Psyllid ID: psy2898

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--

MFSISISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFFI

ccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccEEEccccccccEEccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHcccc

ccccccccccccEEEHHcccccHHHHHHHHHHHHHHcccccccEEEEEEccccEEccccccHHHcccccccccccEEEEccccEEEEcccccEEEEEEEEHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccHHHHHHEEEEEEccccEEEEEEEEccccccccccccccccccccEEEHHHccccccHHHHHHHHHHHccc

mfsisissTYSNLQIIQRGLEPYIVSFNAMLLFnsnrtnytidqlwfvehfpvytlglksNFSHILISkklnnipiirtdrggevtyhgpgQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYninckrkknapgvyiangpfsgaKIASIGLKISAKGYVYHGVSINvsmdlepfnninpcgypglVIVDMKKLGINTTISKVQHLFIKNFFI

mfsisissTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTdrggevtyhgpGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFFI

********TYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF*

*************QIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFFI

**********SNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFFI

*******STYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFFI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		222	2.2.26 [Sep-21-2011]
A4G9C5		216	Octanoyltransferase OS=He	yes	N/A	0.945	0.972	0.525	1e-65
A6T344		216	Octanoyltransferase OS=Ja	yes	N/A	0.878	0.902	0.547	3e-64
Q3JWL3		254	Octanoyltransferase OS=Bu	yes	N/A	0.878	0.767	0.482	2e-54
Q63XX6		225	Octanoyltransferase OS=Bu	no	N/A	0.878	0.866	0.482	2e-54
Q62N15		225	Octanoyltransferase OS=Bu	no	N/A	0.878	0.866	0.482	2e-54
A3N575		252	Octanoyltransferase OS=Bu	yes	N/A	0.878	0.773	0.482	2e-54
A3NQX5		246	Octanoyltransferase OS=Bu	yes	N/A	0.878	0.792	0.482	2e-54
A1V017		249	Octanoyltransferase OS=Bu	yes	N/A	0.878	0.783	0.482	2e-54
A2S5Y8		249	Octanoyltransferase OS=Bu	yes	N/A	0.878	0.783	0.482	2e-54
A3MR18		249	Octanoyltransferase OS=Bu	yes	N/A	0.878	0.783	0.482	2e-54

>sp\|A4G9C5\|LIPB_HERAR Octanoyltransferase OS=Herminiimonas arsenicoxydans GN=lipB PE=3 SV=1	Back alignment and function desciption

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 157/215 (73%), Gaps = 5/215 (2%)

Query: 6   ISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHI 65
           +S++ S L I QRG E Y +++ AM  F   RT  T D+LW VEH PV+TLGL ++ +H+
Sbjct: 1   MSASTSPL-IRQRGRESYEITYAAMRAFTDARTAQTADELWIVEHPPVFTLGLAADPTHV 59

Query: 66  LISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVI 125
           L     ++IP+++TDRGGEVTYHGPGQ +IYLL+DLRR ++D  +I+ ++LV  IE+AVI
Sbjct: 60  L---DAHDIPVVQTDRGGEVTYHGPGQVVIYLLLDLRRNHAD-ARIFARELVNKIEQAVI 115

Query: 126 LTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFN 185
            T++ YN+ C+RK  APG+Y+++GP  GAKIA++GLKI   G  YHGVS+NV+MDL PF+
Sbjct: 116 DTLAAYNLACERKAGAPGIYLSDGPLQGAKIAALGLKIRGNGCTYHGVSLNVAMDLTPFS 175

Query: 186 NINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220
            INPCGY GLV +DM+ LG  TT++ VQ    +  
Sbjct: 176 WINPCGYEGLVTIDMQSLGAQTTLTAVQDTLAEKL 210

Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
Herminiimonas arsenicoxydans (taxid: 204773)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 8EC: 1

>sp\|A6T344\|LIPB_JANMA Octanoyltransferase OS=Janthinobacterium sp. (strain Marseille) GN=lipB PE=3 SV=1	Back alignment and function description

>sp\|Q3JWL3\|LIPB_BURP1 Octanoyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=lipB PE=3 SV=2	Back alignment and function description

>sp\|Q63XX6\|LIPB_BURPS Octanoyltransferase OS=Burkholderia pseudomallei (strain K96243) GN=lipB PE=3 SV=1	Back alignment and function description

>sp\|Q62N15\|LIPB_BURMA Octanoyltransferase OS=Burkholderia mallei (strain ATCC 23344) GN=lipB PE=3 SV=2	Back alignment and function description

>sp\|A3N575\|LIPB_BURP6 Octanoyltransferase OS=Burkholderia pseudomallei (strain 668) GN=lipB PE=3 SV=1	Back alignment and function description

>sp\|A3NQX5\|LIPB_BURP0 Octanoyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=lipB PE=3 SV=1	Back alignment and function description

>sp\|A1V017\|LIPB_BURMS Octanoyltransferase OS=Burkholderia mallei (strain SAVP1) GN=lipB PE=3 SV=1	Back alignment and function description

>sp\|A2S5Y8\|LIPB_BURM9 Octanoyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=lipB PE=3 SV=1	Back alignment and function description

>sp\|A3MR18\|LIPB_BURM7 Octanoyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=lipB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		222
134096158		216	lipoate-protein ligase B [Herminiimonas	0.945	0.972	0.525	5e-64
300314049		230	lipoate-protein ligase B protein [Herbas	0.914	0.882	0.543	2e-62
152981060		216	lipoate-protein ligase B [Janthinobacter	0.878	0.902	0.547	2e-62
409408561		230	lipoate-protein ligase B protein [Herbas	0.914	0.882	0.538	8e-62
399021272		218	lipoate-protein ligase B [Herbaspirillum	0.914	0.931	0.521	4e-61
398836775		229	lipoate-protein ligase B [Herbaspirillum	0.914	0.886	0.526	2e-60
340789372		241	octanoate-[acyl-carrier-protein]-protein	0.914	0.842	0.559	1e-59
329905290		247	Octanoate-(acyl-carrier-protein)-protein	0.878	0.789	0.522	9e-58
427400044		231	octanoyltransferase [Massilia timonae CC	0.950	0.913	0.476	4e-55
395760508		238	lipoate-protein ligase B [Janthinobacter	0.972	0.907	0.463	3e-54

