~~~~~----~~~ 181 (181)
+++++|+++|. ++.||+||++|+ ++|
T Consensus 154 eilr~l~alq~~~~~~~~~p~~w~~g~~~~~~~~ 187 (222)
T PRK13189 154 EILRLVKALQTSDEKGVATPANWPPNDLIKDKVI 187 (222)
T ss_pred HHHHHHHHhhhHhhcCcCcCCCCCCCCCCCCcee
Confidence 99999999984 689999999999 764
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=234.45 Aligned_cols=171 Identities=39% Similarity=0.694 Sum_probs=149.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++.+.. .+.+| ++++|++++||++||+||++.||+.|+.++..|++++++|+++|++||+|
T Consensus 6 ~~~G~~aPdF~~~~~~-----~~~~~----~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~I 76 (199)
T PTZ00253 6 AKINHPAPSFEEVALM-----PNGSF----KKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLAC 76 (199)
T ss_pred cccCCcCCCCEeeccc-----cCCCC----cEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4689999999987321 14567 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
|.|+.+.+.+|...... ..+++||+++|++.++++.||++ ...|.+.|++||||++|+|++.+.+..+..++++++
T Consensus 77 S~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~ 156 (199)
T PTZ00253 77 SMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEV 156 (199)
T ss_pred eCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 99999888887653211 23589999999999999999998 555777899999999999999998777888999999
Q ss_pred HHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 158 LRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++|++++. +.+||+||++|+++|
T Consensus 157 l~~l~a~~~~~~~~~~cp~~w~~g~~~~ 184 (199)
T PTZ00253 157 LRLLEAFQFVEKHGEVCPANWKKGDPTM 184 (199)
T ss_pred HHHHHhhhhHHhcCCEeCCCCCcCCccc
Confidence 999999984 789999999999985
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=234.36 Aligned_cols=164 Identities=27% Similarity=0.467 Sum_probs=144.9
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
+|+.+|+|+++ +.+| . +++++++| |++||+||+++|||+|+.+++.|++++++|+++|++|++||
T Consensus 1 vG~~aP~F~~~---------~~~g----~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS 66 (203)
T cd03016 1 LGDTAPNFEAD---------TTHG----P-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLS 66 (203)
T ss_pred CcCCCCCeEEe---------cCCC----c-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 58999999999 7777 4 89999998 78999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCCC--cccceeEEEcCCchHHHHhCCC-CC--CCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 83 SDNEFVKLAWRRENSNL--YKLNHWQFSDTNGSLIDQLGIR-HE--TGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~gv~-~~--~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
.|+.+.+.+|.++.... .+++||+++|+++++++.||+. .. .+.+.|++||||++|+|++.+.++....++.+++
T Consensus 67 ~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~el 146 (203)
T cd03016 67 VDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEI 146 (203)
T ss_pred CCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence 99999999888752111 4789999999999999999998 32 2345789999999999999998888888899999
Q ss_pred HHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 158 LRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+++|+++|. +..||+||.+|+++|
T Consensus 147 l~~l~~lq~~~~~~~~~p~~w~~g~~~~ 174 (203)
T cd03016 147 LRVVDALQLTDKHKVATPANWKPGDDVI 174 (203)
T ss_pred HHHHHHHhhHhhcCcCcCCCCCCCCcee
Confidence 999999984 478999999999875
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=217.96 Aligned_cols=147 Identities=27% Similarity=0.500 Sum_probs=137.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+++|+|+++ +++| ++++|++++||++||+||+..++|.|..|+..|++.+++|++.|++|+|
T Consensus 3 ~l~~G~~aPdF~Lp---------~~~g----~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~G 69 (157)
T COG1225 3 MLKVGDKAPDFELP---------DQDG----ETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLG 69 (157)
T ss_pred cCCCCCcCCCeEee---------cCCC----CEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEE
Confidence 58899999999999 9999 9999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCC--C----cceeeEEEEcCCCcEEEEEeccCCCCCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HET--G----VALRATFIFDPQNIIQHITVNNLNVGRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~--g----~~~p~~~liD~~g~i~~~~~~~~~~~~~ 153 (181)
||.|+++.+++|++++ +++|++++|++.+++++||++ ... | .+.|++||||++|+|++.+ ....+..+
T Consensus 70 IS~Ds~~~~~~F~~k~----~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h 144 (157)
T COG1225 70 ISPDSPKSHKKFAEKH----GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGH 144 (157)
T ss_pred EeCCCHHHHHHHHHHh----CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCccc
Confidence 9999999999999998 999999999999999999998 222 1 3579999999999999999 57788899
Q ss_pred HHHHHHHHHhhc
Q psy2878 154 PIETLRILDAIQ 165 (181)
Q Consensus 154 ~~~ll~~l~~l~ 165 (181)
.++++++|+++.
T Consensus 145 ~~~vl~~l~~l~ 156 (157)
T COG1225 145 ADEVLAALKKLA 156 (157)
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=219.81 Aligned_cols=165 Identities=44% Similarity=0.778 Sum_probs=142.2
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|+.+|+|++++..| +.+| +.++|++++||++||+||+++|||.|+.+++.|++++++|++.|+.+++||.
T Consensus 1 vG~~aP~f~~~~~~g-----~~~~----~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~ 71 (173)
T cd03015 1 VGKKAPDFKATAVVP-----NGEF----KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVST 71 (173)
T ss_pred CCCcCCCCEeecccC-----CCCc----eEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 599999999994432 0234 7899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 84 DNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 84 d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
|+.+.+++|.+.... ..+++|++++|+++++++.||+. ...+++.|++||||++|+|+++++...+..++.+++++
T Consensus 72 d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~ 151 (173)
T cd03015 72 DSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLR 151 (173)
T ss_pred CCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHH
Confidence 998887788776421 23689999999999999999998 44466788999999999999999866666778899999
Q ss_pred HHHhhc----cCCccccCCCCC
Q psy2878 160 ILDAIQ----TGKLCACNRTLN 177 (181)
Q Consensus 160 ~l~~l~----~~~~~~~~~~~~ 177 (181)
.|+.++ +++.||++|++|
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~ 173 (173)
T cd03015 152 VLDALQFVEEHGEVCPANWKPG 173 (173)
T ss_pred HHHHhhhhhhcCCCcCCCCCCC
Confidence 998876 568999999997
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >KOG0852|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=197.42 Aligned_cols=171 Identities=37% Similarity=0.654 Sum_probs=154.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+..++|+|+...+ .+| .++.++|++|+||+++++||+..+.-+|+.++..+...+++|++.|.+|++
T Consensus 3 ~~~~~~p~p~fk~~aV--------VdG--~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig 72 (196)
T KOG0852|consen 3 MEVVFKPAPDFKGTAV--------VDG--EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLG 72 (196)
T ss_pred ccccCCCCCCcceeEE--------EcC--cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEE
Confidence 3556778899998864 455 568999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHc---CCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRREN---SNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+|.|+...+.+|+..- .+...+++|+++|.+.++++.|||+ ...|.+.+..||||++|.++.+.++..++++..++
T Consensus 73 ~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE 152 (196)
T KOG0852|consen 73 ISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDE 152 (196)
T ss_pred EeccchhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHH
Confidence 9999999999999843 3344667999999999999999999 88899999999999999999999989999999999
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+++.+++.| +++-||++|+||.++|
T Consensus 153 ~lRLvqAfQ~td~~geVcPagW~pgs~ti 181 (196)
T KOG0852|consen 153 TLRLVQAFQFTDEHGEVCPAGWKPGSDTI 181 (196)
T ss_pred HHHHHHHHhhhhccCccccCCCCCCCccc
Confidence 999999998 5678999999999986
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=190.98 Aligned_cols=144 Identities=22% Similarity=0.365 Sum_probs=126.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+++|+|+++ |.+| +.++|++++||++||+||++.|||+|+.+++.|+++++++. +++|++
T Consensus 17 ~~~~G~~~P~f~l~---------~~~g----~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~ 81 (167)
T PRK00522 17 LPQVGDKAPDFTLV---------ANDL----SDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLC 81 (167)
T ss_pred CCCCCCCCCCeEEE---------cCCC----cEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEE
Confidence 46789999999999 8899 99999999999999999977669999999999999999983 899999
Q ss_pred EecCCHHHHHHHHHHcCCCcccc-eeEEEcC-CchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEec-cCCCCCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLN-HWQFSDT-NGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITVN-NLNVGRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~-~~~~~D~-~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~~-~~~~~~~ 153 (181)
||.|++..+++|++++ +++ +++++|. ++.+++.||+. .. .|++.|++||||++|+|++.++. ......+
T Consensus 82 vs~D~~~~~~~f~~~~----~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~ 157 (167)
T PRK00522 82 ISADLPFAQKRFCGAE----GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPD 157 (167)
T ss_pred EeCCCHHHHHHHHHhC----CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCC
Confidence 9999999999999987 776 7999994 56999999997 32 57778899999999999999973 4456678
Q ss_pred HHHHHHHHHh
Q psy2878 154 PIETLRILDA 163 (181)
Q Consensus 154 ~~~ll~~l~~ 163 (181)
+++++++|++
T Consensus 158 ~~~~l~~l~~ 167 (167)
T PRK00522 158 YDAALAALKA 167 (167)
T ss_pred HHHHHHHhhC
Confidence 9999998863
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=187.48 Aligned_cols=144 Identities=29% Similarity=0.429 Sum_probs=128.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|.+|+.+|+|++. +.+| +.+++++++| |++||+||+++||+.|+.+++.|+++++++++.++++++
T Consensus 1 ~~~G~~~p~~~l~---------~~~g----~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~ 67 (149)
T cd03018 1 LEVGDKAPDFELP---------DQNG----QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLG 67 (149)
T ss_pred CCCCCcCCCcEec---------CCCC----CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5789999999999 8899 9999999999 999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCC--chHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTN--GSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
||.|+++.+++|++++ +++|++++|.+ .++++.||+. ...+++.|++||||++|+|++.+.+......+..++
T Consensus 68 vs~d~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~ 143 (149)
T cd03018 68 ISVDSPFSLRAWAEEN----GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDY 143 (149)
T ss_pred ecCCCHHHHHHHHHhc----CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhH
Confidence 9999999999999987 89999999987 9999999998 333667789999999999999997655445666666
Q ss_pred HHHHH
Q psy2878 158 LRILD 162 (181)
Q Consensus 158 l~~l~ 162 (181)
.+.|+
T Consensus 144 ~~~~~ 148 (149)
T cd03018 144 DEALD 148 (149)
T ss_pred HHHhh
Confidence 66654
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=183.82 Aligned_cols=138 Identities=21% Similarity=0.365 Sum_probs=121.9
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
++|+.+|+|+++ |.+| ++++|++++||++||+||++.|||+|+.+++.|++++++++ |+.+|+||
T Consensus 1 ~~G~~aP~f~l~---------~~~g----~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is 65 (143)
T cd03014 1 KVGDKAPDFTLV---------TSDL----SEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTIS 65 (143)
T ss_pred CCCCCCCCcEEE---------CCCC----cEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEE
Confidence 479999999999 8999 99999999999999999988889999999999999999984 89999999
Q ss_pred cCCHHHHHHHHHHcCCCccc-ceeEEEcCC-chHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEec-cCCCCCCHHHHH
Q psy2878 83 SDNEFVKLAWRRENSNLYKL-NHWQFSDTN-GSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVN-NLNVGRNPIETL 158 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~~~-~~~~~~D~~-~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~-~~~~~~~~~~ll 158 (181)
.|+.+.+++|.+++ +. +|++++|+. .++++.||++ +..+.+.|++||||++|+|++.+++ ......++++++
T Consensus 66 ~d~~~~~~~~~~~~----~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 66 ADLPFAQKRWCGAE----GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred CCCHHHHHHHHHhc----CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 99999999999987 54 799999996 9999999998 5556668999999999999999974 334456777776
Q ss_pred H
Q psy2878 159 R 159 (181)
Q Consensus 159 ~ 159 (181)
+
T Consensus 142 ~ 142 (143)
T cd03014 142 A 142 (143)
T ss_pred h
Confidence 4
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=184.56 Aligned_cols=144 Identities=19% Similarity=0.374 Sum_probs=126.4
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+.+|+|+++ |.+| +.+++++++||++||+||++.|||.|+.+++.|+++++++.+.|+++|+|
T Consensus 4 ~~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~I 70 (154)
T PRK09437 4 LKAGDIAPKFSLP---------DQDG----EQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGI 70 (154)
T ss_pred CCCCCcCCCcEee---------CCCC----CEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6789999999999 8999 99999999999999999988899999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC--CCc----ceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE--TGV----ALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~--~g~----~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
|.|+.+.+++|++++ +++|++++|+++.+++.||+. .. .+. ..|++||||++|+|++.+. +..+..+.
T Consensus 71 s~d~~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~-g~~~~~~~ 145 (154)
T PRK09437 71 STDKPEKLSRFAEKE----LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD-KFKTSNHH 145 (154)
T ss_pred cCCCHHHHHHHHHHh----CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc-CCCcchhH
Confidence 999999999999987 889999999999999999987 21 111 2378999999999999995 34445567
Q ss_pred HHHHHHHHh
Q psy2878 155 IETLRILDA 163 (181)
Q Consensus 155 ~~ll~~l~~ 163 (181)
+++++++++
T Consensus 146 ~~~~~~~~~ 154 (154)
T PRK09437 146 DVVLDYLKE 154 (154)
T ss_pred HHHHHHHhC
Confidence 778777653
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=177.43 Aligned_cols=123 Identities=25% Similarity=0.493 Sum_probs=115.1
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|+++|+|+++ +.+| +.++|++++||++||+||.+.|||.|..+++.|+++++++++.|+++++|+.
T Consensus 1 vG~~~P~f~l~---------~~~g----~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~ 67 (124)
T PF00578_consen 1 VGDKAPDFTLT---------DSDG----KTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIST 67 (124)
T ss_dssp TTSBGGCEEEE---------TTTS----EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES
T ss_pred CcCCCCCcEeE---------CCCC----CEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccc
Confidence 69999999999 8999 9999999999999999997779999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEE
Q psy2878 84 DNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~ 143 (181)
|+.+.+++|.+++ +++|++++|++.++++.|++. .......|++||||++|+|+|+
T Consensus 68 d~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 68 DDPEEIKQFLEEY----GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp SSHHHHHHHHHHH----TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred ccccchhhhhhhh----ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 9999999999998 899999999999999999998 3334467899999999999985
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >KOG0854|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=180.70 Aligned_cols=166 Identities=26% Similarity=0.425 Sum_probs=144.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|..|+.+|+|...+..| .+.+-|+.| .|.||+.+++.++|+|.+|+.++.++..||.++|+.+|+
T Consensus 6 l~lgd~~PNfea~Tt~g--------------~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlia 71 (224)
T KOG0854|consen 6 LRLGDTVPNFEADTTVG--------------KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIA 71 (224)
T ss_pred ccccCcCCCcccccccc--------------ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEE
Confidence 56899999999985444 455556555 699999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcC---CCc--ccceeEEEcCCchHHHHhCCCCC-------CCcceeeEEEEcCCCcEEEEEeccC
Q psy2878 81 GSSDNEFVKLAWRRENS---NLY--KLNHWQFSDTNGSLIDQLGIRHE-------TGVALRATFIFDPQNIIQHITVNNL 148 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~---~~~--~~~~~~~~D~~~~~~~~~gv~~~-------~g~~~p~~~liD~~g~i~~~~~~~~ 148 (181)
.|.|+.++++.|++... ... .++||++.|++.+++-.|+|.+. .|...++.||||++.+|+.++.|+.
T Consensus 72 lS~d~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ 151 (224)
T KOG0854|consen 72 LSVDDVESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPS 151 (224)
T ss_pred eehhhHHHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEccc
Confidence 99999999999998642 122 38999999999999999999821 2344789999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 149 NVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 149 ~~~~~~~~ll~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
..+++.+++++.|.+||- +.+||+||+||++|+
T Consensus 152 ttGRN~dEiLRvidsLqlt~~k~VaTP~nWkpg~~vm 188 (224)
T KOG0854|consen 152 TTGRNFDEILRVIDSLQLTDKKGVATPVNWKPGDKVM 188 (224)
T ss_pred ccCcCHHHHHHHHHHHhhhcccccccccccCCCCceE
Confidence 999999999999999983 468999999999874
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-29 Score=176.52 Aligned_cols=135 Identities=24% Similarity=0.398 Sum_probs=120.2
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+++|+|+++ |.+| +.+++++++||++||+||+++|||.|+.+++.|+++++++++.++++|+|+.|+
T Consensus 1 ~~~p~f~l~---------~~~g----~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~ 67 (140)
T cd03017 1 DKAPDFTLP---------DQDG----ETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS 67 (140)
T ss_pred CCCCCcccc---------CCCC----CEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999998 8999 999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCC----CCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 86 EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE----TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~----~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
++.+++|++++ +++|++++|++..+++.||+... .+.+.|++||||++|+|++++. +..+.+++++++
T Consensus 68 ~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~-g~~~~~~~~~~~ 139 (140)
T cd03017 68 VESHAKFAEKY----GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWR-KVKPKGHAEEVL 139 (140)
T ss_pred HHHHHHHHHHh----CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEe-cCCccchHHHHh
Confidence 99999999987 88999999999999999998811 2234589999999999999995 445667777765
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=178.78 Aligned_cols=129 Identities=21% Similarity=0.352 Sum_probs=115.7
Q ss_pred cCccCCCcEEecccCCCCCCCCC---cccceeeeecCC-CCCCeEEEEEeeCCCCCCChhH-HHHHHHHHHHHHhcCc-E
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEEN---NVSAFKVITESS-FPGKWKIFYFYPKDFTFVCPTE-ISEYNKLVKDFNERNA-I 77 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~---G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~~~-~~~l~~l~~~~~~~~~-~ 77 (181)
+|+.+|+|+++ +.+ | ++++|++ ++||++||+||++.|||.|+.| ++.|++.+++|++.|+ .
T Consensus 1 vG~~aPdF~l~---------~~~~~~g----~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~ 67 (155)
T cd03013 1 VGDKLPNVTLF---------EYVPGPP----NPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDE 67 (155)
T ss_pred CCCcCCCeEee---------eeccCCC----ceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCE
Confidence 59999999999 664 7 8999999 5999999999999999999999 9999999999999999 6
Q ss_pred EEEEecCCHHHHHHHHHHcCCCccc--ceeEEEcCCchHHHHhCCC-CCC--Cc---ceeeEEEEcCCCcEEEEEeccCC
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKL--NHWQFSDTNGSLIDQLGIR-HET--GV---ALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~-~~~--g~---~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
|++||.|+++.+++|++++ ++ +|++++|++.++++.||++ ... |. +.|++|||| +|+|++.++...+
T Consensus 68 V~~iS~D~~~~~~~~~~~~----~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 68 VICVSVNDPFVMKAWGKAL----GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred EEEEECCCHHHHHHHHHhh----CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 9999999999999999997 65 8999999999999999998 332 32 579999999 7999999985544
Q ss_pred C
Q psy2878 150 V 150 (181)
Q Consensus 150 ~ 150 (181)
.
T Consensus 143 ~ 143 (155)
T cd03013 143 G 143 (155)
T ss_pred C
Confidence 3
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=177.10 Aligned_cols=132 Identities=20% Similarity=0.377 Sum_probs=113.8
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
++|+++|+|++++. +.+| +++++++++||++||+||.+.|||+|..+++.|+++++++++.++.+++|+
T Consensus 1 k~G~~~P~~~~~~~-------~~~g----~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~ 69 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-------DLDG----KPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVS 69 (146)
T ss_dssp STTSB--CCEEEEE-------ETTS----EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCeEEEee-------cCCC----CEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEec
Confidence 58999999999611 4899 999999999999999999555999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC--C--CCCcceeeEEEEcCCCcEEEEEeccCC
Q psy2878 83 SDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR--H--ETGVALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~--~--~~g~~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
.++.....+|++++ +.+|+++.|++..++++|++. . ..+...|++||||++|+|++++.+...
T Consensus 70 ~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 70 SDDDPPVREFLKKY----GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ESSSHHHHHHHHHT----TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccCCHHHHHHHHhh----CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 98877799999987 999999999999999999975 1 123367899999999999999974433
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=175.93 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=126.0
Q ss_pred CccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 5 GQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 5 G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
|+.+|+|++. +.+| ++++++++ +||++||+|| ++|||.|..+++.|++++++|++.++.+++|+.
T Consensus 1 g~~~p~f~l~---------~~~g----~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~ 66 (171)
T cd02969 1 GSPAPDFSLP---------DTDG----KTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINS 66 (171)
T ss_pred CCcCCCcccc---------CCCC----CEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEec
Confidence 6789999999 8999 99999998 8899999998 889999999999999999999988999999998
Q ss_pred CC--------HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC-----
Q psy2878 84 DN--------EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV----- 150 (181)
Q Consensus 84 d~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~----- 150 (181)
|+ .+..++|++++ +++|+++.|++..+++.||+. ..|++||||++|+|++....+...
T Consensus 67 d~~~~~~~d~~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~~v~-----~~P~~~lid~~G~v~~~~~~~~~~~~~~~ 137 (171)
T cd02969 67 NDIEAYPEDSPENMKAKAKEH----GYPFPYLLDETQEVAKAYGAA-----CTPDFFLFDPDGKLVYRGRIDDSRPGNDP 137 (171)
T ss_pred CccccccccCHHHHHHHHHHC----CCCceEEECCchHHHHHcCCC-----cCCcEEEECCCCeEEEeecccCCcccccc
Confidence 65 56778888877 889999999999999999987 568999999999999887433221
Q ss_pred CCCHHHHHHHHHhhccC----------CccccCC
Q psy2878 151 GRNPIETLRILDAIQTG----------KLCACNR 174 (181)
Q Consensus 151 ~~~~~~ll~~l~~l~~~----------~~~~~~~ 174 (181)
....+++.++|+++.++ -+|++.|
T Consensus 138 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 138 PVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred cccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 23567888888887754 3788877
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=167.02 Aligned_cols=127 Identities=35% Similarity=0.650 Sum_probs=113.5
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
.+|+|++. |.+| +++++++++||++||+||++.||+.|..+++.|++++++|++.++++|+|+.|++
T Consensus 1 ~~p~f~l~---------~~~g----~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 1 KAPDFTLP---------ATDG----GEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred CCCCceec---------cCCC----cEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 47899998 8999 9999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCC---CcceeeEEEEcCCCcEEEEEeccCC
Q psy2878 87 FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HET---GVALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~---g~~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
+.+++|++++ .+.+|++++|++..+++.||+. ... +...|++||||++|+|++++.+...
T Consensus 68 ~~~~~~~~~~---~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 68 FSHKAWAEKE---GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHHHHHHhcc---cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 9999998875 3778999999999999999998 221 3457899999999999999975444
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=164.27 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=109.3
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCC-CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFP-GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~-gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+|+|+++ |.+| ++++++++. +|++||+||+++|||.|+.+++.|+++++++.+.|+.+|+|+.|+
T Consensus 1 ~~p~f~l~---------~~~g----~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 1 TAPDFELP---------DAGG----ETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCCCcccc---------CCCC----CEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 47899998 8999 999999985 578999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC-----------------------CCcceeeEEEEcCCCcEE
Q psy2878 86 EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE-----------------------TGVALRATFIFDPQNIIQ 141 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~-----------------------~g~~~p~~~liD~~g~i~ 141 (181)
.+.+.+|.+++ +++|++++|++..+++.||+. .. .+...|++||||++|+|+
T Consensus 68 ~~~~~~~~~~~----~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~ 143 (149)
T cd02970 68 PEKLEAFDKGK----FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTIL 143 (149)
T ss_pred HHHHHHHHHhc----CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEE
Confidence 88888888877 899999999999999999995 11 124689999999999999
Q ss_pred EEEe
Q psy2878 142 HITV 145 (181)
Q Consensus 142 ~~~~ 145 (181)
+.+.
T Consensus 144 ~~~~ 147 (149)
T cd02970 144 FAHV 147 (149)
T ss_pred EEec
Confidence 9985
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=167.86 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=109.5
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
..|..+|+|+++ |.+| +.++|++++||++||+|| ++|||+|+.++|.|++++++++++|++||+|+
T Consensus 14 ~~~~~~pdf~l~---------d~~G----~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 14 ELRKSIYDYTVK---------TLEG----TTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred hcCCCCCceEEE---------CCCC----CEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 467889999999 8999 999999999999888887 89999999999999999999999999999999
Q ss_pred c--------CCHHHHHHHHHHcCCCcccceeEEEcC------CchHHHH--------hCCC-CCCCcc-eeeEEEEcCCC
Q psy2878 83 S--------DNEFVKLAWRRENSNLYKLNHWQFSDT------NGSLIDQ--------LGIR-HETGVA-LRATFIFDPQN 138 (181)
Q Consensus 83 ~--------d~~~~~~~~~~~~~~~~~~~~~~~~D~------~~~~~~~--------~gv~-~~~g~~-~p~~~liD~~g 138 (181)
. ++.+.+++|++++ +++||+++|. ...+.+. |+.. ...+++ .+++||||++|
T Consensus 80 ~~~~~~~e~d~~e~~~~f~~~~----~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G 155 (199)
T PTZ00056 80 TSQFLNQEFPNTKDIRKFNDKN----KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSG 155 (199)
T ss_pred chhccCCCCCCHHHHHHHHHHc----CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCC
Confidence 6 5678899999987 8999999862 2233322 2221 111222 24799999999
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 139 IIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 139 ~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+|++++.+. ...+++.+.|+++.
T Consensus 156 ~iv~~~~g~----~~~~~l~~~I~~ll 178 (199)
T PTZ00056 156 NVVAYFSPR----TEPLELEKKIAELL 178 (199)
T ss_pred cEEEEeCCC----CCHHHHHHHHHHHH
Confidence 999988432 23345566665554
|
|
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=165.52 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=103.8
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
.++.+|+|+++ |.+| ++++|++++||++||+|++++|||+|+.++|.|++++++|+++|+.||+||.
T Consensus 16 ~~~~~p~f~l~---------d~~G----~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 16 PTKSFFEFEAI---------DIDG----QLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCcccceEeE---------cCCC----CEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 46788999999 8999 9999999999976554445999999999999999999999999999999996
Q ss_pred C--------CHHHHHHHHH-HcCCCcccceeEEEc--CCchH-HHHhCCC------------CCCCcc-eeeEEEEcCCC
Q psy2878 84 D--------NEFVKLAWRR-ENSNLYKLNHWQFSD--TNGSL-IDQLGIR------------HETGVA-LRATFIFDPQN 138 (181)
Q Consensus 84 d--------~~~~~~~~~~-~~~~~~~~~~~~~~D--~~~~~-~~~~gv~------------~~~g~~-~p~~~liD~~g 138 (181)
| +.+...+|.. ++ +++||+++| .++.. ++.|++. ...+++ ++++||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~f~~~~~----~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G 158 (183)
T PTZ00256 83 NQFMEQEPWDEPEIKEYVQKKF----NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQG 158 (183)
T ss_pred ccccccCCCCHHHHHHHHHHhc----CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCC
Confidence 4 2466777765 55 899999965 45433 3444221 011333 33689999999
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 139 IIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 139 ~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+|++++.+.. +.+++.+.|+++
T Consensus 159 ~Iv~~~~g~~----~~~~l~~~I~~l 180 (183)
T PTZ00256 159 KVVKYFSPKV----NPNEMIQDIEKL 180 (183)
T ss_pred CEEEEECCCC----CHHHHHHHHHHH
Confidence 9999996432 333445555443
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-25 Score=168.47 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=111.7
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
.+|+.+|+|+++ |.+| +.++|++++||++||+|| ++||+.|..+++.|++++++++++|++||+|+
T Consensus 74 ~~g~~aPdF~l~---------d~~G----~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 74 ATEKSVHDFTVK---------DIDG----KDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred hcCCCCCceEEE---------CCCC----CEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 378999999999 9999 999999999999999999 99999999999999999999999999999999
Q ss_pred cC--------CHHHHHHHH-HHcCCCcccceeEEEc--CCc-hHHHHhCCC-C-CCC------cceeeEEEEcCCCcEEE
Q psy2878 83 SD--------NEFVKLAWR-RENSNLYKLNHWQFSD--TNG-SLIDQLGIR-H-ETG------VALRATFIFDPQNIIQH 142 (181)
Q Consensus 83 ~d--------~~~~~~~~~-~~~~~~~~~~~~~~~D--~~~-~~~~~~gv~-~-~~g------~~~p~~~liD~~g~i~~ 142 (181)
.| +.+++++|+ +++ +++||++.| .++ .++..|++. . ..+ ...|++||||++|+|++
T Consensus 140 ~d~~~~~e~~s~~ei~~f~~~~~----g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~ 215 (236)
T PLN02399 140 CNQFGGQEPGSNPEIKQFACTRF----KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE 215 (236)
T ss_pred cccccccCCCCHHHHHHHHHHhc----CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE
Confidence 63 456788887 465 899999864 444 455566532 0 001 12589999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHhhc
Q psy2878 143 ITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 143 ~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++.+.. +.+++.+.|+++.
T Consensus 216 ~~~G~~----~~~~le~~I~~lL 234 (236)
T PLN02399 216 RYPPTT----SPFQIEKDIQKLL 234 (236)
T ss_pred EECCCC----CHHHHHHHHHHHh
Confidence 995332 3456666666553
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=162.31 Aligned_cols=138 Identities=11% Similarity=0.091 Sum_probs=107.7
Q ss_pred CccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 5 GQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 5 G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
-..+|+|+++ |.+| +.++|++++||++||+|| ++||+.|+.+++.|++++++|++.|+.|++|+.|
T Consensus 6 ~~~~pdf~l~---------d~~G----~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 6 PKSIYDFTVK---------DIGG----NDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCCCceEEE---------CCCC----CEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3678999999 8999 999999999999999999 8999999999999999999999999999999974
Q ss_pred --------CHHHH-HHHHHHcCCCcccceeEEEc--CC-chHHHHhCCC-CC------CCc-ceeeEEEEcCCCcEEEEE
Q psy2878 85 --------NEFVK-LAWRRENSNLYKLNHWQFSD--TN-GSLIDQLGIR-HE------TGV-ALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 85 --------~~~~~-~~~~~~~~~~~~~~~~~~~D--~~-~~~~~~~gv~-~~------~g~-~~p~~~liD~~g~i~~~~ 144 (181)
+.+.. +.|++++ +++||++.| ++ ...++.|++. .. .++ ..|++||||++|+|++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~----~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 72 QFLGQEPGSNEEIQQTVCTRF----KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred ccccCCCCCHHHHHHHHHHcc----CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 33344 4445665 899999974 55 3777777643 11 012 258999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHhh
Q psy2878 145 VNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 145 ~~~~~~~~~~~~ll~~l~~l 164 (181)
.+.. +.+++.+.|+++
T Consensus 148 ~g~~----~~~~l~~~i~~~ 163 (167)
T PLN02412 148 APTT----SPLKIEKDIQNL 163 (167)
T ss_pred CCCC----CHHHHHHHHHHH
Confidence 6332 334555555544
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=160.66 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=98.6
Q ss_pred CCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC---
Q psy2878 8 LSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--- 84 (181)
Q Consensus 8 ~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--- 84 (181)
+|+|++. |.+| ++++|++++||++||+|| ++||| |+.+++.|++++++|+++|+.+++|+.+
T Consensus 2 ~~~f~l~---------d~~G----~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~ 66 (152)
T cd00340 2 IYDFSVK---------DIDG----EPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFG 66 (152)
T ss_pred cceeEEE---------CCCC----CEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccc
Confidence 6889998 9999 999999999999999998 99999 9999999999999999999999999864
Q ss_pred -----CHHHHHHHHHH-cCCCcccceeEEEcC--Cch-HHHHhCCC--CCCC------cceeeEEEEcCCCcEEEEEec
Q psy2878 85 -----NEFVKLAWRRE-NSNLYKLNHWQFSDT--NGS-LIDQLGIR--HETG------VALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 85 -----~~~~~~~~~~~-~~~~~~~~~~~~~D~--~~~-~~~~~gv~--~~~g------~~~p~~~liD~~g~i~~~~~~ 146 (181)
+.+.+++|+++ + +++||++.|. ++. .++.|++. ...+ ...|++||||++|+|++++.+
T Consensus 67 ~~~~~~~~~~~~f~~~~~----~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 67 GQEPGSNEEIKEFCETNY----GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred cCCCCCHHHHHHHHHHhc----CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 36788999986 6 8899999874 333 45566532 0000 124489999999999999964
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=163.12 Aligned_cols=134 Identities=9% Similarity=0.102 Sum_probs=111.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecC--CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITES--SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~--~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
+.+|+.+|+|+++ |.+| +.++++ +++||+++|+|| ++|||+|+.++|.+++++++ .+++++
T Consensus 46 ~~vG~~aP~f~l~---------d~~G----~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv 108 (189)
T TIGR02661 46 PDVGDAAPIFNLP---------DFDG----EPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVV 108 (189)
T ss_pred CCCCCcCCCcEec---------CCCC----CEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEE
Confidence 4789999999999 8999 999995 579999999998 99999999999999998754 478899
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
+||.++++++++|++++ +++++.+. .+.++++.|++. ..|++||||++|+|+++. ..+..++++++++
T Consensus 109 ~Is~~~~~~~~~~~~~~----~~~~~~~~-~~~~i~~~y~v~-----~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~ 176 (189)
T TIGR02661 109 MISDGTPAEHRRFLKDH----ELGGERYV-VSAEIGMAFQVG-----KIPYGVLLDQDGKIRAKG--LTNTREHLESLLE 176 (189)
T ss_pred EEeCCCHHHHHHHHHhc----CCCcceee-chhHHHHhccCC-----ccceEEEECCCCeEEEcc--CCCCHHHHHHHHH
Confidence 99999999999999987 77776544 468999999986 568999999999999875 3344456677776
Q ss_pred HHHhh
Q psy2878 160 ILDAI 164 (181)
Q Consensus 160 ~l~~l 164 (181)
++++.
T Consensus 177 ~l~~~ 181 (189)
T TIGR02661 177 ADREG 181 (189)
T ss_pred HHHcC
Confidence 66543
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-25 Score=154.39 Aligned_cols=105 Identities=13% Similarity=0.208 Sum_probs=96.4
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec------CCHHHHHHHHHHcCCCccccee
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS------DNEFVKLAWRRENSNLYKLNHW 105 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~------d~~~~~~~~~~~~~~~~~~~~~ 105 (181)
+++++++++||++||+|| ++||+.|+.+++.|+++++++++.++.+|+|+. ++.+.+++|++++ +++|+
T Consensus 14 ~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~----~~~~p 88 (126)
T cd03012 14 KPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY----GITYP 88 (126)
T ss_pred CccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc----CCCCC
Confidence 689999999999999998 889999999999999999999999999999986 4577888899987 99999
Q ss_pred EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 106 QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 106 ~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
++.|++..+++.|++. ..|++||||++|+|++++.+
T Consensus 89 ~~~D~~~~~~~~~~v~-----~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 89 VANDNDYATWRAYGNQ-----YWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred EEECCchHHHHHhCCC-----cCCeEEEECCCCcEEEEEec
Confidence 9999999999999986 56899999999999999964
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=157.85 Aligned_cols=128 Identities=9% Similarity=0.067 Sum_probs=99.7
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--------CCHHHHHHHHHH
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--------DNEFVKLAWRRE 95 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--------d~~~~~~~~~~~ 95 (181)
|.+| ++++|++++||++||+|| ++|||+|..+++.|++++++|++.|+.+++|+. |+.+.+++|+++
T Consensus 9 ~~~G----~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~ 83 (153)
T TIGR02540 9 DARG----RTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARR 83 (153)
T ss_pred CCCC----CEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence 9999 999999999999888887 999999999999999999999999999999994 667889999975
Q ss_pred -cCCCcccceeEEEcC---CchHHH--HhCCCCCCCcc--eeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 96 -NSNLYKLNHWQFSDT---NGSLID--QLGIRHETGVA--LRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 96 -~~~~~~~~~~~~~D~---~~~~~~--~~gv~~~~g~~--~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+ +++||+++|. +..... .|.+....+.| .+++||||++|+|++.+.+. ...+++.+.|+++
T Consensus 84 ~~----~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~----~~~~~l~~~i~~l 152 (153)
T TIGR02540 84 NY----GVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPE----EPVEEIRPEITAL 152 (153)
T ss_pred hc----CCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCC----CCHHHHHHHHHHh
Confidence 6 8999999872 233333 33322111222 23499999999999999543 2446677766654
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=157.70 Aligned_cols=136 Identities=18% Similarity=0.301 Sum_probs=118.0
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|..+|+|++. +.+| +.+++++++||+++|+|| ++||+.|+.+++.|+++++++.+.++++++|
T Consensus 35 ~~~g~~~p~~~~~---------~~~g----~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i 100 (173)
T PRK03147 35 VQVGKEAPNFVLT---------DLEG----KKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAV 100 (173)
T ss_pred cCCCCCCCCcEee---------cCCC----CEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 5689999999999 8999 999999999999999998 8899999999999999999999989999999
Q ss_pred ecCC-HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 82 SSDN-EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 82 s~d~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
+.|. .+..++|.+++ +++|+++.|.+.++.+.||+. ..|++|+||++|+|++.+.+. . ..+++.+.
T Consensus 101 ~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~g~i~~~~~g~-~---~~~~l~~~ 167 (173)
T PRK03147 101 NVDETELAVKNFVNRY----GLTFPVAIDKGRQVIDAYGVG-----PLPTTFLIDKDGKVVKVITGE-M---TEEQLEEY 167 (173)
T ss_pred EcCCCHHHHHHHHHHh----CCCceEEECCcchHHHHcCCC-----CcCeEEEECCCCcEEEEEeCC-C---CHHHHHHH
Confidence 9875 56778888887 899999999999999999987 678999999999999888432 2 34555555
Q ss_pred HHhh
Q psy2878 161 LDAI 164 (181)
Q Consensus 161 l~~l 164 (181)
++++
T Consensus 168 l~~~ 171 (173)
T PRK03147 168 LEKI 171 (173)
T ss_pred HHHh
Confidence 5544
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=161.09 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=100.2
Q ss_pred ccCccCCCcEEecccCCCCCCCCC--cccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEEN--NVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~--G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
.+|+++|+|+++ |.+ | +.++++++ +||++||+|| ++||++|+.++|.|.++. +++++|+
T Consensus 40 ~~g~~~p~f~l~---------~~~g~g----~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi 101 (185)
T PRK15412 40 LIGKPVPKFRLE---------SLENPG----QFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVV 101 (185)
T ss_pred hcCCCCCCcCCc---------cCCCCC----ccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEE
Confidence 468899999998 655 5 66777665 7999999999 899999999999998764 3589999
Q ss_pred EEecC-CHHHHHHHHHHcCCCcccceeE-EEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEecc
Q psy2878 80 GGSSD-NEFVKLAWRRENSNLYKLNHWQ-FSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 80 ~Is~d-~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
+|+.+ +.+.+++|++++ +.+|++ +.|+++.+++.||+. ..|++||||++|+|++++.+.
T Consensus 102 ~v~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~gv~-----~~P~t~vid~~G~i~~~~~G~ 162 (185)
T PRK15412 102 GMNYKDDRQKAISWLKEL----GNPYALSLFDGDGMLGLDLGVY-----GAPETFLIDGNGIIRYRHAGD 162 (185)
T ss_pred EEECCCCHHHHHHHHHHc----CCCCceEEEcCCccHHHhcCCC-----cCCeEEEECCCceEEEEEecC
Confidence 99974 567788899987 888884 789999999999987 568999999999999999643
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=155.19 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=104.0
Q ss_pred ccCccCCCcEEecccCCCCCCCCCccccee--eeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFK--VITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~--~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
.+|+++|+|+++ |.+| + +++++++ +||+++|+|| ++|||+|+.+++.+++++ +.+++++
T Consensus 35 ~vG~~ap~f~l~---------~~~G----~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~----~~~~~vi 96 (173)
T TIGR00385 35 LIGKPVPAFPLA---------ALRE----PLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELA----KDGLPIV 96 (173)
T ss_pred hcCCCCCCcccc---------ccCC----CCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHH----HcCCEEE
Confidence 478999999999 7787 6 4555665 6899999999 899999999999987765 3579999
Q ss_pred EEecC-CHHHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 80 GGSSD-NEFVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 80 ~Is~d-~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
+|+.+ ..+...+|++++ +++|+ ++.|+++++++.|++. ..|++|+||++|+|++++.+. .+.+++
T Consensus 97 ~V~~~~~~~~~~~~~~~~----~~~f~~v~~D~~~~~~~~~~v~-----~~P~~~~id~~G~i~~~~~G~----~~~~~l 163 (173)
T TIGR00385 97 GVDYKDQSQNALKFLKEL----GNPYQAILIDPNGKLGLDLGVY-----GAPETFLVDGNGVILYRHAGP----LNNEVW 163 (173)
T ss_pred EEECCCChHHHHHHHHHc----CCCCceEEECCCCchHHhcCCe-----eCCeEEEEcCCceEEEEEecc----CCHHHH
Confidence 99975 456667888887 88897 5689999999999987 568999999999999999643 233444
Q ss_pred HHHHHh
Q psy2878 158 LRILDA 163 (181)
Q Consensus 158 l~~l~~ 163 (181)
.+.+++
T Consensus 164 ~~~l~~ 169 (173)
T TIGR00385 164 TEGFLP 169 (173)
T ss_pred HHHHHH
Confidence 544444
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-23 Score=147.32 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=103.7
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCC-ChhHHHHHHHHHHHHHhcC---cEEEEEe
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFV-CPTEISEYNKLVKDFNERN---AILLGGS 82 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~-C~~~~~~l~~l~~~~~~~~---~~vi~Is 82 (181)
.+|+|++. |.+| +++++++++||++||+|| ++||+. |..+++.|+++++++.+++ +++++||
T Consensus 1 ~~p~f~l~---------~~~g----~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs 66 (142)
T cd02968 1 IGPDFTLT---------DQDG----RPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFIS 66 (142)
T ss_pred CCCceEEE---------cCCC----CEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEE
Confidence 37899999 8999 999999999999999998 789996 9999999999999999875 9999999
Q ss_pred cCC----HHHHHHHHHHcCCCcccceeEEEcCC---chHHHHhCCC-CCC-------Cc-ceeeEEEEcCCCcEEEEE
Q psy2878 83 SDN----EFVKLAWRRENSNLYKLNHWQFSDTN---GSLIDQLGIR-HET-------GV-ALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 83 ~d~----~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~-~~~-------g~-~~p~~~liD~~g~i~~~~ 144 (181)
.|+ ++.+++|++++ +.+|+++.|++ ..+++.||+. ... ++ +.|.+||||++|+|++++
T Consensus 67 ~d~~~d~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 67 VDPERDTPEVLKAYAKAF----GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred ECCCCCCHHHHHHHHHHh----CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 854 57788899887 78999999975 7999999987 211 11 357899999999999987
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >KOG0855|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=145.86 Aligned_cols=145 Identities=23% Similarity=0.391 Sum_probs=128.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
+.+|+.+|||+|+ |.|| ..++|.++.|+ ++|++||++..+|.|+.+...++..|++|++.+.+|+|
T Consensus 63 v~~Gd~iPD~tL~---------dedg----~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~G 129 (211)
T KOG0855|consen 63 VNKGDAIPDFTLK---------DEDG----KSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIG 129 (211)
T ss_pred eecCCcCCCcccc---------cCCC----CeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEe
Confidence 4689999999999 9999 99999999885 99999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-C-CCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-H-ETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~-~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
+|.|+...+++|..++ ++++.+++|+.+++.+.+|+. + ..|.+.+..||+|+.|...........+.-++++.+
T Consensus 130 lS~D~s~sqKaF~sKq----nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~ 205 (211)
T KOG0855|consen 130 LSGDDSASQKAFASKQ----NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEAL 205 (211)
T ss_pred eccCchHHHHHhhhhc----cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHH
Confidence 9999999999999998 999999999999999999998 3 345678899999988766655544667777788877
Q ss_pred HHHHh
Q psy2878 159 RILDA 163 (181)
Q Consensus 159 ~~l~~ 163 (181)
+.|.+
T Consensus 206 k~~~~ 210 (211)
T KOG0855|consen 206 KFLKA 210 (211)
T ss_pred HHHhc
Confidence 76653
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=139.32 Aligned_cols=110 Identities=9% Similarity=0.128 Sum_probs=95.7
Q ss_pred CCcEEecccCCCCCCCCCcccceeeeecCCCC-CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHH
Q psy2878 9 SSYRVIGVKPGFNLPEENNVSAFKVITESSFP-GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEF 87 (181)
Q Consensus 9 P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~-gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~ 87 (181)
|+|.+. +.+| +.++|++++ ||++||+|| ++||+.|+.+++.++++++++.. ++.+++|+.++.+
T Consensus 1 p~f~l~---------~~~G----~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~ 65 (114)
T cd02967 1 PTFDLT---------TIDG----APVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKA 65 (114)
T ss_pred CCceee---------cCCC----CEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHH
Confidence 677777 8999 999999997 999999998 88999999999999999888754 6889999877888
Q ss_pred HHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 88 VKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
..++|++++ ++ .+|.+.+ ..+++.|++. ..|++||||++|+|+++.
T Consensus 66 ~~~~~~~~~----~~~~~p~~~~--~~~~~~~~~~-----~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 66 EHQRFLKKH----GLEAFPYVLS--AELGMAYQVS-----KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHHHHh----CCCCCcEEec--HHHHhhcCCC-----CcCeEEEECCCCeEEecc
Confidence 889999987 76 4887764 5688999986 578999999999999875
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=141.93 Aligned_cols=117 Identities=20% Similarity=0.230 Sum_probs=99.2
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec-C
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS-D 84 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~-d 84 (181)
+.+|+|+++ |.+| ..+++++++++||++||+|| ++|||.|+.+++.|+++.+++ +++|++|+. +
T Consensus 1 ~~~p~f~~~---------~~~g--~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~ 65 (127)
T cd03010 1 KPAPAFSLP---------ALPG--PDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKD 65 (127)
T ss_pred CCCCCcccc---------cccC--CCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCC
Confidence 368999998 5554 11568889999999999999 899999999999999987664 599999996 5
Q ss_pred CHHHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 85 NEFVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+.+.+++|++++ +++|+ ++.|+++++++.|++. ..|++|+||++|+|++++.+
T Consensus 66 ~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~v~-----~~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 66 NPENALAWLARH----GNPYAAVGFDPDGRVGIDLGVY-----GVPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred CHHHHHHHHHhc----CCCCceEEECCcchHHHhcCCC-----CCCeEEEECCCceEEEEEec
Confidence 678888998887 77775 6689999999999987 57899999999999999864
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-22 Score=145.82 Aligned_cols=144 Identities=10% Similarity=0.067 Sum_probs=110.0
Q ss_pred CccCccCCCcEEecc-----cCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCc
Q psy2878 2 KTIGQSLSSYRVIGV-----KPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76 (181)
Q Consensus 2 l~~G~~~P~f~l~~~-----~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~ 76 (181)
+.+|+++|...+... .++ +.+. ++++.++++||+.||+|| ++||++|+.++|.|.++ +++|+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~----~~~y----~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~ 89 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGK----DTVY----QPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKF 89 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCC----cccc----eeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCC
Confidence 568999999888743 233 4555 889999999999999998 88999999999999888 66789
Q ss_pred EE------EEEecCC-HHHHHHHHHHcCCCccccee---EEEcCCchHHHHhCCCCCCCcceeeE-EEEcCCCcEEEEEe
Q psy2878 77 IL------LGGSSDN-EFVKLAWRRENSNLYKLNHW---QFSDTNGSLIDQLGIRHETGVALRAT-FIFDPQNIIQHITV 145 (181)
Q Consensus 77 ~v------i~Is~d~-~~~~~~~~~~~~~~~~~~~~---~~~D~~~~~~~~~gv~~~~g~~~p~~-~liD~~g~i~~~~~ 145 (181)
.+ ++|+.|+ ......|.+.+....+..|| ++.|+++.++..||+. ..|++ ||||++|+|++++.
T Consensus 90 ~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~-----~~P~T~fVIDk~GkVv~~~~ 164 (184)
T TIGR01626 90 PPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLN-----SEDSAIIVLDKTGKVKFVKE 164 (184)
T ss_pred CcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCC-----CCCceEEEECCCCcEEEEEe
Confidence 99 9999885 33444444432222366666 9999999999999987 55566 99999999999996
Q ss_pred ccCCCCCCHHHHHHHHHhh
Q psy2878 146 NNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 146 ~~~~~~~~~~~ll~~l~~l 164 (181)
+.. .....++++..|+++
T Consensus 165 G~l-~~ee~e~~~~li~~l 182 (184)
T TIGR01626 165 GAL-SDSDIQTVISLVNGL 182 (184)
T ss_pred CCC-CHHHHHHHHHHHHHH
Confidence 432 233556677777765
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-22 Score=142.27 Aligned_cols=103 Identities=10% Similarity=0.122 Sum_probs=86.2
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-------CcEEEEEecCC-HHHHHHHHHHcCCCcccc
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-------NAILLGGSSDN-EFVKLAWRRENSNLYKLN 103 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-------~~~vi~Is~d~-~~~~~~~~~~~~~~~~~~ 103 (181)
..++|++++||+++|+|| ++|||+|+.++|.|.++|+++.++ ++.+|+||.|. .+..++|.++. +++
T Consensus 16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~----~~~ 90 (146)
T cd03008 16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM----PKK 90 (146)
T ss_pred ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC----CCC
Confidence 568899999999999999 999999999999999999988764 69999999985 44577888887 766
Q ss_pred eeE---EEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 104 HWQ---FSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 104 ~~~---~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
|+. ..+.+..+++.|++. ..|++||||++|+|+...
T Consensus 91 ~~~~p~~~~~~~~l~~~y~v~-----~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 91 WLFLPFEDEFRRELEAQFSVE-----ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred ceeecccchHHHHHHHHcCCC-----CCCEEEEECCCCcEEeeC
Confidence 533 333346899999987 567999999999999765
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-21 Score=131.13 Aligned_cols=111 Identities=23% Similarity=0.439 Sum_probs=101.7
Q ss_pred CCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC--HHHHHHHHHHcC
Q psy2878 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN--EFVKLAWRRENS 97 (181)
Q Consensus 20 ~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~--~~~~~~~~~~~~ 97 (181)
|.+.+.+| +.+++++++||+++|+|| ++||+.|...++.|.++.+++++.++.+++|+.|+ .+..++|.+++
T Consensus 2 ~~~~~~~g----~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~- 75 (116)
T cd02966 2 FSLPDLDG----KPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY- 75 (116)
T ss_pred ccccCCCC----CEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence 34458999 999999999999999998 78999999999999999999987789999999998 89999999987
Q ss_pred CCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 98 NLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 98 ~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+.+|+++.|.+..+.+.|++. ..|+++|+|++|+|++.+
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~-----~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 76 ---GITFPVLLDPDGELAKAYGVR-----GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred ---CCCcceEEcCcchHHHhcCcC-----ccceEEEECCCCcEEEEe
Confidence 799999999999999999986 678999999999999887
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-21 Score=159.94 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=102.6
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
.+++.+|+|++. |.+| ++++++ +||++||+|| ++||++|+.++|.|++++++++..+++||+|+
T Consensus 33 ~~~~~lP~f~l~---------D~dG----~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs 96 (521)
T PRK14018 33 TVPHTLSTLKTA---------DNRP----ASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVA 96 (521)
T ss_pred cccCCCCCeEee---------cCCC----ceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 456789999999 9999 999987 7999999999 99999999999999999999988889999998
Q ss_pred cC------CHHHHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEecc
Q psy2878 83 SD------NEFVKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 83 ~d------~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
.+ ..+..++|.+.. ++ .++++.|.+.++++.|++. ..|++||||++|+|++.+.+.
T Consensus 97 ~~~~~~e~~~~~~~~~~~~~----~y~~~pV~~D~~~~lak~fgV~-----giPTt~IIDkdGkIV~~~~G~ 159 (521)
T PRK14018 97 SPGFLHEKKDGDFQKWYAGL----DYPKLPVLTDNGGTLAQSLNIS-----VYPSWAIIGKDGDVQRIVKGS 159 (521)
T ss_pred cccccccccHHHHHHHHHhC----CCcccceeccccHHHHHHcCCC-----CcCeEEEEcCCCeEEEEEeCC
Confidence 63 234455555544 43 6899999999999999987 678999999999999999643
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=130.43 Aligned_cols=108 Identities=18% Similarity=0.275 Sum_probs=96.2
Q ss_pred CCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC--H
Q psy2878 9 SSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN--E 86 (181)
Q Consensus 9 P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~--~ 86 (181)
|+|++. |.+| +.+++++++||+++|+|| ++||+.|+.+++.|++++++ +.+++|+.++ .
T Consensus 1 p~f~l~---------~~~g----~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~ 61 (123)
T cd03011 1 PLFTAT---------TLDG----EQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDD 61 (123)
T ss_pred CCceee---------cCCC----CEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCH
Confidence 678887 9999 999999999999999998 88999999999999999866 6778888754 6
Q ss_pred HHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 87 FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+.+++|++++ +++|+++.|++.++.+.|++. ..|+.+|||++| |++.+.
T Consensus 62 ~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~i~-----~~P~~~vid~~g-i~~~~~ 110 (123)
T cd03011 62 GAVARFMQKK----GYGFPVINDPDGVISARWGVS-----VTPAIVIVDPGG-IVFVTT 110 (123)
T ss_pred HHHHHHHHHc----CCCccEEECCCcHHHHhCCCC-----cccEEEEEcCCC-eEEEEe
Confidence 8888999987 889999999999999999987 678999999999 988885
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-20 Score=137.38 Aligned_cols=138 Identities=12% Similarity=0.131 Sum_probs=102.4
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS-- 83 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~-- 83 (181)
..+++|++. |.+| ++++|++++||++||+|| ++||+.|. +++.|++++++|+++|+.|+||+.
T Consensus 3 ~~~~~f~~~---------~~~G----~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nq 67 (183)
T PRK10606 3 DSILTTVVT---------TIDG----EVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQ 67 (183)
T ss_pred CCccCcEeE---------CCCC----CEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccc
Confidence 357888888 8999 999999999999999997 88999885 899999999999999999999987
Q ss_pred ------CCHHHHHHHHH-HcCCCcccceeEEEc--CCch----HHHHhCCC-CC-----------------------CCc
Q psy2878 84 ------DNEFVKLAWRR-ENSNLYKLNHWQFSD--TNGS----LIDQLGIR-HE-----------------------TGV 126 (181)
Q Consensus 84 ------d~~~~~~~~~~-~~~~~~~~~~~~~~D--~~~~----~~~~~gv~-~~-----------------------~g~ 126 (181)
++.+++++|++ ++ +++||++++ .++. +.+-+.-. .. ..+
T Consensus 68 f~~qe~~~~~ei~~f~~~~~----g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i 143 (183)
T PRK10606 68 FLGQEPGSDEEIKTYCRTTW----GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDI 143 (183)
T ss_pred cccCCCCCHHHHHHHHHHcc----CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcc
Confidence 45678889997 55 899999954 3322 22222100 00 001
Q ss_pred c-eeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 127 A-LRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 127 ~-~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. +-+-||||++|+++.++. ........++.++|+++
T Consensus 144 ~WNF~KFLv~~~G~vv~r~~--~~~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 144 LWNFEKFLVGRDGQVIQRFS--PDMTPEDPIVMESIKLA 180 (183)
T ss_pred cccCEEEEECCCCcEEEEEC--CCCCCCHHHHHHHHHHH
Confidence 1 235899999999999994 33333444566666544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-20 Score=166.79 Aligned_cols=123 Identities=14% Similarity=0.134 Sum_probs=106.7
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeec-CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITE-SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l-~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
..|.++|+|..... +.+| +++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++.||+|
T Consensus 392 ~~g~~~p~f~~~~~-------~~~g----~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV 459 (1057)
T PLN02919 392 KTATKVPEFPPKLD-------WLNT----APLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGV 459 (1057)
T ss_pred ccCCcCCCCccccc-------ccCC----ccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEE
Confidence 46899999988721 3688 89998 6899999999999 8899999999999999999999889999999
Q ss_pred ec---C---CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 82 SS---D---NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 82 s~---d---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+. | +.+..++|+.++ +++||++.|.+..+++.|++. ..|++||||++|+|++++.+
T Consensus 460 ~~~~~D~~~~~~~~~~~~~~~----~i~~pvv~D~~~~~~~~~~V~-----~iPt~ilid~~G~iv~~~~G 521 (1057)
T PLN02919 460 HSAKFDNEKDLEAIRNAVLRY----NISHPVVNDGDMYLWRELGVS-----SWPTFAVVSPNGKLIAQLSG 521 (1057)
T ss_pred ecccccccccHHHHHHHHHHh----CCCccEEECCchHHHHhcCCC-----ccceEEEECCCCeEEEEEec
Confidence 74 2 245566777776 999999999999999999987 67899999999999999853
|
|
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=129.06 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=85.1
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCC-HHHHHHHHHHcCCCcccceeEEE
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDN-EFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
+++++++++||++||+|| ++||++|+.+++.|++++++++++ ++.+++|+.|. .+..++|.+++ + +|..+.
T Consensus 8 ~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~----~-~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM----P-PWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC----C-CeEeec
Confidence 489999999999999998 889999999999999999999875 79999999885 45777888876 4 444432
Q ss_pred --c--CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 109 --D--TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 109 --D--~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
| ....+++.|++. ..|+++|||++|+|+++.
T Consensus 82 ~~d~~~~~~~~~~~~v~-----~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 82 FEDEELRELLEKQFKVE-----GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred cCcHHHHHHHHHHcCCC-----CCCEEEEECCCCCEEchh
Confidence 3 235788889987 568999999999999776
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-20 Score=130.77 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=86.1
Q ss_pred CCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCCHH-HHHHHHHHcCCC
Q psy2878 23 PEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDNEF-VKLAWRRENSNL 99 (181)
Q Consensus 23 ~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~~~-~~~~~~~~~~~~ 99 (181)
.|.+| +.+++++++||++||+|| ++||+.|+.+++.|++++++++++ ++++++|+.|... ..+++.+++ ..
T Consensus 4 ~~~~G----~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~-~~ 77 (131)
T cd03009 4 LRNDG----GKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKM-PW 77 (131)
T ss_pred cccCC----CCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcC-Ce
Confidence 37899 999999999999999998 789999999999999999999875 7999999998643 334444432 00
Q ss_pred cccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 100 YKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 100 ~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
..+++.. .|.+..+++.|++. ..|+++|||++|+|+...
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 78 LAVPFSD-RERRSRLNRTFKIE-----GIPTLIILDADGEVVTTD 116 (131)
T ss_pred eEcccCC-HHHHHHHHHHcCCC-----CCCEEEEECCCCCEEccc
Confidence 1222222 34457899999987 568999999999998765
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-18 Score=125.34 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=82.9
Q ss_pred CcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCccccee
Q psy2878 26 NNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHW 105 (181)
Q Consensus 26 ~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~ 105 (181)
+| +.+++++++ ||+|| ++|||+|+.++|.|+++++++ ++.|++||.|... ...||
T Consensus 62 dG----~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~-------------~~~fP 116 (181)
T PRK13728 62 NG----RQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG-------------DTAFP 116 (181)
T ss_pred CC----CEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-------------CCCCc
Confidence 78 999999998 66677 899999999999999999887 6999999987531 36899
Q ss_pred EEEc-CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHHhhc
Q psy2878 106 QFSD-TNGSLIDQLGIRHETGVALRATFIFDPQNIIQH-ITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 106 ~~~D-~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~-~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++.| ....+.+.||+. -...|++||||++|++++ .+.+. .+.+++.+.++++.
T Consensus 117 v~~dd~~~~~~~~~g~~---~~~iPttfLId~~G~i~~~~~~G~----~~~~~L~~~I~~ll 171 (181)
T PRK13728 117 EALPAPPDVMQTFFPNI---PVATPTTFLVNVNTLEALPLLQGA----TDAAGFMARMDTVL 171 (181)
T ss_pred eEecCchhHHHHHhCCC---CCCCCeEEEEeCCCcEEEEEEECC----CCHHHHHHHHHHHH
Confidence 9995 567788889841 015789999999999976 55432 23445555555443
|
|
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=114.63 Aligned_cols=125 Identities=20% Similarity=0.383 Sum_probs=110.9
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|+++|+|++. +.+. +.++++++.||..+|.-|++-.+|+|..+...+++...++. ++.|+.|
T Consensus 18 ~~vGd~ap~ftl~---------~~dL----~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~I 82 (158)
T COG2077 18 PQVGDKAPDFTLV---------GKDL----NDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCI 82 (158)
T ss_pred CccCCcCCceEEE---------cCcc----cceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEE
Confidence 6899999999999 6777 89999999999999999999999999999999998877776 5899999
Q ss_pred ecCCHHHHHHHHHHcCCCcccc-eeEEEcC-CchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEe
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLN-HWQFSDT-NGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~-~~~~~D~-~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~ 145 (181)
|+|-|.++.+|+... ++. ...++|- +..+.++||+. .. .|+..|+.|++|.+|+|+|..+
T Consensus 83 S~DLPFAq~RfC~ae----Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 83 SMDLPFAQKRFCGAE----GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred eCCChhHHhhhhhhc----CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 999999999999987 665 7778885 56799999998 33 4777899999999999999985
|
|
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=120.96 Aligned_cols=122 Identities=19% Similarity=0.341 Sum_probs=96.8
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEec
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSS 83 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~ 83 (181)
...|+|++. |++| +++++++++||++||+|+++.|-..|+..+..|+++++++.+. +++++.||.
T Consensus 30 ~~~~~f~L~---------d~~G----~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISv 96 (174)
T PF02630_consen 30 RIVPDFTLT---------DQDG----KTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISV 96 (174)
T ss_dssp CSSST-EEE---------ETTS----SEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred ccCCCcEEE---------cCCC----CEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEe
Confidence 456778888 9999 9999999999999999998887678999999999999999884 689999998
Q ss_pred CC----HHHHHHHHHHcCCCcccceeEEEcC---CchHHHHhCCC-CC-----CC-----cceeeEEEEcCCCcEEEEE
Q psy2878 84 DN----EFVKLAWRRENSNLYKLNHWQFSDT---NGSLIDQLGIR-HE-----TG-----VALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 84 d~----~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~-~~-----~g-----~~~p~~~liD~~g~i~~~~ 144 (181)
|| ++.+++|++.+ +.+|..+.-. -.++++.|++. .. .+ .|...+|||||+|+|+..+
T Consensus 97 DP~~DTp~~L~~Y~~~~----~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 97 DPERDTPEVLKKYAKKF----GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp STTTC-HHHHHHHHHCH----TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred CCCCCCHHHHHHHHHhc----CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 76 67788888876 6666655432 36788889987 11 11 2566899999999999988
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=109.04 Aligned_cols=90 Identities=20% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH-hcCcEEEEEecCCH-HHHHHHHHHcCCCcccceeEEEcC---CchHH
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN-ERNAILLGGSSDNE-FVKLAWRRENSNLYKLNHWQFSDT---NGSLI 115 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~-~~~~~vi~Is~d~~-~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~ 115 (181)
||+++|+|| ++||+.|..+++.|.++++++. +.++++|+||.|.. +..+++.++. +.+|..+... ...+.
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN----NFPWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC----TTSSEEEETTTHHHHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc----CCCceEEeeCcchHHHHH
Confidence 799999999 8899999999999999999999 56899999999863 5666666654 5566665543 47889
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcE
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNII 140 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i 140 (181)
+.|++. ..|+.+|+|++|+|
T Consensus 76 ~~~~i~-----~iP~~~lld~~G~I 95 (95)
T PF13905_consen 76 KKYGIN-----GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHTT-T-----SSSEEEEEETTSBE
T ss_pred HHCCCC-----cCCEEEEECCCCCC
Confidence 999987 67899999999987
|
... |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-15 Score=113.08 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=107.0
Q ss_pred CCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH-h--cCcEEEEEecCCHHHHHHHHHHc
Q psy2878 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN-E--RNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 20 ~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~-~--~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
|.|.|++| +++++.+++||+.||+|.++.|..+|+.++..|.++++++. . .+++++.||.|+..+..+.++++
T Consensus 50 f~l~d~~G----~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 50 FELTDQDG----KPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred eeeecCCC----CEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 44449999 99999999999999999988877799999999999999998 3 57899999998866666666666
Q ss_pred CC-CcccceeEEEcC---CchHHHHhCCC-C---CC---C---cceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 97 SN-LYKLNHWQFSDT---NGSLIDQLGIR-H---ET---G---VALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 97 ~~-~~~~~~~~~~D~---~~~~~~~~gv~-~---~~---g---~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
.. .+...|..+... ..++++.|++. . .. . .|+...||||++|+++..+.+..+ .+++++.|+
T Consensus 126 ~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~----~~~i~~~l~ 201 (207)
T COG1999 126 AELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP----PEEIAADLK 201 (207)
T ss_pred hcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----hHHHHHHHH
Confidence 44 446667777652 37889999987 1 11 1 245678999999999998853322 677888777
Q ss_pred hhcc
Q psy2878 163 AIQT 166 (181)
Q Consensus 163 ~l~~ 166 (181)
.+..
T Consensus 202 ~l~~ 205 (207)
T COG1999 202 KLLK 205 (207)
T ss_pred HHhh
Confidence 6643
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=100.25 Aligned_cols=138 Identities=17% Similarity=0.351 Sum_probs=110.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHHHhcCc-E
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDFNERNA-I 77 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~~~~~~-~ 77 (181)
|+.+|+++|+.++....++. +..| ...++-.++ +||.++|+-.++.++|.|.. ++|.+.+++++|+++|+ +
T Consensus 2 ~~~vg~klP~vtf~tr~~~~---~~~~---~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~ 75 (165)
T COG0678 2 TIMVGKKLPAVTFKTRVGDE---TADG---WVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDE 75 (165)
T ss_pred ccccCCcCCceEeEEeeccc---cCCC---cccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCce
Confidence 46799999999998543320 1222 123444454 88999999999999999966 89999999999999999 8
Q ss_pred EEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-C--CCC---cceeeEEEEcCCCcEEEEEecc
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-H--ETG---VALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~--~~g---~~~p~~~liD~~g~i~~~~~~~ 147 (181)
|+.||++++..+.+|++...... ...+++|.++++.+.+|+. + ..| .++|...|+ +||.|.+.++.+
T Consensus 76 I~cVSVND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~ 148 (165)
T COG0678 76 IYCVSVNDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEP 148 (165)
T ss_pred EEEEEeCcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecC
Confidence 89999999999999999873222 5788999999999999998 3 233 357888899 599999999754
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-15 Score=107.14 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=68.9
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+.+++++ +.||+|| ++||++|+.++|.|+++++++ ++.|++|+.|.... ..|+...|.+
T Consensus 45 ~~~~l~~----~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~-------------~~fp~~~~~~ 103 (153)
T TIGR02738 45 RHANQDD----YALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL-------------TGFPDPLPAT 103 (153)
T ss_pred hhhhcCC----CEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc-------------cccccccCCc
Confidence 5555544 4588888 889999999999999999887 68999999886321 1344444433
Q ss_pred chHH-HHh---CCCCCCCcceeeEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHHHh
Q psy2878 112 GSLI-DQL---GIRHETGVALRATFIFDPQNIIQH-ITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 112 ~~~~-~~~---gv~~~~g~~~p~~~liD~~g~i~~-~~~~~~~~~~~~~~ll~~l~~ 163 (181)
.... +.| ++. ..|++||||++|++++ .+.+. .+.+++.+.|++
T Consensus 104 ~~~~~~~~~~~~v~-----~iPTt~LID~~G~~i~~~~~G~----~s~~~l~~~I~~ 151 (153)
T TIGR02738 104 PEVMQTFFPNPRPV-----VTPATFLVNVNTRKAYPVLQGA----VDEAELANRMDE 151 (153)
T ss_pred hHHHHHHhccCCCC-----CCCeEEEEeCCCCEEEEEeecc----cCHHHHHHHHHH
Confidence 4443 445 444 5689999999988655 45332 234455555554
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.8e-14 Score=99.14 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=87.2
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--------CHHHHHHHHHH
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--------NEFVKLAWRRE 95 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--------~~~~~~~~~~~ 95 (181)
+.+| ++++|++++||.+||+.. |+-|..-+ +...|+.||++|+++|+.|+++-.+ +.+++++|+..
T Consensus 12 ~~~G----~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~ 85 (162)
T COG0386 12 DIDG----EPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQL 85 (162)
T ss_pred ccCC----CCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHh
Confidence 9999 999999999999888887 66787654 9999999999999999999999753 46788888886
Q ss_pred cCCCcccceeEEEcCC---chHHHHhCCC--CC------CCcc-eeeEEEEcCCCcEEEEEe
Q psy2878 96 NSNLYKLNHWQFSDTN---GSLIDQLGIR--HE------TGVA-LRATFIFDPQNIIQHITV 145 (181)
Q Consensus 96 ~~~~~~~~~~~~~D~~---~~~~~~~gv~--~~------~g~~-~p~~~liD~~g~i~~~~~ 145 (181)
. ++.+||++.-.+ ...+..|.-. .. ..+- +.+-||||++|+|+.++.
T Consensus 86 ~---YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 86 N---YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred c---cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 4 699999997522 2222222222 11 1122 457899999999999994
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=98.22 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=76.6
Q ss_pred eeeecCC--CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEc
Q psy2878 32 KVITESS--FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD 109 (181)
Q Consensus 32 ~~~~l~~--~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D 109 (181)
....+.+ .+||++||+|| +.||+.|+.+++.|.++++++.. .+.++.|..|...
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~---------------------- 64 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK---------------------- 64 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc----------------------
Confidence 4444443 36889999998 88999999999999999999875 4788888887521
Q ss_pred CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccCC
Q psy2878 110 TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGK 168 (181)
Q Consensus 110 ~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~ 168 (181)
...+++.|++. ..|+++++|++|+++..+.+. ...+++.+.|+++..+.
T Consensus 65 -~~~~~~~~~V~-----~iPt~v~~~~~G~~v~~~~G~----~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 65 -WLPEIDRYRVD-----GIPHFVFLDREGNEEGQSIGL----QPKQVLAQNLDALVAGE 113 (142)
T ss_pred -cHHHHHHcCCC-----CCCEEEEECCCCCEEEEEeCC----CCHHHHHHHHHHHHcCC
Confidence 01456778886 568999999999999988532 23466666676665443
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >KOG2792|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-13 Score=102.33 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=101.5
Q ss_pred cccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-C--cEEEEEecCC----HH
Q psy2878 15 GVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-N--AILLGGSSDN----EF 87 (181)
Q Consensus 15 ~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~--~~vi~Is~d~----~~ 87 (181)
..+|+|.|.|.+| +.++-.++.|||+||+|-++.|...|+.|+..|.+..+++++. + +.-+.||.|+ ++
T Consensus 117 ~iGGpF~L~d~~G----k~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~ 192 (280)
T KOG2792|consen 117 AIGGPFSLVDHDG----KRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVE 192 (280)
T ss_pred ccCCceEEEecCC----CeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHH
Confidence 4567788889999 9999999999999999987776668999999999999999884 3 3468888876 56
Q ss_pred HHHHHHHHcCCCcccceeEEEcC---CchHHHHhCCC-CC------CCc---ceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 88 VKLAWRRENSNLYKLNHWQFSDT---NGSLIDQLGIR-HE------TGV---ALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~-~~------~g~---~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
.+++|..++ +....-+... =..+++.|.|| .. +.+ ++=..|||||+|..+..+ ....+.
T Consensus 193 ~~~eY~~eF----~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~----GrN~~~ 264 (280)
T KOG2792|consen 193 VVAEYVSEF----HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY----GRNYDA 264 (280)
T ss_pred HHHHHHHhc----ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh----cccCCH
Confidence 667777765 6555444432 27889999998 11 111 234578999999998766 223455
Q ss_pred HHHHHHHHh
Q psy2878 155 IETLRILDA 163 (181)
Q Consensus 155 ~~ll~~l~~ 163 (181)
+++.+.|.+
T Consensus 265 ~~~~~~I~~ 273 (280)
T KOG2792|consen 265 DELADSILK 273 (280)
T ss_pred HHHHHHHHH
Confidence 666666543
|
|
| >KOG0541|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=91.67 Aligned_cols=140 Identities=19% Similarity=0.323 Sum_probs=105.0
Q ss_pred CCccCccCCCcEEecccCCCCCCC-CCcccceeeeecCCC-CCCeEEEEEeeCCCCCCC-hhHHHHHHHHHHHHHhcCc-
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPE-ENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVC-PTEISEYNKLVKDFNERNA- 76 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d-~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C-~~~~~~l~~l~~~~~~~~~- 76 (181)
|+.+|+.+|+-+.....++ .+ ..| .+++++++ +||-++|+=.++.+.|.| ..++|.+.+..++++++|+
T Consensus 8 ~i~vGd~~p~~~is~~~~~---~~~~~~----~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd 80 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDE---PEQLQG----NTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVD 80 (171)
T ss_pred cccccCccccccchhhccC---cccccc----ceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCc
Confidence 4789999999333211110 01 112 28899887 888898988999999996 7789999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC--C--C-cceeeEEEEcCCCcEEEEEeccCCC
Q psy2878 77 ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE--T--G-VALRATFIFDPQNIIQHITVNNLNV 150 (181)
Q Consensus 77 ~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~--~--g-~~~p~~~liD~~g~i~~~~~~~~~~ 150 (181)
+|+.||+|++..+.+|.+.+.... ...+++|+++++.+.+|+. +. . | .+-|...+++ ||+|.+..+.+.+.
T Consensus 81 ~iicvSVnDpFv~~aW~k~~g~~~--~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vve-ngkV~~~nvE~~g~ 157 (171)
T KOG0541|consen 81 EIICVSVNDPFVMKAWAKSLGAND--HVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVE-NGKVTVVNVEEGGT 157 (171)
T ss_pred EEEEEecCcHHHHHHHHhhcCccc--eEEEEecCCCceeeeccceeeeccccCccccccEEEEEe-CCeEEEEEeccCCC
Confidence 788999999999999999882222 4667899999999999987 32 2 2 2344566775 99999999855444
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=102.97 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=79.5
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+...+++++|+++||+|| ++||++|..++|.|+++.+++ ++.|++||.|.... ..|+.+ +.+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~-------------~~fp~~-~~d 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL-------------PGFPNA-RPD 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-------------ccCCcc-cCC
Confidence 457888999999999888 789999999999999998887 59999999986421 124544 445
Q ss_pred chHHHHhCCCCCCCcceeeEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 112 GSLIDQLGIRHETGVALRATFIFDPQ-NIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 112 ~~~~~~~gv~~~~g~~~p~~~liD~~-g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
..+++.||+. ..|++||+|++ |++.....+. -..+++.+.+..+.+
T Consensus 219 ~~la~~~gV~-----~vPtl~Lv~~~~~~v~~v~~G~----~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 219 AGQAQQLKIR-----TVPAVFLADPDPNQFTPIGFGV----MSADELVDRILLAAH 265 (271)
T ss_pred HHHHHHcCCC-----cCCeEEEEECCCCEEEEEEeCC----CCHHHHHHHHHHHhc
Confidence 6789999997 67899999996 4554444222 234566666655543
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=83.84 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=66.9
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++.+||++||.|| ++||++|+.++|.|.++.+++ .++.++.|+.|..... .++++
T Consensus 11 ~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~----------------------~~l~~ 65 (103)
T cd02985 11 KKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDST----------------------MELCR 65 (103)
T ss_pred HHcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHH----------------------HHHHH
Confidence 3446899999998 889999999999999999998 4688999988763321 24566
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
.|++. ..|+.+++ ++|+++..+.+ ...+++.+.+.
T Consensus 66 ~~~V~-----~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~~~ 100 (103)
T cd02985 66 REKII-----EVPHFLFY-KDGEKIHEEEG-----IGPDELIGDVL 100 (103)
T ss_pred HcCCC-----cCCEEEEE-eCCeEEEEEeC-----CCHHHHHHHHH
Confidence 77876 45675555 89999988853 33456666554
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >KOG1651|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=87.76 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=91.1
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD-- 84 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d-- 84 (181)
.+=+|+.. |.+| +.++|+.|+||++|++.. |+.|..-..+..+|+.++++|+++|+.|++.-.+
T Consensus 13 siydf~~~---------d~~G----~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQF 78 (171)
T KOG1651|consen 13 SIYDFSAK---------DLDG----EYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQF 78 (171)
T ss_pred ceeeeEEe---------cCCC----CCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccc
Confidence 34467777 9999 999999999999999988 7789888888999999999999999999999753
Q ss_pred ------CHHHHHHHHHHcCCCcccceeEEEc--CCc-hHHHHhCCC-C-CC-----Ccc-eeeEEEEcCCCcEEEEEe
Q psy2878 85 ------NEFVKLAWRRENSNLYKLNHWQFSD--TNG-SLIDQLGIR-H-ET-----GVA-LRATFIFDPQNIIQHITV 145 (181)
Q Consensus 85 ------~~~~~~~~~~~~~~~~~~~~~~~~D--~~~-~~~~~~gv~-~-~~-----g~~-~p~~~liD~~g~i~~~~~ 145 (181)
..+++..|+.. +++..|+++.- -++ ..+..|... . .. .+. +.+-||||++|+++.++.
T Consensus 79 g~QEp~~n~Ei~~f~~~---r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 79 GNQEPGSNEEILNFVKV---RYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred cCcCCCCcHHHHHHHHh---ccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 34566666653 25888888863 232 222333333 1 11 222 356899999999999995
|
|
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=81.14 Aligned_cols=91 Identities=9% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
...|++++|.|| +.||+.|+...|.+.++.++++..++.+..|+.+. +..+++.
T Consensus 21 ~~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-------------------------~~~l~~~ 74 (111)
T cd02963 21 KSFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-------------------------ERRLARK 74 (111)
T ss_pred ccCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-------------------------cHHHHHH
Confidence 346789999998 99999999999999999999987678888887663 2356778
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
|++. ..|+++++. +|+++....+. ...+++.+.|+++
T Consensus 75 ~~V~-----~~Pt~~i~~-~g~~~~~~~G~----~~~~~l~~~i~~~ 111 (111)
T cd02963 75 LGAH-----SVPAIVGII-NGQVTFYHDSS----FTKQHVVDFVRKL 111 (111)
T ss_pred cCCc-----cCCEEEEEE-CCEEEEEecCC----CCHHHHHHHHhcC
Confidence 8886 678999994 99987776321 3456677776653
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >KOG2501|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-11 Score=84.92 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=85.5
Q ss_pred CCCCCcccceeeeecC-CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCC-HHHHHHHHHHcC
Q psy2878 22 LPEENNVSAFKVITES-SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDN-EFVKLAWRRENS 97 (181)
Q Consensus 22 ~~d~~G~~~~~~~~l~-~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~-~~~~~~~~~~~~ 97 (181)
|...+| ..+..+ .++||.+.++| .+.|||+|+.-.|.|.+.|++..+. .+.||.||.|. .+++.+|...+
T Consensus 17 l~~~~~----~~~~~~~~l~gKvV~lyF-sA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~- 90 (157)
T KOG2501|consen 17 LRKQDG----TEVLASEALQGKVVGLYF-SAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH- 90 (157)
T ss_pred eeccCC----ccchHhHhhCCcEEEEEE-EEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc-
Confidence 346777 666666 67999666665 5999999999999999999999985 48999999986 56777788776
Q ss_pred CCcccceeEEEc---CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 98 NLYKLNHWQFSD---TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 98 ~~~~~~~~~~~D---~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+.+|..+.= ...++.+.|++. ..|+..++.++|+++...
T Consensus 91 ---~~~W~~iPf~d~~~~~l~~ky~v~-----~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 ---HGDWLAIPFGDDLIQKLSEKYEVK-----GIPALVILKPDGTVVTED 132 (157)
T ss_pred ---CCCeEEecCCCHHHHHHHHhcccC-----cCceeEEecCCCCEehHh
Confidence 666666642 237788888886 457999999999988655
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-11 Score=80.28 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++++||+++|.|| ++||++|+.++|.+.++.++++ ++.++.|..+. ....+++
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~------------------------~~~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS------------------------IKPSLLS 66 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC------------------------CCHHHHH
Confidence 4678999999999 9999999999999999999986 57777775441 1246778
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
+|++. ..|++++++ +| .+..+.+. .+.+++.+
T Consensus 67 ~~~V~-----~~PT~~lf~-~g-~~~~~~G~----~~~~~l~~ 98 (100)
T cd02999 67 RYGVV-----GFPTILLFN-ST-PRVRYNGT----RTLDSLAA 98 (100)
T ss_pred hcCCe-----ecCEEEEEc-CC-ceeEecCC----CCHHHHHh
Confidence 89987 678999997 45 55555322 44555554
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-11 Score=83.97 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=72.9
Q ss_pred CC-CeEEEEEeeCCCCCCChhHHHHHH---HHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 40 PG-KWKIFYFYPKDFTFVCPTEISEYN---KLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 40 ~g-k~~ll~F~~~~~cp~C~~~~~~l~---~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
.| |+++|+|| ++||+.|....+.+. ++.+.+++ ++.++.|+.+.......| ........+++
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~------------~~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDF------------DGEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeecc------------CCCCccHHHHH
Confidence 57 88989888 999999999988874 55555653 688888888754322221 11112457899
Q ss_pred HHhCCCCCCCcceeeEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 116 DQLGIRHETGVALRATFIFDPQ-NIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~-g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++|++. ..|+++++|++ |+++....+. ...+++.+.|+.+.+
T Consensus 78 ~~~~v~-----~~Pt~~~~~~~gg~~~~~~~G~----~~~~~~~~~l~~~~~ 120 (125)
T cd02951 78 RKYRVR-----FTPTVIFLDPEGGKEIARLPGY----LPPDEFLAYLEYVQE 120 (125)
T ss_pred HHcCCc-----cccEEEEEcCCCCceeEEecCC----CCHHHHHHHHHHHHh
Confidence 999987 67899999999 8999888532 234556666665543
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=88.97 Aligned_cols=137 Identities=16% Similarity=0.097 Sum_probs=101.2
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceee-eecCCC-CC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKV-ITESSF-PG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~-~~l~~~-~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
.+|..||+..+. ..+| +. .++.|+ +| ||+||+|-.. .||+-+..+..++++.++|.+. ++++
T Consensus 74 ~~G~~APns~vv---------~l~g----~~~~~ildf~~g~RPLVlnFGS~-TCPpF~~~l~~f~~l~~~f~d~-adFl 138 (237)
T PF00837_consen 74 KLGGPAPNSPVV---------TLDG----QRSCRILDFAKGNRPLVLNFGSC-TCPPFMAKLDAFKRLVEDFSDV-ADFL 138 (237)
T ss_pred eCCCCCCCCceE---------eeCC----CcceeHHHhccCCCCeEEEcccc-cchHHHHHHHHHHHHHHHhhhh-hhee
Confidence 579999999999 6777 77 899998 44 7999999744 4999999999999999999974 4565
Q ss_pred EEec------C---------------C-HHHHHHHHHHcCCCcccceeEEEcC-CchHHHHhCCCCCCCcceeeEEEEcC
Q psy2878 80 GGSS------D---------------N-EFVKLAWRRENSNLYKLNHWQFSDT-NGSLIDQLGIRHETGVALRATFIFDP 136 (181)
Q Consensus 80 ~Is~------d---------------~-~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~gv~~~~g~~~p~~~liD~ 136 (181)
.|-. | + .+.+.+ ++... ...+.+|++.|. ++...+.||++ |. ..|||.
T Consensus 139 ~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~a-A~~l~-~~~~~~pi~vD~mdN~~~~~YgA~-----Pe-RlyIi~- 209 (237)
T PF00837_consen 139 IVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRA-AKLLK-EEFPQCPIVVDTMDNNFNKAYGAL-----PE-RLYIIQ- 209 (237)
T ss_pred hhhHhhhCcCCCccCCCCceeecCCCCHHHHHHH-HHHHH-hhCCCCCEEEEccCCHHHHHhCCC-----cc-eEEEEE-
Confidence 5532 1 0 111111 11111 124789999996 78999999976 43 577774
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 137 QNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 137 ~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+|+|+|.. +..+-.-+++++.+.|++.
T Consensus 210 ~gkv~Y~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 210 DGKVVYKG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCEEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence 99999999 4555567899999999875
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-10 Score=76.59 Aligned_cols=87 Identities=7% Similarity=0.149 Sum_probs=65.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.|++++|+|| ++||++|+...+.|.++++++....+.++.|..|.. +++++|+
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~--------------------------~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTI--------------------------DTLKRYR 68 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCH--------------------------HHHHHcC
Confidence 4788999998 999999999999999999988755567777776621 2446778
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++.+..+ ...++++++|+++
T Consensus 69 v~-----~~Pt~~~~-~~g~~~~~~~G-----~~~~~~~~~i~~~ 102 (102)
T cd02948 69 GK-----CEPTFLFY-KNGELVAVIRG-----ANAPLLNKTITEL 102 (102)
T ss_pred CC-----cCcEEEEE-ECCEEEEEEec-----CChHHHHHHHhhC
Confidence 76 56765555 69999988853 3457788777654
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-10 Score=73.87 Aligned_cols=85 Identities=12% Similarity=0.165 Sum_probs=63.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+|++++|+|| +.||++|+...+.+.++.+.+.. .+.++.|..+. ...+++.|+
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA-------------------------QPQIAQQFG 63 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC-------------------------CHHHHHHcC
Confidence 4788999998 89999999999999999998865 36666666543 246777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+. ..|++++++ +|+++..+.+. .+.+++.+.|
T Consensus 64 i~-----~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~l 95 (96)
T cd02956 64 VQ-----ALPTVYLFA-AGQPVDGFQGA----QPEEQLRQML 95 (96)
T ss_pred CC-----CCCEEEEEe-CCEEeeeecCC----CCHHHHHHHh
Confidence 87 678999997 99998776422 3345555444
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-10 Score=76.14 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=64.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
.||+++|.|| ++||++|....+.+ .++.+.+++ ++.++.|..+..+.. ..++++
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~---------------------~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPE---------------------ITALLK 66 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHH---------------------HHHHHH
Confidence 4788999998 89999999888777 567777765 788888886542110 135667
Q ss_pred HhCCCCCCCcceeeEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 117 QLGIRHETGVALRATFIFDP-QNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~-~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
.|++. ..|+++++++ +|+++.++.+. ...+++.+.|
T Consensus 67 ~~~i~-----~~Pti~~~~~~~g~~~~~~~G~----~~~~~l~~~l 103 (104)
T cd02953 67 RFGVF-----GPPTYLFYGPGGEPEPLRLPGF----LTADEFLEAL 103 (104)
T ss_pred HcCCC-----CCCEEEEECCCCCCCCcccccc----cCHHHHHHHh
Confidence 78876 6789999999 99988777422 2345555544
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=78.66 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=66.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH--hcCcEEEEEecCCHHH-HHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN--ERNAILLGGSSDNEFV-KLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~--~~~~~vi~Is~d~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
+||++|++|+ ..|||.|....+.+.+..+--. +.++.++.++.+.... ..++.... +..+.. ....++++
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~l~~ 76 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFD----GQKNVR--LSNKELAQ 76 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHT----CHSSCH--HHHHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccc----cchhhh--HHHHHHHH
Confidence 4789999998 8899999988888776544222 2358888888876543 33344432 221211 22458999
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
.||+. .+|+++++|++|+++++..+- ...+++++.
T Consensus 77 ~~~v~-----gtPt~~~~d~~G~~v~~~~G~----~~~~~l~~~ 111 (112)
T PF13098_consen 77 RYGVN-----GTPTIVFLDKDGKIVYRIPGY----LSPEELLKM 111 (112)
T ss_dssp HTT-------SSSEEEECTTTSCEEEEEESS------HHHHHHH
T ss_pred HcCCC-----ccCEEEEEcCCCCEEEEecCC----CCHHHHHhh
Confidence 99997 678999999999999887532 233555544
|
... |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-09 Score=72.27 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=64.8
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.|||.|+...|.++++.+++.. ++.++.|..+.. ..+++.|++
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~-------------------------~~~~~~~~v 73 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-------------------------PGTAPKYGI 73 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC-------------------------hhHHHhCCC
Confidence 578888888 88999999999999999999975 478888876542 235567887
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
. ..|+++++ ++|++++...+. ...+++.+.|++
T Consensus 74 ~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~ 106 (109)
T PRK09381 74 R-----GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA 106 (109)
T ss_pred C-----cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHH
Confidence 6 67788888 699999888432 234566666654
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-09 Score=72.07 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=68.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++++||.|| ++||++|+...|.|.++.+++.+. +.++-|..|. ..+++..|+
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------------------------~~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------------------------VPDFNKMYE 65 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------------------------CHHHHHHcC
Confidence 3578888888 999999999999999999988643 5777777764 246677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+.+.+..+..+. ..+-+.+++.+..+
T Consensus 66 V~-----~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 66 LY-----DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred CC-----CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 87 56788888 699999998643221 24456677766654
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=72.16 Aligned_cols=87 Identities=13% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH-Hh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID-QL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~ 118 (181)
+||+++|.|| +.||++|+...+.+.++.+++++.++.+..|..|... ..+++ .|
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~------------------------~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ------------------------REFAKEEL 74 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc------------------------hhhHHhhc
Confidence 4788888888 9999999999999999999998767888888777511 12233 36
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
++. ..|+.++++++++..+.+.+ ...+.++++.
T Consensus 75 ~v~-----~~Pti~~f~~~~~~~~~y~g---~~~~~~~l~~ 107 (109)
T cd02993 75 QLK-----SFPTILFFPKNSRQPIKYPS---EQRDVDSLLM 107 (109)
T ss_pred CCC-----cCCEEEEEcCCCCCceeccC---CCCCHHHHHh
Confidence 765 56799999888776666622 1246666654
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-09 Score=69.74 Aligned_cols=85 Identities=11% Similarity=0.186 Sum_probs=60.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+|+ ++|.|| +.||++|+...|.+.++.+.++..++.+..|..+. +..++++|+
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~~~~~~~ 68 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------------------------EPGLSGRFF 68 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------------------------CHhHHHHcC
Confidence 566 568887 88999999999999999988765567776665432 234667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
+. ..|+++++ ++|++ ..+.+ ....+++.+.|+
T Consensus 69 i~-----~~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~ 100 (101)
T cd02994 69 VT-----ALPTIYHA-KDGVF-RRYQG----PRDKEDLISFIE 100 (101)
T ss_pred Cc-----ccCEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence 86 56788877 78986 44422 245566666654
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-09 Score=71.16 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=63.6
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--------CHHHHHHHHHH
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--------NEFVKLAWRRE 95 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--------~~~~~~~~~~~ 95 (181)
|.+| ++++|++++||++||+.. ++-|..-. +...|++++++|+++|+.|+++-.+ +.+++++|+..
T Consensus 8 ~~~G----~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~ 81 (108)
T PF00255_consen 8 DIDG----KPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKE 81 (108)
T ss_dssp BTTS----SEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCH
T ss_pred CCCC----CEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHh
Confidence 9999 999999999999999988 66788766 9999999999999999999999753 35667777776
Q ss_pred cCCCcccceeEEE
Q psy2878 96 NSNLYKLNHWQFS 108 (181)
Q Consensus 96 ~~~~~~~~~~~~~ 108 (181)
. ++..|+++.
T Consensus 82 ~---~~~~F~vf~ 91 (108)
T PF00255_consen 82 K---FGVTFPVFE 91 (108)
T ss_dssp C---HT-SSEEBS
T ss_pred c---cCCcccceE
Confidence 2 478888875
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.1e-09 Score=69.94 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=64.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.|++++|.|| +.||+.|....+.+.++.+++.. .+.++.|+.+.. .+.+++++|+
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~-----------------------~~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED-----------------------KNKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc-----------------------ccHHHHHHcC
Confidence 3678888888 88999999999999999988864 478888887752 1346777888
Q ss_pred CCCCCCcceeeEEEEcCCCc----EEEEEeccCCCCCCHHHHHHHH
Q psy2878 120 IRHETGVALRATFIFDPQNI----IQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~----i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+. ..|+.+++++.+. +...+. -....+++.+.|
T Consensus 72 i~-----~~Pt~~~~~~~~~~~~~~~~~~~----G~~~~~~l~~fi 108 (109)
T cd03002 72 VQ-----GFPTLKVFRPPKKASKHAVEDYN----GERSAKAIVDFV 108 (109)
T ss_pred CC-----cCCEEEEEeCCCccccccccccc----CccCHHHHHHHh
Confidence 87 5789999987763 333331 134666666654
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=72.11 Aligned_cols=88 Identities=9% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| +.||+.|+...+.|.++.+++.. ++.++.|..+. +.+++++|+
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA-------------------------ERELSARFR 103 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC-------------------------CHHHHHhcC
Confidence 4688888888 88999999999999999988764 47777775532 346778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++..+.+. ...+++.+.|+++
T Consensus 104 V~-----~~Ptlii~-~~G~~v~~~~G~----~~~e~l~~~l~~~ 138 (139)
T PRK10996 104 IR-----SIPTIMIF-KNGQVVDMLNGA----VPKAPFDSWLNEA 138 (139)
T ss_pred CC-----ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHHh
Confidence 87 56787776 599999887432 3445666666543
|
|
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=67.07 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++++|| +.||+.|....+.+.++.+++.. ++.++-|..+. +.++++.|+
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~-------------------------~~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE-------------------------DQEIAEAAG 64 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC-------------------------CHHHHHHCC
Confidence 3577888887 88999999999999999988864 47777776553 235666778
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+. ..|++++++ +|+++....
T Consensus 65 v~-----~vPt~~i~~-~g~~v~~~~ 84 (97)
T cd02949 65 IM-----GTPTVQFFK-DKELVKEIS 84 (97)
T ss_pred Ce-----eccEEEEEE-CCeEEEEEe
Confidence 76 678999995 899987774
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=67.96 Aligned_cols=87 Identities=9% Similarity=0.137 Sum_probs=59.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
+++.++|.|| ++||++|+...|.+.++.++++..+ +.+..+..+. ...+++.
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~ 67 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-------------------------YSSIASE 67 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-------------------------CHhHHhh
Confidence 3467777777 9999999999999999999997654 4444444332 2356778
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
|++. ..|+.++++ +|. ...+.+ ....+++.+.+++
T Consensus 68 ~~I~-----~~Pt~~l~~-~~~-~~~~~G----~~~~~~l~~~~~~ 102 (104)
T cd03000 68 FGVR-----GYPTIKLLK-GDL-AYNYRG----PRTKDDIVEFANR 102 (104)
T ss_pred cCCc-----cccEEEEEc-CCC-ceeecC----CCCHHHHHHHHHh
Confidence 8886 678999994 453 344422 2345666666654
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=67.10 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||+.|+...|.+.++.+++.. .+.+..|..+. +.++++.|+
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK-------------------------YESLCQQAN 70 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc-------------------------hHHHHHHcC
Confidence 3568888888 89999999999999999998853 46777776553 235667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+. ..|+.+++.+.|+.+..+.
T Consensus 71 i~-----~~Pt~~~~~~g~~~~~~~~ 91 (104)
T cd03004 71 IR-----AYPTIRLYPGNASKYHSYN 91 (104)
T ss_pred CC-----cccEEEEEcCCCCCceEcc
Confidence 76 5779999976658777774
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=68.27 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=54.6
Q ss_pred eEEEEEeeCCCCCCChhHHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 43 WKIFYFYPKDFTFVCPTEISEYNKLVKDFNE--RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 43 ~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~--~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.++|.|| +.||+.|+..+|.+.+++++++. ..+.++.|..+. +..+++.|++
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~~~v 71 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-------------------------HRELCSEFQV 71 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-------------------------ChhhHhhcCC
Confidence 4888887 88999999999999999999986 346666665442 2356677887
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
. ..|+.+++ ++|+.+..+.
T Consensus 72 ~-----~~Pt~~~~-~~g~~~~~~~ 90 (102)
T cd03005 72 R-----GYPTLLLF-KDGEKVDKYK 90 (102)
T ss_pred C-----cCCEEEEE-eCCCeeeEee
Confidence 6 56788888 6888877664
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=68.76 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||+.|+...|.+.++.++++. .+.+..|..+.. ..+++.|+
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-------------------------~~~~~~~~ 69 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-------------------------RMLCRSQG 69 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-------------------------HHHHHHcC
Confidence 4578888888 89999999999999999999875 377778887642 24566777
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+. ..|+.+++ ++|+.+..+
T Consensus 70 v~-----~~Pt~~~~-~~g~~~~~~ 88 (101)
T cd03003 70 VN-----SYPSLYVF-PSGMNPEKY 88 (101)
T ss_pred CC-----ccCEEEEE-cCCCCcccC
Confidence 75 56788888 788876555
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-08 Score=65.93 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=63.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC-cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN-AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
++++++|.|| ++||+.|+...+.+.++.+.++..+ +.++.+..+. +..+.+.|
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------------------------~~~~~~~~ 65 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-------------------------EKDLASRF 65 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-------------------------hHHHHHhC
Confidence 5788999998 8899999999999999988887653 5554444322 24666778
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
++. ..|+.+++++++. ...+.+ ....+++...|++
T Consensus 66 ~i~-----~~P~~~~~~~~~~-~~~~~g----~~~~~~l~~~i~~ 100 (102)
T TIGR01126 66 GVS-----GFPTIKFFPKGKK-PVDYEG----GRDLEAIVEFVNE 100 (102)
T ss_pred CCC-----cCCEEEEecCCCc-ceeecC----CCCHHHHHHHHHh
Confidence 886 5789999998877 444532 2445667776664
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=67.04 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=58.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-----CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-----NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
+++++|.|| +.||+.|+...|.+.++.+++++. .+.+..|.. |.+..++
T Consensus 18 ~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~-------------------------d~~~~l~ 71 (108)
T cd02996 18 AELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC-------------------------DKESDIA 71 (108)
T ss_pred CCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC-------------------------CCCHHHH
Confidence 577888887 999999999999999999888643 133333333 3345777
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
++|++. ..|+.+++ ++|++.... +. -..+.+++.+.
T Consensus 72 ~~~~v~-----~~Ptl~~~-~~g~~~~~~-~~--g~~~~~~l~~f 107 (108)
T cd02996 72 DRYRIN-----KYPTLKLF-RNGMMMKRE-YR--GQRSVEALAEF 107 (108)
T ss_pred HhCCCC-----cCCEEEEE-eCCcCccee-cC--CCCCHHHHHhh
Confidence 888887 66788888 789854322 11 13556666553
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.3e-08 Score=65.85 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
++++++|.|| ++||+.|+...+.+.++.+.+.+. .+.++.|..+.. .+..+.+.|
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~~ 71 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-----------------------EHDALKEEY 71 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-----------------------ccHHHHHhC
Confidence 4568888888 889999999999999999998753 355555554431 134677788
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
++. ..|+.++. ++|+++..+.
T Consensus 72 ~i~-----~~Pt~~~~-~~g~~~~~~~ 92 (104)
T cd02997 72 NVK-----GFPTFKYF-ENGKFVEKYE 92 (104)
T ss_pred CCc-----cccEEEEE-eCCCeeEEeC
Confidence 876 56675555 6899877663
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-08 Score=69.18 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=54.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHH--------HHHHHHHHcCCCcccceeEEEcCC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEF--------VKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~--------~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
.|+.++|+|+ ++|||+|+...|.|.++.++ .++.++-|..|... ++.++.+
T Consensus 22 ~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~----------------- 80 (122)
T TIGR01295 22 KKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRS----------------- 80 (122)
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHH-----------------
Confidence 3566778777 88999999999999999876 35778888887422 2233333
Q ss_pred chHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEecc
Q psy2878 112 GSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 112 ~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
.|++. ... ..|+.+++ ++|+.+.++.++
T Consensus 81 -----~~~i~~~i~--~~PT~v~~-k~Gk~v~~~~G~ 109 (122)
T TIGR01295 81 -----RFGIPTSFM--GTPTFVHI-TDGKQVSVRCGS 109 (122)
T ss_pred -----HcCCcccCC--CCCEEEEE-eCCeEEEEEeCC
Confidence 33322 111 35688888 699999988643
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-08 Score=70.87 Aligned_cols=80 Identities=9% Similarity=0.047 Sum_probs=58.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++++++|.|| ++||++|....|.+.++.+++...++.++.|..|... +++++|+
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-------------------------~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-------------------------NVAEKFR 99 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-------------------------HHHHHcC
Confidence 3567888888 8899999999999999999997767999999887633 2233344
Q ss_pred CCCCCC-cceeeEEEEcCCCcEEEEEec
Q psy2878 120 IRHETG-VALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~~~~g-~~~p~~~liD~~g~i~~~~~~ 146 (181)
+....+ ...|+.+++ ++|+.+.+..+
T Consensus 100 V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 100 VSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred ceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 430000 035788888 49999988864
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >KOG0910|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=6e-08 Score=69.14 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=65.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++||+|.|| +.||.+|....|.|+++..++.. .+++.-|..|. ..+++..|+
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~-------------------------~~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE-------------------------HPELAEDYE 112 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc-------------------------ccchHhhcc
Confidence 3579999999 99999999999999999999954 47777776664 356777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+. +.|+++++ ++|..+-+.++. .+.+.+.+.|++
T Consensus 113 I~-----avPtvlvf-knGe~~d~~vG~----~~~~~l~~~i~k 146 (150)
T KOG0910|consen 113 IS-----AVPTVLVF-KNGEKVDRFVGA----VPKEQLRSLIKK 146 (150)
T ss_pred ee-----eeeEEEEE-ECCEEeeeeccc----CCHHHHHHHHHH
Confidence 87 78899999 599998777532 233445555543
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.4e-08 Score=64.02 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=55.5
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| ++||+.|+...+.|.++.+++ ..++.++.|..+. ..+++++|++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~-------------------------~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE-------------------------LPEISEKFEI 66 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc-------------------------CHHHHHhcCC
Confidence 588888888 899999999999999998887 3356666665321 2467778888
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
. ..|+.+++ ++|+++.+..