>gi|134096158|ref|YP_001101233.1| lipoate-protein ligase B [Herminiimonas arsenicoxydans] gi|172044170|sp|A4G9C5.1|LIPB_HERAR RecName: Full=Octanoyltransferase; AltName: Full=Lipoate-protein ligase B; AltName: Full=Lipoyl/octanoyl transferase; AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase gi|133740061|emb|CAL63112.1| Lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase (Lipoate-protein ligase B) [Herminiimonas arsenicoxydans]

Back alignment and taxonomy information

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 157/215 (73%), Gaps = 5/215 (2%)

Query: 6   ISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHI 65
           +S++ S L I QRG E Y +++ AM  F   RT  T D+LW VEH PV+TLGL ++ +H+
Sbjct: 1   MSASTSPL-IRQRGRESYEITYAAMRAFTDARTAQTADELWIVEHPPVFTLGLAADPTHV 59

Query: 66  LISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVI 125
           L     ++IP+++TDRGGEVTYHGPGQ +IYLL+DLRR ++D  +I+ ++LV  IE+AVI
Sbjct: 60  L---DAHDIPVVQTDRGGEVTYHGPGQVVIYLLLDLRRNHAD-ARIFARELVNKIEQAVI 115

Query: 126 LTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFN 185
            T++ YN+ C+RK  APG+Y+++GP  GAKIA++GLKI   G  YHGVS+NV+MDL PF+
Sbjct: 116 DTLAAYNLACERKAGAPGIYLSDGPLQGAKIAALGLKIRGNGCTYHGVSLNVAMDLTPFS 175

Query: 186 NINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNF 220
            INPCGY GLV +DM+ LG  TT++ VQ    +  
Sbjct: 176 WINPCGYEGLVTIDMQSLGAQTTLTAVQDTLAEKL 210

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|300314049\|ref\|YP_003778141.1\| lipoate-protein ligase B protein [Herbaspirillum seropedicae SmR1] gi\|300076834\|gb\|ADJ66233.1\| lipoate-protein ligase B protein [Herbaspirillum seropedicae SmR1]	Back alignment and taxonomy information

>gi|152981060|ref|YP_001354941.1| lipoate-protein ligase B [Janthinobacterium sp. Marseille] gi|179307973|sp|A6T344.1|LIPB_JANMA RecName: Full=Octanoyltransferase; AltName: Full=Lipoate-protein ligase B; AltName: Full=Lipoyl/octanoyl transferase; AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase gi|151281137|gb|ABR89547.1| lipoate-protein ligase B [Janthinobacterium sp. Marseille]

Back alignment and taxonomy information

>gi\|409408561\|ref\|ZP_11256996.1\| lipoate-protein ligase B protein [Herbaspirillum sp. GW103] gi\|386431883\|gb\|EIJ44711.1\| lipoate-protein ligase B protein [Herbaspirillum sp. GW103]	Back alignment and taxonomy information

>gi\|399021272\|ref\|ZP_10723386.1\| lipoate-protein ligase B [Herbaspirillum sp. CF444] gi\|398092613\|gb\|EJL83022.1\| lipoate-protein ligase B [Herbaspirillum sp. CF444]	Back alignment and taxonomy information

>gi\|398836775\|ref\|ZP_10594103.1\| lipoate-protein ligase B [Herbaspirillum sp. YR522] gi\|398210841\|gb\|EJM97475.1\| lipoate-protein ligase B [Herbaspirillum sp. YR522]	Back alignment and taxonomy information

>gi\|340789372\|ref\|YP_004754837.1\| octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase [Collimonas fungivorans Ter331] gi\|340554639\|gb\|AEK64014.1\| Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase [Collimonas fungivorans Ter331]	Back alignment and taxonomy information

>gi\|329905290\|ref\|ZP_08274084.1\| Octanoate-(acyl-carrier-protein)-protein-N-octanoyltransferase [Oxalobacteraceae bacterium IMCC9480] gi\|327547637\|gb\|EGF32429.1\| Octanoate-(acyl-carrier-protein)-protein-N-octanoyltransferase [Oxalobacteraceae bacterium IMCC9480]	Back alignment and taxonomy information

>gi\|427400044\|ref\|ZP_18891282.1\| octanoyltransferase [Massilia timonae CCUG 45783] gi\|425720784\|gb\|EKU83699.1\| octanoyltransferase [Massilia timonae CCUG 45783]	Back alignment and taxonomy information

>gi\|395760508\|ref\|ZP_10441177.1\| lipoate-protein ligase B [Janthinobacterium lividum PAMC 25724]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		222
TIGR_CMR\|CBU_1265		242	CBU_1265 "lipoate-protein liga	0.842	0.772	0.419	1.1e-37
TIGR_CMR\|SO_1162		219	SO_1162 "lipoate-protein ligas	0.833	0.844	0.427	2.4e-37
UNIPROTKB\|P60720		213	lipB [Escherichia coli K-12 (t	0.851	0.887	0.389	6.3e-37
UNIPROTKB\|Q9KTF8		216	lipB "Octanoyltransferase" [Vi	0.864	0.888	0.399	1.3e-36
TIGR_CMR\|VC_0944		216	VC_0944 "lipoate-protein ligas	0.864	0.888	0.399	1.3e-36
TIGR_CMR\|CPS_1710		235	CPS_1710 "lipoate-protein liga	0.887	0.838	0.407	7.2e-36
TIGR_CMR\|APH_0243		208	APH_0243 "lipoate-protein liga	0.887	0.947	0.338	8.2e-28
TIGR_CMR\|ECH_0371		214	ECH_0371 "lipoate-protein liga	0.752	0.780	0.340	2.9e-25
TIGR_CMR\|NSE_0100		209	NSE_0100 "lipoate-protein liga	0.846	0.899	0.331	1.4e-23
TAIR\|locus:2126609		278	AT4G31050 [Arabidopsis thalian	0.707	0.564	0.372	3.8e-23