T Consensus 67 ~-----~~Pt~~~~-~~g~~~~~~~ 85 (97)
T cd02984 67 T-----AVPTFVFF-RNGTIVDRVS 85 (97)
T ss_pred c-----cccEEEEE-ECCEEEEEEe
Confidence 6 56788888 4899988874
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.5e-08 Score=63.82 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=67.7
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++++||.|| +.||+.|....|.+.++.+++.. ++.++-|..+. +..+++.|++
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------------------------NKELCKKYGV 69 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------------------------SHHHHHHTTC
T ss_pred CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc-------------------------cchhhhccCC
Confidence 578888888 88999999999999999999987 78888887763 2356677888
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
. ..|+.+++ ++|+....+.+. .+.++|.+.|++
T Consensus 70 ~-----~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~ 102 (103)
T PF00085_consen 70 K-----SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIEK 102 (103)
T ss_dssp S-----SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHHH
T ss_pred C-----CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHHc
Confidence 6 56788888 488887766322 567888888875
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=65.73 Aligned_cols=88 Identities=7% Similarity=-0.011 Sum_probs=60.8
Q ss_pred CCeEEEEEeeCCCCCC--Ch--hHHHHHHHHHHHH-HhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 41 GKWKIFYFYPKDFTFV--CP--TEISEYNKLVKDF-NERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~--C~--~~~~~l~~l~~~~-~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
.+.++|.||+++||++ |+ ...|.|.++..++ ++.++.+.-|..|. +.+++
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------------------------~~~La 80 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------------------------DAKVA 80 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------------------------CHHHH
Confidence 3445555666889977 98 5667777777766 33467887777765 34677
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+.||+. ..|+.+++ ++|+++. +.+. ...+.+.+.|+++
T Consensus 81 ~~~~I~-----~iPTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~ 118 (120)
T cd03065 81 KKLGLD-----EEDSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL 118 (120)
T ss_pred HHcCCc-----cccEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence 788887 56788888 5999876 5332 3557777777765
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.8e-09 Score=71.45 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=56.5
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCc
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNG 112 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 112 (181)
.+..+..++|+++|.|| ++||++|+...+.+.+...... .+..++.|..|....
T Consensus 11 al~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~------------------------ 64 (117)
T cd02959 11 GIKEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE------------------------ 64 (117)
T ss_pred HHHHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC------------------------
Confidence 34445557899999998 8999999999999888765443 345666676654210
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
.....|++. |...|+++++|++|+++..+.
T Consensus 65 ~~~~~~~~~---g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 65 PKDEEFSPD---GGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred chhhhcccC---CCccceEEEECCCCCCchhhc
Confidence 011133332 213679999999999988654
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=64.53 Aligned_cols=78 Identities=14% Similarity=0.018 Sum_probs=58.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++++||.|| +.||++|+...|.+.++.+++.. .+.++-|..|.... | ..++++.|+
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~--------------------d-~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDV--------------------D-REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCcccc--------------------c-cHHHHHHCC
Confidence 5678999998 99999999999999999877532 36777787775211 0 235677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+. ..|+.+++ ++|+.+.+..+
T Consensus 70 I~-----~iPT~i~f-k~G~~v~~~~G 90 (103)
T PHA02278 70 IM-----STPVLIGY-KDGQLVKKYED 90 (103)
T ss_pred Cc-----cccEEEEE-ECCEEEEEEeC
Confidence 87 66788888 58999988854
|
|
| >KOG0907|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=64.42 Aligned_cols=85 Identities=14% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|.+|+.|+ ++||++|+...|.+.++..+|.+ +.++-|..|. . .++++.|+
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~----------------------~~~~~~~~ 71 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---L----------------------EEVAKEFN 71 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---C----------------------HhHHHhcC
Confidence 3588888887 99999999999999999999985 8888898886 1 25566777
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+. ..|+..++ ++|+.+....+ .+.+++.+.+++
T Consensus 72 V~-----~~PTf~f~-k~g~~~~~~vG-----a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 72 VK-----AMPTFVFY-KGGEEVDEVVG-----ANKAELEKKIAK 104 (106)
T ss_pred ce-----EeeEEEEE-ECCEEEEEEec-----CCHHHHHHHHHh
Confidence 76 56777666 79999988863 333455555543
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.3e-08 Score=63.69 Aligned_cols=73 Identities=12% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++.++|+|| +.||+.|+...+.+.++.+++. ++.++.|..+. ...+++.|+
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~-------------------------~~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE-------------------------LSEVAEKEN 68 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc-------------------------hHHHHHHCC
Confidence 3577888888 8899999999999999888654 56777665532 235777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+. ..|+.+++ ++|+++..+.+
T Consensus 69 v~-----~~Pt~~~~-~~g~~~~~~~G 89 (98)
T PTZ00051 69 IT-----SMPTFKVF-KNGSVVDTLLG 89 (98)
T ss_pred Cc-----eeeEEEEE-eCCeEEEEEeC
Confidence 86 56776555 79999988853
|
|
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-07 Score=62.20 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=63.3
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++.++|+|| +.||+.|+...+.|+++.+++.. ++.++.|..+. +..+.++|++
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE-------------------------NPDIAAKYGI 66 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC-------------------------CHHHHHHcCC
Confidence 467888888 88999999999999999888864 47888777553 2355677887
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
. ..|+.+++ ++|+++....+. .+.+++.+.|++
T Consensus 67 ~-----~~P~~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~ 99 (101)
T TIGR01068 67 R-----SIPTLLLF-KNGKEVDRSVGA----LPKAALKQLINK 99 (101)
T ss_pred C-----cCCEEEEE-eCCcEeeeecCC----CCHHHHHHHHHh
Confidence 6 67899999 689887666322 245666666654
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-06 Score=66.13 Aligned_cols=112 Identities=12% Similarity=0.120 Sum_probs=89.1
Q ss_pred CCCcccceeeeecCCC-CCCe-EEEEEee-----CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHc
Q psy2878 24 EENNVSAFKVITESSF-PGKW-KIFYFYP-----KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~-~gk~-~ll~F~~-----~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~ 96 (181)
..+| +++|+|+ .||. +||+.|. ..-||.|...+-.+.....-+..+++.++.||..+.+.+.+|+++.
T Consensus 53 g~~G-----~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rm 127 (211)
T PF05988_consen 53 GPDG-----PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRM 127 (211)
T ss_pred CCCC-----cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhc
Confidence 5565 5999996 7764 5555553 4569999999999988888899999999999999999999999998
Q ss_pred CCCcccceeEEEcCCchHHHHhCCC-C-CCCcceeeEEEEcCCCcEEEEEe
Q psy2878 97 SNLYKLNHWQFSDTNGSLIDQLGIR-H-ETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 97 ~~~~~~~~~~~~D~~~~~~~~~gv~-~-~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+..||.+|..+..+...|++. . ....+.-++|+-|. |+|-..+.
T Consensus 128 ----GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTys 173 (211)
T PF05988_consen 128 ----GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTYS 173 (211)
T ss_pred ----CCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEee
Confidence 999999999989999999985 2 22233336777775 88776664
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=98.71 E-value=8e-08 Score=64.50 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=56.5
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++++|.|| +.||+.|+...+.+.++.+.++. .++.++.|..+.+ ...++++|+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA------------------------NKDLAKKYG 72 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc------------------------chhhHHhCC
Confidence 568888888 88999999999999999999873 3466666665442 246677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+. ..|+.+++++.|+....+
T Consensus 73 i~-----~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 73 VS-----GFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred CC-----CcCEEEEEeCCCCCcccc
Confidence 86 678999998777665555
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.9e-07 Score=63.28 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=62.4
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHH-H--HHHHHHHHhcCcEEEEEecCCHHHHHH-HHHHcCCCcccceeEEEc
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISE-Y--NKLVKDFNERNAILLGGSSDNEFVKLA-WRRENSNLYKLNHWQFSD 109 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~-l--~~l~~~~~~~~~~vi~Is~d~~~~~~~-~~~~~~~~~~~~~~~~~D 109 (181)
+..+.-.+|+++|+|+ ++||+.|+..-.. + .++.+.+. +++.+|-|..+......+ +.+
T Consensus 8 l~~Ak~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~--------------- 70 (124)
T cd02955 8 FEKARREDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN--------------- 70 (124)
T ss_pred HHHHHHcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH---------------
Confidence 3334446899999987 9999999876553 2 34444443 355555555543222211 111
Q ss_pred CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCC----CCCCHHHHHHHHHhh
Q psy2878 110 TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLN----VGRNPIETLRILDAI 164 (181)
Q Consensus 110 ~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~----~~~~~~~ll~~l~~l 164 (181)
.....||+. ..|+++++|++|++++...+-.. ......++++.|+++
T Consensus 71 ---~~~~~~~~~-----G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 71 ---AAQAMTGQG-----GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred ---HHHHhcCCC-----CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 112245654 45799999999999998853211 123466777777654
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.5e-08 Score=63.17 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=60.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH-hcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN-ERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~-~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
++++++|.|| +.||+.|....+.+.++.+.++ ..++.++.|+.+. +..+.+.|
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------~~~~~~~~ 67 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-------------------------NNDLCSEY 67 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-------------------------hHHHHHhC
Confidence 3457888888 8899999999999999988885 3457777765443 24666778
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
++. ..|+.++++++|+....+.+. .+.+++.+
T Consensus 68 ~i~-----~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~ 99 (101)
T cd02961 68 GVR-----GYPTIKLFPNGSKEPVKYEGP----RTLESLVE 99 (101)
T ss_pred CCC-----CCCEEEEEcCCCcccccCCCC----cCHHHHHh
Confidence 876 678999999887555555221 35566554
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-07 Score=66.11 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=65.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++++||.|| ++||++|+...|.|.++.+++.+. +.|+-|.+|.. .+++..|+
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~-------------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEV-------------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCC-------------------------HHHHHHcC
Confidence 4578999998 899999999999999999888643 66677777752 35556677
Q ss_pred CCCCCCcceeeEEEEcCCCc-EEEEEeccC----CCCCCHHHHHHHHHhhccC
Q psy2878 120 IRHETGVALRATFIFDPQNI-IQHITVNNL----NVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~-i~~~~~~~~----~~~~~~~~ll~~l~~l~~~ 167 (181)
+. ..|+++++=++|+ .+.+..+.. ......+++++.++.+..+
T Consensus 75 I~-----~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 75 LY-----DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred cc-----CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 65 3456664447888 555554321 1134667777777666543
|
|
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=64.21 Aligned_cols=72 Identities=4% Similarity=0.055 Sum_probs=52.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH-HHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI-DQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~ 118 (181)
.+++++|.|| ++||++|+...|.+.++.+++++. +.+..|..+... .++ +.|
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~-------------------------~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ-------------------------GKCRKQK 80 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh-------------------------HHHHHhc
Confidence 3467888888 999999999999999999999753 777777766432 233 356
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
++. ..|+..++ ++|+....+
T Consensus 81 ~I~-----~~PTl~lf-~~g~~~~~y 100 (113)
T cd03006 81 HFF-----YFPVIHLY-YRSRGPIEY 100 (113)
T ss_pred CCc-----ccCEEEEE-ECCccceEE
Confidence 665 45677777 678765554
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=63.90 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCC-C-------------------
Q psy2878 64 YNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRH-E------------------- 123 (181)
Q Consensus 64 l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~-~------------------- 123 (181)
|.+..+++++.|+++++|+.++.+..++|++.. ..++++++|++..+.+.+|+.. .
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~----~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 77 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT----GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQS 77 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc----CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHH
Confidence 667788999999999999999997799999876 8999999999999999999861 1
Q ss_pred ---CC----------cceeeEEEEcCCCcEEEEEe
Q psy2878 124 ---TG----------VALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 124 ---~g----------~~~p~~~liD~~g~i~~~~~ 145 (181)
.+ .....+||+|++|+|+|.|.
T Consensus 78 ~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 78 AKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 00 11456899999999999995
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.6e-07 Score=61.68 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=63.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|.+||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|.. .++++.|+
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev-------------------------~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKV-------------------------PVYTQYFD 65 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEecccc-------------------------HHHHHhcC
Confidence 4688999998 889999999999999999999643 78888887752 24455566
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~l~ 165 (181)
+. +.|+++++ ++|+-.....+..+. -.+-+++++.++.+-
T Consensus 66 I~-----amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 66 IS-----YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred ce-----eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 64 45677666 466655555432211 134466777666543
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-07 Score=63.07 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=49.6
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-C-cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-N-AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~-~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
+++++|.|| +.||++|+...+.+.++.+++++. + +.+..|..+.. .+..+++.|
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~~ 74 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-----------------------ENVALCRDF 74 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-----------------------hhHHHHHhC
Confidence 368888888 889999999999999999988753 2 45545543321 123566778
Q ss_pred CCCCCCCcceeeEEEEcCCC
Q psy2878 119 GIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g 138 (181)
++. ..|+.+++.+..
T Consensus 75 ~i~-----~~Pt~~lf~~~~ 89 (114)
T cd02992 75 GVT-----GYPTLRYFPPFS 89 (114)
T ss_pred CCC-----CCCEEEEECCCC
Confidence 876 567999996555
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=80.84 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=66.4
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
+..+||+++|+|| ++||+.|+...+.. .++.++++ ++.++-|..+..+. .+.+
T Consensus 470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~---------------------~~~~ 525 (571)
T PRK00293 470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNA---------------------EDVA 525 (571)
T ss_pred HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCCh---------------------hhHH
Confidence 3446899999999 99999998776653 45666664 57777776654211 1246
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEE--EEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQ--HITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~--~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+.++|++. ..|+++++|++|+++ .++.+ ..+.+++++.+++++
T Consensus 526 l~~~~~v~-----g~Pt~~~~~~~G~~i~~~r~~G----~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 526 LLKHYNVL-----GLPTILFFDAQGQEIPDARVTG----FMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHcCCC-----CCCEEEEECCCCCCcccccccC----CCCHHHHHHHHHHhc
Confidence 67778876 567999999999985 34422 235678888887754
|
|
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=65.89 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=57.4
Q ss_pred CCCeEEEEEeeC-------CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCc
Q psy2878 40 PGKWKIFYFYPK-------DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNG 112 (181)
Q Consensus 40 ~gk~~ll~F~~~-------~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 112 (181)
+|++++|.|| + +||++|+...|.|.++.++++. ++.++-|..|... .+.|++.
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~------------------~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP------------------YWRDPNN 79 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc------------------cccCcch
Confidence 5789999999 6 8999999999999999988873 5889888887632 2234455
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEE
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQ 141 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~ 141 (181)
++++.|++. . ..|+.+++...++++
T Consensus 80 ~~~~~~~I~--~--~iPT~~~~~~~~~l~ 104 (119)
T cd02952 80 PFRTDPKLT--T--GVPTLLRWKTPQRLV 104 (119)
T ss_pred hhHhccCcc--c--CCCEEEEEcCCceec
Confidence 666777762 1 356888886555554
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.3e-07 Score=61.71 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=54.8
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.++++|+ +.||++|+...+.+.++.+++ ..+.+.-|..|.. .++++.|++.
T Consensus 23 ~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~-------------------------~~l~~~~~v~ 74 (113)
T cd02975 23 VDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDED-------------------------KEKAEKYGVE 74 (113)
T ss_pred eEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcC-------------------------HHHHHHcCCC
Confidence 44555554 899999999999999888775 3477777776641 2566778887
Q ss_pred CCCCcceeeEEEEcCC---CcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 122 HETGVALRATFIFDPQ---NIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~---g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
..|+.++.+.. |.++ +. +......+.+++++|
T Consensus 75 -----~vPt~~i~~~g~~~~~~~--~~-G~~~~~el~~~i~~i 109 (113)
T cd02975 75 -----RVPTTIFLQDGGKDGGIR--YY-GLPAGYEFASLIEDI 109 (113)
T ss_pred -----cCCEEEEEeCCeecceEE--EE-ecCchHHHHHHHHHH
Confidence 67888888643 3332 32 344444455555554
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-07 Score=69.71 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=61.3
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|+...|.+.++.++++. .+.+..|..+. +..++++|++
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~-------------------------~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATR-------------------------ALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc-------------------------cHHHHHHcCC
Confidence 467888888 89999999999999999998874 24444443321 2467788898
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. ..|++++++ +|+++....+ ....+++.+.+++.
T Consensus 105 ~-----~~PTl~~f~-~G~~v~~~~G----~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 105 K-----GYPTLLLFD-KGKMYQYEGG----DRSTEKLAAFALGD 138 (224)
T ss_pred C-----cCCEEEEEE-CCEEEEeeCC----CCCHHHHHHHHHHH
Confidence 7 567999997 8887655421 24556666665443
|
|
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=60.47 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=53.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|....+.|.++.+++. ++.++-|..+. + .+++.|++
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~-------------------------~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK-------------------------A-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh-------------------------h-HHHHhcCC
Confidence 478888888 8899999999999999988875 46555554442 1 34556777
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
. ..|+.+++ ++|+++.+..+
T Consensus 75 ~-----~~Pt~~~f-~~G~~v~~~~G 94 (113)
T cd02957 75 K-----VLPTLLVY-KNGELIDNIVG 94 (113)
T ss_pred C-----cCCEEEEE-ECCEEEEEEec
Confidence 5 56777777 68999988864
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.3e-07 Score=69.47 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=70.8
Q ss_pred ecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 35 TESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
.+.++.+++.|++||.+ .|+.|..+.|.|+.+.+++ |+.|+.||.|... -..|+-... +..+
T Consensus 114 ~l~~la~~~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~-------------~~~fp~~~~-~~g~ 175 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP-------------IPSFPNPRP-DPGQ 175 (215)
T ss_pred HHHHHhhCeEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC-------------CcCCCCCCC-CHHH
Confidence 34556678898998855 6999999999999998877 7999999999631 112222221 6778
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
++.||+. .+|++||+++++...+....+. -..++|++.
T Consensus 176 ~~~l~v~-----~~Pal~Lv~~~~~~~~pv~~G~---~s~~~L~~r 213 (215)
T PF13728_consen 176 AKRLGVK-----VTPALFLVNPNTKKWYPVSQGF---MSLDELEDR 213 (215)
T ss_pred HHHcCCC-----cCCEEEEEECCCCeEEEEeeec---CCHHHHHHh
Confidence 8899986 7899999999985544442221 234555544
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.7e-07 Score=59.60 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=58.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||+.|+...+.+.++.+++.. .+.+..+..+. +.+++++|++
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~-------------------------~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV-------------------------HQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc-------------------------hHHHHHHCCC
Confidence 456888888 89999999999999999988864 46666665532 3466778888
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
. ..|+++++++..+....+. ...+.+++.+.
T Consensus 71 ~-----~~P~~~~~~~~~~~~~~~~----g~~~~~~l~~~ 101 (103)
T cd03001 71 R-----GFPTIKVFGAGKNSPQDYQ----GGRTAKAIVSA 101 (103)
T ss_pred C-----ccCEEEEECCCCcceeecC----CCCCHHHHHHH
Confidence 6 5779999975434333331 13556666554
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-06 Score=58.63 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||++|+...+.|.++.+++. ++.++-|..+. ...++++|+
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~-------------------------~~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK-------------------------APFLVEKLN 72 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc-------------------------CHHHHHHCC
Confidence 3467888888 8999999999999999988875 46777666654 234667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+. ..|+.+++ ++|+++.+..+
T Consensus 73 v~-----~vPt~l~f-k~G~~v~~~~g 93 (113)
T cd02989 73 IK-----VLPTVILF-KNGKTVDRIVG 93 (113)
T ss_pred Cc-----cCCEEEEE-ECCEEEEEEEC
Confidence 76 67788888 59999988754
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.5e-07 Score=60.93 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=57.0
Q ss_pred CCCeEEEEEeeCCC--CCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDF--TFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~--cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.|.++||.|+ +.| ||.|....|.|.++.+++.+. +.++-|..|. +.+++..
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------------------------~~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------------------------EQALAAR 78 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------------------------CHHHHHH
Confidence 4566888888 665 999999999999999998753 5666666664 2366777
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
|++. ..|+.+++ ++|+++....+
T Consensus 79 f~V~-----sIPTli~f-kdGk~v~~~~G 101 (111)
T cd02965 79 FGVL-----RTPALLFF-RDGRYVGVLAG 101 (111)
T ss_pred cCCC-----cCCEEEEE-ECCEEEEEEeC
Confidence 8887 66788888 69999988853
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-06 Score=55.45 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=53.0
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
++++|+|| +.||+.|....+.++++.+. ..++.++.|+.+. +..+.+.|++.
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------------------------~~~~~~~~~v~ 62 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------------------------NPELAEEYGVR 62 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------------------------ChhHHHhcCcc
Confidence 67888887 88999999999999988877 4578888887664 23455667775
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 122 HETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
..|+.+++. +|+++..+.
T Consensus 63 -----~~P~~~~~~-~g~~~~~~~ 80 (93)
T cd02947 63 -----SIPTFLFFK-NGKEVDRVV 80 (93)
T ss_pred -----cccEEEEEE-CCEEEEEEe
Confidence 567888874 788777774
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-06 Score=73.08 Aligned_cols=93 Identities=9% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++++||.|| +.||++|....|.+.++.++++..++.++.|..|.... . ...+.|+
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---------------------~~~~~~~ 425 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---------------------FAKQELQ 425 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---------------------HHHHHcC
Confidence 5678888888 99999999999999999999987778888888874211 1 1223567
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++.+...-...+ . +..++.+.++..|+.+
T Consensus 426 I~-----~~PTii~Fk~g~~~~~~Y--~-~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 426 LG-----SFPTILFFPKHSSRPIKY--P-SEKRDVDSLMSFVNLL 462 (463)
T ss_pred CC-----ccceEEEEECCCCCceeC--C-CCCCCHHHHHHHHHhh
Confidence 65 567888885443211112 1 1247889998888865
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=72.57 Aligned_cols=93 Identities=10% Similarity=0.164 Sum_probs=66.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH-Hh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID-QL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~ 118 (181)
+++++||.|| +.||++|....+.+.++.+++...++.+..|..|... ..+++ .|
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~------------------------~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ------------------------KEFAKQEL 418 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc------------------------hHHHHhhC
Confidence 5678888888 9999999999999999999998778888888877311 12222 46
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++. ..|+++++.+..+-...+ .+..++.+.++..|+++.
T Consensus 419 ~I~-----~~PTil~f~~g~~~~v~Y---~~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 419 QLG-----SFPTILLFPKNSSRPIKY---PSEKRDVDSLLSFVNSLR 457 (457)
T ss_pred CCc-----eeeEEEEEeCCCCCeeec---CCCCcCHHHHHHHHHHhC
Confidence 665 567888885443321122 122578899999998763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-07 Score=70.53 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+-++|||.|| +.||++|..-+|.|.++..+++.+ +.+.-|+.|. +..++.+||
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------------------------~p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------------------------EPMVAAQFG 94 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------------------------chhHHHHhC
Confidence 4469999999 999999999999999999999753 5555555554 356778899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+. +.|++|++ ++|+-+.-+.
T Consensus 95 iq-----sIPtV~af-~dGqpVdgF~ 114 (304)
T COG3118 95 VQ-----SIPTVYAF-KDGQPVDGFQ 114 (304)
T ss_pred cC-----cCCeEEEe-eCCcCccccC
Confidence 87 77899999 7999998874
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=68.01 Aligned_cols=105 Identities=10% Similarity=0.173 Sum_probs=72.5
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
-.+.++..++.|++||. .-||.|....|.|+.+.+++ |+.+++||.|... ...||... ++..
T Consensus 143 ~~i~~la~~~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~-------------~p~fp~~~-~d~g 204 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL-------------IPGLPNSR-SDSG 204 (256)
T ss_pred HHHHHHHhceeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC-------------CCCCCCcc-CChH
Confidence 34455667899999995 46999999999999888777 7999999999731 11233322 2567
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.++.+|+. .+|++||++++.+..+...++. -..++|.+.|..+
T Consensus 205 qa~~l~v~-----~~Pal~Lv~~~t~~~~pv~~G~---iS~deL~~Ri~~v 247 (256)
T TIGR02739 205 QAQHLGVK-----YFPALYLVNPKSQKMSPLAYGF---ISQDELKERILNV 247 (256)
T ss_pred HHHhcCCc-----cCceEEEEECCCCcEEEEeecc---CCHHHHHHHHHHH
Confidence 78889986 6899999999955444332221 2345666555443
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=58.14 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=62.2
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcC
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDT 110 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~ 110 (181)
+..+.-++|+++|+|+ +.||+.|....... .++.+.+. .+..++.+..+.++ .
T Consensus 10 ~~~Ak~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~--------------------- 65 (114)
T cd02958 10 KQEAKSEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-G--------------------- 65 (114)
T ss_pred HHHHHhhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-H---------------------
Confidence 3444456898888888 88999997765442 33334443 34555555555432 1
Q ss_pred CchHHHHhCCCCCCCcceeeEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 111 NGSLIDQLGIRHETGVALRATFIFDP-QNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 111 ~~~~~~~~gv~~~~g~~~p~~~liD~-~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
..+++.|++. ..|+.++||+ +|++++...+. ...++++..|++.
T Consensus 66 -~~~~~~~~~~-----~~P~~~~i~~~~g~~l~~~~G~----~~~~~f~~~L~~~ 110 (114)
T cd02958 66 -QRFLQSYKVD-----KYPHIAIIDPRTGEVLKVWSGN----ITPEDLLSQLIEF 110 (114)
T ss_pred -HHHHHHhCcc-----CCCeEEEEeCccCcEeEEEcCC----CCHHHHHHHHHHH
Confidence 2345556665 5679999999 89999988533 3456777777654
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=57.43 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=86.6
Q ss_pred CccCccCCCcEEecccCCCCCC--CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHH-HHHHHHHHH-HHhcCcE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLP--EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEI-SEYNKLVKD-FNERNAI 77 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~--d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~-~~l~~l~~~-~~~~~~~ 77 (181)
+.+|.++|...+.+.+.- .|. +... ++++.+.+.||.-||..+.+. +....+. +-+..+.+. |.....+
T Consensus 1 ~~~~~~~p~V~v~d~Gel-~l~~~~~~y----~~W~s~~l~GKVrviq~iAGr--~sake~N~~l~~aik~a~f~~d~yq 73 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGEL-ILNGDKISY----QPWNSAQLPGKVRVIQHIAGR--SSAKEMNAPLIEAIKAAKFPHDKYQ 73 (160)
T ss_pred CcCCCcCCceEecCCceE-EEcCCcccc----cccCccccCCCEEEEEEeccC--CchhHhhHHHHHHHHHcCCCcccee
Confidence 467999999888743321 000 2334 677778899996655555332 2233332 333334333 4545566
Q ss_pred EEEEe-cCCH-----HHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC
Q psy2878 78 LLGGS-SDNE-----FVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV 150 (181)
Q Consensus 78 vi~Is-~d~~-----~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~ 150 (181)
..+|- .|+. .-.+..+++. ...++|. ++.|.++.+.+.|++.+ -..+++|+|++|+|++...+. -.
T Consensus 74 tttIiN~dDAi~gt~~fVrss~e~~--kk~~p~s~~vlD~~G~~~~aW~L~~----~~SaiiVlDK~G~V~F~k~G~-Ls 146 (160)
T PF09695_consen 74 TTTIINLDDAIWGTGGFVRSSAEDS--KKEFPWSQFVLDSNGVVRKAWQLQE----ESSAIIVLDKQGKVQFVKEGA-LS 146 (160)
T ss_pred EEEEEecccccccchHHHHHHHHHh--hhhCCCcEEEEcCCCceeccccCCC----CCceEEEEcCCccEEEEECCC-CC
Confidence 66553 4331 1112222221 1255666 67899999999999861 123788999999999999533 23
Q ss_pred CCCHHHHHHHHHh
Q psy2878 151 GRNPIETLRILDA 163 (181)
Q Consensus 151 ~~~~~~ll~~l~~ 163 (181)
..+.+++++.|++
T Consensus 147 ~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 147 PAEVQQVIALLKK 159 (160)
T ss_pred HHHHHHHHHHHhc
Confidence 4566777776653
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-06 Score=65.53 Aligned_cols=104 Identities=11% Similarity=0.114 Sum_probs=71.5
Q ss_pred cCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 36 ESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 36 l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
+.++.+++.|++||.+ -||.|....|.|+.+.+++ |+.|++||.|..- ...||... ++...+
T Consensus 138 i~~la~~~GL~fFy~s-~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~-------------~p~fp~~~-~d~gqa 199 (248)
T PRK13703 138 IAKLAEHYGLMFFYRG-QDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI-------------NPLLPDSR-TDQGQA 199 (248)
T ss_pred HHHHHhcceEEEEECC-CCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC-------------CCCCCCCc-cChhHH
Confidence 4566678999999954 6999999999999888777 7999999999731 12233321 245556
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
..+|+. ..|++||++++.+-.+-..++. -..+++.+.+..+.
T Consensus 200 ~~l~v~-----~~PAl~Lv~~~t~~~~pv~~G~---iS~deL~~Ri~~v~ 241 (248)
T PRK13703 200 QRLGVK-----YFPALMLVDPKSGSVRPLSYGF---ITQDDLAKRFLNVS 241 (248)
T ss_pred HhcCCc-----ccceEEEEECCCCcEEEEeecc---CCHHHHHHHHHHHH
Confidence 788886 6899999999964433332221 24466666665443
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.1e-06 Score=60.26 Aligned_cols=86 Identities=12% Similarity=0.034 Sum_probs=60.5
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+++||.|| +.||++|....+.|.++.+++. ++.++-|..+.. .++..|++.
T Consensus 84 ~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~--------------------------~l~~~f~v~ 134 (175)
T cd02987 84 TTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT--------------------------GASDEFDTD 134 (175)
T ss_pred cEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch--------------------------hhHHhCCCC
Confidence 47888887 8899999999999999998885 578877777631 233456665
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccC---CCCCCHHHHHHHHH
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNL---NVGRNPIETLRILD 162 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~---~~~~~~~~ll~~l~ 162 (181)
..|+.+++ ++|+++....+.. +.....++|-..|.
T Consensus 135 -----~vPTllly-k~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 135 -----ALPALLVY-KGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred -----CCCEEEEE-ECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 56788887 6999998886422 22334555555544
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-05 Score=51.33 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=51.0
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET 124 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~ 124 (181)
|..|| +.||+.|....+.|.++.+++.. .+.++-|..+.. .++++.||+.
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~-------------------------~~~~~~~~v~--- 52 (82)
T TIGR00411 3 IELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN-------------------------PQKAMEYGIM--- 52 (82)
T ss_pred EEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC-------------------------HHHHHHcCCc---
Confidence 34455 89999999999999999988864 367777765431 2345668876
Q ss_pred CcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 125 GVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 125 g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
..|+.++ +|+++ .. +. ...+++.+.|++
T Consensus 53 --~vPt~~~---~g~~~--~~-G~---~~~~~l~~~l~~ 80 (82)
T TIGR00411 53 --AVPAIVI---NGDVE--FI-GA---PTKEELVEAIKK 80 (82)
T ss_pred --cCCEEEE---CCEEE--Ee-cC---CCHHHHHHHHHh
Confidence 5677665 66642 21 11 244666666654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.5e-06 Score=55.35 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSD 84 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d 84 (181)
+++++|.|| +.||+.|....+.+.++.+.++. ..+.+..|..+
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 578888888 89999999999999999999876 34666666654
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.2e-06 Score=70.42 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=65.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.||.++|.|| +.||+.|+...|.+.++.+.+++. .+.+.-|..+. +...++.|
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------------------------~~~~~~~~ 427 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------------------------NETPLEEF 427 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------------------------CccchhcC
Confidence 4788999998 899999999999999999888764 34554454432 12334566
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++. ..|+.+++++++++...+.+ ....+.+.+.|++...
T Consensus 428 ~v~-----~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 428 SWS-----AFPTILFVKAGERTPIPYEG----ERTVEGFKEFVNKHAT 466 (477)
T ss_pred CCc-----ccCeEEEEECCCcceeEecC----cCCHHHHHHHHHHcCC
Confidence 665 46799999988876545532 2567888888877654
|
|
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=61.24 Aligned_cols=128 Identities=9% Similarity=0.053 Sum_probs=89.5
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc---CcEEEEEecCCHHHHHHH--HHHcCCCcccceeE
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER---NAILLGGSSDNEFVKLAW--RRENSNLYKLNHWQ 106 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~---~~~vi~Is~d~~~~~~~~--~~~~~~~~~~~~~~ 106 (181)
..-.+.+.+|+++||.+..+ +|..|..++.+|..|..+++++ ++.++.|+.....+...+ +++. ....+++
T Consensus 17 ~~~pm~~~~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r---~~~~ipV 92 (238)
T PF04592_consen 17 GQDPMLNSLGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR---VSEHIPV 92 (238)
T ss_pred CchHhhhcCCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh---CCCCCce
Confidence 34556778899888888855 7999999999999999999996 468888886543333322 2221 2445899
Q ss_pred EE-c-CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccCCcc
Q psy2878 107 FS-D-TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLC 170 (181)
Q Consensus 107 ~~-D-~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~~~ 170 (181)
+. | .+.+++..++-. .--.||+|+-|++.|...-+.+ .-...-+.++|+.......|
T Consensus 93 yqq~~~q~dvW~~L~G~------kdD~~iyDRCGrL~~~i~~P~S-~l~~~~ve~Ai~~ty~~~~C 151 (238)
T PF04592_consen 93 YQQDENQPDVWELLNGS------KDDFLIYDRCGRLTYHIPLPYS-FLQFPYVEAAIKSTYCEDPC 151 (238)
T ss_pred ecCCccccCHHHHhCCC------cCcEEEEeccCcEEEEecCcHH-HhcCHHHHHHHHHHHccccC
Confidence 86 3 558888888742 2357899999999998842222 22456677777777655555
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=68.37 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=63.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
+++.++|.|| +.||+.|....|.+.++.+.+++.+ +.+.-|..+ .+..+++.
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~-------------------------~~~~l~~~ 101 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT-------------------------EEMELAQE 101 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC-------------------------CCHHHHHh
Confidence 4677888887 8999999999999999988887654 444444332 23567788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
|++. ..|+.+++...+.+ .+.+ ..+.+++.+.++++..
T Consensus 102 ~~i~-----~~Pt~~~~~~g~~~--~y~g----~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 102 FGVR-----GYPTIKFFNKGNPV--NYSG----GRTADGIVSWIKKLTG 139 (477)
T ss_pred cCCC-----cccEEEEEECCceE--EecC----CCCHHHHHHHHHHhhC
Confidence 8886 56799999755444 3322 2567888888877654
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=67.01 Aligned_cols=91 Identities=13% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
++++++|.|| +.||+.|....+.+.++.+.+.+.+ +.++.|..+. +.++++.
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 70 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------------------------EKDLAQK 70 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------------------------cHHHHHh
Confidence 4677888887 8999999999999999999888765 6666665442 2467788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 118 LGIRHETGVALRATFIFDPQNII-QHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i-~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
|++. ..|+.+++ ++|+. +..+.+ ..+.+++.+.+.+...
T Consensus 71 ~~i~-----~~Pt~~~~-~~g~~~~~~~~g----~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 71 YGVS-----GYPTLKIF-RNGEDSVSDYNG----PRDADGIVKYMKKQSG 110 (462)
T ss_pred CCCc-----cccEEEEE-eCCccceeEecC----CCCHHHHHHHHHHhcC
Confidence 8886 56777777 57776 555532 2456777777766543
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG4498|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=59.42 Aligned_cols=130 Identities=12% Similarity=0.207 Sum_probs=95.9
Q ss_pred CCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCccc
Q psy2878 24 EENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKL 102 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 102 (181)
|..| +++.+.++ +.+..+|.|.+-.-|-.|+.+...|..+.+-+++.|+.+|+|..........|..+. .+
T Consensus 36 ~~rg----~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~----~f 107 (197)
T KOG4498|consen 36 DSRG----ESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT----YF 107 (197)
T ss_pred hhcC----ceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc----Cc
Confidence 5667 89999998 445788999988889999999999999988888899999999976655555655554 45
Q ss_pred ceeEEEcCCchHHHHhCCC-CC--------------------------CCcceeeEEEEcCCCcEEEEEeccCCCCC--C
Q psy2878 103 NHWQFSDTNGSLIDQLGIR-HE--------------------------TGVALRATFIFDPQNIIQHITVNNLNVGR--N 153 (181)
Q Consensus 103 ~~~~~~D~~~~~~~~~gv~-~~--------------------------~g~~~p~~~liD~~g~i~~~~~~~~~~~~--~ 153 (181)
.-.++.|++..+...++.. .. ++......+++.+.++|.+.|.. .+..+ +
T Consensus 108 ~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~d-k~~gD~~~ 186 (197)
T KOG4498|consen 108 SGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVD-KETGDHVP 186 (197)
T ss_pred ceeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEec-CCCCCCcC
Confidence 5578888876655444432 10 11235568899888899999973 33333 7
Q ss_pred HHHHHHHHH
Q psy2878 154 PIETLRILD 162 (181)
Q Consensus 154 ~~~ll~~l~ 162 (181)
++++++++.
T Consensus 187 i~~Vl~v~~ 195 (197)
T KOG4498|consen 187 IDSVLQVVG 195 (197)
T ss_pred HHHHHHHhh
Confidence 889988774
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-05 Score=55.26 Aligned_cols=96 Identities=7% Similarity=0.015 Sum_probs=54.5
Q ss_pred cCCCCCCeEEEEEeeCCCCCCChhHHHHH--HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 36 ESSFPGKWKIFYFYPKDFTFVCPTEISEY--NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 36 l~~~~gk~~ll~F~~~~~cp~C~~~~~~l--~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
.+.-.||+++|+|+ +.||+.|...-..+ .+-..++-+++ ++.|..+.... .. +.. +
T Consensus 18 ~Ak~~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~--Fv~V~l~~d~t-----d~-----~~~------~--- 75 (130)
T cd02960 18 KAKKSNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQED--FIMLNLVHETT-----DK-----NLS------P--- 75 (130)
T ss_pred HHHHCCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhC--eEEEEEEeccC-----CC-----CcC------c---
Confidence 33446899999977 99999998776654 22222333334 45555442110 00 111 0
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHh
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDA 163 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~ 163 (181)
.|. ..|+++++|++|+++....+-.+. ..+++.+.+..++
T Consensus 76 ----~g~------~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~ 121 (130)
T cd02960 76 ----DGQ------YVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKK 121 (130)
T ss_pred ----cCc------ccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHH
Confidence 111 357999999999998777532211 2456666665543
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=61.19 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=58.9
Q ss_pred CCCCCeEEEEEee--CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 38 SFPGKWKIFYFYP--KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 38 ~~~gk~~ll~F~~--~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
..++...++.|+. +.||++|....|.+.++.+++. ++++..+..|.++ +.+++
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~~-----------------------~~~l~ 70 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTPE-----------------------DKEEA 70 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCcc-----------------------cHHHH
Confidence 3444445666764 3999999999999999988884 4555566665421 34777
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEE-EEeccCCCCCCHHHHHHHH
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQH-ITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~-~~~~~~~~~~~~~~ll~~l 161 (181)
+.|++. ..|+.++++ +|+.+. ++.+ ......+.++++.+
T Consensus 71 ~~~~V~-----~~Pt~~~f~-~g~~~~~~~~G-~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 71 EKYGVE-----RVPTTIILE-EGKDGGIRYTG-IPAGYEFAALIEDI 110 (215)
T ss_pred HHcCCC-----ccCEEEEEe-CCeeeEEEEee-cCCHHHHHHHHHHH
Confidence 888887 667888876 677764 5532 33333333444333
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.2e-05 Score=59.34 Aligned_cols=137 Identities=8% Similarity=0.091 Sum_probs=82.4
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCC-CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-c--CcEEEEEe
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESS-FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-R--NAILLGGS 82 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~--~~~vi~Is 82 (181)
..|+|... +.+| +.+++.+ ++||..||..+...|...|...... ...++|.. . .+++|-|+
T Consensus 100 yFP~l~g~---------tL~g----~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In 164 (252)
T PF05176_consen 100 YFPNLQGK---------TLAG----NKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEIN 164 (252)
T ss_pred cCCCCccc---------cCCC----CCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEe
Confidence 35777777 7778 7887765 4899877766656666555444433 34445544 3 68999999
Q ss_pred cCCHHHHHHHHHHcCC---------CcccceeEEEcC--CchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCC
Q psy2878 83 SDNEFVKLAWRRENSN---------LYKLNHWQFSDT--NGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVG 151 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~---------~~~~~~~~~~D~--~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~ 151 (181)
.... -++.|+.+... ...-.+-+..+. ...+-+.+|+. ...+..+||||++|+|+++.. +....
T Consensus 165 ~~e~-~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~---N~~~GYvyLVD~~grIRWags-G~At~ 239 (252)
T PF05176_consen 165 LIEN-WLKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGIN---NSYVGYVYLVDPNGRIRWAGS-GPATP 239 (252)
T ss_pred cchH-HHHHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCC---CCCcCeEEEECCCCeEEeCcc-CCCCH
Confidence 7642 22333332210 012233333332 45777888886 223557999999999999985 33334
Q ss_pred CCHHHHHHHHHh
Q psy2878 152 RNPIETLRILDA 163 (181)
Q Consensus 152 ~~~~~ll~~l~~ 163 (181)
.+.+.+.+.++.
T Consensus 240 ~E~~~L~k~~~~ 251 (252)
T PF05176_consen 240 EELESLWKCVKG 251 (252)
T ss_pred HHHHHHHHHHhc
Confidence 455555555543
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.4e-05 Score=57.91 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=46.8
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCC
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE 123 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 123 (181)
+|++|| +.|||.|+...+.|.++.++|. ++.++-|..| |++.
T Consensus 20 ~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d---------------------------------~~V~-- 61 (204)
T PTZ00062 20 LVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA---------------------------------DANN-- 61 (204)
T ss_pred EEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc---------------------------------cCcc--
Confidence 555555 9999999999999999999886 4778777644 6665
Q ss_pred CCcceeeEEEEcCCCcEEEEEe
Q psy2878 124 TGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 124 ~g~~~p~~~liD~~g~i~~~~~ 145 (181)
..|+.+++ ++|+++.+..
T Consensus 62 ---~vPtfv~~-~~g~~i~r~~ 79 (204)
T PTZ00062 62 ---EYGVFEFY-QNSQLINSLE 79 (204)
T ss_pred ---cceEEEEE-ECCEEEeeee
Confidence 55677777 5999988875
|
|
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=55.21 Aligned_cols=85 Identities=15% Similarity=0.206 Sum_probs=60.5
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++++||.|| +.||+.|....+.|.++..++. .+.|+-|..+.. +..|++
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~----------------------------~~~~~i 150 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC----------------------------IPNYPD 150 (192)
T ss_pred CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh----------------------------HhhCCC
Confidence 357888888 8899999999999999999985 578887776521 124555
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCC---CCCHHHHHHHHH
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNV---GRNPIETLRILD 162 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~---~~~~~~ll~~l~ 162 (181)
. ..|+.+++ ++|+++...++...- ....+++-..|.
T Consensus 151 ~-----~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 151 K-----NLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred C-----CCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 4 46788887 799999988753222 334555555544
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.6e-05 Score=44.31 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=34.2
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
+.|| ..||+.|....+.+.++ ++...++.++.++.+.......
T Consensus 2 ~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 44 (69)
T cd01659 2 VLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEK 44 (69)
T ss_pred EEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhh
Confidence 4555 78999999999999988 5666789999999987655444
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00016 Score=46.07 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=26.4
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+.|| ++|||.|....+.+.++.+++.. .+.+ +..|
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~~-~~~~--~~v~ 37 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELGI-DAEF--EKVT 37 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcCC-CeEE--EEeC
Confidence 6677 79999999999999999888753 2444 4444
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00018 Score=54.34 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=69.4
Q ss_pred eeecCCC-CCCeE-EEE-Eee----CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCccccee
Q psy2878 33 VITESSF-PGKWK-IFY-FYP----KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHW 105 (181)
Q Consensus 33 ~~~l~~~-~gk~~-ll~-F~~----~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~ 105 (181)
+.+|+|+ .||.- ||+ |.+ ..-||.|...+-.+.-...-++.+++.+++||.-+.+++..+.++. +..|+
T Consensus 63 ~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm----GW~f~ 138 (247)
T COG4312 63 KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM----GWQFP 138 (247)
T ss_pred chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc----CCcce
Confidence 7889886 67643 333 222 2348888888888877777888899999999999999999999998 99999
Q ss_pred EEEcCCchHHHHhCCC
Q psy2878 106 QFSDTNGSLIDQLGIR 121 (181)
Q Consensus 106 ~~~D~~~~~~~~~gv~ 121 (181)
.+++.+..+-+.|.+.
T Consensus 139 w~Ss~~s~Fn~Df~vs 154 (247)
T COG4312 139 WVSSTDSDFNRDFQVS 154 (247)
T ss_pred eEeccCcccccccccc
Confidence 9999999999999774
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00031 Score=48.86 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
+.-.+|.++|+|+ +.||+.|......+ .++.+.+ ++++.++.+..+..+. .+
T Consensus 23 Ak~~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-----------------------~~ 77 (122)
T smart00594 23 ASRQRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-----------------------QR 77 (122)
T ss_pred HHhhcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-----------------------HH
Confidence 3346788988888 88999998776653 2333444 3456666666555432 34
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCC-----cEEEEEeccCCCCCCHHHHHHHH
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQN-----IIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g-----~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
++..|++. ..|+..++|++| .++... .-....++++..|
T Consensus 78 l~~~~~~~-----~~P~~~~l~~~~g~~~~~~~~~~----~G~~~~~~l~~~l 121 (122)
T smart00594 78 VSQFYKLD-----SFPYVAIVDPRTGQRVIEWVGVV----EGEISPEELMTFL 121 (122)
T ss_pred HHHhcCcC-----CCCEEEEEecCCCceeEEEeccc----cCCCCHHHHHHhh
Confidence 56667765 467999999997 233333 2223466666654
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0003 Score=43.30 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=25.6
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+..|+ +.|||.|....+.|+++.++. .++.+.-|..+
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~ 39 (67)
T cd02973 3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAA 39 (67)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc
Confidence 44555 889999988888887775543 35677666554
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=46.71 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=45.4
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
++++. +-+.+|.+.||+.|+...+.+.++.+++. ++.+..+..+.. .+++..
T Consensus 9 ~l~~p-v~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~-------------------------~e~a~~ 60 (89)
T cd03026 9 RLNGP-INFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF-------------------------QDEVEE 60 (89)
T ss_pred hcCCC-EEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC-------------------------HHHHHH
Confidence 45544 44555558999999988777777776553 466666655431 345567
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEE
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~ 143 (181)
||+. ..|+++ + ||++++.
T Consensus 61 ~~V~-----~vPt~v-i--dG~~~~~ 78 (89)
T cd03026 61 RGIM-----SVPAIF-L--NGELFGF 78 (89)
T ss_pred cCCc-----cCCEEE-E--CCEEEEe
Confidence 7876 566775 4 6888764
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00049 Score=43.60 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=43.2
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET 124 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~ 124 (181)
++.|+ +.||++|+...+.|.++. +.++-|. .|...+++++|++.
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~~vd-------------------------~~~~~~l~~~~~v~--- 45 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYVDVD-------------------------TDEGVELTAKHHIR--- 45 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEEeee-------------------------CCCCHHHHHHcCCc---
Confidence 45666 999999998777765431 1111111 23456788899987
Q ss_pred CcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 125 GVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 125 g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
..|+.+ +|+.+....+ ...+..++.+.|
T Consensus 46 --~~PT~~----~g~~~~~~~G---~~~~~~~l~~~~ 73 (75)
T PHA02125 46 --SLPTLV----NTSTLDRFTG---VPRNVAELKEKL 73 (75)
T ss_pred --eeCeEE----CCEEEEEEeC---CCCcHHHHHHHh
Confidence 566654 5777666632 234456665544
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00025 Score=45.70 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=36.7
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKL 90 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~ 90 (181)
.-.||+++|+|+ +.||+.|...-..+ .++.+.+. +++..+-|..+..+...
T Consensus 14 ~~~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~ 67 (82)
T PF13899_consen 14 KKEGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNA 67 (82)
T ss_dssp HHHTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHH
T ss_pred HHcCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhH
Confidence 335899999997 99999998877666 33333344 57888888887765544
|
... |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00023 Score=59.90 Aligned_cols=90 Identities=9% Similarity=0.110 Sum_probs=62.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.++.++|.|| +.||+.|....|.+.++.+.++.. ++.+..|..+..+ +..
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--------------------------~~~- 414 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--------------------------VPP- 414 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--------------------------cCC-
Confidence 3678888888 999999999999999999999873 5777777664310 111
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEE-EEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQ-HITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~-~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
|++. ..|+.++..+.++.. ..+.+ ....+++++.|++...
T Consensus 415 ~~i~-----~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 415 FEVE-----GFPTIKFVPAGKKSEPVPYDG----DRTLEDFSKFIAKHAT 455 (462)
T ss_pred CCcc-----ccCEEEEEeCCCCcCceEecC----cCCHHHHHHHHHhcCC
Confidence 4444 467999997665531 22211 3567889988876654
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00031 Score=46.86 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=35.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
|+++++.|+ +.||+.|....+.+.++.++++.+ +.++-|..+.
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~ 54 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD 54 (103)
T ss_pred CCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh
Confidence 688888887 889999999999999999999843 6666665554
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=47.89 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=39.9
Q ss_pred ecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 35 TESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
.....+++++++.|| +.||+.|...++.+.++.+++.. .+.++.|...
T Consensus 26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 333444788889888 99999999999999999999986 6788888885
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=51.55 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=43.7
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
+.+..+..+++|. .+|||.|...+|.|.++.+... ++.+=.|+.|. ..+.+.++ +.
T Consensus 37 ~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~---~~el~~~~-----------------lt- 92 (129)
T PF14595_consen 37 KSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDE---NKELMDQY-----------------LT- 92 (129)
T ss_dssp HT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHH---HHHHTTTT-----------------TT-
T ss_pred HhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecC---ChhHHHHH-----------------Hh-
Confidence 3444455666665 8999999999999999998754 45555555543 22323222 00
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
.| +...|+.+++|.+|+++.++
T Consensus 93 -~g-----~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 93 -NG-----GRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp --S-----S--SSEEEEE-TT--EEEEE
T ss_pred -CC-----CeecCEEEEEcCCCCEeEEE
Confidence 22 23578999999999999998
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0039 Score=47.59 Aligned_cols=81 Identities=11% Similarity=0.001 Sum_probs=45.8
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+++.|..|++.||++|+...+.++++..+. .++.+.-|..+. +.++++.|++.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~-------------------------~~~~~~~~~V~ 185 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAN--DKILGEMIEANE-------------------------NPDLAEKYGVM 185 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCC-------------------------CHHHHHHhCCc
Confidence 455555444999999987666665554432 234444333332 34566778886
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
..|++++. .+|+. +. +. ...+++.+.|.
T Consensus 186 -----~vPtl~i~-~~~~~---~~-G~---~~~~~l~~~l~ 213 (215)
T TIGR02187 186 -----SVPKIVIN-KGVEE---FV-GA---YPEEQFLEYIL 213 (215)
T ss_pred -----cCCEEEEe-cCCEE---EE-CC---CCHHHHHHHHH
Confidence 56676654 56763 32 22 23456666554
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=44.66 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=70.9
Q ss_pred cCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 36 ESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 36 l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
|+++++| .+||+|=++.--+.-..++..|.+....+.++++.++.|..+...... .++-...-..+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~-------------~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG-------------KPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc-------------CcCCHHHHHHH
Confidence 5566664 577777444444445567777877778889999999988665432211 11111112566
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.+.|++. . ...+.+||++||.+..++. .+ -+.+++.+.|.++.
T Consensus 70 r~~l~~~-~---~~f~~vLiGKDG~vK~r~~--~p--~~~~~lf~~ID~MP 112 (118)
T PF13778_consen 70 RKRLRIP-P---GGFTVVLIGKDGGVKLRWP--EP--IDPEELFDTIDAMP 112 (118)
T ss_pred HHHhCCC-C---CceEEEEEeCCCcEEEecC--CC--CCHHHHHHHHhCCc
Confidence 6777764 1 1247899999999998872 22 47899999998765
|
|
| >KOG0190|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0032 Score=53.57 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=62.1
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
..+++-|| +.||..|....|.+.+..+.+.+.+-.+-..-+|..+ +..++.+|++.
T Consensus 43 ~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~-----------------------~~~~~~~y~v~ 98 (493)
T KOG0190|consen 43 EFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE-----------------------ESDLASKYEVR 98 (493)
T ss_pred ceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch-----------------------hhhhHhhhcCC
Confidence 45667777 9999999999999999999998874333333334322 24666778886
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
|+ |+.-+. +||+....+ +-.+..+.|+..+++-.
T Consensus 99 ---gy--PTlkiF-rnG~~~~~Y----~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 99 ---GY--PTLKIF-RNGRSAQDY----NGPREADGIVKWLKKQS 132 (493)
T ss_pred ---CC--CeEEEE-ecCCcceec----cCcccHHHHHHHHHhcc
Confidence 54 465555 799983333 22478899999987654
|
|
| >PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols [] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0004 Score=38.59 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.1
Q ss_pred cCCccccCCCCCCCCC
Q psy2878 166 TGKLCACNRTLNGKTL 181 (181)
Q Consensus 166 ~~~~~~~~~~~~~~~~ 181 (181)
.+..||+||.+|+++|
T Consensus 8 ~~v~tPanW~pGd~~i 23 (40)
T PF10417_consen 8 HGVATPANWKPGDDVI 23 (40)
T ss_dssp HSSBBCTTTCTTSGEB
T ss_pred hCcccCcCCCCCCCeE
Confidence 4689999999999976
|
The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C .... |
| >KOG0908|consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0023 Score=49.55 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=36.2
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+...+|.++|.|. +.||.+|....|.+..+..+|. +..++=|.+|
T Consensus 17 s~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd 61 (288)
T KOG0908|consen 17 SAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVD 61 (288)
T ss_pred hccCceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHH
Confidence 3334689999998 8899999999999999999995 5666666554
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0094 Score=41.13 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=59.1
Q ss_pred ecCCCCCCeEEEEEeeCC----CCCCChhHH--HHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 35 TESSFPGKWKIFYFYPKD----FTFVCPTEI--SEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~----~cp~C~~~~--~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
..+.-.+|.++|+++ +. ||..|+..+ +.+.+. + +.++.+++.++...+.
T Consensus 11 ~~ak~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~---l-n~~fv~w~~dv~~~eg-------------------- 65 (116)
T cd02991 11 NDAKQELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEY---I-NTRMLFWACSVAKPEG-------------------- 65 (116)
T ss_pred HHHHhhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHH---H-HcCEEEEEEecCChHH--------------------
Confidence 334446799999998 55 667775544 233333 2 3467777777766541
Q ss_pred cCCchHHHHhCCCCCCCcceeeEEEE---cCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 109 DTNGSLIDQLGIRHETGVALRATFIF---DPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 109 D~~~~~~~~~gv~~~~g~~~p~~~li---D~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.+++..+++. ..|+..+| +.+..++.+..+. ...++++..|+...
T Consensus 66 ---~~la~~l~~~-----~~P~~~~l~~~~~~~~vv~~i~G~----~~~~~ll~~L~~~~ 113 (116)
T cd02991 66 ---YRVSQALRER-----TYPFLAMIMLKDNRMTIVGRLEGL----IQPEDLINRLTFIM 113 (116)
T ss_pred ---HHHHHHhCCC-----CCCEEEEEEecCCceEEEEEEeCC----CCHHHHHHHHHHHH
Confidence 4677778876 56788888 6666677776433 35677777776543
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.016 Score=45.37 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=21.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVK 69 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~ 69 (181)
.+|++|.+|. -..||+|+.....+.++.+
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhh
Confidence 4577777776 6679999988888776554
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.071 Score=37.62 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=32.8
Q ss_pred CchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 111 NGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 111 ~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+.+++.+||+. ..|+.+++ ++|+++....+. ..-+++++.|+++.
T Consensus 80 ~~~LA~~fgV~-----siPTLl~F-kdGk~v~~i~G~----~~k~~l~~~I~~~L 124 (132)
T PRK11509 80 SEAIGDRFGVF-----RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLV 124 (132)
T ss_pred CHHHHHHcCCc-----cCCEEEEE-ECCEEEEEEeCc----CCHHHHHHHHHHHh
Confidence 46788899997 67788888 699999888532 33466777776554
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.071 Score=38.61 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=63.7
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
-.+|++++.|= +..|+.|...-..+ .++++.+.. .+.++-+.......+.- .. +-. .-.-...+++
T Consensus 40 ~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f-~~------g~k--ee~~s~~ELa 108 (182)
T COG2143 40 PNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLF-KV------GDK--EEKMSTEELA 108 (182)
T ss_pred ccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEe-ec------Cce--eeeecHHHHH
Confidence 46789988886 67799996654443 445555544 45555555433221111 11 101 1111236999
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+-|+|. ++|+.++.|++|+-++... +.-+ .++.+..++-..
T Consensus 109 ~kf~vr-----stPtfvFfdk~Gk~Il~lP-GY~p---pe~Fl~vlkYVa 149 (182)
T COG2143 109 QKFAVR-----STPTFVFFDKTGKTILELP-GYMP---PEQFLAVLKYVA 149 (182)
T ss_pred HHhccc-----cCceEEEEcCCCCEEEecC-CCCC---HHHHHHHHHHHH
Confidence 999998 8899999999999988773 2222 345555554443
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.016 Score=50.00 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=56.5
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHH-HHHHHHHHHhcCcEEEEEe--cCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISE-YNKLVKDFNERNAILLGGS--SDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~-l~~l~~~~~~~~~~vi~Is--~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
-++|+++|.|+ ++||-.|+..-+. +.+-+..++-.|+..+=+. .++++ ..+..
T Consensus 472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~-~~~lL---------------------- 527 (569)
T COG4232 472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPA-ITALL---------------------- 527 (569)
T ss_pred CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHH-HHHHH----------------------
Confidence 35569999999 9999999765444 4455555555666665443 33332 23333
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
++||+. ..|++++++++|.-.-.. +-.-+.+.+++.++..
T Consensus 528 k~~~~~-----G~P~~~ff~~~g~e~~~l----~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 528 KRLGVF-----GVPTYLFFGPQGSEPEIL----TGFLTADAFLEHLERA 567 (569)
T ss_pred HHcCCC-----CCCEEEEECCCCCcCcCC----cceecHHHHHHHHHHh
Confidence 345554 346889999888865442 1122456666666543
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.051 Score=33.16 Aligned_cols=32 Identities=6% Similarity=0.089 Sum_probs=22.4
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+|.+.|||.|....+.|. +.++.+.-+..+.
T Consensus 3 ~lf~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~ 34 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLT-------SKGIAFEEIDVEK 34 (74)
T ss_pred EEEcCCCChhHHHHHHHHH-------HCCCeEEEEeccC
Confidence 3455899999987665543 3578887777765
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.053 Score=39.67 Aligned_cols=105 Identities=10% Similarity=-0.001 Sum_probs=46.3
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHH-H--HHHHHHHHhcCcEEEEEecCC--HHHHHHHHHHcCCCcccceeEEE
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISE-Y--NKLVKDFNERNAILLGGSSDN--EFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~-l--~~l~~~~~~~~~~vi~Is~d~--~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
+..+.-.+|+++|.+. ..||.-|..+... + .++.+.+. + .+|.|-+|. ..++......+
T Consensus 30 ~~~Ak~e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN-~--~FI~VkvDree~Pdid~~y~~~------------ 93 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLN-R--NFIPVKVDREERPDIDKIYMNA------------ 93 (163)
T ss_dssp HHHHHHHT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHH-H--H-EEEEEETTT-HHHHHHHHHH------------
T ss_pred HHHHHhcCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHh-C--CEEEEEeccccCccHHHHHHHH------------
Confidence 4444446788888887 7799999755432 2 11222222 2 244444432 11221111110
Q ss_pred cCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC----CCCHHHHHHHHHhh
Q psy2878 109 DTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV----GRNPIETLRILDAI 164 (181)
Q Consensus 109 D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~----~~~~~~ll~~l~~l 164 (181)
.....|.. .+|.+++++|+|+..+...|-.+. .....++++.|.++
T Consensus 94 -----~~~~~~~g-----GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 94 -----VQAMSGSG-----GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp -----HHHHHS--------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred -----HHHhcCCC-----CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 00111322 477999999999999988653322 12455666655544
|
; PDB: 3IRA_A. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.047 Score=33.94 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=20.8
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
..|+ +.|||.|+...+.|.+ .++.+-.|..+..
T Consensus 3 ~ly~-~~~C~~C~~~~~~L~~-------~~~~~~~idi~~~ 35 (77)
T TIGR02200 3 TVYG-TTWCGYCAQLMRTLDK-------LGAAYEWVDIEED 35 (77)
T ss_pred EEEE-CCCChhHHHHHHHHHH-------cCCceEEEeCcCC
Confidence 3444 8899999976665543 3555555665543
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.091 Score=35.55 Aligned_cols=77 Identities=6% Similarity=0.074 Sum_probs=47.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.++++|+=+ ++.||....-+.+|.+.++...+. +.++-|-+-....+ ...++..|||
T Consensus 19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~v---------------------Sn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRPV---------------------SNAIAEDFGV 75 (105)
T ss_dssp -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHH---------------------HHHHHHHHT-
T ss_pred cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCchh---------------------HHHHHHHhCC
Confidence 466666555 667887777777777777666554 77777766543222 3578888998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
.. ..|..+|| ++|++++.-.
T Consensus 76 ~H----eSPQ~ili-~~g~~v~~aS 95 (105)
T PF11009_consen 76 KH----ESPQVILI-KNGKVVWHAS 95 (105)
T ss_dssp -------SSEEEEE-ETTEEEEEEE
T ss_pred Cc----CCCcEEEE-ECCEEEEECc
Confidence 71 15899999 5999998875
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >KOG0190|consensus | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.018 Score=49.06 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=35.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+|-+||-|| +.||.+|....|.+++|.+.|++. -.++..-+|.
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~-~~vviAKmDa 426 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD-ENVVIAKMDA 426 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC-CCcEEEEecc
Confidence 4688999999 999999999999999999999984 2444444443
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.028 Score=38.99 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=45.4
Q ss_pred CCCeEEEEEeeC------CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 40 PGKWKIFYFYPK------DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 40 ~gk~~ll~F~~~------~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
.|+++.|+|+.+ +|||.|....|.+.+...... .+..+|-|.+.+. ..|... +.+ .+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r---~~Wkdp-------~n~------fR 80 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR---PEWKDP-------NNP------FR 80 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H---HHHC-T-------TSH------HH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH---HHhCCC-------CCC------ce
Confidence 467888888744 699999999999999887743 4788888887754 244321 111 12
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcE
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNII 140 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i 140 (181)
....+.+. ..|+.+-.+..+++
T Consensus 81 ~~p~~~l~-----~IPTLi~~~~~~rL 102 (119)
T PF06110_consen 81 TDPDLKLK-----GIPTLIRWETGERL 102 (119)
T ss_dssp H--CC--------SSSEEEECTSS-EE
T ss_pred Ecceeeee-----ecceEEEECCCCcc
Confidence 22245554 45688888766553
|
; PDB: 1V9W_A 1WOU_A. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.35 Score=30.37 Aligned_cols=69 Identities=9% Similarity=0.119 Sum_probs=38.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceee
Q psy2878 51 KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRA 130 (181)
Q Consensus 51 ~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~ 130 (181)
+..||.|......++++..++ ++.+=.+..... .++ ..||+. ..|+
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~-------------------------~~~-~~ygv~-----~vPa 52 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDF-------------------------EEI-EKYGVM-----SVPA 52 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTH-------------------------HHH-HHTT-S-----SSSE
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCH-------------------------HHH-HHcCCC-----CCCE
Confidence 666999997777776666555 344422222211 122 568887 6677
Q ss_pred EEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 131 TFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 131 ~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
. +| ||++++.. . ....+++.++|
T Consensus 53 l-vI--ng~~~~~G--~---~p~~~el~~~l 75 (76)
T PF13192_consen 53 L-VI--NGKVVFVG--R---VPSKEELKELL 75 (76)
T ss_dssp E-EE--TTEEEEES--S-----HHHHHHHHH
T ss_pred E-EE--CCEEEEEe--c---CCCHHHHHHHh
Confidence 7 66 48887555 1 13445555554
|
... |
| >KOG0191|consensus | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.26 Score=40.93 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=27.6
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE 73 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~ 73 (181)
+++.++.|| +.||..|....+.+.++...++.
T Consensus 47 ~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~ 78 (383)
T KOG0191|consen 47 DSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG 78 (383)
T ss_pred CCceEEEEE-CCCCcchhhhchHHHHHHHHhcC
Confidence 467888888 88999999999999988888875
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.1 Score=32.98 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=23.9
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+.|+ +.|||.|....+.|.++. .. ..+.++-|+.+.
T Consensus 2 ~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~ 37 (84)
T TIGR02180 2 VVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLS 37 (84)
T ss_pred EEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCC
Confidence 3444 899999998887777765 11 126677776653
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.6 Score=36.16 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=25.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
.|+.+|+.|. -..||+|+...+.+.++. +.++.+.-
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~----~~~v~v~~ 141 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYN----ALGITVRY 141 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHh----cCCeEEEE
Confidence 4677777776 667999998887776553 34565544
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.27 Score=33.89 Aligned_cols=95 Identities=11% Similarity=0.091 Sum_probs=53.3
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.+.+||-|+ ++| |.|.. .+...++..++.+.. +.+--|..++.... .+.+++.+|
T Consensus 18 ~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~--------------------~~~~L~~~y 74 (116)
T cd03007 18 FKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEK--------------------LNMELGERY 74 (116)
T ss_pred CCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccch--------------------hhHHHHHHh
Confidence 467888887 855 55554 577888888886643 33333333321100 124688888
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
||... | .|+.+++. +|.-.....+. ..++..+.|++.|.+
T Consensus 75 ~I~~~-g--yPTl~lF~-~g~~~~~~~Y~-G~~r~~~~lv~~v~~ 114 (116)
T cd03007 75 KLDKE-S--YPVIYLFH-GGDFENPVPYS-GADVTVDALQRFLKG 114 (116)
T ss_pred CCCcC-C--CCEEEEEe-CCCcCCCccCC-CCcccHHHHHHHHHh
Confidence 87411 3 46888885 55311001112 123788999888865
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.15 Score=32.31 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=23.1
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
|...|||.|......|. +.|+.+.-+..+......+
T Consensus 13 y~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~ 48 (79)
T TIGR02190 13 FTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRS 48 (79)
T ss_pred EECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHH
Confidence 34889999986654443 4577777777765433333
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >KOG3425|consensus | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.12 Score=35.74 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=35.5
Q ss_pred CCC-CCCeEEEEEeeC-------CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 37 SSF-PGKWKIFYFYPK-------DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 37 ~~~-~gk~~ll~F~~~-------~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+++ +|+.+.+.|..+ +|||.|..-.|-+.+..+.+. .++.+|-+-+.+
T Consensus 20 ~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 20 KNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGN 75 (128)
T ss_pred HHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecC
Confidence 344 567788888755 499999999999888877444 367777777665
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.29 Score=29.64 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=20.3
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+|...|||.|......|. +.++.+..+..+.
T Consensus 4 l~~~~~c~~c~~~~~~l~-------~~~i~~~~~~i~~ 34 (73)
T cd02976 4 VYTKPDCPYCKATKRFLD-------ERGIPFEEVDVDE 34 (73)
T ss_pred EEeCCCChhHHHHHHHHH-------HCCCCeEEEeCCC
Confidence 344889999986544333 3467777777665
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.32 Score=29.21 Aligned_cols=39 Identities=5% Similarity=-0.169 Sum_probs=23.4
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
|...|||.|+.....|.+ .++.+.-+..+......++..
T Consensus 5 y~~~~Cp~C~~~~~~L~~-------~~i~~~~~di~~~~~~~~~l~ 43 (72)
T cd02066 5 FSKSTCPYCKRAKRLLES-------LGIEFEEIDILEDGELREELK 43 (72)
T ss_pred EECCCCHHHHHHHHHHHH-------cCCcEEEEECCCCHHHHHHHH
Confidence 348899999866554443 356666666655443444333
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >KOG0912|consensus | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.3 Score=39.26 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=54.1
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
..++|.|+ +.||+..+...|.+.+..+.++++- -++|--.+| +|.+..++..|.
T Consensus 14 elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VD-----------------------cd~e~~ia~ky~ 69 (375)
T KOG0912|consen 14 ELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVD-----------------------CDKEDDIADKYH 69 (375)
T ss_pred eEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcc-----------------------cchhhHHhhhhc
Confidence 46777777 9999999999999998888887641 223222233 222345666666
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. -.|+.=|+ .+|.+..+- ....+.++.+.+-|++.
T Consensus 70 I~-----KyPTlKvf-rnG~~~~rE---YRg~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 70 IN-----KYPTLKVF-RNGEMMKRE---YRGQRSVEALIEFIEKQ 105 (375)
T ss_pred cc-----cCceeeee-eccchhhhh---hccchhHHHHHHHHHHH
Confidence 64 34555555 467665433 12235666666666543
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.27 Score=36.83 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=22.8
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHH
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNK 66 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~ 66 (181)
+.+..-.+++.+++|+ ...||+|....+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 4443334677777776 6789999988887766
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.34 Score=28.76 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=25.9
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRE 95 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~ 95 (181)
.|...+||.|...... +++.|+.+-.+..+.....++...+
T Consensus 3 vy~~~~C~~C~~~~~~-------L~~~~i~y~~~dv~~~~~~~~~l~~ 43 (60)
T PF00462_consen 3 VYTKPGCPYCKKAKEF-------LDEKGIPYEEVDVDEDEEAREELKE 43 (60)
T ss_dssp EEESTTSHHHHHHHHH-------HHHTTBEEEEEEGGGSHHHHHHHHH
T ss_pred EEEcCCCcCHHHHHHH-------HHHcCCeeeEcccccchhHHHHHHH
Confidence 3447899999754433 4666888888887765444443443
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.34 Score=31.01 Aligned_cols=37 Identities=8% Similarity=-0.085 Sum_probs=26.5
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
..|...|||.|..-...|.++..++ .++.+.-|..+.
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 3345889999998888888877654 366666666653
|
|
| >KOG0191|consensus | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.56 Score=38.97 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=33.3
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSD 84 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d 84 (181)
+..++.|| +.||++|...++.+.++...+.. .++.+..+..+
T Consensus 163 ~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 163 ADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred cceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 34666665 99999999999999999998874 56777777666
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=93.04 E-value=1 Score=39.39 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=45.7
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+++-|-.|.+.+||.|+.....++++..+.. ++..-.|..... .+++..|+++
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~-------------------------~~~~~~~~v~ 528 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHF-------------------------PDLKDEYGIM 528 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECccc-------------------------HHHHHhCCce
Confidence 4555555558999999876666665554433 344444433321 3555677776
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+.|+++| ||++++.. . ...+++++.|
T Consensus 529 -----~vP~~~i---~~~~~~~G--~----~~~~~~~~~~ 554 (555)
T TIGR03143 529 -----SVPAIVV---DDQQVYFG--K----KTIEEMLELI 554 (555)
T ss_pred -----ecCEEEE---CCEEEEee--C----CCHHHHHHhh
Confidence 6677665 46665433 1 2556666654
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.61 Score=30.90 Aligned_cols=47 Identities=2% Similarity=-0.207 Sum_probs=25.2
Q ss_pred CCeEEEEEee---CCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 41 GKWKIFYFYP---KDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 41 gk~~ll~F~~---~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
.+.++|+--. .+|||.|...... +.+.|+.+.-+..+.....++.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~l-------L~~~~i~~~~~di~~~~~~~~~l~ 60 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQI-------LKACGVPFAYVNVLEDPEIRQGIK 60 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHH-------HHHcCCCEEEEECCCCHHHHHHHH
Confidence 3456666432 2689999754433 344466666666644333333333
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.48 Score=32.16 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=10.7
Q ss_pred CCCCCCChhHHHHHH
Q psy2878 51 KDFTFVCPTEISEYN 65 (181)
Q Consensus 51 ~~~cp~C~~~~~~l~ 65 (181)
.+|||+|..-...|.
T Consensus 20 ~~~CPyC~~ak~~L~ 34 (108)
T PHA03050 20 KFTCPFCRNALDILN 34 (108)
T ss_pred CCCChHHHHHHHHHH
Confidence 889999975554443
|
|
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.16 Score=35.75 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
++.+|+.|+ ..+||.|....+.+.++..++.+..+.+..+
T Consensus 5 a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 466766666 7789999999999988877665323343333
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.7 Score=28.55 Aligned_cols=29 Identities=10% Similarity=-0.121 Sum_probs=19.4
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 50 PKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 50 ~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
...+||.|......|. +.|+.+--+..+.
T Consensus 7 ~~~~C~~C~ka~~~L~-------~~gi~~~~~di~~ 35 (73)
T cd03027 7 SRLGCEDCTAVRLFLR-------EKGLPYVEINIDI 35 (73)
T ss_pred ecCCChhHHHHHHHHH-------HCCCceEEEECCC
Confidence 3678999985554443 4677777777664
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.47 Score=29.25 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=20.1
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
|...+||.|......|. +.|+.+.-+..+..
T Consensus 6 ys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~ 36 (72)
T cd03029 6 FTKPGCPFCARAKAALQ-------ENGISYEEIPLGKD 36 (72)
T ss_pred EECCCCHHHHHHHHHHH-------HcCCCcEEEECCCC
Confidence 34789999986654443 45677666666543
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.36 Score=34.45 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=34.9
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHH-HhcCcEEEEEec
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDF-NERNAILLGGSS 83 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~-~~~~~~vi~Is~ 83 (181)
+.+.+-.++++|+.|+ ...||.|....+.+.++.+++ ....+.++....
T Consensus 5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 4455556677777776 667999999999999999998 233577776654
|
... |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.54 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=21.8
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEF 87 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~ 87 (181)
+|...+||.|......|. +.|+.+-.+..+...
T Consensus 3 ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~ 35 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQP 35 (72)
T ss_pred EEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCH
Confidence 455788999986655454 457777667666433
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.53 Score=29.52 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=20.9
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+|...|||.|......|.++.. ...++=|..+.
T Consensus 3 ~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 3 VVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 34458899999876655555433 34555555554
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=1 Score=28.75 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=21.5
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
.|...+||.|......| .++|+.+--|..+..
T Consensus 5 lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~ 36 (81)
T PRK10329 5 IYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRV 36 (81)
T ss_pred EEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCC
Confidence 44578999997544333 456888777777643
|
|
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.95 Score=28.79 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=20.3
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
+|...+||.|......|. ++++..--+..+..
T Consensus 6 ly~~~~Cp~C~~a~~~L~-------~~gi~y~~~dv~~~ 37 (83)
T PRK10638 6 IYTKATCPFCHRAKALLN-------SKGVSFQEIPIDGD 37 (83)
T ss_pred EEECCCChhHHHHHHHHH-------HcCCCcEEEECCCC
Confidence 444789999985554443 45666666666543
|
|
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.1 Score=27.63 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=20.1
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.|...+||.|......|+ +.|+.+--+..+.
T Consensus 4 ly~~~~Cp~C~~ak~~L~-------~~~i~~~~i~i~~ 34 (75)
T cd03418 4 IYTKPNCPYCVRAKALLD-------KKGVDYEEIDVDG 34 (75)
T ss_pred EEeCCCChHHHHHHHHHH-------HCCCcEEEEECCC
Confidence 444789999986554443 3567666666654
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum | Back alignment and domain information |
|---|
Probab=91.34 E-value=4.4 Score=29.65 Aligned_cols=121 Identities=14% Similarity=0.192 Sum_probs=69.6
Q ss_pred CccCCCcEEecccCCCCCCCCCcccceeeeecCCC---CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-------
Q psy2878 5 GQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF---PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER------- 74 (181)
Q Consensus 5 G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~---~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~------- 74 (181)
|..+|++.+.- =.+| +++.|.+. .|++-|++|= + -..+..+...|.++.+.+...
T Consensus 1 G~R~~~a~V~r--------~aD~----~p~~L~~~~~adGrfrI~vFa-g--d~~~~~~~~~l~~~~~~L~~~~~~~~~~ 65 (167)
T cd02979 1 GRRFPSAPVVR--------QADA----LPVHLGHRLPADGRFRIYVFA-G--DIAPAQQKSRLTQLCDALDSPDSFPLRY 65 (167)
T ss_pred CCcCCCceEEE--------ecCC----CCHhHhhhccCCCCEEEEEEc-C--CCCchhHHHHHHHHHHHHcCCcchHhhc
Confidence 56777777762 1466 77777553 5888888874 2 233355666777777666432
Q ss_pred ---------CcEEEEEecCCHHH-----HHHHHHHcCCCcccc-eeEEEcCC------chHHHHhCCCCCCCcceeeEEE
Q psy2878 75 ---------NAILLGGSSDNEFV-----KLAWRRENSNLYKLN-HWQFSDTN------GSLIDQLGIRHETGVALRATFI 133 (181)
Q Consensus 75 ---------~~~vi~Is~d~~~~-----~~~~~~~~~~~~~~~-~~~~~D~~------~~~~~~~gv~~~~g~~~p~~~l 133 (181)
-++++.|......+ +.+.........+.. +.++.|.. +...+.||+... ..+.+|
T Consensus 66 ~~~~~~~~~~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~----~g~vvv 141 (167)
T cd02979 66 TPRGADPDSVFDVVTIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDPE----RGAVVV 141 (167)
T ss_pred CCCCCCCCCcEEEEEEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCCC----CCCEEE
Confidence 15677776543221 112221110111223 33566643 568888887511 346889
Q ss_pred EcCCCcEEEEE
Q psy2878 134 FDPQNIIQHIT 144 (181)
Q Consensus 134 iD~~g~i~~~~ 144 (181)
+-|||.|-+..
T Consensus 142 vRPDgyVg~~~ 152 (167)
T cd02979 142 VRPDQYVALVG 152 (167)
T ss_pred ECCCCeEEEEe
Confidence 99999887665
|
PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria. |
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.79 Score=28.69 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=19.2
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.|...+||.|......|+ +.|+.+--+..+.
T Consensus 3 ly~~~~Cp~C~~a~~~L~-------~~~i~~~~~di~~ 33 (79)
T TIGR02181 3 IYTKPYCPYCTRAKALLS-------SKGVTFTEIRVDG 33 (79)
T ss_pred EEecCCChhHHHHHHHHH-------HcCCCcEEEEecC
Confidence 455889999986554444 3455555555543
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family | Back alignment and domain information |
|---|
Probab=90.76 E-value=2 Score=28.98 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCC
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g 138 (181)
...=|++..+++++.+..-+.|++++.+.+.+ .++. -...++......++++++|+. ++| ++|..+|
T Consensus 36 S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~-Lr~l----apgl~l~P~sgddLa~rL~l~-----hYP--vLit~tg 102 (105)
T TIGR03765 36 SRQWLQQNAAALKSLGAVGLVVNVETAAALQR-LRAL----APGLPLLPVSGDDLAERLGLR-----HYP--VLITATG 102 (105)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHH-HHHH----cCCCcccCCCHHHHHHHhCCC-----ccc--EEEecCc
Confidence 34446778888888888889999999888877 4443 456677777778999999986 544 6777776
|
This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE. |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=3.5 Score=35.40 Aligned_cols=108 Identities=10% Similarity=0.143 Sum_probs=68.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-C-CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-P-GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~-gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
+.+|..+|+..+. ..+| +++++-|+ . ++++||.|-...+ . . ....++.++
T Consensus 386 ~~~G~r~p~~~~~---------~~~~----~~~~l~d~~~~~~~~ll~~~~~~~--~------~-------~~~~~~~~~ 437 (502)
T PRK06184 386 LRAGDRAPDAPLL---------GAAG----QPTRLFDLFRGPHWTLLAFGAGAA--A------I-------LARRGLRIH 437 (502)
T ss_pred CCCcCCCCCchhc---------cCCC----ceeeHHHhhCCCcEEEEEecCCch--h------h-------hhhcCceEE
Confidence 4578888988776 4455 66666554 3 4788887632111 0 0 112356666
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
.|.... ....+.|.++.++..|++. ....+||-|||.|.++.. . ...+.+.+
T Consensus 438 ~~~~~~-----------------~~~~~~d~~g~~~~~~~~~------~~~~~lvRPDg~v~~~~~-~----~~~~~~~~ 489 (502)
T PRK06184 438 RVGDAA-----------------EGGDLVDDAGHFRDAYGLT------GGTLVLVRPDGYVGLIAA-G----DDAAALEA 489 (502)
T ss_pred EecccC-----------------CCCceeCCCccHHHHhcCC------CCcEEEECCCcceEEEec-C----CCHHHHHH
Confidence 554321 1123688899999999974 346899999999988752 1 36677777
Q ss_pred HHHhhc
Q psy2878 160 ILDAIQ 165 (181)
Q Consensus 160 ~l~~l~ 165 (181)
.++.+.
T Consensus 490 ~l~~~~ 495 (502)
T PRK06184 490 YLARVG 495 (502)
T ss_pred HHHHhc
Confidence 776654
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.4 Score=28.09 Aligned_cols=41 Identities=10% Similarity=-0.030 Sum_probs=24.0
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC--CHHHHHHHHHHc
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD--NEFVKLAWRREN 96 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d--~~~~~~~~~~~~ 96 (181)
|...+||+|......|. +.|+.+.-|..+ ..+..++++++.
T Consensus 6 yt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~ 48 (80)
T COG0695 6 YTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRG 48 (80)
T ss_pred EECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHh
Confidence 34667999976554443 556655555544 443555666653
|
|
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.65 Score=29.93 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=22.0
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
..|...|||.|......|.++..+.. ++.+.-+..+
T Consensus 3 ~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 3 VIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 34558899999877766665543322 4555555554
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >COG3054 Predicted transcriptional regulator [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.94 E-value=1.2 Score=32.24 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=76.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccce--eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHH-HHHHhcCcE-
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAF--KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLV-KDFNERNAI- 77 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~--~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~-~~~~~~~~~- 77 (181)
++.|.++|...+...+.- ..+| +.+ +++.-+++.||.-||.-..+. ...-....+.+..+- ..|....-+
T Consensus 23 lq~~q~vp~VgV~~~GEl----~l~~-~~~~y~~W~SAqL~GKvRV~~hiAGR-tsaKE~Na~lieaIk~a~fp~~~YQT 96 (184)
T COG3054 23 LQLGQRVPPVGVADRGEL----VLDK-DQFSYKTWNSAQLVGKVRVLQHIAGR-TSAKEKNATLIEAIKSAKFPHDRYQT 96 (184)
T ss_pred cccCCcCCCccccccceE----EecC-cceeecccchhhccchhhhhhhhhcc-cchhhhchHHHHHHHhccCChHHcee
Confidence 567888888776632211 1233 111 345557788997666666332 211111122222221 122222221
Q ss_pred EEEEecCCHH-HHHHHHHHc--CCCccccee-EEEcCCchHHH-HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCC
Q psy2878 78 LLGGSSDNEF-VKLAWRREN--SNLYKLNHW-QFSDTNGSLID-QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGR 152 (181)
Q Consensus 78 vi~Is~d~~~-~~~~~~~~~--~~~~~~~~~-~~~D~~~~~~~-~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~ 152 (181)
--.|+.|+.- -.-.|.+.- .....++|. ++.|.++ +++ ++++..+ ..+++++|++|+|.+... +.-...
T Consensus 97 TTIiN~DDAi~GtgmFVkssae~~Kke~pwSq~vlD~~g-vak~AWqL~e~----~SaivVlDk~G~Vkfvke-GaLt~a 170 (184)
T COG3054 97 TTIINTDDAIPGTGMFVKSSAESNKKEYPWSQFVLDSNG-VAKNAWQLKEE----SSAVVVLDKDGRVKFVKE-GALTQA 170 (184)
T ss_pred eEEeccCCccccccceeecchhhccccCCceeeEEccch-hhhhhhccccc----cceEEEEcCCCcEEEEec-CCccHH
Confidence 2234444411 001111110 011244554 5678777 555 7887521 237899999999999994 333456
Q ss_pred CHHHHHHHHHhh
Q psy2878 153 NPIETLRILDAI 164 (181)
Q Consensus 153 ~~~~ll~~l~~l 164 (181)
++++++..|.++
T Consensus 171 evQ~Vi~ll~~l 182 (184)
T COG3054 171 EVQQVIDLLQKL 182 (184)
T ss_pred HHHHHHHHHHHh
Confidence 778888877665
|
|
| >KOG1731|consensus | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.1 Score=45.06 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=38.0
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCc-EEEEEecCCHHHHHHHHHHc
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNA-ILLGGSSDNEFVKLAWRREN 96 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~-~vi~Is~d~~~~~~~~~~~~ 96 (181)
+.-+|-|| ++||+.|+...|.++++.+.+++ .++ .|.+|..-..+. .+-++++
T Consensus 58 ~~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef 112 (606)
T KOG1731|consen 58 KAKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREF 112 (606)
T ss_pred hhHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhc
Confidence 35677888 88999999999999999888887 444 555666544333 3446655
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=89.74 E-value=4.7 Score=35.03 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=71.7
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
.+|..+|+..+. +.+| ....+.++.| +++||.|- . -+.. .+. ......+...+..++.+
T Consensus 412 ~~G~~~p~~~~~---------~~~~----~~~~~d~~~~~~~~ll~~~--~-~~~~--~~~--~~~~~~~~~~~~~~~~~ 471 (538)
T PRK06183 412 PVGTLFPQPRVE---------LGGG----DRGLLDDVLGPGFAVLGWG--C-DPLA--GLS--DEQRARWRALGARFVQV 471 (538)
T ss_pred CcccCcCCCeeE---------cCCC----CcccchhccCCceEEEEec--C-Cchh--cCC--HHHHHHHHHcCCeEEEE
Confidence 468888988776 3344 4444566666 57777762 1 1211 111 11112355567777777
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
....... .-....+.|.++.+++.|+.. -...+||-||+.|.+... ....+.+++.+
T Consensus 472 ~~~~~~~------------~~~~~~~~d~~g~~~~~~~~~------~~~~~lvRPD~~v~~~~~-----~~~~~~~~~~l 528 (538)
T PRK06183 472 VPAVQAH------------TAQDDHDSDVDGALRAWLARH------GASAVLLRPDRYVAAAAD-----AQTLGALLAAL 528 (538)
T ss_pred ecccccc------------cCCCceeecCCchHHHHHHhC------CCEEEEECCCEEEEEeeC-----HHHHHHHHHHH
Confidence 6442110 112356789999999999964 346899999999986541 23567777776
Q ss_pred Hhh
Q psy2878 162 DAI 164 (181)
Q Consensus 162 ~~l 164 (181)
...
T Consensus 529 ~~~ 531 (538)
T PRK06183 529 AAL 531 (538)
T ss_pred Hhh
Confidence 543
|
|
| >PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5 | Back alignment and domain information |
|---|
Probab=89.23 E-value=3.1 Score=29.75 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCC
Q psy2878 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 60 ~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g 138 (181)
...=|++..+++++.+..=+.|++++.+.+++. ++. ....++......++++++++. ++| +||..+|
T Consensus 74 S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~L-r~l----apgl~l~P~sgddLA~rL~l~-----HYP--vLIt~~g 140 (142)
T PF11072_consen 74 SRQWLQQNAEELKQLGAVGLVVNVATEAALQRL-RQL----APGLPLLPVSGDDLARRLGLS-----HYP--VLITATG 140 (142)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHH-HHH----cCCCeecCCCHHHHHHHhCCC-----ccc--EEeecCC
Confidence 344467788888888888899999998888774 443 445667766678999999986 544 5676665
|
Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=5 Score=34.73 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=19.7
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHH
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKD 70 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~ 70 (181)
+++-+..|.+..||+|+.-...++++..+
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence 45544444588999999777777666543
|
|
| >PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.45 E-value=6.8 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=23.2
Q ss_pred ceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 127 ALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 127 ~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+.|+.-|+ +||++++..--..-.++..+.|.+.|..
T Consensus 95 SSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~ 130 (136)
T PF06491_consen 95 SSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQD 130 (136)
T ss_dssp -SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHH
Confidence 46777788 7999999884222335677777776654
|
; PDB: 3FHK_F. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=88.12 E-value=1 Score=29.92 Aligned_cols=35 Identities=9% Similarity=-0.012 Sum_probs=20.3
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
..++|+. .+|||.|...... +.+.++.+-.+..|.
T Consensus 8 ~~Vvvys--k~~Cp~C~~ak~~-------L~~~~i~~~~vdid~ 42 (99)
T TIGR02189 8 KAVVIFS--RSSCCMCHVVKRL-------LLTLGVNPAVHEIDK 42 (99)
T ss_pred CCEEEEE--CCCCHHHHHHHHH-------HHHcCCCCEEEEcCC
Confidence 3444443 7899999855433 334456555565553
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products | Back alignment and domain information |
|---|
Probab=86.40 E-value=4.4 Score=29.74 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=52.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC---CCCeEEEEEeeCCCCCCChhHHHHHHHHHH-------HH
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF---PGKWKIFYFYPKDFTFVCPTEISEYNKLVK-------DF 71 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~---~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~-------~~ 71 (181)
+.+|..+|+..+.- =.+| +++.|.+. .|++-|++|-...-.+.+...+..|.+..+ .|
T Consensus 30 l~~G~Rlp~~~v~r--------~aD~----~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~ 97 (169)
T PF07976_consen 30 LRPGRRLPSAKVVR--------HADG----NPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRF 97 (169)
T ss_dssp S-TTCB----EEEE--------TTTT----EEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHH
T ss_pred cCCccccCCceEEE--------EcCC----CChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhc
Confidence 67999999999872 3778 99999763 689888888644334444334444444332 22
Q ss_pred Hhc------CcEEEEEecCCHHHH--HH---HHHHcCCCcc-cceeEEEcC------CchHHHHhCCC
Q psy2878 72 NER------NAILLGGSSDNEFVK--LA---WRRENSNLYK-LNHWQFSDT------NGSLIDQLGIR 121 (181)
Q Consensus 72 ~~~------~~~vi~Is~d~~~~~--~~---~~~~~~~~~~-~~~~~~~D~------~~~~~~~~gv~ 121 (181)
... -++++.|...+..+. .. ....+....+ -.+.++.|. .+.+.+.|||.
T Consensus 98 ~~~~~~~~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 98 TPKDRDPDSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp SBTTS-TTSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred CCCCCCCCCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCC
Confidence 221 278888886542211 11 1111101112 235666763 36778888864
|
The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=86.21 E-value=7 Score=25.24 Aligned_cols=39 Identities=3% Similarity=-0.182 Sum_probs=21.1
Q ss_pred CCCeEEEEEeeC---CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 40 PGKWKIFYFYPK---DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 40 ~gk~~ll~F~~~---~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+.++++|+.-.+ .|||.|...... +.+.++.+-.+..+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~-------L~~~~i~y~~idv~~ 47 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQI-------LNQLGVDFGTFDILE 47 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHH-------HHHcCCCeEEEEcCC
Confidence 345666664322 478888644433 344456666666544
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx | Back alignment and domain information |
|---|
Probab=86.08 E-value=1.3 Score=29.60 Aligned_cols=43 Identities=5% Similarity=-0.193 Sum_probs=25.3
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--C--CHHHHHHHHHHc
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--D--NEFVKLAWRREN 96 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d--~~~~~~~~~~~~ 96 (181)
.+|...+|+.|+... +.++++|+.+--|.. + ..+.+.++....
T Consensus 2 ~iY~~~~C~~c~ka~-------~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 2 TIYGNPNCSTSRKAL-------AWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred EEEECCCCHHHHHHH-------HHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 355588899998554 334445655544443 2 355666666654
|
ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase. |
| >cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes | Back alignment and domain information |
|---|
Probab=85.81 E-value=2.1 Score=29.21 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=38.6
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--CC--HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--DN--EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+.+|....|+.|+... +.++++|+.+-.+.. ++ .+.+.+|.... +.++.-+...++...+..+.
T Consensus 2 i~iY~~~~C~~c~ka~-------~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~----~~~~~~l~n~~~~~~k~l~~ 69 (115)
T cd03032 2 IKLYTSPSCSSCRKAK-------QWLEEHQIPFEERNLFKQPLTKEELKEILSLT----ENGVEDIISTRSKAFKNLNI 69 (115)
T ss_pred EEEEeCCCCHHHHHHH-------HHHHHCCCceEEEecCCCcchHHHHHHHHHHh----cCCHHHHHhcCcHHHHHcCC
Confidence 3456578899998544 334455666666654 32 56777777765 44444444556666666654
|
It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif. |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=85.53 E-value=1.8 Score=31.32 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=28.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
.++..|+.|+ ...||.|....+.+.++.+++.. ++.+.
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLPK-DVKFE 51 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence 4677777776 66799999999999998888733 45444
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC | Back alignment and domain information |
|---|
Probab=84.71 E-value=1.6 Score=29.61 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=25.4
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--CC--HHHHHHHHHHc
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--DN--EFVKLAWRREN 96 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d~--~~~~~~~~~~~ 96 (181)
.|...+|+.|+.... .++++|+.+--+.. ++ .+.+.++....
T Consensus 3 iY~~~~C~~c~ka~~-------~L~~~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 3 FYEYPKCSTCRKAKK-------WLDEHGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred EEECCCCHHHHHHHH-------HHHHcCCceEEecccCCcccHHHHHHHHHHc
Confidence 455778999985553 34445665555543 33 55666777654
|
Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine. |
| >PRK01655 spxA transcriptional regulator Spx; Reviewed | Back alignment and domain information |
|---|
Probab=84.63 E-value=1.9 Score=30.22 Aligned_cols=65 Identities=8% Similarity=0.001 Sum_probs=38.1
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--CC--HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--DN--EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.+|...+|+.|+... +.+.++|+.+-.+.. ++ .+.+.+|.... +..+.-+....+...+..+..
T Consensus 2 i~iY~~~~C~~C~ka~-------~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~----~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 2 VTLFTSPSCTSCRKAK-------AWLEEHDIPFTERNIFSSPLTIDEIKQILRMT----EDGTDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEEEeCCCChHHHHHH-------HHHHHcCCCcEEeeccCChhhHHHHHHHHHHh----cCCHHHHHhcCcHHHHhCCCC
Confidence 3456688999998644 445556766655553 33 45666777654 334444444556666665543
|
|
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=84.54 E-value=3.2 Score=26.17 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=22.4
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
|....||.|....+.+.++.... ..++++.-..
T Consensus 4 f~d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 36 (98)
T cd02972 4 FFDPLCPYCYLFEPELEKLLYAD-DGGVRVVYRP 36 (98)
T ss_pred EECCCCHhHHhhhHHHHHHHhhc-CCcEEEEEec
Confidence 34778999999999988887333 3345555443
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins [] | Back alignment and domain information |
|---|
Probab=83.45 E-value=13 Score=27.02 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC---HHHHHHHHHHcCCCc
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN---EFVKLAWRRENSNLY 100 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~---~~~~~~~~~~~~~~~ 100 (181)
|.|| +++.||..|...- .....| .-+...+++..+.+.|-.++=+|.-+ ....+.|+.+..+..
T Consensus 5 DIDG-----TiT~SD~~G~i~~--~~G~d~------~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~ 71 (157)
T PF08235_consen 5 DIDG-----TITKSDVLGHILP--ILGKDW------THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQG 71 (157)
T ss_pred eccC-----CcCccchhhhhhh--ccCchh------hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCC
Confidence 7887 8999998776321 121223 34566788999999999999999755 566778887653322
Q ss_pred -cc-ceeEEEcC
Q psy2878 101 -KL-NHWQFSDT 110 (181)
Q Consensus 101 -~~-~~~~~~D~ 110 (181)
++ .-|++.-|
T Consensus 72 ~~lP~Gpv~~sP 83 (157)
T PF08235_consen 72 HNLPDGPVLLSP 83 (157)
T ss_pred ccCCCCCEEECC
Confidence 22 24455443
|
SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance []. |
| >TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family | Back alignment and domain information |
|---|
Probab=83.43 E-value=2.8 Score=28.64 Aligned_cols=61 Identities=10% Similarity=-0.098 Sum_probs=35.4
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC----HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN----EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+|....|+.|+....- ++++|+.+..+.... .+.+.++.... +..+.-+....+...+.++
T Consensus 3 iY~~~~C~~c~ka~~~-------L~~~~i~~~~idi~~~~~~~~el~~l~~~~----~~~~~~lin~~~~~~k~l~ 67 (117)
T TIGR01617 3 VYGSPNCTTCKKARRW-------LEANGIEYQFIDIGEDGPTREELLDILSLL----EDGIDPLLNTRGQSYRALN 67 (117)
T ss_pred EEeCCCCHHHHHHHHH-------HHHcCCceEEEecCCChhhHHHHHHHHHHc----CCCHHHheeCCCcchhhCC
Confidence 4557789999865533 444566666666432 44556666655 4444444445566666655
|
This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B. |
| >TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC | Back alignment and domain information |
|---|
Probab=82.87 E-value=14 Score=25.99 Aligned_cols=68 Identities=12% Similarity=-0.026 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCcEEE--EEecCCHHHHHHHHHHcCCCcc-cceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCC
Q psy2878 62 SEYNKLVKDFNERNAILL--GGSSDNEFVKLAWRRENSNLYK-LNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 62 ~~l~~l~~~~~~~~~~vi--~Is~d~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g 138 (181)
..|+++..+.++.|+.++ |+-.++.....+.+.+.....+ ..+.+ |..+.++|++. ..|+.+++..+.
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~~~~~~v~I----dP~lF~~f~I~-----~VPa~V~~~~~~ 82 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKDGGKSGVQI----DPQWFKQFDIT-----AVPAFVVVKDGL 82 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCCcEEE----ChHHHhhcCce-----EcCEEEEECCCC
Confidence 456777777777665443 5555665555555554422222 33333 68999999997 677877775543
|
This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.73 E-value=13 Score=32.43 Aligned_cols=115 Identities=8% Similarity=0.059 Sum_probs=67.4
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
.+|..+|+..+. .+| +..++.|+-| +++||.|-.. ... ....+.. .....++.++.+
T Consensus 428 ~pG~r~p~~~~~----------~~~----~~~~l~dl~g~~f~ll~~~~~-----~~~--~~~~~~~-~~~~~~~~~~~~ 485 (547)
T PRK08132 428 VPGAPAPDAPVR----------ADG----EPGWLLDLLGGGFTLLLFGDD-----AAA--AALLQAL-AAAALPVRVVAV 485 (547)
T ss_pred CCCCCCCCCccc----------CCC----CceEHHHhcCCCEEEEEecCC-----chh--hhhhhhh-hccCCceEEEEE
Confidence 467777776654 235 5667777755 5777766311 111 1111111 112234556666
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
..+... ..+-..+.|.++.+++.|++. ....+||-|||.|.++.. ....+.+.+.+
T Consensus 486 ~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~------~~~~~LvRPDg~va~~~~-----~~~~~~~~~~l 541 (547)
T PRK08132 486 VPAGAA-------------QAAAGVLEDADGLAAERYDAR------PGTVYLIRPDQHVAARWR-----TPDAAAVRAAL 541 (547)
T ss_pred ecCccc-------------ccCcccccCcccHHHHHhCCC------CCeEEEECCCceEEEEec-----CCCHHHHHHHH
Confidence 543211 112235679999999999974 346899999999998762 13667777776
Q ss_pred Hh
Q psy2878 162 DA 163 (181)
Q Consensus 162 ~~ 163 (181)
+.
T Consensus 542 ~~ 543 (547)
T PRK08132 542 AR 543 (547)
T ss_pred HH
Confidence 65
|
|
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=82.51 E-value=5.8 Score=27.25 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=14.3
Q ss_pred CeEEEEEeeC----CCCCCChhHHHHHHH
Q psy2878 42 KWKIFYFYPK----DFTFVCPTEISEYNK 66 (181)
Q Consensus 42 k~~ll~F~~~----~~cp~C~~~~~~l~~ 66 (181)
+.++|+.- + .+||+|..-..-|++
T Consensus 15 ~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 15 NPILLYMK-GSPKLPSCGFSAQAVQALSA 42 (115)
T ss_pred CCEEEEEC-CCCCCCCCchHHHHHHHHHH
Confidence 44555543 3 489999866544443
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=82.51 E-value=15 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=18.3
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHH
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKD 70 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~ 70 (181)
+++-+..|.+..||+|+.....++++..+
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~ 145 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALL 145 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 34434444488899998766666655544
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.69 E-value=5.4 Score=29.35 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 59 TEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 59 ~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
.-.|++.+..++.++.|+.++.+|.+.......|..+. +++|..-+
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l----~v~fi~~A 91 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL----GVPFIYRA 91 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc----CCceeecc
Confidence 34578889999999999999999999998888888876 66655443
|
|
| >KOG4277|consensus | Back alignment and domain information |
|---|
Probab=80.22 E-value=4.3 Score=32.81 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=22.3
Q ss_pred eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC
Q psy2878 43 WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75 (181)
Q Consensus 43 ~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~ 75 (181)
..++.|| +.||..|.+.-|--.+.--++++.|
T Consensus 45 iW~VdFY-APWC~HCKkLePiWdeVG~elkdig 76 (468)
T KOG4277|consen 45 IWFVDFY-APWCAHCKKLEPIWDEVGHELKDIG 76 (468)
T ss_pred eEEEEee-chhhhhcccccchhHHhCcchhhcC
Confidence 5677887 9999999876666555555555444
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=80.10 E-value=33 Score=30.66 Aligned_cols=124 Identities=17% Similarity=0.204 Sum_probs=67.6
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCC-C--CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-----
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESS-F--PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE----- 73 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~--~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~----- 73 (181)
+.+|..+|+..+... .+| +++.|.+ + .|++.|++|- + ..........|..+.+.+.+
T Consensus 463 ~~~G~r~~~~~v~~~--------~d~----~~~~l~~~~~~~g~~~l~~f~-~--~~~~~~~~~~l~~~~~~l~~~~~~~ 527 (634)
T PRK08294 463 FPIGKRFHSAPVIRL--------ADA----KPVHLGHAATADGRWRIYAFA-D--AADPAGPGSALDALCEFLAESPDSP 527 (634)
T ss_pred CCCceeCCCCceeec--------cCC----CchhHhhhcccCCCEEEEEEc-C--CCCcchhHHHHHHHHHHHhhCccch
Confidence 567889998888721 455 6666553 2 5788888874 2 22223445556555555521
Q ss_pred ------cC------cEEEEEecCCHH-----HHHHHHHHcCCCccc-ce-eEEEc--CCchHHHHhCCCCCCCcceeeEE
Q psy2878 74 ------RN------AILLGGSSDNEF-----VKLAWRRENSNLYKL-NH-WQFSD--TNGSLIDQLGIRHETGVALRATF 132 (181)
Q Consensus 74 ------~~------~~vi~Is~d~~~-----~~~~~~~~~~~~~~~-~~-~~~~D--~~~~~~~~~gv~~~~g~~~p~~~ 132 (181)
.+ +.++.|...+.. .+.+....+....++ .+ .++.| ........||+... ..+.+
T Consensus 528 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~----~g~~v 603 (634)
T PRK08294 528 LRRFTPSGADIDAVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRD----RGAVV 603 (634)
T ss_pred HhhcCCCCCCCCcEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCC----ceeEE
Confidence 11 566666654311 111212211111122 22 24444 22467788887522 24788
Q ss_pred EEcCCCcEEEEE
Q psy2878 133 IFDPQNIIQHIT 144 (181)
Q Consensus 133 liD~~g~i~~~~ 144 (181)
|+-|||.|-+..
T Consensus 604 vvRPD~~v~~~~ 615 (634)
T PRK08294 604 VVRPDQYVANVL 615 (634)
T ss_pred EECCCCceEEEe
Confidence 999999888766
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 181 | ||||
| 2bmx_A | 195 | Mycobacterium Tuberculosis Ahpc Length = 195 | 3e-34 | ||
| 1uul_A | 202 | Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr | 3e-27 | ||
| 2h01_A | 192 | Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I | 4e-26 | ||
| 3tue_A | 219 | The Structure Of Tryparedoxin Peroxidase I From Lei | 1e-25 | ||
| 3sbc_A | 216 | Crystal Structure Of Saccharomyces Cerevisiae Tsa1c | 2e-25 | ||
| 2h66_A | 213 | The Crystal Structure Of Plasmodium Vivax 2-Cys Per | 1e-24 | ||
| 3zvj_A | 219 | Crystal Structure Of High Molecular Weight (Hmw) Fo | 2e-24 | ||
| 1zye_A | 220 | Crystal Strucutre Analysis Of Bovine Mitochondrial | 3e-24 | ||
| 3ztl_A | 222 | Crystal Structure Of Decameric Form Of Peroxiredoxi | 3e-24 | ||
| 3zvj_D | 219 | Crystal Structure Of High Molecular Weight (Hmw) Fo | 3e-24 | ||
| 2rii_A | 199 | Crystal Structure Of Human Peroxiredoxin I In Compl | 1e-23 | ||
| 1qq2_A | 199 | Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi | 1e-23 | ||
| 1yf1_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 1e-22 | ||
| 1yf0_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 1e-22 | ||
| 2z9s_A | 199 | Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI | 2e-22 | ||
| 1yep_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 3e-22 | ||
| 3emp_A | 186 | Crystal Structure Of The S-Acetanilide Modified For | 4e-22 | ||
| 1qmv_A | 197 | Thioredoxin Peroxidase B From Red Blood Cells Lengt | 5e-22 | ||
| 2c0d_A | 221 | Structure Of The Mitochondrial 2-Cys Peroxiredoxin | 5e-22 | ||
| 1yex_A | 186 | Structural And Biochemical Analysis Of The Link Bet | 6e-22 | ||
| 1e2y_A | 188 | Tryparedoxin Peroxidase From Crithidia Fasciculata | 9e-22 | ||
| 3hy2_A | 206 | Crystal Structure Of Sulfiredoxin In Complex With P | 1e-21 | ||
| 1zof_A | 198 | Crystal Structure Of Alkyl Hydroperoxide-Reductase | 4e-21 | ||
| 1n8j_A | 186 | Crystal Structure Of Ahpc With Active Site Cysteine | 4e-21 | ||
| 3qpm_A | 240 | Crystal Structure Of Peroxiredoxin Prx4 From Pseudo | 9e-21 | ||
| 3tjf_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C51a Mu | 2e-20 | ||
| 3tjb_A | 254 | Crystal Structure Of Wild-Type Human Peroxiredoxin | 2e-20 | ||
| 2pn8_A | 211 | Crystal Structure Of Human Peroxiredoxin 4 (Thiored | 2e-20 | ||
| 3tkp_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 2e-20 | ||
| 1we0_A | 187 | Crystal Structure Of Peroxiredoxin (Ahpc) From Amph | 3e-20 | ||
| 3tkr_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 5e-20 | ||
| 3tjk_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C245a M | 5e-20 | ||
| 3tks_A | 246 | Crystal Structure Of Full-Length Human Peroxiredoxi | 5e-19 | ||
| 3tjj_A | 254 | Crystal Structure Of Human Peroxiredoxin Iv C245a M | 1e-18 | ||
| 1xcc_A | 220 | 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2 | 5e-12 | ||
| 2e2g_A | 250 | Crystal Structure Of Archaeal Peroxiredoxin, Thiore | 6e-12 | ||
| 3a5w_A | 249 | Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 | 6e-12 | ||
| 3a2v_A | 249 | Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp | 7e-12 | ||
| 1x0r_A | 249 | Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len | 4e-11 | ||
| 3a2w_A | 249 | Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero | 1e-10 | ||
| 3tb2_A | 220 | 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2 | 1e-10 | ||
| 2e2m_A | 250 | Crystal Structure Of Archaeal Peroxiredoxin, Thiore | 1e-10 | ||
| 2zct_A | 249 | Oxidation Of Archaeal Peroxiredoxin Involves A Hype | 2e-10 | ||
| 2cv4_A | 250 | Crystal Structure Of An Archaeal Peroxiredoxin From | 9e-10 | ||
| 2ywn_A | 157 | Crystal Structure Of Peroxiredoxin-Like Protein Fro | 2e-09 | ||
| 3hjp_A | 164 | The Crystal Structure Of Bcp4 From Sulfolobus Solfa | 4e-09 | ||
| 2v2g_A | 233 | Crystal Structure Of The C45s Mutant Of The Peroxir | 1e-08 | ||
| 1prx_A | 224 | Horf6 A Novel Human Peroxidase Enzyme Length = 224 | 3e-08 | ||
| 3gkk_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 4e-06 | ||
| 4gqc_A | 164 | Crystal Structure Of Aeropyrum Pernix Peroxiredoxin | 2e-05 | ||
| 2cx3_A | 164 | Crystal Structure Of A Bacterioferritin Comigratory | 2e-05 | ||
| 3drn_A | 161 | The Crystal Structure Of Bcp1 From Sulfolobus Sulfa | 4e-05 | ||
| 3ixr_A | 179 | Crystal Structure Of Xylella Fastidiosa Prxq C47s M | 5e-05 | ||
| 3gkn_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 6e-05 | ||
| 3gkm_A | 163 | Insights Into The Alkyl Peroxide Reduction Activity | 7e-05 |
| >pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195 | Back alignment and structure |
|
| >pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202 | Back alignment and structure |
|
| >pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192 | Back alignment and structure |
|
| >pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219 | Back alignment and structure |
|
| >pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216 | Back alignment and structure |
|
| >pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213 | Back alignment and structure |
|
| >pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219 | Back alignment and structure |
|
| >pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220 | Back alignment and structure |
|
| >pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222 | Back alignment and structure |
|
| >pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219 | Back alignment and structure |
|
| >pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199 | Back alignment and structure |
|
| >pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199 | Back alignment and structure |
|
| >pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199 | Back alignment and structure |
|
| >pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186 | Back alignment and structure |
|
| >pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197 | Back alignment and structure |
|
| >pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221 | Back alignment and structure |
|
| >pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186 | Back alignment and structure |
|
| >pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188 | Back alignment and structure |
|
| >pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206 | Back alignment and structure |
|
| >pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198 | Back alignment and structure |
|
| >pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186 | Back alignment and structure |
|
| >pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240 | Back alignment and structure |
|
| >pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254 | Back alignment and structure |
|
| >pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254 | Back alignment and structure |
|
| >pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211 | Back alignment and structure |
|
| >pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246 | Back alignment and structure |
|
| >pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187 | Back alignment and structure |
|
| >pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246 | Back alignment and structure |
|
| >pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254 | Back alignment and structure |
|
| >pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246 | Back alignment and structure |
|
| >pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254 | Back alignment and structure |
|
| >pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220 | Back alignment and structure |
|
| >pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250 | Back alignment and structure |
|
| >pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249 | Back alignment and structure |
|
| >pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249 | Back alignment and structure |
|
| >pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249 | Back alignment and structure |
|
| >pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249 | Back alignment and structure |
|
| >pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220 | Back alignment and structure |
|
| >pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250 | Back alignment and structure |
|
| >pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249 | Back alignment and structure |
|
| >pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250 | Back alignment and structure |
|
| >pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From Sulfolobus Tokodaii Length = 157 | Back alignment and structure |
|
| >pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus Length = 164 | Back alignment and structure |
|
| >pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233 | Back alignment and structure |
|
| >pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme Length = 224 | Back alignment and structure |
|
| >pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163 | Back alignment and structure |
|
| >pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q Enzyme In Fully- Folded And Locally-unfolded Conformations Length = 164 | Back alignment and structure |
|
| >pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory Protein Peroxiredoxin From The Aeropyrum Pernix K1 (Form-1 Crystal) Length = 164 | Back alignment and structure |
|
| >pdb|3DRN|A Chain A, The Crystal Structure Of Bcp1 From Sulfolobus Sulfataricus Length = 161 | Back alignment and structure |
|
| >pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant Length = 179 | Back alignment and structure |
|
| >pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped Intermediate/ligand Complex Structures Length = 163 | Back alignment and structure |
|
| >pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of Xanthomonas Campestris Bacterioferritin Comigratory Protein From The Trapped IntermediateLIGAND COMPLEX STRUCTURES Length = 163 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 181 | |||
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 2e-82 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 5e-58 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 2e-57 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 3e-57 | |
| 1e2y_A | 188 | TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin | 7e-57 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 2e-56 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 1e-55 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 4e-55 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 5e-55 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 6e-55 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 3e-54 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 3e-53 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 1e-52 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 1e-52 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 2e-52 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 5e-52 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 6e-41 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 4e-40 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 3e-39 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 7e-39 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 2e-38 | |
| 2ywn_A | 157 | Peroxiredoxin-like protein; redox protein, structu | 2e-24 | |
| 2cx4_A | 164 | Bacterioferritin comigratory protein; oxidoreducta | 9e-23 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 1e-20 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 1e-16 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 1e-16 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 2e-16 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 3e-15 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 2e-14 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 6e-14 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 7e-14 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 9e-14 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 6e-12 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 8e-12 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 9e-11 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 3e-05 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 8e-05 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 1e-04 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 1e-04 |
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 2e-82
Identities = 73/183 (39%), Positives = 104/183 (56%), Gaps = 2/183 (1%)
Query: 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVS--AFKVITESSFPGKWKIFYFYPKDFTFVCP 58
+ TIG +Y++ + G + F IT PGKW++ +F+PKDFTFVCP
Sbjct: 3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCP 62
Query: 59 TEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118
TEI+ ++KL +F +R+A +LG S D+EF WR ++++L L SD L
Sbjct: 63 TEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA 122
Query: 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCACNRTLNG 178
G+ + GVA R TFI DP N IQ ++ +VGRN E LR+LDA+Q+ +LCA N
Sbjct: 123 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDELCASNWRKGD 182
Query: 179 KTL 181
TL
Sbjct: 183 PTL 185
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 5e-58
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F + F +TE+ GKW I FYP DF+FVCPTE+ + K + +
Sbjct: 8 QPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVE 67
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDP 136
+ S+D FV AW + + + + D + ++ Q + +E TG+A R TFI DP
Sbjct: 68 VYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDP 127
Query: 137 QNIIQHITVNNLNVGRNPIETLRILDAIQ-----TGKLCACNRTLNGKTL 181
+IQ I +N +GR+ + + A Q G++C G+TL
Sbjct: 128 DGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWEEGGETL 177
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 2e-57
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F +TE G+W +F+FYP DFTFV PTE+ + ++ + + S+D F
Sbjct: 20 FIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK 79
Query: 91 AWRRENSNLYKLNHWQFSDTNGSLIDQLGI-RHETGVALRATFIFDPQNIIQHITVNNLN 149
AW + + K+ + D G+L R + G+A RATF+ DPQ IIQ I V
Sbjct: 80 AWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEG 139
Query: 150 VGRNPIETLRILDAIQ-----TGKLCACNRTLNGKTL 181
+GR+ + LR + A Q G++C TL
Sbjct: 140 IGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATL 176
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 3e-57
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%)
Query: 26 NNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84
N + S GK I +F+PKDFTFVCPTEI ++K VKDF+E+ ++G S D
Sbjct: 17 GNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID 76
Query: 85 NEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQ 141
+E V AW+ E + +++ +D S+ + E +ALR F+ D ++
Sbjct: 77 SEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVR 136
Query: 142 HITVNNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
H +N+L +GRN E LR++DA+ G++C K +
Sbjct: 137 HAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGM 180
|
| >1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 7e-57
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F+ FK ++ SS+ GK+ + +FYP DFTFVCPTEI +++ K F E N
Sbjct: 13 PEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTE 72
Query: 78 LLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFI 133
++ S D+E+ L W R+ L + +D ++ G+ E +GVA R FI
Sbjct: 73 VISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFI 132
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
DP ++ I +N++ +GRN E +R+++A+Q G++C N
Sbjct: 133 IDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPANWKKGDAKK 184
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 2e-56
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
P F ++F + + F GK + + YFYP DFTFVCP+EI +K + F+ERN
Sbjct: 28 PFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNV 87
Query: 77 ILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFI 133
LLG S D+++ LAW+ + + H SD S+ + + V+LRA +
Sbjct: 88 ELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVL 147
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
D I+QH+ VNNL +GR+ E LRI+DAIQ G +C N ++
Sbjct: 148 IDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHEKYGDVCPANWQKGKVSM 199
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 1e-55
Identities = 62/172 (36%), Positives = 91/172 (52%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
P F + F ++ S F GK + + YFYP DFTFVCP+EI +K + F ERN
Sbjct: 7 PSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNV 66
Query: 77 ILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFI 133
LLG S D++F LAW+ + + H SD + S+ + VALRA +
Sbjct: 67 ELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVL 126
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
D Q ++QH+ VNNL +GR+ E LR++DA+Q G +C N +++
Sbjct: 127 IDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKGKESM 178
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 4e-55
Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
F N + + SSF G K+ FYP ++TFVCPTEI E+NK +KDF +N
Sbjct: 32 YNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNV 91
Query: 77 ILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFI 133
LLG S D+ + LAW+ E + + SD N + + ++ ALR FI
Sbjct: 92 ELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFI 151
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
D ++H TVN+L +GRN E LR +D+I +G++C N K
Sbjct: 152 IDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVDTSGEVCPINWKKGQKAF 203
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 5e-55
Identities = 63/159 (39%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
F ++ + GK+ + F P FTFV PTEI +++ K F E+ A +L S+D+E+ L
Sbjct: 42 FDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLL 101
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R+ L +N +DTN SL G+ E GVALR FI DP+ +I+HIT+N
Sbjct: 102 AWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITIN 161
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+L VGRN E LR+++A Q G + CN T T+
Sbjct: 162 DLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATI 200
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 6e-55
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK I + GK+ + +FYP DFTFVCPTEI ++ V++FN RN ++ S+D+++ L
Sbjct: 59 FKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHL 118
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R++ L + +D + G+ E G A R FI DP I++ IT+N
Sbjct: 119 AWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITIN 178
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+ VGR+ ETLR+LDA Q G++C N +
Sbjct: 179 DKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWKRGQHGI 217
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 3e-54
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNK 66
S + P FN FK + +S+ GKW + +FYP DFTFVCPTEI +++
Sbjct: 2 SCGEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSD 61
Query: 67 LVKDFNERNAILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE 123
VK+F++ +L S D+E+ LAW R+ L ++N +D ++ G+ E
Sbjct: 62 RVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKE 121
Query: 124 -TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ----TGKLCACNRTLNG 178
GVA R FI DP+ ++ ITVN+L VGR+ E LR++ A Q G++C N
Sbjct: 122 EDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGD 181
Query: 179 KTL 181
KT+
Sbjct: 182 KTM 184
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 1e-52
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK I+ F GK+ + +FYP DFTFVCPTEI ++ +F++ N ++ S D+ F L
Sbjct: 46 FKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHL 105
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R+N L +N SD + G+ E G+ALR FI DP +I+H++VN
Sbjct: 106 AWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVN 165
Query: 147 NLNVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++ N T T+
Sbjct: 166 DLPVGRSVEETLRLVKAFQFVEAHGEVSPANWTPESPTI 204
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 1e-52
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + S + GK+ +F+FYP DFTFVCPTEI ++ V +F N ++ S D++F L
Sbjct: 67 FKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHL 126
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R+ L + SD + G+ E G LR FI D + +++ IT+N
Sbjct: 127 AWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMN 186
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++C T+
Sbjct: 187 DLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSDTI 225
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-52
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + + + GK+ +F+FYP DFTFVCPTEI + +++F N ++ S D++F L
Sbjct: 81 FKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL 140
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R L + SD + G+ E +G LR FI D + I++ IT+N
Sbjct: 141 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLN 200
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++ +T+
Sbjct: 201 DLPVGRSVDETLRLVQAFQYTDKHGEVAPAGWKPGSETI 239
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 5e-52
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 31 FKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKL 90
FK + + + GK+ +F+FYP DFTFVCPTEI + +++F N ++ S D++F L
Sbjct: 38 FKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL 97
Query: 91 AWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDPQNIIQHITVN 146
AW R L + SD + G+ E +G LR FI D + I++ IT+N
Sbjct: 98 AWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLN 157
Query: 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
+L VGR+ ETLR++ A Q G++C +T+
Sbjct: 158 DLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETI 196
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 6e-41
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 12/152 (7%)
Query: 18 PGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
P F L ++N +++T + G K + F+P FT +C E+ + + +F ++
Sbjct: 16 PDFTLRDQN----QQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDS 71
Query: 77 ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD--TNGSLIDQLGI-RHETGVALRATFI 133
L S W + SD +G++ G+ + G+A R TF+
Sbjct: 72 AALAISVGPPPTHKIWATQ----SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFV 127
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165
D II+ + R+ L A+
Sbjct: 128 VDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-40
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLY 100
W I + +P DFT VC TE++E K+ +DF + N L+G S +++ W +
Sbjct: 31 NSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYG 90
Query: 101 KLNHWQF---SDTNGSLIDQLGIRHE-------TGVALRATFIFDPQNIIQHITVNNLNV 150
KLN W+ D + L ++L I E + R F P+ I+ +
Sbjct: 91 KLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATT 150
Query: 151 GRNPIETLRILDAIQT 166
GRN E LR+L ++Q
Sbjct: 151 GRNAHEILRVLKSLQL 166
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-39
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWR---RENS 97
W I + +P+DFT VC TE+ KL +F +RN L+ S D+ LAW +
Sbjct: 31 DSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYN 90
Query: 98 NLYKLNHWQF---SDTNGSLIDQLGIRHE-------TGVALRATFIFDPQNIIQHITVNN 147
+ F D N L LG+ V R F+F P ++ +
Sbjct: 91 SEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYP 150
Query: 148 LNVGRNPIETLRILDAIQT 166
GRN E LR++ ++Q
Sbjct: 151 ATTGRNFDEILRVVISLQL 169
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 7e-39
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWR---RENS 97
GKW + + +P DFT VC TE + + +DF L+G S D+ F + W+ +
Sbjct: 33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHI 92
Query: 98 NLYKLNHWQF---SDTNGSLIDQLGIRH--ETGVALRATFIFDPQNIIQHITVNNLNVGR 152
+ F +D G++ +LG+ H +R FI D + +I+ + + +GR
Sbjct: 93 GV----RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGR 148
Query: 153 NPIETLRILDAIQTG 167
E LRI+ A++ G
Sbjct: 149 LVDEILRIVKALKLG 163
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-38
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 15/139 (10%)
Query: 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWR---RENS 97
W + + +P+DFT V TE+ +L DF +R L+ S DN W + S
Sbjct: 29 NSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLS 88
Query: 98 NLYKLNHWQF---SDTNGSLIDQLGIRHE-------TGVALRATFIFDPQNIIQHITVNN 147
+ + +D L +LG+ + RA FI P ++ +
Sbjct: 89 GVK--GDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYP 146
Query: 148 LNVGRNPIETLRILDAIQT 166
GRN E LR++D++Q
Sbjct: 147 ATTGRNFSEILRVIDSLQL 165
|
| >2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 2e-24
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F LP+ K + S+ GK + FYP FT VC E+ + + FN+ NA+
Sbjct: 11 PDFELPDTEL----KKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAV 66
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE------TGVALRAT 131
+LG S D F A++ KLN SD N ++ + + E +A RA
Sbjct: 67 VLGISVDPPFSNKAFKEH----NKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAV 122
Query: 132 FIFDPQNIIQHITVNNLNVGRNPI-ETLRILDAI 164
F+ D + +++ V++ P E +++ ++
Sbjct: 123 FVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156
|
| >2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 9e-23
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 16/156 (10%)
Query: 18 PGFNLPEENNVSAFKVITESSFP--GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75
P F LP ++ + + G+ + F+P F+ VC E+ + + + N
Sbjct: 12 PDFTLPNQDF----EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN 67
Query: 76 AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET-----GVALRA 130
A +L S D+ + ++ E +L SD N +I + HE VA RA
Sbjct: 68 AEVLAISVDSPWCLKKFKDE----NRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRA 123
Query: 131 TFIFDPQNIIQHITVNNLNVGRNPI-ETLRILDAIQ 165
FI P + + V + + E +R + I
Sbjct: 124 VFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-20
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 23/163 (14%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWK-IFYFYPKDFTFVCPTEISEYNKLVKDF 71
+G K P F +N + I+ S + GK + YFYPKD T E S +
Sbjct: 4 VGDKAPLFEGIADNG----EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLL 59
Query: 72 NERNAILLGGSSDNE-----FV-KLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETG 125
+ + +++G SSD+ F K YKL SD + + + G +
Sbjct: 60 KDYDVVVIGVSSDDINSHKRFKEK----------YKLPFILVSDPDKKIRELYGAKGFIL 109
Query: 126 VALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGK 168
R TF+ D + II+HI + +N + E L+ L I+ +
Sbjct: 110 P-ARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEEE 151
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-16
Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 28/144 (19%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
+ L T + G W + YFYPKD T TE ++N L+ +F+
Sbjct: 11 LPAATFDLPLSLSGG----TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFD 66
Query: 73 ERNAILLGGSSDNE-----FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE---- 123
+ A +LG S D+ F SD + +L + E
Sbjct: 67 KAGAKILGVSRDSVKSHDNFCA---------KQGFAFPLVSDGDEALCRAFDVIKEKNMY 117
Query: 124 ----TGVALRATFIFDPQNIIQHI 143
G+ R+TF+ P+ +
Sbjct: 118 GKQVLGI-ERSTFLLSPEGQVVQA 140
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-16
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 13/129 (10%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P + ++ + ++ P T VC TE ++N+++
Sbjct: 28 PEAVVVTKD----LQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVD 81
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE----TGVALRATFI 133
+ S D F + + + N SD +++ G+ G+ RA FI
Sbjct: 82 VTVVSMDLPFAQKRFCESFN---IQNVTVASDFRYRDMEKYGVLIGEGALKGILARAVFI 138
Query: 134 FDPQNIIQH 142
D + + +
Sbjct: 139 IDKEGKVAY 147
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-16
Identities = 34/144 (23%), Positives = 51/144 (35%), Gaps = 28/144 (19%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
+ L + T S + +W + YFYPKD T TE E+N L+ F
Sbjct: 27 LNHSLLNHPLMLSGS----TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFE 82
Query: 73 ERNAILLGGSSDNE-----FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE---- 123
+ NA +LG S D+ F SD++ L + E
Sbjct: 83 QINATVLGVSRDSVKSHDSFCA---------KQGFTFPLVSDSDAILCKAFDVIKEKTMY 133
Query: 124 ----TGVALRATFIFDPQNIIQHI 143
G+ R+TF+ P + I
Sbjct: 134 GRQVIGI-ERSTFLIGPTHRIVEA 156
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 3e-15
Identities = 34/161 (21%), Positives = 51/161 (31%), Gaps = 25/161 (15%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--- 74
P F L + VI+ F GK + +P T VC T V+ F+ER
Sbjct: 25 PAFTLTGGD----LGVISSDQFRGKSVLLNIFPSVDTPVCATS-------VRTFDERAAA 73
Query: 75 -NAILLGGSSDNEFVKLAWR-RENSNLYKLNHWQFSDTNGSLIDQLGIRHE----TGVAL 128
A +L S D F + + E + S S + G+ G+
Sbjct: 74 SGATVLCVSKDLPFAQKRFCGAEGTENVMP----ASAFRDSFGEDYGVTIADGPMAGLLA 129
Query: 129 RATFIFDPQNIIQHI-TVNNLNVGRNPIETLRILDAIQTGK 168
RA + + + V + N L L A
Sbjct: 130 RAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSGSH 170
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-14
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 18/153 (11%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F+L + + + F GK K+ P T +C T+ +N+ + + N +
Sbjct: 23 LDFSLTTTD----LSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTV 76
Query: 78 LLGGSSDNEFVKLAWRREN--SNLYKLN-HW--QFSDTNGSLIDQLGIRHETGVALRATF 132
+L S D F + W N L+ ++ F LI+ E + RA F
Sbjct: 77 VLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLIN------EWHLLARAVF 130
Query: 133 IFDPQNIIQHI-TVNNLNVGRNPIETLRILDAI 164
+ D N I+++ V+N+N N + A+
Sbjct: 131 VLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 6e-14
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F L ++ + SSF GK K+ +P T VC + ++N+L + N +
Sbjct: 59 KDFTLVAKDL----SDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTV 112
Query: 78 LLGGSSDNEFVKLAWRREN--SNLYKLNHW---QFSDTNGSLIDQLGIRHETGVALRATF 132
+L SSD F + + SN+ L+ F G I + + G+ RA
Sbjct: 113 VLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITEGPLA---GLTARAVV 169
Query: 133 IFDPQNIIQH 142
+ D Q+ + +
Sbjct: 170 VLDGQDNVIY 179
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Length = 165 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 7e-14
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 16/131 (12%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F L + + + F K K+ +P T VC T + ++N+ + N I
Sbjct: 24 ENFILVGND----LADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTI 77
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKL------NHWQFSDTNGSLIDQLGIRHETGVALRAT 131
+L S+D F + + + + G I + G+ RA
Sbjct: 78 VLCISADLPFAQARFCGAE-GIENAKTVSTFRNHALHSQLGVDIQTGPLA---GLTSRAV 133
Query: 132 FIFDPQNIIQH 142
+ D QN + H
Sbjct: 134 IVLDEQNNVLH 144
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 9e-14
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F + + + +T + + GK K+ P T VC + ++N D ++ I
Sbjct: 27 PDFTVLDNDL----NQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFN---SDASKEEGI 79
Query: 78 LLGGSSDNEFVKLAWRREN--SNLYKLNHW---QFSDTNGSLIDQLGIRHETGVALRATF 132
+L S+D F + W N+ L+ F + G +++ E + RA F
Sbjct: 80 VLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVME------ELRLLARAVF 133
Query: 133 IFDPQNIIQH 142
+ D N + +
Sbjct: 134 VLDADNKVVY 143
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Length = 224 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 6e-12
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 12/130 (9%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F L ++ SF K+ + + +
Sbjct: 29 PSFMLVDDQ----KHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLK 84
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD-TNGSLIDQLGIRHET----GVALRATF 132
L+ + D+ R E+ L N S + G+ G A
Sbjct: 85 LIVITVDSPSSLARARHEH-GLP--NIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAII 141
Query: 133 IFDPQNIIQH 142
+ D N++ +
Sbjct: 142 LADAANVVHY 151
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 8e-12
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F + + + + + GK I P T VC + +N+ +
Sbjct: 25 PDFTVLTNS----LEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVN 78
Query: 78 LLGGSSDNEFVKLAWRREN--SNLYKL---NHWQFSDTNGSLIDQLGIRHETGVALRATF 132
+ S+D F + W N + L F + G I E + R+ F
Sbjct: 79 VYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIK------ELRLLARSVF 132
Query: 133 IFDPQNIIQHITVN 146
+ D + +
Sbjct: 133 VLDENGKVVYAEYV 146
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 9e-11
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFP--GKWKIFYFYPKDFTFVCPTEISEYNKLVKD 70
IG P +L E+N I+ + +F+ YP+ T + S + ++
Sbjct: 9 IGDPIPDLSLLNEDN----DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQE 64
Query: 71 FNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET--GVAL 128
E A+ G S+D+ + L + SD I LG + G +
Sbjct: 65 LKEYAAV-FGLSADSV-TSQKKFQSK---QNLPYHLLSDPKREFIGLLGAKKTPLSGS-I 118
Query: 129 RATFIFDPQNII 140
R+ FIF +
Sbjct: 119 RSHFIFVDGKLK 130
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Length = 200 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVKDFNERNA 76
F+L + TE + GK+ I YF F+ +CP E+ + + + +
Sbjct: 24 FHLEDMYG----NEFTEKNLLGKFSIIYF---GFSNCPDICPDELDKLGLWLNTLSSKYG 76
Query: 77 ILL 79
I L
Sbjct: 77 ITL 79
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVKDFNER 74
F ++ K ++ S G+ + F FT +CP + L K
Sbjct: 14 EPFTFQNQDG----KNVSLESLKGEVWLADFI---FTNCETICPPMTAHMTDLQKKLKAE 66
Query: 75 N 75
N
Sbjct: 67 N 67
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Length = 171 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVK 69
F+L + + ++ F G+W + YF FT +CP E+ + ++V+
Sbjct: 9 FHLLDHRG----RARCKADFRGQWVLMYF---GFTHCPDICPDELEKLVQVVR 54
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Length = 164 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF---VCPTEISEYNKLVKDFNERN 75
F+L + T+ + G+W + YF FT VCP E+ + ++V + +
Sbjct: 6 FSLTTHTG----ERKTDKDYLGQWLLIYF---GFTHCPDVCPEELEKMIQVVDEIDSIT 57
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 100.0 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 100.0 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 100.0 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 100.0 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 100.0 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 100.0 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 100.0 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 100.0 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 100.0 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 100.0 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 100.0 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 100.0 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 100.0 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 100.0 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 100.0 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 100.0 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 100.0 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 100.0 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 100.0 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 100.0 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 100.0 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 100.0 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 100.0 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 100.0 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 100.0 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 100.0 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 100.0 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 100.0 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 100.0 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 100.0 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 100.0 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.98 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.98 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.97 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.97 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.97 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.97 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.97 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.97 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.97 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.97 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.97 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.97 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.97 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.97 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.96 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.96 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.96 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.96 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.96 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.96 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.96 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.95 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.95 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.95 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.95 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.95 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.95 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.95 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.95 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.95 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.95 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.95 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.95 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.95 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.94 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.94 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.94 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.94 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.94 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.94 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.94 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.94 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.94 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.94 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.94 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.94 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.94 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.94 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.94 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.93 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.93 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.93 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.93 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.93 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.93 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.93 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.93 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.93 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.93 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.92 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.92 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.87 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.92 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.92 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.92 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.91 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.9 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.9 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.89 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.88 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.87 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.87 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.77 | |
| 4h86_A | 199 | Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch | 99.71 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.64 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.61 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.57 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.51 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.45 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.44 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.43 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.42 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.38 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.37 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.33 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.3 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.3 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.28 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.28 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.28 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.28 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.28 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.27 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.26 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.26 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.26 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.26 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.26 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.25 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.25 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.24 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.24 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.24 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.24 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.23 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.22 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.22 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.22 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.22 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.21 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.21 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.21 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.21 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.2 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.2 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.19 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.19 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.19 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.18 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.18 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.18 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.18 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.18 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.18 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.18 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.17 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.79 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.17 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.17 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.16 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.16 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.16 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.14 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.13 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.13 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.12 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.11 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.1 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.09 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.09 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.08 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.08 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.08 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.08 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.07 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.07 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.07 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.06 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.06 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.04 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.0 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.0 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.0 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 98.97 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.53 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.95 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 98.93 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 98.92 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 98.91 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 98.91 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 98.9 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.9 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 98.9 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 98.89 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 98.88 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 98.85 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 98.85 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 98.82 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.78 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 98.76 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.74 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.72 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.71 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 98.64 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.63 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 98.61 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 98.6 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.57 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.56 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.52 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.51 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.48 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.48 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.47 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 98.46 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.43 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.39 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.36 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.33 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.32 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.27 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 98.23 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.17 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.11 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.05 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.01 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 97.95 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 97.92 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 97.92 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 97.84 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 97.72 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.7 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 97.69 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.68 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 97.68 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 97.55 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 97.48 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 97.33 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 97.24 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 96.72 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 96.51 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 96.38 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 96.36 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 96.27 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 96.25 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 96.13 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 96.0 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 95.97 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 95.87 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 95.66 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 95.62 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 95.6 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 95.6 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 95.59 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 95.44 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 95.36 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 95.27 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 95.08 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 94.84 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 94.74 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 94.12 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 94.0 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 93.99 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 93.94 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 93.53 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 93.18 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 92.89 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 92.86 | |
| 1t1v_A | 93 | SH3BGRL3, SH3 domain-binding glutamic acid-rich pr | 92.51 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 92.48 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 92.43 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 92.31 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 91.89 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 91.84 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 91.42 | |
| 2axo_A | 270 | Hypothetical protein ATU2684; alpha beta protein., | 90.75 | |
| 2ct6_A | 111 | SH3 domain-binding glutamic acid-rich-like protein | 90.2 | |
| 3l9s_A | 191 | Thiol:disulfide interchange protein; thioredoxin-f | 89.03 | |
| 3c7m_A | 195 | Thiol:disulfide interchange protein DSBA-like; red | 88.91 | |
| 3l78_A | 120 | Regulatory protein SPX; transcription, transcripti | 88.6 | |
| 1u6t_A | 121 | SH3 domain-binding glutamic acid-rich-like protein | 88.51 | |
| 3tdg_A | 273 | DSBG, putative uncharacterized protein; thioredoxi | 87.92 | |
| 3fz4_A | 120 | Putative arsenate reductase; APC61768, structural | 87.69 | |
| 1aba_A | 87 | Glutaredoxin; electron transport; HET: MES; 1.45A | 87.56 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 87.46 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 87.14 | |
| 1z3e_A | 132 | Regulatory protein SPX; bacterial transcription re | 86.83 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 86.77 | |
| 2wci_A | 135 | Glutaredoxin-4; redox-active center, iron-sulfur c | 86.07 | |
| 3gx8_A | 121 | Monothiol glutaredoxin-5, mitochondrial; TRX fold, | 85.98 | |
| 3gkx_A | 120 | Putative ARSC family related protein; ARSC family | 85.77 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 85.68 | |
| 3ipz_A | 109 | Monothiol glutaredoxin-S14, chloroplastic; electro | 85.29 | |
| 3zyw_A | 111 | Glutaredoxin-3; metal binding protein; 1.84A {Homo | 85.13 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 84.82 | |
| 2wem_A | 118 | Glutaredoxin-related protein 5; chromosome 14 open | 83.25 | |
| 3fhk_A | 147 | UPF0403 protein YPHP; disulfide isomerase, thiored | 80.71 | |
| 1s3c_A | 141 | Arsenate reductase; ARSC, arsenite, oxidoreductase | 80.61 | |
| 2jvx_A | 28 | NF-kappa-B essential modulator; CCHC classical zin | 80.55 |
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=271.65 Aligned_cols=170 Identities=36% Similarity=0.602 Sum_probs=156.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|++||+|+++++. |.+| ++++|+|++||++||+||++.|||+|+.|+..|++.+++|+++|+++|+|
T Consensus 23 ~~VG~~APdF~l~a~~------d~~~----~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigi 92 (216)
T 3sbc_A 23 AQVQKQAPTFKKTAVV------DGVF----DEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFA 92 (216)
T ss_dssp CCTTSBCCCCCEEEEE------TTEE----EEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred hhcCCcCCCCCCcceE------CCCC----cEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEe
Confidence 6899999999998432 4566 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
|.|+.+.+.+|++.... ..+++||+++|+++++++.||++ ...|++.|++||||++|+|+++.+++.+.+++++++
T Consensus 93 S~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEi 172 (216)
T 3sbc_A 93 STDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEA 172 (216)
T ss_dssp ESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred ecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHH
Confidence 99999999999976432 34689999999999999999999 777888999999999999999999889999999999
Q ss_pred HHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 158 LRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
|++|+++| +++.||+||+||++||
T Consensus 173 Lr~l~AlQ~~~~~~~~~Pa~W~~G~~~i 200 (216)
T 3sbc_A 173 LRLVEAFQWTDKNGTVLPCNWTPGAATI 200 (216)
T ss_dssp HHHHHHHHHHHHHCCBBCTTCCTTSCCB
T ss_pred HHHHHHhhhHhhcCCCcCCCCCCCCcee
Confidence 99999999 7889999999999986
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=268.93 Aligned_cols=171 Identities=35% Similarity=0.661 Sum_probs=142.8
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|++||+|+++++.+ |.+| ++++|+||+||++||+||++.|||+|+.|+..|++++++|+++|++||||
T Consensus 26 ~~vG~~APdF~~~a~l~-----d~~g----~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigi 96 (219)
T 3tue_A 26 AKINSPAPSFEEVALMP-----NGSF----KKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLAC 96 (219)
T ss_dssp CCTTSBCCCCEEEEECT-----TSCE----EEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEE
T ss_pred cccCCcCCCCccccccc-----CCCC----cEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEe
Confidence 47999999999764332 6788 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcC---CCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENS---NLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
|.|+...+.+|+++.. ...+++||+++|+++++++.|||+ ...|++.|++||||++|+|+++.+++....++++++
T Consensus 97 S~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~Ev 176 (219)
T 3tue_A 97 SIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEV 176 (219)
T ss_dssp ESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHH
T ss_pred eCCchhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHH
Confidence 9999999999997642 234689999999999999999999 777888999999999999999998888999999999
Q ss_pred HHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 158 LRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
|++|+++| +++.||+||++|+++|
T Consensus 177 Lr~l~aLQ~~~~~~~~~Pa~W~~G~~~i 204 (219)
T 3tue_A 177 LRLLEAFQFVEKHGEVCPANWKKGDPGM 204 (219)
T ss_dssp HHHHHHHHHHHHC---------------
T ss_pred HHHHHHhhhHHhcCCCcCCCCCCCCccc
Confidence 99999998 5789999999999986
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=255.76 Aligned_cols=171 Identities=30% Similarity=0.550 Sum_probs=139.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+++|+|++++.. |.+| ++++|++++||++||+||+++||++|+.+++.|++++++|+++|++||+
T Consensus 61 ~l~vG~~aPdF~l~~l~------d~~G----~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~ 130 (254)
T 3tjj_A 61 KAKISKPAPYWEGTAVI------DGEF----KELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVA 130 (254)
T ss_dssp CCCTTSBCCCCEEEEEE------TTEE----EEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEE
T ss_pred ccCCCCCCCCcEeeeec------CCCC----cEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence 36799999999988321 4467 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCc---ccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLY---KLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||.|+.+.+++|++++...+ +++|++++|++.++++.||+. ...|.+.|++||||++|+|++++.++....+++++
T Consensus 131 IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~e 210 (254)
T 3tjj_A 131 CSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDE 210 (254)
T ss_dssp EESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred EcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 99999999999998653322 689999999999999999998 55577789999999999999999877778889999
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+++.|++++ ++..||+||++|++||
T Consensus 211 il~~L~alq~~~~~~~~cp~~W~~g~~~~ 239 (254)
T 3tjj_A 211 TLRLVQAFQYTDKHGEVAPAGWKPGSETI 239 (254)
T ss_dssp HHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHhhccccccCccccCCCCCCCcee
Confidence 999999988 5789999999999986
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=250.71 Aligned_cols=170 Identities=32% Similarity=0.572 Sum_probs=151.5
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++++.. |.+| ++++|++++||++||+||+++|||+|+.+++.|++++++|+++|++||+|
T Consensus 48 l~vG~~aPdF~l~~~~------d~~G----~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~I 117 (240)
T 3qpm_A 48 AKISKPAPQWEGTAVI------NGEF----KELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVAC 117 (240)
T ss_dssp CCTTSBCCCCEEEEEE------TTEE----EEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCCCCCCCCcEeeeee------CCCC----cEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5799999999988321 3456 79999999999999999988999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCCC---cccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNL---YKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
|.|+.+.+++|++++... .+++|++++|++.++++.||+. ...|+..|++||||++|+|++++.++....++++++
T Consensus 118 s~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~ei 197 (240)
T 3qpm_A 118 SVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDET 197 (240)
T ss_dssp ESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred ECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHH
Confidence 999999999999875322 3689999999999999999998 556777899999999999999998777778899999
Q ss_pred HHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 158 LRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++.|++++ .+..||+||++|++||
T Consensus 198 l~~l~~lq~~~~~~~~cp~~W~~g~~~~ 225 (240)
T 3qpm_A 198 LRLVQAFQYTDKHGEVCPAGWKPGSDTI 225 (240)
T ss_dssp HHHHHHHHHHHHHSCBBCTTCCTTSCCB
T ss_pred HHHHHHhhhhhhcCCccCCCCCCCCcee
Confidence 99999988 4789999999999986
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=237.99 Aligned_cols=168 Identities=31% Similarity=0.568 Sum_probs=147.4
Q ss_pred ccCccCCCcEEecccCCCCCCCC-CcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEE-NNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~-~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
.+|+++|+|+++ |. +| ..++++|++++||++||+||+++|||+|+.+++.|++++++|++++++||+|
T Consensus 2 ~~G~~aP~f~l~---------~~~~G--~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~I 70 (186)
T 1n8j_A 2 LINTKIKPFKNQ---------AFKNG--EFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSV 70 (186)
T ss_dssp CTTCBCCCCEEE---------EEETT--EEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCCcCCCcEee---------cccCC--cceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 589999999999 66 35 1148999999999999999977999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
|.|+++.+++|++++....+++|++++|+++++++.||+. ...|++.|++||||++|+|++++.+.....++.+++++.
T Consensus 71 s~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~ 150 (186)
T 1n8j_A 71 STDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRK 150 (186)
T ss_dssp ESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence 9999999999999864344789999999999999999997 444556799999999999999997655556789999999
Q ss_pred HHhhcc-----CCccccCCCCCCCCC
Q psy2878 161 LDAIQT-----GKLCACNRTLNGKTL 181 (181)
Q Consensus 161 l~~l~~-----~~~~~~~~~~~~~~~ 181 (181)
|++++. +.+||+||++|++++
T Consensus 151 l~~l~~~~~~p~~~~p~~w~~~~~~~ 176 (186)
T 1n8j_A 151 IKAAQYVAAHPGEVCPAKWKEGEATL 176 (186)
T ss_dssp HHHHHHHHHSTTCBBCTTCCTTSCCB
T ss_pred HHHHHHHhhcCCCccCCCCCCCCccc
Confidence 998874 789999999999875
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-39 Score=242.79 Aligned_cols=170 Identities=31% Similarity=0.553 Sum_probs=148.5
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++++.. |.+| ++++|++++||++||+||+++|||+|+.+++.|++++++|++++++||+|
T Consensus 19 ~~~G~~aP~f~l~~~~------~~~g----~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~I 88 (211)
T 2pn8_A 19 YFQSMPAPYWEGTAVI------DGEF----KELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVAC 88 (211)
T ss_dssp CCSSCBCCCCEEEEEE------TTEE----EEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCCCCcCCCeEeeccc------CCCC----cEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6789999999999210 1357 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCCC---cccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNL---YKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
|.|+++.+++|++++... .+++|++++|++.++++.||+. ...|...|++||||++|+|++++.+.....++.+++
T Consensus 89 s~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~el 168 (211)
T 2pn8_A 89 SVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDET 168 (211)
T ss_dssp ESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred ECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 999999999999865222 2678999999999999999997 444556899999999999999997666666789999
Q ss_pred HHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 158 LRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++.|++++ .+..||+||++|+++|
T Consensus 169 l~~l~~l~~~~~~~~~~p~~w~~g~~~~ 196 (211)
T 2pn8_A 169 LRLVQAFQYTDKHGEVCPAGWKPGSETI 196 (211)
T ss_dssp HHHHHHHHHHHHHCCBBCTTCCTTSCCB
T ss_pred HHHHHHhhhcccCCcccCCCCCCCCccc
Confidence 99999987 5789999999999885
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=238.37 Aligned_cols=171 Identities=34% Similarity=0.587 Sum_probs=137.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+++|+|++++.. +.+| ++++|++++||++||+||+++|||+|+.+++.|++++++|++++++||+
T Consensus 26 ~l~~G~~aP~f~l~~~~------~~~g----~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~ 95 (220)
T 1zye_A 26 APAVTQHAPYFKGTAVV------SGEF----KEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVA 95 (220)
T ss_dssp -CCTTSBCCCCEEEEEC------SSSE----EEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred cccCCCCCCCcEEEeee------CCCC----cEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 36799999999998422 4678 9999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCc---ccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLY---KLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||.|+.+.+++|++++.... +++|++++|++.++++.||+. ...|...|++||||++|+|++++.+......+.++
T Consensus 96 Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~e 175 (220)
T 1zye_A 96 VSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEE 175 (220)
T ss_dssp EESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred EECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHH
Confidence 99999999999998753332 679999999999999999997 55566789999999999999999766666788999
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++++|++++ .+..||++|++|+++|
T Consensus 176 ll~~l~~l~~~~~~~~~cp~~W~~g~~~~ 204 (220)
T 1zye_A 176 TLRLVKAFQFVEAHGEVSPANWTPESPTI 204 (220)
T ss_dssp HHHHHHHHHHTTC----------------
T ss_pred HHHHHHHhhhhcccCCccCCCCCCCCcee
Confidence 999999887 4678999999999875
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=236.68 Aligned_cols=170 Identities=35% Similarity=0.635 Sum_probs=149.4
Q ss_pred CCccCccCCCcEEecccCCCCCCCC--CcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~ 77 (181)
++.+|+++|+|+++ +. +| .+++++|+++ +||++||+||+++|||+|+.+++.|++++++|++.+++
T Consensus 20 ~l~~G~~aP~f~l~---------~~~~~G--~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~ 88 (213)
T 2i81_A 20 PTYVGKEAPFFKAE---------AVFGDN--SFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVE 88 (213)
T ss_dssp CCCBTSBCCCCEEE---------EECTTS--CEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEE
T ss_pred cccCCCcCCCeEee---------ccccCC--ceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 46899999999999 66 55 2358999999 99999999999999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 78 LLGGSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
||+||.|+++.+++|++++.. ..+++|++++|++.++++.||+....|+..|++||||++|+|++++.+.....++.
T Consensus 89 vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~ 168 (213)
T 2i81_A 89 LLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSV 168 (213)
T ss_dssp EEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCH
Confidence 999999999999999886532 22689999999999999999987333557899999999999999997666667789
Q ss_pred HHHHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 155 IETLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 155 ~~ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++++++|++++ .+.+||+||++|+++|
T Consensus 169 ~ell~~l~~l~~~~~~~~~cp~~w~~g~~~~ 199 (213)
T 2i81_A 169 DEILRIIDAIQHHEKYGDVCPANWQKGKVSM 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHCCBCCTTCCTTSCCB
T ss_pred HHHHHHHHHHHhhhhcCCCcCCCCCcCCccc
Confidence 99999999988 6789999999999875
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=233.71 Aligned_cols=170 Identities=35% Similarity=0.643 Sum_probs=150.0
Q ss_pred CCccCccCCCcEEecccCCCCCCCC--CcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
++.+|+++|+|+++ +. +| .+++++|++++||++||+||+++||++|+.+++.|++++++|++.+++|
T Consensus 5 ~~~~G~~aP~f~l~---------~~~~~g--~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~v 73 (202)
T 1uul_A 5 EAEDLHPAPDFNET---------ALMPNG--TFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEV 73 (202)
T ss_dssp CCCTTSBCCCCEEE---------EECTTS--CEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEE
T ss_pred cccCCCcCCCcEee---------eeecCC--CccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEE
Confidence 46899999999999 44 33 1268999999999999999989999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHcCCC---cccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 79 LGGSSDNEFVKLAWRRENSNL---YKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
|+||.|+.+.+++|++++... .+++|++++|.+.++++.||+. ...|...|++||||++|+|++++.+.....++.
T Consensus 74 i~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~ 153 (202)
T 1uul_A 74 LACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDV 153 (202)
T ss_dssp EEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCH
T ss_pred EEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCH
Confidence 999999999999999875322 2688999999999999999998 555667899999999999999997666667889
Q ss_pred HHHHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 155 IETLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 155 ~~ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+++++.|++++ .+..||++|++|+++|
T Consensus 154 ~ell~~l~~l~~~~~~~~~~p~~w~~g~~~~ 184 (202)
T 1uul_A 154 DEALRLVKAFQFVEKHGEVCPANWKPGDKTM 184 (202)
T ss_dssp HHHHHHHHHHHHHHHHSCBBCTTCCTTSCCB
T ss_pred HHHHHHHHHhhhhhhcCCccCCCcCCCCcee
Confidence 99999999988 5789999999999985
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=241.82 Aligned_cols=166 Identities=26% Similarity=0.411 Sum_probs=146.4
Q ss_pred CccCccCCCcEEecccCCCCCCCC--CcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
+.+|+.+|+|++. +. +| +++|++++|| ++||+||+++|||+|+.+++.|++++++|+++|+++
T Consensus 3 l~iG~~aP~F~l~---------~~~~~G-----~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~v 68 (220)
T 1xcc_A 3 YHLGATFPNFTAK---------ASGIDG-----DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKL 68 (220)
T ss_dssp CCTTCBCCCCEEC---------BTTCSS-----CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEE
T ss_pred CCCCCCCCCcEee---------cccCCC-----cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 7899999999999 66 65 6999999997 899999899999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHcC---CCcccceeEEEcCCchHHHHhCCC-CC----CC--cceeeEEEEcCCCcEEEEEeccC
Q psy2878 79 LGGSSDNEFVKLAWRRENS---NLYKLNHWQFSDTNGSLIDQLGIR-HE----TG--VALRATFIFDPQNIIQHITVNNL 148 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~gv~-~~----~g--~~~p~~~liD~~g~i~~~~~~~~ 148 (181)
|+||.|+.+.+++|.+... ...+++||+++|+++++++.||+. .. .| ...|++||||++|+|++++.++.
T Consensus 69 i~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~ 148 (220)
T 1xcc_A 69 IGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPA 148 (220)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECT
T ss_pred EEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCC
Confidence 9999999999999988421 124889999999999999999997 21 12 35789999999999999998777
Q ss_pred CCCCCHHHHHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 149 NVGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 149 ~~~~~~~~ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+.+++.+++++.|+++| ++..||+||++|+++|
T Consensus 149 ~~g~~~~ell~~i~~lq~~~~~~~~~p~~w~~g~~~~ 185 (220)
T 1xcc_A 149 TTGRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCC 185 (220)
T ss_dssp TBCCCHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEE
T ss_pred CCCCCHHHHHHHHHHHHhhhcCCcccCCCcCcCCceE
Confidence 77789999999999998 4678999999999974
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=243.79 Aligned_cols=166 Identities=23% Similarity=0.379 Sum_probs=147.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
+.+|+.+|+|++. +.+| +++|++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||+
T Consensus 3 l~iG~~aPdF~l~---------~~~G-----~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vig 68 (233)
T 2v2g_A 3 ITLGEVFPNFEAD---------STIG-----KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIA 68 (233)
T ss_dssp CCTTCBCCCCEEE---------ETTC-----CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEE
T ss_pred CCCCCCCCCcEEe---------cCCC-----CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEE
Confidence 7899999999999 7777 5899999997 99999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCC--Cc--ccceeEEEcCCchHHHHhCCC-CC----CC--cceeeEEEEcCCCcEEEEEeccCC
Q psy2878 81 GSSDNEFVKLAWRRENSN--LY--KLNHWQFSDTNGSLIDQLGIR-HE----TG--VALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~--~~--~~~~~~~~D~~~~~~~~~gv~-~~----~g--~~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
||.|+.+.+++|++.... .. +++||+++|++.++++.||+. .. .| ...|++||||++|+|++++.++..
T Consensus 69 IS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~ 148 (233)
T 2v2g_A 69 LSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPAT 148 (233)
T ss_dssp EESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTT
T ss_pred EcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCC
Confidence 999999999999985321 23 688999999999999999997 21 12 357899999999999999987777
Q ss_pred CCCCHHHHHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 150 VGRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 150 ~~~~~~~ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
..++.+++++.|+++| .+.+||+||++|++||
T Consensus 149 ~gr~~~eilr~l~~Lq~~~~~~~~~p~~W~~g~~~~ 184 (233)
T 2v2g_A 149 TGRNFSEILRVIDSLQLTAQKKVATPADWQPGDRCM 184 (233)
T ss_dssp BCCCHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEE
T ss_pred CCCCHHHHHHHHHHHHhhccCCccCCCCcCcCCceE
Confidence 7789999999999998 4678999999999875
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=235.88 Aligned_cols=169 Identities=34% Similarity=0.562 Sum_probs=137.2
Q ss_pred CccCccCCCcEEecccCCCCCCCC--CcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
+.+|+++|+|+++ |. +| .+++++|+++ +||++||+||+++|||+|+.+++.|++++++|++.+++|
T Consensus 25 l~~G~~aP~F~l~---------~~~~~G--~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~v 93 (221)
T 2c0d_A 25 SLVTKKAYNFTAQ---------GLNKNN--EIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVEL 93 (221)
T ss_dssp -CTTSBCCCCEEE---------EECTTS--CEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEE
T ss_pred CCCCCCCCCeEEe---------ccccCC--CccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEE
Confidence 5799999999999 66 55 2358999999 999999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHcCCC---cccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 79 LGGSSDNEFVKLAWRRENSNL---YKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
|+||.|+++.+++|++++... .+++|++++|+++++++.||+....|...|++||||++|+|++.+.+......+.+
T Consensus 94 v~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ 173 (221)
T 2c0d_A 94 LGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQ 173 (221)
T ss_dssp EEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred EEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHH
Confidence 999999999999999875221 16789999999999999999851123467999999999999999976555567899
Q ss_pred HHHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 156 ETLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 156 ~ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++++.|++++ .+..||++|.+|+++|
T Consensus 174 ell~~l~~L~~~~~~~~~cp~~W~~g~~~~ 203 (221)
T 2c0d_A 174 EVLRTIDSIIHVDTSGEVCPINWKKGQKAF 203 (221)
T ss_dssp HHHHHHHHHHHHHHHCCSCC----------
T ss_pred HHHHHHHHHhhhhcCCCcCCCCCCCCCccc
Confidence 9999999887 5789999999999875
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=239.37 Aligned_cols=167 Identities=26% Similarity=0.370 Sum_probs=146.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
++.+|+.+|+|++. +.+| +++|++++|| ++||+||+++|||+|+.+++.|++++++|+++|++||
T Consensus 4 ~l~~G~~aP~F~l~---------~~~G-----~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi 69 (224)
T 1prx_A 4 GLLLGDVAPNFEAN---------TTVG-----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLI 69 (224)
T ss_dssp -CCTTCBCCCCEEE---------ETTE-----EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred cCCCcCCCCCcEEe---------cCCC-----CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 36799999999999 7776 6999999997 8999998899999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCC---C---cccceeEEEcCCchHHHHhCCC-CC----C--CcceeeEEEEcCCCcEEEEEec
Q psy2878 80 GGSSDNEFVKLAWRRENSN---L---YKLNHWQFSDTNGSLIDQLGIR-HE----T--GVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~---~---~~~~~~~~~D~~~~~~~~~gv~-~~----~--g~~~p~~~liD~~g~i~~~~~~ 146 (181)
+||.|+.+.+++|+++... . .+++|++++|+++++++.||+. .. . ....|++||||++|+|++++.+
T Consensus 70 ~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~ 149 (224)
T 1prx_A 70 ALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILY 149 (224)
T ss_dssp EEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEEC
T ss_pred EEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEec
Confidence 9999999999999986211 0 3889999999999999999997 21 1 2357899999999999999987
Q ss_pred cCCCCCCHHHHHHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 147 NLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 147 ~~~~~~~~~~ll~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
+...+++.+++++.|++++. +..||+||++|++||
T Consensus 150 ~~~~gr~~~eil~~i~~l~~~~~~~~~~p~~W~~g~~~~ 188 (224)
T 1prx_A 150 PATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVM 188 (224)
T ss_dssp CTTBCCCHHHHHHHHHHHHHHHHHCEEBCTTCCTTSCEE
T ss_pred CCCCCCCHHHHHHHHHHHHhhccCCcCCCCCCCCCCceE
Confidence 66677899999999999984 678999999999874
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=237.16 Aligned_cols=171 Identities=33% Similarity=0.598 Sum_probs=150.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+++|+|++++.. |.+| ++++|++++||++||+||.++||++|+.+++.|++++++|++++++||+
T Consensus 39 ~l~~G~~aP~f~l~~~~------d~~G----~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~ 108 (222)
T 3ztl_A 39 VLLPNRPAPEFKGQAVI------NGEF----KEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIA 108 (222)
T ss_dssp -CCSSEECCCCEEEEEE------TTEE----EEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred cccCCCCCCCeEEeccc------CCCC----cEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEE
Confidence 36899999999999321 2367 8999999999999999997799999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCC---cccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNL---YKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||.|+.+...+|.+.+... .+++|+++.|++.++++.|++. ...|+..|++||||++|+|++++.+.......+++
T Consensus 109 Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~ 188 (222)
T 3ztl_A 109 CSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDE 188 (222)
T ss_dssp EESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHH
T ss_pred EECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 9999999999999875332 2789999999999999999998 55566789999999999999999866666678999
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+++.|++++ .+.+||++|++|+++|
T Consensus 189 il~~l~~l~~~~~~~~~c~~~w~~~~~~~ 217 (222)
T 3ztl_A 189 TLRLLDAFQFVEKHGEVCPVNWKRGQHGI 217 (222)
T ss_dssp HHHHHHHHHHHHHHSCBBCTTCCTTSCCB
T ss_pred HHHHHHHhhcccccCccCCcCcCCCCccc
Confidence 999999887 5689999999999885
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=227.52 Aligned_cols=147 Identities=27% Similarity=0.423 Sum_probs=128.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+++|++||+|+++ |.+| ++++|++++||++||+||+++|||+|+.+++.|+++++++++.++.+++
T Consensus 3 ~l~vG~~aPdF~l~---------~~~G----~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~ 69 (157)
T 4g2e_A 3 MVEIGELAPDFELP---------DTEL----KKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLG 69 (157)
T ss_dssp CCCTTSBCCCCEEE---------BTTS----CEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEE
T ss_pred cCCCCCCCcCeEeE---------CCCC----CEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEee
Confidence 78999999999999 8999 9999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCC-----cceeeEEEEcCCCcEEEEEeccCCC-CCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETG-----VALRATFIFDPQNIIQHITVNNLNV-GRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g-----~~~p~~~liD~~g~i~~~~~~~~~~-~~~ 153 (181)
||.|+++.+++|++++ +++|++++|+++++++.||+. ...+ .+.|++||||++|+|++++++.... ..+
T Consensus 70 vs~d~~~~~~~~~~~~----~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~ 145 (157)
T 4g2e_A 70 ISVDPPFSNKAFKEHN----KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPP 145 (157)
T ss_dssp EESSCHHHHHHHHHHT----TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCC
T ss_pred ecccchhHHHHHHHHc----CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCC
Confidence 9999999999999998 999999999999999999996 2222 3578999999999999999754443 457
Q ss_pred HHHHHHHHHhh
Q psy2878 154 PIETLRILDAI 164 (181)
Q Consensus 154 ~~~ll~~l~~l 164 (181)
.++++++|++|
T Consensus 146 ~~eil~~l~~L 156 (157)
T 4g2e_A 146 YDEIEKVVKSL 156 (157)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 89999999886
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=227.91 Aligned_cols=167 Identities=31% Similarity=0.586 Sum_probs=137.5
Q ss_pred CccCccCCCcEEecccCCCCCCCCCccccee----eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFK----VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~----~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~ 77 (181)
+.+|+.+|+|++. |.+| + ++++++++||++||+||+++||++|+.+++.|++++++|++++++
T Consensus 1 ~~~G~~~P~f~l~---------~~~g----~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~ 67 (187)
T 1we0_A 1 SLIGTEVQPFRAQ---------AFQS----GKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVE 67 (187)
T ss_dssp CCTTCBCCCCEEE---------EECS----SSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCcCCCeEEe---------ccCC----CccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCE
Confidence 4689999999999 8888 7 999999999999999998999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+++||.|+++.+++|++++....+++|+++.|++.++++.||+. ...|...|++||||++|+|++++.+......+.++
T Consensus 68 vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~ 147 (187)
T 1we0_A 68 VYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDAST 147 (187)
T ss_dssp EEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTH
T ss_pred EEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 99999999999999988752223689999999999999999997 44455789999999999999999765555567888
Q ss_pred HHHHHHhhcc-----CCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQT-----GKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~~-----~~~~~~~~~~~~~~~ 181 (181)
+++.|++++. +..||++|.+|+++|
T Consensus 148 l~~~l~~l~~~~~~~~~~~p~~w~~~~~~~ 177 (187)
T 1we0_A 148 LINKVKAAQYVRENPGEVCPAKWEEGGETL 177 (187)
T ss_dssp HHHHHHHHHHHHTSTTCCC-----------
T ss_pred HHHHHHHHhhhhhCCCcccccccccCCcee
Confidence 8888888774 689999999999986
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=230.16 Aligned_cols=148 Identities=21% Similarity=0.350 Sum_probs=134.3
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC--CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF--PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~--~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
|+++|++||+|+++ |.+| ++++|+++ +||++||+||+++|||+|+.+++.|++++++|++.|+.+
T Consensus 4 ml~vG~~aPdF~l~---------~~~G----~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~v 70 (164)
T 4gqc_A 4 LVELGEKAPDFTLP---------NQDF----EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEV 70 (164)
T ss_dssp CCCTTSBCCCCEEE---------BTTS----CEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEE
T ss_pred cccCCCCCcCcEeE---------CCCC----CEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceE
Confidence 78999999999999 8999 99999998 899999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC-C---CcceeeEEEEcCCCcEEEEEeccCCC-CC
Q psy2878 79 LGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE-T---GVALRATFIFDPQNIIQHITVNNLNV-GR 152 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~-~---g~~~p~~~liD~~g~i~~~~~~~~~~-~~ 152 (181)
++||.|+++.+++|++++ +++||+++|+++++++.||++ .. . +.+.|++||||++|+|++++++.... ..
T Consensus 71 v~is~d~~~~~~~~~~~~----~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~ 146 (164)
T 4gqc_A 71 LAISVDSPWCLKKFKDEN----RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEP 146 (164)
T ss_dssp EEEESSCHHHHHHHHHHT----TCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCC
T ss_pred EEecCCCHHHHHHHHHhc----CcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 999999999999999998 999999999999999999997 22 1 24578999999999999999754443 44
Q ss_pred CHHHHHHHHHhhc
Q psy2878 153 NPIETLRILDAIQ 165 (181)
Q Consensus 153 ~~~~ll~~l~~l~ 165 (181)
+.++++++++++.
T Consensus 147 ~~~eil~~l~~l~ 159 (164)
T 4gqc_A 147 DYDEVVREANKIA 159 (164)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7999999998874
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=237.35 Aligned_cols=166 Identities=25% Similarity=0.467 Sum_probs=147.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeec-CCC--CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITE-SSF--PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l-~~~--~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~ 77 (181)
|+.+|+.+|+|++. +.+| +++| +++ +||++||+||+++|||+|+.+++.|++++++|+++|++
T Consensus 4 ~~~iG~~aPdF~l~---------~~~G-----~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~ 69 (249)
T 3a2v_A 4 IPLIGERFPEMEVT---------TDHG-----VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVD 69 (249)
T ss_dssp ECCTTSBCCCEEEE---------ETTE-----EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEE
T ss_pred cCCCCCCCCCeEEE---------cCCC-----CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcE
Confidence 57899999999999 7777 4999 999 99999999988999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHcCC--CcccceeEEEcCCchHHHHhCCC-CCCCc-ceeeEEEEcCCCcEEEEEeccCCCCCC
Q psy2878 78 LLGGSSDNEFVKLAWRRENSN--LYKLNHWQFSDTNGSLIDQLGIR-HETGV-ALRATFIFDPQNIIQHITVNNLNVGRN 153 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~gv~-~~~g~-~~p~~~liD~~g~i~~~~~~~~~~~~~ 153 (181)
||+||.|+.+.+.+|.+.... ..+++||+++|++.++++.||+. ...|. ..|++||||++|+|++++.+..+.+++
T Consensus 70 VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~ 149 (249)
T 3a2v_A 70 LIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRL 149 (249)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCC
T ss_pred EEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccch
Confidence 999999999999999885321 12789999999999999999998 44454 689999999999999999877777889
Q ss_pred HHHHHHHHHhhc----cCCccccCCCC-----CCCCC
Q psy2878 154 PIETLRILDAIQ----TGKLCACNRTL-----NGKTL 181 (181)
Q Consensus 154 ~~~ll~~l~~l~----~~~~~~~~~~~-----~~~~~ 181 (181)
.+++++.|+++| ++..||+|| + |++||
T Consensus 150 ~~Ellr~I~alq~~~~~~~~~Pa~W-~~~~~~g~~~~ 185 (249)
T 3a2v_A 150 VDEILRIVKALKLGDSLKRAVPADW-PNNEIIGEGLI 185 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTCBBCTTT-TSBTTTBTCEE
T ss_pred hHHHHHHHHHHHhccccCccCCCCC-CCCCCCCCCee
Confidence 999999999998 478999999 9 88874
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=225.05 Aligned_cols=168 Identities=36% Similarity=0.648 Sum_probs=143.5
Q ss_pred ccCccCCCcEEecccCCCCCCCC--CcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
++|+++|+|+++ +. +| .+++++|+++ +||++||+||+++||++|+.+++.|++++++|++.+++||
T Consensus 1 ~~G~~aP~f~l~---------~~~~~G--~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv 69 (192)
T 2h01_A 1 AFQGQAPSFKAE---------AVFGDN--TFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELL 69 (192)
T ss_dssp CCSSBCCCCEEE---------EECTTS--CEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEE
T ss_pred CCCCcCCCcEeE---------eeecCC--ceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 479999999999 66 55 2358999999 9999999999899999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+||.|+.+.+++|++++.. ..+++|++++|++.++++.||+....|+..|++||||++|+|++++.+......+.++
T Consensus 70 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~ 149 (192)
T 2h01_A 70 GCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDE 149 (192)
T ss_dssp EEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHH
T ss_pred EEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHH
Confidence 9999999999999987532 2268899999999999999998633355689999999999999999765556678899
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+++.|++++ .+..||++|++|+++|
T Consensus 150 l~~~l~~l~~~~~~~~~cp~~w~~~~~~~ 178 (192)
T 2h01_A 150 ILRLIDALQHHEKYGDVCPANWQKGKESM 178 (192)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCC----
T ss_pred HHHHHHHHhhhhhcCCCccCCCCCCCccc
Confidence 999999887 5789999999999875
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=222.32 Aligned_cols=178 Identities=41% Similarity=0.713 Sum_probs=136.6
Q ss_pred CccCccCCCcEEecccCCCCCC----CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLP----EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~----d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~ 77 (181)
+.+|+.+|+|++++..+++.+. +.+| .++++++++++||++||+||+++||++|+.+++.|++++++|++++++
T Consensus 4 l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G--~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~ 81 (195)
T 2bmx_A 4 LTIGDQFPAYQLTALIGGDLSKVDAKQPGD--YFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQ 81 (195)
T ss_dssp CCTTCBCCCCEEEEECSSCGGGSCCSSGGG--GEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEE
T ss_pred CCCCCcCCCcCcccccccccccccccccCC--CccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCE
Confidence 6899999999999432100000 0002 126899999999999999998999999999999999999999998999
Q ss_pred EEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
+++||.|+.+.+++|++++....+++|++++|++.++++.|++....|...|++||||++|+|++++.+......+.+++
T Consensus 82 vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 161 (195)
T 2bmx_A 82 ILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEV 161 (195)
T ss_dssp EEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHH
T ss_pred EEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHH
Confidence 99999999999999999865555889999999999999999997225557899999999999999997655556689999
Q ss_pred HHHHHhhccCCccccCCCCCCCCC
Q psy2878 158 LRILDAIQTGKLCACNRTLNGKTL 181 (181)
Q Consensus 158 l~~l~~l~~~~~~~~~~~~~~~~~ 181 (181)
++.|++++.+..||++|.+|++++
T Consensus 162 ~~~l~~l~~~~~~p~~w~~~~~~~ 185 (195)
T 2bmx_A 162 LRVLDALQSDELCASNWRKGDPTL 185 (195)
T ss_dssp HHHHHHHHC---------------
T ss_pred HHHHHHHhhCCCcCcccccCCccc
Confidence 999999999999999999999875
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=222.95 Aligned_cols=167 Identities=31% Similarity=0.547 Sum_probs=138.3
Q ss_pred CccCccCCCcEEecccCCCCCCCC--Cccccee---eeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEE--NNVSAFK---VITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~---~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~ 75 (181)
+.+|+++|+|+++ |. +| + +++|+++ +||++||+||+++||++|+.+++.|++++++|++.+
T Consensus 1 ~~~G~~~P~f~l~---------~~~~~G----~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~ 67 (198)
T 1zof_A 1 MVVTKLAPDFKAP---------AVLGNN----EVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG 67 (198)
T ss_dssp CCTTSBCCCCEEE---------EECTTS----CEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT
T ss_pred CCCCCcCCceEee---------cccCCC----cccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC
Confidence 4689999999999 77 88 8 9999999 999999999989999999999999999999999999
Q ss_pred cEEEEEecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCC
Q psy2878 76 AILLGGSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGR 152 (181)
Q Consensus 76 ~~vi~Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~ 152 (181)
+++++||.|+++.+++|+++... ..+++|+++.|++.++++.||+....|...|++||||++|+|++++.+......
T Consensus 68 v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~ 147 (198)
T 1zof_A 68 FNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGR 147 (198)
T ss_dssp EEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCC
T ss_pred CEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCC
Confidence 99999999999999999987211 138899999999999999999862235568999999999999999976555566
Q ss_pred CHHHHHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 153 NPIETLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 153 ~~~~ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+.+++++.|++++ ++..||++|.+|++++
T Consensus 148 ~~~~l~~~l~~l~~~~~~~~~~p~~w~~~~~~~ 180 (198)
T 1zof_A 148 NADEMLRMVDALLHFEEHGEVCPAGWRKGDKGM 180 (198)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCCC----------
T ss_pred CHHHHHHHHHHHHHhhccCCccCCcCcCCCccc
Confidence 7889999998887 6789999999999875
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=205.97 Aligned_cols=149 Identities=26% Similarity=0.390 Sum_probs=135.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCe-EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKW-KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~-~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+++|+++|+|++. |.+| +++++++++||+ +||+||+++||++|+.+++.|++++++|+++|+++|
T Consensus 1 ml~~G~~~P~f~l~---------~~~G----~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv 67 (161)
T 3drn_A 1 MVKVGDKAPLFEGI---------ADNG----EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVI 67 (161)
T ss_dssp -CCTTSBCCCCEEE---------ETTS----CEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEE
T ss_pred CCCCCCcCCCeEee---------cCCC----CEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 79999999999999 8999 999999999997 999999899999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
+||.|+++.+++|++++ +++|++++|.+.++++.||+... ..+.|++||||++|+|++.+.+........+++++
T Consensus 68 ~vs~d~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~~~-~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~ 142 (161)
T 3drn_A 68 GVSSDDINSHKRFKEKY----KLPFILVSDPDKKIRELYGAKGF-ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALK 142 (161)
T ss_dssp EEESCCHHHHHHHHHHT----TCCSEEEECTTSHHHHHTTCCCS-SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHh----CCCceEEECCcHHHHHHcCCCCc-CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHH
Confidence 99999999999999998 89999999999999999999711 23478999999999999999754566678899999
Q ss_pred HHHhhccC
Q psy2878 160 ILDAIQTG 167 (181)
Q Consensus 160 ~l~~l~~~ 167 (181)
.|++++.+
T Consensus 143 ~l~~l~~~ 150 (161)
T 3drn_A 143 ALKQIKEE 150 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 99999854
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=205.17 Aligned_cols=147 Identities=22% Similarity=0.330 Sum_probs=132.9
Q ss_pred CccCccCCCcE--EecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 2 KTIGQSLSSYR--VIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 2 l~~G~~~P~f~--l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
+.+|+++|+|+ +. |.+| +++++++++||++||+||.++|||+|+.+++.|++++++|+++|+++|
T Consensus 7 l~~G~~~P~f~~~l~---------~~~G----~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv 73 (163)
T 3gkn_A 7 AVLELPAATFDLPLS---------LSGG----TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKIL 73 (163)
T ss_dssp CCCCCCGGGGGCCEE---------CSTT----CEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cccCCcCCCcccccc---------CCCC----CEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEE
Confidence 67999999999 99 8999 999999999999999999779999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC--CCc----ceeeEEEEcCCCcEEEEEeccCCCCC
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE--TGV----ALRATFIFDPQNIIQHITVNNLNVGR 152 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~--~g~----~~p~~~liD~~g~i~~~~~~~~~~~~ 152 (181)
+||.|+++.+++|++++ +++|++++|++.++++.||+. .. .|. +.|++||||++|+|++.+ .+.....
T Consensus 74 ~vs~d~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~ 148 (163)
T 3gkn_A 74 GVSRDSVKSHDNFCAKQ----GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAG 148 (163)
T ss_dssp EEESSCHHHHHHHHHHH----CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-CSCCSTT
T ss_pred EEeCCCHHHHHHHHHHh----CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-cCCCccc
Confidence 99999999999999998 899999999999999999997 11 111 178999999999999999 5566667
Q ss_pred CHHHHHHHHHhhcc
Q psy2878 153 NPIETLRILDAIQT 166 (181)
Q Consensus 153 ~~~~ll~~l~~l~~ 166 (181)
+.+++++.|++++.
T Consensus 149 ~~~~il~~l~~l~~ 162 (163)
T 3gkn_A 149 HADAVLAALKAHAK 162 (163)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhc
Confidence 88999999998763
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=210.18 Aligned_cols=148 Identities=26% Similarity=0.355 Sum_probs=133.3
Q ss_pred CCccCcc----CCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCc
Q psy2878 1 MKTIGQS----LSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76 (181)
Q Consensus 1 ~l~~G~~----~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~ 76 (181)
++++|+. +|+|+++ |.+| ++++|++++||++||+||+++||++|+.+++.|++++++|+++|+
T Consensus 20 ~l~~Gd~ig~~aP~f~l~---------~~~G----~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~ 86 (179)
T 3ixr_A 20 HMNIGDTLNHSLLNHPLM---------LSGS----TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINA 86 (179)
T ss_dssp SSCTTCBCCHHHHHCCEE---------EGGG----EEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTE
T ss_pred ccCcCcccCCcCCCeeEE---------CCCC----CEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCC
Confidence 4678888 9999999 8999 999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC--CCc----ceeeEEEEcCCCcEEEEEeccCC
Q psy2878 77 ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE--TGV----ALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 77 ~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~--~g~----~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
+|++||.|+++.+++|++++ +++|++++|++.++++.||++ .. .|. +.|++||||++|+|++.+ .+..
T Consensus 87 ~vv~Vs~D~~~~~~~~~~~~----~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-~~~~ 161 (179)
T 3ixr_A 87 TVLGVSRDSVKSHDSFCAKQ----GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-RQVK 161 (179)
T ss_dssp EEEEEESCCHHHHHHHHHHH----TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-CSCC
T ss_pred EEEEEcCCCHHHHHHHHHHc----CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-cCCC
Confidence 99999999999999999998 999999999999999999997 21 121 368999999999999999 4556
Q ss_pred CCCCHHHHHHHHHhhcc
Q psy2878 150 VGRNPIETLRILDAIQT 166 (181)
Q Consensus 150 ~~~~~~~ll~~l~~l~~ 166 (181)
...+.+++++.|++++.
T Consensus 162 ~~~~~~~il~~l~~l~~ 178 (179)
T 3ixr_A 162 VPGHAEEVLNKLKAHAE 178 (179)
T ss_dssp STTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 67789999999998764
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=203.92 Aligned_cols=144 Identities=22% Similarity=0.268 Sum_probs=130.0
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+++|+|+++ |.+| ++++|++++||++||+||+++||++|+.+++.|++++++ .++++++
T Consensus 19 ~l~~G~~aP~f~l~---------~~~G----~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~ 82 (166)
T 3p7x_A 19 QINEGDFAPDFTVL---------DNDL----NQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLT 82 (166)
T ss_dssp CCCTTSBCCCCEEE---------CTTS----CEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEE
T ss_pred cCCCCCCCCCeEEE---------cCCC----CEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEE
Confidence 36799999999999 8999 999999999999999999999999999999999999988 6899999
Q ss_pred EecCCHHHHHHHHHHcCCCccc-ceeEEEcC-CchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEecc-CCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKL-NHWQFSDT-NGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNN-LNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~-~~~~~~D~-~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~-~~~~~~~~~ 156 (181)
||.|+++.+++|++++ ++ +|++++|+ +.++++.||+. ...|.+.|++||||++|+|++++... .....+.++
T Consensus 83 is~d~~~~~~~~~~~~----~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ 158 (166)
T 3p7x_A 83 ISADLPFAQKRWCASA----GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDA 158 (166)
T ss_dssp EESSCHHHHHHHHHHH----TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHH
T ss_pred EECCCHHHHHHHHHHc----CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHH
Confidence 9999999999999998 88 89999999 89999999998 45566689999999999999998643 334568899
Q ss_pred HHHHHHhh
Q psy2878 157 TLRILDAI 164 (181)
Q Consensus 157 ll~~l~~l 164 (181)
++++|+++
T Consensus 159 il~~l~~l 166 (166)
T 3p7x_A 159 ALAAYKNI 166 (166)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99999864
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=205.52 Aligned_cols=146 Identities=17% Similarity=0.335 Sum_probs=128.8
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCC-CCCCeEEEEEeeCCCCCCCh-hHHHHHHHHHHHHHhcCcEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESS-FPGKWKIFYFYPKDFTFVCP-TEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~-~~~~~l~~l~~~~~~~~~~vi 79 (181)
+.+|+++|+|+++. +.+| ++++|++ ++||++||+||+++|||+|+ .|++.|++++++|+++|+++|
T Consensus 15 ~~vG~~aPdf~l~~--------~~~g----~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv 82 (173)
T 3mng_A 15 IKVGDAIPAVEVFE--------GEPG----NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVV 82 (173)
T ss_dssp CCTTCBCCCCEEEC--------SSTT----CEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEE
T ss_pred CCCCCCCCCeEeee--------CCCC----CEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 67999999999983 5788 9999999 59999999999999999999 599999999999999999999
Q ss_pred E-EecCCHHHHHHHHHHcCCCcccc--eeEEEcCCchHHHHhCCC-CCC-----C--cceeeEEEEcCCCcEEEEEeccC
Q psy2878 80 G-GSSDNEFVKLAWRRENSNLYKLN--HWQFSDTNGSLIDQLGIR-HET-----G--VALRATFIFDPQNIIQHITVNNL 148 (181)
Q Consensus 80 ~-Is~d~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~gv~-~~~-----g--~~~p~~~liD~~g~i~~~~~~~~ 148 (181)
+ ||.|+++.+++|++++ +++ |++++|+++++++.||+. ... | .+.|++|||| +|+|++.++++.
T Consensus 83 ~~iS~D~~~~~~~f~~~~----~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~ 157 (173)
T 3mng_A 83 ACLSVNDAFVTGEWGRAH----KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPD 157 (173)
T ss_dssp EEEESSCHHHHHHHHHHT----TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTT
T ss_pred EEEcCCCHHHHHHHHHHh----CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCC
Confidence 7 9999999999999998 777 999999999999999998 321 2 3679999999 999999999777
Q ss_pred CCCCCHHHHHHHHHhh
Q psy2878 149 NVGRNPIETLRILDAI 164 (181)
Q Consensus 149 ~~~~~~~~ll~~l~~l 164 (181)
+.+++..++.+.|++|
T Consensus 158 ~~g~~~~~~~~vl~~l 173 (173)
T 3mng_A 158 GTGLTCSLAPNIISQL 173 (173)
T ss_dssp SSCSSTTSHHHHHHHC
T ss_pred CCCcchHHHHHHHHhC
Confidence 7777777766666643
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-33 Score=200.98 Aligned_cols=144 Identities=22% Similarity=0.308 Sum_probs=129.5
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+.+|+|+++ |.+| +++++++++||++||+||+++||++|+.+++.|++++++| .++++++|
T Consensus 16 ~~~G~~~P~f~l~---------~~~G----~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~i 80 (163)
T 1psq_A 16 LQVGDKALDFSLT---------TTDL----SKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTV 80 (163)
T ss_dssp CCTTSBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEE
T ss_pred CCCCCCCCCEEEE---------cCCC----cEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEE
Confidence 6789999999999 8999 9999999999999999998899999999999999999999 68999999
Q ss_pred ecCCHHHHHHHHHHcCCCccc-ceeEEEc-CCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEecc-CCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKL-NHWQFSD-TNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNN-LNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~-~~~~~~~~~l 157 (181)
|.|+++.+++|++++ ++ +|++++| +++++++.||+. ...|++.|++||||++|+|++.+.+. .....+.+++
T Consensus 81 s~d~~~~~~~~~~~~----~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~ 156 (163)
T 1psq_A 81 SMDLPFAQKRWCGAE----GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAA 156 (163)
T ss_dssp ESSCHHHHHHHHHHH----TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHH
T ss_pred ECCCHHHHHHHHHhc----CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHH
Confidence 999999999999998 88 9999999 899999999997 33466679999999999999999743 2345678999
Q ss_pred HHHHHhh
Q psy2878 158 LRILDAI 164 (181)
Q Consensus 158 l~~l~~l 164 (181)
++.|+++
T Consensus 157 l~~l~~l 163 (163)
T 1psq_A 157 IAAAKAL 163 (163)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999864
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=206.18 Aligned_cols=143 Identities=24% Similarity=0.379 Sum_probs=128.0
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++++|+++|+|+++ |.+| ++++|++++||++||+||+++||++|+.+++.|++++++| .+++||+
T Consensus 51 ~l~~G~~aPdf~l~---------d~~G----~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~ 115 (200)
T 3zrd_A 51 LPQIGDKAKDFTLV---------AKDL----SDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLC 115 (200)
T ss_dssp CCCTTCBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEE
T ss_pred cCCCCCCCCCeEEE---------CCCC----CEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEE
Confidence 47899999999999 8999 9999999999999999999999999999999999999999 6899999
Q ss_pred EecCCHHHHHHHHHHcCCCccc-ceeEEEcC-CchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEecc-CCCCCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKL-NHWQFSDT-NGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITVNN-LNVGRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~-~~~~~~D~-~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~~~-~~~~~~ 153 (181)
||.|+++.+++|++++ ++ +|++++|+ +.++++.||+. .. .|++.|++||||++|+|++++... .....+
T Consensus 116 Is~D~~~~~~~~~~~~----~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~ 191 (200)
T 3zrd_A 116 ISSDLPFAQSRFCGAE----GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPN 191 (200)
T ss_dssp EESSCHHHHTTCTTTT----TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC
T ss_pred EECCCHHHHHHHHHHc----CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCC
Confidence 9999999888888876 89 99999999 99999999997 32 455679999999999999999743 445667
Q ss_pred HHHHHHHHH
Q psy2878 154 PIETLRILD 162 (181)
Q Consensus 154 ~~~ll~~l~ 162 (181)
+++++++|+
T Consensus 192 ~~~~l~~Lk 200 (200)
T 3zrd_A 192 YDAALAALK 200 (200)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhC
Confidence 888888763
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=197.44 Aligned_cols=148 Identities=20% Similarity=0.380 Sum_probs=134.3
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|+.+|+.+|+|++. |.+| +++++++++|| ++||+||+++||++|+.+++.|+++++++++.+++++
T Consensus 8 ~~~~G~~~p~f~l~---------~~~G----~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv 74 (160)
T 1xvw_A 8 MLNVGATAPDFTLR---------DQNQ----QLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAAL 74 (160)
T ss_dssp CCCTTSBCCCCEEE---------CTTS----CEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEE
T ss_pred CCCCCCCCCCeEeE---------cCCC----CEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEE
Confidence 57899999999999 8999 99999999998 9999999899999999999999999999988899999
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcC--CchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDT--NGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+||.|+.+.+++|++++ +++|+++.|. +.++++.||+. ...+++.|++||||++|+|++++.+........++
T Consensus 75 ~is~d~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 150 (160)
T 1xvw_A 75 AISVGPPPTHKIWATQS----GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRL 150 (160)
T ss_dssp EEESCCHHHHHHHHHHH----TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHH
T ss_pred EEeCCCHHHHHHHHHhc----CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 99999999999999998 8899999995 89999999987 43466666999999999999999765555668999
Q ss_pred HHHHHHhhc
Q psy2878 157 TLRILDAIQ 165 (181)
Q Consensus 157 ll~~l~~l~ 165 (181)
++++|++++
T Consensus 151 l~~~l~~l~ 159 (160)
T 1xvw_A 151 WTDALAALT 159 (160)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 999999876
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=199.48 Aligned_cols=141 Identities=23% Similarity=0.375 Sum_probs=125.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+.+|+|+++ |.+| ++++|++++||++||+||+++||++|+.+++.|++++++| .+++||+|
T Consensus 17 ~~~G~~~P~f~l~---------~~~G----~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~I 81 (165)
T 1q98_A 17 PQVGEIVENFILV---------GNDL----ADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCI 81 (165)
T ss_dssp CCTTCBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEE
T ss_pred CCCCCCCCCeEEE---------CCCC----CEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEE
Confidence 6789999999999 8999 9999999999999999998999999999999999999999 68999999
Q ss_pred ecCCHHHHHHHHHHcCCCccc-ceeEEEcC-CchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEec-cCCCCCCH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKL-NHWQFSDT-NGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITVN-NLNVGRNP 154 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~-~~~~~~D~-~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~~-~~~~~~~~ 154 (181)
|.|+++.+++|++++ ++ +|++++|+ +.++++.||+. .. .|.+.|++||||++|+|++.+.+ ......++
T Consensus 82 s~d~~~~~~~~~~~~----~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~ 157 (165)
T 1q98_A 82 SADLPFAQARFCGAE----GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNY 157 (165)
T ss_dssp ESSCHHHHTTCTTTT----TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCH
T ss_pred eCCCHHHHHHHHHHc----CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCH
Confidence 999998888888876 88 79999998 89999999997 22 34557999999999999999973 34456788
Q ss_pred HHHHHHH
Q psy2878 155 IETLRIL 161 (181)
Q Consensus 155 ~~ll~~l 161 (181)
++++++|
T Consensus 158 ~~~l~~l 164 (165)
T 1q98_A 158 EAALAVL 164 (165)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8888765
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=206.89 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=133.4
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCe-EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKW-KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~-~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
++++|+++|+|+++ |.+| ++++|++++||+ +||+|| ++|||+|+.+++.|++++++|++++++||
T Consensus 31 ~l~~G~~aP~f~l~---------~~~G----~~v~l~~~~gk~~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv 96 (218)
T 3u5r_E 31 SITLGTRAADFVLP---------DAGG----NLFTLAEFKDSPALLVAFI-SNRCPFVVLIREALAKFAGDYAGQGLAVV 96 (218)
T ss_dssp CCCTTCBCCCCCEE---------CTTC----CEECGGGGTTCSEEEEEEC-CSSCHHHHTTHHHHHHHHHHHTTTTEEEE
T ss_pred cCCCCCcCCCcEeE---------CCCC----CEEeHHHhCCCCeEEEEEE-CCCCccHHHHHHHHHHHHHHHHhCCcEEE
Confidence 37899999999999 8999 999999999996 888887 78999999999999999999999999999
Q ss_pred EEec--------CCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCC--
Q psy2878 80 GGSS--------DNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLN-- 149 (181)
Q Consensus 80 ~Is~--------d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~-- 149 (181)
+|+. |+++.+++|++++ +++|+++.|.+.++++.|++. ..|++||||++|+|+++......
T Consensus 97 ~Vs~d~~~~~~~d~~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~~v~-----~~P~~~liD~~G~i~~~g~~d~~~~ 167 (218)
T 3u5r_E 97 AINSNDAQAFPEETLERVGAEVKAY----GYGFPYLKDASQSVAKAYGAA-----CTPDFFLYDRERRLVYHGQFDDARP 167 (218)
T ss_dssp EEECSCTTTCGGGSHHHHHHHHHHH----TCCSCEEECTTCHHHHHHTCC-----EESEEEEECTTCBEEEEECSSSCCT
T ss_pred EEECCcccccccCCHHHHHHHHHHh----CCCccEEECCccHHHHHcCCC-----CCCeEEEECCCCcEEEecccccccc
Confidence 9999 6788999999998 899999999999999999997 67899999999999988642211
Q ss_pred ---CCCCHHHHHHHHHhhccC----------CccccCCCCCCC
Q psy2878 150 ---VGRNPIETLRILDAIQTG----------KLCACNRTLNGK 179 (181)
Q Consensus 150 ---~~~~~~~ll~~l~~l~~~----------~~~~~~~~~~~~ 179 (181)
.....+++.++|+++..+ .+|+++|++|++
T Consensus 168 ~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~~~ 210 (218)
T 3u5r_E 168 GNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAGNE 210 (218)
T ss_dssp TSCCCCCCHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC--
T ss_pred ccccccCHHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCCCC
Confidence 123456777777766532 479999998865
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=203.58 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=127.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCCh-----hHHHHHHHHHHHHHhcC
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCP-----TEISEYNKLVKDFNERN 75 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~-----~~~~~l~~l~~~~~~~~ 75 (181)
++.+|+++|+|+++ |.+| ++++|++++||++||+||++.|||+|+ .+++.|+++ | .|
T Consensus 21 ~l~vG~~APdFtL~---------d~~G----~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g 82 (224)
T 3keb_A 21 FPRKGDYLPSFMLV---------DDQK----HDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH 82 (224)
T ss_dssp CCCTTCBCCCCEEE---------ETTS----CEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT
T ss_pred cCCCCCCCCCeEEE---------CCCC----CEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC
Confidence 47899999999999 8899 999999999999999999888899999 999998887 4 68
Q ss_pred cEEEEEecCCHHHHHHHHHHcCCCccc-ceeEEEcC-CchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEeccCC
Q psy2878 76 AILLGGSSDNEFVKLAWRRENSNLYKL-NHWQFSDT-NGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 76 ~~vi~Is~d~~~~~~~~~~~~~~~~~~-~~~~~~D~-~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
+.||+||.|+++.+++|++++ ++ +|++++|+ ++++++.||+. .. .|++.|++||||++|+|++++.....
T Consensus 83 v~VvgIS~Ds~~~~~~f~~~~----gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~ 158 (224)
T 3keb_A 83 LKLIVITVDSPSSLARARHEH----GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANT 158 (224)
T ss_dssp SEEEEEESSCHHHHHHHHHHH----CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBT
T ss_pred CEEEEEECCCHHHHHHHHHHc----CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCC
Confidence 999999999999999999998 88 69999998 69999999998 32 46678999999999999999974433
Q ss_pred -CCCCHHHHHHHHHhhc
Q psy2878 150 -VGRNPIETLRILDAIQ 165 (181)
Q Consensus 150 -~~~~~~~ll~~l~~l~ 165 (181)
...+.++++++|++++
T Consensus 159 ~~~pd~~evl~~L~~l~ 175 (224)
T 3keb_A 159 RDFFDFDAIEKLLQEGE 175 (224)
T ss_dssp TCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 3568999999999886
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.7e-32 Score=197.05 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=128.7
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+++|+|++. |.+| +++++++++||++||+||+++|||+|+.+++.|++++++| .++++|+
T Consensus 20 ~l~~g~~~P~f~l~---------~~~G----~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~ 84 (171)
T 2yzh_A 20 ELKVGDRAPEAVVV---------TKDL----QEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTV 84 (171)
T ss_dssp CCCTTSBCCCEEEE---------ETTS----CEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEE
T ss_pred cCCCCCcCCceEEE---------CCCC----CEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEE
Confidence 36789999999999 8999 9999999999999999998999999999999999999999 6899999
Q ss_pred EecCCHHHHHHHHHHcCCCccc-ceeEEEc-CCchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEecc-CCCCCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKL-NHWQFSD-TNGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITVNN-LNVGRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~~~-~~~~~~ 153 (181)
||.|+++.+++|++++ ++ +|++++| ++.++ +.||+. .. .|++.|++||||++|+|++++.+. .....+
T Consensus 85 Is~d~~~~~~~~~~~~----~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~ 159 (171)
T 2yzh_A 85 VSMDLPFAQKRFCESF----NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPN 159 (171)
T ss_dssp EESSCHHHHHHHHHHT----TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC
T ss_pred EeCCCHHHHHHHHHHc----CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCC
Confidence 9999999999999987 88 8999999 88999 999997 22 355679999999999999999642 234567
Q ss_pred HHHHHHHHHhh
Q psy2878 154 PIETLRILDAI 164 (181)
Q Consensus 154 ~~~ll~~l~~l 164 (181)
.+++++.|+++
T Consensus 160 ~~~ll~~l~~l 170 (171)
T 2yzh_A 160 YDEVVNKVKEL 170 (171)
T ss_dssp CHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 89999999875
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=198.51 Aligned_cols=143 Identities=15% Similarity=0.245 Sum_probs=122.7
Q ss_pred CCccCccCCCcEEecccCCCCCCCC--CcccceeeeecCC-CCCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHHHhcCc
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESS-FPGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDFNERNA 76 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~~~~~~ 76 (181)
++++|+++|+|+++ +. +| +++++|++ ++||++||+||+++|||+|+. |++.|++++++|+++|+
T Consensus 25 ~l~vG~~aPdf~l~---------~~~~~G---~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv 92 (184)
T 3uma_A 25 TIAVGDKLPNATFK---------EKTADG---PVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGV 92 (184)
T ss_dssp CCCTTCBCCCCEEE---------EEETTE---EEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTC
T ss_pred cCCCCCCCCCcEee---------cccCCC---ceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCC
Confidence 37899999999999 54 43 26899999 899999999999999999999 79999999999999999
Q ss_pred E-EEEEecCCHHHHHHHHHHcCCCcccc--eeEEEcCCchHHHHhCCC-CC--CCc---ceeeEEEEcCCCcEEEEEecc
Q psy2878 77 I-LLGGSSDNEFVKLAWRRENSNLYKLN--HWQFSDTNGSLIDQLGIR-HE--TGV---ALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 77 ~-vi~Is~d~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~gv~-~~--~g~---~~p~~~liD~~g~i~~~~~~~ 147 (181)
+ |++||.|+++.+++|++++ +++ |++++|+++++++.||+. .. .|+ +.|++|||| +|+|++.++++
T Consensus 93 ~~vv~Is~d~~~~~~~f~~~~----~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~ 167 (184)
T 3uma_A 93 DDIAVVAVNDLHVMGAWATHS----GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEE 167 (184)
T ss_dssp CEEEEEESSCHHHHHHHHHHH----TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECS
T ss_pred CEEEEEECCCHHHHHHHHHHh----CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeC
Confidence 9 9999999999999999998 888 999999999999999997 21 232 468899997 99999999865
Q ss_pred CCCC---CCHHHHHHH
Q psy2878 148 LNVG---RNPIETLRI 160 (181)
Q Consensus 148 ~~~~---~~~~~ll~~ 160 (181)
.+.. ..++++++.
T Consensus 168 ~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 168 SPGQATASGAAAMLEL 183 (184)
T ss_dssp STTCCSTTSHHHHHHH
T ss_pred CCCCCcCCCHHHHHhh
Confidence 4332 456666654
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=194.24 Aligned_cols=144 Identities=17% Similarity=0.302 Sum_probs=123.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHHHhcCc-E
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDFNERNA-I 77 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~~~~~~-~ 77 (181)
++++|+++|+|+++. |.+| ++++|+++ +||++||+||+++|||+|+. +++.|++++++|+++|+ +
T Consensus 2 ~l~~G~~aP~f~l~~--------~~~G----~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~ 69 (167)
T 2wfc_A 2 PIKEGDKLPAVTVFG--------ATPN----DKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDI 69 (167)
T ss_dssp CCCTTCBCCCCEEES--------SSTT----CEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCE
T ss_pred CCCCCCcCCCcEeec--------CCCC----cEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
Confidence 378999999999982 5778 99999998 99999999999999999999 99999999999999999 9
Q ss_pred EEEEecCCHHHHHHHHHHcCCCcccc--eeEEEcCCchHHHHhCCC-CC---CC--cceeeEEEEcCCCcEEEEEeccCC
Q psy2878 78 LLGGSSDNEFVKLAWRRENSNLYKLN--HWQFSDTNGSLIDQLGIR-HE---TG--VALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 78 vi~Is~d~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~gv~-~~---~g--~~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
||+||.|+++.+++|++++ +++ |++++|+++++++.||+. .. .| .+.|++||| ++|+|+++++++.+
T Consensus 70 vv~Is~d~~~~~~~~~~~~----~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~ 144 (167)
T 2wfc_A 70 IACMAVNDSFVMDAWGKAH----GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDG 144 (167)
T ss_dssp EEEEESSCHHHHHHHHHHT----TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTTS
T ss_pred EEEEeCCCHHHHHHHHHhc----CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCCC
Confidence 9999999999999999998 787 999999999999999987 21 01 135899999 99999999976544
Q ss_pred CCCC---HHHHHHHH
Q psy2878 150 VGRN---PIETLRIL 161 (181)
Q Consensus 150 ~~~~---~~~ll~~l 161 (181)
...+ .+.+++.+
T Consensus 145 ~~~~~~~~~~~~~~~ 159 (167)
T 2wfc_A 145 KGLTCSLAPNILSQL 159 (167)
T ss_dssp SSSSTTSHHHHHHHH
T ss_pred CcceeccHHHHHHHh
Confidence 4333 45555444
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-31 Score=191.46 Aligned_cols=144 Identities=17% Similarity=0.315 Sum_probs=122.0
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCC-CCCCeEEEEEeeCCCCCCCh-hHHHHHHHHHHHHHhcCcE-E
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESS-FPGKWKIFYFYPKDFTFVCP-TEISEYNKLVKDFNERNAI-L 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~-~~~~~l~~l~~~~~~~~~~-v 78 (181)
+++|+.+|+|+++.. |.+| .+++++|++ ++||++||+||+++|||+|+ .+++.|++++++|+++|++ |
T Consensus 4 ~~~G~~aP~f~l~~~-------~~~G--~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~v 74 (162)
T 1tp9_A 4 IAVGDVLPDGKLAYF-------DEQD--QLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEI 74 (162)
T ss_dssp CCTTCBCCCCEEEEE-------CTTS--CEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCCCeEEEee-------cCCC--CceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 679999999998521 3444 225899999 89999999999999999999 9999999999999999999 9
Q ss_pred EEEecCCHHHHHHHHHHcCCCccc--ceeEEEcCCchHHHHhCCC-C--CCC---cceeeEEEEcCCCcEEEEEeccCCC
Q psy2878 79 LGGSSDNEFVKLAWRRENSNLYKL--NHWQFSDTNGSLIDQLGIR-H--ETG---VALRATFIFDPQNIIQHITVNNLNV 150 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~-~--~~g---~~~p~~~liD~~g~i~~~~~~~~~~ 150 (181)
++||.|+++.+++|++++ ++ +|++++|+++++++.||+. . ..| .+.|++|||| +|+|++++.+. +.