TIGR_CMR\|CBU_1265 CBU_1265 "lipoate-protein ligase B" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 86/205 (41%), Positives = 127/205 (61%)

Query:    20 LEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRT 79
             L PY   + AM  F + R + T D++WF+EH PV+T GL     H+L S    NIP+IRT
Sbjct:    12 LIPYQPLWEAMQTFTARRQSQTTDEIWFLEHEPVFTQGLAGKPEHVLNS---GNIPLIRT 68

Query:    80 DRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKK 139
             DRGG+VTYHGPGQ ++YLL+DL R     + +  +  V  IE  V  ++ ++ I  + K+
Sbjct:    69 DRGGQVTYHGPGQLMMYLLLDLNR-----LGLSTRTFVRTIENTVAESLQEWGIPAQGKE 123

Query:   140 NAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVD 199
              APGVY+ +      KI SIGL++  KG+ YHG+++NV+MDL PF+ INPCG+ GL +  
Sbjct:   124 TAPGVYVDD-----KKICSIGLRVR-KGFSYHGLALNVAMDLTPFSCINPCGFKGLTMTQ 177

Query:   200 MKK----LGINTTISKVQHLFIKNF 220
             ++     + ++     +  LF+KNF
Sbjct:   178 IQDYVNPIEMDAVKRTIIPLFLKNF 202

GO:0009107 "lipoate biosynthetic process" evidence=ISS

TIGR_CMR\|SO_1162 SO_1162 "lipoate-protein ligase B" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|P60720 lipB [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KTF8 lipB "Octanoyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_0944 VC_0944 "lipoate-protein ligase B" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_1710 CPS_1710 "lipoate-protein ligase B" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|APH_0243 APH_0243 "lipoate-protein ligase B" [Anaplasma phagocytophilum HZ (taxid:212042)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_0371 ECH_0371 "lipoate-protein ligase B" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

TIGR_CMR\|NSE_0100 NSE_0100 "lipoate-protein ligase B" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]	Back alignment and assigned GO terms