T Consensus 75 v~Is~d~~~~~~~~~~~~----~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~ 148 (162)
T 1tp9_A 75 LCISVNDPFVMKAWAKSY----PENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GG 148 (162)
T ss_dssp EEEESSCHHHHHHHHHTC----TTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SS
T ss_pred EEEECCCHHHHHHHHHhc----CCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CC
Confidence 999999999999999987 77 8999999999999999997 2 124 2478999999 99999999755 43
Q ss_pred C---CCHHHHHHH
Q psy2878 151 G---RNPIETLRI 160 (181)
Q Consensus 151 ~---~~~~~ll~~ 160 (181)
. .++++++++
T Consensus 149 ~~~~~~~~~vl~~ 161 (162)
T 1tp9_A 149 EFTVSSAEDILKD 161 (162)
T ss_dssp CCSSCSHHHHHTT
T ss_pred CCccCCHHHHHhh
Confidence 2 257777654
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=192.92 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=130.8
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+.+|+|++. |.+| +++++++++||++||+|| ++||+.|..+++.|+++++++.++ +.+++
T Consensus 6 ~~~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~ 70 (188)
T 2cvb_A 6 ELPLESPLIDAELP---------DPRG----GRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRGK-VAFVG 70 (188)
T ss_dssp CCCTTCBCCCCEEE---------CTTS----CEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTTT-EEEEE
T ss_pred cCCCCCCCCCceee---------cCCC----CEEeHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhhcC-eEEEE
Confidence 46799999999999 8999 999999999999999999 889999999999999999999987 99999
Q ss_pred Eec--------CCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccC----
Q psy2878 81 GSS--------DNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNL---- 148 (181)
Q Consensus 81 Is~--------d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~---- 148 (181)
|+. ++.+.+++|++++ +++|+++.|.+.++++.|++. ..|++||||++|+|+++.....
T Consensus 71 v~~d~~~~~~~d~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~g~~~~~~~~ 141 (188)
T 2cvb_A 71 INANDYEKYPEDAPEKMAAFAEEH----GIFFPYLLDETQEVAKAYRAL-----RTPEVFLFDERRLLRYHGRVNDNPKD 141 (188)
T ss_dssp EECCCTTTCGGGSHHHHHHHHHHH----TCCSCEEECSSSHHHHHTTCC-----EESEEEEECTTCBEEEEECSSSCTTC
T ss_pred EEcCccccccccCHHHHHHHHHHh----CCCceEEECCcchHHHHcCCC-----CCCeEEEECCCCcEEEEEecCCcccc
Confidence 998 5678899999988 899999999999999999987 6789999999999999842110
Q ss_pred CCCCCHHHHHHHHHhhcc----------CCccccCCCCCCC
Q psy2878 149 NVGRNPIETLRILDAIQT----------GKLCACNRTLNGK 179 (181)
Q Consensus 149 ~~~~~~~~ll~~l~~l~~----------~~~~~~~~~~~~~ 179 (181)
......+++.+.|+++.. +.+|+++|.+|+.
T Consensus 142 ~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~~ 182 (188)
T 2cvb_A 142 PSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGNE 182 (188)
T ss_dssp GGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTCC
T ss_pred ccccCHHHHHHHHHHHHcCCCCCcccCCCCceEEEecCCCC
Confidence 011234556666655532 2479999999874
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=200.80 Aligned_cols=147 Identities=21% Similarity=0.375 Sum_probs=129.6
Q ss_pred CCccCccCCCcEEecccCCCCCCCC-Cccccee--eeecCC-CCCCeEEEEEeeCCCCCCCh-hHHHHHHHHHHHHHhcC
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEE-NNVSAFK--VITESS-FPGKWKIFYFYPKDFTFVCP-TEISEYNKLVKDFNERN 75 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~-~G~~~~~--~~~l~~-~~gk~~ll~F~~~~~cp~C~-~~~~~l~~l~~~~~~~~ 75 (181)
++.+|+++|+|+++ +. +| + +++|++ ++||++||+||+++|||+|+ .+++.|++++++|+++|
T Consensus 2 ~~~~G~~aP~f~l~---------~~~~g----~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~ 68 (241)
T 1nm3_A 2 SSMEGKKVPQVTFR---------TRQGD----KWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG 68 (241)
T ss_dssp -CCTTSBCCCCEEE---------EEETT----EEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT
T ss_pred CccCCCCCCCeEEE---------cccCC----CceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 37899999999999 64 67 7 999999 89999999999999999999 99999999999999999
Q ss_pred c-EEEEEecCCHHHHHHHHHHcCCCcccc-eeEEEcCCchHHHHhCCC-CC--CCc---ceeeEEEEcCCCcEEEEEecc
Q psy2878 76 A-ILLGGSSDNEFVKLAWRRENSNLYKLN-HWQFSDTNGSLIDQLGIR-HE--TGV---ALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 76 ~-~vi~Is~d~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~gv~-~~--~g~---~~p~~~liD~~g~i~~~~~~~ 147 (181)
+ +|++||.|+++.+++|++++ +++ |++++|+++++++.||+. .. .|+ +.|++||| ++|+|++.+.+.
T Consensus 69 ~~~vv~is~d~~~~~~~~~~~~----~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~ 143 (241)
T 1nm3_A 69 VDDILVVSVNDTFVMNAWKEDE----KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEP 143 (241)
T ss_dssp CCEEEEEESSCHHHHHHHHHHT----TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECC
T ss_pred CCEEEEEEcCCHHHHHHHHHhc----CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEec
Confidence 9 99999999999999999997 776 999999999999999997 22 243 46899999 999999999755
Q ss_pred CCCC-----CCHHHHHHHHHhhc
Q psy2878 148 LNVG-----RNPIETLRILDAIQ 165 (181)
Q Consensus 148 ~~~~-----~~~~~ll~~l~~l~ 165 (181)
.... .+.+++++.|+..+
T Consensus 144 ~~~~~~~~~~~~~~il~~l~~~~ 166 (241)
T 1nm3_A 144 NEPGDPFKVSDADTMLKYLAPQH 166 (241)
T ss_dssp SCSSCCCSSSSHHHHHHHHCTTS
T ss_pred cCCCccceecCHHHHHHHhhhhc
Confidence 4443 68999999998654
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=191.31 Aligned_cols=155 Identities=11% Similarity=0.062 Sum_probs=131.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCe-EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKW-KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~-~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
+.+|+.+|+|++.. |.+| +++++++++||+ +||+|| ++||++|+.+++.|++++++|+++++.+++
T Consensus 18 ~~~g~~~p~f~l~~--------~~~G----~~~~l~~~~gk~~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~ 84 (196)
T 2ywi_A 18 FPLGKQAPPFALTN--------VIDG----NVVRLEDVKSDAATVIMFI-CNHCPFVKHVQHELVRLANDYMPKGVSFVA 84 (196)
T ss_dssp CCTTCBCCCCEEEE--------TTTC----CEEEHHHHCCSSEEEEEEC-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred CCcCCcCCceeeee--------cCCC----CEEeHHHhCCCCeEEEEEe-CCCCccHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 67899999999972 4788 999999999985 888887 889999999999999999999999999999
Q ss_pred Eec--------CCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccC----
Q psy2878 81 GSS--------DNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNL---- 148 (181)
Q Consensus 81 Is~--------d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~---- 148 (181)
|+. |+.+.+++|++++ +++|+++.|.+.++++.|++. ..|++||||++|+|++++....
T Consensus 85 v~~d~~~~~~~d~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~~~~~~~ 155 (196)
T 2ywi_A 85 INSNDAEQYPEDSPENMKKVAEEL----GYPFPYLYDETQEVAKAYDAA-----CTPDFYIFDRDLKCVYRGQLDDSRPN 155 (196)
T ss_dssp EECSCTTTCGGGSHHHHHHHHHHH----TCCSCEEECSSCHHHHHHTCC-----EESEEEEEETTCBEEEEECSSSCCTT
T ss_pred EECCccccccccCHHHHHHHHHHc----CCCceEEECCchHHHHHhCCC-----CCCeEEEEcCCCeEEEccccCccccc
Confidence 998 5688899999998 899999999999999999987 6789999999999999864221
Q ss_pred -CCCCCHHHHHHHHHhhcc----------CCccccCCCCCC
Q psy2878 149 -NVGRNPIETLRILDAIQT----------GKLCACNRTLNG 178 (181)
Q Consensus 149 -~~~~~~~~ll~~l~~l~~----------~~~~~~~~~~~~ 178 (181)
....+.+++.+.|+++.. +.+|+++|.+|+
T Consensus 156 ~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~~ 196 (196)
T 2ywi_A 156 NGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKPSA 196 (196)
T ss_dssp TCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCCC
T ss_pred ccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccCC
Confidence 112255677777766542 248999999985
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=190.19 Aligned_cols=152 Identities=16% Similarity=0.291 Sum_probs=124.4
Q ss_pred CCccCccCCCcEEecccCCCCCCCCC-cccceeeeecCCC-CCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHHHhcCc-
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEEN-NVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDFNERNA- 76 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~-G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~~~~~~- 76 (181)
|+++|+++|++++....+. +.. ..+..++++|+++ +||++||+||++.|||+|.. |++.|++.+++|+++|+
T Consensus 9 ~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d 84 (176)
T 4f82_A 9 MIQVGDALPDAQLFEFIDD----AREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGID 84 (176)
T ss_dssp CCCTTCBCCCCEEEEEECS----CCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCC
T ss_pred hhhcCCcCCceEEEEeccc----ccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 7899999999988754321 100 0013478999997 99999999999999999999 99999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHHcCCCcccc--eeEEEcCCchHHHHhCCC-CC--CCc---ceeeEEEEcCCCcEEEEEeccC
Q psy2878 77 ILLGGSSDNEFVKLAWRRENSNLYKLN--HWQFSDTNGSLIDQLGIR-HE--TGV---ALRATFIFDPQNIIQHITVNNL 148 (181)
Q Consensus 77 ~vi~Is~d~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~gv~-~~--~g~---~~p~~~liD~~g~i~~~~~~~~ 148 (181)
+|++||.|+++.+++|+++. +++ |++++|+++++++.||+. +. .|+ +.|++||| ++|+|++.+.++.
T Consensus 85 ~VigIS~D~~~~~~~f~~~~----~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~~ 159 (176)
T 4f82_A 85 EIWCVSVNDAFVMGAWGRDL----HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEAP 159 (176)
T ss_dssp EEEEEESSCHHHHHHHHHHT----TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECCT
T ss_pred EEEEEeCCCHHHHHHHHHHh----CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcCC
Confidence 99999999999999999997 777 999999999999999998 32 342 46899999 9999999998542
Q ss_pred C--CCCCHHHHHHHH
Q psy2878 149 N--VGRNPIETLRIL 161 (181)
Q Consensus 149 ~--~~~~~~~ll~~l 161 (181)
. ...+++++++.|
T Consensus 160 ~~~~~~~a~~vL~~L 174 (176)
T 4f82_A 160 GKFEVSDAASVLATL 174 (176)
T ss_dssp TCCSSSSHHHHHHTC
T ss_pred CCcchhhHHHHHHHh
Confidence 2 123556666554
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=187.38 Aligned_cols=143 Identities=19% Similarity=0.279 Sum_probs=121.1
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+.+|+|++. |.+| +++++++++||++||+||.+.||++|+.+++.|++++++ .++++|+
T Consensus 17 ~l~~G~~~P~f~l~---------~~~G----~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~ 80 (175)
T 1xvq_A 17 LPAVGSPAPAFTLT---------GGDL----GVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLC 80 (175)
T ss_dssp CCCTTSBCCCCEEE---------CTTS----CEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEE
T ss_pred CCCcCCcCCCeEEE---------CCCC----CEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEE
Confidence 36789999999999 8999 999999999999999999665699999999999999988 6899999
Q ss_pred EecCCHHHHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEec-cCCCCCCH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITVN-NLNVGRNP 154 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~~-~~~~~~~~ 154 (181)
||.|+++.+++|++++ ++ +|+++.|++.++++.||+. .. .|.+.|++||||++|+|++++.+ ......++
T Consensus 81 Is~D~~~~~~~~~~~~----~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~ 156 (175)
T 1xvq_A 81 VSKDLPFAQKRFCGAE----GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNY 156 (175)
T ss_dssp EESSCHHHHTTCC----------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCH
T ss_pred EECCCHHHHHHHHHHc----CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCH
Confidence 9999999888888876 88 8999999999999999997 21 45567999999999999999963 34456688
Q ss_pred HHHHHHHHh
Q psy2878 155 IETLRILDA 163 (181)
Q Consensus 155 ~~ll~~l~~ 163 (181)
+++++++++
T Consensus 157 ~~~l~~l~~ 165 (175)
T 1xvq_A 157 EAALAALGA 165 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888874
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=190.22 Aligned_cols=144 Identities=19% Similarity=0.359 Sum_probs=122.4
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCC--eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGK--WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk--~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
++.+|+.+|+|+++ |.+| ++++|++++|| ++||+||+++|||+|+.+++.|++++++|++++ +|
T Consensus 6 ~~~~G~~~P~f~l~---------~~~G----~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~v 71 (159)
T 2a4v_A 6 ELEIGDPIPDLSLL---------NEDN----DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AV 71 (159)
T ss_dssp CCCTTCBCCSCEEE---------CTTS----CEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EE
T ss_pred cCCCCCCCCCeEEE---------CCCC----CEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cE
Confidence 36799999999999 8999 99999999987 899999989999999999999999999999989 99
Q ss_pred EEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC-CCcceeeEEEEcCCCcEEEEEeccCCCC----C
Q psy2878 79 LGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE-TGVALRATFIFDPQNIIQHITVNNLNVG----R 152 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~-~g~~~p~~~liD~~g~i~~~~~~~~~~~----~ 152 (181)
|+||.|+++.+++|++++ +++|++++|+++++++.||+. .. .| ..|++||| ++|+|++++.+ .... .
T Consensus 72 v~is~d~~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~gv~~~p~~g-~~~~~~li-~~G~i~~~~~g-~~~~~~~~~ 144 (159)
T 2a4v_A 72 FGLSADSVTSQKKFQSKQ----NLPYHLLSDPKREFIGLLGAKKTPLSG-SIRSHFIF-VDGKLKFKRVK-ISPEVSVND 144 (159)
T ss_dssp EEEESCCHHHHHHHHHHH----TCSSEEEECTTCHHHHHHTCBSSSSSC-BCCEEEEE-ETTEEEEEEES-CCHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHh----CCCceEEECCccHHHHHhCCcccccCC-ccceEEEE-cCCEEEEEEcc-CCccccHHH
Confidence 999999999999999998 899999999999999999997 21 23 35689999 99999999953 2222 2
Q ss_pred CHHHHHHHHHhhc
Q psy2878 153 NPIETLRILDAIQ 165 (181)
Q Consensus 153 ~~~~ll~~l~~l~ 165 (181)
.++++.+.+++++
T Consensus 145 ~~~~l~~~l~~l~ 157 (159)
T 2a4v_A 145 AKKEVLEVAEKFK 157 (159)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 3444555555544
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=189.84 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=126.6
Q ss_pred CccCccCCCcEEecccC-CC-CCCCCCcccceeeeecCC-CCCCeEEEEEeeCCCCCCCh-hHHHHHHHHHHHH-HhcCc
Q psy2878 2 KTIGQSLSSYRVIGVKP-GF-NLPEENNVSAFKVITESS-FPGKWKIFYFYPKDFTFVCP-TEISEYNKLVKDF-NERNA 76 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~-~~-~~~d~~G~~~~~~~~l~~-~~gk~~ll~F~~~~~cp~C~-~~~~~l~~l~~~~-~~~~~ 76 (181)
+++|+.+|+|+++.... .+ .+...+|++++++++|++ ++||++||+||++.|||+|. .|++.|++.+++| ++.|+
T Consensus 1 l~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~ 80 (182)
T 1xiy_A 1 MKENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF 80 (182)
T ss_dssp CCTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC
T ss_pred CCCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999993100 00 000014433446899998 69999999999999999999 9999999999999 99999
Q ss_pred E-EEEEecCCHHHHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCC-CC--CCc---ceeeEEEEcCCCcEEEEEeccC
Q psy2878 77 I-LLGGSSDNEFVKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIR-HE--TGV---ALRATFIFDPQNIIQHITVNNL 148 (181)
Q Consensus 77 ~-vi~Is~d~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~-~~--~g~---~~p~~~liD~~g~i~~~~~~~~ 148 (181)
+ |++||.|++..+++|.+++ ++ +|++++|+++++++.||+. .. .|+ +.|++|||| +|+|++.++...
T Consensus 81 ~~V~gvS~D~~~~~~~~~~~~----~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~~~ 155 (182)
T 1xiy_A 81 DDIYCITNNDIYVLKSWFKSM----DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKD 155 (182)
T ss_dssp SEEEEEESSCHHHHHHHHHHT----TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSS
T ss_pred cEEEEEeCCCHHHHHHHHHHc----CCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEeCC
Confidence 5 9999999999999999987 66 6999999999999999997 32 242 578999999 999999997543
Q ss_pred CC---------CCCHHHHHHHHHhh
Q psy2878 149 NV---------GRNPIETLRILDAI 164 (181)
Q Consensus 149 ~~---------~~~~~~ll~~l~~l 164 (181)
.. ..++++++++|++.
T Consensus 156 ~~~~~~~~~~~~~~~~~vL~~L~~~ 180 (182)
T 1xiy_A 156 KQHNIQTDPYDISTVNNVKEFLKNN 180 (182)
T ss_dssp CCTTCSSCCCSTTSHHHHHHHHHCC
T ss_pred cccccccCcccCCCHHHHHHHHHhc
Confidence 32 37899999998753
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=187.79 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=126.9
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+.+|+|++. |.+| +++++++++||++||+||.+.||++|+.+++.|++++++| .++++++|
T Consensus 18 ~~~G~~~p~f~l~---------~~~G----~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~i 82 (167)
T 2jsy_A 18 VKVGDQAPDFTVL---------TNSL----EEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTI 82 (167)
T ss_dssp CCTTSCCCCCEEE---------BTTC----CEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEE
T ss_pred cCCCCcCCceEEE---------CCCC----CEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEE
Confidence 6789999999999 8999 9999999999999999995545999999999999999999 68999999
Q ss_pred ecCCHHHHHHHHHHcCCCccc-ceeEEEc-CCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEecc-CCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKL-NHWQFSD-TNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNN-LNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~-~~~~~~D-~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~-~~~~~~~~~l 157 (181)
|.|+++.+++|++++ ++ +|+++.| ++.++++.||+. ...|++.|++||||++|+|++++.+. .....+.+++
T Consensus 83 s~d~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l 158 (167)
T 2jsy_A 83 SADLPFAQARWCGAN----GIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKP 158 (167)
T ss_dssp ECSSGGGTSCCGGGS----SCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHH
T ss_pred ECCCHHHHHHHHHhc----CCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHH
Confidence 999988888888876 88 8999999 899999999998 33455579999999999999999743 2334577999
Q ss_pred HHHHHhhc
Q psy2878 158 LRILDAIQ 165 (181)
Q Consensus 158 l~~l~~l~ 165 (181)
++.|+++.
T Consensus 159 ~~~l~~ll 166 (167)
T 2jsy_A 159 IEAAKALV 166 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998764
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=205.70 Aligned_cols=138 Identities=22% Similarity=0.349 Sum_probs=124.2
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.++|+|+|+ |.+| ++++|+|++||++||+||++.|||.|+.|++.|++. ..++++|+|||.|+
T Consensus 2 ak~p~F~l~---------~~~G----~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~~----~~~~~~v~gis~D~ 64 (322)
T 4eo3_A 2 ARVKHFELL---------TDEG----KTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSRE----NFEKAQVVGISRDS 64 (322)
T ss_dssp CBCCCCEEE---------ETTS----CEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHHS----CCTTEEEEEEESCC
T ss_pred CCCCCcEEE---------CCCc----CEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHH----hhCCCEEEEEeCCC
Confidence 478999999 9999 999999999999999999999999999999888642 23589999999999
Q ss_pred HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 86 EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++.+++|++++ +++||+++|+++++++.||++. .+...|++||||++|+|++++. ...+..+++++++.|++++
T Consensus 65 ~~~~~~f~~~~----~l~fp~l~D~~~~v~~~ygv~~-~~~~~r~tfiId~~G~i~~~~~-~v~~~~h~~~~l~~~~~~~ 138 (322)
T 4eo3_A 65 VEALKRFKEKN----DLKVTLLSDPEGILHEFFNVLE-NGKTVRSTFLIDRWGFVRKEWR-RVKVEGHVQEVKEALDRLI 138 (322)
T ss_dssp HHHHHHHHHHH----TCCSEEEECTTCHHHHHTTCEE-TTEECCEEEEECTTSBEEEEEE-SCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh----CCceEEEEcCchHHHHhcCCCC-CCcCccEEEEECCCCEEEEEEe-CCCccccHHHHHHHHhhhc
Confidence 99999999998 9999999999999999999972 2446789999999999999984 6788899999999999987
Q ss_pred c
Q psy2878 166 T 166 (181)
Q Consensus 166 ~ 166 (181)
.
T Consensus 139 ~ 139 (322)
T 4eo3_A 139 E 139 (322)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-30 Score=187.35 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=120.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCC-cccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE-E
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEEN-NVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI-L 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~-G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~-v 78 (181)
+++|+++|+|+++ +.+ | ++++|+++ +||++||+||++.|||+|..|++.|++.+++|++.|++ |
T Consensus 14 ~~vGd~aPdf~l~---------~~g~~----~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~V 80 (171)
T 2xhf_A 14 IKVGDIIPDVLVY---------EDVPS----KSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTI 80 (171)
T ss_dssp CCTTCBCCCCEEE---------CSSTT----CEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEE
T ss_pred ccCcCCCCCeEEe---------cCCCC----cEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEE
Confidence 5799999999998 322 4 79999995 99999999999999999999999999999999999996 9
Q ss_pred EEEecCCHHHHHHHHHHcCCCccc--ceeEEEcCCchHHHHhCCC-CCC----C-cceeeEEEEcCCCcEEEEEeccCCC
Q psy2878 79 LGGSSDNEFVKLAWRRENSNLYKL--NHWQFSDTNGSLIDQLGIR-HET----G-VALRATFIFDPQNIIQHITVNNLNV 150 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~-~~~----g-~~~p~~~liD~~g~i~~~~~~~~~~ 150 (181)
++||.|++..+++|+++. ++ +|++++|+++++++.||+. ... + ...|++|||| +|+|++.++++.+.
T Consensus 81 igIS~D~~~~~~~w~~~~----~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~ 155 (171)
T 2xhf_A 81 ACIAVNDPFVMAAWGKTV----DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDIT 155 (171)
T ss_dssp EEEESSCHHHHHHHHHHH----CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSCS
T ss_pred EEEeCCCHHHHHHHHHhc----CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCCC
Confidence 999999999999999988 66 8999999999999999998 321 2 3678999999 99999999754332
Q ss_pred ---CCCHHHHHHHHH
Q psy2878 151 ---GRNPIETLRILD 162 (181)
Q Consensus 151 ---~~~~~~ll~~l~ 162 (181)
....++++++++
T Consensus 156 ~~~~s~a~~vL~~~~ 170 (171)
T 2xhf_A 156 GLACLLSIQRQKENK 170 (171)
T ss_dssp HHHHHHHHHHC----
T ss_pred cccCCCHHHHHHHhc
Confidence 224566766654
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=173.18 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=125.9
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|+++|+|++. + +| +++++++++||++||+|| ++||+.|..+++.|.++++++.+.++.+++|
T Consensus 3 l~~G~~~P~f~l~---------~-~g----~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v 67 (152)
T 3gl3_A 3 LDKGDKAPDFALP---------G-KT----GVVKLSDKTGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAKGFQVVAV 67 (152)
T ss_dssp CCTTSBCCCCEEE---------B-SS----SEEEGGGGTTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCCCcCCceEee---------C-CC----CeEeHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 7899999999999 8 89 999999999999999999 8899999999999999999999999999999
Q ss_pred ecC-CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 82 SSD-NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 82 s~d-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
+.| ..+..++|.+++ +++|+++.|.+.++++.|++. ..|++||||++|+|++++.+ ....+.+++.+.
T Consensus 68 ~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g--~~~~~~~~l~~~ 136 (152)
T 3gl3_A 68 NLDAKTGDAMKFLAQV----PAEFTVAFDPKGQTPRLYGVK-----GMPTSFLIDRNGKVLLQHVG--FRPADKEALEQQ 136 (152)
T ss_dssp ECCSSHHHHHHHHHHS----CCCSEEEECTTCHHHHHTTCC-----SSSEEEEECTTSBEEEEEES--CCTTTHHHHHHH
T ss_pred ECCCCHHHHHHHHHHc----CCCCceeECCcchhHHHcCCC-----CCCeEEEECCCCCEEEEEcc--CCCcCHHHHHHH
Confidence 988 567788888887 899999999999999999987 67899999999999999953 233567889999
Q ss_pred HHhhccCCc
Q psy2878 161 LDAIQTGKL 169 (181)
Q Consensus 161 l~~l~~~~~ 169 (181)
|+++..+..
T Consensus 137 i~~~~~~~~ 145 (152)
T 3gl3_A 137 ILAALGGNE 145 (152)
T ss_dssp HHHHTC---
T ss_pred HHHHHcccc
Confidence 988775543
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=175.86 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=124.7
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+.+|+++|+|++. |.+| +++++++++||++||+|| ++||+.|..+++.|.++++++.+.++.+++
T Consensus 1 m~~~G~~~p~~~l~---------~~~g----~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~ 66 (154)
T 3kcm_A 1 MSLEENPAPDFTLN---------TLNG----EVVKLSDLKGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKPFRMLC 66 (154)
T ss_dssp --CTTSBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCCCCCCCCCeEEE---------cCCC----CEEehhhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 78899999999999 8999 999999999999999999 899999999999999999999988999999
Q ss_pred EecCC--HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 81 GSSDN--EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 81 Is~d~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
|+.|. .+..++|++++ +++|+++.|.+..+++.|++. ..|++||||++|+|++++.+ ....+.+++.
T Consensus 67 v~~d~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g--~~~~~~~~l~ 135 (154)
T 3kcm_A 67 VSIDEGGKVAVEEFFRKT----GFTLPVLLDADKRVGKLYGTT-----GVPETFVIDRHGVILKKVVG--AMEWDHPEVI 135 (154)
T ss_dssp EECCTTHHHHHHHHHHHH----CCCCCEEECTTCHHHHHHTCC-----SBCEEEEECTTSBEEEEEES--CCCTTSHHHH
T ss_pred EEcCCcchHHHHHHHHHc----CCCeeEEecCchHHHHHhCCC-----CCCeEEEECCCCcEEEEEcC--CCccccHHHH
Confidence 99987 77888999988 899999999999999999987 67899999999999999853 2234567888
Q ss_pred HHHHhhccC
Q psy2878 159 RILDAIQTG 167 (181)
Q Consensus 159 ~~l~~l~~~ 167 (181)
+.|+++...
T Consensus 136 ~~l~~l~~~ 144 (154)
T 3kcm_A 136 AFLNNELSK 144 (154)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHHH
Confidence 888887654
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-29 Score=182.13 Aligned_cols=147 Identities=15% Similarity=0.238 Sum_probs=116.7
Q ss_pred cCccCCCcEEecccCCCCCCCCCcc-cceeeeecCCC-CCCeEEEEEeeCCCCCCChhH-HHHHHHHHHHHHhcCcE-EE
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNV-SAFKVITESSF-PGKWKIFYFYPKDFTFVCPTE-ISEYNKLVKDFNERNAI-LL 79 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~-~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~-~~~l~~l~~~~~~~~~~-vi 79 (181)
+|+++|+|++++... +.+|. +.+++++|+++ +||++||+||+++|||+|+.| ++.|++++++|+++|++ |+
T Consensus 9 ~g~~aP~f~l~~~~~-----~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv 83 (171)
T 2pwj_A 9 ILSAASNVSLQKART-----WDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVI 83 (171)
T ss_dssp -CCCSSSBCCCSCEE-----CCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEE
T ss_pred ccCcCCCeEEecccc-----cccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 456999999993210 00120 11168999996 998888888889999999999 99999999999999999 99
Q ss_pred EEecCCHHHHHHHHHHcCCCccc--ceeEEEcCCchHHHHhCCC-CCC----Cc-ceeeEEEEcCCCcEEEEEeccCCC-
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKL--NHWQFSDTNGSLIDQLGIR-HET----GV-ALRATFIFDPQNIIQHITVNNLNV- 150 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~-~~~----g~-~~p~~~liD~~g~i~~~~~~~~~~- 150 (181)
+||.|+++.+++|++++ ++ +|++++|+++++++.||+. ... |. ..|++|+|| +|+|++++.+..+.
T Consensus 84 ~Is~d~~~~~~~~~~~~----~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~ 158 (171)
T 2pwj_A 84 CVAINDPYTVNAWAEKI----QAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEESPSD 158 (171)
T ss_dssp EEESSCHHHHHHHHHHT----TCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTC
T ss_pred EEeCCCHHHHHHHHHHh----CCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecCCCC
Confidence 99999999999999987 64 7999999999999999997 221 22 357899999 99999999754443
Q ss_pred --CCCHHHHHHH
Q psy2878 151 --GRNPIETLRI 160 (181)
Q Consensus 151 --~~~~~~ll~~ 160 (181)
..++++++++
T Consensus 159 ~~~~~~~~il~~ 170 (171)
T 2pwj_A 159 VKVSGAETILGQ 170 (171)
T ss_dssp CSSSSHHHHHHH
T ss_pred CcccCHHHHHhc
Confidence 3466777665
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=172.79 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=119.0
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecC--CCCCCeEEEEEeeCCCCCC--ChhHHHHHHHHHHHH-HhcC
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITES--SFPGKWKIFYFYPKDFTFV--CPTEISEYNKLVKDF-NERN 75 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~--~~~gk~~ll~F~~~~~cp~--C~~~~~~l~~l~~~~-~~~~ 75 (181)
.+++|+++|+|+++ |.+| ++++++ +++||++||+|| ++||++ |+.+++.|.+++++| ++.+
T Consensus 4 ~l~~G~~~p~f~l~---------~~~g----~~~~l~~~~~~gk~vll~F~-a~~C~~v~C~~~~~~l~~l~~~~~~~~~ 69 (150)
T 3fw2_A 4 KSEIGKYAPFFSLP---------NAKG----EKITRSSDAFKQKSLLINFW-ASWNDSISQKQSNSELREIYKKYKKNKY 69 (150)
T ss_dssp TTSTTSBCCCCCEE---------BTTC----CEECTTSTTTTTSEEEEEEE-CTTCCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cccCCCcCCccEeE---------CCCC----CEEecchhhhCCCEEEEEEE-eCCCCchHHHHHHHHHHHHHHHhccCCC
Confidence 36899999999999 8999 999999 999999999999 789999 999999999999999 7788
Q ss_pred cEEEEEecCC-HHHHHHHHHHcCCCcccceeEEEcC---CchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCC
Q psy2878 76 AILLGGSSDN-EFVKLAWRRENSNLYKLNHWQFSDT---NGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVG 151 (181)
Q Consensus 76 ~~vi~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~ 151 (181)
+.+++|+.|. .+..++|++++ +++|+++.|. +.++++.||+. ..|++||||++|+|++++.
T Consensus 70 ~~~v~v~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~------ 134 (150)
T 3fw2_A 70 IGMLGISLDVDKQQWKDAIKRD----TLDWEQVCDFGGLNSEVAKQYSIY-----KIPANILLSSDGKILAKNL------ 134 (150)
T ss_dssp EEEEEEECCSCHHHHHHHHHHT----TCCSEEECCSCGGGCHHHHHTTCC-----SSSEEEEECTTSBEEEESC------
T ss_pred eEEEEEEcCCCHHHHHHHHHHh----CCCceEEEcCcccchHHHHHcCCC-----ccCeEEEECCCCEEEEccC------
Confidence 9999999986 47888899887 9999999998 67999999987 6789999999999999883
Q ss_pred CCHHHHHHHHHhh
Q psy2878 152 RNPIETLRILDAI 164 (181)
Q Consensus 152 ~~~~~ll~~l~~l 164 (181)
..+++.+.|+++
T Consensus 135 -~~~~l~~~l~~l 146 (150)
T 3fw2_A 135 -RGEELKKKIENI 146 (150)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHH
Confidence 445666666554
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=174.81 Aligned_cols=145 Identities=11% Similarity=0.136 Sum_probs=122.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCC-CChhHHHHHHHHHHHHHhcC--cEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF-VCPTEISEYNKLVKDFNERN--AIL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp-~C~~~~~~l~~l~~~~~~~~--~~v 78 (181)
+.+|+.+|+|++. |.+| +++++++++||++||+|| ++||+ +|+.+++.|.++++++++.+ ++|
T Consensus 7 l~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v 72 (174)
T 1xzo_A 7 DPLNYEVEPFTFQ---------NQDG----KNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRI 72 (174)
T ss_dssp SCCCEECCCCEEE---------CTTS----CEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CccccccCCcEEE---------cCCC----CEEehhhcCCCEEEEEEE-cCCCcchhHHHHHHHHHHHHHhhhcCCcEEE
Confidence 6789999999999 8999 999999999999999999 88999 99999999999999999886 999
Q ss_pred EEEecC----CHHHHHHHHHHcCCCcccce---eEEEcCCchHHHHhCC-----C--C----CCCcceeeEEEEcCCCcE
Q psy2878 79 LGGSSD----NEFVKLAWRRENSNLYKLNH---WQFSDTNGSLIDQLGI-----R--H----ETGVALRATFIFDPQNII 140 (181)
Q Consensus 79 i~Is~d----~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~gv-----~--~----~~g~~~p~~~liD~~g~i 140 (181)
|+||.| +++.+++|++++ +++| +++.|++.++++.|++ . . ....+.|++||||++|+|
T Consensus 73 v~is~d~~~d~~~~~~~~~~~~----~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i 148 (174)
T 1xzo_A 73 ISFSVDPENDKPKQLKKFAANY----PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKV 148 (174)
T ss_dssp EEEESCTTTCCHHHHHHHHTTS----CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHc----CCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeE
Confidence 999987 577888888877 7777 9999988888877753 1 0 012357899999999999
Q ss_pred EEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 141 QHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++++.+.. ..+.+++++.|+++..
T Consensus 149 ~~~~~g~~--~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 149 LKDYNGVE--NTPYDDIISDVKSAST 172 (174)
T ss_dssp EEEEESSS--SCCHHHHHHHHHHHTC
T ss_pred EEEEcCCC--CCCHHHHHHHHHHHHh
Confidence 99995322 2467889999988754
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=172.04 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=117.3
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHH---HHHHHHhcCcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNK---LVKDFNERNAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~---l~~~~~~~~~~vi 79 (181)
++|+++|+|++. |.+| +++++++++||++||+|| ++||++|+.+++.|.+ +++++++.++.++
T Consensus 2 ~~G~~~p~f~l~---------~~~g----~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v 67 (142)
T 3ewl_A 2 NAGMKAADFTYV---------TVHG----DNSRMSRLKAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVENGTLRVL 67 (142)
T ss_dssp CTTSBCCCCEEE---------CTTC----CEEEGGGCCCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEE
T ss_pred CCCCcCCCCEEE---------CCCC----CEEEhhhcCCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhccCCeEEE
Confidence 689999999999 8999 999999999999999999 8899999999999998 9999999999999
Q ss_pred EEecC-CHHHHHHHHHHcCCCcccceeEEEcCCchHHH--HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 80 GGSSD-NEFVKLAWRRENSNLYKLNHWQFSDTNGSLID--QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 80 ~Is~d-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+|+.| +.+..++|++++ +++|+++.|.++.+.. .|++. ..|++||||++|+|++.. ...++
T Consensus 68 ~v~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~-------~~~~~ 131 (142)
T 3ewl_A 68 AIYPDENREEWATKAVYM----PQGWIVGWNKAGDIRTRQLYDIR-----ATPTIYLLDGRKRVILKD-------TSMEQ 131 (142)
T ss_dssp EEECSSCHHHHHHHHTTS----CTTCEEEECTTCHHHHTTCSCCC-----SSSEEEEECTTCBEEECS-------CCHHH
T ss_pred EEEecCCHHHHHHHHHHc----CCCcceeeCCccchhhHHHcCCC-----CCCeEEEECCCCCEEecC-------CCHHH
Confidence 99998 567778888876 8999999999999987 89987 678999999999999743 35677
Q ss_pred HHHHHHhhc
Q psy2878 157 TLRILDAIQ 165 (181)
Q Consensus 157 ll~~l~~l~ 165 (181)
+.+.|++++
T Consensus 132 l~~~l~~~~ 140 (142)
T 3ewl_A 132 LIDYLATQA 140 (142)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHc
Confidence 887777654
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=170.44 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=118.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+.+|+|++. |.+| +++++++++||++||+|| ++||+.|+.+++.|+++++++.++++.+++|
T Consensus 3 l~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 68 (152)
T 2lrn_A 3 LATGSVAPAITGI---------DLKG----NSVSLNDFKGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDKGFTIYGV 68 (152)
T ss_dssp SCTTEECCCCEEE---------CSSS----CEEESGGGTTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred ccCCCcCCCceeE---------cCCC----CEEeHHHcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 7899999999999 8999 999999999999999998 8899999999999999999999889999999
Q ss_pred ecCC-HHHHHHHHHHcCCCcccceeEEEcC---CchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDN-EFVKLAWRRENSNLYKLNHWQFSDT---NGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~-~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
+.|. .+..++|.+++ +++|+++.|+ +..+++.||+. ..|++||||++|+|++++. ..+++
T Consensus 69 ~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~-------~~~~l 132 (152)
T 2lrn_A 69 STDRREEDWKKAIEED----KSYWNQVLLQKDDVKDVLESYCIV-----GFPHIILVDPEGKIVAKEL-------RGDDL 132 (152)
T ss_dssp ECCSCHHHHHHHHHHH----TCCSEEEEECHHHHHHHHHHTTCC-----SSCEEEEECTTSEEEEECC-------CTTHH
T ss_pred EccCCHHHHHHHHHHh----CCCCeEEecccchhHHHHHHhCCC-----cCCeEEEECCCCeEEEeeC-------CHHHH
Confidence 9884 67788888887 8999999998 78999999987 6789999999999999873 12456
Q ss_pred HHHHHhhc
Q psy2878 158 LRILDAIQ 165 (181)
Q Consensus 158 l~~l~~l~ 165 (181)
.+.|+++.
T Consensus 133 ~~~l~~l~ 140 (152)
T 2lrn_A 133 YNTVEKFV 140 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=169.92 Aligned_cols=131 Identities=11% Similarity=0.104 Sum_probs=114.0
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHH---HHHHHHhcCcEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNK---LVKDFNERNAIL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~---l~~~~~~~~~~v 78 (181)
..+|+++|+|++. |.+| ++++|++++||++||+|| ++||++|+.+++.|.+ +++++++.++.+
T Consensus 5 ~~~G~~ap~f~l~---------~~~g----~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~v 70 (142)
T 3eur_A 5 NRLGTKALNFTYT---------LDSG----VKGTLYQFPAEYTLLFIN-NPGCHACAEMIEGLKASPVINGFTAAKKLKV 70 (142)
T ss_dssp TCTTSBCCCCEEE---------ETTS----CEEETTTCCCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHHHHTTSEEE
T ss_pred hcCCCccCCcEEE---------cCCC----CEeeHHHcCCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHHhccCCeEE
Confidence 5689999999999 8999 999999999999999999 9999999999999999 999999999999
Q ss_pred EEEecCCH-HHHHHHHHHcCCCcccceeEEEcCCch--HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 79 LGGSSDNE-FVKLAWRRENSNLYKLNHWQFSDTNGS--LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 79 i~Is~d~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
++|+.|.. +..++|++++ +++|+.+.|.+.. +++.|++. ..|++||||++|+|+++.. ..+
T Consensus 71 i~i~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~-------~~~ 134 (142)
T 3eur_A 71 LSIYPDEELDEWKKHRNDF----AKEWTNGYDKELVIKNKNLYDLR-----AIPTLYLLDKNKTVLLKDA-------TLQ 134 (142)
T ss_dssp EEEECSSCHHHHHHHGGGS----CTTSEEEECTTCHHHHTTCSCCT-----TCSEEEEECTTCBEEEEEE-------CHH
T ss_pred EEEEcCCCHHHHHHHHHhc----ccccccccCccchhhhhhhcCCC-----cCCeEEEECCCCcEEecCC-------CHH
Confidence 99999864 5666777766 8899999998765 68888886 6789999999999999884 246
Q ss_pred HHHHHHH
Q psy2878 156 ETLRILD 162 (181)
Q Consensus 156 ~ll~~l~ 162 (181)
++.+.|+
T Consensus 135 ~l~~~l~ 141 (142)
T 3eur_A 135 KVEQYLA 141 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665554
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=172.26 Aligned_cols=136 Identities=12% Similarity=0.107 Sum_probs=119.7
Q ss_pred cCccCCCcEEecccCCCCCCCC--CcccceeeeecCCCCCCeEEEEEeeCCCCCCChhH-HHHHHHHHHHHHhcCcEEEE
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE-ISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~-~~~l~~l~~~~~~~~~~vi~ 80 (181)
.|+++|+|+++ |. +| +++++++++||++||+|| ++||++|+.+ ++.|++++++|++.++.+++
T Consensus 2 ~g~~aP~f~l~---------~~~~~g----~~~~l~~~~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~ 67 (158)
T 3eyt_A 2 NAMKAPELQIQ---------QWFNSA----TDLTLADLRGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDKVAVLG 67 (158)
T ss_dssp CCEECCCCCEE---------EEESCS----SCCCTGGGTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEE
T ss_pred CCCcCCCceeh---------hhhcCC----CccCHHHhCCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCCEEEEE
Confidence 68999999999 63 78 999999999999999999 7899999997 99999999999988999999
Q ss_pred Eec-------CCHHHHHHHHHHcCCCcccceeEEEcCCc-----hHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccC
Q psy2878 81 GSS-------DNEFVKLAWRRENSNLYKLNHWQFSDTNG-----SLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNL 148 (181)
Q Consensus 81 Is~-------d~~~~~~~~~~~~~~~~~~~~~~~~D~~~-----~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~ 148 (181)
|+. ++.+.+++|++++ +++|+++.|.+. ++++.||+. ..|++||||++|+|++++.+.
T Consensus 68 v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~- 137 (158)
T 3eyt_A 68 LHTVFEHHEAMTPISLKAFLHEY----RIKFPVGVDQPGDGAMPRTMAAYQMR-----GTPSLLLIDKAGDLRAHHFGD- 137 (158)
T ss_dssp EECCCSCGGGSCHHHHHHHHHHT----TCCSCEEEECCCSSSSCHHHHHTTCC-----SSSEEEEECTTSEEEEEEESC-
T ss_pred EEecccccccCCHHHHHHHHHHc----CCCceEEEcCccchhhHHHHHHcCCC-----CCCEEEEECCCCCEEEEEeCC-
Confidence 995 5788999999998 999999999887 799999987 678999999999999998633
Q ss_pred CCCCCHHHHHHHHHhhcc
Q psy2878 149 NVGRNPIETLRILDAIQT 166 (181)
Q Consensus 149 ~~~~~~~~ll~~l~~l~~ 166 (181)
...+++.+.|+++..
T Consensus 138 ---~~~~~l~~~i~~ll~ 152 (158)
T 3eyt_A 138 ---VSELLLGAEIATLLG 152 (158)
T ss_dssp ---CCHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHhc
Confidence 345677777776654
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=168.33 Aligned_cols=136 Identities=12% Similarity=0.168 Sum_probs=121.0
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++. |.+| +++++++++||++||+|| ++||+.|..+++.|.++++++.++++.+++|
T Consensus 5 ~~~G~~~p~~~l~---------~~~g----~~~~l~~~~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v 70 (148)
T 3hcz_A 5 LLLGKKAPNLYMT---------DTTG----TYRYLYDVQAKYTILFFW-DSQCGHCQQETPKLYDWWLKNRAKGIQVYAA 70 (148)
T ss_dssp CCTTSBCCCCCCB---------CTTS----CBCCGGGCCCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHGGGTEEEEEE
T ss_pred cCCCCcCCceEEe---------cCCC----CEEEhHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 5789999999999 8999 999999999999999998 8899999999999999999999999999999
Q ss_pred ecC-CHHHHHHHHHHcCCCcccc-eeEEEcCCch--HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSD-NEFVKLAWRRENSNLYKLN-HWQFSDTNGS--LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d-~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~--~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
+.| +.+..++|.+++ +++ |+++.|++.. +++.|++. ..|++||||++|+|++.+.+. .+++++
T Consensus 71 ~~d~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~i~-----~~P~~~lid~~G~i~~~~~g~----~~~~~~ 137 (148)
T 3hcz_A 71 NIERKDEEWLKFIRSK----KIGGWLNVRDSKNHTDFKITYDIY-----ATPVLYVLDKNKVIIAKRIGY----ENLDDF 137 (148)
T ss_dssp ECCSSSHHHHHHHHHH----TCTTSEEEECTTCCCCHHHHHCCC-----SSCEEEEECTTCBEEEESCCG----GGHHHH
T ss_pred EecCCHHHHHHHHHHc----CCCCceEEeccccchhHHHhcCcC-----CCCEEEEECCCCcEEEecCCH----HHHHHH
Confidence 998 567889999988 888 9999999888 99999987 678999999999999988432 456777
Q ss_pred HHHHHhh
Q psy2878 158 LRILDAI 164 (181)
Q Consensus 158 l~~l~~l 164 (181)
++.+.++
T Consensus 138 l~~l~~~ 144 (148)
T 3hcz_A 138 LVQYEKS 144 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=167.44 Aligned_cols=140 Identities=13% Similarity=0.185 Sum_probs=123.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|..+|+++|+|++. |.+| +.+++++++||++||+|| ++||+.|..+++.|+++++++.+.++.+++
T Consensus 1 m~~~G~~~p~~~l~---------~~~g----~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~ 66 (153)
T 2l5o_A 1 MSLDSKTAPAFSLP---------DLHG----KTVSNADLQGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNKNFQVLA 66 (153)
T ss_dssp ---CCTTCCSCEEE---------CTTS----CEEEHHHHTTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGTTEEEEE
T ss_pred CCCCCCCCCCcEee---------cCCC----CCccHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccCCeEEEE
Confidence 67799999999999 8999 999999999999999998 889999999999999999999998999999
Q ss_pred Ee--cCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 81 GS--SDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 81 Is--~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
|+ .|+.+..++|++++ +++|+++.|.+..+++.|++. ..|++||||++|+|++.+.+. .+.+++.
T Consensus 67 v~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~i~~~~~g~----~~~~~l~ 133 (153)
T 2l5o_A 67 VAQPIDPIESVRQYVKDY----GLPFTVMYDADKAVGQAFGTQ-----VYPTSVLIGKKGEILKTYVGE----PDFGKLY 133 (153)
T ss_dssp EECTTSCHHHHHHHHHHT----TCCSEEEECSSCHHHHHHTCC-----SSSEEEEECSSSCCCEEEESS----CCHHHHH
T ss_pred EecCCCCHHHHHHHHHHc----CCCceEEcCchHHHHHHcCCC-----ccCeEEEECCCCcEEEEEcCC----CCHHHHH
Confidence 99 56788999999987 999999999999999999987 678999999999999888532 4667888
Q ss_pred HHHHhhccC
Q psy2878 159 RILDAIQTG 167 (181)
Q Consensus 159 ~~l~~l~~~ 167 (181)
+.|+++...
T Consensus 134 ~~l~~ll~~ 142 (153)
T 2l5o_A 134 QEIDTAWRN 142 (153)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 888776543
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=166.38 Aligned_cols=139 Identities=16% Similarity=0.287 Sum_probs=123.5
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
++|+.+|+|++. |.+| +.+++++++||++||+|| ++||+.|..+++.|.++++++.+.++.+++|+
T Consensus 1 ~~G~~~p~~~l~---------~~~g----~~~~l~~~~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~ 66 (151)
T 2f9s_A 1 SEGSDAPNFVLE---------DTNG----KRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVN 66 (151)
T ss_dssp -CCEECCCCEEE---------CTTC----CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred CCCCcCCcceeE---------cCCC----CEEEHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEE
Confidence 479999999999 8999 999999999999999999 88999999999999999999998899999999
Q ss_pred cC-CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 83 SD-NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 83 ~d-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
.| +.+..++|++++ +++|+++.|.+..+++.|++. ..|++||||++|++++.+.+. ...+++.+.|
T Consensus 67 ~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~G~----~~~~~l~~~l 133 (151)
T 2f9s_A 67 VGESKIAVHNFMKSY----GVNFPVVLDTDRQVLDAYDVS-----PLPTTFLINPEGKVVKVVTGT----MTESMIHDYM 133 (151)
T ss_dssp ESCCHHHHHHHHHHH----TCCSCEEEETTSHHHHHTTCC-----SSCEEEEECTTSEEEEEEESC----CCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc----CCCceEEECCchHHHHhcCCC-----CCCeEEEECCCCcEEEEEeCC----CCHHHHHHHH
Confidence 86 467888999988 899999999999999999987 678999999999999988532 3567888888
Q ss_pred HhhccCC
Q psy2878 162 DAIQTGK 168 (181)
Q Consensus 162 ~~l~~~~ 168 (181)
+++..+.
T Consensus 134 ~~ll~~~ 140 (151)
T 2f9s_A 134 NLIKPGE 140 (151)
T ss_dssp HHHSCC-
T ss_pred HHHHhhh
Confidence 8876543
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=170.16 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=110.2
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+.+|+|++. .+| ++++|++++||++||+|| ++||++|+.+++.|++++++|+++++.+++|
T Consensus 7 l~~G~~~P~f~l~----------~~g----~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~v 71 (143)
T 4fo5_A 7 VNPGDLAPRIEFL----------GND----AKASFHNQLGRYTLLNFW-AAYDAESRARNVQLANEVNKFGPDKIAMCSI 71 (143)
T ss_dssp SSTTSBCCCCCC-------------------CCCSCCSSCCEEEEEEE-CTTCHHHHHHHHHHHHHHTTSCTTTEEEEEE
T ss_pred cCCcccCCceEEc----------CCC----CEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhCcCCEEEEEE
Confidence 6799999999883 577 999999999999999998 8899999999999999999999889999999
Q ss_pred ecC-CHHHHHHHHHHcCCCcccce-eEEEcCC---chHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 82 SSD-NEFVKLAWRRENSNLYKLNH-WQFSDTN---GSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 82 s~d-~~~~~~~~~~~~~~~~~~~~-~~~~D~~---~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
|.| +.+..++|++++ +++| ++++|.. ..+++.|++. ..|++||||++|+|++++. ..++
T Consensus 72 s~d~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~-------~~~~ 135 (143)
T 4fo5_A 72 SMDEKESIFTETVKID----KLDLSTQFHEGLGKESELYKKYDLR-----KGFKNFLINDEGVIIAANV-------TPEK 135 (143)
T ss_dssp ECCSCHHHHHHHHHHH----TCCGGGEEECTTGGGSHHHHHTTGG-----GCCCEEEECTTSBEEEESC-------CHHH
T ss_pred EccCCHHHHHHHHHHh----CCCCceeeecccccchHHHHHcCCC-----CCCcEEEECCCCEEEEccC-------CHHH
Confidence 998 466888888887 8999 8889874 6899999987 6789999999999999873 2455
Q ss_pred HHHHHHh
Q psy2878 157 TLRILDA 163 (181)
Q Consensus 157 ll~~l~~ 163 (181)
+.+.|++
T Consensus 136 l~~~l~~ 142 (143)
T 4fo5_A 136 LTEILKA 142 (143)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 5555543
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=170.27 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=120.9
Q ss_pred ccCccCCCcEEecccCCCCCCC-CCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhH-HHHHHHHHHHHHhcCcEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPE-ENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTE-ISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d-~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~-~~~l~~l~~~~~~~~~~vi~ 80 (181)
..|.++|+|++. + .+| +++++++++||++||+|| ++||++|..+ ++.|++++++|+++++.+++
T Consensus 4 ~~g~~~p~~~~~---------~~~~g----~~~~l~~~~gk~vlv~F~-a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~ 69 (160)
T 3lor_A 4 LDNAPLLELDVQ---------EWVNH----EGLSNEDLRGKVVVVEVF-QMLCPGCVNHGVPQAQKIHRMIDESQVQVIG 69 (160)
T ss_dssp CTTCCBCCCCEE---------EESSS----CCCCHHHHTTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTTEEEEE
T ss_pred cCCCcCCCcccc---------cccCC----CccCHHHhCCCEEEEEEE-cCCCcchhhhhhHHHHHHHHHhCcCCcEEEE
Confidence 368999999999 7 789 999999999999999999 7799999996 99999999999988999999
Q ss_pred Eec-------CCHHHHHHHHHHcCCCcccceeEEEcCCch------HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEecc
Q psy2878 81 GSS-------DNEFVKLAWRRENSNLYKLNHWQFSDTNGS------LIDQLGIRHETGVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 81 Is~-------d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
|+. ++.+..++|++++ +++|+++.|.+.. +++.||+. ..|++||||++|+|++++.+.
T Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~ 140 (160)
T 3lor_A 70 LHSVFEHHDVMTPEALKVFIDEF----GIKFPVAVDMPREGQRIPSTMKKYRLE-----GTPSIILADRKGRIRQVQFGQ 140 (160)
T ss_dssp EECCCSCGGGSCHHHHHHHHHHT----TCCSCEEEECCCTTCSSCHHHHHTTCC-----SSSEEEEECTTSBEEEEEESC
T ss_pred EeccccccccCCHHHHHHHHHHc----CCCCcEEECCccccchhhhHHHhcccC-----ccceEEEECCCCcEEEEecCc
Confidence 997 6888999999998 9999999999888 99999987 678999999999999998543
Q ss_pred CCCCCCHHHHHHHHHhhcc
Q psy2878 148 LNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 148 ~~~~~~~~~ll~~l~~l~~ 166 (181)
.+.+++.+.|+++..
T Consensus 141 ----~~~~~l~~~i~~ll~ 155 (160)
T 3lor_A 141 ----VDDFVLGLLLGSLLS 155 (160)
T ss_dssp ----CCHHHHHHHHHHHHT
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 245667777766543
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=164.05 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=120.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecC--CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHH-HhcCcEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITES--SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDF-NERNAIL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~--~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~-~~~~~~v 78 (181)
+.+|+++|+|++. +.+| ++++++ +++||++||+|| ++||+.|+.+++.|.++++++ .+.++.+
T Consensus 5 ~~~g~~~p~~~l~---------~~~g----~~~~l~~~~~~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~ 70 (148)
T 3fkf_A 5 VTVGKSAPYFSLP---------NEKG----EKLSRSAERFRNRYLLLNFW-ASWCDPQPEANAELKRLNKEYKKNKNFAM 70 (148)
T ss_dssp CCTTSBCCCCCEE---------BTTS----CEECTTSTTTTTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHTTTCTTEEE
T ss_pred ccCCCcCCCeEee---------CCCC----CEEeccccccCCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCCCeEE
Confidence 6799999999999 8999 999999 999999999999 889999999999999999999 8788999
Q ss_pred EEEecCC-HHHHHHHHHHcCCCcccceeEEEcC---CchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 79 LGGSSDN-EFVKLAWRRENSNLYKLNHWQFSDT---NGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 79 i~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
++|+.|. .+..++|.+++ +++|+++.|. +..+++.||+. ..|++||||++|+|++.+. ..
T Consensus 71 v~v~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~-------~~ 134 (148)
T 3fkf_A 71 LGISLDIDREAWETAIKKD----TLSWDQVCDFTGLSSETAKQYAIL-----TLPTNILLSPTGKILARDI-------QG 134 (148)
T ss_dssp EEEECCSCHHHHHHHHHHT----TCCSEEECCSCGGGCHHHHHTTCC-----SSSEEEEECTTSBEEEESC-------CH
T ss_pred EEEECCCCHHHHHHHHHHc----CCCceEEEccCCcchHHHHhcCCC-----CcCEEEEECCCCeEEEecC-------CH
Confidence 9999885 56888888887 8999999998 67999999987 6789999999999998883 56
Q ss_pred HHHHHHHHhhc
Q psy2878 155 IETLRILDAIQ 165 (181)
Q Consensus 155 ~~ll~~l~~l~ 165 (181)
+++.+.|+++.
T Consensus 135 ~~l~~~l~~ll 145 (148)
T 3fkf_A 135 EALTGKLKELL 145 (148)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 77777777654
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=171.10 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=121.3
Q ss_pred CccCccCCCcEEecccCCCCCCCC--CcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCc---
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA--- 76 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~--- 76 (181)
+..|.++|+|+++ +. +| ++++|++++||++||+|| ++||+.|+.+++.|++++++|+++++
T Consensus 31 ~~~g~~~p~f~l~---------~~~~~g----~~~~l~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~~~ 96 (183)
T 3lwa_A 31 EADRQQLPDIGGD---------SLMEEG----TQINLSDFENQVVILNAW-GQWCAPCRSESDDLQIIHEELQAAGNGDT 96 (183)
T ss_dssp GGGCCCCCCCEEE---------BSSSTT----CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHCC---C
T ss_pred cccCCCCCceecc---------ccccCC----cEecHHHhCCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4678999999999 88 99 999999999999999999 89999999999999999999999989
Q ss_pred ---EEEEEecCC--HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCC
Q psy2878 77 ---ILLGGSSDN--EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVG 151 (181)
Q Consensus 77 ---~vi~Is~d~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~ 151 (181)
.+++|+.|. .+..++|++++ +++|+++.|++..+.+.|+.+... ..|++||||++|+|++++.+.
T Consensus 97 ~~v~~v~v~~d~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~v~--~~P~~~lid~~G~i~~~~~g~---- 166 (183)
T 3lwa_A 97 PGGTVLGINVRDYSRDIAQDFVTDN----GLDYPSIYDPPFMTAASLGGVPAS--VIPTTIVLDKQHRPAAVFLRE---- 166 (183)
T ss_dssp CSEEEEEEECSCCCHHHHHHHHHHT----TCCSCEEECTTCGGGGGTTTCCTT--CCSEEEEECTTSCEEEEECSC----
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHc----CCCccEEECCcchHHHHhccCCCC--CCCeEEEECCCCcEEEEEcCC----
Confidence 999999987 88899999998 999999999999999999743211 467999999999999998532
Q ss_pred CCHHHHHHHHHhhc
Q psy2878 152 RNPIETLRILDAIQ 165 (181)
Q Consensus 152 ~~~~~ll~~l~~l~ 165 (181)
...+++.+.|+++.
T Consensus 167 ~~~~~l~~~l~~ll 180 (183)
T 3lwa_A 167 VTSKDVLDVALPLV 180 (183)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 35677777777654
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=173.01 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=123.8
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|..+|+|++. |.+| +++++++++||++||+|| ++||++|+.+++.|+++++++++.++.+++|
T Consensus 34 ~~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 99 (186)
T 1jfu_A 34 ASAPLKLPDLAFE---------DADG----KPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAI 99 (186)
T ss_dssp CCSCCBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEE
T ss_pred ccCCCcCCCcEeE---------cCCC----CEeeHHHcCCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 5689999999999 8999 999999999999999999 8899999999999999999999889999999
Q ss_pred ecCCH--HHHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDNE--FVKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~~--~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
+.|.. +..++|++++ ++ .|+++.|++..+++.|++. .. ...|++||||++|+|++++.+. ...+.+++
T Consensus 100 ~~d~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~--~~~P~~~lid~~G~i~~~~~g~--~~~~~~~l 171 (186)
T 1jfu_A 100 NIDTRDPEKPKTFLKEA----NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAGP--AEWASEDA 171 (186)
T ss_dssp ECCCSCTTHHHHHHHHT----TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEESC--CCTTSHHH
T ss_pred ECCCCCHHHHHHHHHHc----CCCCCceEECCcchHHHHhcccccc--CCCCEEEEECCCCCEEEEEecC--CccCHHHH
Confidence 99864 6788999987 77 5999999999999999985 22 2467999999999999998532 33456788
Q ss_pred HHHHHhhccC
Q psy2878 158 LRILDAIQTG 167 (181)
Q Consensus 158 l~~l~~l~~~ 167 (181)
++.|+++..+
T Consensus 172 ~~~l~~ll~~ 181 (186)
T 1jfu_A 172 LKLIRAATGK 181 (186)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcc
Confidence 8888877654
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=170.95 Aligned_cols=139 Identities=17% Similarity=0.310 Sum_probs=123.6
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++.+|+++|+|++. |.+| +.+++++++||++||+|| ++||+.|..+++.|.++++++.+.++.+++
T Consensus 14 ~~~~G~~~p~f~l~---------~~~g----~~~~l~~~~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~ 79 (158)
T 3hdc_A 14 LVRTGALAPNFKLP---------TLSG----ENKSLAQYRGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSFPKGDLVVLA 79 (158)
T ss_dssp CCCTTSBCCCCEEE---------CTTS----CEEESGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHSSTTSEEEEE
T ss_pred ccCCCCcCCCceeE---------cCCC----CEEehHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHcccCCeEEEE
Confidence 36799999999999 8999 999999999999999999 899999999999999999999988999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRI 160 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~ 160 (181)
|+.|. ..++|.+++ +++|+++.|.+..+++.|++. ..|++||||++|+|++++. .....+.+++++.
T Consensus 80 v~~d~--~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~--G~~~~~~~~~~~~ 146 (158)
T 3hdc_A 80 VNVEK--RFPEKYRRA----PVSFNFLSDATGQVQQRYGAN-----RLPDTFIVDRKGIIRQRVT--GGIEWDAPKVVSY 146 (158)
T ss_dssp EECSS--SCCGGGGGC----CCSCEEEECTTSHHHHHTTCC-----SSSEEEEECTTSBEEEEEE--SCCCTTSHHHHHH
T ss_pred EeCCH--HHHHHHHHc----CCCceEEECchHHHHHHhCCC-----CcceEEEEcCCCCEEEEEe--CCCccchHHHHHH
Confidence 99988 455666666 899999999999999999987 6789999999999999995 4445677888888
Q ss_pred HHhhcc
Q psy2878 161 LDAIQT 166 (181)
Q Consensus 161 l~~l~~ 166 (181)
+++.+.
T Consensus 147 ~~~~~~ 152 (158)
T 3hdc_A 147 LKSLEG 152 (158)
T ss_dssp HHTTC-
T ss_pred HHhhcc
Confidence 887653
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=174.84 Aligned_cols=156 Identities=12% Similarity=0.126 Sum_probs=117.4
Q ss_pred CccCccC--CCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCC-ChhHHHHHHHHHHHHHhc---C
Q psy2878 2 KTIGQSL--SSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFV-CPTEISEYNKLVKDFNER---N 75 (181)
Q Consensus 2 l~~G~~~--P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~-C~~~~~~l~~l~~~~~~~---~ 75 (181)
..+|+++ |+|++. |.+| +++++++++||++||+|| ++||+. |+.+++.|+++++++.++ +
T Consensus 13 ~~~g~~~~~p~f~l~---------d~~G----~~v~l~~~~Gk~vlv~F~-at~C~~vC~~~~~~l~~l~~~~~~~~~~~ 78 (200)
T 2b7k_A 13 RGYGKPSLGGPFHLE---------DMYG----NEFTEKNLLGKFSIIYFG-FSNCPDICPDELDKLGLWLNTLSSKYGIT 78 (200)
T ss_dssp ---CCCCCCCCCEEE---------ETTS----CEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hccCCCCcCCCEEEE---------cCCC----CEEeHHHcCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHHHHhhCCc
Confidence 3578886 999999 8999 999999999999999998 889997 999999999999999864 8
Q ss_pred cEEEEEecC----CHHHHHHHHHHcCCCcccceeEEEc---CCchHHHHhCCC-CCC-----C-----cceeeEEEEcCC
Q psy2878 76 AILLGGSSD----NEFVKLAWRRENSNLYKLNHWQFSD---TNGSLIDQLGIR-HET-----G-----VALRATFIFDPQ 137 (181)
Q Consensus 76 ~~vi~Is~d----~~~~~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~gv~-~~~-----g-----~~~p~~~liD~~ 137 (181)
+++++||.| +++.+++|++++ +.+|+.+.+ ....+++.||+. ... | .+.|++||||++
T Consensus 79 v~vv~Is~D~~~d~~~~~~~~~~~~----~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~ 154 (200)
T 2b7k_A 79 LQPLFITCDPARDSPAVLKEYLSDF----HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPE 154 (200)
T ss_dssp CEEEEEESCTTTCCHHHHHHHHTTS----CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTT
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHc----CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCC
Confidence 999999998 578888888877 788888875 347899999986 211 1 145689999999
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHHhhccC---CccccCCC
Q psy2878 138 NIIQHITVNNLNVGRNPIETLRILDAIQTG---KLCACNRT 175 (181)
Q Consensus 138 g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~---~~~~~~~~ 175 (181)
|+|++.+.+........+++.+.|+.+... .-|+.+|-
T Consensus 155 G~i~~~~~g~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~ 195 (200)
T 2b7k_A 155 GQFVDALGRNYDEKTGVDKIVEHVKSYVPAEQRAKQKEAWY 195 (200)
T ss_dssp SCEEEEECTTCCTTHHHHHHHHHHHHCCCC-----------
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHHhhhhhhcchhHHHHH
Confidence 999999854444444566777777777644 45888883
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=172.79 Aligned_cols=142 Identities=11% Similarity=0.036 Sum_probs=113.9
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++++|+.+|+|+++ |.+| +++++++++||++||+|| ++||++|+.+++.|++++++|++++++|++
T Consensus 20 ~~~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~ 85 (183)
T 2obi_A 20 DWRCARSMHEFSAK---------DIDG----HMVNLDKYRGFVCIVTNV-ASQCGKTEVNYTQLVDLHARYAECGLRILA 85 (183)
T ss_dssp CGGGCCSGGGCEEE---------BTTS----CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCcccCcccceEEE---------cCCC----CEeeHHHcCCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHHhcCCeEEEE
Confidence 46899999999999 8999 999999999999999998 889999999999999999999999999999
Q ss_pred EecC--------CHHHHHHHHHHcCCCcccceeEEE--cCCchHHH-Hh----------CCCCCCCcceeeEEEEcCCCc
Q psy2878 81 GSSD--------NEFVKLAWRRENSNLYKLNHWQFS--DTNGSLID-QL----------GIRHETGVALRATFIFDPQNI 139 (181)
Q Consensus 81 Is~d--------~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~-~~----------gv~~~~g~~~p~~~liD~~g~ 139 (181)
|+.| +.+.+++|++++ +++|+++. |.++..++ .| |+....-...|++||||++|+
T Consensus 86 vs~d~~~~~e~~~~~~~~~~~~~~----~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~ 161 (183)
T 2obi_A 86 FPCNQFGKQEPGSNEEIKEFAAGY----NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGC 161 (183)
T ss_dssp EECCCSTTCCCSCHHHHHHHHHTT----TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSC
T ss_pred EECCCCCCCCCCCHHHHHHHHHHc----CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCC
Confidence 9975 577888999887 89999997 66655432 23 432000012479999999999
Q ss_pred EEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 140 IQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 140 i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
|++++.+. ...+++.+.|+++
T Consensus 162 i~~~~~g~----~~~~~l~~~i~~l 182 (183)
T 2obi_A 162 VVKRYGPM----EEPLVIEKDLPHY 182 (183)
T ss_dssp EEEEECTT----SCTHHHHTTSGGG
T ss_pred EEEEeCCC----CCHHHHHHHHHHh
Confidence 99998532 2345666666554
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=168.68 Aligned_cols=141 Identities=12% Similarity=0.043 Sum_probs=110.6
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|+.+|+|+++ |.+| +++++++++||++||+|| ++||++|+.+++.|++++++|+++++++++|
T Consensus 5 ~~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 70 (169)
T 2v1m_A 5 HKSWNSIYEFTVK---------DING----VDVSLEKYRGHVCLIVNV-ACKCGATDKNYRQLQEMHTRLVGKGLRILAF 70 (169)
T ss_dssp --CCCSGGGCEEE---------BTTS----CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred ccCCcccccceee---------cCCC----CCccHHHcCCCEEEEEEe-eccCCchHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 5789999999999 8999 999999999999999998 7899999999999999999999999999999
Q ss_pred ecC--------CHHHHHHH-HHHcCCCcccceeEEE--cCCchHHH-Hh--------CCCCCCCcceeeEEEEcCCCcEE
Q psy2878 82 SSD--------NEFVKLAW-RRENSNLYKLNHWQFS--DTNGSLID-QL--------GIRHETGVALRATFIFDPQNIIQ 141 (181)
Q Consensus 82 s~d--------~~~~~~~~-~~~~~~~~~~~~~~~~--D~~~~~~~-~~--------gv~~~~g~~~p~~~liD~~g~i~ 141 (181)
+.| +.+.+++| .+++ +++|+++. |.++..++ .| |+....-...|++||||++|+|+
T Consensus 71 ~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~ 146 (169)
T 2v1m_A 71 PCNQFGGQEPWAEAEIKKFVTEKY----GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPV 146 (169)
T ss_dssp ECCCSTTCCCSCHHHHHHHHHHHH----CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEE
T ss_pred ECCccCCCCCCCHHHHHHHHHHhc----CCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEE
Confidence 985 36788888 5877 89999996 66665442 23 54310001247999999999999
Q ss_pred EEEeccCCCCCCHHHHHHHHHhh
Q psy2878 142 HITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 142 ~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+++.+.. +.+++.+.|+++
T Consensus 147 ~~~~g~~----~~~~l~~~i~~l 165 (169)
T 2v1m_A 147 KRYSPTT----APYDIEGDIMEL 165 (169)
T ss_dssp EEECTTS----CGGGGHHHHHHH
T ss_pred EEcCCCC----CHHHHHHHHHHH
Confidence 9985322 234555555544
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-27 Score=173.20 Aligned_cols=136 Identities=10% Similarity=0.090 Sum_probs=109.9
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|+++|+|+++ |.+| +++++++++||++||+|| ++|||+|+.+++.|++++++|+++++++++|
T Consensus 23 ~~~g~~~p~f~l~---------~~~G----~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~v~vv~v 88 (181)
T 2p31_A 23 MQQEQDFYDFKAV---------NIRG----KLVSLEKYRGSVSLVVNV-ASECGFTDQHYRALQQLQRDLGPHHFNVLAF 88 (181)
T ss_dssp ----CCGGGCEEE---------BTTS----CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCcCCccCceEee---------cCCC----CEecHHHcCCCEEEEEEe-ccCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 6789999999999 8999 999999999999999998 8899999999999999999999999999999
Q ss_pred ecC--------CHHHHHHHHHH-cCCCcccceeEEEc--CCchHHH---HhCCCCCCCccee-------eEEEEcCCCcE
Q psy2878 82 SSD--------NEFVKLAWRRE-NSNLYKLNHWQFSD--TNGSLID---QLGIRHETGVALR-------ATFIFDPQNII 140 (181)
Q Consensus 82 s~d--------~~~~~~~~~~~-~~~~~~~~~~~~~D--~~~~~~~---~~gv~~~~g~~~p-------~~~liD~~g~i 140 (181)
+.| +.+.+++|+++ + +++|+++.| .++..+. .|++. ..| ++||||++|+|
T Consensus 89 s~d~~~~~e~~~~~~~~~~~~~~~----~~~~p~~~~~d~~g~~~~~~~~~~~~-----~~P~~~~~~~~~~lid~~G~i 159 (181)
T 2p31_A 89 PCNQFGQQEPDSNKEIESFARRTY----SVSFPMFSKIAVTGTGAHPAFKYLAQ-----TSGKEPTWNFWKYLVAPDGKV 159 (181)
T ss_dssp ECCCSTTCCCSCHHHHHHHHHHHH----CCCSCBBCCCCCSSTTSCHHHHHHHH-----HHSCCCCSTTCEEEECTTSCE
T ss_pred ECcCCCCCCCCCHHHHHHHHHhhc----CCCceeEeecccCCccchhhhhhhhh-----cCCCccccceeEEEEcCCCCE
Confidence 986 57788899988 7 889999964 4443322 23332 245 89999999999
Q ss_pred EEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 141 QHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
++++.+. .+.+++.+.|+++
T Consensus 160 ~~~~~g~----~~~~~l~~~i~~l 179 (181)
T 2p31_A 160 VGAWDPT----VSVEEVRPQITAL 179 (181)
T ss_dssp EEEECTT----SCHHHHHHHHHTT
T ss_pred EEEeCCC----CCHHHHHHHHHHH
Confidence 9998532 3467888888765
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=165.23 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=111.2
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
..|+.+|+|++. |.+| +++++++++||++||+|| ++||+.|+.+++.|++++++|+++++++++|+
T Consensus 10 ~~g~~~p~f~l~---------~~~G----~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~ 75 (152)
T 2lrt_A 10 IKEASIIDIQLK---------DLKG----NTRSLTDLKGKVVLIDFT-VYNNAMSAAHNLALRELYNKYASQGFEIYQIS 75 (152)
T ss_dssp SCTTCSCCCCEE---------BTTS----CEECTTTGGGSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred ccCCCCCCeEEE---------cCCC----CEEeHHHhCCCEEEEEEE-cCCChhhHHHHHHHHHHHHHhccCCeEEEEEE
Confidence 478999999999 8999 999999999999999999 68999999999999999999999999999999
Q ss_pred cCCHHH-HHHHHHHcCCCcccceeEEEcCCch---HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 83 SDNEFV-KLAWRRENSNLYKLNHWQFSDTNGS---LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 83 ~d~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
.|+... .++|.. +++|+++.|.++. +++.|++. ..|++||||++|+|++++.+ ..+.++.+
T Consensus 76 ~d~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g----~~~~e~~~ 140 (152)
T 2lrt_A 76 LDGDEHFWKTSAD------NLPWVCVRDANGAYSSYISLYNVT-----NLPSVFLVNRNNELSARGEN----IKDLDEAI 140 (152)
T ss_dssp CSCCHHHHHHHHT------TCSSEEEECSSGGGCHHHHHHTCC-----SCSEEEEEETTTEEEEETTT----CSCHHHHH
T ss_pred ccCCHHHHHHHHh------CCCceEEECCCCcchHHHHHcCcc-----cCceEEEECCCCeEEEecCC----HHHHHHHH
Confidence 987543 333332 4789999999886 99999987 57899999999999998842 24555555
Q ss_pred HHHHh
Q psy2878 159 RILDA 163 (181)
Q Consensus 159 ~~l~~ 163 (181)
..+.+
T Consensus 141 ~~~~~ 145 (152)
T 2lrt_A 141 KKLLE 145 (152)
T ss_dssp HHHHG
T ss_pred HHHHh
Confidence 55443
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=168.57 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=116.8
Q ss_pred CccCccCC-CcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCC-CChhHHHHHHHHHHHHHh--cCcE
Q psy2878 2 KTIGQSLS-SYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF-VCPTEISEYNKLVKDFNE--RNAI 77 (181)
Q Consensus 2 l~~G~~~P-~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp-~C~~~~~~l~~l~~~~~~--~~~~ 77 (181)
|.+|+++| +|+++ |.+| +++++++++||++||+|| ++||| +|+.+++.|+++++++++ .+++
T Consensus 1 m~~G~~~P~~f~l~---------d~~G----~~v~l~~~~Gk~vll~F~-~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~ 66 (170)
T 3me7_A 1 MSLGTYVPGDITLV---------DSYG----NEFQLKNLKGKPIILSPI-YTHCRAACPLITKSLLKVIPKLGTPGKDFW 66 (170)
T ss_dssp -CTTCBCCTTCEEE---------ETTC----CEEEGGGGTTSCEEEEEE-CTTCCSHHHHHHHHHHTTHHHHCCBTTTBE
T ss_pred CCCCCcCCCCeEEE---------cCCc----CEEchHHhCCCEEEEEEE-CCCCCchhHHHHHHHHHHHHHhhhcCCceE
Confidence 46899999 99999 8999 999999999999999999 77997 699999999999999976 4699
Q ss_pred EEEEecC---CHHHHHHHHHHcCCCccc---ceeEEE--c--CCchHHHHhCCC-C--CCC-cceeeEEEEcCCCcEEEE
Q psy2878 78 LLGGSSD---NEFVKLAWRRENSNLYKL---NHWQFS--D--TNGSLIDQLGIR-H--ETG-VALRATFIFDPQNIIQHI 143 (181)
Q Consensus 78 vi~Is~d---~~~~~~~~~~~~~~~~~~---~~~~~~--D--~~~~~~~~~gv~-~--~~g-~~~p~~~liD~~g~i~~~ 143 (181)
+|+||.| +++.+++|++++ +. .|+++. | ...++++.||+. . ..+ .+.|++||||++|+|+++
T Consensus 67 vv~is~d~~d~~~~~~~~~~~~----~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~ 142 (170)
T 3me7_A 67 VITFTFDPKDTLEDIKRFQKEY----GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY 142 (170)
T ss_dssp EEEEECCTTCCHHHHHHHHHHT----TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHc----CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE
Confidence 9999986 578889999987 53 354443 3 337889998875 1 111 346789999999999998
Q ss_pred EeccCCCCCCHHHHHHHHHhhcc
Q psy2878 144 TVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 144 ~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+.+ ...+.++++++|+++..
T Consensus 143 ~~g---~~~~~~~i~~~l~~~~~ 162 (170)
T 3me7_A 143 IYG---VNYNYLEFVNALRLARG 162 (170)
T ss_dssp EES---SSCCHHHHHHHHHHHTT
T ss_pred EeC---CCCCHHHHHHHHHHhhc
Confidence 842 23568999999988764
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=170.74 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=110.2
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+.+|+|+++ |.+| +++++++++||++||+|| ++|||+|+.+++.|++++++|+++++++++|
T Consensus 23 ~~~g~~~p~f~l~---------~~~G----~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~i 88 (185)
T 2gs3_A 23 MRCARSMHEFSAK---------DIDG----HMVNLDKYRGFVCIVTNV-ASQGGKTEVNYTQLVDLHARYAECGLRILAF 88 (185)
T ss_dssp GGGCCCGGGCEEE---------BTTS----CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred ccCCCCcCCceeE---------cCCC----CEeeHHHcCCCEEEEEEe-cCCCCchHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 5689999999999 8999 999999999999999998 8899999999999999999999999999999
Q ss_pred ecC--------CHHHHHHHHHHcCCCcccceeEEE--cCCchHHH-Hh----------CCCCCCCcceeeEEEEcCCCcE
Q psy2878 82 SSD--------NEFVKLAWRRENSNLYKLNHWQFS--DTNGSLID-QL----------GIRHETGVALRATFIFDPQNII 140 (181)
Q Consensus 82 s~d--------~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~-~~----------gv~~~~g~~~p~~~liD~~g~i 140 (181)
+.| +.+.+++|++++ +++|+++. |.++..++ .| |+....-...|++||||++|+|
T Consensus 89 s~d~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i 164 (185)
T 2gs3_A 89 PCNQFGKQEPGSNEEIKEFAAGY----NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCV 164 (185)
T ss_dssp ECCTTTTCCCSCHHHHHHHHHHT----TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCE
T ss_pred ECcccCCCCCCCHHHHHHHHHHc----CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCE
Confidence 975 367888999887 89999997 55554332 33 3220000124799999999999
Q ss_pred EEEEeccCCCCCCHHHHHHHHHh
Q psy2878 141 QHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
++++.+. ...+++.+.|++
T Consensus 165 ~~~~~g~----~~~~~l~~~i~~ 183 (185)
T 2gs3_A 165 VKRYGPM----EEPLVIEKDLPH 183 (185)
T ss_dssp EEEECTT----SCGGGGGGGHHH
T ss_pred EEeeCCC----CCHHHHHHHHHH
Confidence 9998532 223445555544
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-26 Score=163.29 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=120.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++. |.+| +++++++++||++||+|| ++||+.|..+++.|+++++++++.++.+++|
T Consensus 8 ~~~g~~~p~~~l~---------~~~g----~~~~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v 73 (165)
T 3or5_A 8 DARPTPAPSFSGV---------TVDG----KPFSSASLKGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWASRGFTFVGI 73 (165)
T ss_dssp CCCCCBCCCCEEE---------CTTS----CEEEGGGGTTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred hcCCCCCCCceee---------CCCC----CEechhHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 5789999999999 8999 999999999999999999 9999999999999999999999989999999
Q ss_pred ecCC-HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 82 SSDN-EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 82 s~d~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
+.|. .+..++|++++ +++|+++.|.+ ++.+.|+.+ ...-...|++||||++|+|++.+.+. ...+++.+
T Consensus 74 ~~d~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~----~~~~~l~~ 144 (165)
T 3or5_A 74 AVNEQLPNVKNYMKTQ----GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGP----RSKADFDR 144 (165)
T ss_dssp ECSCCHHHHHHHHHHH----TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSC----CCHHHHHH
T ss_pred ECCCCHHHHHHHHHHc----CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCC----CCHHHHHH
Confidence 9886 77888999988 99999999965 889999543 11112578999999999999888432 24677777
Q ss_pred HHHhhcc
Q psy2878 160 ILDAIQT 166 (181)
Q Consensus 160 ~l~~l~~ 166 (181)
.|+++..
T Consensus 145 ~l~~~l~ 151 (165)
T 3or5_A 145 IVKMALG 151 (165)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 7776653
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=166.80 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=108.8
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|+.+|+|++. |.+| +++++++++||++||+|| ++||++|+.+++.|++++++++++++.+++|
T Consensus 6 ~~~g~~~p~f~l~---------~~~g----~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 71 (170)
T 2p5q_A 6 SKNPESVHDFTVK---------DAKE----NDVDLSIFKGKVLLIVNV-ASKCGMTNSNYAEMNQLYEKYKDQGLEILAF 71 (170)
T ss_dssp ----CCGGGCEEE---------BTTS----CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCCccccceEEE---------cCCC----CEecHHHhCCCEEEEEEE-eccCCccHHHHHHHHHHHHHhccCCEEEEEE
Confidence 5689999999999 8999 999999999999999999 6899999999999999999999999999999
Q ss_pred ecC--------CHHHHHHHHH-HcCCCcccceeEE--EcCCchHHH-H--------hCCCCCCCcc-eeeEEEEcCCCcE
Q psy2878 82 SSD--------NEFVKLAWRR-ENSNLYKLNHWQF--SDTNGSLID-Q--------LGIRHETGVA-LRATFIFDPQNII 140 (181)
Q Consensus 82 s~d--------~~~~~~~~~~-~~~~~~~~~~~~~--~D~~~~~~~-~--------~gv~~~~g~~-~p~~~liD~~g~i 140 (181)
+.| +.+.+++|++ ++ +++|+++ .|.++..++ . +++.. .+++ .|++||||++|+|
T Consensus 72 s~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~-~~~p~~~~~~lid~~G~i 146 (170)
T 2p5q_A 72 PCNQFGEEEPGTNDQITDFVCTRF----KSEFPIFDKIDVNGENASPLYRFLKLGKWGIFG-DDIQWNFAKFLVNKDGQV 146 (170)
T ss_dssp ECCTTTTCCCSCHHHHHHHHHHHT----CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTC-SCCCSTTCEEEECTTSCE
T ss_pred ECCCCCCCCCCCHHHHHHHHHHhc----CCCceeEeeeccCCCchHHHHHHHHhcCCCccC-CcccccccEEEECCCCCE
Confidence 985 5778888988 66 8899999 577655432 1 24410 1222 2399999999999
Q ss_pred EEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 141 QHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 141 ~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++++.+. .+.+++.+.|+++.
T Consensus 147 ~~~~~g~----~~~~~l~~~i~~ll 167 (170)
T 2p5q_A 147 VDRYYPT----TSPLSLERDIKQLL 167 (170)
T ss_dssp EEEECTT----SCGGGGHHHHHHHT
T ss_pred EEeeCCC----CCHHHHHHHHHHHh
Confidence 9998532 23345556665543
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-27 Score=173.20 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=110.9
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
|..+.++|+|+++ |.+| ++++|++++||++||+|| ++|||+|+.+++.|++++++|+++++++|+|
T Consensus 20 ~~~~~~~p~f~l~---------d~~G----~~~~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~i 85 (187)
T 3dwv_A 20 MSAASSIFDFEVL---------DADH----KPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAF 85 (187)
T ss_dssp CTTCCSGGGSCCB---------BTTS----CBCCGGGGTTSCEEEEEE-CCBCSCCTTHHHHHHHHHHHHGGGTCEEEEE
T ss_pred hcCCCccCCeEEE---------cCCC----CEeeHHHhCCCEEEEEEe-cCCCCCcHHHHHHHHHHHHHhhhCCeEEEEE
Confidence 6678999999999 9999 999999999999999998 8899999999999999999999999999999
Q ss_pred ecC--------CHHHHHHHHHHcCCCcccceeEEE--cCCchHHH-Hh--------CCCCCCCc-cee---eEEEEcCCC
Q psy2878 82 SSD--------NEFVKLAWRRENSNLYKLNHWQFS--DTNGSLID-QL--------GIRHETGV-ALR---ATFIFDPQN 138 (181)
Q Consensus 82 s~d--------~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~-~~--------gv~~~~g~-~~p---~~~liD~~g 138 (181)
+.| +.+.+++|+++ .++++|+++. |.++..+. .| +++ +. ..| ++||||++|
T Consensus 86 s~d~~~~~e~~~~~~~~~~~~~---~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~---~~~~iP~~~~~~liD~~G 159 (187)
T 3dwv_A 86 PSNQFGGQEPGNEEEIKEFVCT---KFKAEFPIMAKINVNGENAHPLYEYMKKTKPGIL---ATKAIKWNFTSFLIDRDG 159 (187)
T ss_dssp EBCCCSSCSSSBTTHHHHSCCB---CCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSB---SSSSCCSTTCEEEECTTS
T ss_pred ECcccCCCCCCCHHHHHHHHHh---ccCCCCceeeccccCCcchhHHHHHHHhhcCCcc---CCCccccceeEEEECCCC
Confidence 986 35566666652 2489999997 55544332 22 332 21 355 999999999
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 139 IIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 139 ~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+|++++.+. ...+++.+.|+++..
T Consensus 160 ~i~~~~~g~----~~~~~l~~~i~~lL~ 183 (187)
T 3dwv_A 160 VPVERFSPG----ASVKDIEEKLIPLLG 183 (187)
T ss_dssp CEEEEECTT----CCHHHHHHHHHHHC-
T ss_pred CEEEEECCC----CCHHHHHHHHHHHHh
Confidence 999998532 345677777776654
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=170.88 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=112.2
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+..|+.+|+|+++ |.+| +++++++++||++||+|| ++||++|+.+++.|++++++|+++++++|+|
T Consensus 22 ~~~~~~~p~f~l~---------~~~G----~~~~l~~~~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~~~v~vv~v 87 (190)
T 2vup_A 22 MSAASSIFDFEVL---------DADH----KPYNLVQHKGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKSQGFTVLAF 87 (190)
T ss_dssp --CCCSGGGSCCB---------BTTS----SBCCGGGGTTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred CCCCCcccCeEEE---------cCCC----CEEEHHHcCCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5678999999999 8999 999999999999999998 7899999999999999999999999999999
Q ss_pred ecC--------CHHHHHHHH-HHcCCCcccceeEEE--cCCchHHH---------HhCCCCCCCccee------eEEEEc
Q psy2878 82 SSD--------NEFVKLAWR-RENSNLYKLNHWQFS--DTNGSLID---------QLGIRHETGVALR------ATFIFD 135 (181)
Q Consensus 82 s~d--------~~~~~~~~~-~~~~~~~~~~~~~~~--D~~~~~~~---------~~gv~~~~g~~~p------~~~liD 135 (181)
+.| +++.+++|+ +++ +++|+++. |.++.+++ .|++. ..| ++||||
T Consensus 88 s~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~-----~~P~i~~~~~~~lid 158 (190)
T 2vup_A 88 PCNQFGGQEPGNEEEIKEFVCTKF----KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL-----KTKAIKWNFTSFLID 158 (190)
T ss_dssp ECCCSTTCCCSCHHHHHHHHHHHH----CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGG-----GCCSCCSTTCEEEEC
T ss_pred EcCccCCCCCCCHHHHHHHHHHhc----CCCeEEEeecccCcccccHHHHHHHhhcCCcC-----CCccccccceEEEEC
Confidence 987 678889999 787 88999997 55555332 23544 344 899999
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 136 PQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 136 ~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++|+|++++.+. ...+++.+.|+++.
T Consensus 159 ~~G~i~~~~~g~----~~~~~l~~~i~~ll 184 (190)
T 2vup_A 159 RDGVPVERFSPG----ASVKDIEKKLIPLL 184 (190)
T ss_dssp TTSCEEEEECTT----CCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCC----CCHHHHHHHHHHHH
Confidence 999999998532 23466777666554
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=162.78 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=112.6
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCC-ChhHHHHHHHHHHHHHh----cCcEEEEE
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFV-CPTEISEYNKLVKDFNE----RNAILLGG 81 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~-C~~~~~~l~~l~~~~~~----~~~~vi~I 81 (181)
.+|+|++. |.+| +++++++++||++||+|| ++||+. |+.+++.|+++++++++ .++++++|
T Consensus 2 ~ap~f~l~---------~~~G----~~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~v 67 (164)
T 2ggt_A 2 LGGPFSLT---------THTG----ERKTDKDYLGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFI 67 (164)
T ss_dssp CCCCCEEE---------ETTS----CEEEGGGGTTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEE
T ss_pred CCCCeEEE---------eCCC----CEEeHHHcCCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEE
Confidence 57999999 8999 999999999999999998 789998 99999999999999987 48999999
Q ss_pred ecCC----HHHHHHHHHHcCCCcccceeEEE---cCCchHHHHhCCC-CC-----CC----cceeeEEEEcCCCcEEEEE
Q psy2878 82 SSDN----EFVKLAWRRENSNLYKLNHWQFS---DTNGSLIDQLGIR-HE-----TG----VALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 82 s~d~----~~~~~~~~~~~~~~~~~~~~~~~---D~~~~~~~~~gv~-~~-----~g----~~~p~~~liD~~g~i~~~~ 144 (181)
|.|+ ++.+++|++++ +++|+++. |...++++.||+. .. .+ .+.+++||||++|+|++++
T Consensus 68 s~d~~~d~~~~~~~~~~~~----~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 143 (164)
T 2ggt_A 68 SIDPERDTKEAIANYVKEF----SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYF 143 (164)
T ss_dssp ESCTTTCCHHHHHHHHHTT----CSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEE
T ss_pred EeCCCCCCHHHHHHHHHHc----CCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEe
Confidence 9875 67888999887 88999985 4456799999986 00 00 0123899999999999998
Q ss_pred eccCCCCCCHHHHHHHHHhhc
Q psy2878 145 VNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 145 ~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.+. .+.+++.+.|+++.
T Consensus 144 ~g~----~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 144 GQN----KRKGEIAASIATHM 160 (164)
T ss_dssp ETT----CCHHHHHHHHHHHH
T ss_pred CCC----CCHHHHHHHHHHHH
Confidence 532 34577777777654
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=162.42 Aligned_cols=137 Identities=12% Similarity=0.165 Sum_probs=122.0
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++. |.+| +++++++++ |++||+|| ++||+.|..+++.|.++++++ ++.+++|
T Consensus 5 l~~g~~~p~f~l~---------~~~g----~~~~l~~~~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~---~v~~v~v 66 (154)
T 3ia1_A 5 VKPGEPLPDFLLL---------DPKG----QPVTPATVS-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET---GVPFYVI 66 (154)
T ss_dssp CCSBEECCCCCEE---------CTTS----CEECTTTSC-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH---CCCEEEE
T ss_pred CCCCCcCCceEEE---------CCCC----CEechHHcC-CeEEEEEE-cccChhHHHHHHHHHHHHHHc---CCeEEEE
Confidence 6899999999999 8999 999999999 99999999 889999999999999999999 8999999
Q ss_pred ec---CCHHHHHHHHHHcCCCcccceeEEEc---CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 82 SS---DNEFVKLAWRRENSNLYKLNHWQFSD---TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 82 s~---d~~~~~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+. ++.+..++|++++ +++|+++.| .+..+++.|++. ..|++||||++|+|++.+.+. ...+
T Consensus 67 ~~d~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~----~~~~ 133 (154)
T 3ia1_A 67 SREPRDTREVVLEYMKTY----PRFIPLLASDRDRPHEVAARFKVL-----GQPWTFVVDREGKVVALFAGR----AGRE 133 (154)
T ss_dssp ECCTTCCHHHHHHHHTTC----TTEEECBCCSSCCHHHHHTTSSBC-----SSCEEEEECTTSEEEEEEESB----CCHH
T ss_pred eCCCcccHHHHHHHHHHc----CCCcccccccccchHHHHHHhCCC-----cccEEEEECCCCCEEEEEcCC----CCHH
Confidence 99 7788888888887 899999998 678999999987 678999999999999988532 4578
Q ss_pred HHHHHHHhhccCCc
Q psy2878 156 ETLRILDAIQTGKL 169 (181)
Q Consensus 156 ~ll~~l~~l~~~~~ 169 (181)
++.+.|+++.....
T Consensus 134 ~l~~~l~~~~~~~~ 147 (154)
T 3ia1_A 134 ALLDALLLAGADLE 147 (154)
T ss_dssp HHHHHHHHTTCCC-
T ss_pred HHHHHHHhccCccc
Confidence 89999988876543
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=167.25 Aligned_cols=121 Identities=22% Similarity=0.396 Sum_probs=106.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++. |.+| ..+++++++++||++||+|| ++||++|+.+++.|++++++ ++.+++|
T Consensus 30 ~~~G~~~P~f~l~---------~~~g--~~~~~~l~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~vv~v 93 (176)
T 3kh7_A 30 ALIGKPFPAFDLP---------SVQD--PARRLTEADLKGKPALVNVW-GTWCPSCRVEHPELTRLAEQ----GVVIYGI 93 (176)
T ss_dssp TTTTSBCCCCEEE---------BSSC--TTSEEEGGGGCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCEEEEE
T ss_pred cccCCcCCCcEec---------ccCC--CCceecHHHhCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC----CCEEEEE
Confidence 6799999999999 6555 11579999999999999999 88999999999999998775 7999999
Q ss_pred ec-CCHHHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEecc
Q psy2878 82 SS-DNEFVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 82 s~-d~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
+. ++.+..++|++++ +++|+ ++.|.+..+++.|++. ..|++||||++|+|++.+.+.
T Consensus 94 s~~d~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~ 152 (176)
T 3kh7_A 94 NYKDDNAAAIKWLNEL----HNPYLLSISDADGTLGLDLGVY-----GAPETYLIDKQGIIRHKIVGV 152 (176)
T ss_dssp EESCCHHHHHHHHHHT----TCCCSEEEEETTCHHHHHHTCC-----SSCEEEEECTTCBEEEEEESC
T ss_pred eCCCCHHHHHHHHHHc----CCCCceEEECCcchHHHHcCCC-----CCCeEEEECCCCeEEEEEcCC
Confidence 94 6788999999987 88888 5889999999999987 678999999999999998643
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=160.11 Aligned_cols=139 Identities=12% Similarity=0.160 Sum_probs=119.9
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
|.+|+++|+|+++.. |.+| +++++++++||++||+|| ++||+.|..+++.|+++++++.++ +.+++|
T Consensus 1 l~~g~~~P~f~~~~~-------~~~g----~~~~~~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v 67 (148)
T 2b5x_A 1 MKLRQPMPELTGEKA-------WLNG----EVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-LNVVAV 67 (148)
T ss_dssp CCTTCBCCCCCCCSE-------EESC----CCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-SEEEEE
T ss_pred CCCCCCCCCCccccc-------cccC----cccchhhcCCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-cEEEEE
Confidence 568999999999311 7889 999999999999999999 889999999999999999999877 999999
Q ss_pred ecC------CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 82 SSD------NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 82 s~d------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+.| +.+..++|++++ +++|+++.|.+..+++.|++. ..|+++|||++|++++++.+. ...+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~----~~~~ 134 (148)
T 2b5x_A 68 HMPRSEDDLDPGKIKETAAEH----DITQPIFVDSDHALTDAFENE-----YVPAYYVFDKTGQLRHFQAGG----SGMK 134 (148)
T ss_dssp ECCCSTTTSSHHHHHHHHHHT----TCCSCEEECSSCHHHHHTCCC-----CSSEEEEECTTCBEEEEEESC----STTH
T ss_pred EcCCCccccCHHHHHHHHHHc----CCCcceEECCchhHHHHhCCC-----CCCEEEEECCCCcEEEEecCC----CCHH
Confidence 986 578889999987 899999999999999999987 678999999999999988532 2456
Q ss_pred HHHHHHHhhcc
Q psy2878 156 ETLRILDAIQT 166 (181)
Q Consensus 156 ~ll~~l~~l~~ 166 (181)
++.+.|+++..
T Consensus 135 ~l~~~l~~~l~ 145 (148)
T 2b5x_A 135 MLEKRVNRVLA 145 (148)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 67777766543
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=158.69 Aligned_cols=132 Identities=14% Similarity=0.216 Sum_probs=115.6
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+.+|+++|+|++. |.+| +.+++++ +||++||+|| ++||+.|+.+++.|.++++++.+.++.+++|
T Consensus 9 ~~~g~~~p~~~l~---------~~~g----~~~~l~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v 73 (145)
T 3erw_A 9 EKQPAVPAVFLMK---------TIEG----EDISIPN-KGQKTILHFW-TSWCPPCKKELPQFQSFYDAHPSDSVKLVTV 73 (145)
T ss_dssp ---CCSCCEEEEE---------CTTS----CEEEESC-TTSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEE
T ss_pred ccCCCcCCCceee---------cCCC----CEEeHHH-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4689999999999 8999 9999999 9999999999 9999999999999999999998788999999
Q ss_pred ecC----CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSD----NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
+.| +.+..++|.+++ +++|+++.|.+..+++.|++. ..|++||||++|+|++.+.+. ...+++
T Consensus 74 ~~d~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~----~~~~~l 140 (145)
T 3erw_A 74 NLVNSEQNQQVVEDFIKAN----KLTFPIVLDSKGELMKEYHII-----TIPTSFLLNEKGEIEKTKIGP----MTAEQL 140 (145)
T ss_dssp ECGGGSSCHHHHHHHHHHT----TCCSCEEECSSSHHHHHTTCC-----EESEEEEECTTCCEEEEEESC----CCHHHH
T ss_pred EccCCcCCHHHHHHHHHHc----CCceeEEEcCchhHHHhcCcC-----ccCeEEEEcCCCcEEEEEcCC----cCHHHH
Confidence 985 678888999887 899999999999999999987 788999999999999988532 345566
Q ss_pred HHHH
Q psy2878 158 LRIL 161 (181)
Q Consensus 158 l~~l 161 (181)
.+.|
T Consensus 141 ~~~l 144 (145)
T 3erw_A 141 KEWT 144 (145)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5554
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=166.87 Aligned_cols=144 Identities=9% Similarity=0.099 Sum_probs=110.4
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
.+|..+|+|++. |.+| +++++++++||++||+|| ++|||+|+.+++.|++++++|+++++.||+||
T Consensus 13 ~~~~~~p~f~l~---------d~~G----~~v~l~~~~Gk~vlv~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is 78 (180)
T 3kij_A 13 PKINSFYAFEVK---------DAKG----RTVSLEKYKGKVSLVVNV-ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFP 78 (180)
T ss_dssp CCCCCGGGCEEE---------BTTS----CEEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred CCcCcccceEEe---------cCCC----CEecHHHcCCCEEEEEEE-ecCCCCcHHHHHHHHHHHHHhccCCeEEEEEE
Confidence 578999999999 9999 999999999999999888 88999999999999999999999999999999
Q ss_pred cC--------CHHHHHHHHHH-cCCCcccceeEEEcCC--chHHH-HhCCC-CCCCcceee----EEEEcCCCcEEEEEe
Q psy2878 83 SD--------NEFVKLAWRRE-NSNLYKLNHWQFSDTN--GSLID-QLGIR-HETGVALRA----TFIFDPQNIIQHITV 145 (181)
Q Consensus 83 ~d--------~~~~~~~~~~~-~~~~~~~~~~~~~D~~--~~~~~-~~gv~-~~~g~~~p~----~~liD~~g~i~~~~~ 145 (181)
.| +.+.+++|+++ + +++|+++.+.+ +..+. .|+.. ...+ ..|+ +||||++|+|++++.
T Consensus 79 ~d~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~p~~~~~~~lid~~G~i~~~~~ 153 (180)
T 3kij_A 79 CNQFGESEPRPSKEVESFARKNY----GVTFPIFHKIKILGSEGEPAFRFLVDSSK-KEPRWNFWKYLVNPEGQVVKFWR 153 (180)
T ss_dssp CCCSTTCCCSCHHHHHHHHHHHH----CCCSCBBCCCCCSSTTCCHHHHHHHHHHT-CCCSSTTCEEEECTTSCEEEEEC
T ss_pred CCccccCCCCCHHHHHHHHHHhc----CCCCceeeeeeccCccccHHHHHHHhcCC-CCccccceEEEECCCCCEEEEEC
Confidence 64 67889999998 7 89999976422 21111 11111 0000 2356 999999999999996
Q ss_pred ccCCCCCCHHHHHHHHHhhc
Q psy2878 146 NNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 146 ~~~~~~~~~~~ll~~l~~l~ 165 (181)
+........+.+.+.|+++.
T Consensus 154 g~~~~~~l~~~i~~lL~~~~ 173 (180)
T 3kij_A 154 PEEPIEVIRPDIAALVRQVI 173 (180)
T ss_dssp TTCCGGGTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 54444444455555555543
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=158.64 Aligned_cols=140 Identities=13% Similarity=0.179 Sum_probs=119.8
Q ss_pred CCccCccCC-CcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLS-SYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P-~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
++.+|+++| +|++. |.+| +++++++++||++||+|| ++||+.|+.+++.|+++++++.+.++.++
T Consensus 2 ~l~~G~~~p~~f~l~---------~~~g----~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~v 67 (152)
T 2lja_A 2 SLRSGNPSAASFSYP---------DING----KTVSLADLKGKYIYIDVW-ATWCGPCRGELPALKELEEKYAGKDIHFV 67 (152)
T ss_dssp CTTTTCCCSSSCEEE---------ETTT----EEEESTTTTTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTTSSEEEE
T ss_pred ccccCCCCCcccEee---------cCCC----CEeeHHHcCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhccCCeEEE
Confidence 377999999 99999 8999 999999999999999999 88999999999999999999998899999
Q ss_pred EEecCC-HHHHHHHHHHcCCCcccc-eeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 80 GGSSDN-EFVKLAWRRENSNLYKLN-HWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 80 ~Is~d~-~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
+|+.|. .+..++|.+++ +++ ++++.|.+.++++.|++. ..|++||||++|+|++.+.+ ....+++
T Consensus 68 ~v~~d~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g----~~~~~~l 134 (152)
T 2lja_A 68 SLSCDKNKKAWENMVTKD----QLKGIQLHMGTDRTFMDAYLIN-----GIPRFILLDRDGKIISANMT----RPSDPKT 134 (152)
T ss_dssp EEECCSCHHHHHHHHHHH----TCCSEEEECSSCTHHHHHTTCC-----SSCCEEEECTTSCEEESSCC----CTTCHHH
T ss_pred EEEccCcHHHHHHHHHhc----CCCCceeecCcchhHHHHcCcC-----CCCEEEEECCCCeEEEccCC----CCCHHHH
Confidence 999886 46778888877 666 467778889999999987 67899999999999988732 1344677
Q ss_pred HHHHHhhccC
Q psy2878 158 LRILDAIQTG 167 (181)
Q Consensus 158 l~~l~~l~~~ 167 (181)
.+.|+++..+
T Consensus 135 ~~~l~~~~~~ 144 (152)
T 2lja_A 135 AEKFNELLGL 144 (152)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcc
Confidence 7777776543
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-26 Score=164.10 Aligned_cols=132 Identities=13% Similarity=0.193 Sum_probs=116.9
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
.+|+++|+|++. |.+| +++++++++||++||+|| ++||+.|..+++.|.++++++. ++.|++|+
T Consensus 12 ~~g~~~p~~~l~---------~~~g----~~~~l~~~~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~ 75 (165)
T 3ha9_A 12 EVLEREASFSLT---------TIDG----EVISLNNVGGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--EISVIAID 75 (165)
T ss_dssp HHHHHHHCCCEE---------BTTS----CEECGGGCCSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEE
T ss_pred cccCcCCCCEee---------cCCC----CEeeHHHhCCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--CcEEEEEE
Confidence 578999999999 8999 999999999999999999 8999999999999999999998 89999999
Q ss_pred cC-------------------CHHHHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEE
Q psy2878 83 SD-------------------NEFVKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQH 142 (181)
Q Consensus 83 ~d-------------------~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~ 142 (181)
.| +.+..++|++++ ++ +|+++.| +.++++.|++. ..|++||||++|+|++
T Consensus 76 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d-~~~~~~~~~v~-----~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 76 FWTAEALKALGLNKPGYPPPDTPEMFRKFIANY----GDPSWIMVMD-DGSLVEKFNVR-----SIDYIVIMDKSSNVLY 145 (165)
T ss_dssp CCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH----SCTTSEEEEC-CSHHHHHTTCC-----SSSEEEEEETTCCEEE
T ss_pred ecccccccccccccccCCCCCCHHHHHHHHHHc----CCCCeeEEeC-hHHHHHHhCCC-----CceEEEEEcCCCcEEE
Confidence 87 688899999988 88 9999999 99999999987 6789999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHhhc
Q psy2878 143 ITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 143 ~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
. +.. .+.+++.+.|+++.
T Consensus 146 -~-g~~---~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 146 -A-GTT---PSLGELESVIKSVQ 163 (165)
T ss_dssp -E-EES---CCHHHHHHHHHHC-
T ss_pred -e-CCC---CCHHHHHHHHHHHh
Confidence 2 221 15677777777764
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=160.41 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=112.2
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCC-CChhHHHHHHHHHHHHHhc--CcEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF-VCPTEISEYNKLVKDFNER--NAILL 79 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp-~C~~~~~~l~~l~~~~~~~--~~~vi 79 (181)
.+|.++|+|+|. |.+| ++++|++++||++||+|| .+||| .|+.+++.|.++++.+++. ++++|
T Consensus 7 P~~~~~PdF~L~---------d~~G----~~v~l~d~~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v 72 (170)
T 4hde_A 7 PLNWDLETFQFT---------NQDG----KPFGTKDLKGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFV 72 (170)
T ss_dssp CCCBCCCCCEEE---------CTTS----CEEEHHHHTTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCcCCCcEEE---------CCCC----CEEeHHHhCCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhcccccceeE
Confidence 478999999999 9999 999999999999999999 66897 7999999999999999875 48999
Q ss_pred EEecC----CHHHHHHHHHHcCCCcccceeEEEcCCc-hH----HHHhCCC-CC--CC--cceeeEEEEcCCCcEEEEEe
Q psy2878 80 GGSSD----NEFVKLAWRRENSNLYKLNHWQFSDTNG-SL----IDQLGIR-HE--TG--VALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 80 ~Is~d----~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~----~~~~gv~-~~--~g--~~~p~~~liD~~g~i~~~~~ 145 (181)
+||.| +++.+++|++++ ......|.++.+.+. .+ ...|+.. .. .+ .+.+++||||++|+|+..+.
T Consensus 73 ~isvDp~~Dtp~~l~~y~~~~-~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~ 151 (170)
T 4hde_A 73 SFSVDPDLDKPENLKAFIQKF-TEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYS 151 (170)
T ss_dssp EEESCTTTCCHHHHHHHHTTT-CSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEE
T ss_pred eeecCcccccHHHHHHHHHHc-CCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEEC
Confidence 99975 477888888876 222345777776542 22 2335554 11 11 35678999999999999884
Q ss_pred ccCCCCCCHHHHHHHHHhhc
Q psy2878 146 NNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 146 ~~~~~~~~~~~ll~~l~~l~ 165 (181)
.......+++++.|++|.
T Consensus 152 --g~~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 152 --GISNTPYEDIIRDMKRLA 169 (170)
T ss_dssp --SSSSCCHHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHHh
Confidence 223456788888888763
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=170.38 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=106.8
Q ss_pred ccCccCCCcEEecccCCCCCCCCC-cccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEEN-NVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~-G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
..++.+|+|+++ |.+ | ++++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++||+|
T Consensus 21 ~~~~~~p~f~l~---------~~~~G----~~v~l~~~~Gk~vlv~Fw-atwC~~C~~e~p~l~~l~~~~~~~g~~vv~v 86 (208)
T 2f8a_A 21 QSMQSVYAFSAR---------PLAGG----EPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGF 86 (208)
T ss_dssp -CCCCGGGCEEC---------BTTCS----SCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred hhcCccCceEee---------eCCCC----CCccHHHcCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHccCCCeEEEEE
Confidence 467889999999 888 9 999999999999999998 8899999999999999999999999999999
Q ss_pred ecC--------CHHHHHHHHH------HcCCCcccceeEEEcCC--ch----HHH----HhCC--------C-C------
Q psy2878 82 SSD--------NEFVKLAWRR------ENSNLYKLNHWQFSDTN--GS----LID----QLGI--------R-H------ 122 (181)
Q Consensus 82 s~d--------~~~~~~~~~~------~~~~~~~~~~~~~~D~~--~~----~~~----~~gv--------~-~------ 122 (181)
+.| +.+.+++|++ ++ +++||+++|.+ +. +.+ .++. . .
T Consensus 87 ~~d~~~~~e~d~~~~i~~f~~~~~~~~~~----~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (208)
T 2f8a_A 87 PCNQFGHQENAKNEEILNSLKYVRPGGGF----EPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW 162 (208)
T ss_dssp ECCCSTTTTCSCHHHHHHHHHHTSSCTTC----CCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCS
T ss_pred ECCcccccCCCCHHHHHHHHHhccccccc----ccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccc
Confidence 986 4578888887 55 89999997533 22 221 2220 0 0
Q ss_pred ----CCCc-ceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 123 ----ETGV-ALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 123 ----~~g~-~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
..++ ..|++||||++|+|++++.+... .+++.+.|+++
T Consensus 163 ~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~----~~~l~~~I~~l 205 (208)
T 2f8a_A 163 SPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQ----TIDIEPDIEAL 205 (208)
T ss_dssp SSCCTTCCCSTTCEEEECTTSCEEEEECTTSC----GGGGHHHHHHH
T ss_pred cccccCccccCceEEEEcCCCcEEEEeCCCCC----HHHHHHHHHHH
Confidence 0012 24899999999999999953322 24555555544
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=161.13 Aligned_cols=125 Identities=12% Similarity=0.128 Sum_probs=109.2
Q ss_pred CCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccce
Q psy2878 25 ENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNH 104 (181)
Q Consensus 25 ~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~ 104 (181)
.+| +++++++++||++||+|| ++||++|+.+++.|.++++++++.++.+++|+.|+.+.+++|++++ +++|
T Consensus 12 ~~G----~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~----~~~~ 82 (151)
T 3raz_A 12 KDN----TPQSLQSLKAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQT----PVSY 82 (151)
T ss_dssp TTC----CEECGGGCCSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHS----CCSS
T ss_pred cCC----CEecHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHc----CCCC
Confidence 688 999999999999999999 8899999999999999999998889999999999999999999998 9999
Q ss_pred eEEEcCC---chHHHHhC--CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccC
Q psy2878 105 WQFSDTN---GSLIDQLG--IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 105 ~~~~D~~---~~~~~~~g--v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~ 167 (181)
+++.|.. ..+++.|| +. ..|++||||++|+|++++.+. ...+++.+.|+++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l~~l~~~ 141 (151)
T 3raz_A 83 PIWRYTGANSRNFMKTYGNTVG-----VLPFTVVEAPKCGYRQTITGE----VNEKSLTDAVKLAHSK 141 (151)
T ss_dssp CEEEECCSCHHHHHHTTTCCSC-----CSSEEEEEETTTTEEEECCSC----CCHHHHHHHHHHHHTC
T ss_pred ceEecCccchHHHHHHhCCccC-----CCCEEEEECCCCcEEEEECCC----CCHHHHHHHHHHHHHH
Confidence 9998864 56888888 54 568999999999999988532 3467777777777654
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=158.19 Aligned_cols=135 Identities=10% Similarity=0.217 Sum_probs=111.3
Q ss_pred CCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCC-ChhHHHHHHHHHHHHHh----cCcEEEEEec
Q psy2878 9 SSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFV-CPTEISEYNKLVKDFNE----RNAILLGGSS 83 (181)
Q Consensus 9 P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~-C~~~~~~l~~l~~~~~~----~~~~vi~Is~ 83 (181)
|+|++. |.+| +++++++++||++||+|| ++||+. |+.+++.|++++++|++ .++++++||.
T Consensus 7 p~f~l~---------~~~G----~~~~l~~~~gk~vll~F~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~ 72 (171)
T 2rli_A 7 GDFHLL---------DHRG----RARCKADFRGQWVLMYFG-FTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITV 72 (171)
T ss_dssp SCCEEE---------ETTS----CEEETTTTTTSEEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEES
T ss_pred CCeEEE---------eCCC----CEEeHHHhCCCEEEEEEE-cCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEE
Confidence 899999 8999 999999999999999998 889997 99999999999999986 5899999998
Q ss_pred C----CHHHHHHHHHHcCCCcccceeEEEcCC---chHHHHhCCC-CC-C-----C---cceeeEEEEcCCCcEEEEEec
Q psy2878 84 D----NEFVKLAWRRENSNLYKLNHWQFSDTN---GSLIDQLGIR-HE-T-----G---VALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 84 d----~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~-~~-~-----g---~~~p~~~liD~~g~i~~~~~~ 146 (181)
| +++.+++|++++ +++|+++.|.. .++++.||+. .. . + .+.|++||||++|+|++++.+
T Consensus 73 d~~~d~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 148 (171)
T 2rli_A 73 DPERDDVEAMARYVQDF----HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGR 148 (171)
T ss_dssp CSTTCCHHHHHHHHHTT----CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEES
T ss_pred CCCCCCHHHHHHHHHHc----CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECC
Confidence 7 477888999887 88999998743 5799999987 11 0 0 134589999999999999853
Q ss_pred cCCCCCCHHHHHHHHHhhc
Q psy2878 147 NLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 147 ~~~~~~~~~~ll~~l~~l~ 165 (181)
. .+.+++.+.|+++.
T Consensus 149 ~----~~~~~l~~~l~~ll 163 (171)
T 2rli_A 149 S----RSAEQISDSVRRHM 163 (171)
T ss_dssp S----CCHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHH
Confidence 2 24566777666554
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=166.43 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=107.6
Q ss_pred cCccCCCcEEecccCCCCCCCCC-cccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEEN-NVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~-G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
.+..+|+|+++ |.+ | ++++|++++||++||+|| ++||+.|+ +++.|++++++|+++|++||+|+
T Consensus 31 ~~~~~pdF~l~---------d~~~G----~~v~Lsd~~GKvvll~Fw-At~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs 95 (215)
T 2i3y_A 31 EKGTIYDYEAI---------ALNKN----EYVSFKQYVGKHILFVNV-ATYCGLTA-QYPELNALQEELKPYGLVVLGFP 95 (215)
T ss_dssp CCCCGGGCEEE---------BSSSS----CEEEGGGGTTSEEEEEEE-CSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEE
T ss_pred ccCCcCCcEee---------eCCCC----CEEcHHHhCCCEEEEEEe-CCCCCChH-hHHHHHHHHHHhccCCeEEEEEE
Confidence 46789999999 899 9 999999999999999998 89999998 99999999999999999999999
Q ss_pred cC--------CHHHHHHHHH------HcCCCcccceeEEEcCC--chH-HHHhCC-----------CC-----------C
Q psy2878 83 SD--------NEFVKLAWRR------ENSNLYKLNHWQFSDTN--GSL-IDQLGI-----------RH-----------E 123 (181)
Q Consensus 83 ~d--------~~~~~~~~~~------~~~~~~~~~~~~~~D~~--~~~-~~~~gv-----------~~-----------~ 123 (181)
.| +.+.+++|++ ++ +++||++.|.+ +.. ...|+. .. .
T Consensus 96 ~d~f~~~e~~~~~~i~~f~~~~~~~~~~----~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~ 171 (215)
T 2i3y_A 96 CNQFGKQEPGDNKEILPGLKYVRPGGGF----VPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKV 171 (215)
T ss_dssp CCCSTTCCCSCHHHHHHHHHHTSSCTTC----CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCT
T ss_pred ccccCcCCCCCHHHHHHHHHhccchhcc----CccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccc
Confidence 64 4577888988 66 89999998643 322 111211 10 0
Q ss_pred CCc-ceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 124 TGV-ALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 124 ~g~-~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
..+ ..|++||||++|+|++++.+. ...+++.+.|+++.
T Consensus 172 ~~i~~npttfLID~~G~vv~~~~g~----~~~~~l~~~I~~ll 210 (215)
T 2i3y_A 172 HDIRWNFEKFLVGPDGIPVMRWSHR----ATVSSVKTDILAYL 210 (215)
T ss_dssp TCCCSTTCEEEECTTSCEEEEECTT----SCHHHHHHHHHHHG
T ss_pred cccccCceEEEECCCCeEEEEeCCC----CCHHHHHHHHHHHH
Confidence 011 136899999999999998532 23467777777664
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=180.83 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=119.2
Q ss_pred CccCccCCCcE-----EecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCc
Q psy2878 2 KTIGQSLSSYR-----VIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76 (181)
Q Consensus 2 l~~G~~~P~f~-----l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~ 76 (181)
+.+|+++|+|+ +. |.+| +++++++++||++||+|| ++||++|+.+++.|++++++|+++++
T Consensus 51 l~vG~~aPdF~~~~~wL~---------d~dG----~~vsLsdl~GK~vLl~F~-atwC~~C~~~~p~L~~l~~~~~~~~v 116 (352)
T 2hyx_A 51 LESCGTAPDLKGITGWLN---------TPGN----KPIDLKSLRGKVVLIDFW-AYSCINCQRAIPHVVGWYQAYKDSGL 116 (352)
T ss_dssp CCCCCBCCCCCSCCEEES---------SGGG----CCCCGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTE
T ss_pred cCCCCcCCCccccccccC---------CCCC----CEEcHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhhcCCe
Confidence 57899999999 77 8999 999999999999999999 79999999999999999999999899
Q ss_pred EEEEEecC------CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC
Q psy2878 77 ILLGGSSD------NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV 150 (181)
Q Consensus 77 ~vi~Is~d------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~ 150 (181)
.||+|+.| +++..++|++++ +++|+++.|.+..+++.|++. ..|++||||++|+|++++.+.
T Consensus 117 ~vi~Vs~d~~~~~d~~~~~~~~~~~~----~l~fpv~~D~~~~l~~~ygV~-----~~Pt~~lID~~G~Iv~~~~G~--- 184 (352)
T 2hyx_A 117 AVIGVHTPEYAFEKVPGNVAKGAANL----GISYPIALDNNYATWTNYRNR-----YWPAEYLIDATGTVRHIKFGE--- 184 (352)
T ss_dssp EEEEEECCSSGGGGCHHHHHHHHHHH----TCCSCEEECTTSHHHHHTTCC-----EESEEEEECTTSBEEEEEESB---
T ss_pred EEEEEECCcccccCCHHHHHHHHHHc----CCCccEEeCCcHHHHHHcCCC-----ccCEEEEEeCCCeEEEEEcCC---
Confidence 99999974 578889999988 899999999999999999987 678999999999999998643
Q ss_pred CCCHHHHHHHHHhh
Q psy2878 151 GRNPIETLRILDAI 164 (181)
Q Consensus 151 ~~~~~~ll~~l~~l 164 (181)
...+++.+.|+++
T Consensus 185 -~~~~~l~~~I~~l 197 (352)
T 2hyx_A 185 -GDYNVTETLVRQL 197 (352)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 2344555554443
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=166.17 Aligned_cols=132 Identities=11% Similarity=0.148 Sum_probs=96.4
Q ss_pred CccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 5 GQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 5 G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
|..+|+|+++ |.+| ++++|++++||++||+|| ++||++|+ +++.|++++++|+++++.+++||.|
T Consensus 9 ~~~~~~f~l~---------d~~G----~~~~l~~~~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d 73 (171)
T 3cmi_A 9 MSEFYKLAPV---------DKKG----QPFPFDQLKGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCN 73 (171)
T ss_dssp -CGGGGCCCB---------BTTS----CBCCGGGGTTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred hhheeeeEEE---------cCCC----CEecHHHcCCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECc
Confidence 6778999999 9999 999999999999999999 88999999 9999999999999999999999974
Q ss_pred --------CHHHHHHHH-HHcCCCcccceeEEEcCC--ch-HH--------HHhCCCCCCCccee------eEEEEcCCC
Q psy2878 85 --------NEFVKLAWR-RENSNLYKLNHWQFSDTN--GS-LI--------DQLGIRHETGVALR------ATFIFDPQN 138 (181)
Q Consensus 85 --------~~~~~~~~~-~~~~~~~~~~~~~~~D~~--~~-~~--------~~~gv~~~~g~~~p------~~~liD~~g 138 (181)
+.+.+++|+ +++ +++|+++.|.+ +. .+ +.|++. ..| ++||||++|
T Consensus 74 ~~~~~~~d~~~~~~~~~~~~~----~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~-----~~P~i~~~~~~~lid~~G 144 (171)
T 3cmi_A 74 QFGHQEPGSDEEIAQFCQLNY----GVTFPIMKKIDVNGGNEDPVYKFLKSQKSGML-----GLRGIKWNFEKFLVDKKG 144 (171)
T ss_dssp SCC----------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSS-----SCCSCCSTTCEEEECSSS
T ss_pred ccCCCCCCCHHHHHHHHHhcc----CCCceEEeeccCCCccchHHHHHHHhccCCcC-----CCCcccccceEEEECCCC
Confidence 556777888 766 89999998744 32 22 235554 356 899999999
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 139 IIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 139 ~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+|++++.+.. +.+++.+.|+++
T Consensus 145 ~i~~~~~g~~----~~~~l~~~i~~l 166 (171)
T 3cmi_A 145 KVYERYSSLT----KPSSLSETIEEL 166 (171)
T ss_dssp CEEEEECTTS----CGGGGHHHHHHH
T ss_pred CEEEEeCCCC----CHHHHHHHHHHH
Confidence 9999985322 234455555444
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-25 Score=165.12 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=104.5
Q ss_pred cCccCCCcEEecccCCCCCCCCC-cccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEEN-NVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~-G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
....+|+|+++ |.+ | ++++|++++||++||+|| ++||+.| .+++.|++++++|+++|++||+||
T Consensus 13 ~~~~~pdF~l~---------d~~~G----~~v~Ls~~kGKvvll~F~-At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs 77 (207)
T 2r37_A 13 ISGTIYEYGAL---------TIDGE----EYIPFKQYAGKYVLFVNV-ASYGGLT-GQYIELNALQEELAPFGLVILGFP 77 (207)
T ss_dssp --CCGGGCEEE---------BTTSS----CEEEGGGGTTSEEEEEEE-CSSSTTT-THHHHHHHHHHHHGGGTEEEEEEE
T ss_pred ccCccCCeEee---------eCCCC----CEEcHHHhCCCEEEEEEe-CCCCCCh-HHHHHHHHHHHHhccCCEEEEEEE
Confidence 35679999999 899 9 999999999999999998 8999999 799999999999999999999999
Q ss_pred cC--------CHHHHHHHHH------HcCCCcccceeEEEcCC--chH-HHHhCCC--------CCC-------------
Q psy2878 83 SD--------NEFVKLAWRR------ENSNLYKLNHWQFSDTN--GSL-IDQLGIR--------HET------------- 124 (181)
Q Consensus 83 ~d--------~~~~~~~~~~------~~~~~~~~~~~~~~D~~--~~~-~~~~gv~--------~~~------------- 124 (181)
.| +.+.+++|++ ++ +++||++.|.+ +.. ...|+.. ...
T Consensus 78 ~d~f~~~e~~~~~~i~~f~~~~~~~~~~----~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~ 153 (207)
T 2r37_A 78 CNQFGKQEPGENSEILPTLKYVRPGGGF----VPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKV 153 (207)
T ss_dssp CCCBTTCCCSCHHHHHHHHHHTSSCTTC----CCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCT
T ss_pred CcccCcCCCCCHHHHHHHHHhcchhhcc----CccceeeeEeccCCcccchHHHHHHhhCcccccccccccccccccccc
Confidence 54 4578888998 66 89999998643 332 1112111 000
Q ss_pred -Cc-ceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 125 -GV-ALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 125 -g~-~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.+ ..|++||||++|+|++++.+.. ..+++.+.|+++.
T Consensus 154 ~~i~~~~ttflID~~G~i~~~~~g~~----~~~~l~~~I~~ll 192 (207)
T 2r37_A 154 HDIRWNFEKFLVGPDGIPIMRWHHRT----TVSNVKMDILSYM 192 (207)
T ss_dssp TCCCSTTCEEEECTTSCEEEEECTTS----CHHHHHHHHHHHH
T ss_pred CcccccceEEEECCCCcEEEEECCCC----CHHHHHHHHHHHH
Confidence 11 2378999999999999985322 3355555555543
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=151.56 Aligned_cols=130 Identities=15% Similarity=0.291 Sum_probs=112.6
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE-----
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG----- 81 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I----- 81 (181)
++|+|++. |.+| +++++++++||++||+|| ++||+.|..+++.|+++++++ ..++.+++|
T Consensus 1 ~~p~f~l~---------~~~g----~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~-~~~~~~v~i~~~~~ 65 (138)
T 4evm_A 1 EVADFELM---------GVDG----KTYRLSDYKGKKVYLKFW-ASWCSICLASLPDTDEIAKEA-GDDYVVLTVVSPGH 65 (138)
T ss_dssp CCCCCEEE---------BTTS----CEEEGGGGTTSEEEEEEC-CTTCHHHHHHHHHHHHHHHTC-TTTEEEEEEECTTS
T ss_pred CCCcceeE---------CCCC----CEEEHHHhCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHh-CCCcEEEEEEcCCC
Confidence 48999999 8999 999999999999999999 889999999999999999984 457999999
Q ss_pred -ecCCHHHHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHH
Q psy2878 82 -SSDNEFVKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLR 159 (181)
Q Consensus 82 -s~d~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~ 159 (181)
+.++.+..++|.+++ ++ +|+++.|.+..+++.|++. ..|++||||++|+|++.+.+. ...+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~----~~~~~l~~ 132 (138)
T 4evm_A 66 KGEQSEADFKNWYKGL----DYKNLPVLVDPSGKLLETYGVR-----SYPTQAFIDKEGKLVKTHPGF----MEKDAILQ 132 (138)
T ss_dssp TTCCCHHHHHHHHTTC----CCTTCCEEECTTCHHHHHTTCC-----SSSEEEEECTTCCEEEEEESC----CCHHHHHH
T ss_pred CchhhHHHHHHHHhhc----CCCCeeEEECcchHHHHHcCcc-----cCCeEEEECCCCcEEEeecCC----CcHHHHHH
Confidence 345677888888876 77 8999999999999999987 678999999999999998532 34677888
Q ss_pred HHHhh
Q psy2878 160 ILDAI 164 (181)
Q Consensus 160 ~l~~l 164 (181)
.|+++
T Consensus 133 ~l~~l 137 (138)
T 4evm_A 133 TLKEL 137 (138)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 87765
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-27 Score=170.17 Aligned_cols=140 Identities=16% Similarity=0.227 Sum_probs=116.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHH-HHHHHH-hcCcEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNK-LVKDFN-ERNAILL 79 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~-l~~~~~-~~~~~vi 79 (181)
+.+|+.+|+|++. |.+| +++++++++||++||+|| ++||+.|+.+++.|.+ ++++++ +.++.++
T Consensus 7 l~~g~~~p~f~l~---------~~~g----~~~~l~~~~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv 72 (159)
T 2ls5_A 7 VRIGEMAPDFTIT---------LTDG----KQVTLSSLRGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHKDNADFALI 72 (159)
Confidence 5789999999999 8999 999999999999999998 8899999999999998 999998 7789999
Q ss_pred EEecCCH-HHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 80 GGSSDNE-FVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 80 ~Is~d~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
+|+.|.. +..++|.+++ +++|+++.|++..+++.|++. ....|++||||++|+|++++.+ ....++++++
T Consensus 73 ~v~~d~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~---~~~~P~~~lid~~G~i~~~~~g--~~~~~l~~~l 143 (159)
T 2ls5_A 73 GIDRDEPLEKVLAFAKST----GVTYPLGLDPGADIFAKYALR---DAGITRNVLIDREGKIVKLTRL--YNEEEFASLV 143 (159)
Confidence 9998864 4577777776 889999999999999999963 1136799999999999998842 2223455555
Q ss_pred HHHHhh
Q psy2878 159 RILDAI 164 (181)
Q Consensus 159 ~~l~~l 164 (181)
+.|.+.
T Consensus 144 ~~l~~~ 149 (159)
T 2ls5_A 144 QQINEM 149 (159)
Confidence 555443
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=149.43 Aligned_cols=132 Identities=14% Similarity=0.217 Sum_probs=116.1
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|..+|+|++. +.+| +.+++++++||+++|+|| ++||+.|..+++.|+++++++. ++.+++|+.
T Consensus 1 ~~~~~p~~~~~---------~~~g----~~~~l~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~ 64 (136)
T 1zzo_A 1 TVPAQLQFSAK---------TLDG----HDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAG 64 (136)
T ss_dssp CCCGGGCCEEE---------BTTS----CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEEC
T ss_pred CCCCCCCcccc---------cCCC----CEeeHHHhCCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeC
Confidence 47889999999 8999 999999999999999999 8899999999999999999987 899999998
Q ss_pred CC-HHHHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 84 DN-EFVKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 84 d~-~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
|. .+..++|.+++ ++ +|+++.|.+..+++.|++. ..|+++|||++|+++ .+.+. ...+++.+.|
T Consensus 65 ~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~i~-----~~P~~~~id~~g~i~-~~~g~----~~~~~l~~~l 130 (136)
T 1zzo_A 65 LDQVPAMQEFVNKY----PVKTFTQLADTDGSVWANFGVT-----QQPAYAFVDPHGNVD-VVRGR----MSQDELTRRV 130 (136)
T ss_dssp SSCHHHHHHHHHHT----TCTTSEEEECTTCHHHHHTTCC-----SSSEEEEECTTCCEE-EEESC----CCHHHHHHHH
T ss_pred CCCHHHHHHHHHHc----CCCceEEEEcCCcHHHHHcCCC-----CCceEEEECCCCCEE-EEecC----CCHHHHHHHH
Confidence 75 78888999887 88 9999999999999999987 678999999999999 66432 3467777777
Q ss_pred Hhhc
Q psy2878 162 DAIQ 165 (181)
Q Consensus 162 ~~l~ 165 (181)
+++.
T Consensus 131 ~~~l 134 (136)
T 1zzo_A 131 TALT 134 (136)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7653
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=150.30 Aligned_cols=132 Identities=11% Similarity=0.168 Sum_probs=116.0
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
..+|+|++. |.+| +.+++++++||+++|+|| ++||+.|..+++.|+++++++. ++.+++|+.+.
T Consensus 2 ~~~p~~~l~---------~~~g----~~~~l~~~~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~ 65 (136)
T 1lu4_A 2 DERLQFTAT---------TLSG----APFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRA 65 (136)
T ss_dssp GGGGCCEEE---------BTTS----CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS
T ss_pred CCCCCeEee---------cCCC----CeecHHHhCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCC
Confidence 468999999 8999 999999999999999999 8899999999999999999997 89999999876
Q ss_pred -HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 86 -EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.+..++|++++ +++|+++.|.+..+++.|++. ..|+++|+|++|+|+ ++.+ .....+.+++.+.|+++
T Consensus 66 ~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~i~-----~~P~~~lid~~G~i~-~~~~-~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 66 DVGAMQSFVSKY----NLNFTNLNDADGVIWARYNVP-----WQPAFVFYRADGTST-FVNN-PTAAMSQDELSGRVAAL 134 (136)
T ss_dssp CHHHHHHHHHHH----TCCSEEEECTTSHHHHHTTCC-----SSSEEEEECTTSCEE-EECC-SSSCCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHc----CCCceEEECCchhHHHhcCCC-----CCCEEEEECCCCcEE-EEEc-CCCccCHHHHHHHHHHH
Confidence 88899999988 889999999999999999987 678999999999999 6631 11124578888888765
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-25 Score=159.40 Aligned_cols=140 Identities=11% Similarity=0.128 Sum_probs=117.6
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCC-ChhHHHHHHHHHHHHHhc---CcEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFV-CPTEISEYNKLVKDFNER---NAIL 78 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~-C~~~~~~l~~l~~~~~~~---~~~v 78 (181)
.+|+.+|+|++. |.+| ++++++++||++||+|| ++||+. |+.+++.|++++++++++ ++++
T Consensus 11 ~~G~~~p~f~l~---------~~~g-----~~~l~~~~gk~vll~f~-~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~v 75 (172)
T 2k6v_A 11 LLNPKPVDFALE---------GPQG-----PVRLSQFQDKVVLLFFG-FTRCPDVCPTTLLALKRAYEKLPPKAQERVQV 75 (172)
T ss_dssp EEEEEECCCEEE---------CSSS-----EEEGGGSTTSEEEEEEE-CTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEE
T ss_pred ccCCCCCCeEEE---------cCCC-----CCcHHHhCCCEEEEEEE-CCCCcchhHHHHHHHHHHHHHhhhhccCCEEE
Confidence 368899999999 7776 68999999999999998 789997 999999999999999876 7999
Q ss_pred EEEecC----CHHHHHHHHHHcCCCcccceeEEEcCC---chHHHHhCCC-CCC--------C-cceeeEEEEcCCCcEE
Q psy2878 79 LGGSSD----NEFVKLAWRRENSNLYKLNHWQFSDTN---GSLIDQLGIR-HET--------G-VALRATFIFDPQNIIQ 141 (181)
Q Consensus 79 i~Is~d----~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~-~~~--------g-~~~p~~~liD~~g~i~ 141 (181)
++||.| +++.+++|++++ +++|++++|++ .++++.||+. ... + .+.|++|||| +|+|+
T Consensus 76 v~is~d~~~d~~~~~~~~~~~~----~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~ 150 (172)
T 2k6v_A 76 IFVSVDPERDPPEVADRYAKAF----HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLV 150 (172)
T ss_dssp EEEESCTTTCCHHHHHHHHHHH----CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHh----CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEE
Confidence 999976 468899999998 89999999987 6899999986 211 1 2468999999 99999
Q ss_pred EEEeccCCCCCCHHHHHHHHHhh
Q psy2878 142 HITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 142 ~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+++.+.. ..+.+++++.|+++
T Consensus 151 ~~~~g~~--~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 151 LLYSPDK--AEATDRVVADLQAL 171 (172)
T ss_dssp EEECHHH--HTCHHHHHHHHHHC
T ss_pred EEECCCC--CCCHHHHHHHHHHh
Confidence 9985332 33678888888765
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-24 Score=154.43 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=104.3
Q ss_pred CccCccCCCcEEecccCCCCCCCC--CcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEE--NNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~--~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
+.+|+.+|+|+++ |. +| ++++++++ +||++||+|| ++||++|+.+++.|++++++ ++.+
T Consensus 22 ~~~G~~~P~f~l~---------~~~~~g----~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~----~v~v 83 (168)
T 2b1k_A 22 ALIGKPVPKFRLE---------SLDNPG----QFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ----GIRV 83 (168)
T ss_dssp TTTTSBCCCCEEE---------ESSSTT----CEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT----TCCE
T ss_pred cccCCcCCCeEee---------cccCCC----cEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC----CCEE
Confidence 4689999999999 77 88 99999885 8999999999 88999999999999888765 8999
Q ss_pred EEEecC-CHHHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 79 LGGSSD-NEFVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 79 i~Is~d-~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
++|+.+ +.+..++|.+++ +++|+ ++.|.+..+++.|++. ..|++||||++|+|++++.+
T Consensus 84 v~v~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g 144 (168)
T 2b1k_A 84 VGMNYKDDRQKAISWLKEL----GNPYALSLFDGDGMLGLDLGVY-----GAPETFLIDGNGIIRYRHAG 144 (168)
T ss_dssp EEEEESCCHHHHHHHHHHH----CCCCSEEEEETTCHHHHHHTCC-----SSSEEEEECTTSBEEEEEES
T ss_pred EEEECCCChHHHHHHHHHc----CCCCceeeECcchHHHHHcCcc-----ccCEEEEECCCCeEEEEEeC
Confidence 999964 577888899887 88888 5789999999999987 57899999999999998853
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-24 Score=149.70 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=103.5
Q ss_pred cCccCCC-cEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEE
Q psy2878 4 IGQSLSS-YRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILLGG 81 (181)
Q Consensus 4 ~G~~~P~-f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~I 81 (181)
+|+.+|+ |++. |.+| +++++++++||++||+|| ++||++|+.+++.|+++++++++ .++.+++|
T Consensus 3 ~~~~~P~~f~l~---------~~~g----~~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v 68 (144)
T 1i5g_A 3 LKKFFPYSTNVL---------KGAA----ADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI 68 (144)
T ss_dssp TTTSCSSCSEEE---------ETTE----EEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred hhhhCCCceEEE---------cCCC----CEecHHHcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 6889999 9999 8999 999999999999999998 78999999999999999999985 68999999
Q ss_pred ecC-CHHHHHHHHHHcCCCcccceeEEE-cCCchHHHHhCCCCCCCcceeeEEEEc-CCCcEEEEEe
Q psy2878 82 SSD-NEFVKLAWRRENSNLYKLNHWQFS-DTNGSLIDQLGIRHETGVALRATFIFD-PQNIIQHITV 145 (181)
Q Consensus 82 s~d-~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~gv~~~~g~~~p~~~liD-~~g~i~~~~~ 145 (181)
+.| +.+..++|++++ .-..+++.. |.+..+++.|++. ..|+++||| ++|+|++++.
T Consensus 69 ~~d~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 69 SWDESAEDFKDYYAKM---PWLALPFEDRKGMEFLTTGFDVK-----SIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp ECCSSHHHHHHHHTTC---SSEECCTTCHHHHHHHHHHTTCC-----SSSEEEEEETTTCCEEESCH
T ss_pred eCCCCHHHHHHHHHhC---CccccccCchHHHHHHHHHcCCC-----CCCEEEEEECCCCcEEeccc
Confidence 998 467778888765 123555555 5668999999987 678999999 9999998773
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=151.19 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=107.5
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC------CHHHHHHHHHHcC
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD------NEFVKLAWRRENS 97 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d------~~~~~~~~~~~~~ 97 (181)
|.+| +++++++++||++||+|| ++||++|+.+++.|++++++|+..++.+|+|+.| +.+...+|..++
T Consensus 25 ~~~g----~~~~~~~~~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~- 98 (164)
T 2h30_A 25 TADN----RPASVYLKKDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGL- 98 (164)
T ss_dssp ETTS----SBGGGGCCTTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTS-
T ss_pred CCCC----CEeeHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhC-
Confidence 8899 999999999999999999 9999999999999999999999899999999974 345666666654
Q ss_pred CCcccc-eeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 98 NLYKLN-HWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 98 ~~~~~~-~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+++ +++..|.+.++++.|++. ..|++||||++|++++.+.+. ...+++.+.|+++..
T Consensus 99 ---~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~g~----~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 99 ---NYPKLPVVTDNGGTIAQNLNIS-----VYPSWALIGKDGDVQRIVKGS----INEAQALALIRNPNA 156 (164)
T ss_dssp ---CCTTSCEEECTTCHHHHHTTCC-----SSSEEEEECTTSCEEEEEESC----CCHHHHHHHHHCTTC
T ss_pred ---CCCcceEEEcCchHHHHHcCCC-----ccceEEEECCCCcEEEEEcCC----CCHHHHHHHHHHHHH
Confidence 666 889999999999999987 678999999999999988532 356788888877654
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-23 Score=147.56 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=107.2
Q ss_pred CccCccCCCcEEecccCCCCCCCCCc----ccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENN----VSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G----~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~ 77 (181)
+.+|+.+|+|+++ +.+| ....+.+++++++||++||+|| ++||+.|..+++.|++++++ .++.
T Consensus 8 ~~~g~~~p~f~l~---------~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~---~~v~ 74 (156)
T 1kng_A 8 ALIGRPAPQTALP---------PLEGLQADNVQVPGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQ 74 (156)
T ss_dssp ----CBCCCCCBC---------CCTTCEETTEECCCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSE
T ss_pred HHhCCCCCCceee---------eccCcccccccCceechHHhCCCEEEEEEE-cccCHhHHHHHHHHHHHHhc---CCeE
Confidence 5689999999999 4443 0011689999999999999998 78999999999999998876 4699
Q ss_pred EEEEecC-CHHHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 78 LLGGSSD-NEFVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 78 vi~Is~d-~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+++|+.+ +.+..++|++++ +++|+ +..|.+..+++.|++. ..|++||||++|++++.+.+. ...+
T Consensus 75 ~v~v~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~~id~~G~i~~~~~g~----~~~~ 141 (156)
T 1kng_A 75 LVGINYKDAADNARRFLGRY----GNPFGRVGVDANGRASIEWGVY-----GVPETFVVGREGTIVYKLVGP----ITPD 141 (156)
T ss_dssp EEEEEESCCHHHHHHHHHHH----CCCCSEEEEETTSHHHHHTTCC-----SSCEEEEECTTSBEEEEEESC----CCHH
T ss_pred EEEEECCCCHHHHHHHHHHc----CCCCceeeeCchhHHHHhcCcC-----ccCeEEEEcCCCCEEEEEeCC----CCHH
Confidence 9999975 577888999987 88999 8889999999999987 678999999999999988532 2334
Q ss_pred HHHHHHHh
Q psy2878 156 ETLRILDA 163 (181)
Q Consensus 156 ~ll~~l~~ 163 (181)
++.+.|++
T Consensus 142 ~l~~~l~~ 149 (156)
T 1kng_A 142 NLRSVLLP 149 (156)
T ss_dssp HHHHTHHH
T ss_pred HHHHHHHH
Confidence 55544443
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=144.69 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=101.1
Q ss_pred CCccCccCCC-cEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEE
Q psy2878 1 MKTIGQSLSS-YRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAIL 78 (181)
Q Consensus 1 ~l~~G~~~P~-f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~v 78 (181)
|...|+.+|+ |++. |.+| .+++++++||++||+|| ++||++|+.+++.|+++++++++ .++.+
T Consensus 1 m~~~~~~~P~~f~l~---------~~~g-----~~~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~v 65 (146)
T 1o8x_A 1 MSGLDKYLPGIEKLR---------RGDG-----EVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEV 65 (146)
T ss_dssp --CGGGTSTTCCEEE---------ETTE-----EEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEE
T ss_pred CcchHhhCCCceEEE---------cCCC-----CCcHHHhCCCEEEEEEE-ccCCHHHHHHHHHHHHHHHHhhhcCCeEE
Confidence 5568999999 9999 7775 68999999999999998 78999999999999999999984 68999
Q ss_pred EEEecCC-HHHHHHHHHHcCCCcccceeEEE-cCCchHHHHhCCCCCCCcceeeEEEEc-CCCcEEEEE
Q psy2878 79 LGGSSDN-EFVKLAWRRENSNLYKLNHWQFS-DTNGSLIDQLGIRHETGVALRATFIFD-PQNIIQHIT 144 (181)
Q Consensus 79 i~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~gv~~~~g~~~p~~~liD-~~g~i~~~~ 144 (181)
++|+.|. .+..++|++++ .-..+++.. |.+.++++.|++. ..|+++||| ++|+|++++
T Consensus 66 v~v~~d~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~v~-----~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 66 VFCTWDEEEDGFAGYFAKM---PWLAVPFAQSEAVQKLSKHFNVE-----SIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp EEEECCCSHHHHHHHHTTC---SSEECCGGGHHHHHHHHHHTTCC-----SSSEEEEEETTTCCEEESC
T ss_pred EEEeCCCCHHHHHHHHHHC---CceeeccchhhHHHHHHHHhCCC-----CCCEEEEEECCCCeEEEec
Confidence 9999984 66777777765 223455554 6678999999987 578999999 999999877
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-23 Score=151.45 Aligned_cols=122 Identities=13% Similarity=0.133 Sum_probs=100.5
Q ss_pred CCccCccCCCc-EEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEE
Q psy2878 1 MKTIGQSLSSY-RVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAIL 78 (181)
Q Consensus 1 ~l~~G~~~P~f-~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~v 78 (181)
|..+|+.+|+| ++. |.+| +++|++++||++||+|| ++||++|+.+++.|++++++|++ .++.|
T Consensus 21 ~~~vG~~~P~f~~l~---------~~~g-----~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~v~v 85 (165)
T 3s9f_A 21 MSGVAKHLGEALKLR---------KQAD-----TADMDSLSGKTVFFYFS-ASWCPPCRGFTPQLVEFYEKHHDSKNFEI 85 (165)
T ss_dssp -CHHHHHHHHTSCEE---------ETTE-----EECSGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEE
T ss_pred hhhhcccCCcceeee---------cCCC-----cccHHHcCCCEEEEEEE-CCcChhHHHHHHHHHHHHHHhccCCCeEE
Confidence 45689999999 898 6775 78999999999999999 89999999999999999999987 68999
Q ss_pred EEEecCC-HHHHHHHHHHcCCCcccceeEEEcCC-chHHHHhCCCCCCCcceeeEEEEcCC-CcEEEEEe
Q psy2878 79 LGGSSDN-EFVKLAWRRENSNLYKLNHWQFSDTN-GSLIDQLGIRHETGVALRATFIFDPQ-NIIQHITV 145 (181)
Q Consensus 79 i~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~gv~~~~g~~~p~~~liD~~-g~i~~~~~ 145 (181)
++|+.|. .+..++|.+++ .-..+++..+.. .++++.|++. ..|++||||++ |+|+++..
T Consensus 86 v~v~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~-----~~Pt~~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 86 ILASWDEEEDDFNAYYAKM---PWLSIPFANRNIVEALTKKYSVE-----SIPTLIGLNADTGDTVTTRA 147 (165)
T ss_dssp EEEECCCSHHHHHHHHTTC---SSEECCTTCHHHHHHHHHHTTCC-----SSSEEEEEETTTCCEEESCH
T ss_pred EEEecCCCHHHHHHHHHhC---CCcccccCchhHHHHHHHHcCCC-----CCCEEEEEeCCCCEEEeccc
Confidence 9999886 46667777754 123444444333 7999999987 67899999998 99998873
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=143.38 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=100.8
Q ss_pred CCccCccCCCc-EEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH-hcCcEE
Q psy2878 1 MKTIGQSLSSY-RVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN-ERNAIL 78 (181)
Q Consensus 1 ~l~~G~~~P~f-~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~-~~~~~v 78 (181)
|..+|+.+|+| ++. |.+| .+++++++||++||+|| ++||+.|+.+++.|++++++++ +.++.+
T Consensus 1 m~~~g~~~p~~~~l~---------~~~g-----~~~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~v 65 (144)
T 1o73_A 1 MSGLAKYLPGATNLL---------SKSG-----EVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEV 65 (144)
T ss_dssp CCGGGGTSCTTCCBB---------CTTS-----CBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEE
T ss_pred CcchhhhCccceEee---------cCCC-----cCcHHHhCCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 67789999997 998 7776 68999999999999998 8899999999999999999998 468999
Q ss_pred EEEecCC-HHHHHHHHHHcCCCcccceeEEE-cCCchHHHHhCCCCCCCcceeeEEEEc-CCCcEEEEE
Q psy2878 79 LGGSSDN-EFVKLAWRRENSNLYKLNHWQFS-DTNGSLIDQLGIRHETGVALRATFIFD-PQNIIQHIT 144 (181)
Q Consensus 79 i~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~gv~~~~g~~~p~~~liD-~~g~i~~~~ 144 (181)
++|+.|. .+..++|.+++ ....+++.. |.+..+++.|++. ..|+++||| ++|+|++++
T Consensus 66 v~i~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~-----~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 66 VLISWDENESDFHDYYGKM---PWLALPFDQRSTVSELGKTFGVE-----SIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp EEEECCSSHHHHHHHHTTC---SSEECCTTCHHHHHHHHHHHTCC-----SSSEEEEEETTTCCEEESC
T ss_pred EEEeCCCCHHHHHHHHHhC---CceEeeccchhHHHHHHHHcCCC-----CCCEEEEEECCCCeEEecc
Confidence 9999985 55667777664 123444443 5567899999987 678999999 899999876
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-23 Score=147.11 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=99.2
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCC-CCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHh--cCcEEEEE
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESS-FPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNE--RNAILLGG 81 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~--~~~~vi~I 81 (181)
+.+|+|++. |.+| +++++++ ++|| ++||+|| ++||++|+.+++.|+++++++++ .++.+++|
T Consensus 2 ~~~p~~~l~---------~~~g----~~~~l~~~~~gk~~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v 67 (143)
T 2lus_A 2 EFIQGIKLV---------KKNR----CEVNANEALKDKDIIGFYFS-AHWCPPCRGFTPILADMYSELVDDSAPFEIIFV 67 (143)
Confidence 457889888 8999 9999999 9999 9999998 78999999999999999999954 58999999
Q ss_pred ecCC-HHHHHHHHHHcCCCcccceeE---EEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 82 SSDN-EFVKLAWRRENSNLYKLNHWQ---FSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 82 s~d~-~~~~~~~~~~~~~~~~~~~~~---~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+.|. .+..++|++++ +++|+. ..|.+.++++.|++. ..|+++|||++|+|++++.
T Consensus 68 ~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~ 126 (143)
T 2lus_A 68 SSDRSEDDMFQYMMES----HGDWLAIPYRSGPASNVTAKYGIT-----GIPALVIVKKDGTLISMNG 126 (143)
Confidence 9884 56777777776 666554 456667899999986 6789999999999999873
|
| >4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=117.59 Aligned_cols=156 Identities=14% Similarity=0.199 Sum_probs=114.5
Q ss_pred CccCccCCC--cEEecccCCCCCCCCC--cccceeeeecCCC--CCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHH-Hh
Q psy2878 2 KTIGQSLSS--YRVIGVKPGFNLPEEN--NVSAFKVITESSF--PGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDF-NE 73 (181)
Q Consensus 2 l~~G~~~P~--f~l~~~~~~~~~~d~~--G~~~~~~~~l~~~--~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~-~~ 73 (181)
..+|+++|. +++.=+. |...+.+ .-...+++++++. +||.+||+++++.++|.|.. ++|.+.+.++++ ++
T Consensus 26 ~~v~~~~P~gdv~f~yip--~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~ 103 (199)
T 4h86_A 26 DLVNKKFPAGDYKFQYIA--ISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKE 103 (199)
T ss_dssp TTTTSBCCCTTCEEEECC--CCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCceEEEec--CCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHh
Confidence 458899994 4443110 0000111 1113377888875 68999999999999999976 699999999876 67
Q ss_pred cCc-EEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC-CC--cceeeEEEEcCCCcEEEEEeccC
Q psy2878 74 RNA-ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE-TG--VALRATFIFDPQNIIQHITVNNL 148 (181)
Q Consensus 74 ~~~-~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~-~g--~~~p~~~liD~~g~i~~~~~~~~ 148 (181)
+|+ +|++||+|++..+.+|.+.........+++++|+++++++.+|+. .. .+ .++|..+||| ||+|.+.++.+.
T Consensus 104 kGvd~I~ciSVND~FVm~AW~k~~~~~~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~vE~~ 182 (199)
T 4h86_A 104 KEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAAKETN 182 (199)
T ss_dssp SCCCEEEEEESSCHHHHHHHHHHTTCCCCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEEECSS
T ss_pred cCCcEEEEEEcCCHHHHHHHHHHhcccccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEEEeCC
Confidence 887 799999999999999999874444567999999999999999987 22 22 3678899999 999999997433
Q ss_pred CC----CCCHHHHHHH
Q psy2878 149 NV----GRNPIETLRI 160 (181)
Q Consensus 149 ~~----~~~~~~ll~~ 160 (181)
+. -..++.+|+.
T Consensus 183 pg~~~~vS~ae~vL~~ 198 (199)
T 4h86_A 183 PGTDVTVSSVESVLAH 198 (199)
T ss_dssp TTTCCSTTSHHHHHTT
T ss_pred CCCCCcccCHHHHHhc
Confidence 21 1346666643
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=105.86 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=83.7
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccc
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLN 103 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~ 103 (181)
+.+| ........+||+++|+|| +.||+.|..+.+.+.++.+++. .++.++.|+.+
T Consensus 13 ~~~~----~~~~~~~~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~------------------- 67 (126)
T 2l57_A 13 SINV----VENLEEAKEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE------------------- 67 (126)
T ss_dssp CCSE----ESSTTTCCSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT-------------------
T ss_pred ccch----hHHHHHHhCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC-------------------
Confidence 6666 555566667899999998 8899999999999999999887 57999999955
Q ss_pred eeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccC
Q psy2878 104 HWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 104 ~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~ 167 (181)
.|.+.++++.|++. ..|+++++|++|++++.+.+. ...+++.+.|+++...
T Consensus 68 ----~d~~~~~~~~~~v~-----~~Pt~~~~~~~G~~~~~~~G~----~~~~~l~~~l~~~~~~ 118 (126)
T 2l57_A 68 ----EEKNIDLAYKYDAN-----IVPTTVFLDKEGNKFYVHQGL----MRKNNIETILNSLGVK 118 (126)
T ss_dssp ----SSHHHHHHHHTTCC-----SSSEEEEECTTCCEEEEEESC----CCHHHHHHHHHHHCCC
T ss_pred ----CCchHHHHHHcCCc-----ceeEEEEECCCCCEEEEecCC----CCHHHHHHHHHHHhcc
Confidence 12234677888886 578999999999999887532 4567888888877643
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-16 Score=112.03 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=86.0
Q ss_pred ccCccCCCcE-EecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEE
Q psy2878 3 TIGQSLSSYR-VIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAIL 78 (181)
Q Consensus 3 ~~G~~~P~f~-l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~v 78 (181)
..|..+|+|. +. +.++ ....+++++||++||+|| ++||++|+.+.+.+ .++.+++. ++.+
T Consensus 5 ~~~~~~~~f~~~~---------~~~~----~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~ 68 (134)
T 2fwh_A 5 AQTQTHLNFTQIK---------TVDE----LNQALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVL 68 (134)
T ss_dssp -----CCCCEECC---------SHHH----HHHHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEE
T ss_pred cccccCCCcEEec---------CHHH----HHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEE
Confidence 4677888887 44 5555 567777778999999999 89999999988888 88888775 5999
Q ss_pred EEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEE--EEEeccCCCCCCHHH
Q psy2878 79 LGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQ--HITVNNLNVGRNPIE 156 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~--~~~~~~~~~~~~~~~ 156 (181)
+.|+.+... |.+.++++.|++. ..|+++++|++|+++ +++.+ ....++
T Consensus 69 ~~vd~~~~~---------------------~~~~~l~~~~~v~-----~~Pt~~~~d~~G~~v~~~~~~G----~~~~~~ 118 (134)
T 2fwh_A 69 LQANVTAND---------------------AQDVALLKHLNVL-----GLPTILFFDGQGQEHPQARVTG----FMDAET 118 (134)
T ss_dssp EEEECTTCC---------------------HHHHHHHHHTTCC-----SSSEEEEECTTSCBCGGGCBCS----CCCHHH
T ss_pred EEEeCCCCc---------------------chHHHHHHHcCCC-----CCCEEEEECCCCCEeeeeeeee----ccCHHH
Confidence 999887521 2245678888886 578999999999998 45532 135678
Q ss_pred HHHHHHhhcc
Q psy2878 157 TLRILDAIQT 166 (181)
Q Consensus 157 ll~~l~~l~~ 166 (181)
+.+.|++++.
T Consensus 119 l~~~l~~~~~ 128 (134)
T 2fwh_A 119 FSAHLRDRQP 128 (134)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHhcCc
Confidence 8888887764
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-15 Score=109.50 Aligned_cols=111 Identities=8% Similarity=-0.008 Sum_probs=84.9
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
+.+++++.+||+++|+||.++||++|+.+++.| .++.+.+. .++.++.|+.+... +++++ +.
T Consensus 38 ~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~-------------~~~~~-~~ 102 (154)
T 2ju5_A 38 EALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN-------------HQPEE-QR 102 (154)
T ss_dssp HHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC-------------CCCHH-HH
T ss_pred HHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc-------------CCChh-hH
Confidence 677778888999999998788999999999999 66655443 46888888876532 12333 24
Q ss_pred cCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 109 DTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 109 D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
|.+.++++.|++. ..|+++|+|++|++++.. +.. ....+++++.|+++.
T Consensus 103 ~~~~~l~~~~~v~-----~~Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 103 QKNQELKAQYKVT-----GFPELVFIDAEGKQLARM-GFE--PGGGAAYVSKVKSAL 151 (154)
T ss_dssp HHHHHHHHHTTCC-----SSSEEEEECTTCCEEEEE-CCC--TTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCC-----CCCEEEEEcCCCCEEEEe-cCC--CCCHHHHHHHHHHHH
Confidence 5567899999987 578999999999999987 432 346788888887664
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=95.55 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=80.9
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccc
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLN 103 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~ 103 (181)
+.+| ...++++++||++||+|| +.||++|....+.+.++.+++.. ++.++.|..|.
T Consensus 38 ~~~~----~~~~l~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------------ 93 (141)
T 3hxs_A 38 DYEN----HSKEWKYLGDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDK------------------ 93 (141)
T ss_dssp CCSS----CCCCCCCCCSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTT------------------
T ss_pred cccc----chhHHHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCC------------------
Confidence 5667 788888889999999999 88999999999999999998875 48888888654
Q ss_pred eeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 104 HWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 104 ~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+.++++.|++. ..|+++++|++|+++ .+.+. ...+++.+.|+++.
T Consensus 94 -------~~~~~~~~~v~-----~~Pt~~~~~~~g~~~-~~~G~----~~~~~l~~~l~~~l 138 (141)
T 3hxs_A 94 -------EPELARDFGIQ-----SIPTIWFVPMKGEPQ-VNMGA----LSKEQLKGYIDKVL 138 (141)
T ss_dssp -------CHHHHHHTTCC-----SSSEEEEECSSSCCE-EEESC----CCHHHHHHHHHHTT
T ss_pred -------CHHHHHHcCCC-----CcCEEEEEeCCCCEE-EEeCC----CCHHHHHHHHHHHH
Confidence 34577888887 678999999999987 44222 35677888777654
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-13 Score=92.89 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=77.8
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHH--HHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYN--KLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~--~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+..+...||+++|+|| ++||++|+.+.+.|. ++.+++.+ ++.++.|+.+. .|.+
T Consensus 22 ~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~----------------------~~~~ 77 (133)
T 3fk8_A 22 LAAGKRTHKPTLLVFG-ANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN----------------------FDRN 77 (133)
T ss_dssp HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT----------------------TTSS
T ss_pred HHHHHhcCCcEEEEEc-CCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc----------------------ccch
Confidence 3333346899999998 999999999999999 99988875 59999998864 2345
Q ss_pred chHHHHhCC---CCCCCcceeeEEEEcCCCcEEEEEeccCCC---CCCHHHHHHHHHhhc
Q psy2878 112 GSLIDQLGI---RHETGVALRATFIFDPQNIIQHITVNNLNV---GRNPIETLRILDAIQ 165 (181)
Q Consensus 112 ~~~~~~~gv---~~~~g~~~p~~~liD~~g~i~~~~~~~~~~---~~~~~~ll~~l~~l~ 165 (181)
.++++.|++ . ..|+++++|++|++++.+.++... ....+++.+.|+++.
T Consensus 78 ~~l~~~~~v~~~~-----~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 78 LELSQAYGDPIQD-----GIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp HHHHHHTTCGGGG-----CSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCccCC-----ccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 677888887 5 568999999999999998542111 235667777776653
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-13 Score=91.98 Aligned_cols=95 Identities=16% Similarity=0.331 Sum_probs=76.2
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+.++....+||+++|.|| ++||++|+.+.+.+.++.+++++ ++.++.|+.|. +
T Consensus 33 ~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-------------------------~ 85 (128)
T 3ul3_B 33 NIINGVNMKNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDK-------------------------N 85 (128)
T ss_dssp SSSSBTTSCCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGG-------------------------C
T ss_pred cHHHHHHccCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC-------------------------C
Confidence 567777788999999998 88999999999999999999974 58888888543 2
Q ss_pred chHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 112 GSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 112 ~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
.++++.|++. ..|+++++ ++|+++.++.+. ...+++.+.|++
T Consensus 86 ~~l~~~~~v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~ 127 (128)
T 3ul3_B 86 ESLARKFSVK-----SLPTIILL-KNKTMLARKDHF----VSSNDLIALIKK 127 (128)
T ss_dssp HHHHHHTTCC-----SSSEEEEE-ETTEEEEEESSC----CCHHHHHHHHTT
T ss_pred HHHHHHcCCC-----CcCEEEEE-ECCEEEEEecCC----CCHHHHHHHHHh
Confidence 3678889987 56799999 699999887432 456777777754
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-15 Score=110.70 Aligned_cols=122 Identities=12% Similarity=-0.027 Sum_probs=73.5
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEc
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD 109 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D 109 (181)
.+.++..+||+++|+|| ++||++|+.+.+.+ .++.+.+++ ++.++.|+.|....+..............+..+.|
T Consensus 39 ~~~~a~~~gk~vlv~F~-A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (172)
T 3f9u_A 39 GMEYARQHNKPVMLDFT-GYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGD 116 (172)
T ss_dssp HHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHcCCeEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhhhcchhhhhhhhhh
Confidence 45555567999999999 88999999864443 555555554 69999999876331100000000000111222222
Q ss_pred CCchH-HHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 110 TNGSL-IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 110 ~~~~~-~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
....+ ++.|++. ..|+++|+|++|+++..+.+. ..+.+++++.|+++
T Consensus 117 ~~~~~~~~~~~v~-----~~Pt~~lid~~G~~~~~~~G~---~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 117 KWSYLQRVKFGAN-----AQPFYVLIDNEGNPLNKSYAY---DEDISKYINFLQTG 164 (172)
T ss_dssp HHHHHHHHHHSCC-----CSSEEEEECTTSCBSSCCBCS---CCCHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCC-----CcceEEEECCCCCEEeeccCC---CCCHHHHHHHHHHH
Confidence 22223 5889987 568999999999999888422 22356666655543
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-13 Score=92.25 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=76.7
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
+.+.+++.+||+++|.|| +.||+.|..+.+.+ .++.+.+. .++.++.|..+.
T Consensus 18 ~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------- 72 (130)
T 2kuc_A 18 EALKRAEVEDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDMEK----------------------- 72 (130)
T ss_dssp HHHHHHHHHSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSSS-----------------------
T ss_pred HHHHHHHhcCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecCC-----------------------
Confidence 445666667899999998 88999999999988 55555444 357777777664
Q ss_pred cCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccCC
Q psy2878 109 DTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGK 168 (181)
Q Consensus 109 D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~ 168 (181)
|.+..+++.|++. ..|+++++|++|++++.+.+. ...+++.+.|+++..+.
T Consensus 73 ~~~~~~~~~~~v~-----~~Pt~~~~d~~G~~~~~~~G~----~~~~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 73 GEGVELRKKYGVH-----AYPTLLFINSSGEVVYRLVGA----EDAPELLKKVKLGVESE 123 (130)
T ss_dssp TTHHHHHHHTTCC-----SSCEEEEECTTSCEEEEEESC----CCHHHHHHHHHHHHSCC
T ss_pred cchHHHHHHcCCC-----CCCEEEEECCCCcEEEEecCC----CCHHHHHHHHHHHHHhc
Confidence 2345778888886 578999999999999887532 35678888888776543
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.38 E-value=8.1e-12 Score=84.38 Aligned_cols=90 Identities=7% Similarity=0.093 Sum_probs=73.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++|+++|+|| +.||+.|....+.+.++.+++++ ++.++.|+.|. +.++++.|+
T Consensus 16 ~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 68 (112)
T 2voc_A 16 SEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE-------------------------NQETAGKYG 68 (112)
T ss_dssp SSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT-------------------------CCSHHHHTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC-------------------------CHHHHHHcC
Confidence 6788999998 88999999999999999999875 69999998764 346888899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.++++..
T Consensus 69 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~~~ 105 (112)
T 2voc_A 69 VM-----SIPTLLVL-KDGEVVETSVGF----KPKEALQELVNKHLL 105 (112)
T ss_dssp CC-----SBSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTTSC
T ss_pred CC-----cccEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHHHH
Confidence 87 67899999 899999888532 356778888876654
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=85.55 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=70.0
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
+.+||+++|+|| ++||++|....+.|.++.+++. ++.++.|..+. .+.++++.
T Consensus 21 ~~~~~~vlv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~------------------------~~~~~~~~ 73 (111)
T 2pu9_C 21 AAGDKPVVLDMF-TQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ------------------------ENKTLAKE 73 (111)
T ss_dssp TCTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS------------------------TTHHHHHH
T ss_pred hcCCCEEEEEEE-CCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc------------------------chHHHHHH
Confidence 346889999998 8899999999999999998876 58899888873 14577888
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
|++. ..|+ ++++++|+++..+.+. ..+++.+.|+++
T Consensus 74 ~~v~-----~~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~l~~~ 109 (111)
T 2pu9_C 74 LGIR-----VVPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA 109 (111)
T ss_dssp HCCS-----BSSE-EEEESSSSEEEEEESS-----CHHHHHHHHHHH
T ss_pred cCCC-----eeeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence 9987 5677 7778999999887422 267777777665
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-12 Score=89.20 Aligned_cols=97 Identities=7% Similarity=0.086 Sum_probs=73.3
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+.+......+|+++|.|| +.||+.|....+.+.++.+++.. ++.++.|+.+. +
T Consensus 46 ~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~-------------------------~ 98 (148)
T 3p2a_A 46 ETLDKLLQDDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEA-------------------------E 98 (148)
T ss_dssp TTHHHHTTCSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------------------------C
T ss_pred HHHHHHHhcCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcC-------------------------C
Confidence 444333346789999998 88999999999999999998865 48888888763 3
Q ss_pred chHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 112 GSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 112 ~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.++++.|++. ..|+++++ ++|+++..+.+. ...+++.+.|+++.
T Consensus 99 ~~l~~~~~v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l 142 (148)
T 3p2a_A 99 PALSTRFRIR-----SIPTIMLY-RNGKMIDMLNGA----VPKAPFDNWLDEQL 142 (148)
T ss_dssp HHHHHHTTCC-----SSSEEEEE-ETTEEEEEESSC----CCHHHHHHHHHHHH
T ss_pred HHHHHHCCCC-----ccCEEEEE-ECCeEEEEEeCC----CCHHHHHHHHHHHh
Confidence 4677888887 56788887 599999877432 45677777776654
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=83.52 Aligned_cols=89 Identities=11% Similarity=0.163 Sum_probs=68.6
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++..+|++||.|| ++||++|....|.+.++.+++. ++.++.|..|. +.++++
T Consensus 16 ~~~~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~-------------------------~~~l~~ 67 (105)
T 3zzx_A 16 NEAGNKLVVIDFY-ATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVDE-------------------------CEDIAQ 67 (105)
T ss_dssp HHTTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETTT-------------------------CHHHHH
T ss_pred HhcCCCEEEEEEE-CCCCCCccCCCcchhhhhhccC--CeEEEEEeccc-------------------------CHHHHH
Confidence 3445789999998 8999999999999999887775 56677666542 356788
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.|++. ..|+.+++ ++|+++.++.+ .+.+++.+.|++.
T Consensus 68 ~~~V~-----~~PT~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k~ 104 (105)
T 3zzx_A 68 DNQIA-----CMPTFLFM-KNGQKLDSLSG-----ANYDKLLELVEKN 104 (105)
T ss_dssp HTTCC-----BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred HcCCC-----eecEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHhc
Confidence 89987 56776666 79999998853 3568888888764
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=86.27 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=69.2
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.++|+++|.|| +.||++|+...+.|.++.+++.+ +.++.|..|. +.++++.|
T Consensus 29 ~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~-------------------------~~~l~~~~ 80 (116)
T 3qfa_C 29 AGDKLVVVDFS-ATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDD-------------------------CQDVASEC 80 (116)
T ss_dssp HTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTT-------------------------THHHHHHT
T ss_pred cCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC-------------------------CHHHHHHc
Confidence 36899999998 88999999999999999888864 8888888753 34677888
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
++. ..|+++++ ++|+++..+.+ ...+++.+.|+++
T Consensus 81 ~v~-----~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~ 115 (116)
T 3qfa_C 81 EVK-----SMPTFQFF-KKGQKVGEFSG-----ANKEKLEATINEL 115 (116)
T ss_dssp TCC-----SSSEEEEE-SSSSEEEEEES-----CCHHHHHHHHHHH
T ss_pred CCc-----cccEEEEE-eCCeEEEEEcC-----CCHHHHHHHHHHh
Confidence 887 56787777 79999988742 1567777777654
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=86.64 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=69.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| +.||+.|....+.|.++.+++.+ ++.++.|..+. +.++++.|+
T Consensus 37 ~~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 89 (136)
T 2l5l_A 37 GDKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEK-------------------------EQELAGAFG 89 (136)
T ss_dssp CSSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCC-------------------------CHHHHHHcC
Confidence 3588999988 88999999999999999988875 48888888753 246777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+++++|++|+++ .+.+ ....+++.+.|+++.
T Consensus 90 v~-----~~Pt~~~~~~~G~~~-~~~G----~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 90 IR-----SIPSILFIPMEGKPE-MAQG----AMPKASFKKAIDEFL 125 (136)
T ss_dssp CC-----SSCEEEEECSSSCCE-EEES----CCCHHHHHHHHHHHH
T ss_pred CC-----CCCEEEEECCCCcEE-EEeC----CCCHHHHHHHHHHHh
Confidence 86 578999999999998 4422 235677777777664
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-11 Score=80.31 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|+|| +.||+.|....+.+.++.++++++ +.++.|+.+. +.++++.|+
T Consensus 24 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~-------------------------~~~~~~~~~ 76 (115)
T 1thx_A 24 AEQPVLVYFW-ASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP-------------------------NPTTVKKYK 76 (115)
T ss_dssp CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTT-------------------------CHHHHHHTT
T ss_pred CCceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEcCC-------------------------CHHHHHHcC
Confidence 5788989988 889999999999999999888754 8999998764 235778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++.
T Consensus 77 v~-----~~Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~l 112 (115)
T 1thx_A 77 VE-----GVPALRLV-KGEQILDSTEGV----ISKDKLLSFLDTHL 112 (115)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHH
T ss_pred CC-----ceeEEEEE-cCCEEEEEecCC----CCHHHHHHHHHHHh
Confidence 86 57899999 899999887432 34677777777653
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=83.93 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=69.4
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.+||+++|.|| ++||++|+...|.+.++.+++. ++.++.|..+. .+.++++.|
T Consensus 35 ~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~------------------------~~~~~~~~~ 87 (124)
T 1faa_A 35 AGDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ------------------------ENKTLAKEL 87 (124)
T ss_dssp TTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS------------------------TTHHHHHHH
T ss_pred cCCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc------------------------chHHHHHHc
Confidence 36789999998 8999999999999999988876 58888888763 135677889
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++. ..|+ ++++++|+++..+.+. ..+++.+.|+++.
T Consensus 88 ~v~-----~~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~i~~~~ 123 (124)
T 1faa_A 88 GIR-----VVPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAAR 123 (124)
T ss_dssp CCS-----SSSE-EEEEETTEEEEEEESS-----CHHHHHHHHHHHT
T ss_pred CCC-----eeeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHhh
Confidence 987 5567 6666899999887422 2677888777653
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=79.67 Aligned_cols=88 Identities=9% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|+|| +.||+.|....+.+.++.+++.. ++.++.|+.+. +.++++.|+
T Consensus 19 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 71 (107)
T 2i4a_A 19 ASGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD-------------------------NPETPNAYQ 71 (107)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT-------------------------CCHHHHHTT
T ss_pred CCCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC-------------------------CHHHHHhcC
Confidence 5688989888 88999999999999999999875 68888888663 246778898
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 72 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 72 VR-----SIPTLMLV-RDGKVIDKKVGA----LPKSQLKAWVESA 106 (107)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHT
T ss_pred CC-----ccCEEEEE-eCCEEEEEecCC----CCHHHHHHHHHhc
Confidence 86 57799999 899999877432 3567787777764
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=80.01 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=70.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++++++|+|| +.||+.|....+.+.++.+++.+. +.++.|+.+. +.++++.|+
T Consensus 18 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------------------------~~~~~~~~~ 70 (106)
T 3die_A 18 ESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE-------------------------NPSTAAKYE 70 (106)
T ss_dssp CSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------------------------CHHHHHHTT
T ss_pred cCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc-------------------------CHHHHHhCC
Confidence 6789999998 889999999999999999998754 8888888753 345677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.++++ +|+++..+.+. ...+++.+.|+++
T Consensus 71 v~-----~~Pt~~~~~-~G~~~~~~~g~----~~~~~l~~~l~~~ 105 (106)
T 3die_A 71 VM-----SIPTLIVFK-DGQPVDKVVGF----QPKENLAEVLDKH 105 (106)
T ss_dssp CC-----SBSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHTT
T ss_pred Cc-----ccCEEEEEe-CCeEEEEEeCC----CCHHHHHHHHHHh
Confidence 86 567888885 99999887432 4567788777654
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=80.99 Aligned_cols=88 Identities=10% Similarity=0.115 Sum_probs=68.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.||+++|+|| ++||+.|....+.+.++.+++.+ ++.++.|+.+. +.++++.|+
T Consensus 16 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~ 68 (105)
T 1nsw_A 16 GDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE-------------------------NPETTSQFG 68 (105)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcC-------------------------CHHHHHHcC
Confidence 4688989888 88999999999999999988865 48888888754 245777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 69 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 103 (105)
T 1nsw_A 69 IM-----SIPTLILF-KGGRPVKQLIGY----QPKEQLEAQLADV 103 (105)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTTTT
T ss_pred Cc-----cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHHH
Confidence 86 56899999 899999887532 3456677776654
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-11 Score=80.30 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=66.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+||+++|.|| ++||++|....+.+.++.+++...++.++.|+.+. +.++++.|+
T Consensus 20 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~~~ 73 (112)
T 3d6i_A 20 GDKLIVLYFH-TSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE-------------------------NSEISELFE 73 (112)
T ss_dssp TTCCEEEEEE-CCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc-------------------------CHHHHHHcC
Confidence 4788999998 88999999999999999988765679999998874 236778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ..+++.+.|+++
T Consensus 74 v~-----~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 107 (112)
T 3d6i_A 74 IS-----AVPYFIII-HKGTILKELSGA-----DPKEYVSLLEDC 107 (112)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEECSC-----CHHHHHHHHHHH
T ss_pred CC-----cccEEEEE-ECCEEEEEecCC-----CHHHHHHHHHHH
Confidence 86 56787777 699999888421 234566666554
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-11 Score=82.13 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=69.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.||++||+|| +.||+.|....+.|.++.+++.. ++.++.|+.+. +.++++.|+
T Consensus 30 ~~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 82 (119)
T 1w4v_A 30 SETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDD-------------------------HTDLAIEYE 82 (119)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTT-------------------------THHHHHHTT
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCC-------------------------CHHHHHHcC
Confidence 4788999988 88999999999999999988865 58999988763 346778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 83 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 83 VS-----AVPTVLAM-KNGDVVDKFVGI----KDEDQLEAFLKKL 117 (119)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred CC-----cccEEEEE-eCCcEEEEEcCC----CCHHHHHHHHHHH
Confidence 87 56788888 899999877432 2466777777654
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.5e-11 Score=79.11 Aligned_cols=88 Identities=8% Similarity=0.185 Sum_probs=68.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| ++||+.|....+.+.++.+++.. ++.++.|+.+. +.++++.|+
T Consensus 18 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 70 (107)
T 1dby_A 18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE-------------------------SPNVASEYG 70 (107)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------------------------CHHHHHHHT
T ss_pred CCCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCC-------------------------CHHHHHHCC
Confidence 4788999888 88999999999999999988875 48888888754 346778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 71 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 105 (107)
T 1dby_A 71 IR-----SIPTIMVF-KGGKKCETIIGA----VPKATIVQTVEKY 105 (107)
T ss_dssp CC-----SSCEEEEE-SSSSEEEEEESC----CCHHHHHHHHHHH
T ss_pred CC-----cCCEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 86 56787666 799999887532 2456677777654
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-11 Score=80.99 Aligned_cols=88 Identities=10% Similarity=0.208 Sum_probs=67.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.||+++|+|| +.||+.|....+.+.++.+++.. ++.++.|+.+. +.++++.|+
T Consensus 22 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 74 (112)
T 1t00_A 22 NDKPVLVDFW-AAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDE-------------------------NPGTAAKYG 74 (112)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCeEEEEEE-CCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCC-------------------------CHHHHHhCC
Confidence 4688989888 88999999999999999998865 48999988764 245777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++..+.+. ...+++.+.|+++
T Consensus 75 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 109 (112)
T 1t00_A 75 VM-----SIPTLNVY-QGGEVAKTIVGA----KPKAAIVRDLEDF 109 (112)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTHHH
T ss_pred CC-----cccEEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 86 56676666 799999887532 3456777777654
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=83.03 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+||+++|+|| ++||+.|....+.|.++.+++. ++.++.|+.|. +.++++.|+
T Consensus 37 ~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~-------------------------~~~l~~~~~ 88 (124)
T 1xfl_A 37 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE-------------------------LKSVASDWA 88 (124)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------------------------SHHHHHHTT
T ss_pred cCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc-------------------------CHHHHHHcC
Confidence 5889999988 8899999999999999988875 68888888753 346778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+ ...+++.+.|+++
T Consensus 89 v~-----~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~ 122 (124)
T 1xfl_A 89 IQ-----AMPTFMFL-KEGKILDKVVG-----AKKDELQSTIAKH 122 (124)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred CC-----ccCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHh
Confidence 86 56676655 89999988742 2467777777765
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=80.95 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.+||+++|+|| +.||+.|+...+.+.++.+++. ++.++.|..+. +.++++.|
T Consensus 22 ~~~k~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~-------------------------~~~l~~~~ 73 (109)
T 3f3q_A 22 AQDKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDE-------------------------LGDVAQKN 73 (109)
T ss_dssp TSSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------CHHHHHHT
T ss_pred hcCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC-------------------------CHHHHHHc
Confidence 35789999998 8899999999999999998885 48888887652 35677888
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
++. ..|++++++ +|+++.++.+. ..+++.+.|+++
T Consensus 74 ~v~-----~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~ 108 (109)
T 3f3q_A 74 EVS-----AMPTLLLFK-NGKEVAKVVGA-----NPAAIKQAIAAN 108 (109)
T ss_dssp TCC-----SSSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred CCC-----ccCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHhh
Confidence 887 567988887 99999888532 346777777654
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.5e-12 Score=87.42 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=68.5
Q ss_pred ecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 35 TESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
.+++.+||++||.|| ++||++|....+.|.++.+++ ++.++.|..+. +.++
T Consensus 34 ~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~-------------------------~~~l 84 (133)
T 3cxg_A 34 VFSSTQNSSIVIKFG-AVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDI-------------------------HPKL 84 (133)
T ss_dssp HHTC-CCSEEEEEEE-CTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTT-------------------------CHHH
T ss_pred HHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccc-------------------------hHHH
Confidence 345667899999998 889999999999888876655 57777777543 3567
Q ss_pred HHHhCCCCCCCcceeeEEEE-cCCCc--EEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 115 IDQLGIRHETGVALRATFIF-DPQNI--IQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~li-D~~g~--i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++.|++. ..|+++++ |++|+ ++..+.+ ...+++.+.|+++..
T Consensus 85 ~~~~~v~-----~~Pt~~~~~~~~g~g~~~~~~~G-----~~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 85 NDQHNIK-----ALPTFEFYFNLNNEWVLVHTVEG-----ANQNDIEKAFQKYCL 129 (133)
T ss_dssp HHHTTCC-----SSSEEEEEEEETTEEEEEEEEES-----CCHHHHHHHHHHHSE
T ss_pred HHhcCCC-----CCCEEEEEEecCCCeEEEEEEcC-----CCHHHHHHHHHHHHH
Confidence 8889987 56798888 55666 8877742 146788888877643
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-11 Score=79.07 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=70.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++++++|+|| +.||+.|....+.+.++.+++.+ .+.++.|..+. +.++++.|+
T Consensus 20 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 72 (109)
T 3tco_A 20 NNKLVLVDCW-AEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDE-------------------------NQKIADKYS 72 (109)
T ss_dssp HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------------------------CHHHHHHTT
T ss_pred cCCeEEEEEE-CCCCHHHHhhhHHHHHHHHHhCC-CceEEEEcccc-------------------------CHHHHHhcC
Confidence 4788999998 88999999999999999998875 48888887643 346777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 73 i~-----~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~ 107 (109)
T 3tco_A 73 VL-----NIPTTLIF-VNGQLVDSLVGA----VDEDTLESTVNKY 107 (109)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred cc-----cCCEEEEE-cCCcEEEeeecc----CCHHHHHHHHHHH
Confidence 86 57899999 899999887532 3567777777664
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-11 Score=78.99 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=68.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|.|| +.||+.|....+.+.++.+++.. ++.++.|+.+. +.++++.|+
T Consensus 19 ~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 71 (108)
T 2trx_A 19 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ-------------------------NPGTAPKYG 71 (108)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT-------------------------CTTHHHHTT
T ss_pred cCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCC-------------------------CHHHHHHcC
Confidence 4688888888 88999999999999999988865 48888887653 235778899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 72 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 106 (108)
T 2trx_A 72 IR-----GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN 106 (108)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred Cc-----ccCEEEEE-eCCEEEEEEecC----CCHHHHHHHHHHh
Confidence 87 56799999 799999887432 3456777777654
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=86.34 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++.+||+++|+|| ++||++|..+.+.+.++.+++. ++.++.|+.|. +.++++
T Consensus 42 ~~~~~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~-------------------------~~~~~~ 93 (139)
T 3d22_A 42 ASRDGKIVLANFS-ARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE-------------------------LSDFSA 93 (139)
T ss_dssp HHHHTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------SHHHHH
T ss_pred HhhcCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc-------------------------cHHHHH
Confidence 3346899999998 8899999999999999998874 69999998863 346778
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
.|++. ..|+++++ ++|+++..+.+. ..+++.+.|+++..
T Consensus 94 ~~~v~-----~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~~~ 132 (139)
T 3d22_A 94 SWEIK-----ATPTFFFL-RDGQQVDKLVGA-----NKPELHKKITAILD 132 (139)
T ss_dssp HTTCC-----EESEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHHH
T ss_pred HcCCC-----cccEEEEE-cCCeEEEEEeCC-----CHHHHHHHHHHHhc
Confidence 88886 67787777 899999888532 35667777766543
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-11 Score=81.88 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=70.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++|+++|+|| +.||+.|....+.|.++.+++...++.++.|+.+. +.++++.|+
T Consensus 32 ~~k~vvv~f~-a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~-------------------------~~~~~~~~~ 85 (121)
T 2j23_A 32 GDKVVVIDFW-ATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE-------------------------QSQIAQEVG 85 (121)
T ss_dssp SSSCEEEEEE-CTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT-------------------------CHHHHHHHT
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC-------------------------CHHHHHHcC
Confidence 5788988888 88999999999999999999887779999998764 245777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ..+++.+.|+++
T Consensus 86 v~-----~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~ 119 (121)
T 2j23_A 86 IR-----AMPTFVFF-KNGQKIDTVVGA-----DPSKLQAAITQH 119 (121)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred CC-----cccEEEEE-ECCeEEeeEcCC-----CHHHHHHHHHHh
Confidence 86 56787777 599999887421 567777777664
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-11 Score=79.80 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=67.9
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+|+++|.|| +.||+.|....+.|.++.+++.+ ++.++.|+.+. +.++++.|++
T Consensus 24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~v 76 (112)
T 1ep7_A 24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA-------------------------VAAVAEAAGI 76 (112)
T ss_dssp TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------------------------THHHHHHHTC
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc-------------------------hHHHHHHcCC
Confidence 788999998 88999999999999999988875 68999998753 3467788888
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
. ..|+.+++ ++|+++..+.+. +.+++.+.|+++.
T Consensus 77 ~-----~~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~l 110 (112)
T 1ep7_A 77 T-----AMPTFHVY-KDGVKADDLVGA-----SQDKLKALVAKHA 110 (112)
T ss_dssp C-----BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred C-----cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHHHh
Confidence 6 56775555 899999887421 4567777776653
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=80.52 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=69.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh---cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE---RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~---~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
.+++++|+|| +.||++|+...+.+.++.+++.+ .++.++.|..+. +.++++
T Consensus 24 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~l~~ 77 (133)
T 1x5d_A 24 SEDVWMVEFY-APWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV-------------------------NQVLAS 77 (133)
T ss_dssp SSSEEEEEEE-CTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT-------------------------CCHHHH
T ss_pred CCCeEEEEEE-CCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC-------------------------CHHHHH
Confidence 4688888888 88999999999999999999974 458888887653 357888
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.|++. ..|+++++++ |+++..+.+ ....+++.+.|+++.
T Consensus 78 ~~~v~-----~~Pt~~~~~~-g~~~~~~~G----~~~~~~l~~~l~~~~ 116 (133)
T 1x5d_A 78 RYGIR-----GFPTIKIFQK-GESPVDYDG----GRTRSDIVSRALDLF 116 (133)
T ss_dssp HHTCC-----SSSEEEEEET-TEEEEEECS----CCSHHHHHHHHHHHH
T ss_pred hCCCC-----eeCeEEEEeC-CCceEEecC----CCCHHHHHHHHHHHh
Confidence 89987 5789999986 888777742 235677777776554
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-11 Score=82.40 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=67.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| +.||+.|....+.+.++.+++.+ .+.++.|..+. +.++++.|+
T Consensus 34 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~l~~~~~ 86 (130)
T 2dml_A 34 SDGLWLVEFY-APWCGHCQRLTPEWKKAATALKD-VVKVGAVNADK-------------------------HQSLGGQYG 86 (130)
T ss_dssp CSSCEEEEEE-CTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTT-------------------------CHHHHHHHT
T ss_pred CCCeEEEEEE-CCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCC-------------------------CHHHHHHcC
Confidence 4678888888 88999999999999999998875 38888887642 356788899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|++++++++|+++..+.+ ....+++++.|.+.
T Consensus 87 v~-----~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 87 VQ-----GFPTIKIFGANKNKPEDYQG----GRTGEAIVDAALSA 122 (130)
T ss_dssp CC-----SSSEEEEESSCTTSCEECCS----CCSHHHHHHHHHHH
T ss_pred CC-----ccCEEEEEeCCCCeEEEeec----CCCHHHHHHHHHHH
Confidence 87 67899999999985555532 23556677766544
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=84.25 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=71.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++++||.|| +.||+.|....+.+.++.+++.+ ++.++.|..+. +.++++.|+
T Consensus 23 ~~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 75 (140)
T 3hz4_A 23 SKKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIAT-------------------------NPWTAEKYG 75 (140)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTT-------------------------CHHHHHHHT
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCc-------------------------CHhHHHHCC
Confidence 4788999998 88999999999999999999976 48888888653 235777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc------CCccccCCCCCC
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT------GKLCACNRTLNG 178 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~------~~~~~~~~~~~~ 178 (181)
+. ..|+.+++ ++|+++..+.+. ...+++.+.|+++.. ....|.++..++
T Consensus 76 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 130 (140)
T 3hz4_A 76 VQ-----GTPTFKFF-CHGRPVWEQVGQ----IYPSILKNAVRDMLQHGEECIRKSTPVGQDITG 130 (140)
T ss_dssp CC-----EESEEEEE-ETTEEEEEEESS----CCHHHHHHHHHHHHHHHHHHHHTSBC-------
T ss_pred CC-----cCCEEEEE-eCCcEEEEEcCC----CCHHHHHHHHHHHhcccccCcccccccCcccee
Confidence 87 67777777 799999887532 345666666655542 235666665443
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.22 E-value=8.1e-11 Score=77.46 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=68.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++++++|+|| +.||+.|....+.+.++.+++.+ +.++.|+.+. +.++++.|+
T Consensus 15 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~-------------------------~~~~~~~~~ 66 (104)
T 2e0q_A 15 SHEIAVVDFW-AEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE-------------------------NPDIAARYG 66 (104)
T ss_dssp HSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------------------------CHHHHHHTT
T ss_pred cCCcEEEEEE-CCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC-------------------------CHHHHHhCC
Confidence 4688888888 88999999999999999888864 8898888753 245778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 67 v~-----~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~ 101 (104)
T 2e0q_A 67 VM-----SLPTVIFF-KDGEPVDEIIGA----VPREEIEIRIKNL 101 (104)
T ss_dssp CC-----SSCEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred cc-----ccCEEEEE-ECCeEhhhccCC----CCHHHHHHHHHHH
Confidence 86 56798888 899999877432 3456777777654
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-11 Score=82.85 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| +.||+.|....+.+.++.+++.+ ++.++.|+.+. +.++++.|+
T Consensus 39 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 91 (128)
T 2o8v_B 39 ADGAILVDFW-AEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQ-------------------------NPGTAPKYG 91 (128)
T ss_dssp CSSEEEEEEE-CSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTT-------------------------CCTTSGGGT
T ss_pred cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC-------------------------CHHHHHHcC
Confidence 4688888888 88999999999999999988875 48888888763 235667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 92 v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 92 IR-----GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN 126 (128)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred CC-----ccCEEEEE-eCCEEEEEEcCC----CCHHHHHHHHHHh
Confidence 86 56799999 899999887532 3457777777654
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.4e-11 Score=81.08 Aligned_cols=96 Identities=9% Similarity=0.069 Sum_probs=71.7
Q ss_pred eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCC
Q psy2878 43 WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRH 122 (181)
Q Consensus 43 ~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 122 (181)
.++|.|| ++||++|....+.+.++.+++.+.++.++.|..+. +.++++.|++.
T Consensus 24 ~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~~~~~~~v~- 76 (126)
T 1x5e_A 24 DWMIEFY-APWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE-------------------------QPGLSGRFIIN- 76 (126)
T ss_dssp EEEEEEE-CSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT-------------------------CHHHHHHTTCC-
T ss_pred CEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC-------------------------CHHHHHHcCCc-
Confidence 4777777 89999999999999999999987689999988663 23477888886
Q ss_pred CCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccCCcccc-CCC
Q psy2878 123 ETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCAC-NRT 175 (181)
Q Consensus 123 ~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~~~~~-~~~ 175 (181)
..|+++++ ++|++ ..+.+ ....+++.+.|+++......|. .|.
T Consensus 77 ----~~Pt~~~~-~~G~~-~~~~G----~~~~~~l~~~l~~~~~~~~~~~~~~~ 120 (126)
T 1x5e_A 77 ----ALPTIYHC-KDGEF-RRYQG----PRTKKDFINFISDKEWKSIEPVSSWF 120 (126)
T ss_dssp ----SSSEEEEE-ETTEE-EECCS----CCCHHHHHHHHHTCGGGGSCEECCCC
T ss_pred ----ccCEEEEE-eCCeE-EEeec----CCCHHHHHHHHHHHhhccCCCchhhh
Confidence 56799999 89996 34422 2467888888887764433332 354
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9e-11 Score=80.05 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=67.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| +.||+.|....+.|.++.+++.+ +.++.|+.+. +.++++.|+
T Consensus 33 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~-------------------------~~~~~~~~~ 84 (122)
T 2vlu_A 33 AKKLVVIDFT-ASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE-------------------------LKPIAEQFS 84 (122)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------------------------CHHHHHHTT
T ss_pred cCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC-------------------------CHHHHHHcC
Confidence 5788999998 88999999999999999888764 8898888764 346778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+.+++ ++|+++..+.+. . .+++.+.|+++.
T Consensus 85 v~-----~~Pt~~~~-~~G~~~~~~~G~----~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 85 VE-----AMPTFLFM-KEGDVKDRVVGA----I-KEELTAKVGLHA 119 (122)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESS----C-HHHHHHHHHHHH
T ss_pred CC-----cccEEEEE-eCCEEEEEEeCc----C-HHHHHHHHHHHh
Confidence 86 56675555 899999887432 1 677777777654
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-12 Score=91.47 Aligned_cols=80 Identities=10% Similarity=-0.009 Sum_probs=59.7
Q ss_pred ecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 35 TESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
.+++++||+++|+|| ++|||+|+.++|.|.++++++. ++.++.|+.|... +.+.++ .-
T Consensus 48 ~l~~~~~k~vvv~F~-A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~~---~~~~~~----~~------------ 105 (167)
T 1z6n_A 48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAE---DDLRQR----LA------------ 105 (167)
T ss_dssp HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHH---HHTTTT----TT------------
T ss_pred HHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCCH---HHHHHH----HH------------
Confidence 356778999999988 9999999999999999998764 6888888766321 222222 10
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
.++. ..|+++++|++|+++.++
T Consensus 106 ---~~v~-----~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 106 ---LERI-----AIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp ---CSSC-----CSSEEEEECTTCCEEEEE
T ss_pred ---cCCC-----CcCeEEEECCCCCEEEEE
Confidence 1233 567999999999998877
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-11 Score=79.66 Aligned_cols=87 Identities=7% Similarity=0.053 Sum_probs=62.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| ++||++|....|.+.++.+++. ++.++.|+.|. +.++++.|+
T Consensus 17 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~-------------------------~~~l~~~~~ 68 (105)
T 4euy_A 17 EQQLVLLFIK-TENCGVCDVMLRKVNYVLENYN--YVEKIEILLQD-------------------------MQEIAGRYA 68 (105)
T ss_dssp CSSEEEEEEE-ESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECC-------------------------C--------
T ss_pred cCCCEEEEEe-CCCCcchHHHHHHHHHHHHHcC--CceEEEEECCC-------------------------CHHHHHhcC
Confidence 5788999998 8899999999999999998884 68888888653 235667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|++++++ +|+++.++.+. ...+++.+.|+++
T Consensus 69 v~-----~~Pt~~~~~-~G~~~~~~~g~----~~~~~l~~~l~~~ 103 (105)
T 4euy_A 69 VF-----TGPTVLLFY-NGKEILRESRF----ISLENLERTIQLF 103 (105)
T ss_dssp -C-----CCCEEEEEE-TTEEEEEEESS----CCHHHHHHHHHTT
T ss_pred CC-----CCCEEEEEe-CCeEEEEEeCC----cCHHHHHHHHHHh
Confidence 76 567988885 99999887532 3567888888765
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=84.94 Aligned_cols=91 Identities=11% Similarity=0.157 Sum_probs=69.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.+|++||+|| +.||+.|+...+.|.++.+++...+ +.++.|..+. +.++++.
T Consensus 33 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~~~~~ 86 (140)
T 2dj1_A 33 DKDTVLLEFY-APWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-------------------------ASMLASK 86 (140)
T ss_dssp TCSEEEEEEC-CTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT-------------------------CHHHHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc-------------------------cHHHHHH
Confidence 5788988888 8899999999999999999998764 6666665442 3567888
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccC
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~ 167 (181)
|++. ..|+++++ ++|+ +..+.+ ....+++.+.|+++...
T Consensus 87 ~~v~-----~~Pt~~~~-~~G~-~~~~~g----~~~~~~l~~~l~~~~~~ 125 (140)
T 2dj1_A 87 FDVS-----GYPTIKIL-KKGQ-AVDYDG----SRTQEEIVAKVREVSQP 125 (140)
T ss_dssp TTCC-----SSSEEEEE-ETTE-EEECCS----CCCHHHHHHHHHHHHSS
T ss_pred CCCC-----ccCeEEEE-ECCc-EEEcCC----CCCHHHHHHHHHHhcCC
Confidence 9986 56799999 7898 444422 24678888888776543
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.19 E-value=9.5e-11 Score=78.89 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=68.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|+|| ++||+.|....+.+.++.+++. ++.++.|..+. +.++++.|+
T Consensus 18 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------------------------~~~l~~~~~ 69 (110)
T 2l6c_A 18 GLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA-------------------------RPELMKELG 69 (110)
T ss_dssp TCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG-------------------------CHHHHHHTT
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC-------------------------CHHHHHHcC
Confidence 4678888888 8899999999999998887764 57888777643 345778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|+++++ ++|+++.++.+. .+.+++.+.|++...
T Consensus 70 v~-----~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~~~~~~~ 106 (110)
T 2l6c_A 70 FE-----RVPTLVFI-RDGKVAKVFSGI----MNPRELQALYASIHH 106 (110)
T ss_dssp CC-----SSCEEEEE-ESSSEEEEEESC----CCHHHHHHHHHTC--
T ss_pred Cc-----ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHHHhh
Confidence 86 57899999 899999888532 356788888876653
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.19 E-value=8e-11 Score=77.97 Aligned_cols=89 Identities=11% Similarity=0.146 Sum_probs=69.4
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++.++|+++|.|| +.||+.|....+.+.++.+++. ++.++.|+.+. +.++++
T Consensus 16 ~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~-------------------------~~~~~~ 67 (105)
T 3m9j_A 16 DAAGDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD-------------------------CQDVAS 67 (105)
T ss_dssp HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTT-------------------------CHHHHH
T ss_pred HhcCCCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhh-------------------------hHHHHH
Confidence 3446889999998 8899999999999999998885 48888888753 245777
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.|++. ..|+.+++ ++|+++..+.+. ..+++.+.|+++
T Consensus 68 ~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~~ 104 (105)
T 3m9j_A 68 ESEVK-----SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL 104 (105)
T ss_dssp HTTCC-----BSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred HcCCC-----cCcEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHHh
Confidence 88886 67899999 799998887421 556777777654
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=76.82 Aligned_cols=89 Identities=8% Similarity=0.146 Sum_probs=70.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| +.||+.|....+.+.++.+++.+ ++.++.|+.+. +.++++.|+
T Consensus 17 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 69 (109)
T 2yzu_A 17 QHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDE-------------------------NPKTAMRYR 69 (109)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCC-------------------------CHhHHHhCC
Confidence 4688888888 88999999999999999988875 58888888764 235777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++.
T Consensus 70 v~-----~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 70 VM-----SIPTVILF-KDGQPVEVLVGA----QPKRNYQAKIEKHL 105 (109)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHTTC
T ss_pred CC-----cCCEEEEE-eCCcEeeeEeCC----CCHHHHHHHHHHHh
Confidence 86 56799999 899999877432 35678888887664
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-10 Score=82.65 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=71.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++++||+|| +.||++|....+.|.++.+++.. ++.++.|+.+. +.++++.|+
T Consensus 63 ~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 115 (155)
T 2ppt_A 63 DDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQA-------------------------HPAVAGRHR 115 (155)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT-------------------------STHHHHHTT
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCc-------------------------cHHHHHHcC
Confidence 5789999998 89999999999999999999975 48999988763 246788899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++.
T Consensus 116 i~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 116 IQ-----GIPAFILF-HKGRELARAAGA----RPASELVGFVRGKL 151 (155)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHH
T ss_pred CC-----cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHHHh
Confidence 87 56798888 799999887532 35677777777654
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=76.85 Aligned_cols=88 Identities=10% Similarity=0.159 Sum_probs=66.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|+|| +.||+.|....+.+.++.+++++ ++.++.|+.+. +.++++.|+
T Consensus 17 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 69 (105)
T 1fb6_A 17 SEVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDE-------------------------APGIATQYN 69 (105)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcc-------------------------hHHHHHhCC
Confidence 4688988888 88999999999999999988875 48888888764 236777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++..+.+. ...+++.+.|+++
T Consensus 70 v~-----~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 70 IR-----SIPTVLFF-KNGERKESIIGA----VPKSTLTDSIEKY 104 (105)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEEEC----CCHHHHHHHHHHH
T ss_pred CC-----cccEEEEE-eCCeEEEEEecC----CCHHHHHHHHHhh
Confidence 76 56776666 799999887532 3456677776654
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-12 Score=94.75 Aligned_cols=104 Identities=10% Similarity=0.051 Sum_probs=72.0
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCc
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNG 112 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 112 (181)
.++.+..+||++||+|| ++||++|+.+.|.|.++.+.+.. ++.++.|+.+....
T Consensus 38 ~~~~~~~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~------------------------ 91 (164)
T 1sen_A 38 GKKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEE------------------------ 91 (164)
T ss_dssp HHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGS------------------------
T ss_pred HHHHHHhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCch------------------------
Confidence 45555567899999999 89999999999999997665543 57788888764321
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHhhc
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDAIQ 165 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~l~ 165 (181)
.+++.|++. +...|+++++|++|+++.+..+.... ....+++++.|+++.