TAIR\|locus:2126609 AT4G31050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2S5Y8	LIPB_BURM9	2, ., 3, ., 1, ., 1, 8, 1	0.4827	0.8783	0.7831	yes	N/A
B2UE02	LIPB_RALPJ	2, ., 3, ., 1, ., 1, 8, 1	0.4791	0.8243	0.7991	yes	N/A
Q2Y7I8	LIPB_NITMU	2, ., 3, ., 1, ., 1, 8, 1	0.4285	0.8513	0.8790	yes	N/A
Q66DF4	LIPB_YERPS	2, ., 3, ., 1, ., 1, 8, 1	0.4117	0.8558	0.8154	yes	N/A
A4TP08	LIPB_YERPP	2, ., 3, ., 1, ., 1, 8, 1	0.4117	0.8558	0.8154	yes	N/A
B2JC45	LIPB_BURP8	2, ., 3, ., 1, ., 1, 8, 1	0.4519	0.8783	0.7647	yes	N/A
B2SWY4	LIPB_BURPP	2, ., 3, ., 1, ., 1, 8, 1	0.4517	0.9549	0.8796	yes	N/A
A3NQX5	LIPB_BURP0	2, ., 3, ., 1, ., 1, 8, 1	0.4827	0.8783	0.7926	yes	N/A
Q82UJ6	LIPB_NITEU	2, ., 3, ., 1, ., 1, 8, 1	0.4439	0.8198	0.8921	yes	N/A
Q39CJ1	LIPB_BURS3	2, ., 3, ., 1, ., 1, 8, 1	0.4705	0.8828	0.7777	yes	N/A
A0KAV9	LIPB_BURCH	2, ., 3, ., 1, ., 1, 8, 1	0.44	0.9504	0.8406	yes	N/A
C1D5T4	LIPB_LARHH	2, ., 3, ., 1, ., 1, 8, 1	0.4519	0.8738	0.9371	yes	N/A
Q4UYT3	LIPB_XANC8	2, ., 3, ., 1, ., 1, 8, 1	0.4106	0.8693	0.8318	yes	N/A
A1KU21	LIPB_NEIMF	2, ., 3, ., 1, ., 1, 8, 1	0.4590	0.7612	0.8164	yes	N/A
Q477G6	LIPB_CUPPJ	2, ., 3, ., 1, ., 1, 8, 1	0.4947	0.8288	0.7272	yes	N/A
Q3JWL3	LIPB_BURP1	2, ., 3, ., 1, ., 1, 8, 1	0.4827	0.8783	0.7677	yes	N/A
Q3J7W3	LIPB_NITOC	2, ., 3, ., 1, ., 1, 8, 1	0.4460	0.8558	0.8482	yes	N/A
Q8Y2L2	LIPB_RALSO	2, ., 3, ., 1, ., 1, 8, 1	0.4791	0.8243	0.7991	yes	N/A
B1XSA5	LIPB_POLNS	2, ., 3, ., 1, ., 1, 8, 1	0.4354	0.8603	0.8925	yes	N/A
A9AEG7	LIPB_BURM1	2, ., 3, ., 1, ., 1, 8, 1	0.4705	0.8828	0.7903	yes	N/A
Q3SM28	LIPB_THIDA	2, ., 3, ., 1, ., 1, 8, 1	0.4146	0.8603	0.8761	yes	N/A
B1JZ91	LIPB_BURCC	2, ., 3, ., 1, ., 1, 8, 1	0.4414	0.9504	0.8508	yes	N/A
A3MR18	LIPB_BURM7	2, ., 3, ., 1, ., 1, 8, 1	0.4827	0.8783	0.7831	yes	N/A
A4JI72	LIPB_BURVG	2, ., 3, ., 1, ., 1, 8, 1	0.4545	0.9054	0.8007	yes	N/A
Q146F2	LIPB_BURXL	2, ., 3, ., 1, ., 1, 8, 1	0.4553	0.9369	0.8630	yes	N/A
Q60CJ7	LIPB_METCA	2, ., 3, ., 1, ., 1, 8, 1	0.4019	0.8558	0.9178	yes	N/A
B3PKN9	LIPB_CELJU	2, ., 3, ., 1, ., 1, 8, 1	0.4354	0.8738	0.9023	yes	N/A
Q8ZDG9	LIPB_YERPE	2, ., 3, ., 1, ., 1, 8, 1	0.4117	0.8558	0.8154	yes	N/A
Q8P589	LIPB_XANCP	2, ., 3, ., 1, ., 1, 8, 1	0.4106	0.8693	0.8318	yes	N/A
A1V017	LIPB_BURMS	2, ., 3, ., 1, ., 1, 8, 1	0.4827	0.8783	0.7831	yes	N/A
Q3BXQ4	LIPB_XANC5	2, ., 3, ., 1, ., 1, 8, 1	0.4055	0.9054	0.8663	yes	N/A
B1YNM7	LIPB_BURA4	2, ., 3, ., 1, ., 1, 8, 1	0.4656	0.8828	0.7808	yes	N/A
B1JGB6	LIPB_YERPY	2, ., 3, ., 1, ., 1, 8, 1	0.4117	0.8558	0.8154	yes	N/A
Q0BBH9	LIPB_BURCM	2, ., 3, ., 1, ., 1, 8, 1	0.4656	0.8828	0.7808	yes	N/A
A3N575	LIPB_BURP6	2, ., 3, ., 1, ., 1, 8, 1	0.4827	0.8783	0.7738	yes	N/A
Q1CKR5	LIPB_YERPN	2, ., 3, ., 1, ., 1, 8, 1	0.4117	0.8558	0.8154	yes	N/A
B0RNP8	LIPB_XANCB	2, ., 3, ., 1, ., 1, 8, 1	0.4106	0.8693	0.8318	yes	N/A
A4SJV7	LIPB_AERS4	2, ., 3, ., 1, ., 1, 8, 1	0.4019	0.9009	0.8888	yes	N/A
Q1C508	LIPB_YERPA	2, ., 3, ., 1, ., 1, 8, 1	0.4117	0.8558	0.8154	yes	N/A
Q1BT81	LIPB_BURCA	2, ., 3, ., 1, ., 1, 8, 1	0.44	0.9504	0.8406	yes	N/A
A4G9C5	LIPB_HERAR	2, ., 3, ., 1, ., 1, 8, 1	0.5255	0.9459	0.9722	yes	N/A
Q8PPL9	LIPB_XANAC	2, ., 3, ., 1, ., 1, 8, 1	0.4055	0.9054	0.8663	yes	N/A
B2K875	LIPB_YERPB	2, ., 3, ., 1, ., 1, 8, 1	0.4117	0.8558	0.8154	yes	N/A
A6T344	LIPB_JANMA	2, ., 3, ., 1, ., 1, 8, 1	0.5477	0.8783	0.9027	yes	N/A
Q2T1K6	LIPB_BURTA	2, ., 3, ., 1, ., 1, 8, 1	0.4657	0.9414	0.8196	yes	N/A
A4T0B0	LIPB_POLSQ	2, ., 3, ., 1, ., 1, 8, 1	0.4057	0.8738	0.9065	yes	N/A
Q0AI04	LIPB_NITEC	2, ., 3, ., 1, ., 1, 8, 1	0.4272	0.8873	0.8755	yes	N/A
Q0KFE7	LIPB_CUPNH	2, ., 3, ., 1, ., 1, 8, 1	0.4946	0.8108	0.6716	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.963
3rd Layer	2.3.1.181	0.946

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		222
PRK14343		235	PRK14343, PRK14343, lipoate-protein ligase B; Prov	1e-94
PRK14342		213	PRK14342, PRK14342, lipoate-protein ligase B; Prov	2e-82
COG0321		221	COG0321, LipB, Lipoate-protein ligase B [Coenzyme	1e-72
PRK14346		230	PRK14346, PRK14346, lipoate-protein ligase B; Prov	2e-62
PRK14349		220	PRK14349, PRK14349, lipoate-protein ligase B; Prov	1e-59
TIGR00214		184	TIGR00214, lipB, lipoate-protein ligase B	5e-51
PRK14341		213	PRK14341, PRK14341, lipoate-protein ligase B; Prov	9e-41
PRK14344		223	PRK14344, PRK14344, lipoate-protein ligase B; Prov	5e-37
PRK14345		234	PRK14345, PRK14345, lipoate-protein ligase B; Prov	5e-32
PRK14347		209	PRK14347, PRK14347, lipoate-protein ligase B; Prov	1e-27
PRK14348		221	PRK14348, PRK14348, lipoate-protein ligase B; Prov	7e-24
pfam03099		124	pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote	8e-13

>gnl\|CDD\|237682 PRK14343, PRK14343, lipoate-protein ligase B; Provisional	Back alignment and domain information