T Consensus 92 ~~~~~~~~~---~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l 147 (164)
T 1sen_A 92 PKDEDFSPD---GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ 147 (164)
T ss_dssp CSCGGGCTT---CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHhccc---CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence 012234442 22468999999999999777532221 256788888877664
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-11 Score=85.29 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=65.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|++||.|| ++||++|+.+.|.|.++.+++.++ +.++.|+.|. +.++++.|+
T Consensus 22 ~~k~vlv~F~-a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~-------------------------~~~l~~~~~ 74 (149)
T 3gix_A 22 AEKVLVLRFG-RDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQ-------------------------TAVYTQYFD 74 (149)
T ss_dssp CSSEEEEEEE-CTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTT-------------------------CCHHHHHTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCc-------------------------CHHHHHHcC
Confidence 4789999998 999999999999999999888653 7888887642 346788888
Q ss_pred CCCCCCcceeeEEEEcCCCcEE---------EEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQ---------HITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~---------~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++ ++++|+++ .++.+. ....+++.+.|+++
T Consensus 75 v~-----~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~---~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 75 IS-----YIPSTV-FFFNGQHMKVDYGSPDHTKFVGS---FKTKQDFIDLIEVI 119 (149)
T ss_dssp CC-----SSSEEE-EEETTEEEEEECSSSCCSCEESC---CSSHHHHHHHHHHH
T ss_pred CC-----ccCeEE-EEECCeEEEeecCCCCCCeEeee---cCCHHHHHHHHHHH
Confidence 87 567887 66899999 444221 12445666666555
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=79.08 Aligned_cols=85 Identities=9% Similarity=0.177 Sum_probs=65.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+||+++|+|| +.||+.|....+.|.++.+++.+ +.++.|+.+. +.++++.|+
T Consensus 29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~-------------------------~~~l~~~~~ 80 (114)
T 2oe3_A 29 QNDKLVIDFY-ATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE-------------------------SPDIAKECE 80 (114)
T ss_dssp HCSEEEEEEE-CTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC-------------------------CHHHHHHCC
Confidence 5788989888 89999999999999999888764 8898888753 235777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+. ..|+.+++ ++|+++..+.+. . .+++.+.|++
T Consensus 81 v~-----~~Pt~~~~-~~G~~~~~~~G~----~-~~~l~~~l~~ 113 (114)
T 2oe3_A 81 VT-----AMPTFVLG-KDGQLIGKIIGA----N-PTALEKGIKD 113 (114)
T ss_dssp CC-----SBSEEEEE-ETTEEEEEEESS----C-HHHHHHHHHT
T ss_pred CC-----cccEEEEE-eCCeEEEEEeCC----C-HHHHHHHHHh
Confidence 86 56776665 899999887432 1 5677777764
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=76.94 Aligned_cols=88 Identities=11% Similarity=0.207 Sum_probs=69.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||+.|....+.+.++.+++.+ ++.++.|..+. +.++++.|+
T Consensus 21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~ 73 (111)
T 3gnj_A 21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEE-------------------------EKTLFQRFS 73 (111)
T ss_dssp SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------------------------CHHHHHHTT
T ss_pred cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCc-------------------------ChhHHHhcC
Confidence 4688999998 88999999999999999988875 58888888753 236777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 74 v~-----~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~ 108 (111)
T 3gnj_A 74 LK-----GVPQILYF-KDGEYKGKMAGD----VEDDEVEQMIADV 108 (111)
T ss_dssp CC-----SSCEEEEE-ETTEEEEEEESS----CCHHHHHHHHHHH
T ss_pred CC-----cCCEEEEE-ECCEEEEEEecc----CCHHHHHHHHHHH
Confidence 86 57798888 699998877432 3567777777654
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=76.47 Aligned_cols=89 Identities=10% Similarity=0.118 Sum_probs=68.6
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++..||+++|.|| +.||+.|....+.+.++.+++. ++.++.|+.+. +.++++
T Consensus 15 ~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------------------------~~~~~~ 66 (104)
T 2vim_A 15 NENKGRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ-------------------------NEEAAA 66 (104)
T ss_dssp HTTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------CHHHHH
T ss_pred HhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC-------------------------CHHHHH
Confidence 3446889999998 8899999999999999988875 79999998763 245777
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.|++. ..|+.+++ ++|+++..+.+ .+.+++.+.|+++
T Consensus 67 ~~~v~-----~~Pt~~~~-~~g~~~~~~~G-----~~~~~l~~~l~~~ 103 (104)
T 2vim_A 67 KYSVT-----AMPTFVFI-KDGKEVDRFSG-----ANETKLRETITRH 103 (104)
T ss_dssp HTTCC-----SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred HcCCc-----cccEEEEE-eCCcEEEEEeC-----CCHHHHHHHHHhh
Confidence 88886 56786666 59999888742 2456777777654
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-11 Score=82.57 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=65.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.+++++|+|| +.||++|....+.|.++.+++... ++.++.|..+. +..+++.|
T Consensus 24 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~~~~~~ 77 (133)
T 2dj3_A 24 PKKDVLIEFY-APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA-------------------------NDITNDQY 77 (133)
T ss_dssp TTSEEEEEEC-CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT-------------------------SCCCCSSC
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc-------------------------CHHHHhhc
Confidence 4788999998 889999999999999999999763 57777666542 12334567
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++. ..|+++++++.+++....... ...+.+++.+.|+++..
T Consensus 78 ~v~-----~~Pt~~~~~~g~~~~~~~~~g--g~~~~~~l~~~l~~~~~ 118 (133)
T 2dj3_A 78 KVE-----GFPTIYFAPSGDKKNPIKFEG--GNRDLEHLSKFIDEHAT 118 (133)
T ss_dssp CCS-----SSSEEEEECTTCTTSCEECCS--SCCSTTHHHHHHHHHSS
T ss_pred CCC-----cCCEEEEEeCCCcccceEecC--CCcCHHHHHHHHHHhcc
Confidence 776 578999998777654322111 12355677777776654
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-12 Score=89.03 Aligned_cols=100 Identities=12% Similarity=0.138 Sum_probs=72.6
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEE
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFS 108 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
+.+.++..+||++||+|| +.||++|+...+.+ .++.+.+.. ++.++.|..+..
T Consensus 10 ~~~~~~~~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---------------------- 65 (130)
T 2lst_A 10 EALALAQAHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTP---------------------- 65 (130)
Confidence 678888888999999998 89999999999988 777776654 477777776532
Q ss_pred cCCchHHHHhCCCCCCCcceeeEEEEcC-CCcE--EEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 109 DTNGSLIDQLGIRHETGVALRATFIFDP-QNII--QHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 109 D~~~~~~~~~gv~~~~g~~~p~~~liD~-~g~i--~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.+.++++.|++. ..|+++++|+ +|++ +.++.+. ...+++.+.|+++.
T Consensus 66 -~~~~~~~~~~v~-----~~Pt~~~~d~~~G~~~~~~~~~G~----~~~~~l~~~l~~~~ 115 (130)
T 2lst_A 66 -EGQELARRYRVP-----GTPTFVFLVPKAGAWEEVGRLFGS----RPRAEFLKELRQVC 115 (130)
Confidence 134677788876 5789999996 5998 7666432 22345555555544
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-11 Score=80.18 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++.+||+++|.|| +.||+.|....+.+.++.+++ ++.++.|+.+. +.++++
T Consensus 29 ~~~~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~-------------------------~~~~~~ 79 (117)
T 2xc2_A 29 EQHKNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK-------------------------LEETAR 79 (117)
T ss_dssp HHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT-------------------------SHHHHH
T ss_pred HhCCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc-------------------------cHHHHH
Confidence 3346889999998 889999999999999988777 78888888753 346778
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.|++. ..|+.+++ ++|+++..+.+ ...+++.+.|+++
T Consensus 80 ~~~v~-----~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 80 KYNIS-----AMPTFIAI-KNGEKVGDVVG-----ASIAKVEDMIKKF 116 (117)
T ss_dssp HTTCC-----SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred HcCCC-----ccceEEEE-eCCcEEEEEeC-----CCHHHHHHHHHHh
Confidence 88886 56675555 79999988742 2456777777654
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=81.94 Aligned_cols=88 Identities=8% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++|++||.|| +.||+.|+...+.+.++.+++. ++.++.|..+. +.++++.|+
T Consensus 31 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~-------------------------~~~l~~~~~ 82 (153)
T 2wz9_A 31 AKSLLVVHFW-APWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG-------------------------VPEVSEKYE 82 (153)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------SHHHHHHTT
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC-------------------------CHHHHHHcC
Confidence 4889999998 8899999999999999988873 68999988764 236778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|++++++ +|+++..+.+ ...+++.+.|+++..
T Consensus 83 v~-----~~Pt~~~~~-~G~~~~~~~G-----~~~~~l~~~i~~~l~ 118 (153)
T 2wz9_A 83 IS-----SVPTFLFFK-NSQKIDRLDG-----AHAPELTKKVQRHAS 118 (153)
T ss_dssp CC-----SSSEEEEEE-TTEEEEEEES-----SCHHHHHHHHHHHSC
T ss_pred CC-----CCCEEEEEE-CCEEEEEEeC-----CCHHHHHHHHHHHhc
Confidence 87 578999999 9999988742 245678888877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=89.74 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
...+||+++|.|| ++||++|+...|.+.++.+++.+ ++.++.|+.+.. .++++
T Consensus 22 ~~~~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-------------------------~~~~~ 74 (287)
T 3qou_A 22 EQSMTTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAE-------------------------QMIAA 74 (287)
T ss_dssp TTTTTSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTC-------------------------HHHHH
T ss_pred HhcCCCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccC-------------------------HHHHH
Confidence 3345899999999 88999999999999999999985 488998887642 36778
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.|++. ..|+++++ ++|+++..+.+. ...+.+.+.++..
T Consensus 75 ~~~v~-----~~Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~ 112 (287)
T 3qou_A 75 QFGLR-----AIPTVYLF-QNGQPVDGFQGP----QPEEAIRALLDXV 112 (287)
T ss_dssp TTTCC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred HcCCC-----CCCeEEEE-ECCEEEEEeeCC----CCHHHHHHHHHHH
Confidence 88887 56788888 699999887532 2345555555543
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=77.68 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=68.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.||+++|+|| +.||+.|....+.+.++.+++. ++.++.|+.+. +.++++.|+
T Consensus 27 ~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------------------------~~~~~~~~~ 78 (118)
T 2vm1_A 27 TGKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE-------------------------LKDVAEAYN 78 (118)
T ss_dssp HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------SHHHHHHTT
T ss_pred CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc-------------------------CHHHHHHcC
Confidence 4788999998 8899999999999999988876 78898888753 346777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|+.+++ ++|+++..+.+ ...+++.+.|+++..
T Consensus 79 v~-----~~Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~l~~~~~ 114 (118)
T 2vm1_A 79 VE-----AMPTFLFI-KDGEKVDSVVG-----GRKDDIHTKIVALMG 114 (118)
T ss_dssp CC-----SBSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHHHC
T ss_pred CC-----cCcEEEEE-eCCeEEEEecC-----CCHHHHHHHHHHHhc
Confidence 86 56787776 79999987742 246777777776654
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=79.00 Aligned_cols=89 Identities=10% Similarity=0.151 Sum_probs=69.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.|+++||+|| ++||+.|+...+.|.++.+++ .++.++.|+.+.. .++++.|+
T Consensus 22 ~~~~vlv~f~-a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~-------------------------~~~~~~~~ 73 (118)
T 2f51_A 22 APGLVLVDFF-ATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDKN-------------------------GNAADAYG 73 (118)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTC-------------------------HHHHHHTT
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCCC-------------------------HHHHHhcC
Confidence 4788999988 889999999999999999888 5799999987642 35777888
Q ss_pred CCCCCCcceeeEEEEcC---CCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDP---QNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~---~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|++++++. +|+++.++.+ ...+++.+.+++...
T Consensus 74 i~-----~~Pt~~~~~~~~~~G~~~~~~~G-----~~~~~l~~~~~~~~~ 113 (118)
T 2f51_A 74 VS-----SIPALFFVKKEGNEIKTLDQFVG-----ADVSRIKADIEKFKH 113 (118)
T ss_dssp CC-----SSSEEEEEEEETTEEEEEEEEES-----CCHHHHHHHHHHHC-
T ss_pred CC-----CCCEEEEEeCCCCcceEEEeecC-----CCHHHHHHHHHHhhh
Confidence 86 5679999975 4999988853 334667777776653
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-10 Score=75.09 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=67.4
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.++++++|.|| +.||+.|....+.+.++.++++ .++.++.|+.+. +.++++.|
T Consensus 18 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~-------------------------~~~~~~~~ 70 (106)
T 1xwb_A 18 ASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDE-------------------------CEDIAMEY 70 (106)
T ss_dssp HTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTT-------------------------CHHHHHHT
T ss_pred cCCCEEEEEEE-CCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccc-------------------------hHHHHHHc
Confidence 46788999988 8899999999999999998886 368888888763 34677888
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
++. ..|+.+++ ++|+++..+.+ .+.+++.+.|+++
T Consensus 71 ~v~-----~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 71 NIS-----SMPTFVFL-KNGVKVEEFAG-----ANAKRLEDVIKAN 105 (106)
T ss_dssp TCC-----SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHT
T ss_pred CCC-----cccEEEEE-cCCcEEEEEcC-----CCHHHHHHHHHHh
Confidence 886 56675555 79999988742 2456777777654
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-10 Score=75.62 Aligned_cols=86 Identities=8% Similarity=0.055 Sum_probs=65.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++|+++|.|| ++||++|....|.+.++.+++. ++.++.|..+.. .++++.|+
T Consensus 20 ~~~~v~v~f~-a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~-------------------------~~~~~~~~ 71 (107)
T 1gh2_A 20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQC-------------------------QGTAATNN 71 (107)
T ss_dssp TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTS-------------------------HHHHHHTT
T ss_pred CCCEEEEEEE-CCCChhhHHHHHHHHHHHHHCC--CcEEEEEECccC-------------------------HHHHHhcC
Confidence 5788999988 8899999999999999998883 688988887642 35677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++..+.+ ...+++.+.|+++
T Consensus 72 v~-----~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~ 105 (107)
T 1gh2_A 72 IS-----ATPTFQFF-RNKVRIDQYQG-----ADAVGLEEKIKQH 105 (107)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred CC-----cccEEEEE-ECCeEEEEEeC-----CCHHHHHHHHHHh
Confidence 86 56787777 79999987743 2234566666543
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=78.64 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=67.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++++||.|| +.||+.|....+.|.++.+++. ++.++.|..+. +.++++.|+
T Consensus 36 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------------------------~~~l~~~~~ 87 (125)
T 1r26_A 36 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN-------------------------NSEIVSKCR 87 (125)
T ss_dssp SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT-------------------------CHHHHHHTT
T ss_pred cCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC-------------------------CHHHHHHcC
Confidence 5788999998 8899999999999999998884 69999998863 245778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+++++ ++|+++..+.+ ...+++.+.|+++.
T Consensus 88 v~-----~~Pt~~i~-~~G~~~~~~~G-----~~~~~l~~~l~~~l 122 (125)
T 1r26_A 88 VL-----QLPTFIIA-RSGKMLGHVIG-----ANPGMLRQKLRDII 122 (125)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHHH
T ss_pred CC-----cccEEEEE-eCCeEEEEEeC-----CCHHHHHHHHHHHh
Confidence 86 56776655 89999988742 24467777776553
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-10 Score=76.16 Aligned_cols=86 Identities=9% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+||+++|+|| +.||+.|....+.+.++.+++. ++.++.|+.+.. .++++.|+
T Consensus 25 ~~k~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~-------------------------~~~~~~~~ 76 (112)
T 1syr_A 25 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEV-------------------------SEVTEKEN 76 (112)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTT-------------------------HHHHHHTT
T ss_pred cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCCC-------------------------HHHHHHcC
Confidence 5788988888 8899999999999999988875 589999987642 25677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++..+.+ ...+++.+.|+++
T Consensus 77 v~-----~~Pt~~~~-~~G~~~~~~~G-----~~~~~l~~~l~~~ 110 (112)
T 1syr_A 77 IT-----SMPTFKVY-KNGSSVDTLLG-----ANDSALKQLIEKY 110 (112)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHTT
T ss_pred CC-----cccEEEEE-ECCcEEEEEeC-----CCHHHHHHHHHHh
Confidence 76 56675555 69999887742 1567777777764
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=76.73 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
+...|++++|+|| +.||+.|....+.+.++.+++. ++.++.|+.+. +.++++
T Consensus 22 ~~~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------------------------~~~~~~ 73 (113)
T 1ti3_A 22 GKGSQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE-------------------------LKAVAE 73 (113)
T ss_dssp HTTSSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------------------------CHHHHH
T ss_pred hhhcCCeEEEEEE-CCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc-------------------------cHHHHH
Confidence 3345888988888 8899999999999999988875 68888888753 245677
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.|++. ..|+.+++ ++|+++..+.+ . +.+++.+.|+++
T Consensus 74 ~~~v~-----~~Pt~~~~-~~G~~~~~~~g-~----~~~~l~~~l~~~ 110 (113)
T 1ti3_A 74 EWNVE-----AMPTFIFL-KDGKLVDKTVG-A----DKDGLPTLVAKH 110 (113)
T ss_dssp HHHCS-----STTEEEEE-ETTEEEEEEEC-C----CTTHHHHHHHHH
T ss_pred hCCCC-----cccEEEEE-eCCEEEEEEec-C----CHHHHHHHHHHh
Confidence 78876 56687777 69999988853 2 234555555544
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=80.64 Aligned_cols=94 Identities=9% Similarity=0.014 Sum_probs=66.8
Q ss_pred eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCC
Q psy2878 43 WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRH 122 (181)
Q Consensus 43 ~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 122 (181)
+++|+|| ++||++|+.+.|.+.++.++++ +.++.|+.+....... . |.+.++++.|++.
T Consensus 33 ~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~~-~---------------d~~~~l~~~~~v~- 91 (135)
T 3emx_A 33 DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGERE-L---------------SAARLEMNKAGVE- 91 (135)
T ss_dssp SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHHH-H---------------HHHHHHHHHHTCC-
T ss_pred cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhhh-h---------------hhhHHHHHHcCCc-
Confidence 7888888 8899999999999999987774 8899998865332211 1 2236788999987
Q ss_pred CCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 123 ETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 123 ~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
..|+.++++ +|+++.++.+. ...+.+.+.++++..
T Consensus 92 ----~~Pt~~~~~-~G~~v~~~~G~----~~~~~~~~~i~~~~~ 126 (135)
T 3emx_A 92 ----GTPTLVFYK-EGRIVDKLVGA----TPWSLKVEKAREIYG 126 (135)
T ss_dssp ----SSSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHHHC-
T ss_pred ----eeCeEEEEc-CCEEEEEEeCC----CCHHHHHHHHHHHhC
Confidence 567666665 99999988532 334555556666554
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-10 Score=84.58 Aligned_cols=91 Identities=14% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
++|+++|.|| +.||++|+.+.|.+.++.+++.++ +.++.|+.+. +..+++.|+
T Consensus 29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~-------------------------~~~l~~~~~ 81 (222)
T 3dxb_A 29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------------------------NPGTAPKYG 81 (222)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------------------------CTTTGGGGT
T ss_pred cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCC-------------------------CHHHHHHcC
Confidence 4789999998 899999999999999999998754 8888888753 234567888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccC
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~ 167 (181)
+. ..|++++++ +|+++..+.+. ...+++.+.|+++..+
T Consensus 82 v~-----~~Pt~~~~~-~G~~~~~~~G~----~~~~~l~~~l~~~l~~ 119 (222)
T 3dxb_A 82 IR-----GIPTLLLFK-NGEVAATKVGA----LSKGQLKEFLDANLAG 119 (222)
T ss_dssp CC-----SBSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHHHSCC
T ss_pred CC-----cCCEEEEEE-CCeEEEEeccc----cChHHHHHHHHhhccc
Confidence 87 567887774 99999887532 4567888888777643
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5e-10 Score=76.00 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=68.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|+|| +.||+.|....+.+.++.+++.. ++.++.|+.+. +.++++.|+
T Consensus 29 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 81 (121)
T 2i1u_A 29 SNKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDT-------------------------NPETARNFQ 81 (121)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC-------------------------CHHHHHhcC
Confidence 4688989988 88999999999999999988865 58899888764 235777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+++++ ++|+++..+.+. ...+++.+.|+++.
T Consensus 82 i~-----~~Pt~~~~-~~g~~~~~~~G~----~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 82 VV-----SIPTLILF-KDGQPVKRIVGA----KGKAALLRELSDVV 117 (121)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTCSCC
T ss_pred CC-----cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHHHHH
Confidence 86 56787777 599998887432 34567777776554
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=78.44 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=69.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|.|| +.||+.|....+.+.++.+++.. ++.++.|..+.. .++++.|+
T Consensus 20 ~~~~~lv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-------------------------~~~~~~~~ 72 (122)
T 3aps_A 20 GKTHWVVDFY-APWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAY-------------------------PQTCQKAG 72 (122)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTC-------------------------HHHHHHTT
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCC-------------------------HHHHHHcC
Confidence 4688999988 88999999999999999998875 689998887642 35777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|+++++++.|.+ ..+.+......+.+++.+.|+++..
T Consensus 73 v~-----~~Pt~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~l~~~l~ 113 (122)
T 3aps_A 73 IK-----AYPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKLE 113 (122)
T ss_dssp CC-----SSSEEEEEEEEGGG-TEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred CC-----ccceEEEEeCCCcc-ceeeccccCcCCHHHHHHHHHHHHH
Confidence 87 57899999887774 3332211012456777777766643
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.7e-11 Score=88.33 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=71.0
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.+|+++||.|| ++||++|....|.+.++.+++.. .+.++.|..+.. .++++.|
T Consensus 112 ~~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~-------------------------~~l~~~~ 164 (210)
T 3apq_A 112 NSGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDD-------------------------RMLCRMK 164 (210)
T ss_dssp HHSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTC-------------------------HHHHHHT
T ss_pred ccCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCcc-------------------------HHHHHHc
Confidence 46789999998 88999999999999999998864 488888886542 3567778
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++. ..|+++++ ++|+++..+.+ ....+++.+.|+++..
T Consensus 165 ~v~-----~~Pt~~~~-~~G~~~~~~~G----~~~~~~l~~~i~~~l~ 202 (210)
T 3apq_A 165 GVN-----SYPSLFIF-RSGMAAVKYNG----DRSKESLVAFAMQHVR 202 (210)
T ss_dssp TCC-----SSSEEEEE-CTTSCCEECCS----CCCHHHHHHHHHHHHH
T ss_pred CCC-----cCCeEEEE-ECCCceeEecC----CCCHHHHHHHHHHhCc
Confidence 886 56788888 89999877642 2456788888876643
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-10 Score=76.57 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=63.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.|++++|+|| ++||++|+...|.+.++.+++. ..++.+..+...... ...++++.|+
T Consensus 28 ~~~~~~v~f~-a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~~~~~~-------------------~~~~~~~~~~ 84 (118)
T 1zma_A 28 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLN-------------------DLQAFRSRYG 84 (118)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHH-------------------HHHHHHHHHT
T ss_pred CCCeEEEEEE-CCCCccHHHHHHHHHHHHHhcC---CeEEEEECCCcCcHH-------------------HHHHHHHHcC
Confidence 4688888888 8899999999999999988764 456666665432111 1235778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
+. ..|+++++ ++|+++.++.+. ...+++.+.|+
T Consensus 85 i~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~ 117 (118)
T 1zma_A 85 IP-----TVPGFVHI-TDGQINVRCDSS----MSAQEIKDFAG 117 (118)
T ss_dssp CC-----SSCEEEEE-ETTEEEEECCTT----CCHHHHHHHHT
T ss_pred CC-----CCCeEEEE-ECCEEEEEecCC----CCHHHHHHHhh
Confidence 87 56798888 499998776321 34566666654
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.6e-10 Score=76.92 Aligned_cols=89 Identities=12% Similarity=0.144 Sum_probs=67.6
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++.++|+|| +.||+.|....+.|.++.+++.. ++.++.|+.+. +.++++.|++
T Consensus 50 ~~~vvv~f~-~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~v 102 (140)
T 1v98_A 50 APLTLVDFF-APWCGPCRLVSPILEELARDHAG-RLKVVKVNVDE-------------------------HPGLAARYGV 102 (140)
T ss_dssp CCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT-------------------------CHHHHHHTTC
T ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCC-------------------------CHHHHHHCCC
Confidence 334777777 88999999999999999998875 48888888764 2357778888
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
. ..|+++++ ++|+++..+.+. ...+++.+.|+++..
T Consensus 103 ~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 103 R-----SVPTLVLF-RRGAPVATWVGA----SPRRVLEERLRPYLE 138 (140)
T ss_dssp C-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHHT
T ss_pred C-----ccCEEEEE-eCCcEEEEEeCC----CCHHHHHHHHHHHHc
Confidence 6 56788888 799999877532 346777777776543
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-10 Score=76.78 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=68.4
Q ss_pred eeeecC-CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh----cCcEEEEEecCCHHHHHHHHHHcCCCcccceeE
Q psy2878 32 KVITES-SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE----RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQ 106 (181)
Q Consensus 32 ~~~~l~-~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~----~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~ 106 (181)
+.+... ..++++++|.|| ++||++|+...|.+.++.+++.. .++.++.|..+.. .
T Consensus 15 ~~f~~~v~~~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------~----- 74 (121)
T 2djj_A 15 KNYNEIVLDDTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN--------------D----- 74 (121)
T ss_dssp TTTTTSSSCTTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS--------------C-----
T ss_pred cCHHHHhhcCCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc--------------c-----
Confidence 444433 236789999998 88999999999999999999986 2688888876531 1
Q ss_pred EEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 107 FSDTNGSLIDQLGIRHETGVALRATFIFDPQNII-QHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 107 ~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i-~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+++ ++. ..|+++++++.|++ +..+.+ ....+++.+.|+++.
T Consensus 75 -------~~~--~v~-----~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 75 -------VPD--EIQ-----GFPTIKLYPAGAKGQPVTYSG----SRTVEDLIKFIAENG 116 (121)
T ss_dssp -------CSS--CCS-----SSSEEEEECSSCTTSCCCCCC----CSCHHHHHHHHHHTS
T ss_pred -------ccc--ccC-----cCCeEEEEeCcCCCCceEecC----CCCHHHHHHHHHhcc
Confidence 111 555 56799999988884 434421 246788888887664
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.2e-10 Score=76.97 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=64.9
Q ss_pred CCCeEEEEEeeCCCCC--------------CChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCccccee
Q psy2878 40 PGKWKIFYFYPKDFTF--------------VCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHW 105 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp--------------~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~ 105 (181)
.||+++|.|| ++||+ +|+...|.+.++.+++++ ++.++.|+.|.
T Consensus 20 ~~k~vlv~F~-a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~-------------------- 77 (123)
T 1oaz_A 20 ADGAILVDFW-AEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ-------------------- 77 (123)
T ss_dssp CSSEEEEEEE-CSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS--------------------
T ss_pred CCCeEEEEEE-CCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCC--------------------
Confidence 4789999998 88999 999999999999988875 48888888663
Q ss_pred EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 106 QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 106 ~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+.++++.|++. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 78 -----~~~l~~~~~v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 78 -----NPGTAPKYGIR-----GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN 121 (123)
T ss_dssp -----CTTTGGGGTCC-----BSSEEEEE-ESSSEEEEEESC----CCHHHHHHHHTTT
T ss_pred -----CHHHHHHcCCC-----ccCEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHHH
Confidence 24677889987 67899999 899999887532 3467788877654
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=77.52 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=68.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
++|+++|.|| +.||+.|....+.+.++.+++++. ++.++.|..+. +..+++.
T Consensus 23 ~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~~~~~ 76 (120)
T 1mek_A 23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------------------------ESDLAQQ 76 (120)
T ss_dssp HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT-------------------------CCSSHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC-------------------------CHHHHHH
Confidence 5688888888 889999999999999999988764 35555555432 3467888
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEE--EEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQ--HITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~--~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
|++. ..|+++++ ++|+++ ..+.+ ....+++.+.|+++..
T Consensus 77 ~~v~-----~~Pt~~~~-~~g~~~~~~~~~g----~~~~~~l~~~l~~~~~ 117 (120)
T 1mek_A 77 YGVR-----GYPTIKFF-RNGDTASPKEYTA----GREADDIVNWLKKRTG 117 (120)
T ss_dssp HTCC-----SSSEEEEE-ESSCSSSCEECCC----CSSHHHHHHHHHTTSC
T ss_pred CCCC-----cccEEEEE-eCCCcCCcccccC----ccCHHHHHHHHHhccC
Confidence 9987 57899999 688876 55422 3467888888887643
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.9e-10 Score=78.36 Aligned_cols=93 Identities=10% Similarity=0.070 Sum_probs=67.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| ++||++|+.+.|.|.++.++++. ++.++.|..|.. .++++.|+
T Consensus 22 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~-------------------------~~~~~~~~ 74 (142)
T 1qgv_A 22 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV-------------------------PDFNKMYE 74 (142)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC-------------------------CTTTTSSC
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccC-------------------------HHHHHHcC
Confidence 4789999998 89999999999999999999864 488888887631 24567788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccC------CCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNL------NVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~------~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+++++ ++|+++....+.. ....+.+++.+.|+++.
T Consensus 75 i~-----~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~ 120 (142)
T 1qgv_A 75 LY-----DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120 (142)
T ss_dssp SC-----SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred CC-----CCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence 76 56788888 4899887653211 11123667777776654
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-10 Score=74.89 Aligned_cols=87 Identities=11% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
+++++|.|| +.||+.|+...+.+.++.+++... ++.++.|..+. +.++++.|
T Consensus 21 ~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~l~~~~ 74 (111)
T 3uvt_A 21 EGITFIKFY-APWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA-------------------------ERNICSKY 74 (111)
T ss_dssp SSEEEEEEE-CSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT-------------------------CHHHHHHT
T ss_pred CCcEEEEEE-CCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc-------------------------cHhHHHhc
Confidence 678888888 889999999999999998876543 57777777653 23467788
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
++. ..|+.+++ ++|+++..+.+. ...+++.+.|++
T Consensus 75 ~v~-----~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~ 109 (111)
T 3uvt_A 75 SVR-----GYPTLLLF-RGGKKVSEHSGG----RDLDSLHRFVLS 109 (111)
T ss_dssp TCC-----SSSEEEEE-ETTEEEEEECSC----CSHHHHHHHHHH
T ss_pred CCC-----cccEEEEE-eCCcEEEeccCC----cCHHHHHHHHHh
Confidence 886 56787777 799998877422 467788887765
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=74.91 Aligned_cols=90 Identities=7% Similarity=0.029 Sum_probs=67.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh----cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE----RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~----~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
.+++++|.|| ++||++|+...|.+.++.+++.. .++.++.|..+. +.+++
T Consensus 32 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~ 85 (127)
T 3h79_A 32 PEKDVFVLYY-VPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK-------------------------YPDVI 85 (127)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT-------------------------CHHHH
T ss_pred CCCCEEEEEE-CCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc-------------------------cHhHH
Confidence 3688999988 89999999999999999988864 246777766542 34678
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEE-EEEeccCCCCCCHHHHHHHHHhh
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQ-HITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~-~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+.|++. ..|+++++++.+++. ..+. -..+.+++.+.|+++
T Consensus 86 ~~~~v~-----~~Pt~~~~~~g~~~~~~~~~----G~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 86 ERMRVS-----GFPTMRYYTRIDKQEPFEYS----GQRYLSLVDSFVFQN 126 (127)
T ss_dssp HHTTCC-----SSSEEEEECSSCSSSCEECC----SCCCHHHHHHHHHHH
T ss_pred HhcCCc-----cCCEEEEEeCCCCCCceEec----CCccHHHHHHHHHhc
Confidence 889987 567999998777653 2231 135788888888764
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.7e-10 Score=75.68 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEEeeCC-------CCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEc
Q psy2878 37 SSFPGKWKIFYFYPKD-------FTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD 109 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~-------~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D 109 (181)
.+.+|++++|.|| ++ ||++|+...|.|.++.+++.+ ++.++.|..+... .| .|
T Consensus 20 ~~~~~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~---~~---------------~d 79 (123)
T 1wou_A 20 EQHNGKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---YW---------------KD 79 (123)
T ss_dssp HTTTTSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---HH---------------HC
T ss_pred HHhCCCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCch---hh---------------hc
Confidence 3445899999998 88 999999999999999887764 6899999987632 11 24
Q ss_pred CCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 110 TNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 110 ~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
.+..+++.|++. ..|+++++++.+++.... ..+.+++.+.|+
T Consensus 80 ~~~~~~~~~~i~-----~~Pt~~~~~~~~~~~g~~------~~~~~~l~~~i~ 121 (123)
T 1wou_A 80 PNNDFRKNLKVT-----AVPTLLKYGTPQKLVESE------CLQANLVEMLFS 121 (123)
T ss_dssp TTCHHHHHHCCC-----SSSEEEETTSSCEEEGGG------GGCHHHHHHHHH
T ss_pred hhHHHHHHCCCC-----eeCEEEEEcCCceEeccc------cCCHHHHHHHHh
Confidence 567888999987 678999998744443221 234556666554
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.7e-10 Score=83.86 Aligned_cols=91 Identities=11% Similarity=0.170 Sum_probs=69.1
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
.+||+++|.|| ++||++|+...|.+.++.++++..+ +.++.|..+. +.++++
T Consensus 30 ~~~~~v~v~F~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-------------------------~~~l~~ 83 (241)
T 3idv_A 30 ADKDTVLLEFY-APWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS-------------------------ASVLAS 83 (241)
T ss_dssp TTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT-------------------------CHHHHH
T ss_pred hcCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC-------------------------CHHHHH
Confidence 36889999998 8999999999999999999998765 7777776642 346788
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
.|++. ..|++++++ +|+++. +.+ ....+++.+.+++...
T Consensus 84 ~~~v~-----~~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~i~~~~~ 122 (241)
T 3idv_A 84 RFDVS-----GYPTIKILK-KGQAVD-YEG----SRTQEEIVAKVREVSQ 122 (241)
T ss_dssp HTTCC-----SSSEEEEEE-TTEEEE-CCS----CSCHHHHHHHHHHHHS
T ss_pred hcCCC-----cCCEEEEEc-CCCccc-ccC----cccHHHHHHHHhhccC
Confidence 89987 567888885 677663 321 3566777777776543
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=79.51 Aligned_cols=108 Identities=10% Similarity=0.003 Sum_probs=68.3
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHH---HHHHHHHHHhcCcEEEEEecCCH-HHHHHHHHHcCCCcccceeEE
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISE---YNKLVKDFNERNAILLGGSSDNE-FVKLAWRRENSNLYKLNHWQF 107 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~---l~~l~~~~~~~~~~vi~Is~d~~-~~~~~~~~~~~~~~~~~~~~~ 107 (181)
+.+..+..+||+++|.|| ++||+.|+.+.+. ..++.+.+.+ ++.++.|..+.. +....|..
T Consensus 30 ea~~~A~~~~KpVlvdF~-A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~------------- 94 (173)
T 3ira_A 30 EAFEKARKENKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMT------------- 94 (173)
T ss_dssp HHHHHHHHHTCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHH-------------
T ss_pred HHHHHHHHhCCCEEEecc-cchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHH-------------
Confidence 455566667899999999 8999999987763 2445555544 577777776642 22222221
Q ss_pred EcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCC----CCCCHHHHHHHHHhh
Q psy2878 108 SDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLN----VGRNPIETLRILDAI 164 (181)
Q Consensus 108 ~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~----~~~~~~~ll~~l~~l 164 (181)
.+...+|+. .+|+++++|++|++++...+-.. ......++++.+.++
T Consensus 95 -----~~q~~~gv~-----g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~ 145 (173)
T 3ira_A 95 -----VCQIILGRG-----GWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEI 145 (173)
T ss_dssp -----HHHHHHSCC-----CSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHH
T ss_pred -----HHHHHcCCC-----CCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHH
Confidence 122235765 56799999999999987532111 123466666666543
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-09 Score=73.08 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=58.8
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.++++++|+|| ++||++|+...|.+.++.+++...++.++.|..+... ++++.|
T Consensus 24 ~~~~~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-------------------------~~~~~~ 77 (137)
T 2dj0_A 24 DKRVTWIVEFF-ANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT-------------------------DVSTRY 77 (137)
T ss_dssp STTSCEEEEEC-CTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCH-------------------------HHHHHT
T ss_pred CCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCH-------------------------HHHHHc
Confidence 35568999998 8999999999999999999997667888888776422 233444
Q ss_pred CCCCCCC-cceeeEEEEcCCCcEEEEEec
Q psy2878 119 GIRHETG-VALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 119 gv~~~~g-~~~p~~~liD~~g~i~~~~~~ 146 (181)
++....+ ...|+++++ ++|+++.++.+
T Consensus 78 ~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G 105 (137)
T 2dj0_A 78 KVSTSPLTKQLPTLILF-QGGKEAMRRPQ 105 (137)
T ss_dssp TCCCCSSSSCSSEEEEE-SSSSEEEEESC
T ss_pred cCcccCCcCCCCEEEEE-ECCEEEEEecC
Confidence 4420000 135788888 79999988754
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.4e-11 Score=78.56 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=56.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|+|| +.||+.|....+.+.++.+++.. ++.++.|+.+. +.++++.|+
T Consensus 18 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------------------~~~~~~~~~ 70 (106)
T 2yj7_A 18 SDKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE-------------------------NPNTAAQYG 70 (106)
Confidence 4678888888 88999999999999999988875 47777766543 234666778
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEe
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~ 145 (181)
+. ..|+++++ ++|+++..+.
T Consensus 71 v~-----~~Pt~~~~-~~g~~~~~~~ 90 (106)
T 2yj7_A 71 IR-----SIPTLLLF-KNGQVVDRLV 90 (106)
Confidence 76 56788888 7999987774
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-10 Score=77.64 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=64.7
Q ss_pred CCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 39 FPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 39 ~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
..+|+++|+|| +.||+.|....+.|.++.+++. ++.++.|+.+. +.++++.|
T Consensus 34 ~~~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------------------------~~~~~~~~ 85 (130)
T 1wmj_A 34 EAGKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE-------------------------LKEVAEKY 85 (130)
T ss_dssp TTTCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT-------------------------SGGGHHHH
T ss_pred hcCCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc-------------------------hHHHHHHc
Confidence 35888988888 8999999999999999988876 68888877642 34678889
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++. ..|+.+++ ++|+++..+.+ . ..+++.+.|+++.
T Consensus 86 ~v~-----~~Pt~~~~-~~g~~~~~~~g-~----~~~~l~~~l~~~~ 121 (130)
T 1wmj_A 86 NVE-----AMPTFLFI-KDGAEADKVVG-A----RKDDLQNTIVKHV 121 (130)
T ss_dssp TCC-----SSCCCCBC-TTTTCCBCCCT-T----CTTTHHHHHHHHT
T ss_pred CCC-----ccceEEEE-eCCeEEEEEeC-C----CHHHHHHHHHHHH
Confidence 986 56676555 89999877632 1 2345555555444
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-09 Score=66.16 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=58.2
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCC
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE 123 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 123 (181)
.++.|| +.||+.|....+.+.++.+++.+ ++.++.|..+. +.++++.||+.
T Consensus 4 ~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~v~-- 54 (85)
T 1nho_A 4 NIEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV-------------------------DREKAIEYGLM-- 54 (85)
T ss_dssp CEEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT-------------------------CGGGGGGTCSS--
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCC-------------------------CHHHHHhCCce--
Confidence 467777 89999999999999999988864 58888888752 23567788886
Q ss_pred CCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 124 TGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 124 ~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
..|++++ +|++ .+.+. .+.+++.+.|+++
T Consensus 55 ---~~Pt~~~---~G~~--~~~G~----~~~~~l~~~l~~~ 83 (85)
T 1nho_A 55 ---AVPAIAI---NGVV--RFVGA----PSREELFEAINDE 83 (85)
T ss_dssp ---CSSEEEE---TTTE--EEECS----SCCHHHHHHHHHH
T ss_pred ---eeCEEEE---CCEE--EEccC----CCHHHHHHHHHHH
Confidence 5678777 8998 33221 2446677766654
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-10 Score=80.84 Aligned_cols=96 Identities=5% Similarity=-0.093 Sum_probs=61.6
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHHHHHH--HHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEYNKLV--KDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~--~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
+...||+++|.|| ++||++|+...+.+.+.- .++.+ ..++.|..|... ..+
T Consensus 40 A~~~~KpVlV~F~-A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e~------------------------~~~ 92 (151)
T 3ph9_A 40 AQKSKKPLMVIHH-LEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHET------------------------TDK 92 (151)
T ss_dssp HHHHTCCEEEEEC-CTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSCC------------------------SCG
T ss_pred HHHcCCcEEEEEE-CCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCCc------------------------hhh
Confidence 3346899999999 999999999998887642 22222 345566665210 001
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHhh
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDAI 164 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~l 164 (181)
+..|++. ..|+++++|++|+++....+.... ..+.+++++.+++.
T Consensus 93 ~~~~~v~-----~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a 143 (151)
T 3ph9_A 93 NLSPDGQ-----YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKA 143 (151)
T ss_dssp GGCTTCC-----CSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred HhhcCCC-----CCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence 2345544 567999999999999887643111 23466777776654
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-09 Score=66.36 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=58.5
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
.++++.|| +.|||.|....+.+.++.+++.+ ++.++.|+.+. +.++++.||+.
T Consensus 3 ~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~v~ 55 (85)
T 1fo5_A 3 KVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVME-------------------------NPQKAMEYGIM 55 (85)
T ss_dssp CEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSS-------------------------SCCTTTSTTTC
T ss_pred ceEEEEEe-CCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCC-------------------------CHHHHHHCCCc
Confidence 45677777 89999999999999999888763 68888888753 23566778876
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
..|++++ +|++ .+.+ . .+.+++.+.|+++
T Consensus 56 -----~~Pt~~~---~G~~--~~~G-~---~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 56 -----AVPTIVI---NGDV--EFIG-A---PTKEALVEAIKKR 84 (85)
T ss_dssp -----CSSEEEE---TTEE--ECCS-S---SSSHHHHHHHHHH
T ss_pred -----ccCEEEE---CCEE--eeec-C---CCHHHHHHHHHHh
Confidence 5677777 8988 3322 1 2456677766643
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-09 Score=74.00 Aligned_cols=87 Identities=10% Similarity=0.132 Sum_probs=65.6
Q ss_pred CeEEEEEeeCCCC--CCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 42 KWKIFYFYPKDFT--FVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 42 k~~ll~F~~~~~c--p~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++||.|| +.|| ++|+...|.|.++.++|.. .+.++-|..|. +.+++.+||
T Consensus 34 ~~vlVdF~-A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe-------------------------~~~la~~yg 86 (137)
T 2qsi_A 34 KIVVLFFR-GDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEA-------------------------ERGLMARFG 86 (137)
T ss_dssp SEEEEEEC-CCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGG-------------------------HHHHHHHHT
T ss_pred CcEEEEEe-CCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCC-------------------------CHHHHHHcC
Confidence 48888888 7799 9999999999999999864 47777777664 246777899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. +.|+.+++ ++|+++.+..+. ..-+++.+.|+++.
T Consensus 87 V~-----siPTlilF-kdG~~v~~~vG~----~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 87 VA-----VCPSLAVV-QPERTLGVIAKI----QDWSSYLAQIGAML 122 (137)
T ss_dssp CC-----SSSEEEEE-ECCEEEEEEESC----CCHHHHHHHHHHHH
T ss_pred Cc-----cCCEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHHHh
Confidence 97 67899888 799999999642 22345555554443
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.4e-09 Score=88.06 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=72.7
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE--RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~--~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
+++++|.|| ++||++|+.++|.+.++++++.+ .++.++.|+.+. |.+.++++.|
T Consensus 30 ~k~vlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~-----------------------d~~~~l~~~~ 85 (519)
T 3t58_A 30 SSAWAVEFF-ASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE-----------------------ETNSAVCREF 85 (519)
T ss_dssp SSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS-----------------------GGGHHHHHHT
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc-----------------------cccHHHHHHc
Confidence 588999998 89999999999999999999986 368888888764 2245788899
Q ss_pred CCCCCCCcceeeEEEEcC---CCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 119 GIRHETGVALRATFIFDP---QNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~---~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++. ..|+++++++ +|+++....+. .+.+++.+.|+++.
T Consensus 86 ~V~-----~~PTl~~f~~g~~~G~~~~~~~g~----~~~~~L~~~l~~~l 126 (519)
T 3t58_A 86 NIA-----GFPTVRFFQAFTKNGSGATLPGAG----ANVQTLRMRLIDAL 126 (519)
T ss_dssp TCC-----SBSEEEEECTTCCSCCCEEECCSS----CCHHHHHHHHHHHH
T ss_pred CCc-----ccCEEEEEcCcccCCCceeEecCC----CCHHHHHHHHHHHH
Confidence 987 6789999997 77766655322 56777777776554
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=75.51 Aligned_cols=88 Identities=13% Similarity=-0.010 Sum_probs=65.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh---cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE---RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~---~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
++.++|.|| ++||++|+...|.+.++.+++.+ .++.++.|..+. +.++++.
T Consensus 134 ~~~~~v~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 187 (226)
T 1a8l_A 134 QDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-------------------------YPEWADQ 187 (226)
T ss_dssp SCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-------------------------CHHHHHH
T ss_pred CCcEEEEEe-CCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc-------------------------CHHHHHh
Confidence 344478887 99999999999999999999984 368888887652 3457788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
|++. ..|+++++ ++|+++..+.+. ...+++.+.|+++
T Consensus 188 ~~v~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 188 YNVM-----AVPKIVIQ-VNGEDRVEFEGA----YPEKMFLEKLLSA 224 (226)
T ss_dssp TTCC-----SSCEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred CCCc-----ccCeEEEE-eCCceeEEEcCC----CCHHHHHHHHHHh
Confidence 9987 56786666 699988777432 3456677777654
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=74.10 Aligned_cols=89 Identities=11% Similarity=0.214 Sum_probs=65.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+||++||+|| ++||++|....|.|.++.+++. ++.++.|..+... +.|+
T Consensus 29 ~~~~vvv~f~-a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~~----------------------------~~~~ 77 (135)
T 2dbc_A 29 KDLWVVIHLY-RSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCI----------------------------EHYH 77 (135)
T ss_dssp SSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSSC----------------------------SSCC
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcCc----------------------------ccCC
Confidence 3578999998 8999999999999999988874 5788888766420 3567
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCC---CCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNV---GRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~---~~~~~~ll~~l~~l~ 165 (181)
+. ..|+.++++ +|+++.++.+.... ....+++.+.|++..
T Consensus 78 i~-----~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 78 DN-----CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp SS-----CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred CC-----CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 65 567888886 99999888643222 125677777777654
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.3e-09 Score=74.13 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=55.6
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.+++||.|| ++||++|+...|.|.++.+++.+ .+.|+-|.+|. ..+++..|++
T Consensus 41 ~k~VVVdF~-A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe-------------------------~~e~a~~y~V 93 (160)
T 2av4_A 41 ERLVCIRFG-HDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITE-------------------------VPDFNTMYEL 93 (160)
T ss_dssp SSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT-------------------------CCTTTTTTTC
T ss_pred CCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCC-------------------------CHHHHHHcCC
Confidence 478999998 99999999999999999999864 37787777764 2456778888
Q ss_pred CCCCCcceeeEEEEcCCCcEEE
Q psy2878 121 RHETGVALRATFIFDPQNIIQH 142 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~ 142 (181)
. ..|+.+++ ++|+.+.
T Consensus 94 ~-----siPT~~fF-k~G~~v~ 109 (160)
T 2av4_A 94 Y-----DPVSVMFF-YRNKHMM 109 (160)
T ss_dssp C-----SSEEEEEE-ETTEEEE
T ss_pred C-----CCCEEEEE-ECCEEEE
Confidence 7 66788777 6888874
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-09 Score=73.74 Aligned_cols=90 Identities=11% Similarity=0.106 Sum_probs=66.8
Q ss_pred CCCeEEEEEeeCCC--CCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDF--TFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~--cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.++++||+|| +.| |++|+...|.|.++.++|..+.+.|+-|.+|. +.+++.+
T Consensus 33 ~~~~vlVdF~-a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe-------------------------~~~lA~~ 86 (140)
T 2qgv_A 33 QAPDGVVLLS-SDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ-------------------------SEAIGDR 86 (140)
T ss_dssp TCSSEEEEEC-CCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH-------------------------HHHHHHH
T ss_pred CCCCEEEEEe-CCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC-------------------------CHHHHHH
Confidence 4567888776 777 99999999999999999875337777666553 2467788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
||+. +.|+.+++ ++|+++.+..+. ..-+++.+.|+++.
T Consensus 87 ygV~-----sIPTlilF-k~G~~v~~~~G~----~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 87 FGAF-----RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLV 124 (140)
T ss_dssp HTCC-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHH
T ss_pred cCCc-----cCCEEEEE-ECCEEEEEEecC----CCHHHHHHHHHHHh
Confidence 9998 67788888 799999998642 23456666666554
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.9e-09 Score=78.40 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=68.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE--RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~--~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.+++++|.|| ++||++|+...|.+.++++++.+ .++.++.|+.+. |.+.++++.
T Consensus 29 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~-----------------------~~~~~l~~~ 84 (244)
T 3q6o_A 29 SRSAWAVEFF-ASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE-----------------------ETNSAVCRD 84 (244)
T ss_dssp CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS-----------------------TTTHHHHHH
T ss_pred CCCeEEEEEE-CCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc-----------------------hhhHHHHHH
Confidence 3588989988 89999999999999999999986 468888888653 124678888
Q ss_pred hCCCCCCCcceeeEEEEcCCC-----cEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 118 LGIRHETGVALRATFIFDPQN-----IIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g-----~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
|++. ..|+.+++++.+ +.+ .. .+.+.+++.+.|.++.
T Consensus 85 ~~v~-----~~Pt~~~~~~g~~~~~g~~~-~~-----~g~~~~~l~~~i~~~l 126 (244)
T 3q6o_A 85 FNIP-----GFPTVRFFXAFTXNGSGAVF-PV-----AGADVQTLRERLIDAL 126 (244)
T ss_dssp TTCC-----SSSEEEEECTTCCSSSCEEC-CC-----TTCCHHHHHHHHHHHH
T ss_pred cCCC-----ccCEEEEEeCCCcCCCCeeE-ec-----CCCCHHHHHHHHHHHH
Confidence 9987 678999998633 332 11 1246777777776553
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-09 Score=74.04 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=56.7
Q ss_pred CeEEEEEeeCCC--CCCChhHHHHHHHHHHHHHhcCcE--EEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 42 KWKIFYFYPKDF--TFVCPTEISEYNKLVKDFNERNAI--LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 42 k~~ll~F~~~~~--cp~C~~~~~~l~~l~~~~~~~~~~--vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
+.+||+|+ +.| |++|+...|.|.++.+++ . ++. ++.|+.|. +.++++.
T Consensus 35 ~~~vv~f~-~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~-------------------------~~~la~~ 86 (142)
T 2es7_A 35 GDGVILLS-SDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQ-------------------------SEAIGDR 86 (142)
T ss_dssp CSEEEEEC-CCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHH-------------------------HHHHHHT
T ss_pred CCEEEEEE-CCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCC-------------------------CHHHHHh
Confidence 44666666 545 999999999999999988 3 577 88887652 2357788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
|++. ..|+++++ ++|+++.++.+. ...+++.+.|+++.
T Consensus 87 ~~V~-----~iPT~~~f-k~G~~v~~~~G~----~~~~~l~~~i~~~l 124 (142)
T 2es7_A 87 FNVR-----RFPATLVF-TDGKLRGALSGI----HPWAELLTLMRSIV 124 (142)
T ss_dssp TTCC-----SSSEEEEE-SCC----CEESC----CCHHHHHHHHHHHH
T ss_pred cCCC-----cCCeEEEE-eCCEEEEEEeCC----CCHHHHHHHHHHHh
Confidence 9987 67899999 899999887532 34567777776654
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=68.10 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=59.8
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|+|+ ++||++|....+.|.++.++ .++.++-|.+|....+ ..+++..|||
T Consensus 24 ~~~vvi~kh-atwCgpc~~~~~~~e~~~~~---~~v~~~~vdVde~r~~---------------------Sn~IA~~~~V 78 (112)
T 3iv4_A 24 NKYVFVLKH-SETCPISANAYDQFNKFLYE---RDMDGYYLIVQQERDL---------------------SDYIAKKTNV 78 (112)
T ss_dssp CSEEEEEEE-CTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGGGGHHH---------------------HHHHHHHHTC
T ss_pred CCCEEEEEE-CCcCHhHHHHHHHHHHHhcc---CCceEEEEEeecCchh---------------------hHHHHHHhCC
Confidence 678888887 99999999999999998873 4688888887753221 2467888998
Q ss_pred CCCCCcc-eeeEEEEcCCCcEEEEEec
Q psy2878 121 RHETGVA-LRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 121 ~~~~g~~-~p~~~liD~~g~i~~~~~~ 146 (181)
. + .|+.+|+ ++|++++....
T Consensus 79 ~-----h~sPq~il~-k~G~~v~~~SH 99 (112)
T 3iv4_A 79 K-----HESPQAFYF-VNGEMVWNRDH 99 (112)
T ss_dssp C-----CCSSEEEEE-ETTEEEEEEEG
T ss_pred c-----cCCCeEEEE-ECCEEEEEeec
Confidence 7 5 6899999 79999999853
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.8e-08 Score=74.88 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=64.8
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh---cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE---RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~---~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
++.|+.+++.|| +.||++|+...|.+.++..++.+ .++.+..|..+. +.++
T Consensus 135 ~~~~~~~vv~F~-a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~-------------------------~~~~ 188 (243)
T 2hls_A 135 SLKGRVHIETII-TPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE-------------------------NPDI 188 (243)
T ss_dssp HCCSCEEEEEEE-CSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT-------------------------CHHH
T ss_pred HcCCCcEEEEEE-CCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc-------------------------CHHH
Confidence 356777788887 89999999999999999999853 467777776542 2356
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++.|++. ..|++++ +|++++.. . ...+++++.|++..
T Consensus 189 ~~~~~V~-----~vPt~~i---~G~~~~~G--~----~~~~~l~~~l~~~~ 225 (243)
T 2hls_A 189 ADKYGVM-----SVPSIAI---NGYLVFVG--V----PYEEDFLDYVKSAA 225 (243)
T ss_dssp HHHTTCC-----SSSEEEE---TTEEEEES--C----CCHHHHHHHHHHHH
T ss_pred HHHcCCe-----eeCeEEE---CCEEEEeC--C----CCHHHHHHHHHHHh
Confidence 7788887 5678877 78876222 2 45678888887654
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-08 Score=78.00 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=69.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||++|....|.+.++.+++... +.++.|..|.. .+.++++.|+
T Consensus 34 ~~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~~-----------------------~~~~l~~~~~ 88 (298)
T 3ed3_A 34 TNYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLN-----------------------KNKALCAKYD 88 (298)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTST-----------------------TTHHHHHHTT
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccCc-----------------------cCHHHHHhCC
Confidence 4678999998 899999999999999999998753 88999988832 1457888899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEec-------------cCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVN-------------NLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~-------------~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|+++++++ |+++....+ ...-.+..+.+++.+.+...
T Consensus 89 I~-----~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~ 142 (298)
T 3ed3_A 89 VN-----GFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR 142 (298)
T ss_dssp CC-----BSSEEEEEEC-CCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred CC-----ccceEEEEEC-CceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence 87 5679999974 553221110 11223678899988876653
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=77.40 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=67.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+|+++||.|| ++||++|....|.|.++.+++. ++.|+.|..+. . .+++.|+
T Consensus 132 ~~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~--------~------------------~l~~~~~ 182 (245)
T 1a0r_P 132 KITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN--------T------------------GAGDRFS 182 (245)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH--------H------------------CCTTSSC
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc--------H------------------HHHHHCC
Confidence 4788999998 8999999999999999999886 58888887642 0 1234567
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCC---CCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLN---VGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~---~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+++++. +|+++..+++... .....+++...|.+..
T Consensus 183 I~-----~~PTll~~~-~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g 225 (245)
T 1a0r_P 183 SD-----VLPTLLVYK-GGELLSNFISVTEQLAEEFFTGDVESFLNEYG 225 (245)
T ss_dssp TT-----TCSEEEEEE-TTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred CC-----CCCEEEEEE-CCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence 65 567887775 9999988864322 2245677878887654
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=71.47 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=68.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.+++++|.|| +.||++|+...|.+.++.+++..++ +.++.|..+. +.++++.
T Consensus 146 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 199 (241)
T 3idv_A 146 DADIILVEFY-APWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-------------------------ETDLAKR 199 (241)
T ss_dssp HCSEEEEEEE-CTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT-------------------------CHHHHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC-------------------------CHHHHHH
Confidence 4578888888 8999999999999999999998754 7777776653 2357788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
|++. ..|+.++++ +|+.+. +.+ ....+++++.|++..
T Consensus 200 ~~v~-----~~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 200 FDVS-----GYPTLKIFR-KGRPYD-YNG----PREKYGIVDYMIEQS 236 (241)
T ss_dssp TTCC-----SSSEEEEEE-TTEEEE-CCS----CCSHHHHHHHHHHHT
T ss_pred cCCc-----ccCEEEEEE-CCeEEE-ecC----CCCHHHHHHHHHhhh
Confidence 9987 567888886 687765 311 357888888887654
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=59.23 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=46.2
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET 124 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~ 124 (181)
.|.|| ++||++|+...+.+.++.+++.. ++.++.|. +.++++.||+.
T Consensus 3 ~v~f~-a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~----------------------------~~~~~~~~~v~--- 49 (77)
T 1ilo_A 3 KIQIY-GTGCANCQMLEKNAREAVKELGI-DAEFEKIK----------------------------EMDQILEAGLT--- 49 (77)
T ss_dssp EEEEE-CSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC----------------------------SHHHHHHHTCS---
T ss_pred EEEEE-cCCChhHHHHHHHHHHHHHHcCC-ceEEEEec----------------------------CHHHHHHCCCC---
Confidence 47777 67999999999999999887753 46666554 24677788887
Q ss_pred CcceeeEEEEcCCCcEEEE
Q psy2878 125 GVALRATFIFDPQNIIQHI 143 (181)
Q Consensus 125 g~~~p~~~liD~~g~i~~~ 143 (181)
..|++++ +|+++..
T Consensus 50 --~~Pt~~~---~G~~~~~ 63 (77)
T 1ilo_A 50 --ALPGLAV---DGELKIM 63 (77)
T ss_dssp --SSSCEEE---TTEEEEC
T ss_pred --cCCEEEE---CCEEEEc
Confidence 5677777 8998755
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-09 Score=72.89 Aligned_cols=89 Identities=7% Similarity=-0.007 Sum_probs=59.5
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCC
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTN 111 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~ 111 (181)
+.++|+++.||.+||.|| ++||++|....|.|.++.+++. .+-+..+.. .+.+
T Consensus 3 ~~~~la~~~~k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~---------------------~~~~ 55 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQVP-----YVECSPNGP---------------------GTPQ 55 (106)
T ss_dssp HHHHHHHHHHHHTCEEEE-CTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCT---------------------TSCC
T ss_pred HhhHHHHhcCCCEEEEEE-CCCCHHHHHHHHHHHHHHHhCC-----EEEEecccc---------------------cchh
Confidence 557778888888888888 8999999999999988775442 233322211 0235
Q ss_pred chHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 112 GSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 112 ~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
.++++.|++. ..|+.++ +|+. +.+ ....+++.+.+.
T Consensus 56 ~~l~~~~~V~-----~~PT~~i---~G~~---~~G----~~~~~~l~~~~~ 91 (106)
T 3kp8_A 56 AQECTEAGIT-----SYPTWII---NGRT---YTG----VRSLEALAVASG 91 (106)
T ss_dssp CHHHHHTTCC-----SSSEEEE---TTEE---EES----CCCHHHHHHHHT
T ss_pred HHHHHHcCCe-----EeCEEEE---CCEE---ecC----CCCHHHHHHHhC
Confidence 7889999997 5567555 7874 221 245666666653
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-08 Score=81.95 Aligned_cols=91 Identities=13% Similarity=0.217 Sum_probs=68.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.||+++|.|| ++||++|+.++|.+.++.+++++. ++.++.|..+.. ++++.|
T Consensus 369 ~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~--------------------------~~~~~~ 421 (481)
T 3f8u_A 369 ENKDVLIEFY-APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN--------------------------DVPSPY 421 (481)
T ss_dssp TTCEEEEEEE-CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS--------------------------CCCTTC
T ss_pred CCCcEEEEEe-cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch--------------------------hhHhhC
Confidence 4789999998 899999999999999999999875 566666665431 233567
Q ss_pred CCCCCCCcceeeEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 119 GIRHETGVALRATFIFDPQNII-QHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i-~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++. ..|+++++++.|++ ...+.+ ....+++++.|++...
T Consensus 422 ~v~-----~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~~~~ 461 (481)
T 3f8u_A 422 EVR-----GFPTIYFSPANKKLNPKKYEG----GRELSDFISYLQREAT 461 (481)
T ss_dssp CCC-----SSSEEEEECTTCTTSCEECCS----CCSHHHHHHHHHHHCS
T ss_pred CCc-----ccCEEEEEeCCCeEeeeEeCC----CCCHHHHHHHHHHhcC
Confidence 776 56799999988874 333322 2678899999987754
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-07 Score=75.10 Aligned_cols=91 Identities=9% Similarity=0.140 Sum_probs=69.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-----cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-----RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-----~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
.+++++|.|| +.||++|....|.+.++.+++++ .++.++.|..+. +.++
T Consensus 21 ~~~~vlV~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~-------------------------~~~l 74 (382)
T 2r2j_A 21 NADVALVNFY-ADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ-------------------------HSDI 74 (382)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT-------------------------CHHH
T ss_pred cCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc-------------------------cHHH
Confidence 4688888888 89999999999999999999963 247777777552 3578
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEE-EeccCCCCCCHHHHHHHHHhhcc
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHI-TVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~-~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++.|++. ..|+++++ ++|+++.+ +.+ ....+++.+.+++...
T Consensus 75 ~~~~~v~-----~~Pt~~~f-~~G~~~~~~~~G----~~~~~~l~~~i~~~~~ 117 (382)
T 2r2j_A 75 AQRYRIS-----KYPTLKLF-RNGMMMKREYRG----QRSVKALADYIRQQKS 117 (382)
T ss_dssp HHHTTCC-----EESEEEEE-ETTEEEEEECCS----CCSHHHHHHHHHHHHS
T ss_pred HHhcCCC-----cCCEEEEE-eCCcEeeeeecC----cchHHHHHHHHHHhcc
Confidence 8889987 56787776 58998764 322 3567888888876653
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=74.26 Aligned_cols=89 Identities=6% Similarity=0.028 Sum_probs=65.8
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHH-------HHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCc
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISE-------YNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNG 112 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~-------l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 112 (181)
.+++++|.|| ++||+ |...+|. +.++.++++..++.+..|..+. +.
T Consensus 27 ~~~~~lV~F~-a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~-------------------------~~ 79 (350)
T 1sji_A 27 KYDVLCLYYH-ESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK-------------------------EA 79 (350)
T ss_dssp TCSEEEEEEE-CCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT-------------------------TH
T ss_pred hCCeEEEEEE-CCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC-------------------------CH
Confidence 4678888888 99999 9888888 7777777766678888887654 24
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
++++.|++. ..|+++++ ++|++. .+.+ ....+++.+.+++...
T Consensus 80 ~l~~~~~v~-----~~Pt~~~~-~~g~~~-~~~G----~~~~~~l~~~i~~~~~ 122 (350)
T 1sji_A 80 KLAKKLGFD-----EEGSLYVL-KGDRTI-EFDG----EFAADVLVEFLLDLIE 122 (350)
T ss_dssp HHHHHHTCC-----STTEEEEE-ETTEEE-EECS----CCCHHHHHHHHHTTSS
T ss_pred HHHHhcCCC-----ccceEEEE-ECCcEE-EecC----CCCHHHHHHHHHHhcC
Confidence 677889987 56788888 688843 3422 2567888888876654
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.57 E-value=8.6e-08 Score=72.35 Aligned_cols=90 Identities=9% Similarity=0.036 Sum_probs=65.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+|+++||.|| +.||++|....|.|.++.+++. ++.++.|..+ . ..+++.|+
T Consensus 119 ~~k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~-~-------------------------~~l~~~~~ 169 (217)
T 2trc_P 119 KVTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS-N-------------------------TGAGDRFS 169 (217)
T ss_dssp TTCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH-H-------------------------HTCSTTSC
T ss_pred CCcEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC-c-------------------------HHHHHHCC
Confidence 4688999998 8999999999999999988884 6888888764 1 11334566
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCC---CCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLN---VGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~---~~~~~~~ll~~l~~l 164 (181)
+. ..|+++++ ++|+++..+.+... .....+++.+.|.+.
T Consensus 170 i~-----~~PTl~~~-~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 170 SD-----VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp GG-----GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred CC-----CCCEEEEE-ECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 65 56788888 49999988853222 123357777777654
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=78.17 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=70.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||++|....|.+.++.+++...++.++.|..+. +..+++.||
T Consensus 30 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~ 83 (504)
T 2b5e_A 30 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-------------------------NQDLCMEHN 83 (504)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred cCCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC-------------------------CHHHHHhcC
Confidence 4678888888 89999999999999999999987678998888553 245788899
Q ss_pred CCCCCCcceeeEEEEcCCCcE--EEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDPQNII--QHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i--~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|+++++. +|+. +..+.+ ....+.+.+.+++...
T Consensus 84 v~-----~~Pt~~~~~-~g~~~~~~~~~G----~~~~~~l~~~l~~~~~ 122 (504)
T 2b5e_A 84 IP-----GFPSLKIFK-NSDVNNSIDYEG----PRTAEAIVQFMIKQSQ 122 (504)
T ss_dssp CC-----SSSEEEEEE-TTCTTCEEECCS----CCSHHHHHHHHHHHTS
T ss_pred CC-----cCCEEEEEe-CCccccceeecC----CCCHHHHHHHHHHhcC
Confidence 87 567888885 6775 544422 3677888888876654
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.7e-07 Score=68.10 Aligned_cols=83 Identities=13% Similarity=0.062 Sum_probs=57.6
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++.+++.|| +.||++|+...+.+.++..++. ++.++.|..+. +.++++.|++
T Consensus 136 ~~~~~v~F~-a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~-------------------------~~~l~~~~~v 187 (229)
T 2ywm_A 136 IPIEIWVFV-TTSCGYCPSAAVMAWDFALAND--YITSKVIDASE-------------------------NQDLAEQFQV 187 (229)
T ss_dssp SCEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGG-------------------------CHHHHHHTTC
T ss_pred CCeEEEEEE-CCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCC-------------------------CHHHHHHcCC
Confidence 344466677 8999999999999999988873 68888777642 3457788998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. ..|++++ +|++ ..+.+. ...+++.+.|+++
T Consensus 188 ~-----~~Pt~~~---~G~~-~~~~G~----~~~~~l~~~l~~~ 218 (229)
T 2ywm_A 188 V-----GVPKIVI---NKGV-AEFVGA----QPENAFLGYIMAV 218 (229)
T ss_dssp C-----SSSEEEE---GGGT-EEEESC----CCHHHHHHHHHHH
T ss_pred c-----ccCEEEE---CCEE-EEeeCC----CCHHHHHHHHHHH
Confidence 7 5678777 7884 334322 3445666666544
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-07 Score=76.10 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=69.5
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|+...|.+.++.+++.+. +.++.|..+. +..+++.||+
T Consensus 21 ~~~~lv~F~-a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~-------------------------~~~l~~~~~v 73 (481)
T 3f8u_A 21 AGLMLVEFF-APWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA-------------------------NTNTCNKYGV 73 (481)
T ss_dssp SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT-------------------------CHHHHHHTTC
T ss_pred CCeEEEEEE-CCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC-------------------------CHHHHHhcCC
Confidence 478888888 999999999999999999999865 7888887654 3467788998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
. ..|+.+++ ++|+++..+.+ ....+++.+.+++...
T Consensus 74 ~-----~~Ptl~~~-~~g~~~~~~~G----~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 74 S-----GYPTLKIF-RDGEEAGAYDG----PRTADGIVSHLKKQAG 109 (481)
T ss_dssp C-----EESEEEEE-ETTEEEEECCS----CSSHHHHHHHHHHHTS
T ss_pred C-----CCCEEEEE-eCCceeeeecC----ccCHHHHHHHHHhhcc
Confidence 7 66777777 68987766632 2567888888876654
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-07 Score=67.80 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=37.8
Q ss_pred eeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 32 ~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
....+.+..++++|+.|| ..|||+|....+.|.++.+++.+.++.+..+..
T Consensus 13 ~~~~~G~~~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~ 63 (175)
T 3gyk_A 13 NAPVLGNPEGDVTVVEFF-DYNCPYCRRAMAEVQGLVDADPNVRLVYREWPI 63 (175)
T ss_dssp TSCEEECTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred CCCCcCCCCCCEEEEEEE-CCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCC
Confidence 445667777888888887 889999999999999998887643344444443
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-07 Score=79.83 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=70.0
Q ss_pred cCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 36 ESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 36 l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
+.++.|++++|.|| ++||++|...+|.|.+++++++. ++.++.|..+.. ..++
T Consensus 450 ~~~~~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~-------------------------~~~~ 502 (780)
T 3apo_A 450 FPASDKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIH-------------------------EGLC 502 (780)
T ss_dssp SCTTCCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-------------------------HHHH
T ss_pred HHHcCCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCC-------------------------HHHH
Confidence 44457889999998 88999999999999999999975 588888887632 2367
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+.||+. ..|++++++ +|++ +.+.+ ....+++.+.++++..
T Consensus 503 ~~~~v~-----~~Pt~~~~~-~g~~-~~~~g----~~~~~~l~~fi~~~~~ 542 (780)
T 3apo_A 503 NMYNIQ-----AYPTTVVFN-QSSI-HEYEG----HHSAEQILEFIEDLRN 542 (780)
T ss_dssp HHTTCC-----SSSEEEEEE-TTEE-EEECS----CSCHHHHHHHHHHHHS
T ss_pred HHcCCC-----cCCeEEEEc-CCce-eeecC----cccHHHHHHHHHhhcc
Confidence 788886 467999994 6876 44422 2456778777776654
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=62.47 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=61.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
.||+++|+|+ +.||+.|...-... .++.+.+. +++.++-+..+.++. ..+.+
T Consensus 41 ~~K~vlvd~~-a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~~~~~~-----------------------~~l~~ 95 (153)
T 2dlx_A 41 QNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHDSEEG-----------------------QRYIQ 95 (153)
T ss_dssp HTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESSSHHH-----------------------HHHHH
T ss_pred cCCeEEEEEE-CCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEecCCHhH-----------------------HHHHH
Confidence 4899999998 88999998765544 34444443 367777777765321 23345
Q ss_pred HhCCCCCCCcceeeEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 117 QLGIRHETGVALRATFIFDPQ-NIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~-g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
.|++. ..|++++||++ |+.+... .. .+.+++++.|++..
T Consensus 96 ~y~v~-----~~P~~~fld~~~G~~l~~~-~g----~~~~~fl~~L~~~l 135 (153)
T 2dlx_A 96 FYKLG-----DFPYVSILDPRTGQKLVEW-HQ----LDVSSFLDQVTGFL 135 (153)
T ss_dssp HHTCC-----SSSEEEEECTTTCCCCEEE-SS----CCHHHHHHHHHHHH
T ss_pred HcCCC-----CCCEEEEEeCCCCcEeeec-CC----CCHHHHHHHHHHHH
Confidence 67775 46799999999 8776654 21 47778777776554
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.8e-07 Score=61.78 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=64.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++++||.|| +.||++|+...|.|.++.+++. ++.++-|..|.. +..|++
T Consensus 23 ~~~vvv~F~-a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~----------------------------~~~~~v 71 (118)
T 3evi_A 23 DVWVIIHLY-RSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSC----------------------------IQHYHD 71 (118)
T ss_dssp TCEEEEEEE-CTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGT----------------------------STTCCG
T ss_pred CCeEEEEEe-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHh----------------------------HHHCCC
Confidence 358989888 8999999999999999998886 588888877641 134666
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCC---CCCHHHHHHHHHh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNV---GRNPIETLRILDA 163 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~---~~~~~~ll~~l~~ 163 (181)
. ..|+.+++ ++|+.+.+..+.... ....+++-..|.+
T Consensus 72 ~-----~~PT~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~~ 111 (118)
T 3evi_A 72 N-----CLPTIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLAE 111 (118)
T ss_dssp G-----GCSEEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred C-----CCCEEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence 5 56788888 799999999753322 3356777776654
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-07 Score=81.51 Aligned_cols=94 Identities=9% Similarity=0.040 Sum_probs=71.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.|++++|.|| ++||++|+..+|.+.++.++++. ++.++.|..+. +..+++.|+
T Consensus 674 ~~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 726 (780)
T 3apo_A 674 GKTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQA-------------------------YPQTCQKAG 726 (780)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCC-------------------------CHHHHHhcC
Confidence 4688999998 89999999999999999999875 58888887753 235677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+. ..|+++++ ++|+++.++.+........+++.+.|+++..
T Consensus 727 v~-----~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~ 767 (780)
T 3apo_A 727 IK-----AYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKLE 767 (780)
T ss_dssp CC-----SSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHTT
T ss_pred CC-----cCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHHH
Confidence 86 56798888 7898876554211013567888888877654
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-07 Score=69.96 Aligned_cols=44 Identities=11% Similarity=-0.105 Sum_probs=33.7
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
+.+....||++|+.|| ..|||+|....+.|.++.+ .+++++.+.
T Consensus 79 ~~~g~~~~k~~vv~F~-d~~Cp~C~~~~~~l~~l~~----~~v~v~~~~ 122 (216)
T 1eej_A 79 IVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYNA----LGITVRYLA 122 (216)
T ss_dssp EEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred eeecCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHh----CCcEEEEEE
Confidence 4445556788888888 8899999999999887754 367777664
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-07 Score=73.18 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=64.1
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
.+|+++|.|| +.||++|+...|.+.++.+++++. ++.++.|..+... ++.|
T Consensus 266 ~~k~~lv~f~-a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~---------------------------~~~~ 317 (361)
T 3uem_A 266 EKKNVFVEFY-APWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE---------------------------VEAV 317 (361)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB---------------------------CSSC
T ss_pred CCCcEEEEEe-cCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc---------------------------hhhc
Confidence 4788999988 999999999999999999999875 4555555443210 2346
Q ss_pred CCCCCCCcceeeEEEEcCC-CcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 119 GIRHETGVALRATFIFDPQ-NIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~-g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
++. ..|++++++++ |+....+.+ ....+++.+.|++..
T Consensus 318 ~v~-----~~Pt~~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~~~ 356 (361)
T 3uem_A 318 KVH-----SFPTLKFFPASADRTVIDYNG----ERTLDGFKKFLESGG 356 (361)
T ss_dssp CCC-----SSSEEEEECSSSSCCCEECCS----CSSHHHHHHHHTTTS
T ss_pred CCc-----ccCeEEEEECCCCcceeEecC----CCCHHHHHHHHHhcC
Confidence 776 56799999655 565555522 367888998887653
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-07 Score=64.60 Aligned_cols=90 Identities=9% Similarity=-0.030 Sum_probs=54.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+.+||.|| +.||+.|...-+.+.+.++.-.. ..+.++-|..+.. ....++..|+
T Consensus 18 ~~~~LV~F~-A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~-----------------------~~~~la~~~~ 73 (116)
T 3dml_A 18 AELRLLMFE-QPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDP-----------------------LPPGLELARP 73 (116)
T ss_dssp -CEEEEEEE-CTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSC-----------------------CCTTCBCSSC
T ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCC-----------------------CchhHHHHCC
Confidence 356888888 88999998766544333322111 1245555555431 0123445566
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.++++ +|+.+.+..+- ...+++.+.|+.+
T Consensus 74 V~-----g~PT~i~f~-~G~ev~Ri~G~----~~~~~f~~~L~~~ 108 (116)
T 3dml_A 74 VT-----FTPTFVLMA-GDVESGRLEGY----PGEDFFWPMLARL 108 (116)
T ss_dssp CC-----SSSEEEEEE-TTEEEEEEECC----CCHHHHHHHHHHH
T ss_pred CC-----CCCEEEEEE-CCEEEeeecCC----CCHHHHHHHHHHH
Confidence 65 568999998 99999988532 2335666666544
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.9e-07 Score=75.97 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=53.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-------CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-------NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-------~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
+|++||.|| ++||++|+.+.|.+.++.+++.+. .+.++.|..+. +.+
T Consensus 42 ~k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~-------------------------~~~ 95 (470)
T 3qcp_A 42 LCPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS-------------------------EVD 95 (470)
T ss_dssp GSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT-------------------------CHH
T ss_pred CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC-------------------------CHH
Confidence 478999998 899999999999999999998743 27888887753 246
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCC
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQN 138 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g 138 (181)
+++.|++. ..|+++++++.|
T Consensus 96 la~~y~V~-----~~PTlilf~~gg 115 (470)
T 3qcp_A 96 LCRKYDIN-----FVPRLFFFYPRD 115 (470)
T ss_dssp HHHHTTCC-----SSCEEEEEEESS
T ss_pred HHHHcCCC-----ccCeEEEEECCC
Confidence 77788886 567888887555
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.1e-07 Score=75.82 Aligned_cols=88 Identities=10% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.+|+++|.|| ++||++|+...|.+.++.+++... ++.++.|..+. + ...+
T Consensus 375 ~~k~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~---------------~-----------~~~~- 426 (504)
T 2b5e_A 375 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE---------------N-----------DVRG- 426 (504)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG---------------C-----------CCSS-
T ss_pred CCCCEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCc---------------c-----------cccc-
Confidence 4789999998 899999999999999999999843 45555555421 0 0112
Q ss_pred hCCCCCCCcceeeEEEEcCCCcE--EEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 118 LGIRHETGVALRATFIFDPQNII--QHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i--~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
|++. ..|+++++ ++|+. +..+. -....+++++.|++..
T Consensus 427 ~~v~-----~~Pt~~~~-~~G~~~~~~~~~----G~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 427 VVIE-----GYPTIVLY-PGGKKSESVVYQ----GSRSLDSLFDFIKENG 466 (504)
T ss_dssp CCCS-----SSSEEEEE-CCTTSCCCCBCC----SCCCHHHHHHHHHHHC
T ss_pred CCce-----ecCeEEEE-eCCceecceEec----CCCCHHHHHHHHHhcC
Confidence 6665 45788888 78876 33332 1257788888887764
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=58.88 Aligned_cols=92 Identities=13% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCeEEEEEeeC------CCCCCChhHHHHHHHHHHHHHhc----CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcC
Q psy2878 41 GKWKIFYFYPK------DFTFVCPTEISEYNKLVKDFNER----NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDT 110 (181)
Q Consensus 41 gk~~ll~F~~~------~~cp~C~~~~~~l~~l~~~~~~~----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~ 110 (181)
+.++||.||.. .||.+|+...|.+.++.++|... .+.+.-|..|.
T Consensus 37 ~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~------------------------- 91 (178)
T 3ga4_A 37 GYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE------------------------- 91 (178)
T ss_dssp TCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-------------------------
T ss_pred CCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc-------------------------
Confidence 34788888841 59999999999999999999732 34555444443
Q ss_pred CchHHHHhCCCCCCCcceeeEEEEcCCCcEE-----------EEEeccCC--CCCCHHHHHHHHHhh
Q psy2878 111 NGSLIDQLGIRHETGVALRATFIFDPQNIIQ-----------HITVNNLN--VGRNPIETLRILDAI 164 (181)
Q Consensus 111 ~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~-----------~~~~~~~~--~~~~~~~ll~~l~~l 164 (181)
+.+++..||+. +.|+.+++-+.+... +.+ ... ....++.+.+.|.+.
T Consensus 92 ~~~la~~~~I~-----siPtl~~F~~g~~~~~~~~~~~~~~~~~y--~~~~~~~~~ae~la~fi~~~ 151 (178)
T 3ga4_A 92 VPQLVKDLKLQ-----NVPHLVVYPPAESNKQSQFEWKTSPFYQY--SLVPENAENTLQFGDFLAKI 151 (178)
T ss_dssp CHHHHHHTTCC-----SSCEEEEECCCCGGGGGGCCTTTSCCEEE--CCCGGGTTCHHHHHHHHHHH
T ss_pred CHHHHHHcCCC-----CCCEEEEEcCCCCCCccccccccCCccee--ecccCCCcCHHHHHHHHHHh
Confidence 35667778876 566777775444332 222 122 257888999988654
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-06 Score=62.04 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=35.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
.|+++|+.|| ..|||.|....+.+.++.+++.+ ++.+.-+..+
T Consensus 24 ~~~~~vv~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFF-AYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred CCCeEEEEEE-CCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence 4688888887 88999999999999999888765 5777777764
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.4e-05 Score=63.25 Aligned_cols=90 Identities=6% Similarity=-0.011 Sum_probs=62.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHH------HHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEI------SEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~------~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
.+++++|.|| +.||++|...- |.+.++.++++..++.+..|..+. +.+
T Consensus 29 ~~~~vlV~Fy-ApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~-------------------------~~~ 82 (367)
T 3us3_A 29 KYEVLALLYH-EPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK-------------------------DAA 82 (367)
T ss_dssp HCSEEEEEEE-CCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT-------------------------THH
T ss_pred hCCeEEEEEE-CCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc-------------------------cHH
Confidence 3578888888 89998873322 466777777765567777777664 236
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
+++.|++. ..|+.+++. +|+.+ .+. -.+..+.+++.+++...
T Consensus 83 l~~~~~V~-----~~PTl~~f~-~G~~~-~y~----G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 83 VAKKLGLT-----EEDSIYVFK-EDEVI-EYD----GEFSADTLVEFLLDVLE 124 (367)
T ss_dssp HHHHHTCC-----STTEEEEEE-TTEEE-ECC----SCCSHHHHHHHHHHHHS
T ss_pred HHHHcCCC-----cCceEEEEE-CCcEE-EeC----CCCCHHHHHHHHHHhcC
Confidence 77889987 567888885 78764 331 13578888888876543
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.05 E-value=6.3e-06 Score=60.33 Aligned_cols=42 Identities=10% Similarity=0.057 Sum_probs=33.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
.++++|+.|| ..|||+|....+.|.++.+++.+ ++.+.-+..
T Consensus 24 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (192)
T 3h93_A 24 PGKIEVVELF-WYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA 65 (192)
T ss_dssp TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred CCCCEEEEEE-CCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence 4677888887 88999999999999988888765 566665544
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-05 Score=59.58 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=64.6
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec---CC--HHHH---------HHHHHHcCCC
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS---DN--EFVK---------LAWRRENSNL 99 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~---d~--~~~~---------~~~~~~~~~~ 99 (181)
+.+..-.++.+|+.|+ ..|||+|....+.+.++.+. .++.++-+.. ++ .... .++...+...
T Consensus 90 i~~G~~~ak~~v~~F~-D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~ 165 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEAS 165 (241)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHT
T ss_pred ceECCCCCCeEEEEEE-CCCChhHHHHHHHHHHHHhC---CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444445677777777 88999999999988876553 2466654433 11 1111 0111111000
Q ss_pred c---ccc--------eeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 100 Y---KLN--------HWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 100 ~---~~~--------~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+ ++. .....+.+.++++.+|+. .+|++++.|.+|++ ....+ . ...+++.+.|++..
T Consensus 166 ~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~-----gtPt~vi~~~~G~~-~~~~G-~---~~~~~L~~~l~~~~ 232 (241)
T 1v58_A 166 GGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN-----VTPAIYYMSKENTL-QQAVG-L---PDQKTLNIIMGNKL 232 (241)
T ss_dssp TTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC-----SSCEEEEEETTTEE-EEEES-S---CCHHHHHHHTTC--
T ss_pred hccCCCCccccCCHHHHHHHHHHHHHHHHcCCC-----CCCEEEEECCCCCE-EEecC-C---CCHHHHHHHHHHHH
Confidence 1 010 000122346678889987 56799999888976 23322 1 34567777776554
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3e-05 Score=53.44 Aligned_cols=97 Identities=10% Similarity=-0.030 Sum_probs=64.3
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++++++.|| +. |..|....+.|.++.++|+.+ +.++-|..|. ..+++..||+
T Consensus 23 ~~pv~v~f~-a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~-------------------------~~~~a~~~gi 74 (133)
T 2djk_A 23 GIPLAYIFA-ET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKA-------------------------FGAHAGNLNL 74 (133)
T ss_dssp TSCEEEEEC-SC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTT-------------------------TGGGTTTTTC
T ss_pred CCCEEEEEe-cC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHH-------------------------hHHHHHHcCC
Confidence 467888888 66 678998899999998888653 7777666553 2345567888
Q ss_pred CCCCCcceeeEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHHHhhccCCccc
Q psy2878 121 RHETGVALRATFIFDP-QNIIQHITVNNLNVGRNPIETLRILDAIQTGKLCA 171 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~-~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~~~~ 171 (181)
. +-..|+.++++. +|+. +... ..-....+.+.+.|+++..|+..|
T Consensus 75 ~---~~~iPtl~i~~~~~g~~-~~~~--~~g~~~~~~l~~fi~~~l~Gkl~p 120 (133)
T 2djk_A 75 K---TDKFPAFAIQEVAKNQK-FPFD--QEKEITFEAIKAFVDDFVAGKIEP 120 (133)
T ss_dssp C---SSSSSEEEEECTTTCCB-CCCC--SSSCCCHHHHHHHHHHHHHTCCCC
T ss_pred C---cccCCEEEEEecCcCcc-cCCC--CccccCHHHHHHHHHHHHcCCcCc
Confidence 6 211678888874 5776 4431 112234567888887777665444
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=97.92 E-value=2.9e-05 Score=56.79 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=33.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
.++.+|+.|| ..+||.|....+.|.++.+++.. ++.+..+..
T Consensus 21 ~~~~~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 62 (195)
T 2znm_A 21 SGKIEVLEFF-GYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV 62 (195)
T ss_dssp SSSEEEEEEE-CTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred CCCcEEEEEE-CCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence 4677777777 78999999999999999888764 577776664
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-05 Score=57.07 Aligned_cols=70 Identities=14% Similarity=-0.007 Sum_probs=47.5
Q ss_pred CCCCeEEEEEeeCC-CCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 39 FPGKWKIFYFYPKD-FTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 39 ~~gk~~ll~F~~~~-~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
..++.++++|| +. ||++|....+.+.++.+. ..++.++.|..+.++. .++++.
T Consensus 20 ~~~~v~lv~f~-~~~~C~~C~~~~~~~~~la~~--~~~v~~~~vd~~~~~~-----------------------~~~~~~ 73 (226)
T 1a8l_A 20 MVNPVKLIVFV-RKDHCQYCDQLKQLVQELSEL--TDKLSYEIVDFDTPEG-----------------------KELAKR 73 (226)
T ss_dssp CCSCEEEEEEE-CSSSCTTHHHHHHHHHHHHTT--CTTEEEEEEETTSHHH-----------------------HHHHHH
T ss_pred cCCCeEEEEEe-cCCCCchhHHHHHHHHHHHhh--CCceEEEEEeCCCccc-----------------------HHHHHH
Confidence 34455556665 88 999999999988887654 2357888777765321 356677
Q ss_pred hCCCCCCCcceeeEEEEcCCCcE
Q psy2878 118 LGIRHETGVALRATFIFDPQNII 140 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i 140 (181)
||+. ..|+.+++ ++|+.
T Consensus 74 ~~v~-----~~Pt~~~~-~~g~~ 90 (226)
T 1a8l_A 74 YRID-----RAPATTIT-QDGKD 90 (226)
T ss_dssp TTCC-----SSSEEEEE-ETTBC
T ss_pred cCCC-----cCceEEEE-cCCce
Confidence 8876 56787777 46643
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6.7e-06 Score=55.06 Aligned_cols=70 Identities=9% Similarity=-0.017 Sum_probs=43.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
+++.+++ || ++|||+|....+.|.++.. .+.++-|..+... .+. ...+++.||
T Consensus 18 ~~~~vv~-f~-a~~C~~C~~~~~~l~~~~~-----~~~~v~v~~~~~~--~~~------------------~~~l~~~~~ 70 (116)
T 2e7p_A 18 SSAPVVV-FS-KTYCGYCNRVKQLLTQVGA-----SYKVVELDELSDG--SQL------------------QSALAHWTG 70 (116)
T ss_dssp TSSSEEE-EE-CTTCHHHHHHHHHHHHHTC-----CCEEEEGGGSTTH--HHH------------------HHHHHHHHS
T ss_pred cCCCEEE-EE-CCCChhHHHHHHHHHHcCC-----CeEEEEccCCCCh--HHH------------------HHHHHHHhC
Confidence 3555555 66 8999999998888777632 2344444444321 010 135677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+. ..|++| + +|+++..+
T Consensus 71 v~-----~~Pt~~-~--~g~~v~~~ 87 (116)
T 2e7p_A 71 RG-----TVPNVF-I--GGKQIGGC 87 (116)
T ss_dssp CC-----SSCEEE-E--TTEEEECH
T ss_pred CC-----CcCEEE-E--CCEEECCh
Confidence 76 566774 4 68887665
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00033 Score=50.19 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=37.4
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEec
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSS 83 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~ 83 (181)
.+.+....++.+|+.|+ ..+||.|....+.+.++.+++.+. +++++....
T Consensus 19 ~~~~G~~~a~v~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~ 69 (175)
T 1z6m_A 19 GLHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF 69 (175)
T ss_dssp SEEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred CcccCCCCCCeEEEEEE-CCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence 45666667787777776 779999999999999998888443 477766543
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.70 E-value=8.2e-05 Score=54.18 Aligned_cols=42 Identities=10% Similarity=-0.004 Sum_probs=32.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
.++.+|+.|| ..+||.|....+.+.++.+++.. ++.+..+..
T Consensus 24 ~a~v~i~~f~-d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIF-GYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred CCCeEEEEEE-CCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence 4676777776 78999999999999988887754 566665553
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=7.5e-05 Score=55.71 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=58.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec-----CCHHH------------HHHHHHHcCCCccc
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS-----DNEFV------------KLAWRRENSNLYKL 102 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~-----d~~~~------------~~~~~~~~~~~~~~ 102 (181)
.++++|+.|+ ..|||+|....+.|.++.+ .++.+..+.. ++... .++|...+. ...+
T Consensus 85 ~~k~~vv~F~-d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~-~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEK-GNLP 158 (211)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHT-TCCC
T ss_pred CCCEEEEEEE-CCCCHhHHHHHHHHHHHHh----CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHc-CCCC
Confidence 4578888887 8899999999988887533 3666654432 11110 111211110 0011
Q ss_pred ce---eEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 103 NH---WQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 103 ~~---~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ....+.+.++++.+|+. .+|++++ .||+. . .+ ....+++.+.|++.+
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~-----gTPt~vi--~nG~~---~-~G---~~~~~~l~~~l~~~~ 210 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVR-----GTPSIVT--STGEL---I-GG---YLKPADLLRALEETA 210 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCC-----SSCEEEC--TTSCC---C-CS---CCCHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHcCCC-----cCCEEEE--eCCEE---e-cC---CCCHHHHHHHHHhcc
Confidence 10 11122346788899987 5677766 46762 1 11 135677777776543
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00023 Score=60.09 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=57.1
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
++..+..|| +.|||+|+...|.|+++..++. ++.+..|..+. ..+++..|++
T Consensus 117 ~~~~i~~f~-a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~-------------------------~~~~~~~~~i 168 (521)
T 1hyu_A 117 GDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT-------------------------FQNEITERNV 168 (521)
T ss_dssp SCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT-------------------------CHHHHHHTTC
T ss_pred CCcceEEEE-CCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechh-------------------------hHHHHHHhCC
Confidence 455556665 9999999999999998877764 67777776653 2356667887
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. +.|+.++ +|+.+... ....+++++.+++.
T Consensus 169 ~-----svPt~~i---~g~~~~~G------~~~~~~l~~~l~~~ 198 (521)
T 1hyu_A 169 M-----GVPAVFV---NGKEFGQG------RMTLTEIVAKVDTG 198 (521)
T ss_dssp C-----SSSEEEE---TTEEEEES------CCCHHHHHHHHCCS
T ss_pred C-----ccCEEEE---CCEEEecC------CCCHHHHHHHHhhc
Confidence 6 6677766 88887542 13456777776554
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00015 Score=54.15 Aligned_cols=72 Identities=8% Similarity=-0.074 Sum_probs=48.4
Q ss_pred CeEEEEEe----eCCCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 42 KWKIFYFY----PKDFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 42 k~~ll~F~----~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
++++|.|| ++.||+.|...++.+.++++++.+ ..+.+..|..+ .+.++++
T Consensus 21 ~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~-------------------------~~~~l~~ 75 (229)
T 2ywm_A 21 EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPF-------------------------THKEETE 75 (229)
T ss_dssp SCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTT-------------------------TCHHHHH
T ss_pred CCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCc-------------------------ccHHHHH
Confidence 45666666 356677778888888888877753 34666666332 2457888
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 117 QLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
.||+. ..|+..+++ +|.....+
T Consensus 76 ~~~v~-----~~Ptl~~~~-~~~~~~~~ 97 (229)
T 2ywm_A 76 KYGVD-----RVPTIVIEG-DKDYGIRY 97 (229)
T ss_dssp HTTCC-----BSSEEEEES-SSCCCEEE
T ss_pred HcCCC-----cCcEEEEEC-CCccccee
Confidence 89987 567888885 55555555
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00017 Score=44.96 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=41.9
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET 124 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~ 124 (181)
+..|+ +.|||+|....+.|.++.++ .++.+..+..|... .+.++++.||+.
T Consensus 4 ~~~f~-~~~C~~C~~~~~~l~~~~~~---~~~~~~~~~v~~~~----------------------~~~~~~~~~gv~--- 54 (80)
T 2k8s_A 4 KAIFY-HAGCPVCVSAEQAVANAIDP---SKYTVEIVHLGTDK----------------------ARIAEAEKAGVK--- 54 (80)
T ss_dssp EEEEE-ECSCHHHHHHHHHHHHHSCT---TTEEEEEEETTTCS----------------------STHHHHHHHTCC---
T ss_pred eEEEe-CCCCCchHHHHHHHHHHHHh---cCCeEEEEEecCCh----------------------hhHHHHHHcCCC---
Confidence 44455 88999999998888776543 34555555554310 123556678876
Q ss_pred CcceeeEEEEcCCCcEEEEE
Q psy2878 125 GVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 125 g~~~p~~~liD~~g~i~~~~ 144 (181)
..|++++ +|+++...
T Consensus 55 --~vPt~~i---~g~~~~~G 69 (80)
T 2k8s_A 55 --SVPALVI---DGAAFHIN 69 (80)
T ss_dssp --EEEEEEE---TTEEEEEE
T ss_pred --cCCEEEE---CCEEEEec
Confidence 6777766 78876543
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=45.56 Aligned_cols=37 Identities=11% Similarity=-0.070 Sum_probs=28.1
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
|+.|+ ++|||.|....+.|.++..++ .++.+.-|..+
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~vdi~ 39 (85)
T 1ego_A 3 TVIFG-RSGCPYCVRAKDLAEKLSNER--DDFQYQYVDIR 39 (85)
T ss_dssp EEEEC-CTTSTHHHHHHHHHHHHHHHH--SSCEEEEECHH
T ss_pred EEEEe-CCCCCCHHHHHHHHHHHHhcC--CCceEEEEecc
Confidence 44555 889999999999888887765 36888777654
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.001 Score=53.12 Aligned_cols=95 Identities=12% Similarity=0.141 Sum_probs=63.2
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.++|+|+ +.||+.|....+.+.++.++|+.+ +.++.|..+..+ ...+++.||+.
T Consensus 136 ~~~~v~F~-~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~~-----------------------~~~~~~~fgi~ 190 (361)
T 3uem_A 136 KTHILLFL-PKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHTD-----------------------NQRILEFFGLK 190 (361)
T ss_dssp CEEEEEEC-CSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSGG-----------------------GHHHHHHTTCC
T ss_pred CcEEEEEE-eCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChHH-----------------------HHHHHHHcCCC
Confidence 45566666 889999999999999999999864 777777655311 24566778875
Q ss_pred CCCCcceeeEEEEcCCCcE-EEEEeccCCCCCCHHHHHHHHHhhccC
Q psy2878 122 HETGVALRATFIFDPQNII-QHITVNNLNVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i-~~~~~~~~~~~~~~~~ll~~l~~l~~~ 167 (181)
+-..|+..+++..+.. .|.. .....+.+++.+.++....+
T Consensus 191 ---~~~~P~~~~~~~~~~~~ky~~---~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 191 ---KEECPAVRLITLEEEMTKYKP---ESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp ---TTTCSEEEEEECC--CCEECC---SSCCCCHHHHHHHHHHHHTT
T ss_pred ---ccCCccEEEEEcCCcccccCC---CccccCHHHHHHHHHHHhcC
Confidence 2126788888764432 3322 12246778888888877654
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00049 Score=44.05 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=43.8
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET 124 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~ 124 (181)
|+.|+ +.||++|....+.|.++..++ +.-|..|. +.+++.+||+
T Consensus 3 vv~f~-a~~C~~C~~~~~~L~~~~~~~------~~~vdid~-------------------------~~~l~~~~g~---- 46 (87)
T 1ttz_A 3 LTLYQ-RDDCHLCDQAVEALAQARAGA------FFSVFIDD-------------------------DAALESAYGL---- 46 (87)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHTTCCC------EEEEECTT-------------------------CHHHHHHHTT----
T ss_pred EEEEE-CCCCchHHHHHHHHHHHHHhh------eEEEECCC-------------------------CHHHHHHhCC----
Confidence 45555 999999987777665543221 23333332 3345566775
Q ss_pred CcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 125 GVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 125 g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
..|++++ .+|+.+. + ..+.+++.+.|++..
T Consensus 47 --~vPtl~~--~~G~~v~---g----~~~~~~L~~~l~~~~ 76 (87)
T 1ttz_A 47 --RVPVLRD--PMGRELD---W----PFDAPRLRAWLDAAP 76 (87)
T ss_dssp --TCSEEEC--TTCCEEE---S----CCCHHHHHHHHHTCC
T ss_pred --CcCeEEE--ECCEEEe---C----CCCHHHHHHHHHHHH
Confidence 2566665 6799874 1 135567777776543
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0062 Score=44.20 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=64.9
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
.-.+|+++|+++ +.+|+.|......+ .++.+.+. .++.+++.+.+..+....+.... .-.+ ...+
T Consensus 52 k~e~K~LlVyLh-s~~~~~~~~f~~~~L~~~~V~~~l~-~nfV~w~~dv~~~e~~~~~~~~~----~~~~------g~~~ 119 (178)
T 2ec4_A 52 ARDRKLLAIYLH-HDESVLTNVFCSQMLCAESIVSYLS-QNFITWAWDLTKDSNRARFLTMC----NRHF------GSVV 119 (178)
T ss_dssp TTTCCEEEEEEE-CSSCSHHHHHHHHTTTCHHHHHHHH-HTEEEEEEECCSHHHHHHHHHHH----HHHT------CHHH
T ss_pred hhhCcEEEEEEe-CCCCccHHHHHHHhcCCHHHHHHHH-cCEEEEEEeCCCchhhhhhhhhh----hhhh------HHHH
Confidence 446788888888 88999887665443 23333343 48999999999877655544322 0000 1233
Q ss_pred H---HHhCCCCCCCcceeeEEEEcCCC---cEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 115 I---DQLGIRHETGVALRATFIFDPQN---IIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 115 ~---~~~gv~~~~g~~~p~~~liD~~g---~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+ +.|++. ..|+..+|++++ .++.+..+. ...++++..|.+
T Consensus 120 a~~~~~~~~~-----~~P~l~ii~~~~~~~~vl~~~~G~----~~~~~ll~~L~~ 165 (178)
T 2ec4_A 120 AQTIRTQKTD-----QFPLFLIIMGKRSSNEVLNVIQGN----TTVDELMMRLMA 165 (178)
T ss_dssp HHHHHHSCST-----TCSEEEEECCCSSCCCEEEEECSC----CCHHHHHHHHHH
T ss_pred HHHHhhcCCC-----CCCeEEEEEcCCCceEEEEEEeCC----CCHHHHHHHHHH
Confidence 3 347765 567999998774 677777433 345666665543
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0007 Score=44.28 Aligned_cols=80 Identities=10% Similarity=-0.014 Sum_probs=48.0
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
++.|+.|+ +.||++|....+.|.++. .++.+.-|..+.++ +.++++.|| .
T Consensus 16 ~~~v~~f~-~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~~~~-----------------------~~el~~~~g-~ 65 (100)
T 1wjk_A 16 LPVLTLFT-KAPCPLCDEAKEVLQPYK-----DRFILQEVDITLPE-----------------------NSTWYERYK-F 65 (100)
T ss_dssp CCEEEEEE-CSSCHHHHHHHHHTSTTS-----SSSEEEEEETTSST-----------------------THHHHHHSS-S
T ss_pred CCEEEEEe-CCCCcchHHHHHHHHHhh-----hCCeEEEEECCCcc-----------------------hHHHHHHHC-C
Confidence 45666666 889999987776665442 34777777776321 124455666 5
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
..|++ ++ +|+.+. . .. .+.+++.+.|+++.
T Consensus 66 -----~vP~l-~~--~g~~~~-~-~g----~~~~~l~~~l~~~~ 95 (100)
T 1wjk_A 66 -----DIPVF-HL--NGQFLM-M-HR----VNTSKLEKQLRKLS 95 (100)
T ss_dssp -----SCSEE-EE--SSSEEE-E-SS----CCHHHHHHHHHSSS
T ss_pred -----CCCEE-EE--CCEEEE-e-cC----CCHHHHHHHHHHHH
Confidence 45654 44 577652 2 12 45567777776554
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.016 Score=43.79 Aligned_cols=30 Identities=3% Similarity=-0.083 Sum_probs=23.4
Q ss_pred CCeEEEEEeeCCC--CCCChhHHHHHHHHHHHH
Q psy2878 41 GKWKIFYFYPKDF--TFVCPTEISEYNKLVKDF 71 (181)
Q Consensus 41 gk~~ll~F~~~~~--cp~C~~~~~~l~~l~~~~ 71 (181)
+++++|.|| +.| |+.|....+.+.++.+..
T Consensus 25 ~~pv~v~~~-~~~~~c~~c~~~~~~l~ela~~~ 56 (243)
T 2hls_A 25 VNPVEVHVF-LSKSGCETCEDTLRLMKLFEEES 56 (243)
T ss_dssp CSCEEEEEE-ECSSSCTTHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEE-eCCCCCCchHHHHHHHHHHHHhc
Confidence 467888888 567 999988887777777654
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0021 Score=42.74 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=29.0
Q ss_pred eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 43 WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 43 ~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
..|+.|+ +.||+.|....+.|.++.+++ ++.+.-|..+.
T Consensus 30 ~~vv~y~-~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~ 68 (107)
T 2fgx_A 30 RKLVVYG-REGCHLCEEMIASLRVLQKKS---WFELEVINIDG 68 (107)
T ss_dssp CCEEEEE-CSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTT
T ss_pred cEEEEEe-CCCChhHHHHHHHHHHHHHhc---CCeEEEEECCC
Confidence 3466666 889999998888888876654 57777777664
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0032 Score=44.22 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHH
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKL 67 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l 67 (181)
+.+..-.++.+|+.|. -.+||+|....+.+.++
T Consensus 7 i~~~~~~a~~~vv~f~-D~~Cp~C~~~~~~l~~l 39 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFS-DPDCPFCKRLEHEFEKM 39 (147)
T ss_dssp EEEEETTCCEEEEEEE-CTTCHHHHHHHHHHTTC
T ss_pred eeeecCCCCEEEEEEE-CCCChhHHHHHHHHhhc
Confidence 3333334677777776 77899999888877654
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.014 Score=41.52 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=29.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
.++++|+-|+ .-.||.|....+.+.++.+++.+ ++.++-+
T Consensus 20 ~~~~~vvEf~-dy~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~ 59 (184)
T 4dvc_A 20 SSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPE-GAKFQKN 59 (184)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCT-TCEEEEE
T ss_pred CCCCEEEEEE-CCCCHhHHHHhHHHHHHHhhcCC-ceEEEEE
Confidence 4678888887 56799999888888888877765 3444443
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0092 Score=36.68 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=22.8
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
++.|+ +.|||.|....+.|.+ .++.+..|..+.
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 35 (81)
T 1h75_A 3 ITIYT-RNDCVQCHATKRAMEN-------RGFDFEMINVDR 35 (81)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCCeEEEECCC
Confidence 34454 8899999876665553 467777777764
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0031 Score=46.08 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=33.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
.++++|+.|| ..|||+|....+.+.++.+++.+ ++.+.-+..+
T Consensus 23 ~~~v~vv~f~-d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFF-GYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEE-CTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence 4677888887 88999999999999988887766 5766666553
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.019 Score=39.08 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=20.9
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
++| |+ +.|||+|+...+.|.++ ++.+..|..|.
T Consensus 29 vvv-f~-~~~Cp~C~~~~~~L~~~-------~i~~~~vdid~ 61 (130)
T 2cq9_A 29 VVI-FS-KTSCSYCTMAKKLFHDM-------NVNYKVVELDL 61 (130)
T ss_dssp EEE-EE-CSSCSHHHHHHHHHHHH-------TCCCEEEETTT
T ss_pred EEE-EE-cCCChHHHHHHHHHHHc-------CCCcEEEECcC
Confidence 444 54 88999998777666543 45555555543
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0035 Score=49.07 Aligned_cols=88 Identities=6% Similarity=-0.038 Sum_probs=51.3
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCc
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNG 112 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 112 (181)
.+.+++.-++..++.|| +.|||+|+...|.+.++.+++ .. |..|.. + . .|.+.
T Consensus 189 ~~~la~~l~~~~vV~F~-A~WC~~Ck~l~p~le~lA~~l-----~~--Vd~d~~--------------d--~---~~~~~ 241 (291)
T 3kp9_A 189 AVGLAAHLRQIGGTMYG-AYWCPHCQDQKELFGAAFDQV-----PY--VECSPN--------------G--P---GTPQA 241 (291)
T ss_dssp HHHHHHHHHHTTCEEEE-CTTCHHHHHHHHHHGGGGGGS-----CE--EESCSS--------------C--S---SSCCC
T ss_pred HHHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHHHHHHHc-----CE--EEEeec--------------C--c---hhhHH
Confidence 34454443344467777 999999999888888765332 11 122210 0 0 02357
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
+++++|++. ..|+.++ +|+. +.+ ..+.+++.+.+.
T Consensus 242 ~la~~~gI~-----~vPT~~i---~G~~---~~G----~~~~~~L~~~l~ 276 (291)
T 3kp9_A 242 QECTEAGIT-----SYPTWII---NGRT---YTG----VRSLEALAVASG 276 (291)
T ss_dssp HHHHTTTCC-----STTEEEE---TTEE---EES----CCCHHHHHHHTC
T ss_pred HHHHHcCCc-----ccCeEEE---CCEE---ecC----CCCHHHHHHHHC
Confidence 888999987 4567544 6763 311 245677776654
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.032 Score=35.83 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=24.3
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
|..+|||.|...-. .+.+.|+.+.-+..+...+..+...
T Consensus 9 Ys~~~Cp~C~~aK~-------~L~~~gi~y~~idi~~d~~~~~~~~ 47 (92)
T 2lqo_A 9 YTTSWCGYCLRLKT-------ALTANRIAYDEVDIEHNRAAAEFVG 47 (92)
T ss_dssp EECTTCSSHHHHHH-------HHHHTTCCCEEEETTTCHHHHHHHH
T ss_pred EcCCCCHhHHHHHH-------HHHhcCCceEEEEcCCCHHHHHHHH
Confidence 34889999975443 3445678777777765444444333
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.014 Score=44.28 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=56.9
Q ss_pred CCeEEEEEeeC--CCCCCChhHHHHHHHHHHHHHh-cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 41 GKWKIFYFYPK--DFTFVCPTEISEYNKLVKDFNE-RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 41 gk~~ll~F~~~--~~cp~C~~~~~~l~~l~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
+++++|.|| + .||+ ..|.+.++.+++.. .++.|.-|..|... ++.+.++++.
T Consensus 22 ~~~vlV~Fy-A~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g--------------------~~~~~~l~~~ 76 (240)
T 2qc7_A 22 SKFVLVKFD-TQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYG--------------------DKLNMELSEK 76 (240)
T ss_dssp CSEEEEEEC-CSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSS--------------------SCCSHHHHHH
T ss_pred CCCEEEEEe-CCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCccc--------------------chhhHHHHHH
Confidence 578888888 6 8887 77888898888875 35777777755300 0012456677
Q ss_pred hCCCCCCCcceeeEEEEcCCCc--EEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 118 LGIRHETGVALRATFIFDPQNI--IQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~--i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
|++. +-..|+.+++ ++|+ ....+.+ ....+.+.+.|++.
T Consensus 77 ~~V~---~~~~PTl~~f-~~G~~~~~~~y~G----~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 77 YKLD---KESYPVFYLF-RDGDFENPVPYTG----AVKVGAIQRWLKGQ 117 (240)
T ss_dssp TTCC---GGGCSEEEEE-ETTCSSCCEECCS----CSCHHHHHHHHHHT
T ss_pred cCCC---CCCCCEEEEE-eCCCcCcceeecC----CCCHHHHHHHHHHh
Confidence 7763 1135677777 4666 2333311 24567777777755
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.029 Score=42.76 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=57.4
Q ss_pred CCCeEEEEEee-CCCCCCChhHHHHHHHHHHHHHh--cCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHH
Q psy2878 40 PGKWKIFYFYP-KDFTFVCPTEISEYNKLVKDFNE--RNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLID 116 (181)
Q Consensus 40 ~gk~~ll~F~~-~~~cp~C~~~~~~l~~l~~~~~~--~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 116 (181)
.++++||.||. +.||+ ..|.+.++.+++.. .++.|.-|..+.... ..+.++++
T Consensus 32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~--------------------~~n~~la~ 87 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGE--------------------LENKALGD 87 (248)
T ss_dssp TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTT--------------------CTTHHHHH
T ss_pred cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccc--------------------cccHHHHH
Confidence 35688888874 78997 78889999888875 357777777654100 00245666
Q ss_pred HhCCCCCCCcceeeEEEEcCCCcE--EEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 117 QLGIRHETGVALRATFIFDPQNII--QHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 117 ~~gv~~~~g~~~p~~~liD~~g~i--~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
.|+|. +-..|+.+++- |++ ...+ ...-....+++.+.|++.
T Consensus 88 ~~~V~---~~~~PTl~~F~--G~~~~~~~y--~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 88 RYKVD---DKNFPSIFLFK--GNADEYVQL--PSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp HTTCC---TTSCCEEEEES--SSSSSEEEC--CTTSCCCHHHHHHHHHHH
T ss_pred HhCCC---cCCCCeEEEEe--CCcCcceee--cccCCCCHHHHHHHHHHh
Confidence 77763 11356877774 763 2222 001235677888888765
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=95.60 E-value=0.016 Score=38.41 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=20.3
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcE---EEEEecC
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI---LLGGSSD 84 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~---vi~Is~d 84 (181)
.|+.|+ +.|||.|....+.|. +.++. +.-|..+
T Consensus 20 ~vv~f~-~~~Cp~C~~~~~~L~-------~~~~~~~~~~~vdi~ 55 (114)
T 2hze_A 20 KVTIFV-KYTCPFCRNALDILN-------KFSFKRGAYEIVDIK 55 (114)
T ss_dssp CEEEEE-CTTCHHHHHHHHHHT-------TSCBCTTSEEEEEGG
T ss_pred CEEEEE-eCCChhHHHHHHHHH-------HcCCCcCceEEEEcc
Confidence 445555 889999986655443 34555 5555554
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.018 Score=34.61 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=21.0
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
|.+.|||.|....+.|.+ .++.+..+..+.
T Consensus 6 y~~~~C~~C~~~~~~l~~-------~~i~~~~~di~~ 35 (75)
T 1r7h_A 6 YTKPACVQCTATKKALDR-------AGLAYNTVDISL 35 (75)
T ss_dssp EECTTCHHHHHHHHHHHH-------TTCCCEEEETTT
T ss_pred EeCCCChHHHHHHHHHHH-------cCCCcEEEECCC
Confidence 348899999877666554 367776777664
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.042 Score=41.19 Aligned_cols=58 Identities=5% Similarity=0.187 Sum_probs=42.9
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
+.++....++.+..+.....+.++.+.+.+..+++.||+. ..|+.+|++++|++....
T Consensus 165 ~~~~~~~~~~~~~d~~~~~~i~v~~~~~~~~~l~~~f~v~-----~~Pslvl~~~~g~~~~~~ 222 (244)
T 3q6o_A 165 EXGGSYLAREVALDLSQHKGVAVRRVLNTEANVVRKFGVT-----DFPSCYLLFRNGSVSRVP 222 (244)
T ss_dssp ECTTCCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCC-----CSSEEEEEETTSCEEECC
T ss_pred EECCcchHHHHHHHhccCCceEEEEEeCchHHHHHHcCCC-----CCCeEEEEeCCCCeEeec
Confidence 3333334455555554445677888888889999999997 568999999999998776
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.027 Score=39.31 Aligned_cols=20 Identities=15% Similarity=0.271 Sum_probs=14.5
Q ss_pred EEeeCCCCCCChhHHHHHHHH
Q psy2878 47 YFYPKDFTFVCPTEISEYNKL 67 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l 67 (181)
+|+ +.|||+|....+.|.++
T Consensus 53 vf~-~~~Cp~C~~~k~~L~~~ 72 (146)
T 2ht9_A 53 IFS-KTSCSYCTMAKKLFHDM 72 (146)
T ss_dssp EEE-CTTCHHHHHHHHHHHHH
T ss_pred EEE-CCCChhHHHHHHHHHHc
Confidence 354 89999998777666543
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.03 Score=37.42 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=19.9
Q ss_pred EEEEeeCCCCCCChhH-HHHHHHHHHHHHhcC---cEEEEEecCC
Q psy2878 45 IFYFYPKDFTFVCPTE-ISEYNKLVKDFNERN---AILLGGSSDN 85 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~-~~~l~~l~~~~~~~~---~~vi~Is~d~ 85 (181)
|+.|+ +.|||.|... .+. +.+.+ +.+.-|..+.
T Consensus 27 Vvvf~-~~~Cp~C~~alk~~-------L~~~~~~~i~~~~vdid~ 63 (118)
T 3c1r_A 27 IFVAS-KTYCPYCHAALNTL-------FEKLKVPRSKVLVLQLND 63 (118)
T ss_dssp EEEEE-CSSCHHHHHHHHHH-------HTTSCCCGGGEEEEEGGG
T ss_pred EEEEE-cCCCcCHHHHHHHH-------HHHcCCCCCCeEEEECcc
Confidence 33444 8899999865 332 33444 6666666553
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0028 Score=46.64 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=33.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d 84 (181)
.++++|+-|| +.|||+|....|.+ .++.+++.+ ++.+.-+..+
T Consensus 112 ~~~~~vveFf-~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~ 157 (197)
T 1un2_A 112 AGAPQVLEFF-SFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN 157 (197)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred CCCCEEEEEE-CCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccC
Confidence 4678899998 78999999998888 777777754 5777666654
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.46 Score=35.06 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=58.9
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+.+.++.+|...||+.|....+.+.++.++++.+ +.++.|..+.... ..+.+.||+
T Consensus 130 ~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~~~~-----------------------~~~l~~fgl 185 (227)
T 4f9z_D 130 VIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGMKEN-----------------------GKVISFFKL 185 (227)
T ss_dssp SCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTSGGG-----------------------HHHHHHTTC
T ss_pred CCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCccHhH-----------------------HHHHHHcCC
Confidence 3345544444667888887788888888888754 6666666543211 123345665
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccC
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~ 167 (181)
. +...|+..+++..+...|... . ..-..+.|.+.++.+..|
T Consensus 186 ~---~~~~P~~~i~~~~~~~ky~~~--~-~~~t~~~i~~Fv~~~~~G 226 (227)
T 4f9z_D 186 K---ESQLPALAIYQTLDDEWDTLP--T-AEVSVEHVQNFCDGFLSG 226 (227)
T ss_dssp C---GGGCSEEEEEESSSCCEEEET--T-CCCCHHHHHHHHHHHHTT
T ss_pred C---cccCCEEEEEECCCCccccCC--c-CCCCHHHHHHHHHHHhCC
Confidence 3 113568888886665455552 1 124678888888877655
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.15 Score=31.85 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=12.3
Q ss_pred eCCCCCCChhHHHHHHH
Q psy2878 50 PKDFTFVCPTEISEYNK 66 (181)
Q Consensus 50 ~~~~cp~C~~~~~~l~~ 66 (181)
.+.|||.|......|.+
T Consensus 18 ~~~~Cp~C~~~~~~L~~ 34 (92)
T 3ic4_A 18 GLSTCPHCKRTLEFLKR 34 (92)
T ss_dssp ECTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 38899999876655544
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.16 Score=31.64 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=21.2
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
++.|+ +.|||.|....+.|.+ .++.+.-+..+
T Consensus 8 v~~y~-~~~C~~C~~~~~~L~~-------~~i~~~~vdv~ 39 (89)
T 2klx_A 8 IILYT-RPNCPYCKRARDLLDK-------KGVKYTDIDAS 39 (89)
T ss_dssp EEEES-CSCCTTTHHHHHHHHH-------HTCCEEEECSC
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 34444 8899999876655543 35666666666
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.1 Score=33.66 Aligned_cols=35 Identities=6% Similarity=-0.044 Sum_probs=22.0
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHH
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFV 88 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~ 88 (181)
+.|. ..|||.|......|.++ ++.+.-|..+....
T Consensus 19 ~vy~-~~~Cp~C~~ak~~L~~~-------~i~y~~idI~~~~~ 53 (99)
T 3qmx_A 19 EIYT-WSTCPFCMRALALLKRK-------GVEFQEYCIDGDNE 53 (99)
T ss_dssp EEEE-CTTCHHHHHHHHHHHHH-------TCCCEEEECTTCHH
T ss_pred EEEE-cCCChhHHHHHHHHHHC-------CCCCEEEEcCCCHH
Confidence 3344 88999998766555543 56666666665433
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.016 Score=37.43 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=15.4
Q ss_pred EEEEeeCCCCCCChhHHHHHHHH
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKL 67 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l 67 (181)
++.|+ +.|||.|....+.|.++
T Consensus 14 v~~f~-~~~C~~C~~~~~~L~~~ 35 (105)
T 1kte_A 14 VVVFI-KPTCPFCRKTQELLSQL 35 (105)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHS
T ss_pred EEEEE-cCCCHhHHHHHHHHHHc
Confidence 44455 88999998776666543
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.041 Score=39.76 Aligned_cols=38 Identities=5% Similarity=-0.130 Sum_probs=29.9
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
++++|+.|| ..|||+|....+.+.++.+++ ++.+.-+.
T Consensus 22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p 59 (185)
T 3feu_A 22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA---GTDIGKMH 59 (185)
T ss_dssp CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH---TSCCEEEE
T ss_pred CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh---CCeEEEEe
Confidence 578888888 779999999889999998888 34444443
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.013 Score=42.46 Aligned_cols=42 Identities=5% Similarity=0.017 Sum_probs=30.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEec
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~ 83 (181)
.++++|+.|| ..|||+|....+.+ .++.+++.+ ++.++-+..
T Consensus 13 ~~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 57 (189)
T 3l9v_A 13 VDAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHV 57 (189)
T ss_dssp TTCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEEC
T ss_pred CCCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEec
Confidence 3578888888 88999999888876 456555553 566666654
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=93.18 E-value=1.7 Score=36.23 Aligned_cols=111 Identities=11% Similarity=0.136 Sum_probs=65.1
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
.+|..+|+.-+. .+| +.+++-|+-|. .+||.+ . . -........+.. ...++.+-.+
T Consensus 421 ~pG~r~p~~~l~----------~~~----~~~~~~dl~g~~f~ll~~--~---~-~~~~~~~~~~~~---~~~~~~~~~~ 477 (535)
T 3ihg_A 421 RPGFRGPHVLVS----------RHG----ERLSTVDLFGDGWTLLAG--E---L-GADWVAAAEAVS---AELGVPVRAY 477 (535)
T ss_dssp CTTSBCCCCEEE----------ETT----EEEEGGGGCSSSEEEEEC--T---T-CHHHHHHHHHHH---HHHTCCEEEE
T ss_pred CCCCcCCCceee----------cCC----ceeeHHHhcCCceEEEec--C---C-ccHHHHHHHHHH---HhcCCceEEE
Confidence 578889988875 246 77888888675 566653 1 1 111111112222 2235433333
Q ss_pred ecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 82 SSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
...+ + +.|..+.+++.|++. ....+||-|||.|.++.. ..+.....++.+++
T Consensus 478 ~~~~---------------~-----~~d~~~~~~~~~~~~------~~~~~lvRPD~~va~r~~--~~~~~~~~~l~~~~ 529 (535)
T 3ihg_A 478 RVGA---------------G-----LTDPESAVSERYGIG------KAGASLVRPDGIVAWRTD--EAAADAAQTLEGVL 529 (535)
T ss_dssp EBTT---------------T-----BBCSSCCHHHHHTCT------TTCEEEECTTSBEEEEES--SCCSSHHHHHHHHH
T ss_pred EeCC---------------c-----cccCcchHHHHhCCC------CCceEeeCCCceeEEecC--CCCCCHHHHHHHHH
Confidence 3322 1 457788999999985 246899999999999983 22333344555555
Q ss_pred Hhh
Q psy2878 162 DAI 164 (181)
Q Consensus 162 ~~l 164 (181)
..+
T Consensus 530 ~~~ 532 (535)
T 3ihg_A 530 RRV 532 (535)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=2.8 Score=36.20 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=79.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCC-CC--CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-----
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESS-FP--GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE----- 73 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~-~~--gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~----- 73 (181)
+.+|..+|++.+.. ..+| ++++|.+ +. |+++||.|- +. .........+.++.+.+..
T Consensus 479 ~~~G~r~p~~~~~~--------~~~g----~~~~l~~~l~~~g~~~ll~~~-~~--~~~~~~~~~~~~~~~~l~~~~~~~ 543 (665)
T 1pn0_A 479 CVVGTRFKSQPVVR--------HSEG----LWMHFGDRLVTDGRFRIIVFA-GK--ATDATQMSRIKKFAAYLDSENSVI 543 (665)
T ss_dssp SCTTSBCCCCEEEE--------TTTT----EEEEGGGGCCCSSCEEEEEEE-EC--TTSHHHHHHHHHHHHHHHSTTSHH
T ss_pred CCCcCCCCCCeEEe--------cCCC----cEEEHhHhhccCCCEEEEEec-CC--cccchhHHHHHHHHHHhhccccHH
Confidence 35799999998862 2477 8888877 43 688888874 22 1112334555555555531
Q ss_pred -----------cCcEEEEEecCCHHHHHHHHHHcCC-Cc--ccc-eeEEEc------CCchHHHHhCCCCCCCcceeeEE
Q psy2878 74 -----------RNAILLGGSSDNEFVKLAWRRENSN-LY--KLN-HWQFSD------TNGSLIDQLGIRHETGVALRATF 132 (181)
Q Consensus 74 -----------~~~~vi~Is~d~~~~~~~~~~~~~~-~~--~~~-~~~~~D------~~~~~~~~~gv~~~~g~~~p~~~ 132 (181)
.-+.++.|...+.... + ...... .. +.. ..++.| ..+.+++.||+... ..+.+
T Consensus 544 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~----~g~~v 617 (665)
T 1pn0_A 544 SRYTPKGADRNSRIDVITIHSCHRDDI-E-MHDFPAPALHPKWQYDFIYADCDSWHHPHPKSYQAWGVDET----KGAVV 617 (665)
T ss_dssp HHHSBTTSCTTSSEEEEEEESSCTTSC-C-GGGSCTTTTSCTTCCSSEEECSCCSSSCCCCHHHHHTBCTT----TCEEE
T ss_pred hhcCCcccCccceeEEEEEecCCCCcc-c-hhhCCHHHcCcccchheEeecCcccccccccHHHHcCCCCC----CceEE
Confidence 1267777754432111 0 001100 00 001 345667 34679999997411 24779
Q ss_pred EEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 133 IFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 133 liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
||-|||.|.++.. ..+.+++.+.+....
T Consensus 618 lvRPD~yV~~~~~-----~~~~~~l~~~~~~~~ 645 (665)
T 1pn0_A 618 VVRPDGYTSLVTD-----LEGTAEIDRYFSGIL 645 (665)
T ss_dssp EECTTSBEEEEEC-----TTTHHHHHHHHHTTB
T ss_pred EECCCCcEEEEec-----cccHHHHHHHHHHHh
Confidence 9999999998772 234677777776654
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.15 Score=32.94 Aligned_cols=27 Identities=4% Similarity=-0.308 Sum_probs=17.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 52 DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 52 ~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.|||.|....+.|.++ ++.+.-+..+.
T Consensus 30 ~~C~~C~~~~~~L~~~-------~i~~~~vdi~~ 56 (105)
T 2yan_A 30 AKCGFSKQILEILNST-------GVEYETFDILE 56 (105)
T ss_dssp BCTTHHHHHHHHHHHH-------TCCCEEEEGGG
T ss_pred CCCccHHHHHHHHHHC-------CCCeEEEECCC
Confidence 8999998666555443 56666666553
|
| >1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.63 Score=29.22 Aligned_cols=41 Identities=5% Similarity=-0.125 Sum_probs=21.9
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 50 PKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 50 ~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
..++||.|. ....=.+..+.+.+.|+.+.-+..+.....++
T Consensus 8 ~~~~C~~c~-~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~ 48 (93)
T 1t1v_A 8 STSVTGSRE-IKSQQSEVTRILDGKRIQYQLVDISQDNALRD 48 (93)
T ss_dssp ECSSCSCHH-HHHHHHHHHHHHHHTTCCCEEEETTSCHHHHH
T ss_pred EcCCCCCch-hhHHHHHHHHHHHHCCCceEEEECCCCHHHHH
Confidence 378999993 11111123333555677777777654333333
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.15 Score=33.37 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=19.0
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
|+.|+ ..|||.|....+.|.+ .++.+--+..+
T Consensus 21 v~vy~-~~~Cp~C~~~~~~L~~-------~~i~~~~~di~ 52 (113)
T 3rhb_A 21 VVIYS-KTWCSYCTEVKTLFKR-------LGVQPLVVELD 52 (113)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHH-------TTCCCEEEEGG
T ss_pred EEEEE-CCCChhHHHHHHHHHH-------cCCCCeEEEee
Confidence 33344 8899999866655543 35554445444
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.11 Score=33.51 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=15.0
Q ss_pred EEEEeeCCCCCCChhHHHHHHHH
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKL 67 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l 67 (181)
++.|+ +.|||.|....+.|.++
T Consensus 24 v~ly~-~~~Cp~C~~ak~~L~~~ 45 (103)
T 3nzn_A 24 VIMYG-LSTCVWCKKTKKLLTDL 45 (103)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHH
T ss_pred EEEEc-CCCCchHHHHHHHHHHc
Confidence 44444 88999998776655543
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=92.31 E-value=0.19 Score=30.47 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=18.7
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 50 PKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 50 ~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+.|||.|......|.+ .++.+.-+..+.
T Consensus 7 ~~~~C~~C~~~~~~l~~-------~~i~~~~~~i~~ 35 (82)
T 1fov_A 7 TKETCPYCHRAKALLSS-------KGVSFQELPIDG 35 (82)
T ss_dssp ECSSCHHHHHHHHHHHH-------HTCCCEEEECTT
T ss_pred ECCCChhHHHHHHHHHH-------CCCCcEEEECCC
Confidence 37899999876655543 256555555553
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=91.89 E-value=0.41 Score=31.12 Aligned_cols=28 Identities=4% Similarity=-0.250 Sum_probs=19.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCH
Q psy2878 52 DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNE 86 (181)
Q Consensus 52 ~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~ 86 (181)
.|||.|......|. +.++.+.-|..+..
T Consensus 28 ~~Cp~C~~ak~~L~-------~~~i~~~~vdi~~~ 55 (109)
T 1wik_A 28 AKCGFSKQILEILN-------STGVEYETFDILED 55 (109)
T ss_dssp CCSSTHHHHHHHHH-------HTCSCEEEEESSSC
T ss_pred CCCchHHHHHHHHH-------HcCCCeEEEECCCC
Confidence 89999986554443 44777777777653
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.22 Score=31.02 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=20.8
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
++.|+ ..|||.|+...+.|. +.++.+.-+..+.
T Consensus 8 v~ly~-~~~C~~C~~~~~~L~-------~~~i~~~~~di~~ 40 (92)
T 2khp_A 8 VIIYT-RPGCPYCARAKALLA-------RKGAEFNEIDASA 40 (92)
T ss_dssp EEEEE-CTTCHHHHHHHHHHH-------HTTCCCEEEESTT
T ss_pred EEEEE-CCCChhHHHHHHHHH-------HcCCCcEEEECCC
Confidence 33444 789999986555444 3466666666664
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=91.42 E-value=0.36 Score=31.71 Aligned_cols=29 Identities=7% Similarity=-0.070 Sum_probs=18.1
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
|..+|||.|......|.+ .|+.+-.+..|
T Consensus 22 y~~~~Cp~C~~ak~~L~~-------~~i~~~~~dvd 50 (114)
T 3h8q_A 22 FSKSYCPHSTRVKELFSS-------LGVECNVLELD 50 (114)
T ss_dssp EECTTCHHHHHHHHHHHH-------TTCCCEEEETT
T ss_pred EEcCCCCcHHHHHHHHHH-------cCCCcEEEEec
Confidence 348899999765544443 35555555555
|
| >2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19 | Back alignment and structure |
|---|
Probab=90.75 E-value=2.8 Score=32.15 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=24.9
Q ss_pred EEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 44 KIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 44 ~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+.|..|.+.+||.|+.--..|.++..+ .++..+.+..+
T Consensus 44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~---~~vi~l~~~v~ 81 (270)
T 2axo_A 44 GVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD 81 (270)
T ss_dssp CEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred cEEEEEeCCCCCChHHHHHHHHHhhcc---CCeeeEEEEEE
Confidence 555556688999999777777766543 35544455543
|
| >2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.20 E-value=2.2 Score=27.79 Aligned_cols=44 Identities=5% Similarity=-0.079 Sum_probs=25.1
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 50 PKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 50 ~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
..++||.|.. ...-+++.+.+++.++.+.-|..+.....++.+.
T Consensus 14 ~~~~C~~C~~-~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~ 57 (111)
T 2ct6_A 14 IASSSGFVAI-KKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMY 57 (111)
T ss_dssp ECSSCSCHHH-HHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHH
T ss_pred EcCCCCCccc-chhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 3789999972 1112233334556678887777765444444343
|
| >3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A | Back alignment and structure |
|---|
Probab=89.03 E-value=0.13 Score=37.22 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=30.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEe
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGS 82 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is 82 (181)
.++++|+.|+ ..+||+|....+.+ .++.+++.+ ++.++-+.
T Consensus 20 ~~~~~vvef~-d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~ 63 (191)
T 3l9s_A 20 AGEPQVLEFF-SFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYH 63 (191)
T ss_dssp CSSSCEEEEE-CTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEE
T ss_pred CCCCeEEEEE-CCCChhHHHhChhccchHHHHHhCCC-CcEEEEEe
Confidence 4578888887 77899999888876 577777764 46665554
|
| >3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A | Back alignment and structure |
|---|
Probab=88.91 E-value=0.43 Score=33.94 Aligned_cols=43 Identities=2% Similarity=-0.058 Sum_probs=31.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHH-HHHHHHHHhcCcEEEEEecC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEY-NKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l-~~l~~~~~~~~~~vi~Is~d 84 (181)
.++++++.|| ...||.|....+.+ .++.+++.. .+.+..+...
T Consensus 16 ~~~~~~ief~-d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l~ 59 (195)
T 3c7m_A 16 NADKTLIKVF-SYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHLE 59 (195)
T ss_dssp SCTTEEEEEE-CTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEECT
T ss_pred CCCcEEEEEE-eCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEecC
Confidence 3567788887 58899999888888 888777653 4666666543
|
| >3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12 | Back alignment and structure |
|---|
Probab=88.60 E-value=0.66 Score=30.95 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=41.9
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--C--CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--D--NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.+|...+|+.|+.... .++++|+.+-.+.. + +.+.+.++.... +.++.-+....+...+..+..
T Consensus 2 i~iY~~~~C~~c~ka~~-------~L~~~gi~~~~~di~~~~~~~~el~~~l~~~----~~~~~~l~n~~~~~~k~l~~~ 70 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARA-------WLNRHDVVFQEHNIMTSPLSRDELLKILSYT----ENGTEDIISTRSKVFQKLDID 70 (120)
T ss_dssp EEEEECSSCHHHHHHHH-------HHHHTTCCEEEEETTTSCCCHHHHHHHHHHC----SSTHHHHBCTTCHHHHHTTCC
T ss_pred EEEEeCCCCHHHHHHHH-------HHHHcCCCeEEEecccCCCcHHHHHHHHhhc----CCCHHHhhcCCcHHHHHcCCC
Confidence 34555778999975543 34556776666654 3 367778888765 555555566677777777653
|
| >1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A | Back alignment and structure |
|---|
Probab=88.51 E-value=2.5 Score=28.38 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=27.5
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRE 95 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~ 95 (181)
.|.++.||.|.. ...=.+...-+..+|+.+--|..+.....++++.+
T Consensus 4 vYtt~~c~~c~~-kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~ 50 (121)
T 1u6t_A 4 VYIASSSGSTAI-KKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRE 50 (121)
T ss_dssp EEECTTCSCHHH-HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHH
T ss_pred EEecCCCCCccc-hHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH
Confidence 344888999931 11222333446777888888887654444554544
|
| >3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.92 E-value=0.55 Score=36.23 Aligned_cols=40 Identities=10% Similarity=0.127 Sum_probs=29.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
.|+.+|+.|+ -..||+|+...+.+.+..+ +-.+.++.+..
T Consensus 146 ~gk~~I~vFt-Dp~CPYCkkl~~~l~~~l~---~~~Vr~i~~Pi 185 (273)
T 3tdg_A 146 NKDKILYIVS-DPMCPHCQKELTKLRDHLK---ENTVRMVVVGW 185 (273)
T ss_dssp GTTCEEEEEE-CTTCHHHHHHHHTHHHHHH---HCEEEEEECCC
T ss_pred CCCeEEEEEE-CcCChhHHHHHHHHHHHhh---CCcEEEEEeec
Confidence 3678888887 6679999999998887654 34566666654
|
| >3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=87.69 E-value=0.91 Score=30.31 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=41.9
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--C--CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--D--NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+.+|...+|+.|+....- ++++|+.+-.+.. + +.+.+.+|.... +.++.-+....+...+..+.
T Consensus 5 i~iY~~~~C~~c~ka~~~-------L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~l~n~~~~~~k~l~l 72 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAKAE-------LDDLAWDYDAIDIKKNPPAASLIRNWLENS----GLELKKFFNTSGQSYRALGL 72 (120)
T ss_dssp EEEEECSSCHHHHHHHHH-------HHHHTCCEEEEETTTSCCCHHHHHHHHHHS----CCCGGGGBCTTSHHHHHTTH
T ss_pred EEEEeCCCChHHHHHHHH-------HHHcCCceEEEEeccCchhHHHHHHHHHHc----CCCHHHHhCCCCcchhhcCc
Confidence 455657789999855533 4455666655543 3 367888888876 66666566667777777664
|
| >1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A | Back alignment and structure |
|---|
Probab=87.56 E-value=1.1 Score=27.61 Aligned_cols=29 Identities=10% Similarity=-0.100 Sum_probs=18.3
Q ss_pred eeCC----CCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 49 YPKD----FTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 49 ~~~~----~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
|... +||.|...... +++.|+.+--+..+
T Consensus 5 Y~~~~~~~~Cp~C~~ak~~-------L~~~gi~y~~idI~ 37 (87)
T 1aba_A 5 YGYDSNIHKCGPCDNAKRL-------LTVKKQPFEFINIM 37 (87)
T ss_dssp EECCTTTSCCHHHHHHHHH-------HHHTTCCEEEEESC
T ss_pred EEeCCCCCcCccHHHHHHH-------HHHcCCCEEEEEee
Confidence 4478 89999754433 34456766666665
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=87.46 E-value=0.96 Score=27.52 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=12.4
Q ss_pred EEEeeCCCCCCChhHHHHH
Q psy2878 46 FYFYPKDFTFVCPTEISEY 64 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l 64 (181)
+.+|...|||.|......|
T Consensus 6 v~ly~~~~Cp~C~~~~~~L 24 (89)
T 3msz_A 6 VKIYTRNGCPYCVWAKQWF 24 (89)
T ss_dssp EEEEECTTCHHHHHHHHHH
T ss_pred EEEEEcCCChhHHHHHHHH
Confidence 3344488999998655444
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=87.14 E-value=1.1 Score=37.77 Aligned_cols=52 Identities=8% Similarity=0.210 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 88 VKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
..++.+..+.....+.++.+.|.+..+.+.||+. ..|+.++++++|++....
T Consensus 171 ~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kfgV~-----~~Pslvl~~~nGk~~~~~ 222 (519)
T 3t58_A 171 LGREVTLDLSQYHAVAVRRVLNTESDLVNKFGVT-----DFPSCYLLLRNGSVSRVP 222 (519)
T ss_dssp HHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCC-----CSSEEEEEETTSCEEECC
T ss_pred HHHHHHHHhhccCCeeEEEecCchHHHHHHcCCC-----CCCeEEEEeCCCceeecc
Confidence 4455555654445677888888889999999997 568999999999987665
|
| >1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A | Back alignment and structure |
|---|
Probab=86.83 E-value=0.86 Score=30.84 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=38.6
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--CC--HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--DN--EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.+|...+|+.|......| .+.|+.+-.+.. ++ .+.+.++.... +.++.-+....+...+..+.
T Consensus 4 ~lY~~~~C~~C~ka~~~L-------~~~gi~y~~~di~~~~~~~~el~~~l~~~----~~~~~~l~n~~~~~~k~l~~ 70 (132)
T 1z3e_A 4 TLYTSPSCTSCRKARAWL-------EEHEIPFVERNIFSEPLSIDEIKQILRMT----EDGTDEIISTRSKVFQKLNV 70 (132)
T ss_dssp EEEECTTCHHHHHHHHHH-------HHTTCCEEEEETTTSCCCHHHHHHHHHTC----SSCGGGTBCTTSHHHHHHCC
T ss_pred EEEeCCCChHHHHHHHHH-------HHcCCceEEEEccCCCccHHHHHHHHHHc----CCCHHHhhcCCchHHHhcCc
Confidence 345578899998555433 345776655554 32 46667776654 45555555666777777664
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=86.77 E-value=3.2 Score=35.57 Aligned_cols=139 Identities=12% Similarity=0.172 Sum_probs=73.7
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC---CCCeEEEEEeeCCCCCCCh-hHHHHHHHHH--------HH
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF---PGKWKIFYFYPKDFTFVCP-TEISEYNKLV--------KD 70 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~---~gk~~ll~F~~~~~cp~C~-~~~~~l~~l~--------~~ 70 (181)
.+|..+|+..+.. ..+| ++++|.++ .|+++||.|- +...+.+. ..+..+.+.. ..
T Consensus 468 ~~G~r~p~~~~~~--------~~~g----~~~~l~~~~~~~g~~~ll~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 534 (639)
T 2dkh_A 468 TVGMRFHSAPVVR--------VCDA----KPVQLGHCGKADGRWRLYAFA-AQNDLAQPESGLLALCRFLEGDAASPLRR 534 (639)
T ss_dssp CTTSBCCCCEEEE--------TTTC----CEEEGGGGCCSSSCEEEEEEC-CTTTTTCTTSHHHHHHHHHHHCTTCHHHH
T ss_pred CCcCCCCCCeEEe--------cCCC----CEEEHHHhhccCCCEEEEEec-CCCCchhhHHHHHHHHHHHhhCCccHHHh
Confidence 4799999998862 2467 78888774 3688888874 32233333 2333333222 12
Q ss_pred HHhc------CcEEEEEecCCHHHH--HH---HHHHcCCCccc-c-eeEEEcCC----chHHHHhCCCCCCCcceeeEEE
Q psy2878 71 FNER------NAILLGGSSDNEFVK--LA---WRRENSNLYKL-N-HWQFSDTN----GSLIDQLGIRHETGVALRATFI 133 (181)
Q Consensus 71 ~~~~------~~~vi~Is~d~~~~~--~~---~~~~~~~~~~~-~-~~~~~D~~----~~~~~~~gv~~~~g~~~p~~~l 133 (181)
|... -+.++.|...+.... .. .........+. . ..++.|.. +.+.+.||+... ..+.+|
T Consensus 535 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~~~~----~g~~v~ 610 (639)
T 2dkh_A 535 FTPAGQDIDSIFDLRAVFPQAYTEVALETLPALLLPPKGQLGMIDYEKVFSPDLKNAGQDIFELRGIDRQ----QGALVV 610 (639)
T ss_dssp HSCTTSCTTSSEEEEEECSSCGGGCCGGGSCGGGSCEETTTTEECCCSEEECCCSSTTCCHHHHTTBCTT----TCEEEE
T ss_pred cCCCCCCcCceEEEEEEecCCCCccchhhCcHhhCCcccccccccceeEEeCCCcccccchHHHhCCCCC----ceEEEE
Confidence 3111 257777754432110 00 00000000011 1 35667732 568888997411 247899
Q ss_pred EcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 134 FDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 134 iD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
|-|||.|-++.. ..+.+.+.+.+..
T Consensus 611 vRPD~yv~~~~~-----~~~~~~l~~~~~~ 635 (639)
T 2dkh_A 611 VRPDQYVAQVLP-----LGDHAALSAYFES 635 (639)
T ss_dssp ECTTSBEEEEEC-----TTCHHHHHHHHHT
T ss_pred ECCCCceEEeec-----hhhHHHHHHHHHH
Confidence 999999987762 1345555555543
|
| >2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A | Back alignment and structure |
|---|
Probab=86.07 E-value=0.66 Score=31.74 Aligned_cols=27 Identities=0% Similarity=-0.256 Sum_probs=16.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 52 DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 52 ~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.|||.|......| .+.|+.+..|..+.
T Consensus 48 ~~Cp~C~~ak~~L-------~~~gv~y~~vdI~~ 74 (135)
T 2wci_A 48 PSCGFSAQAVQAL-------AACGERFAYVDILQ 74 (135)
T ss_dssp BSSHHHHHHHHHH-------HTTCSCCEEEEGGG
T ss_pred CCCccHHHHHHHH-------HHcCCceEEEECCC
Confidence 6899887544433 34467666666653
|
| >3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.98 E-value=1.7 Score=28.86 Aligned_cols=43 Identities=2% Similarity=-0.160 Sum_probs=21.6
Q ss_pred CeEEEEEeeC---CCCCCChhHHHHHHHHHHHHHhcCcE---EEEEecCCHHHHHH
Q psy2878 42 KWKIFYFYPK---DFTFVCPTEISEYNKLVKDFNERNAI---LLGGSSDNEFVKLA 91 (181)
Q Consensus 42 k~~ll~F~~~---~~cp~C~~~~~~l~~l~~~~~~~~~~---vi~Is~d~~~~~~~ 91 (181)
..++|+.-.+ .|||.|......|.+ .|+. +.-+..+.....++
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~-------~gv~~~~~~~~dv~~~~~~~~ 64 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGN-------QGVDPAKFAAYNVLEDPELRE 64 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHH-------HTBCGGGEEEEECTTCHHHHH
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHH-------cCCCcceEEEEEecCCHHHHH
Confidence 3455554311 288888755544433 3555 55555544333333
|
| >3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=85.77 E-value=0.85 Score=30.46 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=40.8
Q ss_pred EEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--C--CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 46 FYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--D--NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 46 l~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
|.+|...+|+.|+.... .++++|+.+-.+.. + +.+.+.+|.... +.++.-+....+...+.++.
T Consensus 6 i~iY~~p~C~~c~ka~~-------~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~l~n~~~~~~k~l~l 73 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKK-------WLIENNIEYTNRLIVDDNPTVEELKAWIPLS----GLPVKKFFNTSGVVYKELKL 73 (120)
T ss_dssp CEEEECTTCHHHHHHHH-------HHHHTTCCCEEEETTTTCCCHHHHHHHHHHH----TSCGGGGBCTTSHHHHHTTH
T ss_pred EEEEECCCChHHHHHHH-------HHHHcCCceEEEecccCcCCHHHHHHHHHHc----CCCHHHeEeCCCchhhhcCc
Confidence 44555778999975553 34455665555543 4 467888888876 65555556666777776663
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=85.68 E-value=0.96 Score=30.47 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=10.6
Q ss_pred EEEEeeCCCCCCChhH
Q psy2878 45 IFYFYPKDFTFVCPTE 60 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~ 60 (181)
|++|+ ..|||.|...
T Consensus 39 Vvvy~-~~~Cp~C~~a 53 (129)
T 3ctg_A 39 VFVAA-KTYCPYCKAT 53 (129)
T ss_dssp EEEEE-CTTCHHHHHH
T ss_pred EEEEE-CCCCCchHHH
Confidence 34444 8899999855
|
| >3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A | Back alignment and structure |
|---|
Probab=85.29 E-value=0.96 Score=29.42 Aligned_cols=26 Identities=8% Similarity=-0.110 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 53 FTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 53 ~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+||.|...... +.+.|+.+-.+..+.
T Consensus 32 ~Cp~C~~ak~~-------L~~~gi~~~~~dI~~ 57 (109)
T 3ipz_A 32 MCGFSNTVVQI-------LKNLNVPFEDVNILE 57 (109)
T ss_dssp SSHHHHHHHHH-------HHHTTCCCEEEEGGG
T ss_pred CChhHHHHHHH-------HHHcCCCcEEEECCC
Confidence 78888754433 334466666666543
|
| >3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.13 E-value=0.92 Score=29.73 Aligned_cols=35 Identities=6% Similarity=-0.101 Sum_probs=20.6
Q ss_pred CeEEEEEeeC-----CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 42 KWKIFYFYPK-----DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 42 k~~ll~F~~~-----~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+++|+. . .+||.|.....-|. +.|+.+.-+..+.
T Consensus 16 ~~Vvlf~--kg~~~~~~Cp~C~~ak~~L~-------~~gi~y~~~di~~ 55 (111)
T 3zyw_A 16 APCMLFM--KGTPQEPRCGFSKQMVEILH-------KHNIQFSSFDIFS 55 (111)
T ss_dssp SSEEEEE--SBCSSSBSSHHHHHHHHHHH-------HTTCCCEEEEGGG
T ss_pred CCEEEEE--ecCCCCCcchhHHHHHHHHH-------HcCCCeEEEECcC
Confidence 4465554 4 78999975554333 4466665565543
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=84.82 E-value=3.1 Score=32.94 Aligned_cols=105 Identities=8% Similarity=0.028 Sum_probs=59.2
Q ss_pred eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 43 WKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 43 ~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
..++.|+ ..+|+.|...+..|.++.++++.+ .+.++-|..+.......+ +.+.||+.
T Consensus 249 ~~~~~f~-~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~---------------------~~~~fgl~ 306 (367)
T 3us3_A 249 IHIVAFA-EEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPY---------------------WEKTFDID 306 (367)
T ss_dssp EEEEEEC-CTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHH---------------------HHHHHTCC
T ss_pred cEEEEEE-cCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHH---------------------HHHhcCCC
Confidence 4455565 444555666667777777777764 356655554431111111 12346663
Q ss_pred CCCCcceeeEEEEcCCCc--EEEEEeccCCCCCCHHHHHHHHHhhccCCccccCC
Q psy2878 122 HETGVALRATFIFDPQNI--IQHITVNNLNVGRNPIETLRILDAIQTGKLCACNR 174 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~--i~~~~~~~~~~~~~~~~ll~~l~~l~~~~~~~~~~ 174 (181)
...|+..+++.... ..|.. ......-..+.|.+.++.+..|+..|.+-
T Consensus 307 ----~~~P~~~i~~~~~~~~~~y~~-~~~~~~~t~~~i~~F~~~~~~Gkl~p~~~ 356 (367)
T 3us3_A 307 ----LSAPQIGVVNVTDADSVWMEM-DDEEDLPSAEELEDWLEDVLEGEINTEDD 356 (367)
T ss_dssp ----TTSCEEEEEETTTCCEEECCC-CTTSCCCCHHHHHHHHHHHHHTSSCC---
T ss_pred ----CCCCeEEEEecccccceeecC-CcccccCCHHHHHHHHHHHHcCCcCcccc
Confidence 13578889986644 23323 11122457889999999999998888664
|
| >3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=80.71 E-value=11 Score=25.80 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=25.0
Q ss_pred ceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 127 ALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 127 ~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+.|+.-|+ +||++++..--..-.++..+.|.+.|..
T Consensus 106 SSPS~ALf-KdGelVh~ieRh~IEGr~a~~Ia~~L~~ 141 (147)
T 3fhk_A 106 SSPSMALL-KGKEVVHFIPRHEIEGHDMEEIMKNLTA 141 (147)
T ss_dssp CSSEEEEE-ETTEEEEEECGGGTTTSCHHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHH
Confidence 46777788 7999998874222335677777776654
|
| >1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A | Back alignment and structure |
|---|
Probab=80.61 E-value=1.2 Score=30.71 Aligned_cols=64 Identities=8% Similarity=-0.040 Sum_probs=40.3
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--C--CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 47 YFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--D--NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 47 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
.+|...+|+.|+... +.++++|+.+-.+.. + +.+.+.++.... +.+..-+....+...+.++..
T Consensus 5 tiY~~p~C~~crkak-------~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~~----g~p~~~l~n~~~~~yk~l~l~ 72 (141)
T 1s3c_A 5 TIYHNPASGTSRNTL-------EMIRNSGTEPTIILYLENPPSRDELVKLIADM----GISVRALLRKNVEPYEQLGLA 72 (141)
T ss_dssp EEECCTTCHHHHHHH-------HHHHHTTCCCEEECTTTSCCCHHHHHHHHHHH----TSCHHHHBCSSSHHHHHTTTT
T ss_pred EEEECCCChHHHHHH-------HHHHHcCCCEEEEECCCCCccHHHHHHHhccc----CCCHHHhccCCchhHHhcCCc
Confidence 355577898887544 334556776655654 3 356777777765 555444455677777777754
|
| >2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A | Back alignment and structure |
|---|
Probab=80.55 E-value=0.28 Score=24.13 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHHHHHHh
Q psy2878 53 FTFVCPTEISEYNKLVKDFNE 73 (181)
Q Consensus 53 ~cp~C~~~~~~l~~l~~~~~~ 73 (181)
-||.|..++|.++.+..-|++
T Consensus 5 ~CpvCk~q~Pd~kt~~~H~e~ 25 (28)
T 2jvx_A 5 CCPKCQYQAPDMDTLQIHVME 25 (28)
T ss_dssp ECTTSSCEESSHHHHHHHHHH
T ss_pred cCccccccCcChHHHHHHHHH
Confidence 499999999999988877764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 181 | ||||
| d1uula_ | 194 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 1e-38 | |
| d1zyea1 | 158 | c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) | 2e-32 | |
| d1qmva_ | 197 | c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox | 4e-32 | |
| d1we0a1 | 166 | c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase | 5e-32 | |
| d2h01a1 | 170 | c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio | 3e-31 | |
| d1zofa1 | 170 | c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He | 8e-31 | |
| d1n8ja_ | 186 | c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC | 4e-30 | |
| d2zcta1 | 237 | c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni | 6e-29 | |
| d1e2ya_ | 167 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 5e-28 | |
| d2bmxa1 | 169 | c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase | 2e-27 | |
| d1xcca_ | 219 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe | 1e-26 | |
| d1prxa_ | 220 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa | 2e-24 | |
| d1hd2a_ | 161 | c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien | 1e-14 | |
| d1q98a_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i | 6e-14 | |
| d1psqa_ | 163 | c.47.1.10 (A:) Probable thiol peroxidase PsaD {Str | 2e-13 | |
| d1qxha_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c | 3e-11 | |
| d1xvwa1 | 153 | c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c | 5e-11 | |
| d1xvqa_ | 166 | c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium | 1e-10 | |
| d2a4va1 | 156 | c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's y | 2e-10 | |
| d2cx4a1 | 160 | c.47.1.10 (A:4-163) Bacterioferritin comigratory p | 1e-09 | |
| d1tp9a1 | 162 | c.47.1.10 (A:1-162) Plant peroxiredoxin {Western b | 4e-07 | |
| d1nm3a2 | 163 | c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybr | 5e-07 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 3e-05 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 8e-05 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 0.001 |
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Score = 129 bits (324), Expect = 1e-38
Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 8/172 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P FN FK + +S+ GKW + +FYP DFTFVCPTEI +++ VK+F++
Sbjct: 10 PDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCE 69
Query: 78 LLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFI 133
+L S D+E+ LAW R+ L ++N +D ++ G+ E GVA R FI
Sbjct: 70 VLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFI 129
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
DP+ ++ ITVN+L VGR+ E LR++ A Q G++C N KT+
Sbjct: 130 IDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWKPGDKTM 181
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Score = 111 bits (279), Expect = 2e-32
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F + FK I+ F GK+ + +FYP DFTFVCPTEI ++ +F++ N
Sbjct: 4 PYFKGTAVVS-GEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCE 62
Query: 78 LLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQL-GIRHETGVALRATFI 133
++ S D+ F LAW R+N L +N SD + + G+ALR FI
Sbjct: 63 VVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI 122
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166
DP +I+H++VN+L VGR+ ETLR++ A Q
Sbjct: 123 IDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQF 155
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 4e-32
Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 10/177 (5%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
IG P F + AFK + S + GK+ + +FYP DFTFVCPTEI ++ +DF
Sbjct: 7 IGKPAPDFKATAVVD-GAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFR 65
Query: 73 ERNAILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLG-IRHETGVAL 128
+ +LG S D++F LAW R+ L LN +D L + G ++ + G+A
Sbjct: 66 KLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAY 125
Query: 129 RATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181
R FI D + +++ ITVN+L VGR+ E LR++ A Q G++C T+
Sbjct: 126 RGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTI 182
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Score = 111 bits (277), Expect = 5e-32
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 13 VIGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDF 71
+IG + F + F +TE+ GKW I FYP DF+FVCPTE+ + K +
Sbjct: 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAEL 61
Query: 72 NERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRA 130
+ + S+D FV AW + + + + D + ++ Q + +E TG+A R
Sbjct: 62 KKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRG 121
Query: 131 TFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT-----GKLC 170
TFI DP +IQ I +N +GR+ + + A Q G++C
Sbjct: 122 TFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVC 166
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Score = 109 bits (272), Expect = 3e-31
Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 18 PGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNA 76
P F + F ++ S F G K+ + YFYP DFTFVCP+EI +K + F ERN
Sbjct: 3 PSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNV 62
Query: 77 ILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFI 133
LLG S D++F LAW+ + + H SD + S+ + VALRA +
Sbjct: 63 ELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVL 122
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACN 173
D Q ++QH+ VNNL +GR+ E LR++DA+Q G +C N
Sbjct: 123 IDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPAN 166
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Score = 108 bits (269), Expect = 8e-31
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 9/162 (5%)
Query: 18 PGFNLPE-ENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75
P F P N + S GK I +F+PKDFTFVCPTEI ++K VKDF+E+
Sbjct: 8 PDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG 67
Query: 76 AILLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATF 132
++G S D+E V AW+ E + +++ +D S+ + E +ALR F
Sbjct: 68 FNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAF 127
Query: 133 IFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLC 170
+ D ++H +N+L +GRN E LR++DA+ G++C
Sbjct: 128 LIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVC 169
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Score = 106 bits (266), Expect = 4e-30
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
I K F N F +TE G+W +F+FYP DFTFV PTE+ + ++
Sbjct: 3 INTKIKPFKNQAFKN-GEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQ 61
Query: 73 ERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET-GVALRAT 131
+ + S+D F AW + + K+ + D G+L E G+A RAT
Sbjct: 62 KLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRAT 121
Query: 132 FIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ-----TGKLCACNRTLNGKTL 181
F+ DPQ IIQ I V +GR+ + LR + A Q G++C TL
Sbjct: 122 FVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATL 176
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Score = 105 bits (262), Expect = 6e-29
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
IG + P + ++ K+ GKW + + +P DFT VC TE + + +DF
Sbjct: 3 IGERFPEMEVTTDHG--VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQ 60
Query: 73 ERNAILLGGSSDNEFVKLAWRRENSN--LYKLNHWQFSDTNGSLIDQLGIRHETG--VAL 128
L+G S D+ F + W+ ++ +D G++ +LG+ H +
Sbjct: 61 RLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTV 120
Query: 129 RATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACN 173
R FI D + +I+ + + +GR E LRI+ A++ + +
Sbjct: 121 RGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPAD 169
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Score = 101 bits (251), Expect = 5e-28
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F+ FK ++ SS+ GK+ + +FYP DFTFVCPTEI +++ K F E N
Sbjct: 10 PEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTE 69
Query: 78 LLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFI 133
++ S D+E+ L W R+ L + +D ++ G+ E +GVA R FI
Sbjct: 70 VISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFI 129
Query: 134 FDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166
DP ++ I +N++ +GRN E +R+++A+Q
Sbjct: 130 IDPNGKLRQIIINDMPIGRNVEEVIRLVEALQF 162
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 99.4 bits (246), Expect = 2e-27
Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 1 MKTIGQSLSSYRVIGVKPG--FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCP 58
+ TIG +Y++ + G + + F IT PGKW++ +F+PKDFTFVCP
Sbjct: 2 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCP 61
Query: 59 TEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118
TEI+ ++KL +F +R+A +LG S D+EF WR ++++L L SD L
Sbjct: 62 TEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA 121
Query: 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166
G+ + GVA R TFI DP N IQ ++ +VGRN E LR+LDA+Q+
Sbjct: 122 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS 169
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 98.7 bits (245), Expect = 1e-26
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 16/170 (9%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F F+ W I + +P DFT VC TE++E K+ +DF + N
Sbjct: 9 PNFTAKASGIDGDFE--LYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCK 66
Query: 78 LLGGSSDNEFVKLAWR---RENSNLYKLNHWQFSDTNGSLIDQLGIRHE-------TGVA 127
L+G S +++ W + L K D + L ++L I E +
Sbjct: 67 LIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLT 126
Query: 128 LRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACN 173
R F P+ I+ + GRN E LR+L ++Q N
Sbjct: 127 CRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVN 176
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.9 bits (230), Expect = 2e-24
Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 21/181 (11%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F ++ W I + +P+DFT VC TE+ KL +F +RN
Sbjct: 8 PNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVK 63
Query: 78 LLGGSSDNEFVKLAWR------RENSNLYKLNHWQFSDTNGSLIDQLGIRHETG------ 125
L+ S D+ LAW KL D N L LG+
Sbjct: 64 LIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGM 123
Query: 126 -VALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT----GKLCACNRTLNGKT 180
V R F+F P ++ + GRN E LR++ ++Q +
Sbjct: 124 PVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSV 183
Query: 181 L 181
+
Sbjct: 184 M 184
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (159), Expect = 1e-14
Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 11/155 (7%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISE-YNKLVKDFNERNA 76
P + E + KV F GK + + P FT C + + + +
Sbjct: 10 PAVEVFEGEPGN--KVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV 67
Query: 77 ILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS-------LIDQLGIRHETGVALR 129
++ S N + ++ + +D G+ L+D + L+
Sbjct: 68 QVVACLSVN-DAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLK 126
Query: 130 ATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164
+ I++ + V G I+ +
Sbjct: 127 RFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 161
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Score = 64.1 bits (155), Expect = 6e-14
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 14/154 (9%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN 72
+G F L + + + F K K+ +P T VC T + ++N+ +
Sbjct: 18 VGEIVENFILVGND----LADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS 73
Query: 73 ERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETG----VAL 128
N I+L S+D F + + + N +L QLG+ +TG +
Sbjct: 74 --NTIVLCISADLPFAQARFCGAEGIEN--AKTVSTFRNHALHSQLGVDIQTGPLAGLTS 129
Query: 129 RATFIFDPQNIIQHI-TVNNLNVGRNPIETLRIL 161
RA + D QN + H V + N L +L
Sbjct: 130 RAVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL 163
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Score = 62.6 bits (151), Expect = 2e-13
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 1 MKTIGQSLSSYRVIGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPT 59
+ G+ L +G K F+L + + + F GK K+ P T +C T
Sbjct: 9 VSFTGKQLQ----VGDKALDFSLTTTD----LSKKSLADFDGKKKVLSVVPSIDTGICST 60
Query: 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119
+ +N+ + + L S D F + W + + D + D
Sbjct: 61 QTRRFNEELAGLDNTVV--LTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFG-RDYAL 117
Query: 120 IRHETGVALRATFIFDPQNIIQHI-TVNNLNVGRNPIETLRILDAI 164
+ +E + RA F+ D N I+++ V+N+N N + A+
Sbjct: 118 LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL 163
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Score = 56.8 bits (136), Expect = 3e-11
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 18/159 (11%)
Query: 1 MKTIGQSLSSYRVIGVK-PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPT 59
+ G K F L ++ +T F GK K+ +P T VC
Sbjct: 11 VTVANSIPQ----AGSKAQTFTLVAKD----LSDVTLGQFAGKRKVLNIFPSIDTGVCAA 62
Query: 60 EISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119
+ ++N+L + + N ++L S+D F + + + + N + G
Sbjct: 63 SVRKFNQLATEID--NTVVLCISADLPFAQSRFCGAEGLNNVITLS--TFRNAEFLQAYG 118
Query: 120 IRHETG----VALRATFIFDPQNIIQHITVNNLNVGRNP 154
+ G +A RA + D + + + + + P
Sbjct: 119 VAIADGPLKGLAARAVVVIDENDNVIFSQLVD-EITTEP 156
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 55.9 bits (133), Expect = 5e-11
Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 7/154 (4%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDF 71
+G P F L ++N +++T + G K + F+P FT +C E+ + + +F
Sbjct: 4 VGATAPDFTLRDQNQ----QLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEF 59
Query: 72 NERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRAT 131
++ L S W ++ + L F + G+A R T
Sbjct: 60 ENDDSAALAISVGPPPTHKIWATQSGFTFPLL-SDFWPHGAVSQAYGVFNEQAGIANRGT 118
Query: 132 FIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165
F+ D II+ + R+ L A+
Sbjct: 119 FVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 152
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 54.9 bits (131), Expect = 1e-10
Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 9/149 (6%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P F L + VI+ F GK + +P T VC T + +++
Sbjct: 24 PAFTLTGGD----LGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAASGATVLC 79
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE-TGVALRATFIFDP 136
S D F + + + F D+ G G+ RA +
Sbjct: 80 ---VSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGA 136
Query: 137 QNIIQHI-TVNNLNVGRNPIETLRILDAI 164
+ + V + N L L A
Sbjct: 137 DGNVAYTELVPEIAQEPNYEAALAALGAT 165
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (130), Expect = 2e-10
Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 15/158 (9%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFPG--KWKIFYFYPKDFTFVCPTEISEYNKLVKD 70
IG P +L E+N I+ + +F+ YP+ T + S + ++
Sbjct: 7 IGDPIPDLSLLNEDN----DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQE 62
Query: 71 FNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRH-ETGVALR 129
E A+ + +++ + L + SD I LG + ++R
Sbjct: 63 LKEYAAV-----FGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIR 117
Query: 130 ATFIF-DPQNIIQHITVN-NLNVGRNPIETLRILDAIQ 165
+ FIF D + + + ++ ++V E L + + +
Sbjct: 118 SHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFK 155
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 52.0 bits (123), Expect = 1e-09
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 14 IGVK-PGFNLPEENNVSAFKVITESSFP--GKWKIFYFYPKDFTFVCPTEISEYNKLVKD 70
+G K P F LP ++ F+ + G+ + F+P F+ VC E+ + +
Sbjct: 4 LGEKAPDFTLPNQD----FEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQ 59
Query: 71 FNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHE-----TG 125
+ NA +L S D+ + ++ EN +L SD N +I + HE
Sbjct: 60 LEKANAEVLAISVDSPWCLKKFKDEN----RLAFNLLSDYNREVIKLYNVYHEDLKGLKM 115
Query: 126 VALRATFIFDPQNIIQHITVNNLNVGR-NPIETLRILDAIQTGKL 169
VA RA FI P + + V + + + E +R + I G+L
Sbjct: 116 VAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA-GEL 159
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Score = 45.7 bits (107), Expect = 4e-07
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 18 PGFNLPE-ENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN- 75
P L + +V S GK I + P FT C + +
Sbjct: 11 PDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG 70
Query: 76 -AILLGGSSDNEFVKLAWRRENSNLYKLNHWQ-----FSDTNGSLIDQLGIRHETGVALR 129
+L S ++ FV AW + + ++ G +D + R
Sbjct: 71 VTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLG-TRSRR 129
Query: 130 ATFIFDPQNIIQHITVNN 147
+ D ++ +
Sbjct: 130 FALLVD-DLKVKAANIEG 146
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Score = 45.3 bits (106), Expect = 5e-07
Identities = 21/153 (13%), Positives = 37/153 (24%), Gaps = 6/153 (3%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEI---SEYNKLVKDFNER 74
P V T F K I + P FT C + V
Sbjct: 8 PQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGV 67
Query: 75 NAILLGGSSDNEFVKLAWRRENSNLYKLN-HWQFSDTNGSLIDQLGIRHETGVALRATFI 133
+ IL+ +D + E S T G + G +
Sbjct: 68 DDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSM 127
Query: 134 FDPQNIIQHITVNNLNVGRNPIETL--RILDAI 164
+++ + + G + +L +
Sbjct: 128 LVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYL 160
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 39.9 bits (92), Expect = 3e-05
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 32 KVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91
+V E K + +F+ K ++ N + + + +
Sbjct: 20 EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPG 79
Query: 92 WRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITV 145
+E + + + F D++ +L D + A ++FD ++H
Sbjct: 80 KIKETAAEHDITQPIFVDSDHALTDAFENE-----YVPAYYVFDKTGQLRHFQA 128
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 38.9 bits (89), Expect = 8e-05
Identities = 18/146 (12%), Positives = 38/146 (26%), Gaps = 9/146 (6%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
P + + K S F GK + + + K +
Sbjct: 37 PDLAFEDADG----KPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEV 92
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQ 137
+ + K + +NL F+D + L + + + + DPQ
Sbjct: 93 VAINIDTRDPEKPKTFLKEANLT--RLGYFNDQKAKVFQDLKAIG-RALGMPTSVLVDPQ 149
Query: 138 NIIQHITVNNLNVGRNPIETLRILDA 163
+ L+++ A
Sbjct: 150 GCEIATIAGPAE--WASEDALKLIRA 173
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 35.3 bits (80), Expect = 0.001
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 15/126 (11%)
Query: 18 PGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAI 77
F + +S GK + +F+ T CP +E L + A+
Sbjct: 5 LQFTATTLSG----APFDGASLQGKPAVLWFW----TPWCPFCNAEAPSLSQVAAANPAV 56
Query: 78 LLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQ 137
+ + + Y LN +D +G + + + A +
Sbjct: 57 --TFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVP-----WQPAFVFYRAD 109
Query: 138 NIIQHI 143
+
Sbjct: 110 GTSTFV 115
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 100.0 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 100.0 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 100.0 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 100.0 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 100.0 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 100.0 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 100.0 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 100.0 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 100.0 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 100.0 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 100.0 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 100.0 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 100.0 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 100.0 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.97 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.97 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.97 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.97 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.97 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.96 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.96 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.95 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.94 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.93 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.92 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.92 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.92 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.91 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.9 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 99.89 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.89 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.87 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 99.87 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.86 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.81 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.8 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 99.8 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.76 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.21 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.19 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.18 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.18 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.16 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.14 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.14 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.13 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.11 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.09 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.08 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.07 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.05 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.04 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.04 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.03 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 98.97 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 98.93 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 98.9 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.86 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 98.82 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 98.8 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 98.8 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 98.77 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.76 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.69 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.58 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.49 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 98.31 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.16 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 97.85 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.54 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 97.24 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.16 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.59 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 96.41 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 96.4 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 95.77 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 95.31 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 94.86 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 94.55 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 93.55 | |
| d1pn0a2 | 201 | Phenol hydroxylase, C-terminal domain {Soil-living | 93.54 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 93.19 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 91.84 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 90.0 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 89.65 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 80.85 |
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=3.4e-43 Score=261.67 Aligned_cols=170 Identities=35% Similarity=0.654 Sum_probs=155.7
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
..|.+||+|+++++.+ |.+| ++++|++++||++||+||++.|||+|+.|+..|++++++|++.|++|++||
T Consensus 4 e~~~PAPdFtl~a~l~-----d~~g----~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS 74 (194)
T d1uula_ 4 EDLHPAPDFNETALMP-----NGTF----KKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACS 74 (194)
T ss_dssp CTTSBCCCCEEEEECT-----TSCE----EEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEE
T ss_pred ccCCCCCCCccccccc-----CCCC----cEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEe
Confidence 4689999999775332 6888 999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 83 SDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 83 ~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
.|+.+.+++|.+++.. ..+++||+++|+++++++.||++ ...|++.|++||||++|+|+++++++....+++++++
T Consensus 75 ~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~L 154 (194)
T d1uula_ 75 MDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEAL 154 (194)
T ss_dssp SSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHH
T ss_pred cCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHH
Confidence 9999999999886532 34689999999999999999998 6678889999999999999999988889999999999
Q ss_pred HHHHhhc----cCCccccCCCCCCCCC
Q psy2878 159 RILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 159 ~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++|+++| ++..||+||++|+.||
T Consensus 155 r~l~alQ~~~~~~~~cp~~W~~g~~~~ 181 (194)
T d1uula_ 155 RLVKAFQFVEKHGEVCPANWKPGDKTM 181 (194)
T ss_dssp HHHHHHHHHHHHSCBBCTTCCTTSCCB
T ss_pred HHHHHhhhHhhcCCCcCCCCCCCCccc
Confidence 9999999 5899999999999986
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.9e-43 Score=259.51 Aligned_cols=168 Identities=31% Similarity=0.586 Sum_probs=154.3
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|+++|+|+++++ .+| .+.+++|++++||++||+||++.|||.|..|++.|++.+++|++.|+++++||.
T Consensus 3 Ig~~aP~F~~~a~--------~~g--~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~ 72 (186)
T d1n8ja_ 3 INTKIKPFKNQAF--------KNG--EFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVST 72 (186)
T ss_dssp TTCBCCCCEEEEE--------ETT--EEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEES
T ss_pred CCCcCCCCEeeee--------eCC--eeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccc
Confidence 7999999999843 233 226799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 84 DNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
|+.+.+++|++++.....++||+++|+++++++.||++ ...|++.|++||||++|+|+++++++....++++++|++|+
T Consensus 73 Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lk 152 (186)
T d1n8ja_ 73 DTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 152 (186)
T ss_dssp SCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred cCHHHHHHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHH
Confidence 99999999999885566799999999999999999998 66788899999999999999999888888999999999999
Q ss_pred hhc-----cCCccccCCCCCCCCC
Q psy2878 163 AIQ-----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 163 ~l~-----~~~~~~~~~~~~~~~~ 181 (181)
++| .++.||+||+||+++|
T Consensus 153 aLQ~~~~~~g~~~p~~W~~g~~~~ 176 (186)
T d1n8ja_ 153 AAQYVAAHPGEVCPAKWKEGEATL 176 (186)
T ss_dssp HHHHHHHSTTCBBCTTCCTTSCCB
T ss_pred HHHHHHhcCCeEeCCCCCCCCcee
Confidence 999 3799999999999885
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-43 Score=260.44 Aligned_cols=171 Identities=34% Similarity=0.625 Sum_probs=156.7
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++++|++||+|+++++. |.+| ++++|+|++||++||+||++.|||+|+.|+..|++++++|++.|++|++
T Consensus 4 ~~~VG~~AP~F~l~~~~------d~~~----~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vig 73 (197)
T d1qmva_ 4 NARIGKPAPDFKATAVV------DGAF----KEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLG 73 (197)
T ss_dssp TBCTTSBCCCCEEEEEE------TTEE----EEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CCcCCCcCCCCCCccee------CCCC----cEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEE
Confidence 47899999999997432 5677 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
||.|+...+++|+++... ..+++||+++|+++++++.||++ ...|++.|++||||++|+|++.+.+.....+++++
T Consensus 74 IS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E 153 (197)
T d1qmva_ 74 VSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDE 153 (197)
T ss_dssp EESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHH
T ss_pred EecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHH
Confidence 999999999999886432 34789999999999999999999 66788899999999999999999888899999999
Q ss_pred HHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 157 TLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 157 ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
+++.|+++| ++..||+||+||+++|
T Consensus 154 ~lr~l~alq~~~~~g~~cp~~W~pG~~~~ 182 (197)
T d1qmva_ 154 ALRLVQAFQYTDEHGEVCPAGWKPGSDTI 182 (197)
T ss_dssp HHHHHHHHHHHHHHCCBBCTTCCTTSCCB
T ss_pred HHHHHHhhccccccCcCcCCCCCCCCccc
Confidence 999999998 5789999999999875
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-41 Score=253.71 Aligned_cols=166 Identities=27% Similarity=0.388 Sum_probs=150.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|.+|++||+|+++ +.+| + ++|++++| |++||+||++.|||+|+.|+..|++.+++|+++|+++++
T Consensus 1 L~VGd~APdF~l~---------~~~G----~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~g 66 (220)
T d1prxa_ 1 LLLGDVAPNFEAN---------TTVG----R-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIA 66 (220)
T ss_dssp CCTTCBCCCCEEE---------ETTE----E-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred CCCCCCCCCcEee---------cCCC----C-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeec
Confidence 5799999999999 7888 6 99999987 799999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHc------CCCcccceeEEEcCCchHHHHhCCC-CCC------CcceeeEEEEcCCCcEEEEEecc
Q psy2878 81 GSSDNEFVKLAWRREN------SNLYKLNHWQFSDTNGSLIDQLGIR-HET------GVALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~gv~-~~~------g~~~p~~~liD~~g~i~~~~~~~ 147 (181)
||.|+.+.+.+|.+.. ....+++||+++|++.++++.||+. ... +.+.|++||||++|+|++..+++
T Consensus 67 iS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~ 146 (220)
T d1prxa_ 67 LSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYP 146 (220)
T ss_dssp EESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECC
T ss_pred cccccccchhhhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEec
Confidence 9999999999998753 2234689999999999999999998 322 24689999999999999999998
Q ss_pred CCCCCCHHHHHHHHHhhcc----CCccccCCCCCCCCC
Q psy2878 148 LNVGRNPIETLRILDAIQT----GKLCACNRTLNGKTL 181 (181)
Q Consensus 148 ~~~~~~~~~ll~~l~~l~~----~~~~~~~~~~~~~~~ 181 (181)
...++++++++++|+++|. +..||+||.||+++|
T Consensus 147 ~~~gR~~dEiLr~l~alq~~~~~~~~~PanW~pGd~~~ 184 (220)
T d1prxa_ 147 ATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVM 184 (220)
T ss_dssp TTBCCCHHHHHHHHHHHHHHHHHCEEBCTTCCTTSCEE
T ss_pred CCcccchHHHHHHHHHHhhhhcCCcCcCCCCCCCCcee
Confidence 9999999999999999984 789999999999875
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=2.7e-40 Score=249.32 Aligned_cols=168 Identities=25% Similarity=0.375 Sum_probs=148.5
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
+.+|+++|+|++++ .+| ...++|+++ +||++||+||++.|||+|+.|+..|++.+++|+++|++++|
T Consensus 2 i~iGd~aPdF~l~~---------~~~---~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vig 69 (219)
T d1xcca_ 2 YHLGATFPNFTAKA---------SGI---DGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIG 69 (219)
T ss_dssp CCTTCBCCCCEECB---------TTC---SSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEE
T ss_pred CcCCCCCCCcEeec---------cCC---CCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEe
Confidence 57999999999983 332 036899996 78999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcC---CCcccceeEEEcCCchHHHHhCCC-CC----C--CcceeeEEEEcCCCcEEEEEeccCCC
Q psy2878 81 GSSDNEFVKLAWRRENS---NLYKLNHWQFSDTNGSLIDQLGIR-HE----T--GVALRATFIFDPQNIIQHITVNNLNV 150 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~gv~-~~----~--g~~~p~~~liD~~g~i~~~~~~~~~~ 150 (181)
||.|+.+++.+|+++.. ...+++||+++|++.++++.|||. .. . +.+.|++||||++|+|++.+.++..+
T Consensus 70 iS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~ 149 (219)
T d1xcca_ 70 FSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATT 149 (219)
T ss_dssp EESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTB
T ss_pred ecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCc
Confidence 99999999999998642 234789999999999999999998 22 1 24568999999999999999888999
Q ss_pred CCCHHHHHHHHHhhc----cCCccccCCCCCCCCC
Q psy2878 151 GRNPIETLRILDAIQ----TGKLCACNRTLNGKTL 181 (181)
Q Consensus 151 ~~~~~~ll~~l~~l~----~~~~~~~~~~~~~~~~ 181 (181)
++++++++++|+++| +++.||+||++|++++
T Consensus 150 gr~~~EiLr~l~aLQ~~~~~~~~~PanW~~G~~~~ 184 (219)
T d1xcca_ 150 GRNAHEILRVLKSLQLTYTTPVATPVNWNEGDKCC 184 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHSSEEBCTTCCTTSCEE
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCcCCCCCCCCcee
Confidence 999999999999999 6789999999999864
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.7e-38 Score=229.95 Aligned_cols=162 Identities=41% Similarity=0.744 Sum_probs=144.0
Q ss_pred CCccCccCCCcEEecccCC------CCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc
Q psy2878 1 MKTIGQSLSSYRVIGVKPG------FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER 74 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~------~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~ 74 (181)
||++|+++|+|++++..|. +...+..| +.++|++++||++||+||+++|||.|+.+++.|++++++|+++
T Consensus 2 ~l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~----~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~ 77 (169)
T d2bmxa1 2 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYF----TTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR 77 (169)
T ss_dssp BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGE----EEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT
T ss_pred CCCCCCCCCCCEEeeccCCcccccccccccccc----cEeeHHHHCCCeEEEEEecCCCCcccccccccccccccccccc
Confidence 7999999999999965542 11122344 7899999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 75 NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 75 ~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
|+++++||.|+.+.+.+|.+++.....++|++++|++.++++.||++...+.+.|++||||++|+|++.+.++....+++
T Consensus 78 g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~ 157 (169)
T d2bmxa1 78 DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNV 157 (169)
T ss_dssp TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCH
T ss_pred CcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCH
Confidence 99999999999999999999886666799999999999999999998555677899999999999999998777778899
Q ss_pred HHHHHHHHhhcc
Q psy2878 155 IETLRILDAIQT 166 (181)
Q Consensus 155 ~~ll~~l~~l~~ 166 (181)
+++++.|+++|+
T Consensus 158 ~evl~~l~alq~ 169 (169)
T d2bmxa1 158 DEVLRVLDALQS 169 (169)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=5.5e-39 Score=244.72 Aligned_cols=166 Identities=24% Similarity=0.428 Sum_probs=145.7
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC---CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF---PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~---~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
+.+|++||+|+++ +.+| . ++++++ +||++||+||++.|||+|+.|++.|++++++|+++|+++
T Consensus 1 PlIGd~aPdF~l~---------t~~G----~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~v 66 (237)
T d2zcta1 1 PLIGERFPEMEVT---------TDHG----V-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDL 66 (237)
T ss_dssp CCTTSBCCCEEEE---------ETTE----E-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEE
T ss_pred CCCCCCCCCeEEE---------cCCC----C-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcce
Confidence 3589999999999 7787 4 667664 799999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHcC--CCcccceeEEEcCCchHHHHhCCC-CCC-CcceeeEEEEcCCCcEEEEEeccCCCCCCH
Q psy2878 79 LGGSSDNEFVKLAWRRENS--NLYKLNHWQFSDTNGSLIDQLGIR-HET-GVALRATFIFDPQNIIQHITVNNLNVGRNP 154 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~gv~-~~~-g~~~p~~~liD~~g~i~~~~~~~~~~~~~~ 154 (181)
||||.|+.+++++|++... ...+++||+++|++.++++.|||. ... +.+.|++||||++|+|++++.++.+.++++
T Consensus 67 igiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~ 146 (237)
T d2zcta1 67 IGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLV 146 (237)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCH
T ss_pred eeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCH
Confidence 9999999999999987431 124789999999999999999997 332 356899999999999999998888889999
Q ss_pred HHHHHHHHhhc----cCCccccCCCC----CCCCC
Q psy2878 155 IETLRILDAIQ----TGKLCACNRTL----NGKTL 181 (181)
Q Consensus 155 ~~ll~~l~~l~----~~~~~~~~~~~----~~~~~ 181 (181)
+++|++|+++| ++..||+||++ |++||
T Consensus 147 dEiLr~l~aLQ~~~~~~~~~Pa~W~~~~~~g~~~~ 181 (237)
T d2zcta1 147 DEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLI 181 (237)
T ss_dssp HHHHHHHHHHHHHHHHTCBBCTTTTSBTTTBTCEE
T ss_pred HHHHHHHHHHhhhccCCcCCcCCCCCCCCCCCCEE
Confidence 99999999999 46899999998 77764
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=100.00 E-value=1.9e-38 Score=231.64 Aligned_cols=162 Identities=38% Similarity=0.656 Sum_probs=145.5
Q ss_pred cCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 7 SLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 7 ~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.||+|+++++.+ |.+| ++++|+|++| |++||+||++.|||.|+.|+..|++.+++|.+.|+++|+||.|+
T Consensus 1 kAPdF~l~~~~g-----d~~~----~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~ 71 (170)
T d2h01a1 1 QAPSFKAEAVFG-----DNTF----GEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDS 71 (170)
T ss_dssp BCCCCEEEEECT-----TSCE----EEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred CCCCeEeeeecC-----CCCc----cEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCc
Confidence 589999997766 4677 8999999998 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC---CCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 86 EFVKLAWRRENS---NLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 86 ~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
...+++|.++.. ...+++|++++|+++++++.||+....+.+.|++||||++|+|++.+++..+..++.++++++|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~ 151 (170)
T d2h01a1 72 KFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLID 151 (170)
T ss_dssp HHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHH
T ss_pred HHHHHhHhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHH
Confidence 999999987542 23468999999999999999999844467789999999999999999877778889999999999
Q ss_pred hhcc----CCccccCCCCC
Q psy2878 163 AIQT----GKLCACNRTLN 177 (181)
Q Consensus 163 ~l~~----~~~~~~~~~~~ 177 (181)
++|. +++||+||+||
T Consensus 152 ~lq~~~~~~~~~~~~w~~g 170 (170)
T d2h01a1 152 ALQHHEKYGDVCPANWQKG 170 (170)
T ss_dssp HHHHHHHHCCCCCSSCCCC
T ss_pred HhhhhhhcCCccCCCCCCC
Confidence 9883 67999999998
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=100.00 E-value=4.3e-38 Score=228.94 Aligned_cols=153 Identities=31% Similarity=0.579 Sum_probs=139.6
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|+++|+|++++..+ +.++ .+++|++++||++||+||++.|||+|+.+++.|++++++|.++|+++++||.
T Consensus 3 vG~~aP~F~l~~~~~-----g~~~----~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~ 73 (166)
T d1we0a1 3 IGTEVQPFRAQAFQS-----GKDF----FEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVST 73 (166)
T ss_dssp TTCBCCCCEEEEECS-----SSCC----EEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEES
T ss_pred CCCcCCCCEEeeecC-----Ccce----eEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEeccc
Confidence 799999999996544 2456 8999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHH
Q psy2878 84 DNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILD 162 (181)
Q Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~ 162 (181)
|+.+.+++|.+++....+++||+++|++++++++||+. ...+++.|++||||++|+|+++++++.+..++++++++.|+
T Consensus 74 D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lk 153 (166)
T d1we0a1 74 DTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVK 153 (166)
T ss_dssp SCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHH
T ss_pred ccHHHHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHH
Confidence 99999999998764445799999999999999999998 66678899999999999999999877777889999999999
Q ss_pred hhc
Q psy2878 163 AIQ 165 (181)
Q Consensus 163 ~l~ 165 (181)
+++
T Consensus 154 al~ 156 (166)
T d1we0a1 154 AAQ 156 (166)
T ss_dssp HHH
T ss_pred hcc
Confidence 988
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=2.2e-37 Score=226.05 Aligned_cols=162 Identities=33% Similarity=0.576 Sum_probs=143.5
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCC-eEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGK-WKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk-~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|.+|++||+|+++++.|. +..| +.++|++++|| ++||+||++.|||.|+.|++.|++.+++|.+.|++|++
T Consensus 1 ~lVG~~APdF~l~~~~g~----~~~~----~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvg 72 (170)
T d1zofa1 1 MVVTKLAPDFKAPAVLGN----NEVD----EHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIG 72 (170)
T ss_dssp CCTTSBCCCCEEEEECTT----SCEE----EEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEE
T ss_pred CCCCCcCCCcCcccccCC----Cccc----eEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEec
Confidence 348999999999976665 5555 78999999996 89999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 81 GSSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
||.|+.+.+++|++++.. ..+++|++++|++.++++.||++...+++.|++||||++|+|++.++++.+..++++++
T Consensus 73 is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~ei 152 (170)
T d1zofa1 73 VSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEM 152 (170)
T ss_dssp EESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHH
T ss_pred ccccchhhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHH
Confidence 999999999999886522 33789999999999999999998445778899999999999999998777778899999
Q ss_pred HHHHHhhc----cCCccc
Q psy2878 158 LRILDAIQ----TGKLCA 171 (181)
Q Consensus 158 l~~l~~l~----~~~~~~ 171 (181)
+++|++|| +++.||
T Consensus 153 L~~l~aLq~~~~~~~~~p 170 (170)
T d1zofa1 153 LRMVDALLHFEEHGEVCP 170 (170)
T ss_dssp HHHHHHHHHHHSSCCCCC
T ss_pred HHHHHHhhhHHhcCCcCc
Confidence 99999996 567887
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=100.00 E-value=3.7e-36 Score=218.81 Aligned_cols=156 Identities=31% Similarity=0.622 Sum_probs=139.6
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|++||+|++.++. .|.+| ++++|+|++||++||+||+++|||+|+.+++.|++++++|.++|+++++|
T Consensus 3 ~kvG~~APdF~~~~~l-----~d~~g----~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~i 73 (167)
T d1e2ya_ 3 AKLNHPAPEFDDMALM-----PNGTF----KKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISC 73 (167)
T ss_dssp CCTTSBCCCCEEEEEC-----SSSCE----EEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred ccCCCCCCCCcccccc-----cCCCC----cEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEee
Confidence 5799999999965321 17899 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHcCC---CcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 82 SSDNEFVKLAWRRENSN---LYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 82 s~d~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
|.|+.+.+.+|..+... ....+|++++|++..+++.|++. ...|++.|++||||++|+|+++++++....++.+++
T Consensus 74 s~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~ev 153 (167)
T d1e2ya_ 74 SCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEV 153 (167)
T ss_dssp ESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred cCCcHHhHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHH
Confidence 99999999999875422 23578999999999999999998 666788999999999999999988777778899999
Q ss_pred HHHHHhhcc
Q psy2878 158 LRILDAIQT 166 (181)
Q Consensus 158 l~~l~~l~~ 166 (181)
+++|+++|.
T Consensus 154 L~~l~alq~ 162 (167)
T d1e2ya_ 154 IRLVEALQF 162 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 999999984
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-35 Score=213.36 Aligned_cols=151 Identities=36% Similarity=0.630 Sum_probs=136.9
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
+.||+|+++++. |.+| ++++|+|++||++||+||++.|||+|+.+++.|++++++|.+.|+++++||.|+
T Consensus 1 ~~AP~F~l~~~~------~~~~----~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~ 70 (158)
T d1zyea1 1 QHAPYFKGTAVV------SGEF----KEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDS 70 (158)
T ss_dssp SBCCCCEEEEEC------SSSE----EEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred CCCCCCccceee------CCCc----cEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcC
Confidence 479999998443 4567 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC---CCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 86 EFVKLAWRRENS---NLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 86 ~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
.+.+++|++... ...+++|++++|++.++++.||+. ...|++.|++||||++|+|+++++++.+..+++++++++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~l 150 (158)
T d1zyea1 71 HFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLV 150 (158)
T ss_dssp HHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 999999998642 234789999999999999999998 6677889999999999999999987788889999999999
Q ss_pred Hhhcc
Q psy2878 162 DAIQT 166 (181)
Q Consensus 162 ~~l~~ 166 (181)
+++|.
T Consensus 151 kalq~ 155 (158)
T d1zyea1 151 KAFQF 155 (158)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 99984
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.1e-35 Score=213.32 Aligned_cols=148 Identities=21% Similarity=0.388 Sum_probs=136.0
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCC-CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPG-KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~g-k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
||++|+++|+|+++ |.+| ++++|++++| +++||+||+++|||.|+.+++.|++++++++..|++++
T Consensus 1 ml~vG~~aPdF~l~---------d~~G----~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi 67 (153)
T d1xvwa1 1 MLNVGATAPDFTLR---------DQNQ----QLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAAL 67 (153)
T ss_dssp CCCTTSBCCCCEEE---------CTTS----CEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEE
T ss_pred CCCCcCCCcCeEEE---------CCCC----CEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccc
Confidence 89999999999999 9999 9999999999 58999999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcC--CchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDT--NGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIE 156 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ 156 (181)
+||.|+++.+++|++++ +++|++++|. ++.+++.||++ ...|++.|++||||++|+|+|.++......++.++
T Consensus 68 ~vs~d~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~ 143 (153)
T d1xvwa1 68 AISVGPPPTHKIWATQS----GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRL 143 (153)
T ss_dssp EEESCCHHHHHHHHHHH----TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHH
T ss_pred cccchhhhHHHHHhhhh----ccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHH
Confidence 99999999999999998 9999999885 68899999998 66788889999999999999999755556677888
Q ss_pred HHHHHHhhc
Q psy2878 157 TLRILDAIQ 165 (181)
Q Consensus 157 ll~~l~~l~ 165 (181)
+.++|++|+
T Consensus 144 ~~~~L~aL~ 152 (153)
T d1xvwa1 144 WTDALAALT 152 (153)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 989988875
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=3e-35 Score=212.15 Aligned_cols=149 Identities=21% Similarity=0.345 Sum_probs=134.2
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC--CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF--PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAIL 78 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~--~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~v 78 (181)
|+++|++||+|+++ |.+| +.++|+++ +||++||+||+++|||+|+.+++.++++++++++.++.+
T Consensus 1 mi~vG~~aPdF~L~---------~~~G----~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~v 67 (160)
T d2cx4a1 1 LVELGEKAPDFTLP---------NQDF----EPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEV 67 (160)
T ss_dssp CCCTTSBCCCCEEC---------CTTS----CCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEE
T ss_pred CCcCCCCCcCeEeE---------CCCC----CEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccccccc
Confidence 89999999999999 8999 99999998 799999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC-C---CcceeeEEEEcCCCcEEEEEeccCCC-CC
Q psy2878 79 LGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE-T---GVALRATFIFDPQNIIQHITVNNLNV-GR 152 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~-~---g~~~p~~~liD~~g~i~~~~~~~~~~-~~ 152 (181)
++||.|+++.+++|.+++ +++|++++|++.++++.||++ .. . ..+.|++||||++|+|++++.+.... ..
T Consensus 68 v~is~d~~~~~~~~~~~~----~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~ 143 (160)
T d2cx4a1 68 LAISVDSPWCLKKFKDEN----RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEP 143 (160)
T ss_dssp EEEESSCHHHHHHHHHHH----TCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCC
T ss_pred ccccccchhhhhhhcccc----eeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCC
Confidence 999999999999999987 999999999999999999997 21 1 24578999999999999999754433 45
Q ss_pred CHHHHHHHHHhhcc
Q psy2878 153 NPIETLRILDAIQT 166 (181)
Q Consensus 153 ~~~~ll~~l~~l~~ 166 (181)
++++++++++++..
T Consensus 144 ~~~eil~~l~~l~~ 157 (160)
T d2cx4a1 144 DYDEVVREANKIAG 157 (160)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcc
Confidence 79999999988753
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.7e-34 Score=210.37 Aligned_cols=154 Identities=12% Similarity=0.109 Sum_probs=130.1
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
+++|+++|+|+++ |.+| +.++|++++||++||+|| ++|||+|+.+++.|.+++++|++ ++.+++|
T Consensus 6 l~vG~~aPdF~l~---------d~~G----~~~~Lsd~kGk~vvl~Fw-atwCp~C~~~~p~l~~l~~~y~~-~v~~v~i 70 (187)
T d2cvba1 6 LPLESPLIDAELP---------DPRG----GRYRLSQFHEPLLAVVFM-CNHCPYVKGSIGELVALAERYRG-KVAFVGI 70 (187)
T ss_dssp CCTTCBCCCCEEE---------CTTS----CEEEGGGCCSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTTT-TEEEEEE
T ss_pred CCCCCccCccEee---------cCCC----CEEEHHHhCCCeEEEEEe-CCCCccchhhhhhhhhhhhhccc-cceeeee
Confidence 6789999999999 9999 999999999999999988 88999999999999999999986 5899999
Q ss_pred ecC--------CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC---
Q psy2878 82 SSD--------NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV--- 150 (181)
Q Consensus 82 s~d--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~--- 150 (181)
+.+ +.+..++|.+++ +++|+++.|+++.+++.|++. .+|++||||++|+|+|+...+...
T Consensus 71 ~snd~~~~~~~~~e~~~~~~~~~----~~~~p~l~D~~~~~~~~~~v~-----~~P~~~liD~~G~i~y~G~idd~~~~~ 141 (187)
T d2cvba1 71 NANDYEKYPEDAPEKMAAFAEEH----GIFFPYLLDETQEVAKAYRAL-----RTPEVFLFDERRLLRYHGRVNDNPKDP 141 (187)
T ss_dssp ECCCTTTCGGGSHHHHHHHHHHH----TCCSCEEECSSSHHHHHTTCC-----EESEEEEECTTCBEEEEECSSSCTTCG
T ss_pred eccccccccccchHHHHHHHHHh----CCcceeeechhhhhccccccc-----ceeeEEEEcCCCeEEEEeeecCCCCCC
Confidence 742 457788888887 999999999999999999997 788999999999999987532222
Q ss_pred -CCCHHHHHHHHHhhccC----------CccccCCCCCCC
Q psy2878 151 -GRNPIETLRILDAIQTG----------KLCACNRTLNGK 179 (181)
Q Consensus 151 -~~~~~~ll~~l~~l~~~----------~~~~~~~~~~~~ 179 (181)
.....++.++|+++..+ .+|.++|++|..
T Consensus 142 ~~~~~~~L~~Ai~~ll~g~~~~~~~t~~~GC~ik~~~~~~ 181 (187)
T d2cvba1 142 SKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGNE 181 (187)
T ss_dssp GGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHcCCCCCccccCCCCcceeECCCCC
Confidence 12234577777766533 489999999953
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=7.3e-32 Score=195.46 Aligned_cols=139 Identities=19% Similarity=0.343 Sum_probs=119.4
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++++|++||+|+|+ |.+| ++++|++++||++||+||++.|||.|..+++.|++++.+++ ++++++
T Consensus 17 ~~~vG~~APdF~L~---------~~~g----~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~ 81 (164)
T d1qxha_ 17 IPQAGSKAQTFTLV---------AKDL----SDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLC 81 (164)
T ss_dssp CCCTTSBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEE
T ss_pred cCCCCCCCCCeEEE---------CCCC----CEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeee
Confidence 47899999999999 9999 99999999999999999999999999999999999987764 799999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEE--cCCchHHHHhCCC-C---CCCcceeeEEEEcCCCcEEEEEecc-CCCCCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFS--DTNGSLIDQLGIR-H---ETGVALRATFIFDPQNIIQHITVNN-LNVGRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~gv~-~---~~g~~~p~~~liD~~g~i~~~~~~~-~~~~~~ 153 (181)
||.|+++.+++|.+++ +++++++. |++.++++.||+. . ..|++.|++||||++|+|+|++... ....++
T Consensus 82 Is~d~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~pd 157 (164)
T d1qxha_ 82 ISADLPFAQSRFCGAE----GLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPD 157 (164)
T ss_dssp EESSCHHHHTTCCSST----TCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC
T ss_pred EEcCCHHHHHHHHHHh----CCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcCCCCCCCC
Confidence 9999999998888776 77777765 5679999999986 2 2456789999999999999998633 334567
Q ss_pred HHHHH
Q psy2878 154 PIETL 158 (181)
Q Consensus 154 ~~~ll 158 (181)
.++++
T Consensus 158 ~d~~l 162 (164)
T d1qxha_ 158 YEAAL 162 (164)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 77665
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=5.2e-31 Score=191.28 Aligned_cols=144 Identities=17% Similarity=0.254 Sum_probs=118.5
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+++|+++|+|+++ |.+| ++++|++++||++||+||++.|||.|..+++.|++ ++++.|+++++
T Consensus 16 ~p~iG~~aP~F~L~---------~~~g----~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~---~~~~~g~~vv~ 79 (166)
T d1xvqa_ 16 LPAVGSPAPAFTLT---------GGDL----GVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLC 79 (166)
T ss_dssp CCCTTSBCCCCEEE---------CTTS----CEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHH---HHHHTTCEEEE
T ss_pred CCCCcCCCCCeEEE---------CCCC----CEEehHHhCCcEEEEEeeecccccccHHHHHHHhh---hcccccccccc
Confidence 47899999999999 9999 99999999999999999999999999999887754 56677999999
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEE-cCCchHHHHhCCC-C---CCCcceeeEEEEcCCCcEEEEEec-cCCCCCCH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFS-DTNGSLIDQLGIR-H---ETGVALRATFIFDPQNIIQHITVN-NLNVGRNP 154 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~gv~-~---~~g~~~p~~~liD~~g~i~~~~~~-~~~~~~~~ 154 (181)
||.|+...+++|.+++ +..+..+. |....+++.||+. . ..|++.|++||||++|+|+|.+.. +.....+.
T Consensus 80 Is~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~ 155 (166)
T d1xvqa_ 80 VSKDLPFAQKRFCGAE----GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNY 155 (166)
T ss_dssp EESSCHHHHTTCC----------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCH
T ss_pred cccchHHHHHHHHHHh----CCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCH
Confidence 9999999998888876 77776654 6678999999997 2 234667899999999999998863 34456689
Q ss_pred HHHHHHHHhh
Q psy2878 155 IETLRILDAI 164 (181)
Q Consensus 155 ~~ll~~l~~l 164 (181)
++++++|++.
T Consensus 156 d~il~aL~a~ 165 (166)
T d1xvqa_ 156 EAALAALGAT 165 (166)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999999864
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.97 E-value=3.5e-31 Score=191.68 Aligned_cols=145 Identities=21% Similarity=0.310 Sum_probs=124.9
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
++++|++||+|+++ |.+| ++++|++++||++||.||++.|||.|..+++.|.+.+++++ ++.+++
T Consensus 15 ~l~vG~~aPdF~L~---------~~~g----~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~ 79 (163)
T d1psqa_ 15 QLQVGDKALDFSLT---------TTDL----SKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLT 79 (163)
T ss_dssp CCCTTSBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEE
T ss_pred CCCCCCCCCCeEEE---------CCCC----CEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEE
Confidence 47899999999999 9999 99999999999999999999999999999999999888885 799999
Q ss_pred EecCCHHHHHHHHHHcCCCcccce-eEEEc-CCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEecc-CCCCCCHHH
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNH-WQFSD-TNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNN-LNVGRNPIE 156 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~-~~~~D-~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~-~~~~~~~~~ 156 (181)
||.|++..+++|..+. +..+ .++.| .+..+++.||+. ...+.+.|++||||++|+|+|.+... .....+.++
T Consensus 80 Is~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~ 155 (163)
T d1psqa_ 80 VSMDLPFAQKRWCGAE----GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEA 155 (163)
T ss_dssp EESSCHHHHHHHHHHH----TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHH
T ss_pred EEeccHHHHHHHHHHc----CCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHH
Confidence 9999999999999987 5444 34444 578999999998 55566778999999999999998633 334567899
Q ss_pred HHHHHHhh
Q psy2878 157 TLRILDAI 164 (181)
Q Consensus 157 ll~~l~~l 164 (181)
++++|++|
T Consensus 156 il~alk~L 163 (163)
T d1psqa_ 156 AIAAAKAL 163 (163)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99999875
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-31 Score=192.35 Aligned_cols=145 Identities=19% Similarity=0.305 Sum_probs=121.9
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC--CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF--PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL 79 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~--~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi 79 (181)
|++|++||+|+++ |.+| +.++|+++ +|+++|++||+++|||.|..+++.|++.+++|++ ++.++
T Consensus 5 L~vG~~aP~f~L~---------~~~g----~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~ 70 (156)
T d2a4va1 5 LEIGDPIPDLSLL---------NEDN----DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVF 70 (156)
T ss_dssp CCTTCBCCSCEEE---------CTTS----CEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEE
T ss_pred CCCCCCCCCeEEE---------CCCC----CEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-cccee
Confidence 7899999999999 9999 99999999 4567888888899999999999999999999975 67799
Q ss_pred EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCC---CCCCHH
Q psy2878 80 GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLN---VGRNPI 155 (181)
Q Consensus 80 ~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~---~~~~~~ 155 (181)
+||.|+.+.+++|++++ +++|++++|+++++++.||+. ...+...+++| |+.||+|++++....+ +..+++
T Consensus 71 ~is~d~~~~~~~f~~~~----~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~-i~~dg~i~~~~~~~~~~~~~~~~~~ 145 (156)
T d2a4va1 71 GLSADSVTSQKKFQSKQ----NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHF-IFVDGKLKFKRVKISPEVSVNDAKK 145 (156)
T ss_dssp EEESCCHHHHHHHHHHH----TCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEE-EEETTEEEEEEESCCHHHHHHHHHH
T ss_pred eeccchhhhHHhhhccc----CccceeccchHHHHHHHcCCCccccCCeeEEEE-EEECCeEEEEEEEeCCCCCcchHHH
Confidence 99999999999999998 999999999999999999998 22222234444 4479999999863221 234567
Q ss_pred HHHHHHHhhc
Q psy2878 156 ETLRILDAIQ 165 (181)
Q Consensus 156 ~ll~~l~~l~ 165 (181)
+++++|++++
T Consensus 146 evl~~lk~l~ 155 (156)
T d2a4va1 146 EVLEVAEKFK 155 (156)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 8999998876
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.97 E-value=6.5e-31 Score=190.41 Aligned_cols=142 Identities=23% Similarity=0.364 Sum_probs=121.3
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLG 80 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~ 80 (181)
|+++|++||+|+++ |.+| ++++|++++||++||+||++.|||.|..|++.|++.+++|+ ++.+++
T Consensus 15 ~p~vG~~APdF~L~---------d~~g----~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~ 79 (164)
T d1q98a_ 15 FPQVGEIVENFILV---------GNDL----ADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLC 79 (164)
T ss_dssp CCCTTCBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEE
T ss_pred CCCCCCCCCCcEEE---------CCCC----CEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEe
Confidence 68999999999999 8999 99999999999999999999999999999999999999995 799999
Q ss_pred EecCCHHHHHHHHHHcCCCcccc-eeEEEc-CCchHHHHhCCC-CC---CCcceeeEEEEcCCCcEEEEEeccC-CCCCC
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLN-HWQFSD-TNGSLIDQLGIR-HE---TGVALRATFIFDPQNIIQHITVNNL-NVGRN 153 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~-~~~~~D-~~~~~~~~~gv~-~~---~g~~~p~~~liD~~g~i~~~~~~~~-~~~~~ 153 (181)
||.|+++.+++|.+++ ++. +..++| .+..+++.||+. .. .|+..|++||||++|+|+|+..... ....+
T Consensus 80 iS~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~~~~~epd 155 (164)
T d1q98a_ 80 ISADLPFAQARFCGAE----GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPN 155 (164)
T ss_dssp EESSCHHHHTTCTTTT----TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC
T ss_pred ecCCcHHHHHHHHHHh----CCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECCCCCCCCC
Confidence 9999999999998876 665 445555 467899999987 22 4567799999999999999986332 33457
Q ss_pred HHHHHHHH
Q psy2878 154 PIETLRIL 161 (181)
Q Consensus 154 ~~~ll~~l 161 (181)
.++++++|
T Consensus 156 ~~~~l~~L 163 (164)
T d1q98a_ 156 YEAALAVL 163 (164)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 78887765
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.96 E-value=1.3e-29 Score=178.09 Aligned_cols=134 Identities=15% Similarity=0.284 Sum_probs=117.4
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS 83 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~ 83 (181)
+|+++|+|++. |.+| +++++++++||++||+|| ++|||+|..+++.++++++++.+.++.+++|+.