 Score =  275 bits (706), Expect = 1e-94
 Identities = 101/204 (49%), Positives = 137/204 (67%), Gaps = 8/204 (3%)

Query: 13  LQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLN 72
           + +  RG EPY   F+AM  F   RT  T D++W VEH PVYTLG   + +H+L++   +
Sbjct: 15  VTVRWRGREPYEACFDAMRAFTDARTADTPDEIWLVEHPPVYTLGQAGDPAHLLVAD--S 72

Query: 73  NIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYN 132
            IP+++ DRGG++TYHGPGQ + YLL+DLRRR     K+ +++LV  IE+AVI T++ YN
Sbjct: 73  GIPLVKVDRGGQITYHGPGQVVAYLLLDLRRR-----KLMVRELVTRIEQAVIDTLAAYN 127

Query: 133 INCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPFNNINPCGY 192
           +  +RK  APG+Y+A+GP  GAKIA++GLKI   G  YHG+S+NV MDL PF  INPCGY
Sbjct: 128 LASERKAGAPGIYVASGPHQGAKIAALGLKIR-NGCSYHGLSLNVKMDLRPFLAINPCGY 186

Query: 193 PGLVIVDMKKLGINTTISKVQHLF 216
            GL  VDM  LG+    + V    
Sbjct: 187 AGLETVDMASLGVAADWADVAQTL 210

Length = 235

>gnl\|CDD\|237681 PRK14342, PRK14342, lipoate-protein ligase B; Provisional	Back alignment and domain information

>gnl\|CDD\|223398 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|237684 PRK14346, PRK14346, lipoate-protein ligase B; Provisional	Back alignment and domain information

>gnl\|CDD\|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional	Back alignment and domain information

>gnl\|CDD\|232877 TIGR00214, lipB, lipoate-protein ligase B	Back alignment and domain information

>gnl\|CDD\|237680 PRK14341, PRK14341, lipoate-protein ligase B; Provisional	Back alignment and domain information

>gnl\|CDD\|237683 PRK14344, PRK14344, lipoate-protein ligase B; Provisional	Back alignment and domain information

>gnl\|CDD\|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional	Back alignment and domain information

>gnl\|CDD\|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional	Back alignment and domain information

>gnl\|CDD\|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional	Back alignment and domain information

>gnl\|CDD\|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		222
PRK14342		213	lipoate-protein ligase B; Provisional	100.0
COG0321		221	LipB Lipoate-protein ligase B [Coenzyme metabolism	100.0
PRK14343		235	lipoate-protein ligase B; Provisional	100.0
PRK14346		230	lipoate-protein ligase B; Provisional	100.0
PRK14341		213	lipoate-protein ligase B; Provisional	100.0
PRK14344		223	lipoate-protein ligase B; Provisional	100.0
PRK14347		209	lipoate-protein ligase B; Provisional	100.0
PRK14348		221	lipoate-protein ligase B; Provisional	100.0
PRK14349		220	lipoate-protein ligase B; Provisional	100.0
PRK14345		234	lipoate-protein ligase B; Provisional	100.0
TIGR00214		184	lipB lipoate-protein ligase B. Involved in lipoate	100.0
KOG0325\|consensus		226		100.0
TIGR00545		324	lipoyltrans lipoyltransferase and lipoate-protein	99.79
PRK03822		338	lplA lipoate-protein ligase A; Provisional	99.78
PRK14061		562	unknown domain/lipoate-protein ligase A fusion pro	99.72
COG0095		248	LplA Lipoate-protein ligase A [Coenzyme metabolism	99.69
PRK08330		236	biotin--protein ligase; Provisional	99.51
PF03099		125	BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f	99.45
KOG3159\|consensus		336		98.98
PRK05935		190	biotin--protein ligase; Provisional	98.51
COG0340		238	BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz	98.25
TIGR00121		237	birA_ligase birA, biotin-[acetyl-CoA-carboxylase]	98.18
PRK11886		319	bifunctional biotin--[acetyl-CoA-carboxylase] synt	97.99
PTZ00276		245	biotin/lipoate protein ligase; Provisional	97.93
PTZ00275		285	biotin-acetyl-CoA-carboxylase ligase; Provisional	97.91
PRK08477		211	biotin--protein ligase; Provisional	97.73
PRK06955		300	biotin--protein ligase; Provisional	97.55
PRK13325		592	bifunctional biotin--[acetyl-CoA-carboxylase] liga	97.09
KOG0325\|consensus		226		93.87
PF04017		183	DUF366: Domain of unknown function (DUF366); Inter	90.42
COG2029		189	Uncharacterized conserved protein [Function unknow	87.2

>PRK14342 lipoate-protein ligase B; Provisional	Back alignment and domain information

Probab=100.00  E-value=5.2e-73  Score=484.24  Aligned_cols=197  Identities=45%  Similarity=0.854  Sum_probs=188.7

Q ss_pred             ceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCceeeCC
Q psy2898          11 SNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEVTYHGP   90 (222)
Q Consensus        11 ~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~iTyHgP   90 (222)
                      +.+.+.++|+++|++||++|+++++++.+..+|+|||||||||||+||++++++++.+.   ++||++++|||++|||||
T Consensus         4 ~~~~~~~lg~~~Y~~a~~~Q~~l~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~ll~~~---~~~v~~~~RGG~iTyHGP   80 (213)
T PRK14342          4 NKLIVRQLGLQPYEPVWQAMQEFTDTRDEETPDEIWLVEHPPVFTQGQAGKPEHILNPG---DIPVVQSDRGGQVTYHGP   80 (213)
T ss_pred             CeEEEEeCCCcCHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCccCCCCCChhhccCCC---CCcEEEecCCCceEEECC
Confidence            45789999999999999999999988766678999999999999999999999998766   899999999999999999