T Consensus 1 ~G~~~P~f~l~---------~~~G----~~~~l~~~~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~ 66 (137)
T d1st9a_ 1 EGSDAPNFVLE---------DTNG----KRIELSDLKGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNV 66 (137)
T ss_dssp CCEECCCCEEE---------CTTS----CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CcCcCCCeEEE---------CCCc----CEEeHHHhCCCEEEEEEe-eccccceeecccccccccccccccccccccccc
Confidence 59999999999 9999 999999999999999998 889999999999999999999999999999997
Q ss_pred C-CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 84 D-NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 84 d-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+ +.+.+++|++++ +++|+++.|.+.++++.||+. ..|++||||++|+|++++.+.. ....++++++.|
T Consensus 67 ~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~v~-----~~P~~~liD~~G~i~~~~~G~~-~~~~~~~~l~~l 135 (137)
T d1st9a_ 67 GESKIAVHNFMKSY----GVNFPVVLDTDRQVLDAYDVS-----PLPTTFLINPEGKVVKVVTGTM-TESMIHDYMNLI 135 (137)
T ss_dssp SCCHHHHHHHHHHT----TCCSCEEEETTSHHHHHTTCC-----SSCEEEEECTTSEEEEEEESCC-CHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHc----CCCccccccccchhhhhhhcc-----ccceEEEECCCCEEEEEEECCC-CHHHHHHHHHhh
Confidence 5 578899999987 899999999999999999987 5689999999999999986432 223344554444
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.96 E-value=3.5e-29 Score=175.38 Aligned_cols=133 Identities=11% Similarity=0.171 Sum_probs=118.0
Q ss_pred CccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 5 GQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 5 G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
|+..|+|++. +.+| +++++++++||++||+|| ++|||+|+.+++.|+++++++ .++.+++|+.+
T Consensus 1 ~d~~~~f~~~---------~~~G----~~~~l~~~~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~--~~v~~v~v~~~ 64 (134)
T d1lu4a_ 1 ADERLQFTAT---------TLSG----APFDGASLQGKPAVLWFW-TPWCPFCNAEAPSLSQVAAAN--PAVTFVGIATR 64 (134)
T ss_dssp CGGGGCCEEE---------BTTS----CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEECS
T ss_pred CCCCCcceeE---------CCCC----CEEcHHHhCCCEEEEEEe-ecccCCceecchhHHHHhhhh--ccccccccccc
Confidence 7889999999 8999 999999999999999999 889999999999999998865 47999999975
Q ss_pred -CHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 85 -NEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+.+..++|++++ +++|+++.|+++.+++.||+. ..|++||||++|+|++.+. .......+++.++|++
T Consensus 65 ~~~~~~~~~~~~~----~~~~p~~~d~~~~~~~~~~v~-----~~P~~~lid~~G~i~~v~~--~~g~~~~~~l~~~l~~ 133 (134)
T d1lu4a_ 65 ADVGAMQSFVSKY----NLNFTNLNDADGVIWARYNVP-----WQPAFVFYRADGTSTFVNN--PTAAMSQDELSGRVAA 133 (134)
T ss_dssp SCHHHHHHHHHHH----TCCSEEEECTTSHHHHHTTCC-----SSSEEEEECTTSCEEEECC--SSSCCCHHHHHHHHHH
T ss_pred cchhhhhhhhhhh----ccccceeeCchHHHHHHcCCC-----cCCEEEEEeCCCeEEEEec--cCCCCCHHHHHHHHHc
Confidence 577888999998 999999999999999999987 6789999999999998762 2334578899999887
Q ss_pred h
Q psy2878 164 I 164 (181)
Q Consensus 164 l 164 (181)
|
T Consensus 134 L 134 (134)
T d1lu4a_ 134 L 134 (134)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=2.2e-27 Score=167.77 Aligned_cols=137 Identities=12% Similarity=0.158 Sum_probs=115.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGG 81 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~I 81 (181)
|++|+++|+|++.+. ..+| +.++++.+.||+++|+|| ++|||+|..+++.|+++++++++ ++.+|+|
T Consensus 1 ~k~g~~aP~~~~~~~-------~~ng----~~~~~~~~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v 67 (143)
T d2b5xa1 1 MKLRQPMPELTGEKA-------WLNG----EVTREQLIGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-QLNVVAV 67 (143)
T ss_dssp CCTTCBCCCCCCCSE-------EESC----CCCHHHHTTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred CCCCCcCCCCcCCcc-------CcCC----eEecHHHhCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-cccceeE
Confidence 579999999997721 1588 889999999999999999 88999999999999999999986 6999999
Q ss_pred ecCC------HHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHH
Q psy2878 82 SSDN------EFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPI 155 (181)
Q Consensus 82 s~d~------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~ 155 (181)
+.+. .+.+++|++++ +++||++.|.+.++++.|++. ..|++||||++|+|++.+.+. ...+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~D~~~~~~~~~~v~-----~~P~~~~id~~G~i~~~~~G~----~~~~ 134 (143)
T d2b5xa1 68 HMPRSEDDLDPGKIKETAAEH----DITQPIFVDSDHALTDAFENE-----YVPAYYVFDKTGQLRHFQAGG----SGMK 134 (143)
T ss_dssp ECCCSTTTSSHHHHHHHHHHT----TCCSCEEECSSCHHHHHTCCC-----CSSEEEEECTTCBEEEEEESC----STTH
T ss_pred EeeccccccchhhhhhHHHhh----ccCccccccCccchHHHcCCC-----cCCEEEEECCCCEEEEEEECC----CCHH
Confidence 8642 45678888887 999999999999999999986 678999999999999999642 2345
Q ss_pred HHHHHHHhh
Q psy2878 156 ETLRILDAI 164 (181)
Q Consensus 156 ~ll~~l~~l 164 (181)
++.+.|++|
T Consensus 135 ~l~~~l~~l 143 (143)
T d2b5xa1 135 MLEKRVNRV 143 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 666666553
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.94 E-value=4.8e-27 Score=171.48 Aligned_cols=140 Identities=16% Similarity=0.242 Sum_probs=118.6
Q ss_pred ccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 3 TIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
..+.++|+|+++ |.+| ++++|++++||++||+|| ++||+.|..+++.++++++++.+.++.+++|+
T Consensus 31 ~~~~~~Pdf~l~---------d~~G----~~v~L~~~kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs 96 (176)
T d1jfua_ 31 SAPLKLPDLAFE---------DADG----KPKKLSDFRGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAIN 96 (176)
T ss_dssp CSCCBCCCCEEE---------CTTS----CEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEE
T ss_pred CCCCcCCCeEEE---------CCCc----CEEeHHHhCCCEEEEEec-cCcccchHHHHHhhhhcccccccccccccccc
Confidence 356779999999 9999 999999999999999998 88999999999999999999999999999999
Q ss_pred cC--CHHHHHHHHHHcCCCcccce-eEEEcCCchHHHHhCCC-CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHH
Q psy2878 83 SD--NEFVKLAWRRENSNLYKLNH-WQFSDTNGSLIDQLGIR-HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETL 158 (181)
Q Consensus 83 ~d--~~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~gv~-~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll 158 (181)
.| +.+..++|.+++ ++++ +++.|.+..+.+.|+.. ...+ .|++||||++|+|++++.+. ...+.++++
T Consensus 97 ~d~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~v~~--~P~~~lID~~G~I~~~~~G~--~~~~~~e~~ 168 (176)
T d1jfua_ 97 IDTRDPEKPKTFLKEA----NLTRLGYFNDQKAKVFQDLKAIGRALG--MPTSVLVDPQGCEIATIAGP--AEWASEDAL 168 (176)
T ss_dssp CCCSCTTHHHHHHHHT----TCCTTCCEECTTCHHHHHHHTTTCCSS--SSEEEEECTTSBEEEEEESC--CCTTSHHHH
T ss_pred ccccchhhhhhhHhhh----CCcceeeeecchhHHHHHHhhhccCCC--CCeEEEEcCCCEEEEEEECC--CCCChHHHH
Confidence 76 577889999987 7765 47888899998888765 3333 46999999999999998632 234458888
Q ss_pred HHHHhh
Q psy2878 159 RILDAI 164 (181)
Q Consensus 159 ~~l~~l 164 (181)
+.|+++
T Consensus 169 ~~l~al 174 (176)
T d1jfua_ 169 KLIRAA 174 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888876
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=1.4e-25 Score=156.57 Aligned_cols=126 Identities=16% Similarity=0.258 Sum_probs=107.3
Q ss_pred CCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec-CCHH
Q psy2878 9 SSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS-DNEF 87 (181)
Q Consensus 9 P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~-d~~~ 87 (181)
.+|+++ |.+| +++++++++||++||+|| ++|||+|+.++|.|.+++++++ ++.+++|+. |...
T Consensus 6 ~df~~~---------~~~G----~~~~l~~~~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~ 69 (134)
T d1zzoa1 6 LQFSAK---------TLDG----HDFHGESLLGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVP 69 (134)
T ss_dssp GCCEEE---------BTTS----CEEEGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHH
T ss_pred cceeEE---------cCCC----CEEeHHHhCCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccch
Confidence 469998 9999 999999999999999999 8899999999999999999886 567777776 5677
Q ss_pred HHHHHHHHcCCCccc-ceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 88 VKLAWRRENSNLYKL-NHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
..++|+.++ +. .|+++.|+++++++.||+. ..|++||||++|+|+++. +. ...+++.+.|++|
T Consensus 70 ~~~~~~~~~----~~~~~~~l~D~~~~~~~~~~v~-----~~P~~~iiD~~G~i~~~~-g~----~~~~~l~~~i~~L 133 (134)
T d1zzoa1 70 AMQEFVNKY----PVKTFTQLADTDGSVWANFGVT-----QQPAYAFVDPHGNVDVVR-GR----MSQDELTRRVTAL 133 (134)
T ss_dssp HHHHHHHHT----TCTTSEEEECTTCHHHHHTTCC-----SSSEEEEECTTCCEEEEE-SC----CCHHHHHHHHHHH
T ss_pred hHHHHHHhc----CCcceeEEeeccchHHHhcCCC-----ccCeEEEECCCCeEEEEE-CC----CCHHHHHHHHHhh
Confidence 888888887 54 5899999999999999987 678999999999998754 22 3457788888765
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.4e-25 Score=159.55 Aligned_cols=145 Identities=14% Similarity=0.253 Sum_probs=116.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHHHhcCc-EE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDFNERNA-IL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~~~~~~-~v 78 (181)
+++|+.+|+|++.. +.+| +.++|+++ +||++||+||++.|||.|.. +++.+.+.+++|.+.|+ .+
T Consensus 3 ikVGd~aP~f~l~~--------~~~~----~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i 70 (161)
T d1hd2a_ 3 IKVGDAIPAVEVFE--------GEPG----NKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVV 70 (161)
T ss_dssp CCTTCBCCCCEEEC--------SSTT----CEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEE
T ss_pred CCCCCcCCCeEEEe--------cCCC----cEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEE
Confidence 68999999999972 3567 89999996 89999999999999999955 78889999999999987 56
Q ss_pred EEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CCCC------cceeeEEEEcCCCcEEEEEeccCCCC
Q psy2878 79 LGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HETG------VALRATFIFDPQNIIQHITVNNLNVG 151 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~~g------~~~p~~~liD~~g~i~~~~~~~~~~~ 151 (181)
+++|.|++..+++|.... ....++++++|+++++++.||+. +..+ ...+++++|+++|+|++.+++.....
T Consensus 71 ~~~s~~~~~~~~~~~~~~--~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~ 148 (161)
T d1hd2a_ 71 ACLSVNDAFVTGEWGRAH--KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTG 148 (161)
T ss_dssp EEEESSCHHHHHHHHHHT--TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSC
T ss_pred EEEecCchhhhhhhhhhc--ccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCC
Confidence 789999999999999876 23457899999999999999998 3332 12345566666999999997655554
Q ss_pred CC---HHHHHHH
Q psy2878 152 RN---PIETLRI 160 (181)
Q Consensus 152 ~~---~~~ll~~ 160 (181)
.+ ++++++.
T Consensus 149 ~~~s~a~~vL~~ 160 (161)
T d1hd2a_ 149 LTCSLAPNIISQ 160 (161)
T ss_dssp SSTTSHHHHHHH
T ss_pred CCcCcHHHHHhc
Confidence 44 5555554
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.92 E-value=6.3e-26 Score=159.97 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=105.9
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC------HHHHHHHHHHcC
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN------EFVKLAWRRENS 97 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~------~~~~~~~~~~~~ 97 (181)
+.+| ++++|++++||++||+|| ++|||+|+.+++.|++++++++..++.+++|+.+. .....+|...
T Consensus 10 ~~~~----~~~~l~~~~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~-- 82 (143)
T d2fy6a1 10 TADN----RPASVYLKKDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAG-- 82 (143)
T ss_dssp ETTS----CBGGGGCCTTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTT--
T ss_pred CCCC----CEeeHHHhCCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhh--
Confidence 8899 999999999999999999 99999999999999999999999999999999653 2223333333
Q ss_pred CCcccceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 98 NLYKLNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 98 ~~~~~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
.+...|+++.|+++++++.||+. ..|++||||++|+|++++.+. -+.+++.+.|+++..
T Consensus 83 -~~~~~~~~~~D~~~~~~~~~~v~-----~~P~~~liD~~G~i~~~~~G~----~~~~~~~~~l~~~~a 141 (143)
T d2fy6a1 83 -LNYPKLPVVTDNGGTIAQSLNIS-----VYPSWALIGKDGDVQRIVKGS----INEAQALALIRDPNA 141 (143)
T ss_dssp -SCCTTSCEEECTTCHHHHHTTCC-----SSSEEEEECTTSCEEEEEESC----CCHHHHHHHHHCTTS
T ss_pred -cCCcccccccccchHHHHHcCCC-----ccCEEEEECCCCEEEEEEECC----CCHHHHHHHHHHHhc
Confidence 34678999999999999999987 678999999999999998643 245788888887654
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.92 E-value=2.6e-25 Score=157.15 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=98.4
Q ss_pred ccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 6 QSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 6 ~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
++||+|+++...|. ++.+..+ ..+++++++||++||+|| ++||++|+.+++.++++++. .++.+++|+.+.
T Consensus 1 ~paP~~~lp~~~g~-~~~~~~~----~~~~~~~~kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~---~~~~~~~i~~~~ 71 (144)
T d1knga_ 1 RPAPQTALPPLEGL-QADNVQV----PGLDPAAFKGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVGINYKD 71 (144)
T ss_dssp CBCCCCCBCCCTTC-EETTEEC----CCBCGGGGTTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESC
T ss_pred CCCCCCCCCCCCCc-cccCCcC----CccCHHHhCCCEEEEEee-ccccccccccCchhhhhhhc---cCceeEEEEeee
Confidence 47899999844332 2223334 679999999999999999 88999999999999887554 478999998754
Q ss_pred -HHHHHHHHHHcCCCccccee-EEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEec
Q psy2878 86 -EFVKLAWRRENSNLYKLNHW-QFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVN 146 (181)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~ 146 (181)
....++|..++ +..++ ++.|+++++++.|++. ..|++||||++|+|++++.+
T Consensus 72 ~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~v~-----~~P~~~liD~~G~i~~~~~G 125 (144)
T d1knga_ 72 AADNARRFLGRY----GNPFGRVGVDANGRASIEWGVY-----GVPETFVVGREGTIVYKLVG 125 (144)
T ss_dssp CHHHHHHHHHHH----CCCCSEEEEETTSHHHHHTTCC-----SSCEEEEECTTSBEEEEEES
T ss_pred chHHHHHHHHHc----CCccccccccccchhhhhcCcc-----ccceEEEEcCCCeEEEEEeC
Confidence 56677788876 55554 7889999999999987 57899999999999999864
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.9e-23 Score=151.75 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=113.0
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCC-CChhHHHHHHHHHHHHHhc--CcEEEE
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF-VCPTEISEYNKLVKDFNER--NAILLG 80 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp-~C~~~~~~l~~l~~~~~~~--~~~vi~ 80 (181)
++.++|+|++. |.+| +++++++++||++||+|| .+||| .|+.+++.|.++++++.+. ++.+++
T Consensus 7 ~~~~~p~F~l~---------d~~G----~~vsl~d~~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~ 72 (172)
T d1xzoa1 7 LNYEVEPFTFQ---------NQDG----KNVSLESLKGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 72 (172)
T ss_dssp CCEECCCCEEE---------CTTS----CEEETGGGTTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCcCCCeEEE---------cCCC----CEEcHHHhCCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccc
Confidence 56788999999 9999 999999999999999999 55675 7999999999999999874 588999
Q ss_pred EecC----CHHHHHHHHHHcCCCcccceeEEEcCCch-----HHHHhCCC-C-CCC----cceeeEEEEcCCCcEEEEEe
Q psy2878 81 GSSD----NEFVKLAWRRENSNLYKLNHWQFSDTNGS-----LIDQLGIR-H-ETG----VALRATFIFDPQNIIQHITV 145 (181)
Q Consensus 81 Is~d----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~gv~-~-~~g----~~~p~~~liD~~g~i~~~~~ 145 (181)
||.| +++.+++|++++ ......|.++++.+.+ ..+.|++. . ..+ .+.+.+||||++|+|+..+.
T Consensus 73 isiDp~~Dtp~~l~~y~~~~-~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~ 151 (172)
T d1xzoa1 73 FSVDPENDKPKQLKKFAANY-PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYN 151 (172)
T ss_dssp EESCTTTCCHHHHHHHHTTS-CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEE
T ss_pred cccccccchHHHHHHHHHHh-ccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEc
Confidence 9975 467788888766 2223357788876544 34556665 1 111 35678999999999998873
Q ss_pred ccCCCCCCHHHHHHHHHhhcc
Q psy2878 146 NNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 146 ~~~~~~~~~~~ll~~l~~l~~ 166 (181)
.......+++++.|+++..
T Consensus 152 --g~~~~~~~~l~~dik~~~~ 170 (172)
T d1xzoa1 152 --GVENTPYDDIISDVKSAST 170 (172)
T ss_dssp --SSSSCCHHHHHHHHHHHTC
T ss_pred --CCCCCCHHHHHHHHHHHHh
Confidence 3334568999999988764
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.90 E-value=2.9e-24 Score=151.80 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=96.9
Q ss_pred CCccCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHh-cCcEEE
Q psy2878 1 MKTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNE-RNAILL 79 (181)
Q Consensus 1 ~l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~-~~~~vi 79 (181)
|-.+|..+|+++.. ..+| ++++|++++||+++|+|| ++||++|+.++|.|+++++++.+ .++.++
T Consensus 1 ~~~~~k~~P~~~~~---------~~~~----~~v~l~~~~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi 66 (144)
T d1o73a_ 1 MSGLAKYLPGATNL---------LSKS----GEVSLGSLVGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVV 66 (144)
T ss_dssp CCGGGGTSCTTCCB---------BCTT----SCBCSGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEE
T ss_pred CCCcccCCCCceee---------ccCC----CEEeHHHhCCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEE
Confidence 66789999999988 6777 889999999999999999 88999999999999999999964 689999
Q ss_pred EEecCC-HHHHHHHHHHcCCCcccceeEEEcC---CchHHHHhCCCCCCCcceeeEEEEcCC-CcEEEEE
Q psy2878 80 GGSSDN-EFVKLAWRRENSNLYKLNHWQFSDT---NGSLIDQLGIRHETGVALRATFIFDPQ-NIIQHIT 144 (181)
Q Consensus 80 ~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~gv~~~~g~~~p~~~liD~~-g~i~~~~ 144 (181)
+|+.|. .+...++..+. .. +.+..|. ..++++.|++. ..|++||||++ |+|+..+
T Consensus 67 ~is~d~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~l~~~y~v~-----~~Pt~~lID~~~G~Ii~~~ 126 (144)
T d1o73a_ 67 LISWDENESDFHDYYGKM----PW-LALPFDQRSTVSELGKTFGVE-----SIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp EEECCSSHHHHHHHHTTC----SS-EECCTTCHHHHHHHHHHHTCC-----SSSEEEEEETTTCCEEESC
T ss_pred EEecchhHHHHHHHHHhc----cc-cceeeeccchHHHHHHHcCCC-----cCCEEEEEECCCCEEEeec
Confidence 999885 44555655543 21 2222332 24689999987 56799999998 8998655
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=99.89 E-value=4.9e-23 Score=148.26 Aligned_cols=147 Identities=16% Similarity=0.258 Sum_probs=116.3
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHHHhcCc-EE
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDFNERNA-IL 78 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~~~~~~-~v 78 (181)
+++|+++|+|++..... +..+ ++++++++ +||++||+||++.++|.|.. +++...+..+++.+.|. ++
T Consensus 4 l~vGd~~Pdf~l~~~~~-----~~~~----~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v 74 (162)
T d1tp9a1 4 IAVGDVLPDGKLAYFDE-----QDQL----QEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEI 74 (162)
T ss_dssp CCTTCBCCCCEEEEECT-----TSCE----EEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCCCeEEEeecC-----CCCc----eEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcce
Confidence 78999999999973321 3445 88999985 99999999999999999975 56677777888888765 89
Q ss_pred EEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-CC--CC---cceeeEEEEcCCCcEEEEEeccCCC--
Q psy2878 79 LGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-HE--TG---VALRATFIFDPQNIIQHITVNNLNV-- 150 (181)
Q Consensus 79 i~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~~--~g---~~~p~~~liD~~g~i~~~~~~~~~~-- 150 (181)
++||+|++..+++|..... ...++++++|+++++++.||+. .. .| .+.|++|||| ||+|++.++.....
T Consensus 75 ~~isvd~~~~~~~~~~~~~--~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ve~~~~~~ 151 (162)
T d1tp9a1 75 LCISVNDPFVMKAWAKSYP--ENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEGGGEFT 151 (162)
T ss_dssp EEEESSCHHHHHHHHHTCT--TCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECSSSCCS
T ss_pred eeeeccchhhhhhhhhhcc--cccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEEECCCCCc
Confidence 9999999999999999761 2356999999999999999987 22 22 3578999999 99999999743222
Q ss_pred CCCHHHHHHH
Q psy2878 151 GRNPIETLRI 160 (181)
Q Consensus 151 ~~~~~~ll~~ 160 (181)
..+.+++++.
T Consensus 152 ~s~ae~vLk~ 161 (162)
T d1tp9a1 152 VSSAEDILKD 161 (162)
T ss_dssp SCSHHHHHTT
T ss_pred cCCHHHHHhc
Confidence 1346777654
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.5e-23 Score=146.55 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=96.3
Q ss_pred CCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC-HHHHHHHHHHcCCCcc
Q psy2878 24 EENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN-EFVKLAWRRENSNLYK 101 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~-~~~~~~~~~~~~~~~~ 101 (181)
|..| +.++.+++ +||++||+|| ++||++|+.++|.|++++ +.++.+++++.+. ......+..+. ..
T Consensus 6 d~~g----~~~~~~~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~~----~~~~~vi~i~~~~~~~~~~~~~~~~---~~ 73 (136)
T d1z5ye1 6 DNPG----QFYQADVLTQGKPVLLNVW-ATWCPTSRAEHQYLNQLS----AQGIRVVGMNYKDDRQKAISWLKEL---GN 73 (136)
T ss_dssp SSTT----CEECHHHHHSSSCEEEEEE-CTTCHHHHHHHHHHHHHH----HTTCCEEEEEESCCHHHHHHHHHHH---CC
T ss_pred cCCC----cEecHHHHcCCCEEEEEEE-cCcCCCcCccccchhhhh----hhhhhhcccccccchhhhHHHHHHc---CC
Confidence 5668 99999998 8999999999 889999999999987764 4689999999864 45556666665 23
Q ss_pred cceeEEEcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 102 LNHWQFSDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 102 ~~~~~~~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
..++++.|+++.+++.|++. ..|++||||++|+|++++.+..+...-.+.|.+.|++++.
T Consensus 74 ~~~~~~~d~~~~~~~~~~v~-----~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl~~ 133 (136)
T d1z5ye1 74 PYALSLFDGDGMLGLDLGVY-----GAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK 133 (136)
T ss_dssp CCSEEEEESSCHHHHHHTCC-----SBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHHHH
T ss_pred ccceeecccchhHHHhcccC-----CcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 44557889999999999987 6789999999999999996433222222344445555543
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.87 E-value=6.5e-23 Score=144.44 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=96.1
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEe
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGS 82 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is 82 (181)
+|+.+|+|++. +.+| +++++++++||++||+|| ++||+.|..+++.|.++++++... ++.+++|+
T Consensus 2 ~~k~~P~~~~~---------~~~g----~~v~l~~l~GK~vll~Fw-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is 67 (144)
T d1o8xa_ 2 LDKYLPGIEKL---------RRGD----GEVEVKSLAGKLVFFYFS-ASWCPPARGFTPQLIEFYDKFHESKNFEVVFCT 67 (144)
T ss_dssp GGGTSTTCCEE---------EETT----EEEEGGGGTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred CCCCCCCcEeE---------cCCC----CEEeHHHhCCCEEEEEec-cccccccccccchhHHhhhhccccccccccccc
Confidence 57899999999 8899 999999999999999999 889999999999999999999664 79999999
Q ss_pred cCC-HHHHHHHHHHcCCCcccceeEE-EcCCchHHHHhCCCCCCCcceeeEEEEcCC-CcEEEEE
Q psy2878 83 SDN-EFVKLAWRRENSNLYKLNHWQF-SDTNGSLIDQLGIRHETGVALRATFIFDPQ-NIIQHIT 144 (181)
Q Consensus 83 ~d~-~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~gv~~~~g~~~p~~~liD~~-g~i~~~~ 144 (181)
.|. .+....+.... ....+++. .|...++++.|++. ..|++||||++ |+|+...
T Consensus 68 ~d~~~~~~~~~~~~~---~~~~~~~~~~d~~~~l~~~y~v~-----~~Pt~~liD~~~G~Vi~~~ 124 (144)
T d1o8xa_ 68 WDEEEDGFAGYFAKM---PWLAVPFAQSEAVQKLSKHFNVE-----SIPTLIGVDADSGDVVTTR 124 (144)
T ss_dssp CCCSHHHHHHHHTTC---SSEECCGGGHHHHHHHHHHTTCC-----SSSEEEEEETTTCCEEESC
T ss_pred ccccHHHHHHHHhhc---cccceeeecccchhhHHHHcCCC-----cCCEEEEEeCCCCEEEEEe
Confidence 885 34444444332 23344433 24567899999997 56899999998 8997544
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=99.87 E-value=6.8e-22 Score=142.33 Aligned_cols=146 Identities=18% Similarity=0.292 Sum_probs=112.6
Q ss_pred cCccCCCcEEecccCCCCCCCCCcccceeeeecCCC-CCCeEEEEEeeCCCCCCChhHHHHHHHHH-HHHHhcCc-EEEE
Q psy2878 4 IGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF-PGKWKIFYFYPKDFTFVCPTEISEYNKLV-KDFNERNA-ILLG 80 (181)
Q Consensus 4 ~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~~~~~l~~l~-~~~~~~~~-~vi~ 80 (181)
+|+.+|+|+++. ..| +.++.++|+++ +||++||+||++.++|.|..++..+...+ +.+...++ .++.
T Consensus 3 ~Gd~~Pdftl~~---------~~~-~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~ 72 (163)
T d1nm3a2 3 EGKKVPQVTFRT---------RQG-DKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILV 72 (163)
T ss_dssp TTSBCCCCEEEE---------EET-TEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCeEEEE---------EcC-CCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceee
Confidence 699999999994 333 12368999996 99999999999999999999987765554 34444444 5677
Q ss_pred EecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC-C--CCC---cceeeEEEEcCCCcEEEEEeccCCCCC--
Q psy2878 81 GSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR-H--ETG---VALRATFIFDPQNIIQHITVNNLNVGR-- 152 (181)
Q Consensus 81 Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-~--~~g---~~~p~~~liD~~g~i~~~~~~~~~~~~-- 152 (181)
++.+++..+.+|.++. ....+++++|++..+++.||+. . ..| .+.|++|||| ||+|++.+.....+++
T Consensus 73 ~~s~d~~~~~a~~~~~---~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~~~~~g~~~ 148 (163)
T d1nm3a2 73 VSVNDTFVMNAWKEDE---KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPF 148 (163)
T ss_dssp EESSCHHHHHHHHHHT---TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCC
T ss_pred eecCCHHHHHHHhhhh---ccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEecCCCCCCc
Confidence 7777777777777765 4667999999999999999997 2 222 4688999999 9999999986544433
Q ss_pred ---CHHHHHHHHHh
Q psy2878 153 ---NPIETLRILDA 163 (181)
Q Consensus 153 ---~~~~ll~~l~~ 163 (181)
+++++|+.|.+
T Consensus 149 ~~s~ae~vL~~L~~ 162 (163)
T d1nm3a2 149 KVSDADTMLKYLAP 162 (163)
T ss_dssp SSSSHHHHHHHHCT
T ss_pred cccCHHHHHHHHcc
Confidence 57888888753
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.86 E-value=6e-22 Score=139.86 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=86.8
Q ss_pred CCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc-CcEEEEEecCC-HHHHHHHHHHcCCCcc
Q psy2878 24 EENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER-NAILLGGSSDN-EFVKLAWRRENSNLYK 101 (181)
Q Consensus 24 d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~-~~~vi~Is~d~-~~~~~~~~~~~~~~~~ 101 (181)
+.+| ..++|++++||+++|+|| ++||++|+.++|.|+++++++.+. ++.+++|+.|. .++..+|.++. +
T Consensus 15 ~~~~----~~v~ls~l~GK~vll~Fw-AtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~----~ 85 (144)
T d1i5ga_ 15 KGAA----ADIALPSLAGKTVFFYFS-ASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKM----P 85 (144)
T ss_dssp ETTE----EEEEGGGGTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTC----S
T ss_pred cCCC----CEeeHHHcCCCEEEEEEE-ecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhC----C
Confidence 5677 899999999999999999 999999999999999999999874 79999999985 55556666655 6
Q ss_pred cceeEEEcCC--chHHHHhCCCCCCCcceeeEEEEcCC-CcEEE
Q psy2878 102 LNHWQFSDTN--GSLIDQLGIRHETGVALRATFIFDPQ-NIIQH 142 (181)
Q Consensus 102 ~~~~~~~D~~--~~~~~~~gv~~~~g~~~p~~~liD~~-g~i~~ 142 (181)
..+..+.|.+ ..+++.|++. ..|+++|||++ |+|+.
T Consensus 86 ~~~~~~~d~~~~~~l~~~y~v~-----~iPt~~lid~~~G~vi~ 124 (144)
T d1i5ga_ 86 WLALPFEDRKGMEFLTTGFDVK-----SIPTLVGVEADSGNIIT 124 (144)
T ss_dssp SEECCTTCHHHHHHHHHHTTCC-----SSSEEEEEETTTCCEEE
T ss_pred CCceeeEChHHHHHHHHHCCCC-----CcCEEEEEeCCCCEEEe
Confidence 5555555544 3588999987 56799999997 89974
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=6.1e-20 Score=130.33 Aligned_cols=133 Identities=14% Similarity=0.196 Sum_probs=96.8
Q ss_pred CCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCC-CChhHHHHHHHHHHHHHhcC----cEEEEEecC----CHHHHH
Q psy2878 20 FNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTF-VCPTEISEYNKLVKDFNERN----AILLGGSSD----NEFVKL 90 (181)
Q Consensus 20 ~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp-~C~~~~~~l~~l~~~~~~~~----~~vi~Is~d----~~~~~~ 90 (181)
|.|.|++| ++++|++++||++||+||.+ ||| .|..+++.+.++++++.+.+ +.++.++.+ ......
T Consensus 3 F~L~d~~G----~~vsl~d~~GK~vll~F~~t-~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (160)
T d1wp0a1 3 FSLTTHTG----ERKTDKDYLGQWLLIYFGFT-HCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIA 77 (160)
T ss_dssp CEEEETTS----CEEEGGGGTTSEEEEEEECT-TCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHH
T ss_pred eEEEcCCC----CEEcHHHhCCCEEEEEEECC-CCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHH
Confidence 33349999 99999999999999999955 564 79999999999999987743 456666654 345555
Q ss_pred HHHHHcCCCcccceeEEEcCC---chHHHHhCCC-CC--CC-------cceeeEEEEcCCCcEEEEEeccCCCCCCHHHH
Q psy2878 91 AWRRENSNLYKLNHWQFSDTN---GSLIDQLGIR-HE--TG-------VALRATFIFDPQNIIQHITVNNLNVGRNPIET 157 (181)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~-~~--~g-------~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~l 157 (181)
++.... +.+|..+.+.. ..+.+.|++. .. .+ .+.+++|||||+|+|+.++.. ..+.+++
T Consensus 78 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~----~~~~~~i 149 (160)
T d1wp0a1 78 NYVKEF----SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQ----NKRKGEI 149 (160)
T ss_dssp HHHHTT----CTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEET----TCCHHHH
T ss_pred HHHhhc----CCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECC----CCCHHHH
Confidence 655554 77888777644 4677888876 11 11 245789999999999988731 2455677
Q ss_pred HHHHHhhc
Q psy2878 158 LRILDAIQ 165 (181)
Q Consensus 158 l~~l~~l~ 165 (181)
.+.|+++.
T Consensus 150 ~~~I~~~l 157 (160)
T d1wp0a1 150 AASIATHM 157 (160)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776553
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3.8e-19 Score=126.50 Aligned_cols=141 Identities=12% Similarity=0.175 Sum_probs=98.1
Q ss_pred CCcEEecccCCCCCCCCCcccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc---CcEEEEEecCC
Q psy2878 9 SSYRVIGVKPGFNLPEENNVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER---NAILLGGSSDN 85 (181)
Q Consensus 9 P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~---~~~vi~Is~d~ 85 (181)
+||+|. |++| +++++++++||++||.||.+.||+.|......+..+++.+... .+.++.++.++
T Consensus 7 ~dF~l~---------d~~G----~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (169)
T d2b7ka1 7 GPFHLE---------DMYG----NEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP 73 (169)
T ss_dssp CCCEEE---------ETTS----CEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred CCeEEE---------eCCC----CEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeecccc
Confidence 578888 9999 9999999999999999997776677888877777777766653 46666666554
Q ss_pred ----HHHHHHHHHHcCCCcccceeEEEcCC---chHHHHhCCC-CC-------CC---cceeeEEEEcCCCcEEEEEecc
Q psy2878 86 ----EFVKLAWRRENSNLYKLNHWQFSDTN---GSLIDQLGIR-HE-------TG---VALRATFIFDPQNIIQHITVNN 147 (181)
Q Consensus 86 ----~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv~-~~-------~g---~~~p~~~liD~~g~i~~~~~~~ 147 (181)
.+....+... ....+....... ....+.|+++ .. .+ .+++++||||++|+|+.++...
T Consensus 74 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~ 149 (169)
T d2b7ka1 74 ARDSPAVLKEYLSD----FHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRN 149 (169)
T ss_dssp TTCCHHHHHHHHTT----SCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTT
T ss_pred ccCchhhhhhhhcc----ccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCC
Confidence 2333333333 255555554433 4555666665 11 11 2468999999999999998555
Q ss_pred CCCCCCHHHHHHHHHhhcc
Q psy2878 148 LNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 148 ~~~~~~~~~ll~~l~~l~~ 166 (181)
..+....++|++.|+++..
T Consensus 150 ~~~~~~~~~I~e~ik~ll~ 168 (169)
T d2b7ka1 150 YDEKTGVDKIVEHVKSYVP 168 (169)
T ss_dssp CCTTHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 5556667889999988753
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.80 E-value=7.2e-19 Score=127.04 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=116.4
Q ss_pred ccCccCCCcEEecccCCC-CCCCCCc-ccceeeeecCCC-CCCeEEEEEeeCCCCCCChh-HHHHHHHHHHHH-HhcCc-
Q psy2878 3 TIGQSLSSYRVIGVKPGF-NLPEENN-VSAFKVITESSF-PGKWKIFYFYPKDFTFVCPT-EISEYNKLVKDF-NERNA- 76 (181)
Q Consensus 3 ~~G~~~P~f~l~~~~~~~-~~~d~~G-~~~~~~~~l~~~-~gk~~ll~F~~~~~cp~C~~-~~~~l~~l~~~~-~~~~~- 76 (181)
++|+.+|+.++....+.. ...+.+| ...+++++++++ +||.+||+++++.++|.|.. ++|.+.+.+++| ++.|+
T Consensus 1 k~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd 80 (179)
T d1xiya1 1 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD 80 (179)
T ss_dssp CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred CCCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc
Confidence 478999998874211000 0001222 223367888886 89999999999999999966 699999999999 46787
Q ss_pred EEEEEecCCHHHHHHHHHHcCCCcccc-eeEEEcCCchHHHHhCCC-C--CCC---cceeeEEEEcCCCcEEEEEeccCC
Q psy2878 77 ILLGGSSDNEFVKLAWRRENSNLYKLN-HWQFSDTNGSLIDQLGIR-H--ETG---VALRATFIFDPQNIIQHITVNNLN 149 (181)
Q Consensus 77 ~vi~Is~d~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~gv~-~--~~g---~~~p~~~liD~~g~i~~~~~~~~~ 149 (181)
+|++||+|++..+++|.+.. +.+ ..+++|+++++++.+|+. + ..| .+.|.++||| ||+|.+.+.....
T Consensus 81 ~I~~iSvnD~fv~~aW~~~~----~~~~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE~~~ 155 (179)
T d1xiya1 81 DIYCITNNDIYVLKSWFKSM----DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKDK 155 (179)
T ss_dssp EEEEEESSCHHHHHHHHHHT----TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSSC
T ss_pred eEEEEecCCHHHHHHHHhhc----CcceEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEeCCC
Confidence 79999999999999999987 444 589999999999999997 2 233 3578899999 9999999975322
Q ss_pred C---------CCCHHHHHHHHHh
Q psy2878 150 V---------GRNPIETLRILDA 163 (181)
Q Consensus 150 ~---------~~~~~~ll~~l~~ 163 (181)
. ...++.+|+.|++
T Consensus 156 ~~~~~~dp~~vSsae~iL~~L~~ 178 (179)
T d1xiya1 156 QHNIQTDPYDISTVNNVKEFLKN 178 (179)
T ss_dssp CTTCSSCCCSTTSHHHHHHHHHC
T ss_pred CCCCCCCCcccCCHHHHHHHHhc
Confidence 2 1457788887764
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.2e-17 Score=121.93 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=91.1
Q ss_pred CCCcEEecccCCCCCCCCC-cccceeeeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC-
Q psy2878 8 LSSYRVIGVKPGFNLPEEN-NVSAFKVITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN- 85 (181)
Q Consensus 8 ~P~f~l~~~~~~~~~~d~~-G~~~~~~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~- 85 (181)
+-||++. |.+ | ++++|++++||++||+|| |+||+.|..+++.|+++|++|+++|+.|+++..+.
T Consensus 3 iydf~~~---------~l~~g----~~vsL~~ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF 68 (184)
T d2f8aa1 3 VYAFSAR---------PLAGG----EPVSLGSLRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF 68 (184)
T ss_dssp GGGCEEC---------BTTCS----SCEEGGGGTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCS
T ss_pred eeeeEEE---------ECCCC----CEecHHHcCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeecccc
Confidence 4577777 765 6 789999999999999998 99999999999999999999999999999998653
Q ss_pred -------HHHHHHHHHHc--CCCcccceeEEEcCC------chHHHHh----CCC-C-CCC-----------------cc
Q psy2878 86 -------EFVKLAWRREN--SNLYKLNHWQFSDTN------GSLIDQL----GIR-H-ETG-----------------VA 127 (181)
Q Consensus 86 -------~~~~~~~~~~~--~~~~~~~~~~~~D~~------~~~~~~~----gv~-~-~~g-----------------~~ 127 (181)
.++..+|++.. ...++.+|++....+ ..+.+-+ +.. . ..+ +.
T Consensus 69 ~~qE~~~~~ei~~f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~ 148 (184)
T d2f8aa1 69 GHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVA 148 (184)
T ss_dssp TTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCC
T ss_pred ccccccchhhhhhhhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCcc
Confidence 55777777642 223477888876422 2232211 111 0 000 01
Q ss_pred -eeeEEEEcCCCcEEEEEe
Q psy2878 128 -LRATFIFDPQNIIQHITV 145 (181)
Q Consensus 128 -~p~~~liD~~g~i~~~~~ 145 (181)
+-+.||||++|+|+.++.
T Consensus 149 WNFtKFLIdr~G~vv~rf~ 167 (184)
T d2f8aa1 149 WNFEKFLVGPDGVPLRRYS 167 (184)
T ss_dssp STTCEEEECTTSCEEEEEC
T ss_pred ceEEEEEECCCCCEEEEEC
Confidence 237899999999999984
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=2.4e-11 Score=80.73 Aligned_cols=90 Identities=13% Similarity=0.214 Sum_probs=67.2
Q ss_pred cCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHH
Q psy2878 36 ESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLI 115 (181)
Q Consensus 36 l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 115 (181)
|++..||++||.|| ++||++|....|.++++.+++.+ .+.++.|..|. ...++
T Consensus 20 l~~~~~k~vlv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d~-------------------------~~~l~ 72 (111)
T d1xwaa_ 20 LTKASGKLVVLDFF-ATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDE-------------------------CEDIA 72 (111)
T ss_dssp HHHHTTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT-------------------------CHHHH
T ss_pred HHhcCCCEEEEEEE-CCcccCccccchhHHHHhhhccc-ceEEEEEEeec-------------------------Ccchh
Confidence 44557899999999 99999999999999999988874 35666665543 34566
Q ss_pred HHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 116 DQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 116 ~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+.|++. ..|+.+++ ++|+++.++.+ ...+++.+.|++
T Consensus 73 ~~~~V~-----~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~I~~ 109 (111)
T d1xwaa_ 73 MEYNIS-----SMPTFVFL-KNGVKVEEFAG-----ANAKRLEDVIKA 109 (111)
T ss_dssp HHTTCC-----SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHH
T ss_pred hcCCCc-----cccEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHh
Confidence 778886 56787777 69999988853 234566666664
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=5.6e-12 Score=84.53 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=65.3
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHH---HHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcC
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYN---KLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDT 110 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~---~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~ 110 (181)
..+++.+||+++|.|| ++||++|+...+.+. +..+.+. ++.++.+..+... +.
T Consensus 15 ~~l~~~~gK~vlv~F~-a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~---------------------~~ 70 (117)
T d2fwha1 15 QALVEAKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAND---------------------AQ 70 (117)
T ss_dssp HHHHHHTTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCC---------------------HH
T ss_pred HHHHHcCCCeEEEEEe-cccCCcccccchhHHhHHHHHHhcc--ceEEEecccccch---------------------hH
Confidence 3456668999999999 999999998888773 3333332 4555555543211 11
Q ss_pred CchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 111 NGSLIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 111 ~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
+.++++.|++. ..|+++++|++|+++.... ..-..+.+++++.|++
T Consensus 71 ~~~l~~~~~v~-----~~Pt~~~~~~~G~~~~~~~--~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 71 DVALLKHLNVL-----GLPTILFFDGQGQEHPQAR--VTGFMDAETFSAHLRD 116 (117)
T ss_dssp HHHHHHHTTCC-----SSSEEEEECTTSCBCGGGC--BCSCCCHHHHHHHHHH
T ss_pred HHHHHhhhehh-----hceEEEEEeCCCcEEeccc--ccccCCHHHHHHHHhc
Confidence 24567788886 5679999999999874321 1112467888888764
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.18 E-value=1.1e-10 Score=76.97 Aligned_cols=88 Identities=8% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|.|| +.||++|....|.+.++.+++.. .+.++-|..|. +..++++|+
T Consensus 18 s~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~-------------------------~~~l~~~~~ 70 (107)
T d1dbya_ 18 SSVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDE-------------------------SPNVASEYG 70 (107)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTT-------------------------CHHHHHHHT
T ss_pred CCCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEeccc-------------------------chhHHHHhc
Confidence 3689999999 88999999999999998877765 46777676543 346788899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++. +|+.+.++.+. .+.+++.+.|++.
T Consensus 71 V~-----~~Pt~~~~~-~G~~v~~~~G~----~~~~~l~~~i~~~ 105 (107)
T d1dbya_ 71 IR-----SIPTIMVFK-GGKKCETIIGA----VPKATIVQTVEKY 105 (107)
T ss_dssp CC-----SSCEEEEES-SSSEEEEEESC----CCHHHHHHHHHHH
T ss_pred cc-----ceEEEEEEE-CCeEEEEEeCC----CCHHHHHHHHHHh
Confidence 87 677988885 89999988532 4567888888765
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.18 E-value=1.7e-10 Score=76.04 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=68.3
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|+...+.+.++.+++.+ .+.++.|..| .+..+++.|++
T Consensus 20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d-------------------------~~~~l~~~~~I 72 (108)
T d1thxa_ 20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEID-------------------------PNPTTVKKYKV 72 (108)
T ss_dssp SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEEST-------------------------TCHHHHHHTTC
T ss_pred CCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceeccc-------------------------ccHHHHHHhcc
Confidence 478999888 89999999999999999888875 3777777654 23567888998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. ..|+++++. +|+.+.++.+. ...+++.+.|++.
T Consensus 73 ~-----~~Pt~~~~~-~g~~v~~~~G~----~~~~~l~~~i~~~ 106 (108)
T d1thxa_ 73 E-----GVPALRLVK-GEQILDSTEGV----ISKDKLLSFLDTH 106 (108)
T ss_dssp C-----SSSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred c-----CCCEEEEEE-CCEEEEEEeCC----CCHHHHHHHHHHh
Confidence 7 667988885 89999888532 4567888888764
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.16 E-value=8.5e-11 Score=77.18 Aligned_cols=88 Identities=11% Similarity=0.130 Sum_probs=68.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|.|| +.||++|....|.+.++.+++.+ .+.++.|..|. +..+++.|+
T Consensus 16 ~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 68 (105)
T d1nw2a_ 16 GDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDE-------------------------NPETTSQFG 68 (105)
T ss_dssp SSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECCC-------------------------CcccHHHCC
Confidence 3578999998 89999999999999999998875 47887777643 456677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+.+.++.+. ...+++.+.|+++
T Consensus 69 V~-----~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~~ 103 (105)
T d1nw2a_ 69 IM-----SIPTLILF-KGGEPVKQLIGY----QPKEQLEAQLADV 103 (105)
T ss_dssp CC-----BSSEEEEE-ETTEEEEEEESC----CCHHHHHHHTTTT
T ss_pred cc-----eeeEEEEE-ECCEEEEEEECC----CCHHHHHHHHHHH
Confidence 87 56788888 589999888532 3467777777654
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.14 E-value=1.6e-10 Score=75.65 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=66.4
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|....|.+.++.+++... +.++.|..|. +..+++.|++
T Consensus 17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~d~-------------------------~~~l~~~~~V 69 (104)
T d1fb6a_ 17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDE-------------------------APGIATQYNI 69 (104)
T ss_dssp SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------------------------CHHHHHHTTC
T ss_pred CCcEEEEEE-cCccCCccccCchhHHHHHhhcCc-cceeEEeccc-------------------------chhhhhhcce
Confidence 478999998 899999999999999998888653 4555555543 3467888998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. ..|+.+++ ++|+.+.++.+. .+.+++.+.|+++
T Consensus 70 ~-----~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~~ 103 (104)
T d1fb6a_ 70 R-----SIPTVLFF-KNGERKESIIGA----VPKSTLTDSIEKY 103 (104)
T ss_dssp C-----SSSEEEEE-ETTEEEEEEEEC----CCHHHHHHHHHHH
T ss_pred e-----eeeEEEEE-EcCeEEEEEeCC----CCHHHHHHHHHHh
Confidence 7 56787777 699999888643 4567788777654
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.14 E-value=1.3e-10 Score=77.44 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=68.6
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
.|+++|.|| +.||++|....|.+.++.+++. ++.++.|..+. .+.++++.|++
T Consensus 25 ~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~------------------------~~~~l~~~~~V 77 (112)
T d1f9ma_ 25 DKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ------------------------ENKTLAKELGI 77 (112)
T ss_dssp TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS------------------------TTHHHHHHHCC
T ss_pred CCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccccc------------------------cchhhHhheee
Confidence 478888888 8899999999999999998875 57777776542 12467788998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
. ..|+.+++ ++|+++.++.+ .+.+++++.|++++
T Consensus 78 ~-----~~Pt~~~~-k~G~~v~~~~G-----~~~~~l~e~i~~~~ 111 (112)
T d1f9ma_ 78 R-----VVPTFKIL-KENSVVGEVTG-----AKYDKLLEAIQAAR 111 (112)
T ss_dssp S-----SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHHH
T ss_pred c-----cCCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHcc
Confidence 7 66788888 79999999853 35578888887764
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.13 E-value=1.7e-10 Score=76.72 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|+++|.|| +.||++|....|.+.++.+++.. ++.++.|..|. +.+++++|+
T Consensus 23 ~~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~ 75 (112)
T d1ep7a_ 23 EHKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA-------------------------VAAVAEAAG 75 (112)
T ss_dssp HTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------------------------THHHHHHHT
T ss_pred cCCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeeccc-------------------------ccccccccc
Confidence 4688999998 99999999999999999998874 48888887753 345778899
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+.+++ ++|+.+.++.+ .+.+++.+.|+++.
T Consensus 76 v~-----~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k~~ 110 (112)
T d1ep7a_ 76 IT-----AMPTFHVY-KDGVKADDLVG-----ASQDKLKALVAKHA 110 (112)
T ss_dssp CC-----BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHHH
T ss_pred cc-----CCCEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHHHh
Confidence 87 56787777 69999998853 35678888887654
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.5e-10 Score=75.20 Aligned_cols=87 Identities=14% Similarity=0.210 Sum_probs=65.1
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|+...+.+.++.+++.. .+.++.|..| .+..+++.|++
T Consensus 20 ~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d-------------------------~~~~l~~~~~v 72 (108)
T d2trxa_ 20 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNID-------------------------QNPGTAPKYGI 72 (108)
T ss_dssp SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETT-------------------------TCTTHHHHTTC
T ss_pred CCcEEEEEE-CCCCCCccccCcHHHHHHHHhhc-ceeeeecccc-------------------------chhhHHHHhCC
Confidence 578888888 99999999999999888776654 3555555443 34678889998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. ..|+.+++ ++|+.+.++.+. ...+++.+.|++.
T Consensus 73 ~-----~~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~~ 106 (108)
T d2trxa_ 73 R-----GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDAN 106 (108)
T ss_dssp C-----SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred C-----cEEEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHHh
Confidence 7 66777777 699999888532 4567788887754
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.11 E-value=4.6e-10 Score=73.71 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=60.8
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc---CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER---NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSL 114 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 114 (181)
...++..|++|| +.||++|+...|.+.++..+.... .+.+..|..+. ..++
T Consensus 12 ~~~~~v~i~~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~-------------------------~~~l 65 (107)
T d1a8la2 12 NIDQDVRILVFV-TPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-------------------------YPEW 65 (107)
T ss_dssp TCCSCEEEEEEE-CSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-------------------------CHHH
T ss_pred hcCCCeEEEEEE-cCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc-------------------------cccc
Confidence 334444555666 999999999999999987665442 23444444331 2357
Q ss_pred HHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 115 IDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 115 ~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
++.|++. ..|++ ++.++|+++.++.+. ...+++++.|+++
T Consensus 66 ~~~~~V~-----~vPTi-~i~~~G~~~~~~~G~----~~~~~~~~~i~~a 105 (107)
T d1a8la2 66 ADQYNVM-----AVPKI-VIQVNGEDRVEFEGA----YPEKMFLEKLLSA 105 (107)
T ss_dssp HHHTTCC-----SSCEE-EEEETTEEEEEEESC----CCHHHHHHHHHHH
T ss_pred ccccccc-----cceEE-EEEeCCeEEEEEECC----CCHHHHHHHHHHh
Confidence 7889987 56765 566899999888543 3457777777654
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.6e-11 Score=82.86 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=64.2
Q ss_pred cCCCCCCeEEEEEeeC------CCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEc
Q psy2878 36 ESSFPGKWKIFYFYPK------DFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSD 109 (181)
Q Consensus 36 l~~~~gk~~ll~F~~~------~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D 109 (181)
+++.+||+++|+||.+ +||++|+...|.+.++.+.+.+ ++.++.|.++... + +.|
T Consensus 16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~---~---------------~~d 76 (119)
T d1woua_ 16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKP---Y---------------WKD 76 (119)
T ss_dssp HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHH---H---------------HHC
T ss_pred HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCc---c---------------cch
Confidence 3556889999999943 4999999999999999887764 5899999988632 1 234
Q ss_pred CCchHHHHhCCCCCCCcceeeEEEEcCCCcEE
Q psy2878 110 TNGSLIDQLGIRHETGVALRATFIFDPQNIIQ 141 (181)
Q Consensus 110 ~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~ 141 (181)
.+..+++.|++. ..|++++++..+++.
T Consensus 77 ~~~~l~~~~~V~-----~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 77 PNNDFRKNLKVT-----AVPTLLKYGTPQKLV 103 (119)
T ss_dssp TTCHHHHHHCCC-----SSSEEEETTSSCEEE
T ss_pred hhhhHHHhCCeE-----EEEEEEEEECCeEEe
Confidence 567899999997 667999998666654
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.08 E-value=3.8e-10 Score=75.20 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=65.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++++||.|| ++||++|....|.+.++.+.+. ++.++-|..|. +..+++.|+
T Consensus 27 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~~-------------------------~~~l~~~~~ 78 (114)
T d1xfla_ 27 SKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE-------------------------LKSVASDWA 78 (114)
T ss_dssp TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------------------------SHHHHHHTT
T ss_pred cCCeEEEEEE-cCCCCCccccccchhhhccccc--ccceeEEEeee-------------------------ceeeccccc
Confidence 4688888898 8999999999999999988775 56666665543 346778898
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+++.++.+ .+.+++.+.|++.
T Consensus 79 V~-----~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k~ 112 (114)
T d1xfla_ 79 IQ-----AMPTFMFL-KEGKILDKVVG-----AKKDELQSTIAKH 112 (114)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred ee-----eeEEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHHh
Confidence 87 56788877 79999998853 2457777777654
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.07 E-value=9e-11 Score=79.06 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=57.8
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
+.+++.|+ +.|||.|+...|.|.++.++|.+..+.+.-|..|. +.++++.||+.
T Consensus 31 ~~vll~f~-a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~-------------------------~~~l~~~~~V~ 84 (119)
T d2es7a1 31 GVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ-------------------------SEAIGDRFNVR 84 (119)
T ss_dssp EEEEECCC-SCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH-------------------------HHHHHHTTTCC
T ss_pred cEEEEeec-CCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC-------------------------CHHHHHhcCcC
Confidence 45555555 88999999999999999999986566666665431 24677788987
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
..|+.+++ ++|+.+..+.+. .+.+++++.|+++
T Consensus 85 -----~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~l 117 (119)
T d2es7a1 85 -----RFPATLVF-TDGKLRGALSGI----HPWAELLTLMRSI 117 (119)
T ss_dssp -----SSSEEEEE-SCC----CEESC----CCHHHHHHHHHHH
T ss_pred -----cceEEEEE-EcCeEEEEeeCC----CCHHHHHHHHHHH
Confidence 67888888 699999988533 4567788877765
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=3.9e-10 Score=74.00 Aligned_cols=86 Identities=12% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|++||.|| ++||++|....|.+.++.+++. ++.++-|..|. +..+++.|+
T Consensus 19 ~~k~vvv~F~-a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d~-------------------------~~~~~~~~~ 70 (105)
T d2ifqa1 19 GDKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDD-------------------------CQDVASECE 70 (105)
T ss_dssp TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCEEEEEEE-cCCccchhhhhhhhhhhccccc--cceeeeccccc-------------------------CHhHHHHcC
Confidence 4578888888 9999999999999999988775 45566565543 245667788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+.+.++.+ .+.+++.+.|+++
T Consensus 71 V~-----~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~~~ 104 (105)
T d2ifqa1 71 VK-----CMPTFQFF-KKGQKVGEFSG-----ANKEKLEATINEL 104 (105)
T ss_dssp CC-----BSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred ce-----EEEEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHhh
Confidence 87 66788888 69999999853 2457777777764
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.05 E-value=1.9e-10 Score=76.72 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|+|| ++||++|....|.|.++.+++. ++.++-|..|. +.++++.||
T Consensus 25 ~~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------------------------~~~l~~~~~ 76 (113)
T d1r26a_ 25 EDILTVAWFT-AVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN-------------------------NSEIVSKCR 76 (113)
T ss_dssp SSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT-------------------------CHHHHHHTT
T ss_pred CCCeEEEEEE-CCCCccchhhceeccccccccc--ccccccccccc-------------------------chhhHHHcc
Confidence 3568888888 9999999999999999988875 68888777754 356778889
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+.+.++.+ .+.+.+.+.|+++
T Consensus 77 V~-----~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~l~~~ 110 (113)
T d1r26a_ 77 VL-----QLPTFIIA-RSGKMLGHVIG-----ANPGMLRQKLRDI 110 (113)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred cc-----CCCEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHH
Confidence 87 56787777 79999998863 2335555555543
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.04 E-value=2.9e-13 Score=96.71 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=39.7
Q ss_pred ecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCC
Q psy2878 35 TESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDN 85 (181)
Q Consensus 35 ~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~ 85 (181)
.+.+++|+..+|.|| ++|||+|+.++|.|.++++++. ++.+..|+.|.
T Consensus 48 ~l~~~~~~~~~l~~~-~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~ 95 (166)
T d1z6na1 48 RLQRIERRYRLLVAG-EMWCPDCQINLAALDFAQRLQP--NIELAIISKGR 95 (166)
T ss_dssp HHHTCCSCEEEEEEC-CTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHH
T ss_pred HHHHhcCCeEEEEEE-eCcCccHHHHHHHHHHHHHHCC--CCcEEEEECcc
Confidence 356778898899998 9999999999999999998876 45666676653
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=5e-10 Score=73.84 Aligned_cols=86 Identities=8% Similarity=0.060 Sum_probs=66.7
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|.++|.|| ++||++|....|.|.++.+++. ++.++-|..|. +..+++.|+
T Consensus 20 ~~klvvv~F~-a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~-------------------------~~~l~~~~~ 71 (107)
T d1gh2a_ 20 GSRLAVVKFT-MRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ-------------------------CQGTAATNN 71 (107)
T ss_dssp TTSCEEEEEE-CSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------SHHHHHHTT
T ss_pred CCCEEEEEEE-CCCCCCccccchhhhccccccc--ccccccccccc-------------------------chhhhhhcC
Confidence 4678888888 9999999999999999988876 57777776553 345677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+.+.++.+ .+.+++.+.|++.
T Consensus 72 v~-----~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k~ 105 (107)
T d1gh2a_ 72 IS-----ATPTFQFF-RNKVRIDQYQG-----ADAVGLEEKIKQH 105 (107)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEES-----SCHHHHHHHHHHH
T ss_pred ce-----eceEEEEE-ECCEEEEEEeC-----CCHHHHHHHHHHh
Confidence 87 56787777 79999998853 2567777777654
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.03 E-value=4e-10 Score=74.97 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|++||.|| +.||++|+...|.|.++.+++. ++.++-|..|. ...++++|+
T Consensus 25 ~~k~vvv~F~-a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~ 76 (113)
T d1ti3a_ 25 SQKLIVVDFT-ASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE-------------------------LKAVAEEWN 76 (113)
T ss_dssp SSSEEEEEEE-CSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------------------------CHHHHHHHH
T ss_pred CCCEEEEEEE-cCccccchhhhhhhhhhhccCC--CceEEeeeeec-------------------------cccccccCe
Confidence 4688888888 8999999999999998887774 46666655542 345778888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+.+++ ++|+.+.++.+ .+.+++.+.|++..
T Consensus 77 I~-----~~Pt~~~~-k~G~~v~~~~G-----~~~~~l~~~i~k~a 111 (113)
T d1ti3a_ 77 VE-----AMPTFIFL-KDGKLVDKTVG-----ADKDGLPTLVAKHA 111 (113)
T ss_dssp CS-----STTEEEEE-ETTEEEEEEEC-----CCTTHHHHHHHHHH
T ss_pred ec-----ccceEEEE-ECCEEEEEEcC-----CCHHHHHHHHHHHh
Confidence 87 56787777 59999999853 23467777777654
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.3e-10 Score=79.72 Aligned_cols=89 Identities=10% Similarity=0.095 Sum_probs=66.4
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
++++|.|| +.|||.|....+.|.++.++|....+.+.-|..|. +.++++.|++.
T Consensus 37 ~vVll~f~-a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~-------------------------~~~la~~~~V~ 90 (132)
T d2hfda1 37 GVVLLSSD-PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ-------------------------SEAIGDRFGVF 90 (132)
T ss_dssp EEEEECSC-CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHH-------------------------HHHHHHHHTCC
T ss_pred cEEEEEee-CCCChhHHHHHHHHHHHHHHccCCcceeEEEEecC-------------------------CHHHHHhhccC
Confidence 45566666 88999999999999999999987655555555432 24677889987
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
..|+++++ ++|+.+..+.+. .+.+++.+.|+.+..
T Consensus 91 -----~~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~ll~ 125 (132)
T d2hfda1 91 -----RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLVE 125 (132)
T ss_dssp -----SCCEEEEE-ETTEEEEEECCC----SCHHHHHHHHHHHHS
T ss_pred -----cceeEEEE-EcCcEeeeecCC----CCHHHHHHHHHHHhC
Confidence 67788888 799999988532 456777777776643
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.93 E-value=9.2e-10 Score=69.28 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=56.0
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+|..|++|| ++||++|+...|.+.++.+++.. .+.++.+.. |.+.+++++|++
T Consensus 2 ~kv~v~~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~-------------------------d~~~~la~~~~V 54 (85)
T d1fo5a_ 2 SKVKIELFT-SPMCPHCPAAKRVVEEVANEMPD-AVEVEYINV-------------------------MENPQKAMEYGI 54 (85)
T ss_dssp CCEEEEEEE-CCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEES-------------------------SSSCCTTTSTTT
T ss_pred CceEEEEEE-CCCCcChHhhhhhcccccccccc-ccccccccc-------------------------cccccccccCCc
Confidence 577888887 99999999999999887766543 233333332 234567788998
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. ..|+ ++++++|+++ + ..+.+++++.|++.
T Consensus 55 ~-----~~Pt-~~i~~~g~~~----G----~~~~~~l~~~i~~~ 84 (85)
T d1fo5a_ 55 M-----AVPT-IVINGDVEFI----G----APTKEALVEAIKKR 84 (85)
T ss_dssp C-----CSSE-EEETTEEECC----S----SSSSHHHHHHHHHH
T ss_pred e-----EeeE-EEEECCcEEE----C----CCCHHHHHHHHHhc
Confidence 7 5566 4677787643 1 13457788887753
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.90 E-value=5.6e-09 Score=68.00 Aligned_cols=86 Identities=9% Similarity=0.207 Sum_probs=64.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|.|| +.||++|....|.+.++.+++. ++.++-|..|. ..++++.|+
T Consensus 17 ~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d~-------------------------~~~~~~~~~ 68 (103)
T d1syra_ 17 QNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE-------------------------VSEVTEKEN 68 (103)
T ss_dssp HCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------------------------THHHHHHTT
T ss_pred CCCcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeecccc-------------------------Ccceeeeee
Confidence 3578888888 8999999999999999998875 46666666543 235677888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
+. ..|+.+++ ++|+.+.++.+ .+.+++.+.|++.
T Consensus 69 V~-----~~Pt~i~~-k~G~~v~~~~G-----~~~~~l~~~i~k~ 102 (103)
T d1syra_ 69 IT-----SMPTFKVY-KNGSSVDTLLG-----ANDSALKQLIEKY 102 (103)
T ss_dssp CC-----SSSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHTT
T ss_pred ee-----cceEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHhh
Confidence 87 56776666 69999988853 2356777777653
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=4.7e-09 Score=70.20 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=68.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.++.++|.|| +.||+.|....+.+.++.+.+.+.++.+..|..+. +.++++.|+
T Consensus 26 ~~~~~lV~fy-a~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~ 79 (119)
T d2b5ea4 26 SHDLVLAEFF-APWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-------------------------NQDLCMEHN 79 (119)
T ss_dssp TCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT-------------------------CHHHHHHTT
T ss_pred cCCeEEEEEE-CCccCcccccchhhhhhhhhhcccceeeeeeeccc-------------------------hHHHHHHhc
Confidence 3467888877 89999999999999999999887778888887643 346677788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+.+++ ++|+......+. -..+.+++++.|++..
T Consensus 80 v~-----~~Pti~~f-~~g~~~~~~~y~--g~~~~~~l~~fi~k~~ 117 (119)
T d2b5ea4 80 IP-----GFPSLKIF-KNSDVNNSIDYE--GPRTAEAIVQFMIKQS 117 (119)
T ss_dssp CC-----SSSEEEEE-ETTCTTCEEECC--SCCSHHHHHHHHHHHT
T ss_pred cc-----cCCeEEEE-ECCEEeeeEEec--CCCCHHHHHHHHHHhh
Confidence 87 56788888 677654433222 2357899999988653
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=7e-09 Score=71.22 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+|.+||.|| +.||++|....|.|.++.+++.+ .+.++-|..|. +.++++.|+
T Consensus 21 ~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~-------------------------~~~la~~~~ 73 (137)
T d1qgva_ 21 EDRVVVIRFG-HDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITE-------------------------VPDFNKMYE 73 (137)
T ss_dssp SSSEEEEEEE-CTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT-------------------------CCTTTTSSC
T ss_pred CCCEEEEEEE-CCCCccchhcChHHHHHHHHhhc-cceEEEeeccc-------------------------cchhhhhcC
Confidence 3578888898 99999999999999999999974 37777777764 236777888
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCC------CCCCHHHHHHHHHhhc
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLN------VGRNPIETLRILDAIQ 165 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~------~~~~~~~ll~~l~~l~ 165 (181)
+. ..|+.+++ ++|+.+....+..+ .-.+.+++++.++++.
T Consensus 74 I~-----~~PT~~~f-~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~ 119 (137)
T d1qgva_ 74 LY-----DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 119 (137)
T ss_dssp SC-----SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred ee-----eEEEEEEE-eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHH
Confidence 87 56788888 58887765543211 1135666777666553
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.80 E-value=1.2e-08 Score=67.70 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=60.5
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLG 119 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 119 (181)
.+++++|+|| +.|||+|+...|.|.++.+++. ..+..|..+....... ...+++.|+
T Consensus 25 ~~~~~~v~f~-~~~C~~C~~~~p~l~~~~~~~~---~~v~~v~~~~~~~~~~-------------------~~~~~~~~~ 81 (115)
T d1zmaa1 25 KKETATFFIG-RKTCPYCRKFAGTLSGVVAETK---AHIYFINSEEPSQLND-------------------LQAFRSRYG 81 (115)
T ss_dssp TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTCGGGHHH-------------------HHHHHHHHT
T ss_pred cCCCEEEEEc-CCCCccHHHHHHHHHHHHHHhh---hhhhhheeeccccccc-------------------ccccccccc
Confidence 4678888888 8899999999999999887764 3455556554322111 124566788
Q ss_pred CCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy2878 120 IRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRIL 161 (181)
Q Consensus 120 v~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l 161 (181)
+. ..|+.+++. +|+++.+..+. ...+++.+.|
T Consensus 82 V~-----~~PTli~~~-~gk~~~~~~G~----~~~~el~~fl 113 (115)
T d1zmaa1 82 IP-----TVPGFVHIT-DGQINVRCDSS----MSAQEIKDFA 113 (115)
T ss_dssp CC-----SSCEEEEEE-TTEEEEECCTT----CCHHHHHHHH
T ss_pred cc-----cccEEEEEE-CCEEEEEEcCC----CCHHHHHHHH
Confidence 86 567888885 99998877432 3445555544
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.80 E-value=1.3e-08 Score=65.50 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=58.5
Q ss_pred CCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 38 SFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 38 ~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
++.|.+.++.|+ +.|||+|+...|.++++..++. ++.+..|..+. +.+++..
T Consensus 12 ~l~~~~~i~~F~-s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~-------------------------~~~l~~~ 63 (96)
T d1hyua4 12 DIDGDFEFETYY-SLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT-------------------------FQNEITE 63 (96)
T ss_dssp HCCSCEEEEEEE-CTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT-------------------------CHHHHHH
T ss_pred hcCCCeEEEEEE-CCCCcchHHHHHHHHHHHHhCC--ceEEEEEeccc-------------------------chHHHhh
Confidence 345667777777 8899999999999988866543 46666666554 2456677
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHh
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDA 163 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~ 163 (181)
||+. ..|++|+ +|+.++.. . ...+++++.|++
T Consensus 64 ~~I~-----~vPt~~~---ng~~~~~G--~----~~~~~l~~~les 95 (96)
T d1hyua4 64 RNVM-----GVPAVFV---NGKEFGQG--R----MTLTEIVAKVDT 95 (96)
T ss_dssp TTCC-----SSSEEEE---TTEEEEES--C----CCHHHHHHHHCC
T ss_pred cccc-----cccEEEE---CCEEEEec--C----CCHHHHHHHHhC
Confidence 8887 5667655 78877432 1 467888887753
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.77 E-value=2.1e-08 Score=62.98 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=55.1
Q ss_pred EEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCCCCC
Q psy2878 45 IFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIRHET 124 (181)
Q Consensus 45 ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~~ 124 (181)
|..|| +.||++|+...|.+.++.+++.+ ++.++-|..|. +.+++++||+.
T Consensus 5 v~~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~-------------------------~~~l~~~~~V~--- 54 (85)
T d1nhoa_ 5 IEVFT-SPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV-------------------------DREKAIEYGLM--- 54 (85)
T ss_dssp EEEES-CSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT-------------------------CGGGGGGTCSS---
T ss_pred EEEEE-CCCCcchHHHHHHHhhhcccccc-ccccccccccc-------------------------chhhHHhcCce---
Confidence 45566 99999999999999999998864 47777776542 34677889987
Q ss_pred CcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 125 GVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 125 g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
..|+. +++.++ ++.. . .+.+++.+.|++.
T Consensus 55 --~~Pt~-~~~~~~--~~~G--~----~~~~~l~~~i~~~ 83 (85)
T d1nhoa_ 55 --AVPAI-AINGVV--RFVG--A----PSREELFEAINDE 83 (85)
T ss_dssp --CSSEE-EETTTE--EEEC--S----SCCHHHHHHHHHH
T ss_pred --EeCEE-EECCcE--EEEc--C----CCHHHHHHHHHHh
Confidence 56665 455444 3322 1 3567777777653
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=8.4e-09 Score=68.83 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC--cEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN--AILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~--~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
.+|.++|.|| +.||++|+...|.+.++.+++...+ +.++-|..+. +..++..
T Consensus 23 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 76 (120)
T d1meka_ 23 AHKYLLVEFY-APWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------------------------ESDLAQQ 76 (120)
T ss_dssp HCSEEEEEEE-CSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT-------------------------CCSSHHH
T ss_pred cCCcEEEEEE-CCCcCCccccchhhhhhcccccccccceeeecccccc-------------------------chhHHHH
Confidence 3588888888 8999999999999999998887654 3444444431 3567788
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
|++. ..|+++++ ++|+.+....+. .....+++++.|++..
T Consensus 77 ~~i~-----~~Pt~~~~-~~G~~~~~~~~~--g~~~~~~l~~fi~~~~ 116 (120)
T d1meka_ 77 YGVR-----GYPTIKFF-RNGDTASPKEYT--AGREADDIVNWLKKRT 116 (120)
T ss_dssp HTCC-----SSSEEEEE-ESSCSSSCEECC--CCSSHHHHHHHHHTTS
T ss_pred hCCc-----cCCeEEEE-ECCeEeeeEEec--CCCCHHHHHHHHHHhh
Confidence 9987 56788777 455443322111 2357899999998654
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=2.9e-09 Score=72.66 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=61.1
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
+..+...||+++|+|| ++||++|+.+.+.+.+..+.. +.+..+|.|..|.... ..
T Consensus 18 l~~A~~~~Kpvlv~F~-a~wC~~C~~~~~~~~~~~~~~-~~~~~fv~v~vd~~~~-----------------------~~ 72 (135)
T d1sena_ 18 KKEAAASGLPLMVIIH-KSWCGACKALKPKFAESTEIS-ELSHNFVMVNLEDEEE-----------------------PK 72 (135)
T ss_dssp HHHHHHHTCCEEEEEE-CTTCHHHHHHHHHHHTCHHHH-HHHTTSEEEEEEGGGS-----------------------CS
T ss_pred HHHHHHcCCcEEEEEE-ecCCCCceecchhhhhhHHHH-HhcCCcEEEeCCCCcC-----------------------HH
Confidence 3344457899999998 999999999999987765433 3334566666653210 00
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCC------CCCHHHHHHHHHhh
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNV------GRNPIETLRILDAI 164 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~------~~~~~~ll~~l~~l 164 (181)
... +... +...|+.+++|++|+++....+..+. ....+++++.+++.
T Consensus 73 ~~~-~~~~---~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a 125 (135)
T d1sena_ 73 DED-FSPD---GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 125 (135)
T ss_dssp CGG-GCTT---CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred HHH-HHhh---cccceeEEEECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHH
Confidence 000 1100 11257999999999988655322111 23456666665543
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=2e-08 Score=68.81 Aligned_cols=90 Identities=11% Similarity=0.147 Sum_probs=63.1
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+++++|.|| +.||++|+...|.+.++.+.+...+..+..+..|.. ..+++.|++
T Consensus 30 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~-------------------------~~~~~~~~v 83 (140)
T d2b5ea1 30 KKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT-------------------------ENDVRGVVI 83 (140)
T ss_dssp TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG-------------------------GCCCSSCCC
T ss_pred CCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeeecc-------------------------chhcccccc
Confidence 578888888 999999999999999999999876655555555421 123345777
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
. ..|+.+++. +|+......+. -....+++++.|++.
T Consensus 84 ~-----~~Ptl~~f~-~g~~~~~~~y~--G~~t~~~l~~fi~~~ 119 (140)
T d2b5ea1 84 E-----GYPTIVLYP-GGKKSESVVYQ--GSRSLDSLFDFIKEN 119 (140)
T ss_dssp S-----SSSEEEEEC-CTTSCCCCBCC--SCCCHHHHHHHHHHH
T ss_pred c-----cCCeEEEEE-CCEEcceeEeC--CCCCHHHHHHHHHHc
Confidence 6 567988885 66654433221 135788999888764
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.1e-07 Score=64.39 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=62.9
Q ss_pred CCCCCCeEEEEEeeCCCCCCChhHHHHH---HHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 37 SSFPGKWKIFYFYPKDFTFVCPTEISEY---NKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 37 ~~~~gk~~ll~F~~~~~cp~C~~~~~~l---~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
+.-.+|+++|+|+ +.||+.|...-... .++.+.+ +.++.++.|+.++++. ..
T Consensus 38 Ak~~~K~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l-~~~fV~~~v~~~~~e~-----------------------~~ 92 (147)
T d2dlxa1 38 GQMQNKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNII-REHFIFWQVYHDSEEG-----------------------QR 92 (147)
T ss_dssp HHHHTCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHH-HHTEEEEEEESSSHHH-----------------------HH
T ss_pred HHHcCCcEEEEEe-cCCCCchHHHHHhccCCHHHHHHH-hhheeEeeecccchhh-----------------------hh
Confidence 3335799999998 99999998765543 3343334 3468888888877532 23
Q ss_pred HHHHhCCCCCCCcceeeEEEEcC-CCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 114 LIDQLGIRHETGVALRATFIFDP-QNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~-~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+++.|++. ..|++++||| +|+++... +. ...+++++.|++..
T Consensus 93 ~~~~y~v~-----~~Pti~~idp~~ge~v~~~-~~----~~~~~fl~~L~~fl 135 (147)
T d2dlxa1 93 YIQFYKLG-----DFPYVSILDPRTGQKLVEW-HQ----LDVSSFLDQVTGFL 135 (147)
T ss_dssp HHHHHTCC-----SSSEEEEECTTTCCCCEEE-SS----CCHHHHHHHHHHHH
T ss_pred hhhheecC-----ceeEEEEEeCCCCeEeccc-CC----CCHHHHHHHHHHHH
Confidence 45567775 4679999998 58887655 22 35677776666543
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.31 E-value=4.4e-06 Score=55.46 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=64.6
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHH
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER--NAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQ 117 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 117 (181)
+.+.+||.|| +.||.+|.. +.+.++.+++.+. .+.+.-|..+.... +.+.++++.
T Consensus 18 ~~~~~lV~Fy-a~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~--------------------~~n~~l~~~ 74 (122)
T d2c0ga2 18 RFPYSVVKFD-IASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE--------------------LENKALGDR 74 (122)
T ss_dssp TSSEEEEEEE-ESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTT--------------------CTTHHHHHH
T ss_pred cCCcEEEEEE-CCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccccc--------------------ccCHHHHHH
Confidence 3478888888 889999983 8999999888764 34444455443110 124677888
Q ss_pred hCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 118 LGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 118 ~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
|++. ....|+.+++...+...... .....+..+++++.|++.
T Consensus 75 ~~i~---~~~~PTi~~f~~g~~~~~~~--~~~g~rt~~~l~~fv~~~ 116 (122)
T d2c0ga2 75 YKVD---DKNFPSIFLFKGNADEYVQL--PSHVDVTLDNLKAFVSAN 116 (122)
T ss_dssp TTCC---TTSCCEEEEESSSSSSEEEC--CTTSCCCHHHHHHHHHHH
T ss_pred hhcc---cCCCCcEEEEeCCccccccc--ccCCCCCHHHHHHHHHHh
Confidence 8873 11467999997555443333 344457899999998764
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.16 E-value=1.8e-06 Score=56.65 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN 75 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~ 75 (181)
.+|+++|.|| +.||++|....|.+.++.+.+....
T Consensus 19 ~~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~~ 53 (116)
T d2djja1 19 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSE 53 (116)
T ss_dssp TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCEEEEEE-ecccccccccchHHHHHHHHHhccc
Confidence 3578889888 8999999999999999999997643
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.85 E-value=6.4e-05 Score=49.63 Aligned_cols=87 Identities=6% Similarity=0.030 Sum_probs=54.2
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHH-------hcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCch
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFN-------ERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGS 113 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~-------~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 113 (181)
.+.++|.|| +.||..| ..++....+...+. ..++.+..|..+. +.+
T Consensus 28 ~~~~~V~Fy-apwC~~~-~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~-------------------------~~~ 80 (124)
T d1a8ya1 28 YEVLALLYH-EPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK-------------------------DAA 80 (124)
T ss_dssp CSEEEEEEE-CCCCSSH-HHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT-------------------------SHH
T ss_pred CCeEEEEEE-CCCccch-hhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec-------------------------ccc
Confidence 467777777 8999854 44444444433332 3345555555543 346
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ 165 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~ 165 (181)
+++.|++. ..|+.+++. +|+.+. + . -.++.+.+++.|.++.
T Consensus 81 l~~~~~I~-----~yPTi~~f~-~g~~~~-y--~--G~r~~~~l~~fi~~~l 121 (124)
T d1a8ya1 81 VAKKLGLT-----EEDSIYVFK-EDEVIE-Y--D--GEFSADTLVEFLLDVL 121 (124)
T ss_dssp HHHTTTCC-----STTCEEEEE-SSSEEE-C--C--SCCSHHHHHHHHHHHH
T ss_pred hhhccccc-----cCCcEEEec-cCccEE-e--e--CCCCHHHHHHHHHHhc
Confidence 66778887 567888885 677652 2 1 2467888998886553
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.54 E-value=6.1e-05 Score=54.81 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=60.8
Q ss_pred CCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCC
Q psy2878 41 GKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGI 120 (181)
Q Consensus 41 gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 120 (181)
+.+|||.|| +.||+.|....+.|.++..+|. ++.|+-|..+.. . +...|++
T Consensus 120 ~~~Vvvhfy-~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~~--------------~------------~~~~~~i 170 (217)
T d2trcp_ 120 VTTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNT--------------G------------AGDRFSS 170 (217)
T ss_dssp TCEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHH--------------T------------CSTTSCG
T ss_pred CCeEEEEEE-cCCCCChhhhhhhHHHHhhhcc--cceEEEEccccc--------------h------------hHHhCCC
Confidence 457788887 8899999999999999988886 588887754321 0 0112444
Q ss_pred CCCCCcceeeEEEEcCCCcEEEEEeccC---CCCCCHHHHHHHHHhh
Q psy2878 121 RHETGVALRATFIFDPQNIIQHITVNNL---NVGRNPIETLRILDAI 164 (181)
Q Consensus 121 ~~~~g~~~p~~~liD~~g~i~~~~~~~~---~~~~~~~~ll~~l~~l 164 (181)
. ..|+.+++ ++|+++...++.. +.....++|-..|.+.
T Consensus 171 ~-----~lPtl~~y-k~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~ 211 (217)
T d2trcp_ 171 D-----VLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp G-----GCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred C-----CCCeEEEE-ECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence 4 46788888 7999999987422 2233556666666543
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.24 E-value=9.2e-05 Score=47.17 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=48.6
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHhCCC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQLGIR 121 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 121 (181)
-++|+.|+ +.||+.|....+.|.++..+|. ..+ |..|.. .+.++.+.|++.
T Consensus 16 ~p~i~lft-~~~C~~C~~a~~~L~~~~~~~~---~~~--v~vd~~-----------------------~~~~l~~~y~~~ 66 (100)
T d1wjka_ 16 LPVLTLFT-KAPCPLCDEAKEVLQPYKDRFI---LQE--VDITLP-----------------------ENSTWYERYKFD 66 (100)
T ss_dssp CCEEEEEE-CSSCHHHHHHHHHTSTTSSSSE---EEE--EETTSS-----------------------TTHHHHHHSSSS
T ss_pred CCEEEEEE-CCCCCChHHHHHHHHHhhhhcc---eEE--Eecccc-----------------------cCHHHHHHhccc
Confidence 45666665 8999999877777776654443 222 333332 134566667752
Q ss_pred CCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhcc
Q psy2878 122 HETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQT 166 (181)
Q Consensus 122 ~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~ 166 (181)
.|.++ | +|+.+..+ ..+.+++.++|+++..
T Consensus 67 ------VPvl~-i--dg~~~~~g------~~d~~~L~~~L~~l~~ 96 (100)
T d1wjka_ 67 ------IPVFH-L--NGQFLMMH------RVNTSKLEKQLRKLSG 96 (100)
T ss_dssp ------CSEEE-E--SSSEEEES------SCCHHHHHHHHHSSSC
T ss_pred ------CCcee-e--cCceEEeC------CCCHHHHHHHHHHHhc
Confidence 45544 4 57666433 2466788888887653
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00061 Score=47.24 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=54.2
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEec--CCHH---HH------------HHHHHHc
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSS--DNEF---VK------------LAWRREN 96 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~--d~~~---~~------------~~~~~~~ 96 (181)
+....-..+.+|+.|+ -..||+|....+.+.++.+.. .+.++-+.. -.++ .. ..+....
T Consensus 29 i~~G~~~a~~tv~vF~-D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~ 104 (169)
T d1v58a1 29 LLDGKKDAPVIVYVFA-DPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEAS 104 (169)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHT
T ss_pred ceeCCCCCCEEEEEEE-CCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHh
Confidence 4444434456666666 667999999998887765432 355554432 1111 11 1111111
Q ss_pred CCCcccc-eeEE-------EcCCchHHHHhCCCCCCCcceeeEEEEcCCCcEEEEE
Q psy2878 97 SNLYKLN-HWQF-------SDTNGSLIDQLGIRHETGVALRATFIFDPQNIIQHIT 144 (181)
Q Consensus 97 ~~~~~~~-~~~~-------~D~~~~~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~ 144 (181)
....+.. .... .+.+.++++.+|+. .+|+.|+.|++|++....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~-----gTPt~i~~~~~g~~~~~~ 155 (169)
T d1v58a1 105 GGKLKLNVPANVSTEQMKVLSDNEKLMDDLGAN-----VTPAIYYMSKENTLQQAV 155 (169)
T ss_dssp TTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCC-----SSCEEEEEETTTEEEEEE
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhcCCC-----CCCEEEEECCCCCEEEec
Confidence 0000100 1111 11235677788876 578999999999875443
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.0044 Score=42.02 Aligned_cols=45 Identities=11% Similarity=-0.088 Sum_probs=30.0
Q ss_pred eeecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 33 VITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 33 ~~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
.+.+..-.+|.+|+.|. -..||+|+...+.+.++. +.++.++-+.
T Consensus 18 ~iv~g~~~ak~tIv~Fs-D~~CpyC~~~~~~l~~~~----~~~~~~~~~~ 62 (156)
T d1eeja1 18 MIVYKAPQEKHVITVFT-DITCGYCHKLHEQMADYN----ALGITVRYLA 62 (156)
T ss_dssp SEEECCTTCCEEEEEEE-CTTCHHHHHHHTTHHHHH----HTTEEEEEEE
T ss_pred ceeecCCCCCEEEEEEe-CCCCHHHHHHHHHHHHhh----ccCceEEEEe
Confidence 34444445688888876 567999998888877764 3456555443
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.41 E-value=0.0074 Score=39.07 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEE-EEecCCHHHHHHHHHHcCCCcccceeEEEcCCchHHHHh
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILL-GGSSDNEFVKLAWRRENSNLYKLNHWQFSDTNGSLIDQL 118 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi-~Is~d~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 118 (181)
++|+++|.|+ +.||..|.. +..+++.+++.+..-.++ -|.....+. +.+..++..|
T Consensus 20 ~~~~~lV~F~-~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~--------------------~~n~~l~~~~ 76 (122)
T d1g7ea_ 20 KSKFVLVKFD-TQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGD--------------------KLNMELSEKY 76 (122)
T ss_dssp GSSEEEEEEE-CSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTS--------------------CHHHHHHHHH
T ss_pred hCCeEEEEEe-cCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccc--------------------cccHHHHHhh
Confidence 4578888888 778877743 677788888877433332 233221100 0123455555
Q ss_pred CCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhh
Q psy2878 119 GIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAI 164 (181)
Q Consensus 119 gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l 164 (181)
++. .. ..|+.+++- +|.......+ .-.+..+++++.|++-
T Consensus 77 ~~~-I~--~yPTi~~f~-~G~~~~~~~y--~G~rt~~~l~~fi~~~ 116 (122)
T d1g7ea_ 77 KLD-KE--SYPVFYLFR-DGDFENPVPY--SGAVKVGAIQRWLKGQ 116 (122)
T ss_dssp TCS-SS--SCEEEEEEE-SSCCCCCEEE--ESCCCHHHHHHHHHTT
T ss_pred ccc-cc--CCCeEEEEe-cCcccCceec--CCCCCHHHHHHHHHhc
Confidence 531 01 356887774 5543211101 1147889999999764
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.40 E-value=0.0038 Score=42.17 Aligned_cols=44 Identities=9% Similarity=-0.048 Sum_probs=28.7
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEe
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGS 82 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is 82 (181)
+.+..-.+|.+|+.|. -..||+|+...+.+.++.+ .+..++-+-
T Consensus 19 ~i~g~~~ak~~I~~Fs-D~~CPyC~~~~~~l~~l~~----~~~~v~~~~ 62 (150)
T d1t3ba1 19 IVYPAKNEKHVVTVFM-DITCHYCHLLHQQLKEYND----LGITVRYLA 62 (150)
T ss_dssp EEECCTTCSEEEEEEE-CTTCHHHHHHHTTHHHHHH----TTEEEEEEE
T ss_pred eEECCCCCCEEEEEEE-CCCCHHHHHHhHHHHHHhc----cCceEEEEE
Confidence 3334445677777776 5679999988888877753 345555443
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=95.77 E-value=0.034 Score=37.42 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=34.6
Q ss_pred eecCCCCCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcC-cEEEEE
Q psy2878 34 ITESSFPGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERN-AILLGG 81 (181)
Q Consensus 34 ~~l~~~~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~-~~vi~I 81 (181)
+.+.+-.++..|+.|+ ...||+|....+.+.++.+++.+.+ +.++-+
T Consensus 17 ~~~G~~~a~v~I~ef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (172)
T d1z6ma1 17 LHIGESNAPVKMIEFI-NVRCPYCRKWFEESEELLAQSVKSGKVERIIK 64 (172)
T ss_dssp EEESCTTCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CeecCCCCCEEEEEEE-CCCCHhHHHHHHHHhhhhhhhccccceeeeec
Confidence 5566666676677776 6679999999999999999888753 444433
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=95.31 E-value=0.02 Score=38.82 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=27.0
Q ss_pred CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc
Q psy2878 40 PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER 74 (181)
Q Consensus 40 ~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~ 74 (181)
.++++|+.|+ .-.||.|....+.+.++.+++.+.
T Consensus 17 ~~~~~Ivef~-d~~Cp~C~~~~~~~~~l~~~~~~~ 50 (181)
T d1beda_ 17 SSSPVVSEFF-SFYCPHCNTFEPIIAQLKQQLPEG 50 (181)
T ss_dssp CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTT
T ss_pred CCCCEEEEEE-CCCCccchhhhhhhhhHhhhcccc
Confidence 4678888877 667999998888888888887654
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.86 E-value=0.19 Score=35.87 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=30.7
Q ss_pred CeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 42 KWKIFYFYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 42 k~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
+..||--|.+.||..|+.--..|.++.+ +.++..+++.+|
T Consensus 5 ~~aVVElFTSqgCssCPpAd~~L~~L~~---~~~Vi~La~HVd 44 (225)
T d2axoa1 5 VKGVVELFTSQGCASCPPADEALRKMIQ---KGDVVGLSYHVD 44 (225)
T ss_dssp CCCEEEEEECTTCTTCHHHHHHHHHHHH---HTSSEEEEEECS
T ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHhhC---CCCEEEEEeccc
Confidence 3457777779999999988877877743 357888888876
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.55 E-value=0.22 Score=31.84 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=30.1
Q ss_pred hHHHHhCCCCCCCcceeeEEEEcCCCc---EEEEEeccCCCCCCHHHHHHHHHhhccC
Q psy2878 113 SLIDQLGIRHETGVALRATFIFDPQNI---IQHITVNNLNVGRNPIETLRILDAIQTG 167 (181)
Q Consensus 113 ~~~~~~gv~~~~g~~~p~~~liD~~g~---i~~~~~~~~~~~~~~~~ll~~l~~l~~~ 167 (181)
++++.|++. ..|++.|.+ +|+ |++.. .+.+.....++.+|-.+.++
T Consensus 69 ~~~~~~~ve-----r~Ps~~i~~-~g~~~gIrF~G---iP~GhEf~SlilaIl~vs~g 117 (119)
T d1a8la1 69 ELAKRYRID-----RAPATTITQ-DGKDFGVRYFG---LPAGHEFAAFLEDIVDVSRE 117 (119)
T ss_dssp HHHHHTTCC-----SSSEEEEEE-TTBCCSEEEES---CCCTTHHHHHHHHHHHHHHT
T ss_pred hHHHhhccc-----cCceEEEec-CCcccceEEEe---ccCchhHHHHHHHHHHhccC
Confidence 456667775 456766665 443 55544 66677888888888766554
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=93.55 E-value=0.051 Score=31.57 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=25.3
Q ss_pred eeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 49 YPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 49 ~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
|...+||.|.... +.++++|+.+.-+..+...+..++.+
T Consensus 6 Yt~~~C~~C~~ak-------~~L~~~~i~~~~~~i~~~~~~~~~~~ 44 (74)
T d1r7ha_ 6 YTKPACVQCTATK-------KALDRAGLAYNTVDISLDDEARDYVM 44 (74)
T ss_dssp EECTTCHHHHHHH-------HHHHHTTCCCEEEETTTCHHHHHHHH
T ss_pred EeCCCChhHHHHH-------HHHHHcCCceEEEEccCCHHHHHHHH
Confidence 4478999997443 33455688888888776555444444
|
| >d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Phenol hydroxylase, C-terminal domain species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=93.54 E-value=0.74 Score=32.01 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=89.8
Q ss_pred CccCccCCCcEEecccCCCCCCCCCcccceeeeecCCC---CCCeEEEEEeeCCCCCCChhHHHHHHHHHHHHHhc----
Q psy2878 2 KTIGQSLSSYRVIGVKPGFNLPEENNVSAFKVITESSF---PGKWKIFYFYPKDFTFVCPTEISEYNKLVKDFNER---- 74 (181)
Q Consensus 2 l~~G~~~P~f~l~~~~~~~~~~d~~G~~~~~~~~l~~~---~gk~~ll~F~~~~~cp~C~~~~~~l~~l~~~~~~~---- 74 (181)
+.+|..+|...+.- =.+| +++.|.+. .|++-|++|= +. ..+..++..|.++.+.+.+.
T Consensus 17 ~~iG~R~~sa~V~R--------~aDa----~p~~L~~~~~adGrfrI~vFa-Gd--~~~~~~~~~l~~la~~L~s~~s~~ 81 (201)
T d1pn0a2 17 CVVGTRFKSQPVVR--------HSEG----LWMHFGDRLVTDGRFRIIVFA-GK--ATDATQMSRIKKFAAYLDSENSVI 81 (201)
T ss_dssp SCTTSBCCCCEEEE--------TTTT----EEEEGGGGCCCSSCEEEEEEE-EC--TTSHHHHHHHHHHHHHHHSTTSHH
T ss_pred CCCceecCCceEEE--------ecCC----CEeehhccccCCCcEEEEEEe-cC--CCccchhhHHHHHHHHHhcccchh
Confidence 56899999998872 2678 89998653 6898888884 32 33455666677776665421
Q ss_pred ------------CcEEEEEecCCHHHHHHHHHHcCC-C--cccce-eEEEc------CCchHHHHhCCCCCCCcceeeEE
Q psy2878 75 ------------NAILLGGSSDNEFVKLAWRRENSN-L--YKLNH-WQFSD------TNGSLIDQLGIRHETGVALRATF 132 (181)
Q Consensus 75 ------------~~~vi~Is~d~~~~~~~~~~~~~~-~--~~~~~-~~~~D------~~~~~~~~~gv~~~~g~~~p~~~ 132 (181)
-++++.|...+..+.. + ...-. . ....+ -++.| +.+.....||+.... -.++
T Consensus 82 ~r~t~~~~d~~~~i~~~~V~~~~~~~ie-~-~dlP~~~~~~~~~~~~~~~d~~~~~~~~~~ay~~~GId~~~----G~vV 155 (201)
T d1pn0a2 82 SRYTPKGADRNSRIDVITIHSCHRDDIE-M-HDFPAPALHPKWQYDFIYADCDSWHHPHPKSYQAWGVDETK----GAVV 155 (201)
T ss_dssp HHHSBTTSCTTSSEEEEEEESSCTTSCC-G-GGSCTTTTSCTTCCSSEEECSCCSSSCCCCHHHHHTBCTTT----CEEE
T ss_pred hhccCCCCCCCCcEEEEEEecCCCCccc-c-ccccccccCCcceEEeeecccccccCCcccHHHHhCCCCCc----eEEE
Confidence 2688888765422111 0 00000 0 01111 12222 457889999986322 3688
Q ss_pred EEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhc------cCCccccCCCC
Q psy2878 133 IFDPQNIIQHITVNNLNVGRNPIETLRILDAIQ------TGKLCACNRTL 176 (181)
Q Consensus 133 liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~------~~~~~~~~~~~ 176 (181)
|+-|||.|-... .. .+.+.|-+-.+... .+..+++.|+.
T Consensus 156 VVRPDgyVg~v~--~L---dd~~~L~~yF~~fl~~~~~~~~~~~~~~~~~ 200 (201)
T d1pn0a2 156 VVRPDGYTSLVT--DL---EGTAEIDRYFSGILVEPKEKSGAQTEADWTK 200 (201)
T ss_dssp EECTTSBEEEEE--CT---TTHHHHHHHHHTTBCCCSSBCCSCCCCCTTC
T ss_pred EECCCcceEEEE--cc---ccHHHHHHHHHHhhhCccccccccccccccc
Confidence 999999998776 22 35566666555443 23567788865
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.061 Score=31.44 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=25.2
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLAWRR 94 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~~~~ 94 (181)
.|...+||.|.... +.+.++|+.+.-+..+...+..++.+
T Consensus 5 iYs~~~C~~C~~ak-------~~L~~~~i~y~~~~i~~~~~~~~~~~ 44 (76)
T d1h75a_ 5 IYTRNDCVQCHATK-------RAMENRGFDFEMINVDRVPEAAEALR 44 (76)
T ss_dssp EEECTTCHHHHHHH-------HHHHHTTCCCEEEETTTCHHHHHHHH
T ss_pred EEeCCCCccHHHHH-------HHHHhcCceeEEEeecCCHHHHHHHH
Confidence 44588999997443 33455688777777766444444443
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=91.84 E-value=0.076 Score=31.44 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=21.9
Q ss_pred EeeCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 48 FYPKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 48 F~~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
.|...+||.|...- +.+++.|+.+.-+..+.....++
T Consensus 5 iys~~~Cp~C~~ak-------~~L~~~~i~y~~~di~~~~~~~~ 41 (82)
T d1fova_ 5 IYTKETCPYCHRAK-------ALLSSKGVSFQELPIDGNAAKRE 41 (82)
T ss_dssp EEECSSCHHHHHHH-------HHHHHHTCCCEEEECTTCSHHHH
T ss_pred EEeCCCCHhHHHHH-------HHHHHcCCCeEEEeccchHHHHH
Confidence 34488999997433 23444577766666655434333
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=90.00 E-value=0.091 Score=31.36 Aligned_cols=33 Identities=9% Similarity=-0.088 Sum_probs=22.9
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecC
Q psy2878 50 PKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSD 84 (181)
Q Consensus 50 ~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d 84 (181)
..++||.|...-.-|.++..++. ++.+.-+..+
T Consensus 7 sk~~Cp~C~~aK~ll~~~~~~~~--~i~~~~~~~~ 39 (85)
T d1egoa_ 7 GRSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR 39 (85)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred eCCCCHhHHHHHHHHHHcCCCCC--CceEEEEecC
Confidence 47899999877766777666555 5666665544
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=89.65 E-value=0.13 Score=29.74 Aligned_cols=35 Identities=6% Similarity=-0.008 Sum_probs=20.6
Q ss_pred eCCCCCCChhHHHHHHHHHHHHHhcCcEEEEEecCCHHHHHH
Q psy2878 50 PKDFTFVCPTEISEYNKLVKDFNERNAILLGGSSDNEFVKLA 91 (181)
Q Consensus 50 ~~~~cp~C~~~~~~l~~l~~~~~~~~~~vi~Is~d~~~~~~~ 91 (181)
...+||.|.....- +.+.|+.+.-+..+.....+.
T Consensus 11 s~~~C~~C~~ak~l-------L~~~~i~~~~~~v~~~~~~~~ 45 (74)
T d1nm3a1 11 TKPGCPFCAKAKQL-------LHDKGLSFEEIILGHDATIVS 45 (74)
T ss_dssp ECSSCHHHHHHHHH-------HHHHTCCCEEEETTTTCCHHH
T ss_pred ECCCCHHHHHHHHH-------HHHcCCCeEEEEccCcHHHHH
Confidence 37889999755433 333467666666655433333
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=80.85 E-value=3.4 Score=25.97 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=32.4
Q ss_pred HHHHhCCCCCCCcceeeEEEEcCCCcEEEEEeccCCCCCCHHHHHHHHHhhccCCc
Q psy2878 114 LIDQLGIRHETGVALRATFIFDPQNIIQHITVNNLNVGRNPIETLRILDAIQTGKL 169 (181)
Q Consensus 114 ~~~~~gv~~~~g~~~p~~~liD~~g~i~~~~~~~~~~~~~~~~ll~~l~~l~~~~~ 169 (181)
..+.||+. +-..|...+++.++...+.+. ....-+.+.+.+.++....|+.
T Consensus 68 ~l~~~gl~---~~~~P~~~i~~~~~~~~~~~~--~~~~i~~~~i~~Fi~d~~~Gkl 118 (133)
T d2djka1 68 HAGNLNLK---TDKFPAFAIQEVAKNQKFPFD--QEKEITFEAIKAFVDDFVAGKI 118 (133)
T ss_dssp GTTTTTCC---SSSSSEEEEECTTTCCBCCCC--SSSCCCHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCC---cccCCcEEEEEcCCCceecCC--ccccCCHHHHHHHHHHHHcCCC
Confidence 33456664 123578889988888766662 2333467788888887776643
|