Q ss_pred             CCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEeeCcEEE
Q psy2898          91 GQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVY  170 (222)
Q Consensus        91 GQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~~~vt~  170 (222)
                      ||||+|||+||+++     +.++++|++.||+++|++|++|||++.+.++.+|||+     +++||||||++++ +|||+
T Consensus        81 GQLV~YpIl~L~~~-----~~~~~~yv~~lE~~vi~~l~~~gi~~~~~~~~~GVWv-----~~~KIaaIGv~v~-r~vT~  149 (213)
T PRK14342         81 GQLVMYVLLDLKRL-----KLGVRQLVTAIEQTVINTLAEYGIEAHAKPDAPGVYV-----DGKKIASLGLRIR-RGCSF  149 (213)
T ss_pred             CeEEEEEEEEcccc-----CCCHHHHHHHHHHHHHHHHHHcCCceeecCCCCcCcc-----cCCEEEEEEEeEe-cceee
Confidence            99999999999988     8899999999999999999999999999999999999     8899999999999 99999


Q ss_pred             eceeeeecCCCCcCCcccCCCCCCCceeecccCCCCCCHHHHHHHHhcccc
Q psy2898         171 HGVSINVSMDLEPFNNINPCGYPGLVIVDMKKLGINTTISKVQHLFIKNFF  221 (222)
Q Consensus       171 HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~lg~~~~~~~v~~~l~~~f~  221 (222)
                      ||||||||+||++|+.|+|||++|++||||++++.++++++|++.++++|+
T Consensus       150 HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~~~~~~~~~~v~~~~~~~f~  200 (213)
T PRK14342        150 HGLALNVNMDLSPFLRINPCGYAGLEMTQLSDLGGPATVDEVAPRLLAELL  200 (213)
T ss_pred             cceeEecCCCchhhCcEecCCCCCCcEeeHHHhCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999885

>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]	Back alignment and domain information

>PRK14343 lipoate-protein ligase B; Provisional	Back alignment and domain information

>PRK14346 lipoate-protein ligase B; Provisional	Back alignment and domain information

>PRK14341 lipoate-protein ligase B; Provisional	Back alignment and domain information

>PRK14344 lipoate-protein ligase B; Provisional	Back alignment and domain information

>PRK14347 lipoate-protein ligase B; Provisional	Back alignment and domain information

>PRK14348 lipoate-protein ligase B; Provisional	Back alignment and domain information

>PRK14349 lipoate-protein ligase B; Provisional	Back alignment and domain information

>PRK14345 lipoate-protein ligase B; Provisional	Back alignment and domain information

>TIGR00214 lipB lipoate-protein ligase B	Back alignment and domain information

>KOG0325\|consensus	Back alignment and domain information

>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase	Back alignment and domain information

>PRK03822 lplA lipoate-protein ligase A; Provisional	Back alignment and domain information

>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional	Back alignment and domain information

>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]	Back alignment and domain information

>PRK08330 biotin--protein ligase; Provisional	Back alignment and domain information

>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B	Back alignment and domain information

>KOG3159\|consensus	Back alignment and domain information

>PRK05935 biotin--protein ligase; Provisional	Back alignment and domain information

>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	Back alignment and domain information

>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region	Back alignment and domain information

>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional	Back alignment and domain information

>PTZ00276 biotin/lipoate protein ligase; Provisional	Back alignment and domain information

>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional	Back alignment and domain information

>PRK08477 biotin--protein ligase; Provisional	Back alignment and domain information

>PRK06955 biotin--protein ligase; Provisional	Back alignment and domain information

>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed	Back alignment and domain information

>KOG0325\|consensus	Back alignment and domain information

>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function	Back alignment and domain information

>COG2029 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		222
1w66_A		232	Structure Of A Lipoate-protein Ligase B From Mycoba		8e-21
2qht_A		210	Structural Basis Of Octanoic Acid Recognition By Li		2e-16
2qhs_A		237	Structural Basis Of Octanoic Acid Recognition By Li		2e-16

>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium Tuberculosis Length = 232

Back alignment and structure

Iteration: 1

Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 14/208 (6%) Query: 5 SISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSH 64 SI S S + + Q G Y ++ R D L +EH VYT G ++ +H Sbjct: 6 SIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTE-TH 64 Query: 65 ILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAV 124 + ++ P++ TDRGG++T+HGPGQ + Y +I L ++ Y+++L EE++ Sbjct: 65 ---ERPIDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPL--DVVNYVRRL----EESL 115 Query: 125 ILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPF 184 I + ++ R GV++ P K+A+IG+++S + HG ++N DL F Sbjct: 116 IQVCADLGLHAGRVDGRSGVWLPGRPAR--KVAAIGVRVS-RATTLHGFALNCDCDLAAF 172 Query: 185 NNINPCGYPGLVIVDMK-KLGINTTISK 211 I PCG + + +LG T+ + Sbjct: 173 TAIVPCGISDAAVTSLSAELGRTVTVDE 200

PyMOL of 1w66

>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-Protein Ligase B Length = 210

Back alignment and structure

>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate-protein Ligase B Length = 237

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		222
1w66_A		232	Lipoyltransferase; lipoate-protein ligase B, lipoi	4e-81
2qhs_A		237	Lipoyltransferase; globular protein; HET: OCA; 1.5	3e-73

>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Length = 232	Back alignment and structure

 Score =  241 bits (616), Expect = 4e-81
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 14/217 (6%)

Query: 5   SISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSH 64
           SI S  S + + Q G   Y  ++         R     D L  +EH  VYT G ++    
Sbjct: 6   SIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHE 65

Query: 65  ILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAV 124
                 ++  P++ TDRGG++T+HGPGQ + Y +I L           +   V  +EE++
Sbjct: 66  RP----IDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLD------VVNYVRRLEESL 115

Query: 125 ILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPF 184
           I   +   ++  R     GV++   P    K+A+IG+++S +    HG ++N   DL  F
Sbjct: 116 IQVCADLGLHAGRVDGRSGVWLPGRP--ARKVAAIGVRVS-RATTLHGFALNCDCDLAAF 172

Query: 185 NNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220
             I PCG     +  +   LG   T+ +V+       
Sbjct: 173 TAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAV 209

PyMOL of 1w66

>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Length = 237	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		222
1w66_A		232	Lipoyltransferase; lipoate-protein ligase B, lipoi	100.0
2qhs_A		237	Lipoyltransferase; globular protein; HET: OCA; 1.5	100.0
2p5i_A		288	BH3822 protein; PFAM03099, structural genomics, PS	100.0
2c8m_A		262	Lipoate-protein ligase A; lipoylation; HET: LPA; 1	100.0
2p0l_A		288	Lipoate-protein ligase A; PFAM, lopoate-protein li	100.0
1vqz_A		341	Lipoate-protein ligase, putative; class II AARS an	100.0
3a7r_A		337	Lipoate-protein ligase A; adenylate-forming enzyme	100.0
2e5a_A		347	Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ;	100.0
2dxu_A		235	Biotin--[acetyl-COA-carboxylase] ligase; biotin bi	98.39
2eay_A		233	Biotin [acetyl-COA-carboxylase] ligase; biotin bio	98.33
3rkx_A		323	Biotin-[acetyl-COA-carboxylase] ligase; biotin pro	98.22
3rux_A		270	BIRA bifunctional protein; biotin-protein ligase,	98.22
2ej9_A		237	Putative biotin ligase; biotin biosynthesis, monom	98.2
1bia_A		321	BIRA bifunctional protein; transcription regulatio	98.14
3bfm_A		235	Biotin protein ligase-like protein of unknown FUN;	97.7
2ddz_A		190	190AA long hypothetical protein; hexamer, structur	92.34

>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3	Back alignment and structure

Probab=100.00  E-value=2.7e-64  Score=435.57  Aligned_cols=201  Identities=29%  Similarity=0.524  Sum_probs=188.0

Q ss_pred             eccCCCceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCC
Q psy2898           5 SISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGE   84 (222)
Q Consensus         5 ~~~~~~~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~   84 (222)
                      ++......+.++++|++||+++|++|+.+++.+....+|+|||+|||||||+|++++.++++..    +|||++++|||+
T Consensus         6 ~~~~~~~~~~~~~lg~~~Y~~a~~~q~~l~~~~~~~~~d~l~l~eh~pv~TiG~~q~~~~l~~~----gi~Vvr~~rGG~   81 (232)
T 1w66_A            6 SIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHERPID----GTPVVDTDRGGK   81 (232)
T ss_dssp             CCBSCCSCCEEEEEEECCHHHHHHHHHHHHHHHHTTCCCEEEEEECCSEEEECTTCCGGGSCTT----CCCCEECSSSSS
T ss_pred             cccccCceEEEEeCCCcCHHHHHHHHHHHHHHhhCCCCCEEEEEecCCEEEeCCCCChhhhccc----CCeEEEecCCCc
Confidence            4445567899999999999999999999999877668899999999999999999999886532    899999999999


Q ss_pred             ceeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCC---CCeEeecce
Q psy2898          85 VTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFS---GAKIASIGL  161 (222)
Q Consensus        85 iTyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~---~~KIasiGv  161 (222)
                      +|||||||+|+|||+||++      +.++++|++.||+++|++|++|||+|++.++++||||     +   ++||||+|+
T Consensus        82 ~tYHgPGQlv~Y~Il~l~~------~~~v~~~v~~le~~vI~~L~~~Gi~a~~~~g~~gV~v-----~~~~~rKIaaig~  150 (232)
T 1w66_A           82 ITWHGPGQLVGYPIIGLAE------PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWL-----PGRPARKVAAIGV  150 (232)
T ss_dssp             EEEECTTEEEEEEECBBCS------SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEE-----CSSSCEEEEEEEE
T ss_pred             eEEECCCCeEEEEEEECCC------CCCHHHHHHHHHHHHHHHHHHcCCCeEecCCCCeEEe-----cCCCCCEEEEeee
Confidence            9999999999999999975      5699999999999999999999999999899999999     6   899999999


Q ss_pred             eEeeCcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898         162 KISAKGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF  221 (222)
Q Consensus       162 ~i~~~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~  221 (222)
                      +++ +|+|+||+||||++||++|..|+|||+.+++||||++ ++.+++++++++.++++|+
T Consensus       151 r~~-~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f~  210 (232)
T 1w66_A          151 RVS-RATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVC  210 (232)
T ss_dssp             EEE-TTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             eee-CCEEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHHH
Confidence            999 9999999999999999999999999999999999995 8999999999999998875

PyMOL of 1w66

>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A	Back alignment and structure

>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3	Back alignment and structure

>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A	Back alignment and structure

>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3	Back alignment and structure

>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3	Back alignment and structure

>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*	Back alignment and structure

>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A	Back alignment and structure

>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...	Back alignment and structure

>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*	Back alignment and structure

>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*	Back alignment and structure

>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A	Back alignment and structure

>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}	Back alignment and structure

>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*	Back alignment and structure

>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}	Back alignment and structure

>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		222
d1w66a1		216	d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycoba	1e-32
d2c8ma1		256	d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther	4e-16
d1x2ga2		246	d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do	2e-15
d1vqza2		241	d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te	3e-15
d2p5ia1		265	d.104.1.3 (A:14-278) Hypothetical protein BH3822 {	7e-13
d2p0la1		269	d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre	6e-11

>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  115 bits (289), Expect = 1e-32
 Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 14/217 (6%)

Query: 5   SISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSH 64
           SI S  S + + Q G   Y  ++         R     D L  +EH  VYT G ++    
Sbjct: 4   SIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHE 63

Query: 65  ILISKKLNNIPIIRTDRGGEVTYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAV 124
             I    +  P++ TDRGG++T+HGPGQ + Y +I L           +   V  +EE++
Sbjct: 64  RPI----DGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPL------DVVNYVRRLEESL 113

Query: 125 ILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISAKGYVYHGVSINVSMDLEPF 184
           I   +   ++  R     GV++   P    K+A+IG+++S +    HG ++N   DL  F
Sbjct: 114 IQVCADLGLHAGRVDGRSGVWLPGRPAR--KVAAIGVRVS-RATTLHGFALNCDCDLAAF 170

Query: 185 NNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNF 220
             I PCG     +  +   LG   T+ +V+       
Sbjct: 171 TAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAV 207

PyMOL of d1w66a1

>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256	Back information, alignment and structure

>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246	Back information, alignment and structure

>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241	Back information, alignment and structure

>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265	Back information, alignment and structure

>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		222
d1w66a1		216	Lipoyltransferase LipB {Mycobacterium tuberculosis	100.0
d2p0la1		269	Lipoate-protein ligase A {Streptococcus agalactiae	99.96
d2c8ma1		256	Lipoate-protein ligase A {Thermoplasma acidophilum	99.95
d1vqza2		241	LplA-like protein SP1160, N-terminal domain {Strep	99.95
d2p5ia1		265	Hypothetical protein BH3822 {Bacillus halodurans [	99.94
d1x2ga2		246	Two-domain LplA, N-terminal domain {Escherichia co	99.94
d2zgwa2		188	Biotin--[acetyl-CoA-carboxylase] ligase catalytic	98.81
d1biaa3		207	Biotin repressor/biotin holoenzyme synthetase, cat	98.14
d2ddza1		188	Uncharacterized protein PH0223 {Pyrococcus horikos	92.32

>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoyltransferase LipB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.3e-70  Score=466.82  Aligned_cols=203  Identities=28%  Similarity=0.515  Sum_probs=188.6

Q ss_pred             ccCCCceeEEEECCccchHHHHHHHHHHHHhhcCCCCCeEEEEecCCeeeeccCCCcccccccccCCCcCEEEeCcCCCc
Q psy2898           6 ISSTYSNLQIIQRGLEPYIVSFNAMLLFNSNRTNYTIDQLWFVEHFPVYTLGLKSNFSHILISKKLNNIPIIRTDRGGEV   85 (222)
Q Consensus         6 ~~~~~~~~~~~~lG~~~Y~~a~~~q~~~~~~~~~~~~d~lll~EH~Pv~T~Gr~~~~~~ll~~~~~~gi~v~~~~RGG~i   85 (222)
                      +.+....+.+++||++||+++|++|+++++.+.+..+|++||||||||||+|++++.++++..    ++||++|+|||++
T Consensus         5 ~~~~~~~i~i~~LG~v~Y~~a~~~q~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~~~~~----~i~v~~tdRGG~v   80 (216)
T d1w66a1           5 IRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHERPID----GTPVVDTDRGGKI   80 (216)
T ss_dssp             CBSCCSCCEEEEEEECCHHHHHHHHHHHHHHHHTTCCCEEEEEECCSEEEECTTCCGGGSCTT----CCCCEECSSSSSE
T ss_pred             hhhcCCceEEEECCccCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCceeecccCcccccccc----ccceeecCCCceE
Confidence            445577899999999999999999999999887778999999999999999999998887654    7999999999999


Q ss_pred             eeeCCCCeEEEEeeecCcccccccCCcHHHHHHHHHHHHHHHHhhcCCcceecCCCCcEEEecCCCCCCeEeecceeEee
Q psy2898          86 TYHGPGQAIIYLLIDLRRRYSDNIKIYIKKLVENIEEAVILTMSQYNINCKRKKNAPGVYIANGPFSGAKIASIGLKISA  165 (222)
Q Consensus        86 TyHgPGQLv~YpIl~L~~~~~~~~~~~~~~~v~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~~~~~~KIasiGv~i~~  165 (222)
                      |||||||||+|||+||++      ..++++|++.||+++|++|++||+++.+.++.+|||+...  .++||||||++++ 
T Consensus        81 TyHGPGQlV~Ypil~l~~------~~~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~~--~~~KIasiGv~v~-  151 (216)
T d1w66a1          81 TWHGPGQLVGYPIIGLAE------PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGR--PARKVAAIGVRVS-  151 (216)
T ss_dssp             EEECTTEEEEEEECBBCS------SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSS--SCEEEEEEEEEEE-
T ss_pred             EEecCCceeeEEEecccc------ccchhhhHHHHHHHHHHHHHhccccccccccCCceeeecc--hhhHHHHHHHHhc-
Confidence            999999999999999985      5699999999999999999999999999999999999321  3469999999999 


Q ss_pred             CcEEEeceeeeecCCCCcCCcccCCCCCCCceeeccc-CCCCCCHHHHHHHHhcccc
Q psy2898         166 KGYVYHGVSINVSMDLEPFNNINPCGYPGLVIVDMKK-LGINTTISKVQHLFIKNFF  221 (222)
Q Consensus       166 ~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~  221 (222)
                      +|+|+||+||||++||++|+.|+|||+++..||||++ +|.++++++|++.++++|+
T Consensus       152 ~~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~  208 (216)
T d1w66a1         152 RATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVC  208 (216)
T ss_dssp             TTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             cceeecceEEeccCChhhcCeEEcCCCCCCceeeeHHHhCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999976 8999999999999999885

PyMOL of d1w66a1

>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]}	Back information, alignment and structure

>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure